BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038287
(91 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84J71|PP161_ARATH Pentatricopeptide repeat-containing protein At2g17670
OS=Arabidopsis thaliana GN=At2g17670 PE=2 SV=1
Length = 463
Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 61/91 (67%), Positives = 74/91 (81%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K PPD +TYNFL+K LCKC+ L VY FVD+MR +KP+LV++TILIDNVCN+K
Sbjct: 185 LTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNVCNSK 244
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
NLREAM LVS L ++GFKPDCF+YNTIMKG+
Sbjct: 245 NLREAMYLVSKLGNAGFKPDCFLYNTIMKGF 275
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD F YN ++K C + +M+ G++P+ +TY LI + + EA
Sbjct: 263 PDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEE-GVEPDQITYNTLIFGLSKAGRVEEARM 321
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + D+G++PD Y ++M G
Sbjct: 322 YLKTMVDAGYEPDTATYTSLMNG 344
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN L+ L K + ++ M G +P+ TYT L++ +C A+
Sbjct: 298 PDQITYNTLIFGLSKAGRVEEARMYLKTM-VDAGYEPDTATYTSLMNGMCRKGESLGALS 356
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + G P+ YNT++ G
Sbjct: 357 LLEEMEARGCAPNDCTYNTLLHG 379
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ +C+ + +++M A G PN TY L+ +C + + + M
Sbjct: 333 PDTATYTSLMNGMCRKGESLGALSLLEEMEAR-GCAPNDCTYNTLLHGLCKARLMDKGME 391
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
L + SG K + Y T+++
Sbjct: 392 LYEMMKSSGVKLESNGYATLVR 413
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2 IFKQLP---PDIFTYNFLVKCLCKC--RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
I K P P T+ L+ C+ S++ V+ ++ M + G++P+ VT I + ++
Sbjct: 111 ILKSQPNFRPGRSTFLILLSHACRAPDSSISNVHRVLNLM-VNNGLEPDQVTTDIAVRSL 169
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
C T + EA L+ L++ PD + YN ++K
Sbjct: 170 CETGRVDEAKDLMKELTEKHSPPDTYTYNFLLK 202
>sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420,
mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2
SV=1
Length = 535
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+IFT N LVK LCK + + Y +D++ S+G+ PNLVTYT ++ ++ A R
Sbjct: 189 PNIFTCNLLVKALCKKNDIESAYKVLDEI-PSMGLVPNLVTYTTILGGYVARGDMESAKR 247
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + D G+ PD Y +M GY
Sbjct: 248 VLEEMLDRGWYPDATTYTVLMDGY 271
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD + L+ LCK +T D+ G P+L+TY LI +C L EA R
Sbjct: 364 PDNALLSTLIHWLCKEGRVTEARKLFDEFEK--GSIPSLLTYNTLIAGMCEKGELTEAGR 421
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + KP+ F YN +++G
Sbjct: 422 LWDDMYERKCKPNAFTYNVLIEG 444
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN L+ +C+ LT D M KPN TY +LI+ + N++E +R
Sbjct: 398 PSLLTYNTLIAGMCEKGELTEAGRLWDDMYER-KCKPNAFTYNVLIEGLSKNGNVKEGVR 456
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
++ + + G P+ + + +G
Sbjct: 457 VLEEMLEIGCFPNKTTFLILFEG 479
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ CK + +D M + I+PN VTY ++I +C K EA
Sbjct: 259 PDATTYTVLMDGYCKLGRFSEAATVMDDMEKN-EIEPNEVTYGVMIRALCKEKKSGEARN 317
Query: 68 LVSALSDSGFKPD 80
+ + + F PD
Sbjct: 318 MFDEMLERSFMPD 330
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ + N L+ L + + V+ + S GI PN+ T +L+ +C ++ A +++
Sbjct: 155 VRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVL 214
Query: 70 SALSDSGFKPDCFVYNTIMKGY 91
+ G P+ Y TI+ GY
Sbjct: 215 DEIPSMGLVPNLVTYTTILGGY 236
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ FTYN L++ L K ++ +++M +G PN T+ IL + + +AM+
Sbjct: 433 PNAFTYNVLIEGLSKNGNVKEGVRVLEEM-LEIGCFPNKTTFLILFEGLQKLGKEEDAMK 491
Query: 68 LVS 70
+VS
Sbjct: 492 IVS 494
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P+ TY +++ LCK + N D+M P+ +ID +C + E
Sbjct: 291 EIEPNEVTYGVMIRALCKEKKSGEARNMFDEM-LERSFMPDSSLCCKVIDALCEDHKVDE 349
Query: 65 AMRLVSALSDSGFKPDCFVYNTIM 88
A L + + PD + +T++
Sbjct: 350 ACGLWRKMLKNNCMPDNALLSTLI 373
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCK-CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K + P++FTY+ L+ LCK RSL + F +M + G +PN+VTYT LI +C + +
Sbjct: 256 KGIEPNVFTYSSLMDGLCKDGRSLQAMELF--EMMMARGCRPNMVTYTTLITGLCKEQKI 313
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+EA+ L+ ++ G KPD +Y ++ G+
Sbjct: 314 QEAVELLDRMNLQGLKPDAGLYGKVISGF 342
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IF ++P PD +TY L+ LC+ + +M P +VTYT LI+ +
Sbjct: 179 IFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEM-VEKDCAPTVVTYTSLINGL 237
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C +KN+ EAMR + + G +P+ F Y+++M G
Sbjct: 238 CGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDG 271
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P + TY L+ LC +++ ++++M+ S GI+PN+ TY+ L+D +C
Sbjct: 218 MVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMK-SKGIEPNVFTYSSLMDGLCKDG 276
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+AM L + G +P+ Y T++ G
Sbjct: 277 RSLQAMELFEMMMARGCRPNMVTYTTLITG 306
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ LCK + + +D+M G+KP+ Y +I C REA
Sbjct: 295 PNMVTYTTLITGLCKEQKIQEAVELLDRMNLQ-GLKPDAGLYGKVISGFCAISKFREAAN 353
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
+ + G P+ +N +K
Sbjct: 354 FLDEMILGGITPNRLTWNIHVK 375
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + TY L+ +CK ++ F+DQMR G+ PN TYT L+D + EA
Sbjct: 341 LTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVR-GLCPNERTYTTLVDGFSQKGYMNEA 399
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
R++ ++D+GF P YN ++ G+
Sbjct: 400 YRVLREMNDNGFSPSVVTYNALINGH 425
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ Q+ P++FTYN L++ C ++ D+M G PN+VTY LID C +
Sbjct: 196 MLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETK-GCLPNVVTYNTLIDGYCKLR 254
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ + +L+ +++ G +P+ YN ++ G
Sbjct: 255 KIDDGFKLLRSMALKGLEPNLISYNVVING 284
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ CK R + + + M A G++PNL++Y ++I+ +C ++E
Sbjct: 238 PNVVTYNTLIDGYCKLRKIDDGFKLLRSM-ALKGLEPNLISYNVVINGLCREGRMKEVSF 296
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ ++ G+ D YNT++KGY
Sbjct: 297 VLTEMNRRGYSLDEVTYNTLIKGY 320
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN L+ C + ++ M+ G+ P++V+Y+ ++ C + ++ EA+R
Sbjct: 413 PSVVTYNALINGHCVTGKMEDAIAVLEDMKEK-GLSPDVVSYSTVLSGFCRSYDVDEALR 471
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + + G KPD Y+++++G+
Sbjct: 472 VKREMVEKGIKPDTITYSSLIQGF 495
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + PD TY+ L++ C+ R + ++M +G+ P+ TYT LI+ C
Sbjct: 476 MVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEM-LRVGLPPDEFTYTALINAYCMEG 534
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L +A++L + + + G PD Y+ ++ G
Sbjct: 535 DLEKALQLHNEMVEKGVLPDVVTYSVLING 564
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+ +Y+ ++ C+ + +M GIKP+ +TY+ LI C + +
Sbjct: 444 KGLSPDVVSYSTVLSGFCRSYDVDEALRVKREM-VEKGIKPDTITYSSLIQGFCEQRRTK 502
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L + G PD F Y ++ Y
Sbjct: 503 EACDLYEEMLRVGLPPDEFTYTALINAY 530
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
LPPD FTY L+ C L ++M G+ P++VTY++LI+ + REA
Sbjct: 516 LPPDEFTYTALINAYCMEGDLEKALQLHNEM-VEKGVLPDVVTYSVLINGLNKQSRTREA 574
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
RL+ L P Y+T+++
Sbjct: 575 KRLLLKLFYEESVPSDVTYHTLIE 598
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TYN L+K CK + +M G+ P+++TYT LI ++C N+ AM
Sbjct: 309 DEVTYNTLIKGYCKEGNFHQALVMHAEMLRH-GLTPSVITYTSLIHSMCKAGNMNRAMEF 367
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + G P+ Y T++ G+
Sbjct: 368 LDQMRVRGLCPNERTYTTLVDGF 390
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 8 PDIFTYNFLVKCLCKC-RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P + +YN ++ + R+++ N +M S + PN+ TY ILI C N+ A+
Sbjct: 167 PGVLSYNAVLDATIRSKRNISFAENVFKEMLES-QVSPNVFTYNILIRGFCFAGNIDVAL 225
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
L + G P+ YNT++ GY
Sbjct: 226 TLFDKMETKGCLPNVVTYNTLIDGY 250
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ K L P++ +YN ++ LC+ + V + +M G + VTY LI C
Sbjct: 266 MALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRR-GYSLDEVTYNTLIKGYCKEG 324
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
N +A+ + + + G P Y +++
Sbjct: 325 NFHQALVMHAEMLRHGLTPSVITYTSLI 352
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ D+++YN ++ CLC+C + V +M G +P++VT + LI+ C + +A
Sbjct: 100 IGHDLYSYNIVINCLCRCSRFVIALSVVGKM-MKFGYEPDVVTVSSLINGFCQGNRVFDA 158
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ LVS + + GF+PD +YNTI+ G
Sbjct: 159 IDLVSKMEEMGFRPDVVIYNTIIDG 183
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+FTYN L+ LC + +D M + G P++VTY LI+ C +K + E
Sbjct: 275 VDPDVFTYNSLINGLCMHGRVDEAKQMLDLM-VTKGCLPDVVTYNTLINGFCKSKRVDEG 333
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+L ++ G D YNTI++GY
Sbjct: 334 TKLFREMAQRGLVGDTITYNTIIQGY 359
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I TY+ L+ LC + + M+ S I+ ++ TY I+I +C N+ +A
Sbjct: 379 PNIRTYSILLYGLCMNWRVEKALVLFENMQKS-EIELDITTYNIVIHGMCKIGNVEDAWD 437
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L +LS G KPD Y T++ G+
Sbjct: 438 LFRSLSCKGLKPDVVSYTTMISGF 461
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD+ T + L+ C+ + + V +M +G +P++V Y +ID C + +A+
Sbjct: 136 EPDVVTVSSLINGFCQGNRVFDAIDLVSKME-EMGFRPDVVIYNTIIDGSCKIGLVNDAV 194
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L + G + D YN+++ G
Sbjct: 195 ELFDRMERDGVRADAVTYNSLVAG 218
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
D TYN LV LC + + M I PN++T+T +ID EAM+
Sbjct: 207 ADAVTYNSLVAGLCCSGRWSDAARLMRDM-VMRDIVPNVITFTAVIDVFVKEGKFSEAMK 265
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L ++ PD F YN+++ G
Sbjct: 266 LYEEMTRRCVDPDVFTYNSLING 288
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P++ T+ ++ K + ++M + P++ TY LI+ +C
Sbjct: 235 MVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRC-VDPDVFTYNSLINGLCMHG 293
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA +++ + G PD YNT++ G+
Sbjct: 294 RVDEAKQMLDLMVTKGCLPDVVTYNTLINGF 324
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ DI TYN ++ +CK ++ ++ + G+KP++V+YT +I C + +
Sbjct: 411 EIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCK-GLKPDVVSYTTMISGFCRKRQWDK 469
Query: 65 AMRLVSALSDSGFKP 79
+ L + + G P
Sbjct: 470 SDLLYRKMQEDGLLP 484
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ YN ++ CK + D+M G++ + VTY L+ +C + +A R
Sbjct: 172 PDVVIYNTIIDGSCKIGLVNDAVELFDRMERD-GVRADAVTYNSLVAGLCCSGRWSDAAR 230
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + P+ + ++
Sbjct: 231 LMRDMVMRDIVPNVITFTAVI 251
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 31/121 (25%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSL------------------TTVYNFV--------- 33
++ K PD+ TYN L+ CK + + T YN +
Sbjct: 305 MVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGR 364
Query: 34 ----DQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
++ + + +PN+ TY+IL+ +C + +A+ L + S + D YN ++
Sbjct: 365 PDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIH 424
Query: 90 G 90
G
Sbjct: 425 G 425
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I ++ ++ + K ++ V + M GI +L +Y I+I+ +C A+
Sbjct: 67 PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVC-GIGHDLYSYNIVINCLCRCSRFVIALS 125
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+V + G++PD ++++ G+
Sbjct: 126 VVGKMMKFGYEPDVVTVSSLINGF 149
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY L+K LC + N V +M + GIKPN+ TYT+LID++C+ +A
Sbjct: 321 PTVRTYTVLIKSLCGSERKSEALNLVKEMEET-GIKPNIHTYTVLIDSLCSQCKFEKARE 379
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + + G P+ YN ++ GY
Sbjct: 380 LLGQMLEKGLMPNVITYNALINGY 403
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +++ PD+ TYN L+ C+ + + Y + M G+ P+ TYT +ID++C +K
Sbjct: 453 MLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDR-GLVPDQWTYTSMIDSLCKSK 511
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA L +L G P+ +Y ++ GY
Sbjct: 512 RVEEACDLFDSLEQKGVNPNVVMYTALIDGY 542
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + T L+ L K Y+ QM +S G KP+ TYT I C L +A
Sbjct: 598 LQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSS-GTKPDAHTYTTFIQTYCREGRLLDA 656
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+++ + ++G PD F Y++++KGY
Sbjct: 657 EDMMAKMRENGVSPDLFTYSSLIKGY 682
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PD +TY ++ LCK + + + D + G+ PN+V YT LID C +
Sbjct: 491 RGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQK-GVNPNVVMYTALIDGYCKAGKVD 549
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA ++ + P+ +N ++ G
Sbjct: 550 EAHLMLEKMLSKNCLPNSLTFNALIHG 576
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P+I TY L+ LC + QM G+ PN++TY LI+ C + +A
Sbjct: 354 IKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEK-GLMPNVITYNALINGYCKRGMIEDA 412
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +V + P+ YN ++KGY
Sbjct: 413 VDVVELMESRKLSPNTRTYNELIKGY 438
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L P++ TYN L+ CK + + V+ M S + PN TY LI C +
Sbjct: 384 MLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELME-SRKLSPNTRTYNELIKGYCKS- 441
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ +AM +++ + + PD YN+++ G
Sbjct: 442 NVHKAMGVLNKMLERKVLPDVVTYNSLIDG 471
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ L PD FTY L+ C+ + L + + ++M G + N V YT LI +C +
Sbjct: 244 IVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLK-GCRRNEVAYTHLIHGLCVAR 302
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ EAM L + D P Y ++K
Sbjct: 303 RIDEAMDLFVKMKDDECFPTVRTYTVLIK 331
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRA------SLGIKPNLVTYTILIDNVCNTKNLRE 64
Y ++ C + + VD+M+ + PN+ TY +++ C N+ E
Sbjct: 177 LKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEE 236
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A + VS + ++G PD F Y +++ GY
Sbjct: 237 ANQYVSKIVEAGLDPDFFTYTSLIMGY 263
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+I+TYN +V CK ++ +V ++ G+ P+ TYT LI C K+L A +
Sbjct: 216 PNIYTYNKMVNGYCKLGNVEEANQYVSKI-VEAGLDPDFFTYTSLIMGYCQRKDLDSAFK 274
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + + G + + Y ++ G
Sbjct: 275 VFNEMPLKGCRRNEVAYTHLIHG 297
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P+ T+N L+ LC L +++ +G++P + T TILI +
Sbjct: 558 MLSKNCLPNSLTFNALIHGLCADGKLKEA-TLLEEKMVKIGLQPTVSTDTILIHRLLKDG 616
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ A + SG KPD Y T ++ Y
Sbjct: 617 DFDHAYSRFQQMLSSGTKPDAHTYTTFIQTY 647
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY ++ C+ L + + +MR + G+ P+L TY+ LI + A
Sbjct: 635 PDAHTYTTFIQTYCREGRLLDAEDMMAKMREN-GVSPDLFTYSSLIKGYGDLGQTNFAFD 693
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
++ + D+G +P + +++K
Sbjct: 694 VLKRMRDTGCEPSQHTFLSLIK 715
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 36/79 (45%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P+ +Y L+ +C+ +L D M+ + GI P+ + + L+ C K
Sbjct: 751 MVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLK 810
Query: 61 NLREAMRLVSALSDSGFKP 79
EA ++V + G P
Sbjct: 811 KHNEAAKVVDDMICVGHLP 829
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L P++ YN L+ C+ + +D+M G+ PN VTY +ID C +
Sbjct: 653 MVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVK-GLHPNAVTYCTIIDGYCKSG 711
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+L EA RL + G PD FVY T++ G
Sbjct: 712 DLAEAFRLFDEMKLKGLVPDSFVYTTLVDG 741
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+TY +VK +C L YN V +M AS G +PN+V YT LI +AMR++
Sbjct: 418 YTYGTVVKGMCSSGDLDGAYNIVKEMIAS-GCRPNVVIYTTLIKTFLQNSRFGDAMRVLK 476
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
+ + G PD F YN+++ G
Sbjct: 477 EMKEQGIAPDIFCYNSLIIG 496
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+F+Y L+ K ++ + D+M G+ PN++ Y +L+ C + +
Sbjct: 621 KGIAPDVFSYGVLINGFSKLGNMQKASSIFDEM-VEEGLTPNVIIYNMLLGGFCRSGEIE 679
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A L+ +S G P+ Y TI+ GY
Sbjct: 680 KAKELLDEMSVKGLHPNAVTYCTIIDGY 707
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + D TY L+ L K + +MR GI P++ +Y +LI+
Sbjct: 583 MVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK-GIAPDVFSYGVLINGFSKLG 641
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N+++A + + + G P+ +YN ++ G+
Sbjct: 642 NMQKASSIFDEMVEEGLTPNVIIYNMLLGGF 672
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K L P +TY+ L+ LCK + L + + +M SLG+ + TY++LID + +
Sbjct: 268 MICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMD-SLGVSLDNHTYSLLIDGLLKGR 326
Query: 61 NLREAMRLVSALSDSGFKPDCFVYN 85
N A LV + G ++Y+
Sbjct: 327 NADAAKGLVHEMVSHGINIKPYMYD 351
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 43 KPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
KPN VTY I+ID +C NL A L + ++ P Y +++ GY
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGY 850
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ L P+ FTY + + + +V +MR G+ PN V T LI+ C
Sbjct: 513 MVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMR-ECGVLPNKVLCTGLINEYCKKG 571
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA ++ D G D Y +M G
Sbjct: 572 KVIEACSAYRSMVDQGILGDAKTYTVLMNG 601
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PDIF YN L+ L K + + +F+ +M + G+KPN TY I
Sbjct: 481 QGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVEN-GLKPNAFTYGAFISGYIEASEFA 539
Query: 64 EAMRLVSALSDSGFKPD 80
A + V + + G P+
Sbjct: 540 SADKYVKEMRECGVLPN 556
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLV----TYTILIDNV 56
+I L P Y L++ C+ +++ Y + +M+ K N+V TY ++ +
Sbjct: 373 MIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMK-----KRNIVISPYTYGTVVKGM 427
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C++ +L A +V + SG +P+ +Y T++K +
Sbjct: 428 CSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTF 462
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN ++ LCK +L QM+ + + P ++TYT L++ E
Sbjct: 803 PNDVTYNIMIDYLCKEGNLEAAKELFHQMQNA-NLMPTVITYTSLLNGYDKMGRRAEMFP 861
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +G +PD +Y+ I+ +
Sbjct: 862 VFDEAIAAGIEPDHIMYSVIINAF 885
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+ TY ++ CK L + D+M+ G+ P+ YT L+D C ++
Sbjct: 691 KGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLK-GLVPDSFVYTTLVDGCCRLNDVE 749
Query: 64 EAM 66
A+
Sbjct: 750 RAI 752
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 34 DQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
D M AS G+ P Y LI+ C KN+R+ L+ + + Y T++KG
Sbjct: 371 DGMIAS-GLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKG 426
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 20/102 (19%)
Query: 9 DIFTYNFLVKCLCKC-----------------RSLTTVYNFVDQMRASL---GIKPNLVT 48
D+ TY+ L+ C+ R+ T + +++ S+ G+ P T
Sbjct: 220 DVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYT 279
Query: 49 YTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
Y +LID +C K L +A L+ + G D Y+ ++ G
Sbjct: 280 YDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDG 321
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD TYN L+ CK L D M S G +P++VTY+ILI++ C K
Sbjct: 341 MITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLM-VSKGCEPDIVTYSILINSYCKAK 399
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + MRL +S G P+ YNT++ G+
Sbjct: 400 RVDDGMRLFREISSKGLIPNTITYNTLVLGF 430
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM---RASLGIKPNLVTYTILIDNVC 57
++ + +PP + TY L+ LC L ++M R +LGI Y I+I +C
Sbjct: 446 MVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIG----IYNIIIHGMC 501
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N + +A L +LSD G KPD YN ++ G
Sbjct: 502 NASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGG 534
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+ TYN LV C+ L +M S G+ P++VTY IL+D +C+ L
Sbjct: 414 KGLIPNTITYNTLVLGFCQSGKLNAAKELFQEM-VSRGVPPSVVTYGILLDGLCDNGELN 472
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ + + S +YN I+ G
Sbjct: 473 KALEIFEKMQKSRMTLGIGIYNIIIHG 499
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD T++ LV C ++ VD+M + +P+LVT + LI+ +C + EA+
Sbjct: 137 EPDTITFSTLVNGFCLEGRVSEAVALVDRM-VEMKQRPDLVTVSTLINGLCLKGRVSEAL 195
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
L+ + + GF+PD Y ++
Sbjct: 196 VLIDRMVEYGFQPDEVTYGPVL 217
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PDI TY+ L+ CK + + ++ +S G+ PN +TY L+ C +
Sbjct: 376 MVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREI-SSKGLIPNTITYNTLVLGFCQSG 434
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L A L + G P Y ++ G
Sbjct: 435 KLNAAKELFQEMVSRGVPPSVVTYGILLDG 464
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY ++ LCK + + +M IK ++V Y+I+ID++C + +A+
Sbjct: 208 PDEVTYGPVLNRLCKSGNSALALDLFRKMEER-NIKASVVQYSIVIDSLCKDGSFDDALS 266
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + + G K D Y++++ G
Sbjct: 267 LFNEMEMKGIKADVVTYSSLIGG 289
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K + D+ TY+ L+ LC + +M I P++VT++ LID L
Sbjct: 273 MKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGR-NIIPDVVTFSALIDVFVKEGKL 331
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L + + G PD YN+++ G+
Sbjct: 332 LEAKELYNEMITRGIAPDTITYNSLIDGF 360
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ D++T ++ C C+ + L ++ + + LG +P+ +T++ L++ C + EA
Sbjct: 101 IEHDMYTMTIMINCYCRKKKLLFAFSVLGRA-WKLGYEPDTITFSTLVNGFCLEGRVSEA 159
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ LV + + +PD +T++ G
Sbjct: 160 VALVDRMVEMKQRPDLVTVSTLING 184
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+ TYN ++ LCK SL+ +M+ G P+ TY ILI L
Sbjct: 519 KGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKED-GCTPDDFTYNILIRAHLGGSGLI 577
Query: 64 EAMRLVSALSDSGFKPD 80
++ L+ + GF D
Sbjct: 578 SSVELIEEMKVCGFSAD 594
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P +N L + + + V F M + GI+ ++ T TI+I+ C K L A
Sbjct: 68 PTPIDFNRLCSAVARTKQYDLVLGFCKGMELN-GIEHDMYTMTIMINCYCRKKKLLFAFS 126
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ G++PD ++T++ G+
Sbjct: 127 VLGRAWKLGYEPDTITFSTLVNGF 150
>sp|Q9LSQ2|PP239_ARATH Putative pentatricopeptide repeat-containing protein At3g16890,
mitochondrial OS=Arabidopsis thaliana GN=PPR40 PE=3 SV=1
Length = 659
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ PD+ T++ ++ CLC+ + + ++ +M GI+PN +TY ILI + C+T
Sbjct: 486 LLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEM-LEWGIEPNEITYNILIRSCCSTG 544
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +++L + + ++G PD + YN ++ +
Sbjct: 545 DTDRSVKLFAKMKENGLSPDLYAYNATIQSF 575
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F + P YN ++ L K SL Y QMR+ G KP+ TY ILI VC +
Sbjct: 173 FLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSD-GCKPDRFTYNILIHGVCKKGVV 231
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA+RLV + G +P+ F Y ++ G+
Sbjct: 232 DEAIRLVKQMEQEGNRPNVFTYTILIDGF 260
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L +++YN ++ CLCK R + F+ +M+ GI PNLVT+ + ++++
Sbjct: 421 LLSSVYSYNAVIDCLCKARRIENAAMFLTEMQ-DRGISPNLVTFNTFLSGYSVRGDVKKV 479
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
++ L GFKPD ++ I+
Sbjct: 480 HGVLEKLLVHGFKPDVITFSLII 502
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 1 LIFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
L F+Q+ PD FTYN L+ +CK + V QM G +PN+ TYTILID
Sbjct: 201 LKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQE-GNRPNVFTYTILIDG 259
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA++ + + P+ T + G
Sbjct: 260 FLIAGRVDEALKQLEMMRVRKLNPNEATIRTFVHG 294
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD++ YN ++ CK R + + M +G+KP+ TY+ LI + + EA
Sbjct: 561 LSPDLYAYNATIQSFCKMRKVKKAEELLKTM-LRIGLKPDNFTYSTLIKALSESGRESEA 619
Query: 66 MRLVSALSDSGFKPDCF 82
+ S++ G PD +
Sbjct: 620 REMFSSIERHGCVPDSY 636
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
+ + + P Y LV+ L + + ++ QM G+ ++ +Y +ID +C +
Sbjct: 382 VSRGVKPGFNGYLVLVQALLNAQRFSEGDRYLKQMGVD-GLLSSVYSYNAVIDCLCKARR 440
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ A ++ + D G P+ +NT + GY
Sbjct: 441 IENAAMFLTEMQDRGISPNLVTFNTFLSGY 470
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+N + CL K L D S G+KP Y +L+ + N + E R
Sbjct: 353 PDSSTFNAAMSCLLKGHDLVETCRIFDGF-VSRGVKPGFNGYLVLVQALLNAQRFSEGDR 411
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + G + YN ++
Sbjct: 412 YLKQMGVDGLLSSVYSYNAVI 432
>sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880
OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
Length = 743
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TYN LV CK SL + V+ M+ + + P+L TY ILI+ +CN ++RE
Sbjct: 271 LVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQT-NVLPDLCTYNILINGLCNAGSMREG 329
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L+ A+ +PD YNT++ G
Sbjct: 330 LELMDAMKSLKLQPDVVTYNTLIDG 354
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +T N L+ LCK NF + + + + VTY +I C K L+EA
Sbjct: 589 PDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREV--DTVTYNTMISAFCKDKKLKEAYD 646
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+S + + G +PD F YN+ +
Sbjct: 647 LLSEMEEKGLEPDRFTYNSFI 667
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ PD TYN ++K + K L+ + + M+ + G+ PN VTY L+ C +L+E
Sbjct: 235 KVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKN-GLVPNRVTYNNLVYGYCKLGSLKE 293
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A ++V + + PD YN ++ G
Sbjct: 294 AFQIVELMKQTNVLPDLCTYNILING 319
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TY+ L+K K L+ + +M GIK N +T ++D +C + L EA
Sbjct: 414 PDIVTYHTLIKAYLKVGDLSGALEMMREM-GQKGIKMNTITLNTILDALCKERKLDEAHN 472
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+++ GF D Y T++ G+
Sbjct: 473 LLNSAHKRGFIVDEVTYGTLIMGF 496
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ LC S+ +D M+ SL ++P++VTY LID EA +
Sbjct: 308 PDLCTYNILINGLCNAGSMREGLELMDAMK-SLKLQPDVVTYNTLIDGCFELGLSLEARK 366
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
L+ + + G K + +N +K
Sbjct: 367 LMEQMENDGVKANQVTHNISLK 388
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 35/77 (45%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+N +K LCK V V ++ G P++VTY LI +L A+ ++
Sbjct: 382 THNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMRE 441
Query: 72 LSDSGFKPDCFVYNTIM 88
+ G K + NTI+
Sbjct: 442 MGQKGIKMNTITLNTIL 458
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY L+ + + D+M+ + I P + T+ LI +C+ AM
Sbjct: 485 DEVTYGTLIMGFFREEKVEKALEMWDEMK-KVKITPTVSTFNSLIGGLCHHGKTELAMEK 543
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
L++SG PD +N+I+ GY
Sbjct: 544 FDELAESGLLPDDSTFNSIILGY 566
Score = 37.0 bits (84), Expect = 0.035, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 38/83 (45%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ T+N LV C L +++M + + P+ VTY ++ + L + L
Sbjct: 203 NVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKEL 262
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + +G P+ YN ++ GY
Sbjct: 263 LLDMKKNGLVPNRVTYNNLVYGY 285
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++F YN L+ LCK R D+M +G++PN VTY+ILID C L A+
Sbjct: 365 PNLFVYNALIDSLCKGRKFHEAELLFDRM-GKIGLRPNDVTYSILIDMFCRRGKLDTALS 423
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + D+G K + YN+++ G+
Sbjct: 424 FLGEMVDTGLKLSVYPYNSLINGH 447
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
I K L + TYN L++ C+ + + +M G+ P+ +TYT +I+ +C +
Sbjct: 779 ILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGD-GVSPDCITYTTMINELCRRND 837
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+++A+ L +++++ G +PD YNT++ G
Sbjct: 838 VKKAIELWNSMTEKGIRPDRVAYNTLIHG 866
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++ Y +++ LC+ + L+ + M A+ G N+V Y +LID +C + + EA+
Sbjct: 225 PDVYIYTGVIRSLCELKDLSRAKEMIAHMEAT-GCDVNIVPYNVLIDGLCKKQKVWEAVG 283
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ L+ KPD Y T++ G
Sbjct: 284 IKKDLAGKDLKPDVVTYCTLVYG 306
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P I+T+ L+ L + + ++M A +KPN VTY ++I+ C ++
Sbjct: 501 KGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEM-AEWNVKPNRVTYNVMIEGYCEEGDMS 559
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A + +++ G PD + Y ++ G
Sbjct: 560 KAFEFLKEMTEKGIVPDTYSYRPLIHG 586
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+ TY LV LCK + +D+M L P+ + L++ + +
Sbjct: 291 KDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEM-LCLRFSPSEAAVSSLVEGLRKRGKIE 349
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA+ LV + D G P+ FVYN ++
Sbjct: 350 EALNLVKRVVDFGVSPNLFVYNALI 374
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K+L P + TY L+ C + +M GI P++ T+T L+ +
Sbjct: 463 MINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGK-GIAPSIYTFTTLLSGLFRAG 521
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+R+A++L + +++ KP+ YN +++GY
Sbjct: 522 LIRDAVKLFNEMAEWNVKPNRVTYNVMIEGY 552
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
++ YN L+ CK ++ F+ +M + ++P +VTYT L+ C+ + +A+RL
Sbjct: 437 VYPYNSLINGHCKFGDISAAEGFMAEM-INKKLEPTVVTYTSLMGGYCSKGKINKALRLY 495
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
++ G P + + T++ G
Sbjct: 496 HEMTGKGIAPSIYTFTTLLSG 516
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 1 LIFK------QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILID 54
L+FK L P++ T + L+ L K R + M S+GI+P++ YT +I
Sbjct: 177 LVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDM-VSVGIRPDVYIYTGVIR 235
Query: 55 NVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++C K+L A +++ + +G + YN ++ G
Sbjct: 236 SLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDG 271
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TY+ L+ C+ L T +F+ +M G+K ++ Y LI+ C ++ A
Sbjct: 398 LRPNDVTYSILIDMFCRRGKLDTALSFLGEM-VDTGLKLSVYPYNSLINGHCKFGDISAA 456
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ + + +P Y ++M GY
Sbjct: 457 EGFMAEMINKKLEPTVVTYTSLMGGY 482
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD ++Y L+ LC + FVD + + N + YT L+ C L
Sbjct: 571 KGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKG-NCELNEICYTGLLHGFCREGKLE 629
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ + + G D Y ++ G
Sbjct: 630 EALSVCQEMVQRGVDLDLVCYGVLIDG 656
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ Y L+ K + + + +M G+KP+ V YT +ID T + +EA +
Sbjct: 646 DLVCYGVLIDGSLKHKDRKLFFGLLKEMH-DRGLKPDDVIYTSMIDAKSKTGDFKEAFGI 704
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ + G P+ Y ++ G
Sbjct: 705 WDLMINEGCVPNEVTYTAVING 726
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD TY ++ LC+ + + M GI+P+ V Y LI C
Sbjct: 813 MIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEK-GIRPDRVAYNTLIHGCCVAG 871
Query: 61 NLREAMRLVSALSDSGFKPD 80
+ +A L + + G P+
Sbjct: 872 EMGKATELRNEMLRQGLIPN 891
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
Y L+ C+ L + +M G+ +LV Y +LID K+ + L+ +
Sbjct: 615 YTGLLHGFCREGKLEEALSVCQEM-VQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEM 673
Query: 73 SDSGFKPDCFVYNTIM 88
D G KPD +Y +++
Sbjct: 674 HDRGLKPDDVIYTSMI 689
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L PD Y ++ K + D M + G PN VTYT +I+ +C +
Sbjct: 676 RGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLM-INEGCVPNEVTYTAVINGLCKAGFVN 734
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
EA L S + P+ Y +
Sbjct: 735 EAEVLCSKMQPVSSVPNQVTYGCFL 759
Score = 28.9 bits (63), Expect = 9.5, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 22/102 (21%)
Query: 7 PPDIFTYNFLVKCLCKC-------------------RSLTTVYNFVDQMRASLGIKPNLV 47
P D+F N L C KC R L V F M + + P +
Sbjct: 137 PSDVF--NVLFSCYEKCKLSSSSSFDLLIQHYVRSRRVLDGVLVF-KMMITKVSLLPEVR 193
Query: 48 TYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
T + L+ + ++ AM L + + G +PD ++Y +++
Sbjct: 194 TLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIR 235
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY+ ++ CL K L + +M G PNLVTY I++D +N + A
Sbjct: 465 LSPDTFTYSVIINCLGKAGHLPAAHKLFCEM-VDQGCTPNLVTYNIMMDLHAKARNYQNA 523
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
++L + ++GF+PD Y+ +M+
Sbjct: 524 LKLYRDMQNAGFEPDKVTYSIVME 547
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ + L N +QM+ + G KP+ VTY LID L AM
Sbjct: 397 PNTVTYNRLIHSYGRANYLNEAMNVFNQMQEA-GCKPDRVTYCTLIDIHAKAGFLDIAMD 455
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + G PD F Y+ I+
Sbjct: 456 MYQRMQAGGLSPDTFTYSVII 476
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY +V L + + + +D+M G +PN VTY LI + L EAM +
Sbjct: 363 DGHTYTTMVGNLGRAKQFGAINKLLDEMVRD-GCQPNTVTYNRLIHSYGRANYLNEAMNV 421
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ + ++G KPD Y T++
Sbjct: 422 FNQMQEAGCKPDRVTYCTLI 441
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
+F Q+ PD TY L+ K L + +M+A G+ P+ TY+++I+ +
Sbjct: 421 VFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAG-GLSPDTFTYSVIINCL 479
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
+L A +L + D G P+ YN +M
Sbjct: 480 GKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMM 511
Score = 36.6 bits (83), Expect = 0.049, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN ++ K R+ M+ + G +P+ VTY+I+++ + + L EA
Sbjct: 502 PNLVTYNIMMDLHAKARNYQNALKLYRDMQNA-GFEPDKVTYSIVMEVLGHCGYLEEAEA 560
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + + + PD VY ++
Sbjct: 561 VFTEMQQKNWIPDEPVYGLLV 581
Score = 32.7 bits (73), Expect = 0.64, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILI 53
L P++ T N L+ + + Y + M A LG++P+L TYT+L+
Sbjct: 605 LRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLA-LGLRPSLQTYTLLL 651
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+I TYN L+ LC+ L VDQM++ GI PNL+TY LID C L +A+ L
Sbjct: 302 NIVTYNTLIGGLCREMKLNEANKVVDQMKSD-GINPNLITYNTLIDGFCGVGKLGKALSL 360
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
L G P YN ++ G+
Sbjct: 361 CRDLKSRGLSPSLVTYNILVSGF 383
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P + TYN LV C+ + V +M GIKP+ VTYTILID + N+
Sbjct: 367 RGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEER-GIKPSKVTYTILIDTFARSDNME 425
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A++L ++ + G PD Y+ ++ G+
Sbjct: 426 KAIQLRLSMEELGLVPDVHTYSVLIHGF 453
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++TYN ++ LCK + D+MR G+ N+VTY LI +C L EA +
Sbjct: 266 PNLYTYNCVMNQLCKDGRTKDAFQVFDEMRER-GVSCNIVTYNTLIGGLCREMKLNEANK 324
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+V + G P+ YNT++ G+
Sbjct: 325 VVDQMKSDGINPNLITYNTLIDGF 348
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ C L + ++ S G+ P+LVTY IL+ C + A +
Sbjct: 336 PNLITYNTLIDGFCGVGKLGKALSLCRDLK-SRGLSPSLVTYNILVSGFCRKGDTSGAAK 394
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+V + + G KP Y ++
Sbjct: 395 MVKEMEERGIKPSKVTYTILI 415
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P TY L+ + ++ M LG+ P++ TY++LI C +
Sbjct: 402 RGIKPSKVTYTILIDTFARSDNMEKAIQLRLSME-ELGLVPDVHTYSVLIHGFCIKGQMN 460
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA RL ++ + +P+ +YNT++ GY
Sbjct: 461 EASRLFKSMVEKNCEPNEVIYNTMILGY 488
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P+ YN ++ CK S + +M + PN+ +Y +I+ +C +
Sbjct: 469 MVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEK-ELAPNVASYRYMIEVLCKER 527
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+EA RLV + DSG P + + I +
Sbjct: 528 KSKEAERLVEKMIDSGIDPSTSILSLISRA 557
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D++++ L+K C+ + ++ + ++ G PN+V YT LID C + +A L
Sbjct: 162 DVYSFGILIKGCCEAGEIEKSFDLLIEL-TEFGFSPNVVIYTTLIDGCCKKGEIEKAKDL 220
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ G + Y ++ G
Sbjct: 221 FFEMGKLGLVANERTYTVLING 242
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ Y L+ CK + + +M LG+ N TYT+LI+ + ++
Sbjct: 196 PNVVIYTTLIDGCCKKGEIEKAKDLFFEM-GKLGLVANERTYTVLINGLFKNGVKKQGFE 254
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + + G P+ + YN +M
Sbjct: 255 MYEKMQEDGVFPNLYTYNCVM 275
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TY L+ L K + ++M+ G+ PNL TY +++ +C ++A ++
Sbjct: 235 TYTVLINGLFKNGVKKQGFEMYEKMQED-GVFPNLYTYNCVMNQLCKDGRTKDAFQVFDE 293
Query: 72 LSDSGFKPDCFVYNTIMKG 90
+ + G + YNT++ G
Sbjct: 294 MRERGVSCNIVTYNTLIGG 312
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
+N+L+ + S ++F ++ ++ + + ++ ++ ILI C + ++ L+ L
Sbjct: 132 FNYLLTFVVGSSSFNQWWSFFNENKSKVVL--DVYSFGILIKGCCEAGEIEKSFDLLIEL 189
Query: 73 SDSGFKPDCFVYNTIMKG 90
++ GF P+ +Y T++ G
Sbjct: 190 TEFGFSPNVVIYTTLIDG 207
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ LC+ ++ DQ+ S G+ P+LVT+ IL++ C R+A
Sbjct: 434 PDVGTYNCLIAGLCRNGNIEAAKKLFDQL-TSKGL-PDLVTFHILMEGYCRKGESRKAAM 491
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ +S G KP YN +MKGY
Sbjct: 492 LLKEMSKMGLKPRHLTYNIVMKGY 515
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + + P++ +YN L+ LC ++ + D+M S G++PNL+TY LI+ C
Sbjct: 322 MLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKM-VSAGVQPNLITYNALINGFCKND 380
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L+EA+ + ++ G P +YN ++ Y
Sbjct: 381 MLKEALDMFGSVKGQGAVPTTRMYNMLIDAY 411
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC--- 57
+I +++ P++FT+N ++ LCK + + ++ M+ G PN+V+Y LID C
Sbjct: 214 MIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKV-YGCSPNVVSYNTLIDGYCKLG 272
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A ++ + ++ P+ +N ++ G+
Sbjct: 273 GNGKMYKADAVLKEMVENDVSPNLTTFNILIDGF 306
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P TYN ++K CK +L N QM ++ N+ +Y +L+ L +A
Sbjct: 501 LKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDA 560
Query: 66 MRLVSALSDSGFKPDCFVYNTI 87
L++ + + G P+ Y +
Sbjct: 561 NMLLNEMLEKGLVPNRITYEIV 582
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + P++ TYN L+ CK L + ++ G P Y +LID C
Sbjct: 357 MVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQ-GAVPTTRMYNMLIDAYCKLG 415
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ + L + G PD YN ++ G
Sbjct: 416 KIDDGFALKEEMEREGIVPDVGTYNCLIAG 445
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 2 IFKQLP----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
+F QL PD+ T++ L++ C+ + +M + +G+KP +TY I++ C
Sbjct: 458 LFDQLTSKGLPDLVTFHILMEGYCRKGESRKAAMLLKEM-SKMGLKPRHLTYNIVMKGYC 516
Query: 58 NTKNLREAMRLVSALS-DSGFKPDCFVYNTIMKGY 91
NL+ A + + + + + + YN +++GY
Sbjct: 517 KEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGY 551
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 15 FLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSD 74
++ L + RS Y + + +R I+PN+ T+ ++I+ +C T + +A ++ +
Sbjct: 194 LMIALLKENRSADVEYVYKEMIRRK--IQPNVFTFNVVINALCKTGKMNKARDVMEDMKV 251
Query: 75 SGFKPDCFVYNTIMKGY 91
G P+ YNT++ GY
Sbjct: 252 YGCSPNVVSYNTLIDGY 268
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI YN ++ LCK + + ++F ++ GI+PN+VTYT L++ +CN+ +A R
Sbjct: 188 PDIVAYNAIIDSLCKTKRVNDAFDFFKEIERK-GIRPNVVTYTALVNGLCNSSRWSDAAR 246
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+S + P+ Y+ ++ +
Sbjct: 247 LLSDMIKKKITPNVITYSALLDAF 270
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F + PDI+TYN L+ LC L + M+ + ++VTYT +I +C T +
Sbjct: 393 FFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKR-EMDLDIVTYTTVIRGMCKTGKV 451
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA L +LS G KPD Y T+M G
Sbjct: 452 EEAWSLFCSLSLKGLKPDIVTYTTMMSG 479
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D++T+N ++ C C C ++ + + +M LG +P+ VT L++ C + +A+ L
Sbjct: 119 DLYTFNIVINCFCCCFQVSLALSILGKM-LKLGYEPDRVTIGSLVNGFCRRNRVSDAVSL 177
Query: 69 VSALSDSGFKPDCFVYNTIM 88
V + + G+KPD YN I+
Sbjct: 178 VDKMVEIGYKPDIVAYNAII 197
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD T LV C+ ++ + VD+M +G KP++V Y +ID++C TK + +A
Sbjct: 152 EPDRVTIGSLVNGFCRRNRVSDAVSLVDKM-VEIGYKPDIVAYNAIIDSLCKTKRVNDAF 210
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+ G +P+ Y ++ G
Sbjct: 211 DFFKEIERKGIRPNVVTYTALVNG 234
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PDI TY+ L+ LC + D M S G ++V+Y LI+ C K
Sbjct: 286 MVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLM-VSKGCLADVVSYNTLINGFCKAK 344
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + M+L +S G + YNT+++G+
Sbjct: 345 RVEDGMKLFREMSQRGLVSNTVTYNTLIQGF 375
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K++ P++ TY+ L+ K + ++M + I P++VTY+ LI+ +C
Sbjct: 251 MIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEM-VRMSIDPDIVTYSSLINGLCLHD 309
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA ++ + G D YNT++ G+
Sbjct: 310 RIDEANQMFDLMVSKGCLADVVSYNTLINGF 340
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K D+ +YN L+ CK + + +M + G+ N VTY LI
Sbjct: 321 MVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREM-SQRGLVSNTVTYNTLIQGFFQAG 379
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++ +A S + G PD + YN ++ G
Sbjct: 380 DVDKAQEFFSQMDFFGISPDIWTYNILLGG 409
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TY LV LC + + M I PN++TY+ L+D +
Sbjct: 219 KGIRPNVVTYTALVNGLCNSSRWSDAARLLSDM-IKKKITPNVITYSALLDAFVKNGKVL 277
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA L + PD Y++++ G
Sbjct: 278 EAKELFEEMVRMSIDPDIVTYSSLING 304
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ DI TY +++ +CK + ++ + G+KP++VTYT ++ +C L
Sbjct: 429 REMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLK-GLKPDIVTYTTMMSGLCTKGLLH 487
Query: 64 EAMRLVSALSDSGF-KPDC 81
E L + + G K DC
Sbjct: 488 EVEALYTKMKQEGLMKNDC 506
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I +N L+ + K + V + +M LGI+ +L T+ I+I+ C + A+
Sbjct: 83 PSIVDFNRLLSAIVKLKKYDVVISLGKKMEV-LGIRNDLYTFNIVINCFCCCFQVSLALS 141
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + G++PD +++ G+
Sbjct: 142 ILGKMLKLGYEPDRVTIGSLVNGF 165
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+F+YN +++ C+ + L ++M+ S G +LVT+ ILID C + EA
Sbjct: 173 LMPDVFSYNTVIRGFCEGKELEKALELANEMKGS-GCSWSLVTWGILIDAFCKAGKMDEA 231
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
M + + G + D VY ++++G+
Sbjct: 232 MGFLKEMKFMGLEADLVVYTSLIRGF 257
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+L P +F YN L+ LCK SL + ++M+ P++V++ I+ID +++
Sbjct: 524 ELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNF-PDVVSFNIMIDGSLKAGDIKS 582
Query: 65 AMRLVSALSDSGFKPDCFVYNTIM 88
A L+ +S +G PD F Y+ ++
Sbjct: 583 AESLLVGMSRAGLSPDLFTYSKLI 606
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P TYN L++ CK L + M G++PN+ TYT LID +C +EA+
Sbjct: 279 SPCAITYNTLIRGFCKLGQLKEASEIFEFM-IERGVRPNVYTYTGLIDGLCGVGKTKEAL 337
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
+L++ + + +P+ YN I+
Sbjct: 338 QLLNLMIEKDEEPNAVTYNIII 359
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F L D+ Y L++ C C L D++ G P +TY LI C L
Sbjct: 240 FMGLEADLVVYTSLIRGFCDCGELDRGKALFDEV-LERGDSPCAITYNTLIRGFCKLGQL 298
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
+EA + + + G +P+ + Y ++ G
Sbjct: 299 KEASEIFEFMIERGVRPNVYTYTGLIDG 326
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P+++TY L+ LC ++ M +PN VTY I+I+ +C
Sbjct: 308 MIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLM-IEKDEEPNAVTYNIIINKLCKDG 366
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ +V + +PD YN ++ G
Sbjct: 367 LVADAVEIVELMKKRRTRPDNITYNILLGG 396
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ +YN L+ LCK L + D + LG + VT IL+++ ++ +AM
Sbjct: 422 PDVISYNALIHGLCKENRLHQALDIYDLLVEKLG-AGDRVTTNILLNSTLKAGDVNKAME 480
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L +SDS + Y ++ G+
Sbjct: 481 LWKQISDSKIVRNSDTYTAMIDGF 504
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 4 KQLPPDIF----TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59
K L D F + + L++C + R + + M G N+ + IL+ +C
Sbjct: 97 KMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKR-GFAFNVYNHNILLKGLCRN 155
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A+ L+ + + PD F YNT+++G+
Sbjct: 156 LECGKAVSLLREMRRNSLMPDVFSYNTVIRGF 187
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNL 62
++ PD TYN L+ LC L + M + S P++++Y LI +C L
Sbjct: 381 RRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRL 440
Query: 63 REAM 66
+A+
Sbjct: 441 HQAL 444
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD TYN ++ LC L ++Q+ S +P ++TYTILI+ +
Sbjct: 187 KDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL-LSDNCQPTVITYTILIEATMLEGGVD 245
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA++L+ + G KPD F YNTI++G
Sbjct: 246 EALKLMDEMLSRGLKPDMFTYNTIIRG 272
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 34/125 (27%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCK------------------CRSLTTVYN-----FVDQMR 37
++ + L PD+FTYN +++ +CK C YN ++Q +
Sbjct: 254 MLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGK 313
Query: 38 ASLGIK-----------PNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNT 86
G K PN+VTY+ILI +C + EAM L+ + + G PD + Y+
Sbjct: 314 WEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDP 373
Query: 87 IMKGY 91
++ +
Sbjct: 374 LIAAF 378
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD TYN ++ CLC+ + + + MR S P++VTY I++ C + +A
Sbjct: 469 IDPDEITYNSMISCLCREGMVDEAFELLVDMR-SCEFHPSVVTYNIVLLGFCKAHRIEDA 527
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ ++ ++ +G +P+ Y +++G
Sbjct: 528 INVLESMVGNGCRPNETTYTVLIEG 552
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD ++Y+ L+ C+ L F++ M S G P++V Y ++ +C
Sbjct: 362 KGLTPDAYSYDPLIAAFCREGRLDVAIEFLETM-ISDGCLPDIVNYNTVLATLCKNGKAD 420
Query: 64 EAMRLVSALSDSGFKPDCFVYNTI 87
+A+ + L + G P+ YNT+
Sbjct: 421 QALEIFGKLGEVGCSPNSSSYNTM 444
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TY L++ + +D+M S G+KP++ TY +I +C + A
Sbjct: 226 PTVITYTILIEATMLEGGVDEALKLMDEM-LSRGLKPDMFTYNTIIRGMCKEGMVDRAFE 284
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+V L G +PD YN +++
Sbjct: 285 MVRNLELKGCEPDVISYNILLRA 307
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ P + TYN ++ CK + N ++ M + G +PN TYT+LI+ + E
Sbjct: 503 EFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGN-GCRPNETTYTVLIEGIGFAGYRAE 561
Query: 65 AMRL------VSALSDSGFK 78
AM L + A+S+ FK
Sbjct: 562 AMELANDLVRIDAISEYSFK 581
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY+ L+ LC+ + N + M+ G+ P+ +Y LI C L A+
Sbjct: 331 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEK-GLTPDAYSYDPLIAAFCREGRLDVAIE 389
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + G PD YNT++
Sbjct: 390 FLETMISDGCLPDIVNYNTVL 410
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 34/118 (28%)
Query: 8 PDIFTYNFLVKCLCK------------------CRSLTTVYNFV--------DQMRA--- 38
PDI YN ++ LCK C ++ YN + D++RA
Sbjct: 401 PDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHM 460
Query: 39 -----SLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
S GI P+ +TY +I +C + EA L+ + F P YN ++ G+
Sbjct: 461 ILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGF 518
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD+ L+K R++ ++ + G +P++ Y LI+ C
Sbjct: 115 MVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILE-KFG-QPDVFAYNALINGFCKMN 172
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A R++ + F PD YN IM G
Sbjct: 173 RIDDATRVLDRMRSKDFSPDTVTYN-IMIG 201
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
G P+++ T LI +N+ +A+R++ L G +PD F YN ++ G+
Sbjct: 119 GYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDVFAYNALINGF 168
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + P + YN L+ C + + F +M GI+ NLVTY LID + T L
Sbjct: 523 RGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKK-GIELNLVTYNTLIDGLSMTGKLS 581
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L+ +S G KPD F YN+++ GY
Sbjct: 582 EAEDLLLEISRKGLKPDVFTYNSLISGY 609
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ ++L P + TYN L+ CK + + ++M+A I+P+L+T+ L+ +
Sbjct: 240 MLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKAD-HIEPSLITFNTLLKGLFKAG 298
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A ++ + D GF PD F ++ + GY
Sbjct: 299 MVEDAENVLKEMKDLGFVPDAFTFSILFDGY 329
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD+FTYN L+ ++ ++M+ S GIKP L TY +LI ++C + +
Sbjct: 593 KGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRS-GIKPTLKTYHLLI-SLCTKEGIE 650
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
RL +S KPD VYN ++ Y
Sbjct: 651 LTERLFGEMS---LKPDLLVYNGVLHCY 675
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +Y L+ CLCK L V + G+ P + Y +LID C+ + +A R
Sbjct: 492 PNVVSYGTLINCLCKGSKLLEA-QIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFR 550
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ G + + YNT++ G
Sbjct: 551 FSKEMLKKGIELNLVTYNTLIDG 573
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K + P + TYN L+ + ++ + +M + G PN+V+Y LI+ +C L
Sbjct: 452 LKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDN-GTMPNVVSYGTLINCLCKGSKL 510
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA + + D G P +YN ++ G
Sbjct: 511 LEAQIVKRDMEDRGVSPKVRIYNMLIDG 538
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
+T + L+ LCK + + + A G+ PN V Y +ID C +L A +
Sbjct: 355 YTCSILLNALCKEGKIEKAEEILGREMAK-GLVPNEVIYNTMIDGYCRKGDLVGARMKIE 413
Query: 71 ALSDSGFKPDCFVYNTIMKGY 91
A+ G KPD YN +++ +
Sbjct: 414 AMEKQGMKPDHLAYNCLIRRF 434
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+ YN ++ C+ L ++ M G+KP+ + Y LI C +
Sbjct: 383 KGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQ-GMKPDHLAYNCLIRRFCELGEME 441
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A + V+ + G P YN ++ GY
Sbjct: 442 NAEKEVNKMKLKGVSPSVETYNILIGGY 469
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P F Y ++ K + ++M+ I P++ Y +LID +C K + +A +
Sbjct: 177 PSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDR-IYPSVFIYNVLIDGLCKGKRMNDAEQ 235
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + P YNT++ GY
Sbjct: 236 LFDEMLARRLLPSLITYNTLIDGY 259
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K + D TYN L+ K L V + +D+M A ++P TY I++ C K
Sbjct: 691 MIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAR-EMEPEADTYNIIVKGHCEVK 749
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A + + GF D + N ++ G
Sbjct: 750 DYMSAYVWYREMQEKGFLLDVCIGNELVSG 779
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNLRE 64
L PD+ YN ++ C + +N QM S+G+ + TY LI L E
Sbjct: 661 LKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGL--DKTTYNSLILGQLKVGKLCE 718
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ ++ +P+ YN I+KG+
Sbjct: 719 VRSLIDEMNAREMEPEADTYNIIVKGH 745
Score = 36.2 bits (82), Expect = 0.066, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 8 PDIFTYNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
PD FT++ L K + VY + G+K N T +IL++ +C + +
Sbjct: 317 PDAFTFSILFDGYSSNEKAEAALGVY----ETAVDSGVKMNAYTCSILLNALCKEGKIEK 372
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A ++ G P+ +YNT++ GY
Sbjct: 373 AEEILGREMAKGLVPNEVIYNTMIDGY 399
Score = 33.5 bits (75), Expect = 0.40, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + ++ TYN L+ L L+ + + ++ + G+KP++ TY LI
Sbjct: 555 MLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEI-SRKGLKPDVFTYNSLISGYGFAG 613
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
N++ + L + SG KP Y+ ++
Sbjct: 614 NVQRCIALYEEMKRSGIKPTLKTYHLLI 641
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
F+Y L L + + ++ + +R GI P+ + T+L+D++ TK R + +
Sbjct: 110 FSYLLLSVLLNESKMISEAADLFFALRNE-GIYPSSDSLTLLLDHLVKTKQFRVTINVFL 168
Query: 71 ALSDSGFKPDCFVYNTIMKG 90
+ +S F+P F+Y ++
Sbjct: 169 NILESDFRPSKFMYGKAIQA 188
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P + TY LV L + +T + ++ M+ S G PN+ YTI+I+ +C + EA
Sbjct: 577 LVPSVVTYTTLVDGLIRSGDITGSFRILELMKLS-GCLPNVYPYTIIINGLCQFGRVEEA 635
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+L+SA+ DSG P+ Y ++KGY
Sbjct: 636 EKLLSAMQDSGVSPNHVTYTVMVKGY 661
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P TY L+K LC + +N D+M G KPN+ TYT+LID +C +
Sbjct: 295 KGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEM-IPRGCKPNVHTYTVLIDGLCRDGKIE 353
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA + + P YN ++ GY
Sbjct: 354 EANGVCRKMVKDRIFPSVITYNALINGY 381
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+++ Y ++ LC+ + + M+ S G+ PN VTYT+++ N L A+
Sbjct: 614 PNVYPYTIIINGLCQFGRVEEAEKLLSAMQDS-GVSPNHVTYTVMVKGYVNNGKLDRALE 672
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
V A+ + G++ + +Y+++++G+
Sbjct: 673 TVRAMVERGYELNDRIYSSLLQGF 696
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N L++ LC+ + + +M + G+ P++V+Y +LID +C ++ A +
Sbjct: 404 PNVRTFNELMEGLCRVGKPYKAVHLLKRMLDN-GLSPDIVSYNVLIDGLCREGHMNTAYK 462
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+S+++ +PDC + I+ +
Sbjct: 463 LLSSMNCFDIEPDCLTFTAIINAF 486
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P+ +Y+ L+ LC+ L + DQM G +P+ TYT+LI +C+ + +A
Sbjct: 263 APNSVSYSILIHGLCEVGRLEEAFGLKDQM-GEKGCQPSTRTYTVLIKALCDRGLIDKAF 321
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L + G KP+ Y ++ G
Sbjct: 322 NLFDEMIPRGCKPNVHTYTVLIDG 345
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + TYN L+ CK + + + M KPN+ T+ L++ +C +A+
Sbjct: 369 PSVITYNALINGYCKDGRVVPAFELLTVMEKR-ACKPNVRTFNELMEGLCRVGKPYKAVH 427
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + D+G PD YN ++ G
Sbjct: 428 LLKRMLDNGLSPDIVSYNVLIDG 450
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PDI +YN L+ LC+ + T Y + M I+P+ +T+T +I+ C A
Sbjct: 437 LSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNC-FDIEPDCLTFTAIINAFCKQGKADVA 495
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ + G D T++ G
Sbjct: 496 SAFLGLMLRKGISLDEVTGTTLIDG 520
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%)
Query: 21 CKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPD 80
C+ +L D M + PN V+Y+ILI +C L EA L + + G +P
Sbjct: 241 CRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPS 300
Query: 81 CFVYNTIMKG 90
Y ++K
Sbjct: 301 TRTYTVLIKA 310
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P++ TY L+ LC+ + +M I P+++TY LI+ C
Sbjct: 327 MIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDR-IFPSVITYNALINGYCKDG 385
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A L++ + KP+ +N +M+G
Sbjct: 386 RVVPAFELLTVMEKRACKPNVRTFNELMEG 415
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN ++ C F+ +MR+ G++P++VTY++L+D +C EA +
Sbjct: 264 PDCMTYNSILHGYCSSGQPKEAIGFLKKMRSD-GVEPDVVTYSLLMDYLCKNGRCMEARK 322
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ +++ G KP+ Y T+++GY
Sbjct: 323 IFDSMTKRGLKPEITTYGTLLQGY 346
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ C + + M S+G+KPN VTY+ LI+ C + +A+
Sbjct: 509 PNVITYNTLINGYCLAGKMDEAMKLLSGM-VSVGLKPNTVTYSTLINGYCKISRMEDALV 567
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + SG PD YN I++G
Sbjct: 568 LFKEMESSGVSPDIITYNIILQG 590
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PPD+ +Y ++ K Y+ +M GI P++VTY +I +C + + +AM
Sbjct: 193 PPDVVSYTTVINGFFKEGDSDKAYSTYHEM-LDRGILPDVVTYNSIIAALCKAQAMDKAM 251
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
+++ + +G PDC YN+I+ GY
Sbjct: 252 EVLNTMVKNGVMPDCMTYNSILHGY 276
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 35 QMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ +G+KPN++TY LI+ C + EAM+L+S + G KP+ Y+T++ GY
Sbjct: 500 ELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGY 556
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN ++ LCK +++ ++ M + G+ P+ +TY ++ C++ +EA+
Sbjct: 229 PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKN-GVMPDCMTYNSILHGYCSSGQPKEAIG 287
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + G +PD Y+ +M
Sbjct: 288 FLKKMRSDGVEPDVVTYSLLM 308
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K D + L+K LC + + + V + LG PN+ +Y IL+ +C+
Sbjct: 113 VIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDEN 172
Query: 61 NLREAMRLVSALSDS---GFKPDCFVYNTIMKGY 91
+EA+ L+ ++D G PD Y T++ G+
Sbjct: 173 RSQEALELLHMMADDRGGGSPPDVVSYTTVINGF 206
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TY+ L+ CK + +M +S G+ P+++TY I++ + T+ A
Sbjct: 542 LKPNTVTYSTLINGYCKISRMEDALVLFKEMESS-GVSPDIITYNIILQGLFQTRRTAAA 600
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L +++SG + + YN I+ G
Sbjct: 601 KELYVRITESGTQIELSTYNIILHG 625
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L P YN L+ LC C + +M GI N + + +ID+ C
Sbjct: 432 MIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEM-LDRGICLNTIFFNSIIDSHCKEG 490
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E+ +L + G KP+ YNT++ GY
Sbjct: 491 RVIESEKLFELMVRIGVKPNVITYNTLINGY 521
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD + ++ L+ K + +MR G+ PN VTY +I +C + + +AM
Sbjct: 369 PDHYVFSILICAYAKQGKVDQAMLVFSKMRQQ-GLNPNAVTYGAVIGILCKSGRVEDAML 427
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ D G P VYN+++ G
Sbjct: 428 YFEQMIDEGLSPGNIVYNSLIHG 450
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY+ L+ LCK D M G+KP + TY L+ L E
Sbjct: 299 PDVVTYSLLMDYLCKNGRCMEARKIFDSM-TKRGLKPEITTYGTLLQGYATKGALVEMHG 357
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + +G PD +V++ ++ Y
Sbjct: 358 LLDLMVRNGIHPDHYVFSILICAY 381
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ PD+ TY L+ C C+ L + + + G + + + +T L+ +C K +
Sbjct: 82 EVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKK-GFRVDAIAFTPLLKGLCADKRTSD 140
Query: 65 AMRLV-SALSDSGFKPDCFVYNTIMKG 90
AM +V +++ G P+ F YN ++KG
Sbjct: 141 AMDIVLRRMTELGCIPNVFSYNILLKG 167
Score = 36.2 bits (82), Expect = 0.057, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ TY ++ LCK + + +QM G+ P + Y LI +C A
Sbjct: 402 LNPNAVTYGAVIGILCKSGRVEDAMLYFEQM-IDEGLSPGNIVYNSLIHGLCTCNKWERA 460
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ + D G + +N+I+ +
Sbjct: 461 EELILEMLDRGICLNTIFFNSIIDSH 486
Score = 35.4 bits (80), Expect = 0.093, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L P+I TY L++ +L ++ +D M + GI P+ ++ILI +
Sbjct: 330 RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN-GIHPDHYVFSILICAYAKQGKVD 388
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
+AM + S + G P+ Y ++
Sbjct: 389 QAMLVFSKMRQQGLNPNAVTYGAVI 413
>sp|Q9FND8|PP409_ARATH Pentatricopeptide repeat-containing protein At5g40400
OS=Arabidopsis thaliana GN=At5g40400 PE=2 SV=1
Length = 610
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN LV C+ L + ++ ++ + P+LVTYT LI +C +REA +
Sbjct: 269 PDLVTYNTLVSSYCRRGRLKEAF-YLYKIMYRRRVVPDLVTYTSLIKGLCKDGRVREAHQ 327
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ D G KPDC YNT++ Y
Sbjct: 328 TFHRMVDRGIKPDCMSYNTLIYAY 351
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ +T+N L C + V +F+++M G +P+LVTY L+ + C L+EA
Sbjct: 234 PNTYTFNILTNVFCNDSNFREVDDFLEKMEEE-GFEPDLVTYNTLVSSYCRRGRLKEAFY 292
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + PD Y +++KG
Sbjct: 293 LYKIMYRRRVVPDLVTYTSLIKG 315
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 40 LGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+GI PN T+ IL + CN N RE + + + GF+PD YNT++ Y
Sbjct: 230 VGIHPNTYTFNILTNVFCNDSNFREVDDFLEKMEEEGFEPDLVTYNTLVSSY 281
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ PD+ TY L+K LCK + + +M GIKP+ ++Y LI C ++
Sbjct: 300 RRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRM-VDRGIKPDCMSYNTLIYAYCKEGMMQ 358
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ +L+ + + PD F I++G+
Sbjct: 359 QSKKLLHEMLGNSVVPDRFTCKVIVEGF 386
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TYN L++ L +C ++ +++ + + TY LI +C REA L++
Sbjct: 449 TYNNLIESLSRCDAIEEALVLKGKLKNQNQVL-DAKTYRALIGCLCRIGRNREAESLMAE 507
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ DS KPD F+ ++ GY
Sbjct: 508 MFDSEVKPDSFICGALVYGY 527
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K + +++T + ++ C C+CR L ++ + ++ LG +PN +T++ LI+ +C +
Sbjct: 116 LKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKI-IKLGYEPNTITFSTLINGLCLEGRV 174
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ LV + + G KPD NT++ G
Sbjct: 175 SEALELVDRMVEMGHKPDLITINTLVNG 202
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD TY L+ CK L VD M S G PN+ T+ ILI+ C
Sbjct: 359 MIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLM-VSKGCDPNIRTFNILINGYCKAN 417
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + L +S G D YNT+++G+
Sbjct: 418 RIDDGLELFRKMSLRGVVADTVTYNTLIQGF 448
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
+ + D TYN L++ C+ L +M S + PN+VTY IL+D +C+
Sbjct: 431 LRGVVADTVTYNTLIQGFCELGKLNVAKELFQEM-VSRKVPPNIVTYKILLDGLCDNGES 489
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ + + S + D +YN I+ G
Sbjct: 490 EKALEIFEKIEKSKMELDIGIYNIIIHG 517
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ DI YN ++ +C + ++ + G+KP + TY I+I +C L E
Sbjct: 503 KMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLK-GVKPGVKTYNIMIGGLCKKGPLSE 561
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L + + G PD + YN +++ +
Sbjct: 562 AELLFRKMEEDGHAPDGWTYNILIRAH 588
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +++ P++ T++ L+ K L +M GI P+ +TYT LID C
Sbjct: 324 MIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEM-IHRGIAPDTITYTSLIDGFCKEN 382
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+L +A ++V + G P+ +N ++ GY
Sbjct: 383 HLDKANQMVDLMVSKGCDPNIRTFNILINGY 413
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P+ T++ L+ LC ++ VD+M +G KP+L+T L++ +C + EAM
Sbjct: 155 EPNTITFSTLINGLCLEGRVSEALELVDRM-VEMGHKPDLITINTLVNGLCLSGKEAEAM 213
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
L+ + + G +P+ Y ++
Sbjct: 214 LLIDKMVEYGCQPNAVTYGPVL 235
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + D Y+ ++ LCK SL +N ++M GI N++TY ILI CN
Sbjct: 257 RNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMK-GITTNIITYNILIGGFCNAGRWD 315
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +L+ + P+ ++ ++ +
Sbjct: 316 DGAKLLRDMIKRKINPNVVTFSVLIDSF 343
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T N LV LC +D+M G +PN VTY +++ +C + AM
Sbjct: 191 PDLITINTLVNGLCLSGKEAEAMLLIDKM-VEYGCQPNAVTYGPVLNVMCKSGQTALAME 249
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + + K D Y+ I+ G
Sbjct: 250 LLRKMEERNIKLDAVKYSIIIDG 272
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TY ++ +CK + +M IK + V Y+I+ID +C +L A
Sbjct: 226 PNAVTYGPVLNVMCKSGQTALAMELLRKMEER-NIKLDAVKYSIIIDGLCKHGSLDNAFN 284
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G + YN ++ G+
Sbjct: 285 LFNEMEMKGITTNIITYNILIGGF 308
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K + P + TYN ++ LCK L+ +M G P+ TY ILI
Sbjct: 534 LPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEED-GHAPDGWTYNILIRAHLGDG 592
Query: 61 NLREAMRLVSALSDSGFKPDC 81
+ ++++L+ L GF D
Sbjct: 593 DATKSVKLIEELKRCGFSVDA 613
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TY L+ LCK L + + +M +G++PN+ TY +++ +C + N+ EA++
Sbjct: 454 PNVVTYTTLIDGLCKEGDLDSANELLHEM-WKIGLQPNIFTYNSIVNGLCKSGNIEEAVK 512
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
LV +G D Y T+M Y
Sbjct: 513 LVGEFEAAGLNADTVTYTTLMDAY 536
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD T+ L+ CK + + + M G PN+VTYT LID +C +L
Sbjct: 415 KGLEPDSVTFTELINGYCKAGHMKDAFRVHNHM-IQAGCSPNVVTYTTLIDGLCKEGDLD 473
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A L+ + G +P+ F YN+I+ G
Sbjct: 474 SANELLHEMWKIGLQPNIFTYNSIVNG 500
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+IFTYN +V LCK ++ V + A+ G+ + VTYT L+D C + + +A
Sbjct: 487 LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAA-GLNADTVTYTTLMDAYCKSGEMDKA 545
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ + G +P +N +M G+
Sbjct: 546 QEILKEMLGKGLQPTIVTFNVLMNGF 571
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCK-CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K L P+ + Y ++ LC+ C+ F + +R GI P+ V YT LID C ++
Sbjct: 310 KGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ--GILPDTVVYTTLIDGFCKRGDI 367
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
R A + + PD Y I+ G+
Sbjct: 368 RAASKFFYEMHSRDITPDVLTYTAIISGF 396
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD Y L+ CK + F +M S I P+++TYT +I C
Sbjct: 342 MIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMH-SRDITPDVLTYTAIISGFCQIG 400
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++ EA +L + G +PD + ++ GY
Sbjct: 401 DMVEAGKLFHEMFCKGLEPDSVTFTELINGY 431
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P+ T+N LVK C +L M S G+ P+ TY L+ C +
Sbjct: 587 MLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDM-CSRGVGPDGKTYENLVKGHCKAR 645
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N++EA L + GF Y+ ++KG+
Sbjct: 646 NMKEAWFLFQEMKGKGFSVSVSTYSVLIKGF 676
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/93 (18%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 1 LIFKQLPP-----DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
++F++ P ++ +YN ++ +C+ + ++ + M G P++++Y+ +++
Sbjct: 232 IVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELK-GYTPDVISYSTVVNG 290
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
C L + +L+ + G KP+ ++Y +I+
Sbjct: 291 YCRFGELDKVWKLIEVMKRKGLKPNSYIYGSII 323
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD TY LVK CK R++ + +M+ G ++ TY++LI K
Sbjct: 625 RGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGK-GFSVSVSTYSVLIKGFLKRKKFL 683
Query: 64 EAMRLVSALSDSGFKPDCFVYN 85
EA + + G D +++
Sbjct: 684 EAREVFDQMRREGLAADKEIFD 705
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 39 SLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+G+ N+ +Y I+I VC ++EA L+ + G+ PD Y+T++ GY
Sbjct: 239 EVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGY 291
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++TYN ++ LCK + +DQM + PN VTY LI +C + EA
Sbjct: 328 PDVYTYNSVISGLCKLGEVKEAVEVLDQM-ITRDCSPNTVTYNTLISTLCKENQVEEATE 386
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L L+ G PD +N++++G
Sbjct: 387 LARVLTSKGILPDVCTFNSLIQG 409
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K + PD+ T+N L++ LC R+ ++MR S G +P+ TY +LID++C+
Sbjct: 391 LTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMR-SKGCEPDEFTYNMLIDSLCSKG 449
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA+ ++ + SG YNT++ G+
Sbjct: 450 KLDEALNMLKQMELSGCARSVITYNTLIDGF 480
Score = 55.5 bits (132), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K PD FTYN L+ LC L N + QM S G +++TY LID C R
Sbjct: 429 KGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELS-GCARSVITYNTLIDGFCKANKTR 487
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA + + G + YNT++ G
Sbjct: 488 EAEEIFDEMEVHGVSRNSVTYNTLIDG 514
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P+ TYN L+ LCK + ++ S GI P++ T+ LI +C T+
Sbjct: 356 MITRDCSPNTVTYNTLISTLCKENQVEEATELA-RVLTSKGILPDVCTFNSLIQGLCLTR 414
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
N R AM L + G +PD F YN ++
Sbjct: 415 NHRVAMELFEEMRSKGCEPDEFTYNMLI 442
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TYN L+ LCK R + +DQM G KP+ TY L+ + C ++++A +V A
Sbjct: 507 TYNTLIDGLCKSRRVEDAAQLMDQMIME-GQKPDKYTYNSLLTHFCRGGDIKKAADIVQA 565
Query: 72 LSDSGFKPDCFVYNTIMKG 90
++ +G +PD Y T++ G
Sbjct: 566 MTSNGCEPDIVTYGTLISG 584
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ TYN L+ CK D+M G+ N VTY LID +C ++ + +A +L+
Sbjct: 470 VITYNTLIDGFCKANKTREAEEIFDEMEVH-GVSRNSVTYNTLIDGLCKSRRVEDAAQLM 528
Query: 70 SALSDSGFKPDCFVYNTIMKGY 91
+ G KPD + YN+++ +
Sbjct: 529 DQMIMEGQKPDKYTYNSLLTHF 550
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 41/79 (51%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+ N +V CK + NF+ +M G P+ T+ L++ +C +++ A+ ++
Sbjct: 261 SVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDV 320
Query: 72 LSDSGFKPDCFVYNTIMKG 90
+ G+ PD + YN+++ G
Sbjct: 321 MLQEGYDPDVYTYNSVISG 339
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL-GIKPNLVTYTILIDNVCNTKNLRE 64
L PD YN ++ L SL V + + S+ GIKP++ T+ +LI +C LR
Sbjct: 150 LKPDTHFYNRMLNLLVDGNSLKLVE--ISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRP 207
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+ ++ + G PD + T+M+GY
Sbjct: 208 AILMLEDMPSYGLVPDEKTFTTVMQGY 234
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD +TYN L+ C+ + + V M ++ G +P++VTY LI +C
Sbjct: 531 MIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSN-GCEPDIVTYGTLISGLCKAG 589
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A +L+ ++ G YN +++G
Sbjct: 590 RVEVASKLLRSIQMKGINLTPHAYNPVIQG 619
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +T+N LV LCK + +D M G P++ TY +I +C ++EA+
Sbjct: 293 PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQE-GYDPDVYTYNSVISGLCKLGEVKEAVE 351
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
++ + P+ YNT++
Sbjct: 352 VLDQMITRDCSPNTVTYNTLI 372
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ T+N L+K LC+ L ++ M S G+ P+ T+T ++ +L A
Sbjct: 185 IKPDVSTFNVLIKALCRAHQLRPAILMLEDM-PSYGLVPDEKTFTTVMQGYIEEGDLDGA 243
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+R+ + + G N I+ G+
Sbjct: 244 LRIREQMVEFGCSWSNVSVNVIVHGF 269
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN-LREAMRLVSA 71
YN +++ L + R T N +M P+ V+Y I+ +CN +REA+ +
Sbjct: 613 YNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVE 672
Query: 72 LSDSGFKPD 80
L + GF P+
Sbjct: 673 LLEKGFVPE 681
>sp|P0C043|PP318_ARATH Putative pentatricopeptide repeat-containing protein At4g17915
OS=Arabidopsis thaliana GN=At4g17915 PE=3 SV=1
Length = 463
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P TYN L+ LCKC + +M++ KP L+TY ILI+ +C ++ + A
Sbjct: 150 LNPGPDTYNVLLDALCKCGYIDNALELFKEMQSRF--KPELMTYNILINGLCKSRRVGTA 207
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+++ L SG+ P+ Y TI+K Y
Sbjct: 208 KWMLTELKKSGYTPNAVTYTTILKLY 233
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 14 NFLVKCLCKCRSLTTVYNFV-DQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
N V LCK R L + + D +R LG+ P++VTY LI C + EA + +
Sbjct: 17 NICVDSLCKFRKLEKAESLIIDGIR--LGVDPDVVTYNTLISGYCRFVGIEEAYAVTRRM 74
Query: 73 SDSGFKPDCFVYNTIMKG 90
D+G +PD YN+++ G
Sbjct: 75 RDAGIRPDVATYNSLIAG 92
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 2 IFKQL----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
+FK++ P++ TYN L+ LCK R + T + +++ S G PN VTYT ++
Sbjct: 176 LFKEMQSRFKPELMTYNILINGLCKSRRVGTAKWMLTELKKS-GYTPNAVTYTTILKLYF 234
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
T+ +R ++L + G+ D + Y ++
Sbjct: 235 KTRRIRRGLQLFLEMKREGYTYDGYAYFAVV 265
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ C+ + Y +MR + GI+P++ TY LI L +
Sbjct: 46 PDVVTYNTLISGYCRFVGIEEAYAVTRRMRDA-GIRPDVATYNSLIAGAARRLMLDHVLY 104
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + G PD + YNT+M Y
Sbjct: 105 LFDEMLEWGIYPDLWSYNTLMCCY 128
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+++YN L+ C K + + + G+ P TY +L+D +C + A+
Sbjct: 116 PDLWSYNTLMCCYFKLGKHEEAFRVLYKDLQLAGLNPGPDTYNVLLDALCKCGYIDNALE 175
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + S FKP+ YN ++ G
Sbjct: 176 LFKEMQ-SRFKPELMTYNILING 197
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 51 ILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
I +D++C + L +A L+ G PD YNT++ GY
Sbjct: 18 ICVDSLCKFRKLEKAESLIIDGIRLGVDPDVVTYNTLISGY 58
>sp|Q9SAB4|PPR33_ARATH Pentatricopeptide repeat-containing protein At1g11630,
mitochondrial OS=Arabidopsis thaliana GN=At1g11630 PE=1
SV=1
Length = 405
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ TYN +++CLCK + +D + S ++PN VTY++LI C+ +NL EAM L
Sbjct: 252 VATYNIMIQCLCKRKKSAEAKALIDGV-MSCRMRPNSVTYSLLIHGFCSEENLDEAMNLF 310
Query: 70 SALSDSGFKPDCFVYNTIM 88
+ +G+KPD Y T++
Sbjct: 311 EVMVCNGYKPDSECYFTLI 329
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TYN +++ LC+ S ++ Y+ V +M IKP ++ ++ID + E
Sbjct: 178 IEPDLETYNRMIRVLCESGSTSSSYSIVAEMERKW-IKPTAASFGLMIDGFYKEEKFDEV 236
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
+++ + + G YN +++
Sbjct: 237 RKVMRMMDEFGVHVGVATYNIMIQ 260
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ D++TY+ + C C+ L+ + +M LG +P++VT + L++ C++K + +A
Sbjct: 114 ISHDLYTYSIFINCFCRRSQLSLALAVLAKM-MKLGYEPDIVTLSSLLNGYCHSKRISDA 172
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ LV + + G+KPD F + T++ G
Sbjct: 173 VALVDQMVEMGYKPDTFTFTTLIHG 197
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD+FTY+ L+ CLC + + M I PN+VT++ LID L
Sbjct: 287 KGIRPDVFTYSSLISCLCNYGRWSDASRLLSDM-IERKINPNVVTFSALIDAFVKEGKLV 345
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L + PD F Y++++ G+
Sbjct: 346 EAEKLYDEMIKRSIDPDIFTYSSLINGF 373
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 1 LIFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
++FKQ+ P+I TYN L+ LCK L + ++ S ++P++ TY I+I+
Sbjct: 454 MVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRST-MEPDIYTYNIMIEG 512
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+C + + L LS G P+ YNT++ G+
Sbjct: 513 MCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGF 548
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PDIFTY+ L+ C L + + M S PN+VTY+ LI C K
Sbjct: 354 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM-ISKDCFPNVVTYSTLIKGFCKAK 412
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E M L +S G + Y T++ G+
Sbjct: 413 RVEEGMELFREMSQRGLVGNTVTYTTLIHGF 443
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD+ TY +V LCK + + + +M I+ ++V Y +ID +C K
Sbjct: 214 MVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKG-KIEADVVIYNTIIDGLCKYK 272
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
++ +A+ L + + + G +PD F Y++++
Sbjct: 273 HMDDALNLFTEMDNKGIRPDVFTYSSLI 300
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L + TY L+ + R QM S+G+ PN++TY IL+D +C L
Sbjct: 427 RGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM-VSVGVHPNILTYNILLDGLCKNGKLA 485
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+AM + L S +PD + YN +++G
Sbjct: 486 KAMVVFEYLQRSTMEPDIYTYNIMIEG 512
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PDI T + L+ C + ++ VDQM +G KP+ T+T LI + EA+
Sbjct: 150 EPDIVTLSSLLNGYCHSKRISDAVALVDQM-VEMGYKPDTFTFTTLIHGLFLHNKASEAV 208
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
LV + G +PD Y T++ G
Sbjct: 209 ALVDQMVQRGCQPDLVTYGTVVNG 232
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FT+ L+ L + VDQM G +P+LVTY +++ +C ++ A+
Sbjct: 186 PDTFTFTTLIHGLFLHNKASEAVALVDQM-VQRGCQPDLVTYGTVVNGLCKRGDIDLALS 244
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + + D +YNTI+ G
Sbjct: 245 LLKKMEKGKIEADVVIYNTIIDG 267
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I +N L+ + K V + +QM+ +LGI +L TY+I I+ C L A+
Sbjct: 81 PSIVEFNKLLSAVAKMNKFELVISLGEQMQ-TLGISHDLYTYSIFINCFCRRSQLSLALA 139
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ + G++PD ++++ GY
Sbjct: 140 VLAKMMKLGYEPDIVTLSSLLNGY 163
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ D+ YN ++ LCK + + N +M GI+P++ TY+ LI +CN +
Sbjct: 253 KIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNK-GIRPDVFTYSSLISCLCNYGRWSD 311
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A RL+S + + P+ ++ ++ +
Sbjct: 312 ASRLLSDMIERKINPNVVTFSALIDAF 338
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ TY+ L+K CK + + +M + G+ N VTYT LI +
Sbjct: 389 MISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREM-SQRGLVGNTVTYTTLIHGFFQAR 447
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A + + G P+ YN ++ G
Sbjct: 448 DCDNAQMVFKQMVSVGVHPNILTYNILLDG 477
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +++ P++ T++ L+ K L D+M I P++ TY+ LI+ C
Sbjct: 319 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM-IKRSIDPDIFTYSSLINGFCMHD 377
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA + + P+ Y+T++KG+
Sbjct: 378 RLDEAKHMFELMISKDCFPNVVTYSTLIKGF 408
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K + P++ YN ++ C+ S + + +M+ G PN TY LI
Sbjct: 529 LSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKED-GPLPNSGTYNTLIRARLRDG 587
Query: 61 NLREAMRLVSALSDSGFKPDC 81
+ + L+ + GF D
Sbjct: 588 DREASAELIKEMRSCGFAGDA 608
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TYN +++ LC L +D+M P+++TYTILI+ C + A
Sbjct: 200 VSPDVVTYNTILRSLCDSGKLKQAMEVLDRM-LQRDCYPDVITYTILIEATCRDSGVGHA 258
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
M+L+ + D G PD YN ++ G
Sbjct: 259 MKLLDEMRDRGCTPDVVTYNVLVNG 283
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L++ C+ + +D+MR G P++VTY +L++ +C L EA++
Sbjct: 237 PDVITYTILIEATCRDSGVGHAMKLLDEMR-DRGCTPDVVTYNVLVNGICKEGRLDEAIK 295
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
++ + SG +P+ +N I++
Sbjct: 296 FLNDMPSSGCQPNVITHNIILR 317
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN LV +CK L F++ M +S G +PN++T+ I++ ++C+T +A +
Sbjct: 272 PDVVTYNVLVNGICKEGRLDEAIKFLNDMPSS-GCQPNVITHNIILRSMCSTGRWMDAEK 330
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L++ + GF P +N ++
Sbjct: 331 LLADMLRKGFSPSVVTFNILI 351
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PDI TYN ++ LCK + ++Q+ +S G P L+TY +ID + +A++
Sbjct: 412 PDIVTYNTMLTALCKDGKVEDAVEILNQL-SSKGCSPVLITYNTVIDGLAKAGKTGKAIK 470
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ + KPD Y++++ G
Sbjct: 471 LLDEMRAKDLKPDTITYSSLVGG 493
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
I +++P P+ +YN L+ CK + + ++++M S G P++VTY ++ +
Sbjct: 366 ILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM-VSRGCYPDIVTYNTMLTAL 424
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
C + +A+ +++ LS G P YNT++ G
Sbjct: 425 CKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDG 458
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L K P + TYN ++ L K +D+MRA +KP+ +TY+ L+ +
Sbjct: 440 LSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAK-DLKPDTITYSSLVGGLSREG 498
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA++ G +P+ +N+IM G
Sbjct: 499 KVDEAIKFFHEFERMGIRPNAVTFNSIMLG 528
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN ++ CK + + +D+M S P++VTY ++ ++C++ L++AM
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSVLDRMSVS----PDVVTYNTILRSLCDSGKLKQAME 225
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
++ + PD Y +++
Sbjct: 226 VLDRMLQRDCYPDVITYTILIE 247
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P + T+N L+ LC+ L + +++M G +PN ++Y L+ C K
Sbjct: 335 MLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKM-PQHGCQPNSLSYNPLLHGFCKEK 393
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ A+ + + G PD YNT++
Sbjct: 394 KMDRAIEYLERMVSRGCYPDIVTYNTML 421
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 8 PDIFTYNFLVKCLCKC-RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P++ T+N +++ +C R + D +R G P++VT+ ILI+ +C L A+
Sbjct: 307 PNVITHNIILRSMCSTGRWMDAEKLLADMLRK--GFSPSVVTFNILINFLCRKGLLGRAI 364
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
++ + G +P+ YN ++ G+
Sbjct: 365 DILEKMPQHGCQPNSLSYNPLLHGF 389
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L PD TY+ LV L + + F + +GI+PN VT+ ++ +C ++
Sbjct: 478 KDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFE-RMGIRPNAVTFNSIMLGLCKSRQTD 536
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ + + + G KP+ Y +++G
Sbjct: 537 RAIDFLVFMINRGCKPNETSYTILIEG 563
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ T+N ++ LCK R +F+ M + G KPN +YTILI+ + +EA+
Sbjct: 517 PNAVTFNSIMLGLCKSRQTDRAIDFLVFM-INRGCKPNETSYTILIEGLAYEGMAKEALE 575
Query: 68 LVSALSDSGF 77
L++ L + G
Sbjct: 576 LLNELCNKGL 585
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ + N L + + + L + F++ M G P+++ T LI C R+A ++
Sbjct: 102 DVESNNHL-RQMVRTGELEEGFKFLENM-VYHGNVPDIIPCTTLIRGFCRLGKTRKAAKI 159
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ L SG PD YN ++ GY
Sbjct: 160 LEILEGSGAVPDVITYNVMISGY 182
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ D++TY+ + C C+ L+ + +M LG +P++VT + L++ C++K + +A
Sbjct: 114 ISHDLYTYSIFINCFCRRSQLSLALAVLAKM-MKLGYEPDIVTLSSLLNGYCHSKRISDA 172
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ LV + + G+KPD F + T++ G
Sbjct: 173 VALVDQMVEMGYKPDTFTFTTLIHG 197
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ +IF YN +++ +CK + ++ SL IKP++VTY +I +C+ + L+E
Sbjct: 498 EMELNIFIYNTMIEGMCKAGKVGEAWDLF----CSLSIKPDVVTYNTMISGLCSKRLLQE 553
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A L + + G P+ YNT+++
Sbjct: 554 ADDLFRKMKEDGTLPNSGTYNTLIRA 579
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PDI T + L+ C + ++ VDQM +G KP+ T+T LI + EA+
Sbjct: 150 EPDIVTLSSLLNGYCHSKRISDAVALVDQM-VEMGYKPDTFTFTTLIHGLFLHNKASEAV 208
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
LV + G +PD Y T++ G
Sbjct: 209 ALVDQMVQRGCQPDLVTYGTVVNG 232
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ ++ +N ++ LCK R + + +M GI+PN+VTY LI+ +CN +
Sbjct: 253 RIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETK-GIRPNVVTYNSLINCLCNYGRWSD 311
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A RL+S + + P+ +N ++ +
Sbjct: 312 ASRLLSNMLEKKINPNVVTFNALIDAF 338
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TYN L+ CLC + + M I PN+VT+ LID L
Sbjct: 287 KGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEK-KINPNVVTFNALIDAFFKEGKLV 345
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L + PD YN ++ G+
Sbjct: 346 EAEKLHEEMIQRSIDPDTITYNLLINGF 373
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I +N L+ + K V + +QM+ +LGI +L TY+I I+ C L A+
Sbjct: 81 PSIVEFNKLLSAVAKMNKFELVISLGEQMQ-TLGISHDLYTYSIFINCFCRRSQLSLALA 139
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ + G++PD ++++ GY
Sbjct: 140 VLAKMMKLGYEPDIVTLSSLLNGY 163
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 1 LIFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
++FKQ+ P DI TY+ L+ LC L T ++ S ++ N+ Y +I+
Sbjct: 454 MVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKS-EMELNIFIYNTMIEG 512
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+C + EA L +LS KPD YNT++ G
Sbjct: 513 MCKAGKVGEAWDLFCSLS---IKPDVVTYNTMISG 544
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PD TYN L+ C L M S PN+ TY LI+ C K
Sbjct: 354 MIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFM-VSKDCLPNIQTYNTLINGFCKCK 412
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + + L +S G + Y TI++G+
Sbjct: 413 RVEDGVELFREMSQRGLVGNTVTYTTIIQGF 443
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FT+ L+ L + VDQM G +P+LVTY +++ +C ++ A+
Sbjct: 186 PDTFTFTTLIHGLFLHNKASEAVALVDQM-VQRGCQPDLVTYGTVVNGLCKRGDIDLALN 244
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L++ + + K + ++NTI+
Sbjct: 245 LLNKMEAARIKANVVIFNTII 265
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P++++Y LV CK + YN +++M A G+KPN V + LI C +
Sbjct: 418 KGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSAD-GLKPNTVGFNCLISAFCKEHRIP 476
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ + + G KPD + +N+++ G
Sbjct: 477 EAVEIFREMPRKGCKPDVYTFNSLISG 503
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 2 IFKQLP-----PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IF+++P PD++T+N L+ LC+ + + M S G+ N VTY LI+
Sbjct: 481 IFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDM-ISEGVVANTVTYNTLINAF 539
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
++EA +LV+ + G D YN+++KG
Sbjct: 540 LRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKG 573
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TYN L+ K + + MR G KPN+ +YTIL+D C + EA
Sbjct: 387 PDVCTYNSLIYGYWKEGLVGLALEVLHDMRNK-GCKPNVYSYTILVDGFCKLGKIDEAYN 445
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ +S G KP+ +N ++ +
Sbjct: 446 VLNEMSADGLKPNTVGFNCLISAF 469
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++F+ P D TYN L+K LC+ + + ++M G P+ ++ ILI+ +C +
Sbjct: 555 MVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRD-GHAPSNISCNILINGLCRSG 613
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ + G PD +N+++ G
Sbjct: 614 MVEEAVEFQKEMVLRGSTPDIVTFNSLING 643
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ +++PP +FT+ ++K C + + + + M G PN V Y LI ++
Sbjct: 208 MLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKH-GCVPNSVIYQTLIHSLSKCN 266
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA++L+ + G PD +N ++ G
Sbjct: 267 RVNEALQLLEEMFLMGCVPDAETFNDVILG 296
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + N L+ LC+ + F +M G P++VT+ LI+ +C + + +
Sbjct: 597 PSNISCNILINGLCRSGMVEEAVEFQKEM-VLRGSTPDIVTFNSLINGLCRAGRIEDGLT 655
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ L G PD +NT+M
Sbjct: 656 MFRKLQAEGIPPDTVTFNTLM 676
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ Y L+ L KC + +++M +G P+ T+ +I +C + EA +
Sbjct: 250 PNSVIYQTLIHSLSKCNRVNEALQLLEEMFL-MGCVPDAETFNDVILGLCKFDRINEAAK 308
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+V+ + GF PD Y +M G
Sbjct: 309 MVNRMLIRGFAPDDITYGYLMNG 331
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PDI T+N L+ LC+ + +++A GI P+ VT+ L+ +C
Sbjct: 625 MVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAE-GIPPDTVTFNTLMSWLCKGG 683
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ +A L+ + GF P+ ++ +++
Sbjct: 684 FVYDACLLLDEGIEDGFVPNHRTWSILLQ 712
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD TY +L+ LCK + + ++ KP +V + LI
Sbjct: 313 MLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIP-----KPEIVIFNTLIHGFVTHG 367
Query: 61 NLREAMRLVSALSDS-GFKPDCFVYNTIMKGY 91
L +A ++S + S G PD YN+++ GY
Sbjct: 368 RLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGY 399
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
+ +PPD T+N L+ LCK + +D+ G PN T++IL+ ++ + L
Sbjct: 663 EGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIED-GFVPNHRTWSILLQSIIPQETL 720
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PDI TYN L+ CLC + V+ ++ S + +++TY I+I +C T L+EA
Sbjct: 390 VSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKS-EMDVDIITYNIIIQGLCRTDKLKEA 448
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L +L+ G KPD Y T++ G
Sbjct: 449 WCLFRSLTRKGVKPDAIAYITMISG 473
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P++FTYN L+ C L D M S G P++VTY LI C +K
Sbjct: 280 MIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLM-VSKGCFPDVVTYNTLITGFCKSK 338
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + M+L ++ G D F YNT++ GY
Sbjct: 339 RVEDGMKLFCEMTYQGLVGDAFTYNTLIHGY 369
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ ++ L D FTYN L+ C+ L ++M G+ P++VTY IL+D +CN
Sbjct: 350 MTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRM-VDCGVSPDIVTYNILLDCLCNNG 408
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A+ +V L S D YN I++G
Sbjct: 409 KIEKALVMVEDLQKSEMDVDIITYNIIIQG 438
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ D++++ L+ C C+C L+ + +M LG +P++VT L++ C +EA
Sbjct: 110 ISHDLYSFTILIHCFCRCSRLSLALALLGKM-MKLGFRPSIVTLGSLLNGFCQGNRFQEA 168
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ LV ++ GF P+ +YNT++ G
Sbjct: 169 VSLVDSMDGFGFVPNVVIYNTVING 193
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ DI TYN +++ LC+ L + + G+KP+ + Y +I +C RE
Sbjct: 424 EMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRK-GVKPDAIAYITMISGLCRKGLQRE 482
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A +L + + GF P +Y+ ++ +
Sbjct: 483 ADKLCRRMKEDGFMPSERIYDETLRDH 509
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + D TYN L+ L T + M I PN++ +T LID NL
Sbjct: 213 KGIRADAVTYNTLISGLSNSGRWTDAARLLRDM-VKRKIDPNVIFFTALIDTFVKEGNLL 271
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA L + P+ F YN+++ G+
Sbjct: 272 EARNLYKEMIRRSVVPNVFTYNSLINGF 299
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ YN ++ LCK R L M GI+ + VTY LI + N+ +A R
Sbjct: 182 PNVVIYNTVINGLCKNRDLNNALEVFYCMEKK-GIRADAVTYNTLISGLSNSGRWTDAAR 240
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + P+ + ++
Sbjct: 241 LLRDMVKRKIDPNVIFFTALI 261
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic
OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+ YN ++ L K L ++M+ S GI P+L TY LI N+ + EA
Sbjct: 992 LNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEA 1051
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ + + +G +P+ F +N +++GY
Sbjct: 1052 GKIYNEIQRAGLEPNVFTFNALIRGY 1077
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L+ R L +V F +M G P++VT+TIL+D +C N EA
Sbjct: 326 PDRVTYITLLDRFSDNRDLDSVKQFWSEMEKD-GHVPDVVTFTILVDALCKAGNFGEAFD 384
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + D G P+ YNT++ G
Sbjct: 385 TLDVMRDQGILPNLHTYNTLICG 407
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ T+ LV LCK + ++ +D MR GI PNL TY LI + L +A+
Sbjct: 361 PDVVTFTILVDALCKAGNFGEAFDTLDVMRDQ-GILPNLHTYNTLICGLLRVHRLDDALE 419
Query: 68 LVSALSDSGFKPDCFVY 84
L + G KP + Y
Sbjct: 420 LFGNMESLGVKPTAYTY 436
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P + TY+ L+ L K R + +V + +M +LG+KPN+ T+TI I +
Sbjct: 214 MILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEME-TLGLKPNVYTFTICIRVLGRAG 272
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
+ EA ++ + D G PD Y ++
Sbjct: 273 KINEAYEILKRMDDEGCGPDVVTYTVLI 300
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+++T+ ++ L + + Y + +M G P++VTYT+LID +C + L A
Sbjct: 254 LKPNVYTFTICIRVLGRAGKINEAYEILKRMDDE-GCGPDVVTYTVLIDALCTARKLDCA 312
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
+ + KPD Y T++
Sbjct: 313 KEVFEKMKTGRHKPDRVTYITLL 335
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+L P + TYN L+ L K + + M G PN +T+ L D +C +
Sbjct: 568 KLKPTVVTYNTLLAGLGKNGKIQEAIELFEGM-VQKGCPPNTITFNTLFDCLCKNDEVTL 626
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A++++ + D G PD F YNTI+ G
Sbjct: 627 ALKMLFKMMDMGCVPDVFTYNTIIFG 652
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ YN L+ K +M G++P+L TY++L+D +C + E +
Sbjct: 924 PNCAIYNILINGFGKAGEADAACALFKRM-VKEGVRPDLKTYSVLVDCLCMVGRVDEGLH 982
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L +SG PD YN I+ G
Sbjct: 983 YFKELKESGLNPDVVCYNLIING 1005
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ TY L+ LC R L ++M+ KP+ VTY L+D + ++L +
Sbjct: 291 PDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRH-KPDRVTYITLLDRFSDNRDLDSVKQ 349
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
S + G PD + ++
Sbjct: 350 FWSEMEKDGHVPDVVTFTILV 370
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TYN ++KC K + + +M + G +P+++ LI+ + + EA
Sbjct: 499 LVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMEN-GCEPDVIVVNSLINTLYKADRVDEA 557
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
++ + + KP YNT++ G
Sbjct: 558 WKMFMRMKEMKLKPTVVTYNTLLAG 582
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+N ++ L K ++ + + + P TY LID + + L EA +L
Sbjct: 857 THNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEG 916
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ D G +P+C +YN ++ G+
Sbjct: 917 MLDYGCRPNCAIYNILINGF 936
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P +TY + K + ++M+ GI PN+V + ++ REA
Sbjct: 429 VKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTK-GIAPNIVACNASLYSLAKAGRDREA 487
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
++ L D G PD YN +MK Y
Sbjct: 488 KQIFYGLKDIGLVPDSVTYNMMMKCY 513
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PP+ T+N L CLCK +T + +M +G P++ TY +I +
Sbjct: 599 MVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKM-MDMGCVPDVFTYNTIIFGLVKNG 657
Query: 61 NLREAM 66
++EAM
Sbjct: 658 QVKEAM 663
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 35/76 (46%)
Query: 16 LVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75
+++ CK +++ ++ LG++P L TY +LI + + A + + +
Sbjct: 755 IIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKST 814
Query: 76 GFKPDCFVYNTIMKGY 91
G PD YN ++ Y
Sbjct: 815 GCIPDVATYNFLLDAY 830
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70
++YN L+ L K R T +M G +P+L TY+ L+ + +++ M L+
Sbjct: 189 YSYNGLIHLLLKSRFCTEAMEVYRRMILE-GFRPSLQTYSSLMVGLGKRRDIDSVMGLLK 247
Query: 71 ALSDSGFKPDCFVY 84
+ G KP+ + +
Sbjct: 248 EMETLGLKPNVYTF 261
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 31/49 (63%)
Query: 40 LGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88
+G+ P+ VTY +++ + EA++L+S + ++G +PD V N+++
Sbjct: 497 IGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLI 545
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD++TYN L+ L + ++++ + G++PN+ T+ LI +
Sbjct: 1026 RGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRA-GLEPNVFTFNALIRGYSLSGKPE 1084
Query: 64 EAMRLVSALSDSGFKPDCFVYNTI 87
A + + GF P+ Y +
Sbjct: 1085 HAYAVYQTMVTGGFSPNTGTYEQL 1108
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P + TYN L+ L + + + Q++ S G P++ TY L+D + + E
Sbjct: 781 VQPKLPTYNLLIGGLLEADMIEIAQDVFLQVK-STGCIPDVATYNFLLDAYGKSGKIDEL 839
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L +S + + +N ++ G
Sbjct: 840 FELYKEMSTHECEANTITHNIVISG 864
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ P TY L+ L K L + M G +PN Y ILI+
Sbjct: 885 RDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGM-LDYGCRPNCAIYNILINGFGKAGEAD 943
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
A L + G +PD Y+ ++
Sbjct: 944 AACALFKRMVKEGVRPDLKTYSVLV 968
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD FTY+ ++ CL K L + +M G PNLVT+ I+I +N A
Sbjct: 460 LSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQ-GCTPNLVTFNIMIALHAKARNYETA 518
Query: 66 MRLVSALSDSGFKPDCFVYNTIMK 89
++L + ++GF+PD Y+ +M+
Sbjct: 519 LKLYRDMQNAGFQPDKVTYSIVME 542
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ TYN L+ + L N +QM+ + G +P+ VTY LID L AM
Sbjct: 392 PNTVTYNRLIHSYGRANYLKEAMNVFNQMQEA-GCEPDRVTYCTLIDIHAKAGFLDIAMD 450
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + ++G PD F Y+ I+
Sbjct: 451 MYQRMQEAGLSPDTFTYSVII 471
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D TY +V L + + + +D+M G KPN VTY LI + L+EAM +
Sbjct: 358 DGHTYTTMVGNLGRAKQFGEINKLLDEMVRD-GCKPNTVTYNRLIHSYGRANYLKEAMNV 416
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ + ++G +PD Y T++
Sbjct: 417 FNQMQEAGCEPDRVTYCTLI 436
Score = 36.6 bits (83), Expect = 0.047, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ T+N ++ K R+ T M+ + G +P+ VTY+I+++ + + L EA
Sbjct: 497 PNLVTFNIMIALHAKARNYETALKLYRDMQNA-GFQPDKVTYSIVMEVLGHCGFLEEAEG 555
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + + + PD VY ++
Sbjct: 556 VFAEMQRKNWVPDEPVYGLLV 576
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILI 53
L P++ T N L+ + ++ YN + M A LG+ P+L TYT+L+
Sbjct: 600 LRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLA-LGLHPSLQTYTLLL 646
Score = 32.3 bits (72), Expect = 0.88, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 41 GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
G K + TYT ++ N+ K E +L+ + G KP+ YN ++ Y
Sbjct: 354 GFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSY 404
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P+ +TY L+ CK +L+ + ++M +G++ N+VTYT LID +C+ + ++EA
Sbjct: 398 LVPNEYTYTSLIDANCKIGNLSDAFRLGNEM-LQVGVEWNVVTYTALIDGLCDAERMKEA 456
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L + +G P+ YN ++ G+
Sbjct: 457 EELFGKMDTAGVIPNLASYNALIHGF 482
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD+ TYN L+ C CK L F +M+ + G+KPN+V+Y+ L+D C +++A+
Sbjct: 329 EPDVITYNALINCFCKFGKLPIGLEFYREMKGN-GLKPNVVSYSTLVDAFCKEGMMQQAI 387
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
+ + G P+ + Y +++
Sbjct: 388 KFYVDMRRVGLVPNEYTYTSLI 409
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
++ TY L+ LC + +M + G+ PNL +Y LI KN+ A+ L
Sbjct: 436 NVVTYTALIDGLCDAERMKEAEELFGKMDTA-GVIPNLASYNALIHGFVKAKNMDRALEL 494
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++ L G KPD +Y T + G
Sbjct: 495 LNELKGRGIKPDLLLYGTFIWG 516
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L P++ +Y+ LV CK + F MR +G+ PN TYT LID C NL +A
Sbjct: 363 LKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMR-RVGLVPNEYTYTSLIDANCKIGNLSDA 421
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
RL + + G + + Y ++ G
Sbjct: 422 FRLGNEMLQVGVEWNVVTYTALIDG 446
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ +YN L+ K +++ +++++ GIKP+L+ Y I +C+ + + A
Sbjct: 470 PNLASYNALIHGFVKAKNMDRALELLNELKGR-GIKPDLLLYGTFIWGLCSLEKIEAAKV 528
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ + + G K + +Y T+M Y
Sbjct: 529 VMNEMKECGIKANSLIYTTLMDAY 552
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 39/81 (48%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
+ T+ L+ LCK + ++ ++ +++ G++ N +T +ID +C + A L
Sbjct: 577 VVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLF 636
Query: 70 SALSDSGFKPDCFVYNTIMKG 90
+ G PD Y ++M G
Sbjct: 637 EQMVQKGLVPDRTAYTSLMDG 657
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F+ L PD TYN ++ K L F ++M+ + +P+++TY LI+ C L
Sbjct: 290 FRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMK-DMCCEPDVITYNALINCFCKFGKL 348
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ + +G KP+ Y+T++ +
Sbjct: 349 PIGLEFYREMKGNGLKPNVVSYSTLVDAF 377
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + N L+ K V F M + G +P + TY I+ID +C ++ A
Sbjct: 225 PKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGA-GARPTVFTYNIMIDCMCKEGDVEAARG 283
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + G PD YN+++ G+
Sbjct: 284 LFEEMKFRGLVPDTVTYNSMIDGF 307
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q IFT ++ LCK + +QM G+ P+ YT L+D N+ E
Sbjct: 610 QANAAIFTA--MIDGLCKDNQVEAATTLFEQM-VQKGLVPDRTAYTSLMDGNFKQGNVLE 666
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L +++ G K D Y +++ G
Sbjct: 667 ALALRDKMAEIGMKLDLLAYTSLVWG 692
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ Y + LC + +++M+ GIK N + YT L+D + N
Sbjct: 501 RGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMK-ECGIKANSLIYTTLMDAYFKSGNPT 559
Query: 64 EAMRLVSALSD 74
E + L+ + +
Sbjct: 560 EGLHLLDEMKE 570
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L PD Y L+ K ++ D+M A +G+K +L+ YT L+ + +
Sbjct: 639 MVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKM-AEIGMKLDLLAYTSLVWGLSHCN 697
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L++A + + G PD + +++K +
Sbjct: 698 QLQKARSFLEEMIGEGIHPDEVLCISVLKKH 728
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72
Y L+ K + T + +D+M+ L I+ +VT+ +LID +C K + +A+ + +
Sbjct: 545 YTTLMDAYFKSGNPTEGLHLLDEMK-ELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRI 603
Query: 73 S-DSGFKPDCFVYNTIMKG 90
S D G + + ++ ++ G
Sbjct: 604 SNDFGLQANAAIFTAMIDG 622
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + P+ TYN ++ LC L D M AS G PN+VTY LI C +
Sbjct: 272 MIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLM-ASKGCFPNVVTYNTLISGFCKFR 330
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E M+L +S GF D F YNT++ GY
Sbjct: 331 MVDEGMKLFQRMSCEGFNADIFTYNTLIHGY 361
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ D++++ L+ C C+C L+ + + +M LG +P++VT+ L+ C + +A
Sbjct: 102 ISHDLYSFTILIHCFCRCSRLSFALSVLGKM-MKLGYEPSIVTFGSLLHGFCLVNRIGDA 160
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
LV + SG++P+ VYNT++ G
Sbjct: 161 FSLVILMVKSGYEPNVVVYNTLIDG 185
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P I T+ L+ C + ++ V M S G +PN+V Y LID +C L A+
Sbjct: 138 EPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKS-GYEPNVVVYNTLIDGLCKNGELNIAL 196
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L++ + G D YNT++ G
Sbjct: 197 ELLNEMEKKGLGADVVTYNTLLTG 220
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFV-DQMRASLGIKPNLVTYTILIDNVCNTKNL 62
K L D+ TYN L+ LC + + D M+ S I P++VT+T LID NL
Sbjct: 205 KGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRS--INPDVVTFTALIDVFVKQGNL 262
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA L + S P+ YN+I+ G
Sbjct: 263 DEAQELYKEMIQSSVDPNNVTYNSIING 290
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRAS---LGIKPNLVTYTILIDNVC 57
++ +++ PDI T+ L+ LC + + D MR S +GI V Y I+I +C
Sbjct: 377 MVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGI----VAYNIMIHGLC 432
Query: 58 NTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A L L G KPD Y ++ G
Sbjct: 433 KADKVEKAWELFCRLPVEGVKPDARTYTIMILG 465
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
I YN ++ LCK + + ++ G+KP+ TYTI+I +C REA L+
Sbjct: 421 IVAYNIMIHGLCKADKVEKAWELFCRLPVE-GVKPDARTYTIMILGLCKNGPRREADELI 479
Query: 70 SALSDSG 76
+ + G
Sbjct: 480 RRMKEEG 486
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ Q P I + L+ R TV F +M GI +L ++TILI C
Sbjct: 62 MVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMEL-YGISHDLYSFTILIHCFCRCS 120
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L A+ ++ + G++P + +++ G+
Sbjct: 121 RLSFALSVLGKMMKLGYEPSIVTFGSLLHGF 151
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ TYN L+ CK R + +M G ++ TY LI C LR A+
Sbjct: 314 PNVVTYNTLISGFCKFRMVDEGMKLFQRMSCE-GFNADIFTYNTLIHGYCQVGKLRVALD 372
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
+ + PD + ++ G
Sbjct: 373 IFCWMVSRRVTPDIITHCILLHG 395
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD+ TY +V LCK + + + +M I+P +V Y +ID +CN K
Sbjct: 212 MVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQG-KIEPGVVIYNTIIDALCNYK 270
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
N+ +A+ L + + + G +P+ YN++++
Sbjct: 271 NVNDALNLFTEMDNKGIRPNVVTYNSLIR 299
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ PDI+TYN +++ +CK + ++ + G+KPN+VTYT ++ C E
Sbjct: 496 KMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK-GVKPNVVTYTTMMSGFCRKGLKEE 554
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A L + + G PD YNT+++ +
Sbjct: 555 ADALFREMKEEGPLPDSGTYNTLIRAH 581
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ +++TY+ L+ C C+ L+ + +M LG +P++VT L++ C+ + +A
Sbjct: 112 ISHNLYTYSILINCFCRRSQLSLALAVLAKM-MKLGYEPDIVTLNSLLNGFCHGNRISDA 170
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ LV + + G++PD F +NT++ G
Sbjct: 171 VSLVGQMVEMGYQPDSFTFNTLIHG 195
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 12/99 (12%)
Query: 1 LIFKQLP-----PDIFTYNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTIL 52
++FKQ+ PDI TY+ L+ LC K + V+ ++ + + ++P++ TY I+
Sbjct: 452 IVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSK----MEPDIYTYNIM 507
Query: 53 IDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
I+ +C + + L +LS G KP+ Y T+M G+
Sbjct: 508 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGF 546
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TYN L++CLC + + M I PN+VT++ LID L
Sbjct: 285 KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM-IERKINPNVVTFSALIDAFVKEGKLV 343
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L + PD F Y++++ G+
Sbjct: 344 EAEKLYDEMIKRSIDPDIFTYSSLINGF 371
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PDIFTY+ L+ C L + + M S PN+VTY LI C K
Sbjct: 352 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM-ISKDCFPNVVTYNTLIKGFCKAK 410
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E M L +S G + Y T++ G+
Sbjct: 411 RVDEGMELFREMSQRGLVGNTVTYTTLIHGF 441
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD FT+N L+ L + + VD+M G +P+LVTY I+++ +C ++ A+
Sbjct: 184 PDSFTFNTLIHGLFRHNRASEAVALVDRMVVK-GCQPDLVTYGIVVNGLCKRGDIDLALS 242
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L+ + +P +YNTI+
Sbjct: 243 LLKKMEQGKIEPGVVIYNTII 263
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 34/124 (27%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSL-----------------------TTVYNF----- 32
+I K P++ TYN L+K CK + + T ++ F
Sbjct: 387 MISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARE 446
Query: 33 ------VDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNT 86
V + S G+ P+++TY+IL+D +CN + A+ + L S +PD + YN
Sbjct: 447 CDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNI 506
Query: 87 IMKG 90
+++G
Sbjct: 507 MIEG 510
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I ++ L+ + K V + +QM+ +LGI NL TY+ILI+ C L A+
Sbjct: 79 PSIVEFSKLLSAIAKMNKFDLVISLGEQMQ-NLGISHNLYTYSILINCFCRRSQLSLALA 137
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+++ + G++PD N+++ G+
Sbjct: 138 VLAKMMKLGYEPDIVTLNSLLNGF 161
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +++ P++ T++ L+ K L D+M I P++ TY+ LI+ C
Sbjct: 317 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM-IKRSIDPDIFTYSSLINGFCMHD 375
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA + + P+ YNT++KG+
Sbjct: 376 RLDEAKHMFELMISKDCFPNVVTYNTLIKGF 406
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+L P + YN ++ LCK + + N +M GI+PN+VTY+ LI +CN +
Sbjct: 251 KLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETK-GIRPNVVTYSSLISCLCNYGRWSD 309
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A RL+S + + PD F ++ ++ +
Sbjct: 310 ASRLLSDMIERKINPDVFTFSALIDAF 336
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IFK++ PP+I TYN L+ LCK L + ++ S ++P + TY I+I+ +
Sbjct: 453 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS-KMEPTIYTYNIMIEGM 511
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C + + L LS G KPD YNT++ G+
Sbjct: 512 CKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGF 546
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+P + +TY+ L+ C C+ L + +M LG +PN+VT + L++ C++K + EA
Sbjct: 112 IPHNHYTYSILINCFCRRSQLPLALAVLGKM-MKLGYEPNIVTLSSLLNGYCHSKRISEA 170
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ LV + +G++P+ +NT++ G
Sbjct: 171 VALVDQMFVTGYQPNTVTFNTLIHG 195
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +++ PD+FT++ L+ K L D+M I P++VTY+ LI+ C
Sbjct: 317 MIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEM-VKRSIDPSIVTYSSLINGFCMHD 375
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA ++ + PD YNT++KG+
Sbjct: 376 RLDEAKQMFEFMVSKHCFPDVVTYNTLIKGF 406
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD+ TY +V LCK +N +++M ++P ++ Y +ID +C K
Sbjct: 212 MVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQG-KLEPGVLIYNTIIDGLCKYK 270
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIM 88
++ +A+ L + G +P+ Y++++
Sbjct: 271 HMDDALNLFKEMETKGIRPNVVTYSSLI 298
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P I+TYN +++ +CK + ++ + G+KP++V Y +I C + E
Sbjct: 496 KMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLK-GVKPDVVAYNTMISGFCRKGSKEE 554
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A L + + G P+ YNT+++
Sbjct: 555 ADALFKEMKEDGTLPNSGCYNTLIRA 580
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L + TYN L++ L + +M S G+ PN++TY L+D +C L
Sbjct: 425 RGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEM-VSDGVPPNIMTYNTLLDGLCKNGKLE 483
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+AM + L S +P + YN +++G
Sbjct: 484 KAMVVFEYLQRSKMEPTIYTYNIMIEG 510
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P+ T+N L+ L + +D+M A G +P+LVTY ++++ +C + A
Sbjct: 184 PNTVTFNTLIHGLFLHNKASEAMALIDRMVAK-GCQPDLVTYGVVVNGLCKRGDTDLAFN 242
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L++ + +P +YNTI+ G
Sbjct: 243 LLNKMEQGKLEPGVLIYNTIIDG 265
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P+I T + L+ C + ++ VDQM + G +PN VT+ LI + EAM
Sbjct: 148 EPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT-GYQPNTVTFNTLIHGLFLHNKASEAM 206
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L+ + G +PD Y ++ G
Sbjct: 207 ALIDRMVAKGCQPDLVTYGVVVNG 230
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I ++ L+ + K V + +QM+ +LGI N TY+ILI+ C L A+
Sbjct: 79 PSIIEFSKLLSAIAKMNKFDVVISLGEQMQ-NLGIPHNHYTYSILINCFCRRSQLPLALA 137
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + G++P+ ++++ GY
Sbjct: 138 VLGKMMKLGYEPNIVTLSSLLNGY 161
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TY+ L+ CLC + + M I P++ T++ LID L
Sbjct: 285 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDM-IERKINPDVFTFSALIDAFVKEGKLV 343
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L + P Y++++ G+
Sbjct: 344 EAEKLYDEMVKRSIDPSIVTYSSLINGF 371
>sp|Q9M8W9|PP211_ARATH Pentatricopeptide repeat-containing protein At3g04130,
mitochondrial OS=Arabidopsis thaliana GN=At3g04130 PE=2
SV=2
Length = 508
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P + +Y +++C C+ VY + +M A+ G PN +TYT ++ ++ K EA+R
Sbjct: 257 PCVISYTTIIRCYCQQFEFIKVYEMLSEMEAN-GSPPNSITYTTIMSSLNAQKEFEEALR 315
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+ + + SG KPD YN ++
Sbjct: 316 VATRMKRSGCKPDSLFYNCLI 336
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
+ N L+ LCK + + + Q+++ I PN T+ I I C + EA+ +
Sbjct: 192 SMNLLLDTLCKEKRVEQARVVLLQLKSH--ITPNAHTFNIFIHGWCKANRVEEALWTIQE 249
Query: 72 LSDSGFKPDCFVYNTIMKGY 91
+ GF+P Y TI++ Y
Sbjct: 250 MKGHGFRPCVISYTTIIRCY 269
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ P+ T+N + CK + + +M+ G +P +++YT +I C +
Sbjct: 219 HITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGH-GFRPCVISYTTIIRCYCQQFEFIK 277
Query: 65 AMRLVSALSDSGFKPDCFVYNTIM 88
++S + +G P+ Y TIM
Sbjct: 278 VYEMLSEMEANGSPPNSITYTTIM 301
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD YN L+ L + L LG+ N TY +I C+ +A+
Sbjct: 327 PDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIE 386
Query: 68 LVSALSDSGF-KPDCFVYNTIMK 89
L+ + S PD Y +++
Sbjct: 387 LLKEMESSNLCNPDVHTYQPLLR 409
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 1 LIFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDN 55
++FKQ+ P+I TYN L+ LCK L + ++ S ++P + TY I+I+
Sbjct: 456 MVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS-KMEPTIYTYNIMIEG 514
Query: 56 VCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+C + + L +LS G KPD +YNT++ G+
Sbjct: 515 MCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGF 550
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ +++TYN L+ C C+ ++ + +M LG +P++VT + L++ C+ K + +A
Sbjct: 116 ISHNLYTYNILINCFCRRSQISLALALLGKM-MKLGYEPSIVTLSSLLNGYCHGKRISDA 174
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ LV + + G++PD + T++ G
Sbjct: 175 VALVDQMVEMGYRPDTITFTTLIHG 199
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PDIFTY+ L+ C L + + M S PN+VTY LI+ C K
Sbjct: 356 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM-ISKDCFPNVVTYNTLINGFCKAK 414
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ E + L +S G + Y T++ G+
Sbjct: 415 RIDEGVELFREMSQRGLVGNTVTYTTLIHGF 445
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TY+ L+ CLC + + M I PN+VT+ LID L
Sbjct: 289 KGVRPNVITYSSLISCLCNYERWSDASRLLSDM-IERKINPNVVTFNALIDAFVKEGKLV 347
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L + PD F Y++++ G+
Sbjct: 348 EAEKLYDEMIKRSIDPDIFTYSSLINGF 375
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ ++ Y+ ++ LCK R N +M G++PN++TY+ LI +CN + +
Sbjct: 255 KIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENK-GVRPNVITYSSLISCLCNYERWSD 313
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A RL+S + + P+ +N ++ +
Sbjct: 314 ASRLLSDMIERKINPNVVTFNALIDAF 340
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P IF +N L+ + K + V + ++M+ LGI NL TY ILI+ C + A+
Sbjct: 83 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQ-RLGISHNLYTYNILINCFCRRSQISLALA 141
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + G++P ++++ GY
Sbjct: 142 LLGKMMKLGYEPSIVTLSSLLNGY 165
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ TYN L+ CK + + +M + G+ N VTYT LI +
Sbjct: 391 MISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREM-SQRGLVGNTVTYTTLIHGFFQAR 449
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A + + G P+ YNT++ G
Sbjct: 450 DCDNAQMVFKQMVSDGVHPNIMTYNTLLDG 479
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +++ P++ T+N L+ K L D+M I P++ TY+ LI+ C
Sbjct: 321 MIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEM-IKRSIDPDIFTYSSLINGFCMHD 379
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA + + P+ YNT++ G+
Sbjct: 380 RLDEAKHMFELMISKDCFPNVVTYNTLINGF 410
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ P I+TYN +++ +CK + ++ + G+KP+++ Y +I C E
Sbjct: 500 KMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK-GVKPDVIIYNTMISGFCRKGLKEE 558
Query: 65 AMRLVSALSDSGFKPD 80
A L + + G PD
Sbjct: 559 ADALFRKMREDGPLPD 574
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD T+ L+ L + VD+M G +PNLVTY ++++ +C ++ A
Sbjct: 188 PDTITFTTLIHGLFLHNKASEAVALVDRM-VQRGCQPNLVTYGVVVNGLCKRGDIDLAFN 246
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
L++ + + + + +Y+T++
Sbjct: 247 LLNKMEAAKIEANVVIYSTVI 267
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + PD+FTY +V LCK + + + +M I+ ++V YT +ID +CN K
Sbjct: 211 MVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKG-KIEADVVIYTTIIDALCNYK 269
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
N+ +A+ L + + + G +P+ YN++++
Sbjct: 270 NVNDALNLFTEMDNKGIRPNVVTYNSLIR 298
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 2 IFKQL-----PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56
IFK++ PPDI TY+ L+ LCK L + ++ S ++P++ TY I+I+ +
Sbjct: 452 IFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS-KMEPDIYTYNIMIEGM 510
Query: 57 CNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C + + L +LS G KP+ +Y T++ G+
Sbjct: 511 CKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGF 545
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + PDIFTY+ L+ C L + + M S PN+VTY LI C K
Sbjct: 351 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM-ISKDCFPNVVTYNTLIKGFCKAK 409
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ E M L +S G + YNT+++G
Sbjct: 410 RVEEGMELFREMSQRGLVGNTVTYNTLIQG 439
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ PDI+TYN +++ +CK + ++ + G+KPN++ YT +I C E
Sbjct: 495 KMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK-GVKPNVIIYTTMISGFCRKGLKEE 553
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A L + + G P+ YNT+++
Sbjct: 554 ADALFREMKEDGTLPNSGTYNTLIRA 579
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ TYN L++CLC + + M I PN+VT++ LID L
Sbjct: 284 KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM-IERKINPNVVTFSALIDAFVKEGKLV 342
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA +L + PD F Y++++ G+
Sbjct: 343 EAEKLYDEMIKRSIDPDIFTYSSLINGF 370
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+++YN L+ C C+ L + +M LG +P++VT + L++ C+ K + EA+ L
Sbjct: 114 DLYSYNILINCFCRRSQLPLALAVLGKM-MKLGYEPDIVTLSSLLNGYCHGKRISEAVAL 172
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
V + ++P+ +NT++ G
Sbjct: 173 VDQMFVMEYQPNTVTFNTLIHG 194
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L + TYN L++ L + +M S G+ P+++TY+IL+D +C L
Sbjct: 424 RGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKM-VSDGVPPDIITYSILLDGLCKYGKLE 482
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A+ + L S +PD + YN +++G
Sbjct: 483 KALVVFEYLQKSKMEPDIYTYNIMIEG 509
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PDI T + L+ C + ++ VDQM + +PN VT+ LI + EA+
Sbjct: 147 EPDIVTLSSLLNGYCHGKRISEAVALVDQMFV-MEYQPNTVTFNTLIHGLFLHNKASEAV 205
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L+ + G +PD F Y T++ G
Sbjct: 206 ALIDRMVARGCQPDLFTYGTVVNG 229
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I +++ P++ T++ L+ K L D+M I P++ TY+ LI+ C
Sbjct: 316 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM-IKRSIDPDIFTYSSLINGFCMHD 374
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA + + P+ YNT++KG+
Sbjct: 375 RLDEAKHMFELMISKDCFPNVVTYNTLIKGF 405
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ TYN L+K CK + + +M + G+ N VTY LI +
Sbjct: 386 MISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM-SQRGLVGNTVTYNTLIQGLFQAG 444
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ A ++ + G PD Y+ ++ G
Sbjct: 445 DCDMAQKIFKKMVSDGVPPDIITYSILLDG 474
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I +N L+ + K V + ++M+ +L I +L +Y ILI+ C L A+
Sbjct: 78 PSIVEFNKLLSAIAKMNKFDLVISLGERMQ-NLRISYDLYSYNILINCFCRRSQLPLALA 136
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
++ + G++PD ++++ GY
Sbjct: 137 VLGKMMKLGYEPDIVTLSSLLNGY 160
>sp|Q9SHK2|PPR17_ARATH Pentatricopeptide repeat-containing protein At1g06580
OS=Arabidopsis thaliana GN=At1g06580 PE=2 SV=1
Length = 500
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ D++++ L+ C C+C L+ + + +M LG +P++VT+ L++ C+ EA
Sbjct: 110 ISHDLYSFTTLIDCFCRCARLSLALSCLGKM-MKLGFEPSIVTFGSLVNGFCHVNRFYEA 168
Query: 66 MRLVSALSDSGFKPDCFVYNTIM 88
M LV + G++P+ +YNTI+
Sbjct: 169 MSLVDQIVGLGYEPNVVIYNTII 191
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 13/97 (13%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMR------ASLGIKPNLVTYTILID 54
+I + + P+I TYN L+ LC ++ +D+ + S G PN VTY LI+
Sbjct: 280 MIQRSVNPNIVTYNSLINGLC-------IHGLLDEAKKVLNVLVSKGFFPNAVTYNTLIN 332
Query: 55 NVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C K + + M+++ +S G D F YNT+ +GY
Sbjct: 333 GYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGY 369
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P I T+ LV C + VDQ+ LG +PN+V Y +ID++C + A+
Sbjct: 146 EPSIVTFGSLVNGFCHVNRFYEAMSLVDQI-VGLGYEPNVVIYNTIIDSLCEKGQVNTAL 204
Query: 67 RLVSALSDSGFKPDCFVYNTIM 88
++ + G +PD YN+++
Sbjct: 205 DVLKHMKKMGIRPDVVTYNSLI 226
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P++ YN ++ LC+ + T + + M+ +GI+P++VTY LI + ++ +
Sbjct: 181 EPNVVIYNTIIDSLCEKGQVNTALDVLKHMK-KMGIRPDVVTYNSLITRLFHSGTWGVSA 239
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
R++S + G PD ++ ++ Y
Sbjct: 240 RILSDMMRMGISPDVITFSALIDVY 264
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D FTYN L + C+ + + +M S G+ P++ T+ IL+D +C+ + +A+
Sbjct: 358 DTFTYNTLYQGYCQAGKFSAAEKVLGRM-VSCGVHPDMYTFNILLDGLCDHGKIGKALVR 416
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ L S YN I+KG
Sbjct: 417 LEDLQKSKTVVGIITYNIIIKG 438
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD++T+N L+ LC + ++ ++ S + ++TY I+I +C + +A
Sbjct: 390 VHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTV-VGIITYNIIIKGLCKADKVEDA 448
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
L +L+ G PD Y T+M G
Sbjct: 449 WYLFCSLALKGVSPDVITYITMMIG 473
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFV-DQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ PD+ TYN L+ L + + D MR +GI P+++T++ LID L E
Sbjct: 215 IRPDVVTYNSLITRLFHSGTWGVSARILSDMMR--MGISPDVITFSALIDVYGKEGQLLE 272
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A + + + P+ YN+++ G
Sbjct: 273 AKKQYNEMIQRSVNPNIVTYNSLING 298
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
L+ K P+ TYN L+ CK + + + M G+ + TY L C
Sbjct: 315 LVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRD-GVDGDTFTYNTLYQGYCQAG 373
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
A +++ + G PD + +N ++ G
Sbjct: 374 KFSAAEKVLGRMVSCGVHPDMYTFNILLDG 403
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I ++ L+ + K V + + LGI +L ++T LID C L A+
Sbjct: 77 PSIVDFSRLLIAIAKLNKYEAVISLFRHLEM-LGISHDLYSFTTLIDCFCRCARLSLALS 135
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + GF+P + +++ G+
Sbjct: 136 CLGKMMKLGFEPSIVTFGSLVNGF 159
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLV 69
I TYN ++K LCK + + + A G+ P+++TY ++ + + REA L
Sbjct: 429 IITYNIIIKGLCKADKVEDAWYLFCSL-ALKGVSPDVITYITMMIGLRRKRLWREAHELY 487
Query: 70 SALS-DSGFKP 79
+ + G P
Sbjct: 488 RKMQKEDGLMP 498
>sp|O81908|PPR2_ARATH Pentatricopeptide repeat-containing protein At1g02060,
chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2
SV=2
Length = 710
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD+ TYN ++ LC+ + +N + M + + + PN+V+YT L+ C + + EA+
Sbjct: 242 PDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAV 301
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
+ + G KP+ YNT++KG
Sbjct: 302 LVFHDMLSRGLKPNAVTYNTLIKG 325
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 41/85 (48%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P + T+N L+ L K ++ D+MR + G+ P+ T+ LI+ C + EA
Sbjct: 169 ISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEA 228
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
R+ + PD YNTI+ G
Sbjct: 229 FRIFKDMELYHCNPDVVTYNTIIDG 253
Score = 35.8 bits (81), Expect = 0.083, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYN-FVDQMRASLGIKPNLVTYTILIDNVCNT 59
++ + L P+ TYN L+K L + + + + A P+ T+ ILI C+
Sbjct: 307 MLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDA 366
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+L AM++ + + PD Y+ +++
Sbjct: 367 GHLDAAMKVFQEMLNMKLHPDSASYSVLIR 396
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+P ++ T N L+ C C+C L+ +F+ +M LG +P++VT+ L++ C + +A
Sbjct: 112 IPHNLCTCNILLNCFCRCSQLSLALSFLGKM-IKLGHEPSIVTFGSLLNGFCRGDRVYDA 170
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ + + G+KP+ +YNTI+ G
Sbjct: 171 LYMFDQMVGMGYKPNVVIYNTIIDG 195
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
P I T+ L+ C+ + DQM +G KPN+V Y +ID +C +K + A+
Sbjct: 148 EPSIVTFGSLLNGFCRGDRVYDALYMFDQM-VGMGYKPNVVIYNTIIDGLCKSKQVDNAL 206
Query: 67 RLVSALSDSGFKPDCFVYNTIMKG 90
L++ + G PD YN+++ G
Sbjct: 207 DLLNRMEKDGIGPDVVTYNSLISG 230
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P++ YN ++ LCK + + + +++M GI P++VTY LI +C++ +A R
Sbjct: 184 PNVVIYNTIIDGLCKSKQVDNALDLLNRMEKD-GIGPDVVTYNSLISGLCSSGRWSDATR 242
Query: 68 LVSALSDSGFKPDCFVYNTIM 88
+VS ++ PD F +N ++
Sbjct: 243 MVSCMTKREIYPDVFTFNALI 263
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + L PDI TY+ L+ LC L M S G P++VTY+ILI+ C +K
Sbjct: 282 MIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFM-VSKGCFPDVVTYSILINGYCKSK 340
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ M+L +S G + Y +++GY
Sbjct: 341 KVEHGMKLFCEMSQRGVVRNTVTYTILIQGY 371
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQM-RASLGIKPNLVTYTILIDNVCNTKNL 62
+++ PD+FT+N L+ K ++ F ++M R SL P++VTY++LI +C L
Sbjct: 250 REIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSL--DPDIVTYSLLIYGLCMYSRL 307
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA + + G PD Y+ ++ GY
Sbjct: 308 DEAEEMFGFMVSKGCFPDVVTYSILINGY 336
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++F + P+I TYN L+ LC + + M+ + G+ ++VTY I+I +C
Sbjct: 387 MVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKN-GMDADIVTYNIIIRGMCKAG 445
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ +A + +L+ G PD + Y T+M G
Sbjct: 446 EVADAWDIYCSLNCQGLMPDIWTYTTMMLG 475
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TY L++ C+ L +M G+ PN++TY +L+ +C+ + +A+ +++
Sbjct: 363 TYTILIQGYCRAGKLNVAEEIFRRM-VFCGVHPNIITYNVLLHGLCDNGKIEKALVILAD 421
Query: 72 LSDSGFKPDCFVYNTIMKG 90
+ +G D YN I++G
Sbjct: 422 MQKNGMDADIVTYNIIIRG 440
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K PD+ TY+ L+ CK + + +M + G+ N VTYTILI C
Sbjct: 317 MVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEM-SQRGVVRNTVTYTILIQGYCRAG 375
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
L A + + G P+ YN ++ G
Sbjct: 376 KLNVAEEIFRRMVFCGVHPNIITYNVLLHG 405
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ DI TYN +++ +CK + ++ + G+ P++ TYT ++ + REA
Sbjct: 427 MDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQ-GLMPDIWTYTTMMLGLYKKGLRREA 485
Query: 66 MRLVSALSDSGFKP-DCFV 83
L + + G P +C+V
Sbjct: 486 DALFRKMKEDGILPNECYV 504
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
PDI T+ L+ C + + V+QM +GIKP++V YT +ID++C ++ A
Sbjct: 138 FEPDIVTFTSLINGFCLGNRMEEAMSMVNQM-VEMGIKPDVVMYTTIIDSLCKNGHVNYA 196
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + + G +PD +Y +++ G
Sbjct: 197 LSLFDQMENYGIRPDVVMYTSLVNG 221
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D++T N L+ C C+ +F+ +M LG +P++VT+T LI+ C + EAM +
Sbjct: 106 DLYTCNLLMNCFCQSSQPYLASSFLGKM-MKLGFEPDIVTFTSLINGFCLGNRMEEAMSM 164
Query: 69 VSALSDSGFKPDCFVYNTIM 88
V+ + + G KPD +Y TI+
Sbjct: 165 VNQMVEMGIKPDVVMYTTII 184
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ Y ++ LCK + + DQM + GI+P++V YT L++ +CN+ R+A
Sbjct: 173 IKPDVVMYTTIIDSLCKNGHVNYALSLFDQME-NYGIRPDVVMYTSLVNGLCNSGRWRDA 231
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
L+ ++ KPD +N ++ +
Sbjct: 232 DSLLRGMTKRKIKPDVITFNALIDAF 257
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 13/97 (13%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMR------ASLGIKPNLVTYTILID 54
+I + P+IFTY L+ C + VD+ R + G P++V YT LI+
Sbjct: 273 MIRMSIAPNIFTYTSLINGFC-------MEGCVDEARQMFYLMETKGCFPDVVAYTSLIN 325
Query: 55 NVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
C K + +AM++ +S G + Y T+++G+
Sbjct: 326 GFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGF 362
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++ PD+ T+N L+ K ++M + I PN+ TYT LI+ C +
Sbjct: 241 RKIKPDVITFNALIDAFVKEGKFLDAEELYNEM-IRMSIAPNIFTYTSLINGFCMEGCVD 299
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA ++ + G PD Y +++ G+
Sbjct: 300 EARQMFYLMETKGCFPDVVAYTSLINGF 327
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 1 LIFKQLPPDIFTYNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVC 57
++ + +PP+I TYN L+ CLC K + ++ + Q R G+ PN+ TY +L+ +C
Sbjct: 378 MVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDM-QKREMDGVAPNIWTYNVLLHGLC 436
Query: 58 NTKNLREAM 66
L +A+
Sbjct: 437 YNGKLEKAL 445
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y L+ CKC+ + +M + G+ N +TYT LI A
Sbjct: 315 PDVVAYTSLINGFCKCKKVDDAMKIFYEM-SQKGLTGNTITYTTLIQGFGQVGKPNVAQE 373
Query: 68 LVSALSDSGFKPDCFVYNTIMK 89
+ S + G P+ YN ++
Sbjct: 374 VFSHMVSRGVPPNIRTYNVLLH 395
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD+ Y LV LC + + M IKP+++T+ LID +A
Sbjct: 210 PDVVMYTSLVNGLCNSGRWRDADSLLRGM-TKRKIKPDVITFNALIDAFVKEGKFLDAEE 268
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L + + P+ F Y +++ G+
Sbjct: 269 LYNEMIRMSIAPNIFTYTSLINGF 292
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
P I + L+ + K + V N D ++ +G+ +L T +L++ C + A
Sbjct: 70 PSIIDFTKLLNVIAKMKKFDVVINLCDHLQI-MGVSHDLYTCNLLMNCFCQSSQPYLASS 128
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
+ + GF+PD + +++ G+
Sbjct: 129 FLGKMMKLGFEPDIVTFTSLINGF 152
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 36/105 (34%), Gaps = 34/105 (32%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRA--------------------------- 38
+ P+I+TYN L+ LC L + MR
Sbjct: 421 VAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAV 480
Query: 39 -------SLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSG 76
S G+KPN+VTYT +I + EA L + + G
Sbjct: 481 NLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDG 525
>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560,
mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2
SV=1
Length = 660
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
Q+PP F+ ++ LCK L Y + M G KPN+ YT+LID + ++ +
Sbjct: 324 QVPPHAFS--LVIGGLCKEGKLNEGYTVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVED 380
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A+RL+ + D GFKPD Y+ ++ G
Sbjct: 381 AIRLLHRMIDEGFKPDVVTYSVVVNG 406
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD+ TY+ +V LCK + ++ R G+ N + Y+ LID +
Sbjct: 388 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFD-GLAINSMFYSSLIDGLGKAG 446
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA RL +S+ G D + YN ++ +
Sbjct: 447 RVDEAERLFEEMSEKGCTRDSYCYNALIDAF 477
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ P ++TYNFL+ L + + + M + IKP++VTY +I C ++A
Sbjct: 218 IEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGR-IKPDIVTYNTMIKGYCKAGQTQKA 276
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
M + + G + D Y T+++
Sbjct: 277 MEKLRDMETRGHEADKITYMTMIQA 301
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ P + N L+K K + + +M+ + GI+P L TY L++ + + +
Sbjct: 182 EFPMTVSAANALIKSFGKLGMVEELLWVWRKMKEN-GIEPTLYTYNFLMNGLVSAMFVDS 240
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
A R+ + KPD YNT++KGY
Sbjct: 241 AERVFEVMESGRIKPDIVTYNTMIKGY 267
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K P++ Y L+ K S+ + +M G KP++VTY+++++ +C
Sbjct: 353 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNG 411
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA+ G + Y++++ G
Sbjct: 412 RVEEALDYFHTCRFDGLAINSMFYSSLIDG 441
Score = 36.2 bits (82), Expect = 0.069, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 32/82 (39%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D + YN L+ K R + +M G + TYTIL+ + EA++L
Sbjct: 466 DSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKL 525
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ D G P + + G
Sbjct: 526 WDMMIDKGITPTAACFRALSTG 547
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 34/121 (28%)
Query: 5 QLPPDIFTYNFLVKCLCKC----------RSLTTVYNFVD-------------------- 34
++ PDI TYN ++K CK R + T + D
Sbjct: 252 RIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSC 311
Query: 35 ----QMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
Q GI+ ++++I +C L E + + G KP+ +Y ++ G
Sbjct: 312 VALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDG 371
Query: 91 Y 91
Y
Sbjct: 372 Y 372
>sp|Q8VZE4|PP299_ARATH Pentatricopeptide repeat-containing protein At4g01570
OS=Arabidopsis thaliana GN=At4g01570 PE=2 SV=1
Length = 805
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 7/86 (8%)
Query: 8 PDIFTYNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
PDI TYN L+ LC K + V+ D+++ S G +P+ TY ILI C + + +
Sbjct: 287 PDICTYNSLIHVLCLFGKAKDALIVW---DELKVS-GHEPDNSTYRILIQGCCKSYRMDD 342
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
AMR+ + +GF PD VYN ++ G
Sbjct: 343 AMRIYGEMQYNGFVPDTIVYNCLLDG 368
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI YN L+ L K L D M+++ GI P++V+Y +I+ L+EA +
Sbjct: 699 DIVMYNTLINALGKATRLDEATQLFDHMKSN-GINPDVVSYNTMIEVNSKAGKLKEAYKY 757
Query: 69 VSALSDSGFKPDCFVYNTIM 88
+ A+ D+G P+ V +TI+
Sbjct: 758 LKAMLDAGCLPN-HVTDTIL 776
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TY L++ CK + +M+ + G P+ + Y L+D + + EA +
Sbjct: 322 PDNSTYRILIQGCCKSYRMDDAMRIYGEMQYN-GFVPDTIVYNCLLDGTLKARKVTEACQ 380
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L + G + C+ YN ++ G
Sbjct: 381 LFEKMVQEGVRASCWTYNILIDG 403
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
DI TYN +++ L K +D++ G ++V Y LI+ + L EA +L
Sbjct: 664 DIATYNVIIQGLGKMGRADLASAVLDRLTKQGGYL-DIVMYNTLINALGKATRLDEATQL 722
Query: 69 VSALSDSGFKPDCFVYNTIMK 89
+ +G PD YNT+++
Sbjct: 723 FDHMKSNGINPDVVSYNTMIE 743
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD YN L+ K R +T ++M G++ + TY ILID +
Sbjct: 357 PDTIVYNCLLDGTLKARKVTEACQLFEKM-VQEGVRASCWTYNILIDGLFRNGRAEAGFT 415
Query: 68 LVSALSDSGFKPDCFVYNTI 87
L L G D ++ +
Sbjct: 416 LFCDLKKKGQFVDAITFSIV 435
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTIL 52
PD+ +YN +++ K L Y ++ M + G PN VT TIL
Sbjct: 733 PDVVSYNTMIEVNSKAGKLKEAYKYLKAMLDA-GCLPNHVTDTIL 776
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + + P++FTYN ++ LC+ L V + G KP+++TY LI +C
Sbjct: 242 VIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCL-IEQGPKPDVITYNNLIYGLCKNS 300
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+EA + + + G +PD + YNT++ GY
Sbjct: 301 KFQEAEVYLGKMVNEGLEPDSYTYNTLIAGY 331
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD++TYN L+ LCK V M G PNL T+ IL++++C + L EA+
Sbjct: 494 PDVYTYNSLLNGLCKTSKFEDVMETYKTM-VEKGCAPNLFTFNILLESLCRYRKLDEALG 552
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ + + PD + T++ G+
Sbjct: 553 LLEEMKNKSVNPDAVTFGTLIDGF 576
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
T+N L++ LCK + +D++ G+ PNL TY + I +C L A+R+V
Sbjct: 218 TFNKLLRVLCKKGDVKECEKLLDKV-IKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGC 276
Query: 72 LSDSGFKPDCFVYNTIMKG 90
L + G KPD YN ++ G
Sbjct: 277 LIEQGPKPDVITYNNLIYG 295
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P++ T+N LV LCK ++ V M S G P++ T+ ILI +
Sbjct: 420 KGLIPEVQTFNILVNGLCKMGCVSDADGLVKVM-ISKGYFPDIFTFNILIHGYSTQLKME 478
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ ++ + D+G PD + YN+++ G
Sbjct: 479 NALEILDVMLDNGVDPDVYTYNSLLNG 505
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L PD +TYN L+ CK + V + G P+ TY LID +C+
Sbjct: 312 MVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFN-GFVPDQFTYRSLIDGLCHEG 370
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
A+ L + G KP+ +YNT++KG
Sbjct: 371 ETNRALALFNEALGKGIKPNVILYNTLIKG 400
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 2 IFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61
+F PD FTY L+ LC ++ GIKPN++ Y LI + N
Sbjct: 348 VFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGK-GIKPNVILYNTLIKGLSNQGM 406
Query: 62 LREAMRLVSALSDSGFKPDCFVYNTIMKG 90
+ EA +L + +S+ G P+ +N ++ G
Sbjct: 407 ILEAAQLANEMSEKGLIPEVQTFNILVNG 435
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + P++ YN L+K L + ++M + G+ P + T+ IL++ +C +
Sbjct: 385 KGIKPNVILYNTLIKGLSNQGMILEAAQLANEM-SEKGLIPEVQTFNILVNGLCKMGCVS 443
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+A LV + G+ PD F +N ++ GY
Sbjct: 444 DADGLVKVMISKGYFPDIFTFNILIHGY 471
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I K PDIFT+N L+ + +D M + G+ P++ TY L++ +C T
Sbjct: 452 MISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDN-GVDPDVYTYNSLLNGLCKTS 510
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMK 89
+ M + + G P+ F +N +++
Sbjct: 511 KFEDVMETYKTMVEKGCAPNLFTFNILLE 539
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K P++FT+N L++ LC+ R L +++M+ + P+ VT+ LID C
Sbjct: 522 MVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNK-SVNPDAVTFGTLIDGFCKNG 580
Query: 61 NLREAMRLVSALSDS 75
+L A L + ++
Sbjct: 581 DLDGAYTLFRKMEEA 595
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 3 FKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNL 62
F P +F+YN ++ L + +MR GI P++ ++TI + + C T
Sbjct: 104 FYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMR-DRGITPDVYSFTIRMKSFCKTSRP 162
Query: 63 REAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A+RL++ +S G + + Y T++ G+
Sbjct: 163 HAALRLLNNMSSQGCEMNVVAYCTVVGGF 191
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 37/88 (42%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PD T+ L+ CK L Y +M + + + TY I+I N+
Sbjct: 560 KSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVT 619
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
A +L + D PD + Y ++ G+
Sbjct: 620 MAEKLFQEMVDRCLGPDGYTYRLMVDGF 647
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD +TY +V CK ++ Y F+ +M + G P+L T +I+ +C + EA
Sbjct: 633 LGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMEN-GFIPSLTTLGRVINCLCVEDRVYEA 691
Query: 66 MRLVSALSDSGFKPDCFVYNTI 87
++ + G P+ NTI
Sbjct: 692 AGIIHRMVQKGLVPEAV--NTI 711
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSA 71
TYN ++ + ++T +M + P+ TY +++D C T N+ + +
Sbjct: 604 TYNIIIHAFTEKLNVTMAEKLFQEM-VDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLE 662
Query: 72 LSDSGFKP 79
+ ++GF P
Sbjct: 663 MMENGFIP 670
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
+++T N +V LCK + V F+ Q++ G+ P++VTY LI + + EA L
Sbjct: 234 NVYTLNIMVNALCKDGKMEKVGTFLSQVQEK-GVYPDIVTYNTLISAYSSKGLMEEAFEL 292
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
++A+ GF P + YNT++ G
Sbjct: 293 MNAMPGKGFSPGVYTYNTVING 314
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K++ P +Y+ LV LC L + D+M S IKP ++ +I C +
Sbjct: 541 MVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEM-ISKNIKPTVMICNSMIKGYCRSG 599
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
N + + + GF PDC YNT++ G+
Sbjct: 600 NASDGESFLEKMISEGFVPDCISYNTLIYGF 630
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D+ TYN ++ LCK + L ++M + P+ T TILID C NL+ AM L
Sbjct: 444 DVVTYNTILHGLCKRKMLGEADKLFNEM-TERALFPDSYTLTILIDGHCKLGNLQNAMEL 502
Query: 69 VSALSDSGFKPDCFVYNTIMKGY 91
+ + + D YNT++ G+
Sbjct: 503 FQKMKEKRIRLDVVTYNTLLDGF 525
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD+FTYN ++ C+ + + +M G+ P+ TYT +I+ + NL EA
Sbjct: 653 LVPDVFTYNSILHGFCRQNQMKEAEVVLRKM-IERGVNPDRSTYTCMINGFVSQDNLTEA 711
Query: 66 MRLVSALSDSGFKPD 80
R+ + GF PD
Sbjct: 712 FRIHDEMLQRGFSPD 726
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K++ D+ TYN L+ K + T M S I P ++Y+IL++ +C+ +L
Sbjct: 509 KRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADM-VSKEILPTPISYSILVNALCSKGHLA 567
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA R+ + KP + N+++KGY
Sbjct: 568 EAFRVWDEMISKNIKPTVMICNSMIKGY 595
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLG-IKPNLVTYTILIDNVCNT 59
+I + PD +YN L+ + +++ + V +M G + P++ TY ++ C
Sbjct: 611 MISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQ 670
Query: 60 KNLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
++EA ++ + + G PD Y ++ G+
Sbjct: 671 NQMKEAEVVLRKMIERGVNPDRSTYTCMINGF 702
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K + PDI TYN L+ + + ++ M G P + TY +I+ +C
Sbjct: 264 KGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGK-GFSPGVYTYNTVINGLCKHGKYE 322
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
A + + + SG PD Y +++
Sbjct: 323 RAKEVFAEMLRSGLSPDSTTYRSLL 347
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD Y L++ C+ ++ N ++M G ++VTY ++ +C K L EA
Sbjct: 406 LIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQ-GCAMDVVTYNTILHGLCKRKMLGEA 464
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKGY 91
+L + +++ PD + ++ G+
Sbjct: 465 DKLFNEMTERALFPDSYTLTILIDGH 490
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K P ++TYN ++ LCK +M S G+ P+ TY L+ C ++
Sbjct: 299 KGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRS-GLSPDSTTYRSLLMEACKKGDVV 357
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIM 88
E ++ S + PD ++++M
Sbjct: 358 ETEKVFSDMRSRDVVPDLVCFSSMM 382
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ + PD+ ++ ++ + +L + + ++ + G+ P+ V YTILI C +
Sbjct: 369 RDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEA-GLIPDNVIYTILIQGYCRKGMIS 427
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
AM L + + G D YNTI+ G
Sbjct: 428 VAMNLRNEMLQQGCAMDVVTYNTILHG 454
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 14 NFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALS 73
N L+ L + + + ++ S G+ N+ T I+++ +C + + +S +
Sbjct: 204 NALIGSLVRIGWVELAWGVYQEISRS-GVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQ 262
Query: 74 DSGFKPDCFVYNTIMKGY 91
+ G PD YNT++ Y
Sbjct: 263 EKGVYPDIVTYNTLISAY 280
>sp|Q9LN69|PPR50_ARATH Putative pentatricopeptide repeat-containing protein At1g19290
OS=Arabidopsis thaliana GN=At1g19290 PE=3 SV=2
Length = 904
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD +TY L+ + + D+M A GI PN+VTY LI +C N+ A R
Sbjct: 753 PDEYTYTILIHGCAIAGDINKAFTLRDEM-ALKGIIPNIVTYNALIKGLCKLGNVDRAQR 811
Query: 68 LVSALSDSGFKPDCFVYNTIMKG 90
L+ L G P+ YNT++ G
Sbjct: 812 LLHKLPQKGITPNAITYNTLIDG 834
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+ K + P+I TYN L+K LCK ++ + ++ GI PN +TY LID + +
Sbjct: 781 MALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLPQK-GITPNAITYNTLIDGLVKSG 839
Query: 61 NLREAMRLVSALSDSGF 77
N+ EAMRL + + G
Sbjct: 840 NVAEAMRLKEKMIEKGL 856
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
++ PD+FT + +V C+ ++ F + +SLG++ N+VTY LI+ ++
Sbjct: 220 EVSPDVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAMIGDVEG 279
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKGY 91
R++ +S+ G + Y +++KGY
Sbjct: 280 MTRVLRLMSERGVSRNVVTYTSLIKGY 306
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K+L D Y L+ C+ + D M +G++ N LI+ C + L
Sbjct: 325 KKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNM-IEIGVRTNTTICNSLINGYCKSGQLV 383
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKGY 91
EA ++ S ++D KPD YNT++ GY
Sbjct: 384 EAEQIFSRMNDWSLKPDHHTYNTLVDGY 411
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
K L P+ YN + LCK L + +S P+ TYTILI ++
Sbjct: 713 KLLVPNNIVYNVAIAGLCKAGKLEDARKLFSDLLSSDRFIPDEYTYTILIHGCAIAGDIN 772
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
+A L ++ G P+ YN ++KG
Sbjct: 773 KAFTLRDEMALKGIIPNIVTYNALIKG 799
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 14 NFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALS 73
N L+ CK L +M +KP+ TY L+D C + EA++L +
Sbjct: 370 NSLINGYCKSGQLVEAEQIFSRMN-DWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMC 428
Query: 74 DSGFKPDCFVYNTIMKGY 91
P YN ++KGY
Sbjct: 429 QKEVVPTVMTYNILLKGY 446
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ + L D T N ++ LCK + +D + KP + TY L
Sbjct: 497 VLARGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNI-FRCKPAVQTYQALSHGYYKVG 555
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
NL+EA + + G P +YNT++ G
Sbjct: 556 NLKEAFAVKEYMERKGIFPTIEMYNTLISG 585
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCN 58
K + P I YN L+ K R L V + V ++RA G+ P + TY LI CN
Sbjct: 570 KGIFPTIEMYNTLISGAFKYRHLNKVADLVIELRAR-GLTPTVATYGALITGWCN 623
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
L PD TYN LV C+ + DQM + P ++TY IL+ +
Sbjct: 397 LKPDHHTYNTLVDGYCRAGYVDEALKLCDQM-CQKEVVPTVMTYNILLKGYSRIGAFHDV 455
Query: 66 MRLVSALSDSGFKPDCFVYNTIMKG 90
+ L + G D +T+++
Sbjct: 456 LSLWKMMLKRGVNADEISCSTLLEA 480
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K L D+ TY +V +CK + N + +M + IKP++V Y+ +ID +C
Sbjct: 252 MVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEET-HIKPDVVIYSAIIDRLCKDG 310
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ +A L S + + G P+ F YN ++ G+
Sbjct: 311 HHSDAQYLFSEMLEKGIAPNVFTYNCMIDGF 341
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+++P +I+++N L+KC C C L+ + ++ LG +P++VT+ L+ +C +
Sbjct: 135 RRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKL-TKLGFQPDVVTFNTLLHGLCLEDRIS 193
Query: 64 EAMRLVSALSDSGF 77
EA+ L + ++GF
Sbjct: 194 EALALFGYMVETGF 207
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67
PD TYN ++ CK + D M + P++VT+ +ID C K + E M+
Sbjct: 399 PDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS-----PDVVTFNTIIDVYCRAKRVDEGMQ 453
Query: 68 LVSALSDSGFKPDCFVYNTIMKGY 91
L+ +S G + YNT++ G+
Sbjct: 454 LLREISRRGLVANTTTYNTLIHGF 477
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68
D YN ++ +CK + ++ + G++P++ TY ++I C + +A L
Sbjct: 536 DTVAYNIIIHGMCKGSKVDEAWDLFCSLPIH-GVEPDVQTYNVMISGFCGKSAISDANVL 594
Query: 69 VSALSDSGFKPDCFVYNTIMKG 90
+ D+G +PD YNT+++G
Sbjct: 595 FHKMKDNGHEPDNSTYNTLIRG 616
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLRE 64
+ PD+ Y+ ++ LCK + +M GI PN+ TY +ID C+ +
Sbjct: 291 HIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEK-GIAPNVFTYNCMIDGFCSFGRWSD 349
Query: 65 AMRLVSALSDSGFKPDCFVYNTIMKG 90
A RL+ + + PD +N ++
Sbjct: 350 AQRLLRDMIEREINPDVLTFNALISA 375
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63
+ L + TYN L+ C+ +L + +M S G+ P+ +T IL+ C + L
Sbjct: 461 RGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEM-ISHGVCPDTITCNILLYGFCENEKLE 519
Query: 64 EAMRLVSALSDSGFKPDCFVYNTIMKG 90
EA+ L + S D YN I+ G
Sbjct: 520 EALELFEVIQMSKIDLDTVAYNIIIHG 546
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
+I + PD T N L+ C+ L + ++ S I + V Y I+I +C
Sbjct: 493 MISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMS-KIDLDTVAYNIIIHGMCKGS 551
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
+ EA L +L G +PD YN ++ G+
Sbjct: 552 KVDEAWDLFCSLPIHGVEPDVQTYNVMISGF 582
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAM 66
PD+ T+N ++ C+ + + + ++ + G+ N TY LI C NL A
Sbjct: 429 SPDVVTFNTIIDVYCRAKRVDEGMQLLREI-SRRGLVANTTTYNTLIHGFCEVDNLNAAQ 487
Query: 67 RLVSALSDSGFKPDCFVYNTIMKGY 91
L + G PD N ++ G+
Sbjct: 488 DLFQEMISHGVCPDTITCNILLYGF 512
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 16/98 (16%)
Query: 8 PDIFTYNFLVKCLC---KCRSLTTVYNFV------------DQMRASLGIKPNLVTYTIL 52
PD+ T+N L+ LC + ++ ++ DQM +G+ P ++T+ L
Sbjct: 174 PDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQM-VEIGLTPVVITFNTL 232
Query: 53 IDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
I+ +C + EA LV+ + G D Y TI+ G
Sbjct: 233 INGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNG 270
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREA 65
+ PD+ TYN ++ C +++ +M+ + G +P+ TY LI + ++
Sbjct: 568 VEPDVQTYNVMISGFCGKSAISDANVLFHKMKDN-GHEPDNSTYNTLIRGCLKAGEIDKS 626
Query: 66 MRLVSALSDSGFKPDCF 82
+ L+S + +GF D F
Sbjct: 627 IELISEMRSNGFSGDAF 643
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK 60
++ K + P++FTYN ++ C + + M I P+++T+ LI
Sbjct: 322 MLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDM-IEREINPDVLTFNALISASVKEG 380
Query: 61 NLREAMRLVSALSDSGFKPDCFVYNTIMKGY 91
L EA +L + PD YN+++ G+
Sbjct: 381 KLFEAEKLCDEMLHRCIFPDTVTYNSMIYGF 411
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 45 NLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIMKG 90
N+ ++ ILI C+ L ++ L+ GF+PD +NT++ G
Sbjct: 140 NIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHG 185
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.142 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,072,362
Number of Sequences: 539616
Number of extensions: 922375
Number of successful extensions: 6125
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 3427
Number of HSP's gapped (non-prelim): 1972
length of query: 91
length of database: 191,569,459
effective HSP length: 61
effective length of query: 30
effective length of database: 158,652,883
effective search space: 4759586490
effective search space used: 4759586490
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)