Query 038287
Match_columns 91
No_of_seqs 111 out of 1242
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 16:12:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038287.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038287hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 99.9 1.4E-25 4.7E-30 140.7 9.5 90 1-91 96-185 (501)
2 3spa_A Mtrpol, DNA-directed RN 99.9 7.4E-24 2.5E-28 140.0 6.7 86 4-90 159-245 (1134)
3 4g26_A Pentatricopeptide repea 99.9 2.8E-23 9.7E-28 130.3 9.0 90 1-91 131-220 (501)
4 3spa_A Mtrpol, DNA-directed RN 99.9 4.4E-22 1.5E-26 131.7 8.9 83 9-91 126-210 (1134)
5 2xpi_A Anaphase-promoting comp 98.7 1.4E-07 4.7E-12 59.4 8.7 79 9-89 440-524 (597)
6 2xpi_A Anaphase-promoting comp 98.7 7.7E-08 2.6E-12 60.6 7.5 79 8-91 82-160 (597)
7 1w3b_A UDP-N-acetylglucosamine 97.7 0.00057 1.9E-08 41.0 9.2 60 11-73 238-298 (388)
8 3ma5_A Tetratricopeptide repea 97.7 0.00072 2.5E-08 33.3 9.0 64 8-74 5-69 (100)
9 1w3b_A UDP-N-acetylglucosamine 97.7 0.00089 3E-08 40.2 9.7 62 10-73 271-332 (388)
10 2fo7_A Synthetic consensus TPR 97.7 0.001 3.5E-08 33.3 9.7 65 9-75 34-98 (136)
11 2ho1_A Type 4 fimbrial biogene 97.6 0.0013 4.5E-08 37.0 9.5 63 10-74 71-133 (252)
12 1na0_A Designed protein CTPR3; 97.6 0.0011 3.6E-08 32.9 9.5 60 12-73 11-70 (125)
13 1b89_A Protein (clathrin heavy 97.6 9.2E-05 3.1E-09 46.5 4.9 67 8-90 120-186 (449)
14 3gyz_A Chaperone protein IPGC; 97.6 0.0017 5.8E-08 34.8 9.0 60 12-74 38-98 (151)
15 3k9i_A BH0479 protein; putativ 97.6 0.00095 3.2E-08 33.7 7.6 64 9-75 26-90 (117)
16 2y4t_A DNAJ homolog subfamily 97.6 0.00098 3.4E-08 40.5 8.8 64 9-74 25-88 (450)
17 1na0_A Designed protein CTPR3; 97.6 0.0014 4.8E-08 32.5 8.9 66 8-75 41-106 (125)
18 3vtx_A MAMA; tetratricopeptide 97.5 0.0022 7.7E-08 34.5 9.4 71 9-84 106-177 (184)
19 2fo7_A Synthetic consensus TPR 97.5 0.0016 5.5E-08 32.6 9.4 61 11-73 70-130 (136)
20 2gw1_A Mitochondrial precursor 97.5 0.0034 1.2E-07 38.6 10.2 66 8-76 37-103 (514)
21 3vtx_A MAMA; tetratricopeptide 97.4 0.0032 1.1E-07 33.9 8.9 64 9-75 4-68 (184)
22 1elr_A TPR2A-domain of HOP; HO 97.4 0.0024 8.2E-08 31.9 8.3 67 9-75 37-108 (131)
23 2y4t_A DNAJ homolog subfamily 97.4 0.0031 1E-07 38.4 9.5 65 8-75 58-123 (450)
24 2kck_A TPR repeat; tetratricop 97.4 0.0022 7.5E-08 31.2 9.2 61 12-74 8-68 (112)
25 2pl2_A Hypothetical conserved 97.4 0.0021 7.3E-08 35.9 8.3 67 6-75 1-68 (217)
26 2vq2_A PILW, putative fimbrial 97.4 0.0042 1.4E-07 34.0 10.4 62 11-74 43-105 (225)
27 2l6j_A TPR repeat-containing p 97.4 0.0026 8.8E-08 31.2 8.7 64 9-75 3-67 (111)
28 2kat_A Uncharacterized protein 97.4 0.0031 1.1E-07 31.5 9.1 64 8-74 17-81 (115)
29 3cv0_A Peroxisome targeting si 97.3 0.003 1E-07 36.6 8.5 60 11-73 207-267 (327)
30 3as5_A MAMA; tetratricopeptide 97.3 0.0044 1.5E-07 32.8 9.3 61 11-73 43-103 (186)
31 2xcb_A PCRH, regulatory protei 97.3 0.004 1.4E-07 32.4 9.2 59 13-74 21-80 (142)
32 3gyz_A Chaperone protein IPGC; 97.3 0.0047 1.6E-07 33.0 8.7 64 9-75 69-133 (151)
33 4eqf_A PEX5-related protein; a 97.3 0.0046 1.6E-07 36.7 9.4 62 9-73 98-160 (365)
34 2vgx_A Chaperone SYCD; alterna 97.3 0.0045 1.5E-07 32.7 9.1 58 13-73 24-82 (148)
35 4eqf_A PEX5-related protein; a 97.3 0.0031 1E-07 37.5 8.5 63 9-74 212-275 (365)
36 1b89_A Protein (clathrin heavy 97.3 2.3E-05 7.9E-10 49.1 -0.7 56 11-73 33-88 (449)
37 1xnf_A Lipoprotein NLPI; TPR, 97.3 0.0055 1.9E-07 34.7 9.2 59 12-73 45-104 (275)
38 2vq2_A PILW, putative fimbrial 97.3 0.0061 2.1E-07 33.3 9.3 62 11-73 77-140 (225)
39 4gco_A Protein STI-1; structur 97.3 0.0046 1.6E-07 31.8 9.4 63 9-74 46-109 (126)
40 2gw1_A Mitochondrial precursor 97.3 0.0038 1.3E-07 38.4 8.8 62 11-75 7-68 (514)
41 2lni_A Stress-induced-phosphop 97.3 0.0042 1.4E-07 31.2 8.8 62 10-74 16-78 (133)
42 3mkr_A Coatomer subunit epsilo 97.3 0.004 1.4E-07 36.6 8.4 29 10-38 130-158 (291)
43 3mkr_A Coatomer subunit epsilo 97.2 0.0026 8.8E-08 37.4 7.5 50 18-74 109-158 (291)
44 2pl2_A Hypothetical conserved 97.2 0.0037 1.3E-07 34.9 7.6 62 10-74 118-179 (217)
45 4ga2_A E3 SUMO-protein ligase 97.2 0.0053 1.8E-07 32.4 7.9 60 12-74 33-93 (150)
46 2dba_A Smooth muscle cell asso 97.2 0.0059 2E-07 31.3 9.3 63 9-74 27-93 (148)
47 3as5_A MAMA; tetratricopeptide 97.2 0.0073 2.5E-07 31.9 9.5 64 9-74 75-138 (186)
48 3sz7_A HSC70 cochaperone (SGT) 97.2 0.0074 2.5E-07 32.0 9.4 60 11-73 46-106 (164)
49 1hxi_A PEX5, peroxisome target 97.2 0.0055 1.9E-07 31.2 7.5 59 13-74 20-79 (121)
50 3upv_A Heat shock protein STI1 97.2 0.0059 2E-07 30.8 9.4 63 9-74 37-100 (126)
51 2kck_A TPR repeat; tetratricop 97.1 0.0052 1.8E-07 29.8 7.4 64 9-75 39-106 (112)
52 2vgx_A Chaperone SYCD; alterna 97.1 0.0078 2.7E-07 31.7 8.7 64 9-75 54-118 (148)
53 3cv0_A Peroxisome targeting si 97.1 0.012 4.2E-07 34.0 9.6 64 9-75 171-235 (327)
54 3sz7_A HSC70 cochaperone (SGT) 97.1 0.0084 2.9E-07 31.8 8.7 64 9-75 10-74 (164)
55 1xnf_A Lipoprotein NLPI; TPR, 97.1 0.0088 3E-07 33.8 8.7 65 8-75 75-140 (275)
56 3uq3_A Heat shock protein STI1 97.1 0.011 3.8E-07 32.9 9.4 59 13-73 142-200 (258)
57 1fch_A Peroxisomal targeting s 97.1 0.013 4.5E-07 34.6 9.6 63 9-74 97-160 (368)
58 1fch_A Peroxisomal targeting s 97.1 0.012 4.2E-07 34.7 9.3 62 10-74 217-279 (368)
59 2lni_A Stress-induced-phosphop 97.0 0.008 2.7E-07 30.1 9.2 64 9-75 49-113 (133)
60 1na3_A Designed protein CTPR2; 97.0 0.0063 2.2E-07 28.6 8.7 63 10-75 9-72 (91)
61 1elw_A TPR1-domain of HOP; HOP 97.0 0.0076 2.6E-07 29.4 9.3 64 9-75 37-101 (118)
62 2ho1_A Type 4 fimbrial biogene 97.0 0.014 4.9E-07 32.6 9.9 63 9-74 140-203 (252)
63 1hh8_A P67PHOX, NCF-2, neutrop 97.0 0.013 4.5E-07 32.0 9.5 67 7-75 34-100 (213)
64 3uq3_A Heat shock protein STI1 97.0 0.014 4.8E-07 32.5 8.8 62 10-74 5-66 (258)
65 3q49_B STIP1 homology and U bo 97.0 0.0095 3.3E-07 30.2 9.5 63 9-74 8-71 (137)
66 1elw_A TPR1-domain of HOP; HOP 97.0 0.008 2.7E-07 29.3 8.5 63 10-75 4-67 (118)
67 2vyi_A SGTA protein; chaperone 97.0 0.0087 3E-07 29.7 9.4 62 10-74 46-108 (131)
68 3upv_A Heat shock protein STI1 97.0 0.0094 3.2E-07 30.1 8.6 63 10-75 4-67 (126)
69 3q49_B STIP1 homology and U bo 97.0 0.01 3.4E-07 30.2 9.4 63 9-74 42-105 (137)
70 2q7f_A YRRB protein; TPR, prot 97.0 0.015 5.3E-07 32.2 9.6 58 13-72 60-117 (243)
71 2xev_A YBGF; tetratricopeptide 96.9 0.01 3.5E-07 29.8 9.1 62 11-75 40-105 (129)
72 3qww_A SET and MYND domain-con 96.9 0.012 4.1E-07 36.9 8.7 64 10-73 340-409 (433)
73 2xcb_A PCRH, regulatory protei 96.9 0.012 4.2E-07 30.5 8.7 64 9-75 51-115 (142)
74 2r5s_A Uncharacterized protein 96.9 0.011 3.9E-07 31.7 7.7 45 28-75 92-137 (176)
75 2ooe_A Cleavage stimulation fa 96.9 0.029 1E-06 35.3 10.4 74 8-87 11-85 (530)
76 2q7f_A YRRB protein; TPR, prot 96.9 0.018 6E-07 31.9 9.5 65 9-75 90-154 (243)
77 3urz_A Uncharacterized protein 96.9 0.018 6.2E-07 31.9 8.4 57 16-75 60-117 (208)
78 4gcn_A Protein STI-1; structur 96.8 0.014 4.7E-07 29.9 8.2 62 10-74 42-111 (127)
79 2vyi_A SGTA protein; chaperone 96.8 0.012 4.1E-07 29.2 8.7 64 9-75 11-75 (131)
80 4gcn_A Protein STI-1; structur 96.8 0.015 5.3E-07 29.7 9.1 61 11-74 9-70 (127)
81 2ff4_A Probable regulatory pro 96.8 0.031 1E-06 34.4 9.5 68 13-83 174-247 (388)
82 3hym_B Cell division cycle pro 96.8 0.021 7.1E-07 33.0 8.4 26 48-73 238-263 (330)
83 2dba_A Smooth muscle cell asso 96.7 0.018 6E-07 29.4 9.4 63 10-75 65-128 (148)
84 2ond_A Cleavage stimulation fa 96.7 0.019 6.4E-07 33.7 8.0 64 9-75 98-163 (308)
85 1a17_A Serine/threonine protei 96.7 0.02 6.8E-07 29.8 9.4 63 9-74 46-109 (166)
86 4i17_A Hypothetical protein; T 96.7 0.027 9.2E-07 31.3 10.0 59 12-73 44-103 (228)
87 3ieg_A DNAJ homolog subfamily 96.7 0.034 1.1E-06 32.4 8.9 64 9-75 36-100 (359)
88 3qwp_A SET and MYND domain-con 96.7 0.023 7.7E-07 35.5 8.4 64 10-73 329-398 (429)
89 1elr_A TPR2A-domain of HOP; HO 96.6 0.018 6.1E-07 28.6 8.9 64 10-75 4-67 (131)
90 3hym_B Cell division cycle pro 96.6 0.035 1.2E-06 32.1 8.8 59 12-73 161-220 (330)
91 4abn_A Tetratricopeptide repea 96.6 0.033 1.1E-06 34.9 9.0 73 9-86 101-175 (474)
92 4gco_A Protein STI-1; structur 96.6 0.022 7.5E-07 29.2 9.1 62 11-75 14-76 (126)
93 2kc7_A BFR218_protein; tetratr 96.6 0.017 5.7E-07 27.8 7.1 56 17-75 7-64 (99)
94 3ieg_A DNAJ homolog subfamily 96.6 0.04 1.4E-06 32.1 9.1 64 9-74 153-216 (359)
95 3n71_A Histone lysine methyltr 96.6 0.029 9.8E-07 35.7 8.7 64 10-73 351-420 (490)
96 3edt_B KLC 2, kinesin light ch 96.5 0.027 9.2E-07 31.7 7.8 65 10-74 127-197 (283)
97 3rkv_A Putative peptidylprolyl 96.5 0.028 9.7E-07 29.6 8.4 66 11-81 64-130 (162)
98 2c2l_A CHIP, carboxy terminus 96.5 0.046 1.6E-06 31.8 9.1 62 9-73 37-99 (281)
99 3edt_B KLC 2, kinesin light ch 96.5 0.036 1.2E-06 31.2 8.1 66 9-74 42-113 (283)
100 4i17_A Hypothetical protein; T 96.5 0.038 1.3E-06 30.6 9.1 67 8-75 5-71 (228)
101 2xev_A YBGF; tetratricopeptide 96.5 0.025 8.5E-07 28.3 8.0 58 15-75 7-68 (129)
102 3u4t_A TPR repeat-containing p 96.5 0.034 1.2E-06 31.4 8.0 62 12-74 39-102 (272)
103 4abn_A Tetratricopeptide repea 96.5 0.021 7.1E-07 35.8 7.5 64 9-75 136-208 (474)
104 4gyw_A UDP-N-acetylglucosamine 96.5 0.033 1.1E-06 37.0 8.6 62 10-74 9-71 (723)
105 3nf1_A KLC 1, kinesin light ch 96.4 0.034 1.2E-06 31.9 7.8 65 10-74 153-223 (311)
106 2c2l_A CHIP, carboxy terminus 96.4 0.058 2E-06 31.4 9.1 64 9-75 3-67 (281)
107 2yhc_A BAMD, UPF0169 lipoprote 96.4 0.048 1.6E-06 30.4 8.5 65 11-75 5-70 (225)
108 2ond_A Cleavage stimulation fa 96.4 0.062 2.1E-06 31.4 9.4 63 11-73 204-268 (308)
109 3nf1_A KLC 1, kinesin light ch 96.4 0.049 1.7E-06 31.1 8.2 66 10-75 111-182 (311)
110 1p5q_A FKBP52, FK506-binding p 96.3 0.071 2.4E-06 31.9 9.1 63 10-75 196-259 (336)
111 1wao_1 Serine/threonine protei 96.3 0.063 2.2E-06 33.8 9.1 64 9-75 39-103 (477)
112 3fp2_A TPR repeat-containing p 96.3 0.066 2.2E-06 33.2 9.0 61 10-73 310-371 (537)
113 1hxi_A PEX5, peroxisome target 96.3 0.036 1.2E-06 28.1 8.5 63 9-74 50-113 (121)
114 3u4t_A TPR repeat-containing p 96.3 0.052 1.8E-06 30.6 7.8 62 11-75 75-137 (272)
115 3fp2_A TPR repeat-containing p 96.2 0.063 2.2E-06 33.3 8.5 63 9-74 343-406 (537)
116 4ga2_A E3 SUMO-protein ligase 96.2 0.05 1.7E-06 28.6 7.4 63 9-74 64-128 (150)
117 4gyw_A UDP-N-acetylglucosamine 96.1 0.097 3.3E-06 34.9 9.4 59 12-73 79-138 (723)
118 2vsy_A XCC0866; transferase, g 96.1 0.11 3.7E-06 33.1 9.4 59 12-73 59-118 (568)
119 1ihg_A Cyclophilin 40; ppiase 96.0 0.11 3.7E-06 31.7 8.8 63 10-75 273-336 (370)
120 1p5q_A FKBP52, FK506-binding p 96.0 0.075 2.6E-06 31.8 8.0 63 10-75 147-225 (336)
121 2e2e_A Formate-dependent nitri 96.0 0.066 2.2E-06 28.5 8.2 60 12-74 80-143 (177)
122 3ly7_A Transcriptional activat 95.9 0.14 4.7E-06 31.7 8.9 73 8-85 275-347 (372)
123 2fbn_A 70 kDa peptidylprolyl i 95.9 0.083 2.8E-06 28.7 8.7 62 11-75 89-151 (198)
124 3qky_A Outer membrane assembly 95.8 0.11 3.7E-06 29.5 9.4 64 9-75 14-81 (261)
125 2e2e_A Formate-dependent nitri 95.8 0.085 2.9E-06 28.0 9.5 65 8-75 42-110 (177)
126 3qou_A Protein YBBN; thioredox 95.8 0.081 2.8E-06 30.8 7.3 61 11-74 118-179 (287)
127 2vsy_A XCC0866; transferase, g 95.8 0.14 4.9E-06 32.5 8.8 64 9-75 22-86 (568)
128 2if4_A ATFKBP42; FKBP-like, al 95.7 0.12 4.1E-06 30.9 7.8 60 12-74 232-292 (338)
129 1a17_A Serine/threonine protei 95.6 0.095 3.3E-06 27.1 9.1 62 11-75 14-76 (166)
130 3mv2_B Coatomer subunit epsilo 95.6 0.18 6.2E-06 30.3 8.9 68 7-75 97-165 (310)
131 1kt0_A FKBP51, 51 kDa FK506-bi 95.6 0.21 7.3E-06 31.2 8.9 63 10-75 317-380 (457)
132 2yhc_A BAMD, UPF0169 lipoprote 95.6 0.13 4.6E-06 28.6 7.8 56 17-75 154-213 (225)
133 2qfc_A PLCR protein; TPR, HTH, 95.5 0.16 5.4E-06 29.4 8.8 65 10-74 155-224 (293)
134 2h6f_A Protein farnesyltransfe 95.5 0.13 4.4E-06 31.6 7.7 58 13-73 100-159 (382)
135 2h6f_A Protein farnesyltransfe 95.4 0.23 7.7E-06 30.5 8.5 64 9-75 130-195 (382)
136 1qqe_A Vesicular transport pro 95.3 0.19 6.6E-06 29.2 8.1 66 11-76 118-188 (292)
137 3qou_A Protein YBBN; thioredox 95.3 0.2 6.8E-06 29.2 8.1 53 20-75 195-248 (287)
138 3ro3_A PINS homolog, G-protein 95.3 0.11 3.9E-06 26.4 7.6 64 11-74 50-117 (164)
139 1qqe_A Vesicular transport pro 95.3 0.2 6.9E-06 29.1 8.0 63 11-74 159-227 (292)
140 3u3w_A Transcriptional activat 95.3 0.15 5.1E-06 29.5 7.2 64 11-74 156-224 (293)
141 1hh8_A P67PHOX, NCF-2, neutrop 95.2 0.16 5.6E-06 27.5 10.8 67 9-75 70-150 (213)
142 1ouv_A Conserved hypothetical 95.2 0.2 6.8E-06 28.5 9.7 15 23-37 55-69 (273)
143 3ro2_A PINS homolog, G-protein 95.2 0.19 6.4E-06 28.8 7.4 63 12-74 225-291 (338)
144 2hr2_A Hypothetical protein; a 95.0 0.19 6.4E-06 27.3 7.4 64 11-74 58-130 (159)
145 3ro3_A PINS homolog, G-protein 95.0 0.15 5E-06 26.0 7.4 64 11-74 10-77 (164)
146 4a1s_A PINS, partner of inscut 95.0 0.23 8E-06 29.7 7.7 63 12-74 265-331 (411)
147 3urz_A Uncharacterized protein 95.0 0.21 7.1E-06 27.5 8.5 57 16-75 10-83 (208)
148 2v5f_A Prolyl 4-hydroxylase su 95.0 0.14 4.6E-06 25.3 8.9 66 9-74 4-74 (104)
149 1ouv_A Conserved hypothetical 94.9 0.25 8.6E-06 28.0 9.7 62 11-76 75-144 (273)
150 3ulq_A Response regulator aspa 94.9 0.32 1.1E-05 29.1 8.4 64 11-74 225-292 (383)
151 2pzi_A Probable serine/threoni 94.9 0.19 6.3E-06 33.1 7.4 64 9-75 432-496 (681)
152 3q15_A PSP28, response regulat 94.8 0.26 8.9E-06 29.5 7.6 64 11-74 223-289 (378)
153 1wy6_A Hypothetical protein ST 94.8 0.21 7.3E-06 27.0 7.9 67 11-79 92-158 (172)
154 3sf4_A G-protein-signaling mod 94.8 0.28 9.7E-06 29.1 7.6 64 11-74 228-295 (406)
155 2r5s_A Uncharacterized protein 94.7 0.057 2E-06 28.9 4.1 56 15-73 11-67 (176)
156 3bee_A Putative YFRE protein; 94.6 0.17 5.8E-06 24.7 9.4 65 8-75 4-72 (93)
157 4a1s_A PINS, partner of inscut 94.5 0.34 1.2E-05 29.0 7.5 64 11-74 224-291 (411)
158 1kt0_A FKBP51, 51 kDa FK506-bi 94.4 0.41 1.4E-05 29.9 7.9 62 11-75 269-346 (457)
159 3ulq_A Response regulator aspa 94.4 0.29 9.9E-06 29.3 7.1 64 11-74 185-252 (383)
160 2ifu_A Gamma-SNAP; membrane fu 94.4 0.36 1.2E-05 28.2 7.3 63 11-74 117-183 (307)
161 3gw4_A Uncharacterized protein 94.4 0.28 9.6E-06 26.2 7.0 66 9-74 25-94 (203)
162 3mv2_B Coatomer subunit epsilo 94.2 0.5 1.7E-05 28.5 8.7 64 9-75 135-207 (310)
163 2ooe_A Cleavage stimulation fa 94.1 0.62 2.1E-05 29.3 9.4 51 22-75 403-454 (530)
164 2qfc_A PLCR protein; TPR, HTH, 94.1 0.41 1.4E-05 27.7 7.1 63 11-73 197-264 (293)
165 3ro2_A PINS homolog, G-protein 94.0 0.44 1.5E-05 27.2 8.7 56 15-73 10-70 (338)
166 4g1t_A Interferon-induced prot 94.0 0.59 2E-05 28.6 9.0 64 10-73 51-121 (472)
167 1zu2_A Mitochondrial import re 93.9 0.32 1.1E-05 26.4 6.0 75 9-88 35-131 (158)
168 1v54_E Cytochrome C oxidase po 93.9 0.29 1E-05 24.8 6.6 77 11-89 9-87 (109)
169 3k9i_A BH0479 protein; putativ 93.8 0.078 2.7E-06 26.4 3.3 53 22-75 2-56 (117)
170 1ihg_A Cyclophilin 40; ppiase 93.8 0.61 2.1E-05 28.4 7.6 64 12-75 225-302 (370)
171 3gw4_A Uncharacterized protein 93.8 0.38 1.3E-05 25.7 7.1 64 11-74 108-175 (203)
172 2if4_A ATFKBP42; FKBP-like, al 93.7 0.46 1.6E-05 28.4 7.0 62 11-75 180-259 (338)
173 2fbn_A 70 kDa peptidylprolyl i 93.7 0.41 1.4E-05 25.9 9.1 65 11-75 39-117 (198)
174 1wao_1 Serine/threonine protei 93.4 0.42 1.4E-05 30.1 6.6 54 19-75 15-69 (477)
175 3sf4_A G-protein-signaling mod 93.2 0.74 2.5E-05 27.3 9.6 63 8-73 7-74 (406)
176 2ifu_A Gamma-SNAP; membrane fu 93.1 0.73 2.5E-05 26.9 7.6 63 11-73 156-222 (307)
177 3n71_A Histone lysine methyltr 93.0 0.87 3E-05 29.1 7.5 54 20-73 319-378 (490)
178 2l6j_A TPR repeat-containing p 93.0 0.3 1E-05 23.4 4.6 34 9-45 37-70 (111)
179 3u3w_A Transcriptional activat 92.7 0.83 2.8E-05 26.4 8.8 60 15-74 120-183 (293)
180 3qwp_A SET and MYND domain-con 92.6 0.56 1.9E-05 29.3 6.3 57 17-73 294-356 (429)
181 3qww_A SET and MYND domain-con 92.6 0.7 2.4E-05 29.0 6.7 52 22-73 310-367 (433)
182 2hr2_A Hypothetical protein; a 92.6 0.68 2.3E-05 25.1 8.1 59 13-74 14-85 (159)
183 3qky_A Outer membrane assembly 92.3 0.84 2.9E-05 25.7 8.5 66 10-75 52-126 (261)
184 2y69_E Cytochrome C oxidase su 92.2 0.75 2.6E-05 24.7 6.6 78 10-89 51-130 (152)
185 3rkv_A Putative peptidylprolyl 92.1 0.67 2.3E-05 24.1 7.7 65 11-75 12-92 (162)
186 1v54_E Cytochrome C oxidase po 91.1 0.85 2.9E-05 23.2 8.3 48 5-54 40-87 (109)
187 3q15_A PSP28, response regulat 90.9 1.6 5.5E-05 26.1 8.1 65 10-74 141-210 (378)
188 3u64_A Protein TP_0956; tetrat 90.9 1.7 5.7E-05 26.2 8.8 75 10-87 199-283 (301)
189 1xi4_A Clathrin heavy chain; a 90.7 2.2 7.6E-05 31.4 8.0 60 9-75 1104-1163(1630)
190 4b4t_Q 26S proteasome regulato 90.3 1.3 4.4E-05 26.7 6.1 57 18-74 12-83 (434)
191 2pzi_A Probable serine/threoni 89.7 0.93 3.2E-05 29.8 5.4 56 14-73 505-561 (681)
192 2kat_A Uncharacterized protein 89.4 1.1 3.7E-05 21.8 5.2 45 28-75 3-48 (115)
193 2y69_E Cytochrome C oxidase su 89.0 1.7 5.7E-05 23.4 8.3 48 5-54 83-130 (152)
194 1pc2_A Mitochondria fission pr 88.8 1.7 5.9E-05 23.4 8.0 70 8-81 30-104 (152)
195 2b7e_A PRE-mRNA processing pro 88.4 1 3.6E-05 20.3 3.5 30 26-56 2-31 (59)
196 4f3v_A ESX-1 secretion system 88.1 2.8 9.5E-05 24.9 9.0 62 13-75 174-237 (282)
197 4b4t_Q 26S proteasome regulato 88.0 3 0.0001 25.1 8.5 65 10-74 135-203 (434)
198 4f3v_A ESX-1 secretion system 87.7 1.5 5.2E-05 26.0 5.0 67 12-80 137-205 (282)
199 2dod_A Transcription elongatio 87.3 1.5 5.1E-05 21.1 4.0 34 25-59 15-48 (82)
200 1hz4_A MALT regulatory protein 87.0 3.3 0.00011 24.5 8.7 64 11-74 136-202 (373)
201 4e6h_A MRNA 3'-END-processing 86.4 5.6 0.00019 26.6 10.5 77 8-86 64-144 (679)
202 2ff4_A Probable regulatory pro 86.1 2.3 8E-05 26.2 5.3 43 9-51 204-250 (388)
203 3rjv_A Putative SEL1 repeat pr 85.8 3 0.0001 22.9 8.3 62 10-76 18-83 (212)
204 1na3_A Designed protein CTPR2; 85.6 1.6 5.6E-05 19.8 6.8 45 9-56 42-87 (91)
205 1xi4_A Clathrin heavy chain; a 85.2 4.8 0.00017 29.8 7.0 56 9-67 1133-1188(1630)
206 4g1t_A Interferon-induced prot 84.8 4.9 0.00017 24.5 7.5 61 11-74 335-400 (472)
207 3mkq_A Coatomer beta'-subunit; 83.5 2.4 8.2E-05 27.9 4.8 29 45-73 680-708 (814)
208 1uzc_A Hypothetical protein FL 83.4 2.4 8.2E-05 19.8 3.8 34 25-59 13-46 (71)
209 4gns_B Protein CSD3, chitin bi 82.3 7.3 0.00025 26.6 6.7 51 20-73 347-398 (754)
210 3rjv_A Putative SEL1 repeat pr 81.6 4.8 0.00016 22.1 8.6 61 12-75 87-158 (212)
211 3ffl_A Anaphase-promoting comp 80.8 5.2 0.00018 22.0 5.0 69 5-73 13-90 (167)
212 3mkq_B Coatomer subunit alpha; 80.0 5.7 0.0002 22.0 6.2 50 17-73 12-61 (177)
213 1klx_A Cysteine rich protein B 77.8 5.4 0.00018 20.4 9.4 65 10-78 57-129 (138)
214 1zbp_A Hypothetical protein VP 77.1 9.3 0.00032 22.8 6.0 50 20-72 7-57 (273)
215 2ko4_A Mediator of RNA polymer 76.4 2.4 8.3E-05 20.3 2.3 36 32-70 25-60 (81)
216 1oai_A Nuclear RNA export fact 76.0 3.8 0.00013 18.4 2.8 25 23-47 33-57 (59)
217 1hz4_A MALT regulatory protein 76.0 9.8 0.00033 22.4 8.7 62 13-74 96-163 (373)
218 4e6h_A MRNA 3'-END-processing 75.3 16 0.00054 24.5 7.9 49 25-75 485-533 (679)
219 2nsz_A Programmed cell death p 74.8 7 0.00024 20.2 6.0 67 12-80 9-77 (129)
220 4b4t_R RPN7, 26S proteasome re 74.6 13 0.00044 23.2 6.6 61 13-73 134-195 (429)
221 3hzj_A Rabgap1L, RAB GTPase-ac 72.7 7.8 0.00027 23.0 4.4 45 32-77 176-220 (310)
222 2ion_A PDCD4, programmed cell 71.3 9.8 0.00034 20.4 6.0 67 12-80 11-79 (152)
223 3qye_A TBC1 domain family memb 70.5 6.5 0.00022 23.5 3.8 47 31-78 209-255 (331)
224 2xm6_A Protein corresponding t 69.4 18 0.0006 22.5 9.2 63 10-76 363-433 (490)
225 2uwj_G Type III export protein 69.3 9.5 0.00033 19.4 4.5 60 17-84 46-105 (115)
226 2p58_C Putative type III secre 67.1 11 0.00037 19.2 5.3 54 16-76 46-99 (116)
227 2qq8_A TBC1 domain family memb 65.7 5.9 0.0002 23.9 2.9 44 32-76 215-258 (334)
228 2xm6_A Protein corresponding t 65.2 22 0.00075 22.1 9.4 12 24-35 93-104 (490)
229 2qfz_A TBC1 domain family memb 64.8 18 0.0006 21.8 4.9 47 32-79 231-277 (345)
230 3mkq_A Coatomer beta'-subunit; 62.0 31 0.0011 22.7 8.0 65 9-73 680-763 (814)
231 3ygs_P Procaspase 9; apoptosis 56.9 16 0.00055 17.8 4.6 40 24-68 51-90 (97)
232 1zu2_A Mitochondrial import re 56.5 22 0.00074 19.2 4.7 57 9-74 79-146 (158)
233 4hl4_A TBC1 domain family memb 55.4 24 0.00084 20.7 4.3 45 32-78 190-235 (292)
234 4h7y_A Dual specificity protei 53.6 26 0.00088 19.2 6.2 57 23-81 73-129 (161)
235 1fkm_A Protein (GYP1P), ORF YO 52.6 16 0.00055 22.7 3.2 44 32-76 218-261 (396)
236 2wvi_A Mitotic checkpoint seri 52.6 27 0.00092 19.1 6.2 53 28-81 78-131 (164)
237 1dce_A Protein (RAB geranylger 52.3 46 0.0016 21.7 8.8 65 8-75 105-173 (567)
238 4a1g_A Mitotic checkpoint seri 52.0 27 0.00091 18.8 6.1 52 28-80 83-135 (152)
239 2yru_A Steroid receptor RNA ac 51.3 24 0.00082 18.1 6.0 64 11-75 20-90 (118)
240 1zl8_A LIN-7; heterodimer, alp 51.2 6.7 0.00023 17.1 1.0 20 61-80 8-27 (53)
241 3kae_A CDC27, possible protein 50.9 32 0.0011 19.5 7.0 53 18-71 70-139 (242)
242 1q2z_A ATP-dependent DNA helic 49.2 6.4 0.00022 20.3 1.0 51 24-78 41-95 (120)
243 3mwm_A ZUR, putative metal upt 47.9 28 0.00097 18.0 4.4 47 14-61 17-63 (139)
244 3bu8_A Telomeric repeat-bindin 46.6 41 0.0014 19.5 6.1 49 26-75 88-143 (235)
245 2o03_A Probable zinc uptake re 46.3 29 0.001 17.7 4.8 47 14-61 14-60 (131)
246 3cqc_A Nuclear pore complex pr 44.7 21 0.00071 21.1 2.8 27 12-38 36-62 (270)
247 2fv2_A RCD1 required for cell 44.3 43 0.0015 20.0 3.9 50 24-73 187-236 (268)
248 4ets_A Ferric uptake regulatio 43.8 37 0.0013 18.2 4.4 48 27-75 14-61 (162)
249 2rg8_A Programmed cell death p 43.4 32 0.0011 18.6 3.2 61 12-74 12-73 (165)
250 1wgl_A TOLL-interacting protei 43.3 23 0.0008 15.7 4.5 47 27-80 10-57 (59)
251 1nzn_A CGI-135 protein, fissio 42.3 36 0.0012 17.7 6.6 69 8-80 33-106 (126)
252 1dce_A Protein (RAB geranylger 41.7 71 0.0024 20.8 8.5 63 10-75 63-138 (567)
253 4aez_C MAD3, mitotic spindle c 40.4 53 0.0018 19.0 5.5 53 27-80 131-184 (223)
254 1rw2_A ATP-dependent DNA helic 39.6 7.1 0.00024 21.1 0.2 50 25-78 73-126 (152)
255 2xig_A Ferric uptake regulatio 39.0 43 0.0015 17.6 4.7 21 54-74 34-54 (150)
256 2fe3_A Peroxide operon regulat 38.7 43 0.0015 17.4 4.7 11 64-74 39-49 (145)
257 3hfh_A Transcription elongatio 38.4 25 0.00086 19.4 2.4 29 27-56 5-33 (190)
258 1mzb_A Ferric uptake regulatio 38.2 42 0.0014 17.2 4.5 25 15-39 22-47 (136)
259 4b8b_A General negative regula 38.0 81 0.0028 21.2 4.8 63 17-80 456-527 (603)
260 4ewi_A Nacht, LRR and PYD doma 37.0 18 0.00063 18.4 1.5 23 50-72 59-81 (113)
261 2crb_A Nuclear receptor bindin 36.0 43 0.0015 16.6 4.0 26 11-36 16-41 (97)
262 3eiq_C Programmed cell death p 35.5 79 0.0027 19.6 7.5 67 12-80 219-287 (358)
263 2npu_A FKBP12-rapamycin comple 35.1 50 0.0017 17.2 5.0 56 19-76 49-104 (126)
264 3o48_A Mitochondria fission 1 35.1 52 0.0018 17.4 5.0 55 24-81 57-111 (134)
265 2hm2_Q ASC2, pyrin-only protei 35.1 21 0.00073 17.1 1.5 26 49-74 53-78 (89)
266 3esl_A Checkpoint serine/threo 35.1 63 0.0022 18.3 9.6 57 23-80 92-149 (202)
267 2cwo_A P21, RNA silencing supp 34.2 36 0.0012 18.1 2.4 17 10-26 123-139 (197)
268 2w57_A Ferric uptake regulatio 33.6 55 0.0019 17.2 4.0 25 15-39 21-46 (150)
269 2uy1_A Cleavage stimulation fa 32.9 95 0.0033 19.7 7.4 15 25-39 335-349 (493)
270 1ug3_A EIF4GI, eukaryotic prot 32.4 32 0.0011 20.8 2.3 64 13-78 14-78 (339)
271 1y8m_A FIS1; mitochondria, unk 32.3 61 0.0021 17.3 6.3 55 24-81 56-110 (144)
272 2pk8_A Uncharacterized protein 31.8 52 0.0018 16.3 2.8 18 65-82 22-39 (103)
273 1bpo_A Protein (clathrin); cla 31.6 1E+02 0.0035 20.2 4.4 34 5-38 356-389 (494)
274 2km6_A Nacht, LRR and PYD doma 30.7 14 0.00048 18.6 0.5 27 49-75 57-83 (106)
275 3eyy_A Putative iron uptake re 29.9 64 0.0022 16.8 4.0 23 16-39 24-46 (145)
276 3f3f_C Nucleoporin NUP85; stru 29.8 47 0.0016 22.1 2.8 62 13-75 482-545 (570)
277 2p1h_A APAF-1, apoptotic prote 29.7 51 0.0018 15.6 4.9 35 24-63 50-84 (94)
278 3dra_A Protein farnesyltransfe 28.8 96 0.0033 18.5 8.7 63 9-73 143-213 (306)
279 2e2a_A Protein (enzyme IIA); h 28.3 63 0.0022 16.2 2.7 20 20-39 30-49 (105)
280 2zu6_B Programmed cell death p 28.1 1E+02 0.0035 18.6 6.0 66 12-79 168-235 (307)
281 1zbp_A Hypothetical protein VP 28.0 1E+02 0.0034 18.4 6.1 32 7-38 28-59 (273)
282 3qf2_A Nacht, LRR and PYD doma 27.3 24 0.00083 17.8 1.0 24 50-73 54-77 (110)
283 1wcr_A PTS system, N, N'-diace 27.3 66 0.0022 16.1 2.7 20 20-39 28-47 (103)
284 2ijq_A Hypothetical protein; s 27.2 82 0.0028 17.1 7.9 60 13-74 36-103 (161)
285 3bqo_A Telomeric repeat-bindin 26.2 97 0.0033 17.7 3.3 45 26-73 94-144 (211)
286 3dss_A Geranylgeranyl transfer 25.7 1.2E+02 0.004 18.4 9.2 65 8-75 106-174 (331)
287 3fap_B FRAP, FKBP12-rapamycin 24.6 72 0.0025 15.6 4.4 54 20-75 20-73 (94)
288 2qx5_A Nucleoporin NIC96; mRNA 24.6 1.3E+02 0.0043 20.5 4.1 45 13-59 155-199 (661)
289 3qwl_A TBC1 domain family memb 24.2 91 0.0031 18.6 3.2 12 67-78 188-199 (294)
290 1jog_A Hypothetical protein HI 24.0 89 0.003 16.5 3.4 27 46-73 77-103 (146)
291 2f6m_A Suppressor protein STP2 23.9 64 0.0022 14.7 3.1 45 12-58 4-48 (65)
292 3t5v_B Nuclear mRNA export pro 23.7 86 0.003 20.1 3.2 29 11-39 177-205 (455)
293 3u64_A Protein TP_0956; tetrat 23.5 1.3E+02 0.0045 18.2 6.7 63 10-75 154-233 (301)
294 2r9g_A AAA ATPase, central reg 22.8 1.2E+02 0.004 17.4 6.5 47 13-61 14-63 (204)
295 2kz2_A Calmodulin, CAM; TR2C, 22.0 73 0.0025 14.8 6.0 54 21-74 23-76 (94)
296 3bqs_A Uncharacterized protein 22.0 82 0.0028 15.3 3.1 21 65-85 36-56 (93)
297 3i3l_A Alkylhalidase CMLS; fla 21.9 1.8E+02 0.0061 19.2 4.5 46 25-76 517-562 (591)
298 1wxp_A THO complex subunit 1; 21.8 86 0.003 15.5 3.4 44 27-73 58-101 (110)
299 3l6a_A Eukaryotic translation 21.8 1.5E+02 0.0051 18.3 7.6 63 11-78 13-80 (364)
300 1x87_A Urocanase protein; stru 21.8 43 0.0015 22.0 1.5 21 63-83 237-257 (551)
301 1wty_A Hypothetical protein TT 21.5 72 0.0025 16.0 2.2 27 46-73 53-79 (119)
302 3no5_A Uncharacterized protein 21.2 33 0.0011 20.4 0.9 25 61-85 123-147 (275)
303 2fkn_A Urocanate hydratase; ro 20.9 43 0.0015 22.0 1.4 21 63-83 238-258 (552)
304 2fu4_A Ferric uptake regulatio 20.9 74 0.0025 14.4 3.9 7 30-36 37-43 (83)
305 2y7e_A 3-keto-5-aminohexanoate 20.8 36 0.0012 20.3 1.0 26 60-85 127-152 (282)
306 3l8r_A PTCA, putative PTS syst 20.7 1E+02 0.0035 15.9 2.7 18 21-38 48-65 (120)
307 1ucp_A Pycard, ASC, apoptosis- 20.5 18 0.0006 17.5 -0.3 21 53-73 57-77 (91)
308 3mkq_B Coatomer subunit alpha; 20.1 1.2E+02 0.0042 16.7 7.5 63 9-71 33-114 (177)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.93 E-value=1.4e-25 Score=140.74 Aligned_cols=90 Identities=19% Similarity=0.298 Sum_probs=84.5
Q ss_pred CCCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcC
Q 038287 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPD 80 (91)
Q Consensus 1 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 80 (91)
|+.+|+.||..|||++|.+|++.|++++|.++|++|.+. |+.||..||+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 96 M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd 174 (501)
T 4g26_A 96 MIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF-GIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE 174 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Confidence 456789999999999999999999999999999999887 9999999999999999999999999999999999999999
Q ss_pred HHhHhhhhhcC
Q 038287 81 CFVYNTIMKGY 91 (91)
Q Consensus 81 ~~~~~~ll~~~ 91 (91)
..||++||++|
T Consensus 175 ~~ty~~Li~~~ 185 (501)
T 4g26_A 175 EPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 2
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.89 E-value=7.4e-24 Score=140.04 Aligned_cols=86 Identities=13% Similarity=0.254 Sum_probs=72.1
Q ss_pred CCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCC-HHHHHHHHHHHHhCCCCcCHH
Q 038287 4 KQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN-LREAMRLVSALSDSGFKPDCF 82 (91)
Q Consensus 4 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~ 82 (91)
+|+.||.+|||+||++||+.|++++|.++|++|.+. |+.||.+|||++|+++|+.|. .+.|.++|++|.+.|+.||.+
T Consensus 159 kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~v 237 (1134)
T 3spa_A 159 KRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237 (1134)
T ss_dssp HHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHH
T ss_pred cCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChh
Confidence 467788888888888888888888888888888876 888888888888888888887 467888888888888888888
Q ss_pred hHhhhhhc
Q 038287 83 VYNTIMKG 90 (91)
Q Consensus 83 ~~~~ll~~ 90 (91)
||++++++
T Consensus 238 tY~~ll~~ 245 (1134)
T 3spa_A 238 FTAVLLSE 245 (1134)
T ss_dssp HHHSCCCH
T ss_pred hcccccCh
Confidence 88877654
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.89 E-value=2.8e-23 Score=130.34 Aligned_cols=90 Identities=16% Similarity=0.205 Sum_probs=85.4
Q ss_pred CCCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcC
Q 038287 1 LIFKQLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPD 80 (91)
Q Consensus 1 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 80 (91)
|...|+.||..|||++|.+|++.|++++|.++|++|.+. |+.||..||+++|++|++.|++++|.+++++|++.|..|+
T Consensus 131 M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps 209 (501)
T 4g26_A 131 MKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS 209 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred HHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence 456789999999999999999999999999999999987 9999999999999999999999999999999999999999
Q ss_pred HHhHhhhhhcC
Q 038287 81 CFVYNTIMKGY 91 (91)
Q Consensus 81 ~~~~~~ll~~~ 91 (91)
..||+.++..|
T Consensus 210 ~~T~~~l~~~F 220 (501)
T 4g26_A 210 KSTFDMIEEWF 220 (501)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988653
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.87 E-value=4.4e-22 Score=131.73 Aligned_cols=83 Identities=13% Similarity=0.180 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhh--CCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcCHHhHhh
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRAS--LGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNT 86 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 86 (91)
-..|||+||++||++|++++|.++|+.|.+. .|+.||.+|||++|++||+.|.+++|.++|++|...|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 3579999999999999999999999887631 27999999999999999999999999999999999999999999999
Q ss_pred hhhcC
Q 038287 87 IMKGY 91 (91)
Q Consensus 87 ll~~~ 91 (91)
||++|
T Consensus 206 LI~gl 210 (1134)
T 3spa_A 206 ALQCM 210 (1134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99864
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.70 E-value=1.4e-07 Score=59.44 Aligned_cols=79 Identities=9% Similarity=-0.000 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCcC--HH
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS----GFKPD--CF 82 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~----g~~p~--~~ 82 (91)
+..+|+.+..+|.+.|++++|.++|+.+.+. . ..+..+|+.+...+.+.|++++|.++|+++.+. +..|+ ..
T Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~ 517 (597)
T 2xpi_A 440 THLPYLFLGMQHMQLGNILLANEYLQSSYAL-F-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA 517 (597)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHH
Confidence 4556666666666667777777777666553 1 224666777777777777777777777777543 55666 45
Q ss_pred hHhhhhh
Q 038287 83 VYNTIMK 89 (91)
Q Consensus 83 ~~~~ll~ 89 (91)
+|..+..
T Consensus 518 ~~~~l~~ 524 (597)
T 2xpi_A 518 TWANLGH 524 (597)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655544
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.70 E-value=7.7e-08 Score=60.60 Aligned_cols=79 Identities=8% Similarity=-0.112 Sum_probs=68.7
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcCHHhHhhh
Q 038287 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTI 87 (91)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 87 (91)
++...|+.++..|.+.|++++|..+|+.+... .|+..++..+..+|.+.|++++|.++++++.. ..++..+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l 156 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLA 156 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHH
Confidence 57788999999999999999999999999854 67889999999999999999999999998853 35778888877
Q ss_pred hhcC
Q 038287 88 MKGY 91 (91)
Q Consensus 88 l~~~ 91 (91)
+.+|
T Consensus 157 ~~~~ 160 (597)
T 2xpi_A 157 AFCL 160 (597)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.73 E-value=0.00057 Score=41.02 Aligned_cols=60 Identities=10% Similarity=-0.004 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
.++..+...|.+.|++++|...|+.+.+. .| +..+|..+..++.+.|++++|.+.++++.
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444445555555554444432 22 23344444444444444444444444443
No 8
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.72 E-value=0.00072 Score=33.34 Aligned_cols=64 Identities=16% Similarity=0.110 Sum_probs=55.0
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
-+...+..+-..|.+.|++++|...|+...+. .| +...|..+-.++.+.|+.++|.+.+++...
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVET---DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35667888889999999999999999998865 44 466789999999999999999999988864
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.69 E-value=0.00089 Score=40.18 Aligned_cols=62 Identities=16% Similarity=0.060 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
..+|..+...+.+.|++++|...|+.+.+. ...+..+|..+...+.+.|++++|.+.++++.
T Consensus 271 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 332 (388)
T 1w3b_A 271 PDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332 (388)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555556666666666666666665543 12244555555555666666666666555554
No 10
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.66 E-value=0.001 Score=33.33 Aligned_cols=65 Identities=8% Similarity=0.013 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
+...+..+...+...|++++|...++..... . ..+...+..+...+.+.|++++|.+.++++...
T Consensus 34 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 98 (136)
T 2fo7_A 34 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 98 (136)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4566777777788888888888888887654 1 224566777788888888888888888887653
No 11
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.64 E-value=0.0013 Score=36.98 Aligned_cols=63 Identities=13% Similarity=-0.084 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
...+..+...|.+.|++++|...++..... . ..+...+..+...+...|++++|.+.+++...
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALAS-D-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-C-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 344455555555555555555555555432 1 11344455555555555555555555555544
No 12
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.64 E-value=0.0011 Score=32.94 Aligned_cols=60 Identities=10% Similarity=0.050 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
.+..+...+.+.|++++|...|+..... . ..+...+..+...+.+.|+.++|...++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 70 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-C-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3444444444555555555555544432 0 1123344444444445555555555444443
No 13
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.63 E-value=9.2e-05 Score=46.51 Aligned_cols=67 Identities=4% Similarity=0.014 Sum_probs=30.2
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcCHHhHhhh
Q 038287 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTI 87 (91)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 87 (91)
|+..+|+.+-..|...|.+++|..+|..+ ..|..+..++.+.|+.++|.+.++++ -+..+|..+
T Consensus 120 pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v 183 (449)
T 1b89_A 120 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 183 (449)
T ss_dssp C----------------CTTTHHHHHHHT----------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHH
Confidence 44456666666666666666666666654 24666666666666666666666665 245555555
Q ss_pred hhc
Q 038287 88 MKG 90 (91)
Q Consensus 88 l~~ 90 (91)
+.+
T Consensus 184 ~~a 186 (449)
T 1b89_A 184 CFA 186 (449)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 14
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.59 E-value=0.0017 Score=34.77 Aligned_cols=60 Identities=8% Similarity=-0.097 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
.+..+-..+.+.|++++|...|+..... .| +...|..+-.++.+.|+.++|.+.|++...
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~ 98 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 3444445555666666666666665543 33 345555555666666666666666666543
No 15
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.57 E-value=0.00095 Score=33.66 Aligned_cols=64 Identities=8% Similarity=-0.052 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
+...+..+-..|.+.|++++|...|+...+. .| +...+..+-.++.+.|+.++|.+.+++....
T Consensus 26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQ---FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456778888999999999999999998865 44 4777888999999999999999999988753
No 16
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.57 E-value=0.00098 Score=40.55 Aligned_cols=64 Identities=13% Similarity=0.009 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
+...+..+...+.+.|++++|..+|+.+... ...+...|..+..++.+.|+.++|.+.++++.+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3445566666666666666666666666543 112455566666666666666666666666654
No 17
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.56 E-value=0.0014 Score=32.47 Aligned_cols=66 Identities=9% Similarity=0.032 Sum_probs=56.1
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
.+...+..+...+.+.|++++|...|+..... . ..+...+..+...+.+.|++++|.+.+++....
T Consensus 41 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 41 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-C-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 35667888899999999999999999998864 1 235778889999999999999999999998754
No 18
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.55 E-value=0.0022 Score=34.47 Aligned_cols=71 Identities=11% Similarity=-0.018 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcCHHhH
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVY 84 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 84 (91)
+...+..+-..|.+.|++++|...|+...+. .| +...|..+-.++.+.|+.++|.+.|++..+. .|+..-|
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~a~~ 177 (184)
T 3vtx_A 106 YADAYYKLGLVYDSMGEHDKAIEAYEKTISI---KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK--EEKKAKY 177 (184)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--THHHHHH
T ss_pred chHHHHHHHHHHHHhCCchhHHHHHHHHHHh---cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC--CccCHHH
Confidence 4566778888889999999999999988764 44 5778889999999999999999999988753 4554444
No 19
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.54 E-value=0.0016 Score=32.57 Aligned_cols=61 Identities=8% Similarity=0.012 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
..+..+...+.+.|++++|...++.+... . ..+...+..+...+.+.|+.++|.+.++++.
T Consensus 70 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 70 EAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 34444445555555555555555554432 1 1123444445555555555555555555443
No 20
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.0034 Score=38.63 Aligned_cols=66 Identities=21% Similarity=0.171 Sum_probs=52.9
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 038287 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDSG 76 (91)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g 76 (91)
|+...+..+..+|.+.|++++|...++...+. .| +...|..+..++.+.|+.++|.+.|+++...+
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 103 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALEL---KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG 103 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc---ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 67778888888888888888888888888764 34 45678888888888888888888888887654
No 21
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.43 E-value=0.0032 Score=33.86 Aligned_cols=64 Identities=9% Similarity=-0.023 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
+...|..+=..|.+.|++++|...|+...+. .| +...|..+-.++.+.|++++|.+.+......
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~ 68 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA---DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL 68 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4567888888888999999999999988764 45 5777888888899999999999888887643
No 22
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.43 E-value=0.0024 Score=31.93 Aligned_cols=67 Identities=3% Similarity=0.025 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhC-CCCcc----HHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL-GIKPN----LVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
+...+..+-..|...|++++|...++...... ...++ ...+..+..++.+.|++++|.+.+++....
T Consensus 37 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 37 NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45566677777778888888888887766530 00111 566777777788888888888888777653
No 23
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.42 E-value=0.0031 Score=38.38 Aligned_cols=65 Identities=9% Similarity=-0.076 Sum_probs=57.7
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
.+...+..+..+|.+.|++++|...|+.+.+. .| +...+..+..++.+.|++++|.+.++++...
T Consensus 58 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 123 (450)
T 2y4t_A 58 DNYIAYYRRATVFLAMGKSKAALPDLTKVIQL---KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 123 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 46778999999999999999999999999875 34 4778999999999999999999999999764
No 24
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.42 E-value=0.0022 Score=31.21 Aligned_cols=61 Identities=8% Similarity=0.035 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
.+..+-..+.+.|++++|...|+...+. . ..+...|..+-.++.+.|++++|.+.+++...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 68 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL-D-PEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH-C-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh-C-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444445555556666666666555443 1 11344455555555556666666666655544
No 25
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.41 E-value=0.0021 Score=35.91 Aligned_cols=67 Identities=9% Similarity=-0.033 Sum_probs=55.9
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 6 LPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
||++...+..+-..+.+.|++++|...|+...+. .| +...|..+-..+.+.|+.++|.+.+++....
T Consensus 1 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 68 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKE---NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR 68 (217)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567778888888999999999999999998753 56 5778888999999999999999999998754
No 26
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.40 E-value=0.0042 Score=34.00 Aligned_cols=62 Identities=6% Similarity=-0.078 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHcc-CCHHHHHHHHHHHHh
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT-KNLREAMRLVSALSD 74 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~m~~ 74 (91)
..+..+...|...|++++|...++..... . ..+...+..+...+... |++++|.+.+++...
T Consensus 43 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 43 LAWLVRAEIYQYLKVNDKAQESFRQALSI-K-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh-C-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 34444445555555555555555554432 0 11344445555555555 555555555555544
No 27
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.0026 Score=31.18 Aligned_cols=64 Identities=14% Similarity=0.069 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
+...+..+-..+.+.|++++|...|+..... .| +...|..+-.++.+.|++++|.+.+++....
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA---QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4556777888899999999999999998764 44 5778889999999999999999999998754
No 28
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.35 E-value=0.0031 Score=31.47 Aligned_cols=64 Identities=9% Similarity=0.006 Sum_probs=54.9
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
.+...+..+-..|.+.|++++|...|+..... .| +...|..+-.++.+.|+.++|.+.+++...
T Consensus 17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDF---DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35677888889999999999999999998864 44 467888899999999999999999998864
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.34 E-value=0.003 Score=36.58 Aligned_cols=60 Identities=10% Similarity=0.008 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
..+..+...+.+.|++++|...|+...+. .| +...|..+...+.+.|++++|.+.+++..
T Consensus 207 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 207 QLWNKLGATLANGNRPQEALDAYNRALDI---NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444555555555555555555554432 22 24445555555555555555555555544
No 30
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.33 E-value=0.0044 Score=32.77 Aligned_cols=61 Identities=13% Similarity=0.037 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
..+..+...+...|++++|...++...+. ...+...+..+...+...|++++|.+.+++..
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 103 (186)
T 3as5_A 43 DVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQKYDLAVPLLIKVA 103 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33444444444444444444444444332 01123334444444444444444444444443
No 31
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.33 E-value=0.004 Score=32.36 Aligned_cols=59 Identities=7% Similarity=-0.157 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
+..+-..+.+.|++++|...|+..... .| +...|..+-.++.+.|+.++|.+.+++...
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 80 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 333444455555666666665555443 23 344455555555555555555555555543
No 32
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.33 E-value=0.0047 Score=33.03 Aligned_cols=64 Identities=6% Similarity=-0.164 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
+...|..+=.+|.+.|++++|...|+..... .| +...|..+-.++.+.|+.++|.+.|++....
T Consensus 69 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l---~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 69 NVDYIMGLAAIYQIKEQFQQAADLYAVAFAL---GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5677888889999999999999999999864 55 4678889999999999999999999999764
No 33
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.32 E-value=0.0046 Score=36.69 Aligned_cols=62 Identities=16% Similarity=0.141 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
+...|..+-..|.+.|++++|...|+..... .| +...|..+..++.+.|+.++|.+.++++.
T Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 160 (365)
T 4eqf_A 98 DAEAWQFLGITQAENENEQAAIVALQRCLEL---QPNNLKALMALAVSYTNTSHQQDACEALKNWI 160 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 3445555555566666666666666655543 22 34555556666666666666666665554
No 34
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.32 E-value=0.0045 Score=32.70 Aligned_cols=58 Identities=7% Similarity=-0.152 Sum_probs=26.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
+..+-..+.+.|++++|...|+..... .| +...|..+-.++.+.|++++|.+.+++..
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 82 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA 82 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333344444445555555555544432 22 33344444444444455555554444443
No 35
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.32 E-value=0.0031 Score=37.47 Aligned_cols=63 Identities=11% Similarity=0.044 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
+..++..+-..|.+.|++++|...|+...+. .| +..+|..+..++.+.|+.++|.+.+++...
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 275 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALE 275 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555555555555555555555555443 22 344555555555555555555555555543
No 36
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.31 E-value=2.3e-05 Score=49.15 Aligned_cols=56 Identities=9% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
.+|+.|..++.+.+++++|+..|.+. +|..+|..+..++...|.+++|.+.++..+
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 46666666666666666666666432 344456666666666666666666444443
No 37
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.30 E-value=0.0055 Score=34.66 Aligned_cols=59 Identities=12% Similarity=-0.079 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
++..+-..+...|++++|...|+..... .| +...|..+...+.+.|++++|.+.+++..
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 104 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAI---RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL 104 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3444444444445555555544444432 12 23444444444444444444444444443
No 38
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.28 E-value=0.0061 Score=33.33 Aligned_cols=62 Identities=11% Similarity=-0.046 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhc-CChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 11 FTYNFLVKCLCKC-RSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 11 ~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
.++..+...+... |++++|...++..... ...| +...+..+..++.+.|++++|.+.+++..
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 77 EINNNYGWFLCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444 5555555555444431 1122 13344444444444455555544444443
No 39
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.27 E-value=0.0046 Score=31.78 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
+...|..+-.+|.+.|++++|+..|+...+. .| +...|..+-.++...|++++|.+.|++..+
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 46 NAILYSNRAACLTKLMEFQRALDDCDTCIRL---DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445555556666666666666666655542 23 344555566666666666666666665543
No 40
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.0038 Score=38.43 Aligned_cols=62 Identities=8% Similarity=0.094 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
..+-..-..+.+.|++++|...|+.+... .|+...|..+..++.+.|++++|.+.++++.+.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 68 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALEL 68 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 34556667888999999999999999876 589999999999999999999999999999764
No 41
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.27 E-value=0.0042 Score=31.20 Aligned_cols=62 Identities=5% Similarity=-0.051 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
...+..+-..+.+.+++++|...|+..... .| +...+..+..++.+.|++++|.+.+++...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 78 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR---NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ 78 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT---CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344555555556666666666666655432 22 344555555555566666666666655543
No 42
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.25 E-value=0.004 Score=36.56 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRA 38 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 38 (91)
...+..+...|.+.|++++|...|+.+..
T Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 130 LECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33444444445555555555555555443
No 43
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.23 E-value=0.0026 Score=37.37 Aligned_cols=50 Identities=10% Similarity=0.079 Sum_probs=26.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 18 KCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
..+.+.|++++|...++. ..+...+..+...+.+.|++++|.+.++++..
T Consensus 109 ~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 109 SIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 444444555555544443 12344555555566666666666666666654
No 44
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.20 E-value=0.0037 Score=34.94 Aligned_cols=62 Identities=10% Similarity=-0.150 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
...+..+=..+...|++++|...|+...+. . .+...+..+-.++...|+.++|.+.+++..+
T Consensus 118 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 179 (217)
T 2pl2_A 118 APLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALE 179 (217)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555556666666666666666666554 2 4555566666666666666666666666654
No 45
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.19 E-value=0.0053 Score=32.39 Aligned_cols=60 Identities=7% Similarity=-0.034 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
.+-.+-..|.+.|++++|...|+...+. .| +...|..+-.++.+.|++++|.+.|++..+
T Consensus 33 ~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 93 (150)
T 4ga2_A 33 KGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENTDKAVECYRRSVE 93 (150)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 3445566777888888888888877654 45 466777788888888888888888877764
No 46
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.18 E-value=0.0059 Score=31.27 Aligned_cols=63 Identities=11% Similarity=-0.053 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCcc----HHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPN----LVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
+...+..+-..+.+.|++++|...|+..... .|+ ...|..+..++.+.|++++|.+.+++...
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 93 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE 93 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 4455666667777777777777777777642 454 56667777777777777777777777654
No 47
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.16 E-value=0.0073 Score=31.88 Aligned_cols=64 Identities=9% Similarity=-0.030 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
+...+..+...+...|++++|...++..... ...+...+..+...+.+.|++++|.+.+++...
T Consensus 75 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 138 (186)
T 3as5_A 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALG 138 (186)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence 3445555666666666666666666666543 122445556666666666666666666666553
No 48
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.16 E-value=0.0074 Score=31.98 Aligned_cols=60 Identities=5% Similarity=-0.093 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
..|..+-.+|.+.|++++|...|+..... .| +...|..+-.++.+.|+.++|.+.+++..
T Consensus 46 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 46 IYLSNRAAAYSASGQHEKAAEDAELATVV---DPKYSKAWSRLGLARFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33444444444445555555555444432 22 23444444444445555555555444443
No 49
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.16 E-value=0.0055 Score=31.20 Aligned_cols=59 Identities=8% Similarity=-0.102 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
+..+-..+.+.|++++|...|+...+. .| +...|..+-.++.+.|+.++|.+.+++...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 79 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444455666777888888877777654 44 466677777777777788888777777754
No 50
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.0059 Score=30.82 Aligned_cols=63 Identities=16% Similarity=0.122 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
+...|..+-.+|.+.|++++|...|+...+. .| +...|..+-.++...|+.++|.+.+++...
T Consensus 37 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 37 DARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPNFVRAYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 4455666666666777777777777766543 33 355566666667777777777776666653
No 51
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.13 E-value=0.0052 Score=29.79 Aligned_cols=64 Identities=9% Similarity=-0.073 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc---cHHhHHHHHHHHHcc-CCHHHHHHHHHHHHhC
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP---NLVTYTILIDNVCNT-KNLREAMRLVSALSDS 75 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~a~~~~~~m~~~ 75 (91)
+...+..+-..+.+.|++++|...|+...+. .| +...+..+..++.+. |+.++|.+.+++....
T Consensus 39 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 39 ESKYWLMKGKALYNLERYEEAVDCYNYVINV---IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 5567888888999999999999999998864 34 477899999999999 9999999999999754
No 52
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.13 E-value=0.0078 Score=31.74 Aligned_cols=64 Identities=9% Similarity=-0.156 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
+...|..+-.+|.+.|++++|...|+..... .| +...+..+-.++...|+.++|.+.+++....
T Consensus 54 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 54 DSRFFLGLGACRQAMGQYDLAIHSYSYGAVM---DIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5667888888999999999999999998764 45 4677888889999999999999999998753
No 53
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.12 E-value=0.012 Score=33.96 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
+...+..+...|.+.|++++|...++..... .| +...|..+...+.+.|++++|.+.+++..+.
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5677888899999999999999999998865 34 5778999999999999999999999998754
No 54
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.11 E-value=0.0084 Score=31.77 Aligned_cols=64 Identities=6% Similarity=-0.054 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
+...+..+-..+.+.|++++|...|+..... .| +...|..+-.++.+.|++++|.+.+++....
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 74 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVV 74 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4566788888999999999999999998864 45 6778999999999999999999999998754
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.11 E-value=0.0088 Score=33.81 Aligned_cols=65 Identities=12% Similarity=-0.001 Sum_probs=57.1
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
.+...+..+-..|.+.|++++|...|+..... .| +...+..+...+.+.|+.++|.+.+++....
T Consensus 75 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 75 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 35678889999999999999999999999874 34 5778999999999999999999999999763
No 56
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.011 Score=32.94 Aligned_cols=59 Identities=8% Similarity=-0.030 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
+..+-..+...|++++|...|+..... . ..+...|..+..++.+.|++++|.+.+++..
T Consensus 142 ~~~~~~~~~~~~~~~~A~~~~~~a~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 142 ARLEGKEYFTKSDWPNAVKAYTEMIKR-A-PEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444444444445555555555544432 0 1123444444444444455555544444443
No 57
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.09 E-value=0.013 Score=34.56 Aligned_cols=63 Identities=13% Similarity=0.111 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
+...+..+-..|.+.|++++|...|+..... .| +..++..+...+...|+.++|.+.++++..
T Consensus 97 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 97 HMEAWQYLGTTQAENEQELLAISALRRCLEL---KPDNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445566666666666666666666666543 22 455666666666666666666666666654
No 58
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.05 E-value=0.012 Score=34.68 Aligned_cols=62 Identities=10% Similarity=0.002 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
..++..+-..|.+.|++++|...|+..... .| +...|..+...+.+.|++++|.+.+++...
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 279 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALE 279 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666666666666666666665543 23 345566666666666666666666666543
No 59
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.03 E-value=0.008 Score=30.12 Aligned_cols=64 Identities=17% Similarity=0.156 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
+...+..+-..+...+++++|...++..... .| +...+..+..++.+.|++++|.+.+++....
T Consensus 49 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 49 DAKLYSNRAACYTKLLEFQLALKDCEECIQL---EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 5677888888999999999999999998764 34 5778888999999999999999999998753
No 60
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.01 E-value=0.0063 Score=28.61 Aligned_cols=63 Identities=11% Similarity=0.076 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
...+..+-..+.+.+++++|...|+..... .| +...+..+-.++.+.|+.++|.+.+++....
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 456777778889999999999999998764 34 5677888999999999999999999998753
No 61
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.00 E-value=0.0076 Score=29.42 Aligned_cols=64 Identities=14% Similarity=-0.006 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
+...+..+-..+.+.|++++|...++..... .| +...+..+..++.+.|+.++|.+.+++....
T Consensus 37 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 37 NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL---KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhccHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 4556667777777788888888888877654 33 4566777777888888888888888777643
No 62
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.00 E-value=0.014 Score=32.63 Aligned_cols=63 Identities=5% Similarity=-0.005 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
+...+..+...+.+.|++++|...|+..... .| +...+..+...+.+.|+.++|.+.+++...
T Consensus 140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 203 (252)
T 2ho1_A 140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQ 203 (252)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666777777778888888888777654 23 466677777777777888888777777764
No 63
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.00 E-value=0.013 Score=32.04 Aligned_cols=67 Identities=10% Similarity=-0.093 Sum_probs=56.2
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
.|+...+..+-..|.+.|++++|...|+..... . ..+...|..+-.++.+.|+.++|.+.+++....
T Consensus 34 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 34 DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR-D-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 467778888899999999999999999988764 1 235678888999999999999999999998764
No 64
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.014 Score=32.52 Aligned_cols=62 Identities=5% Similarity=-0.034 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
...+..+-..+.+.|++++|...|+...+. . .+...|..+..++.+.|++++|.+.+++...
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 66 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL-H--KDITYLNNRAAAEYEKGEYETAISTLNDAVE 66 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-h--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 356777888899999999999999999886 4 7788899999999999999999999999875
No 65
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.99 E-value=0.0095 Score=30.25 Aligned_cols=63 Identities=11% Similarity=-0.048 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
+...+..+-..+.+.|++++|...|+..... .| +...|..+-.++.+.|++++|.+.+++...
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 71 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALE 71 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4455555566666666666666666665543 23 345566666666666666666666666554
No 66
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.98 E-value=0.008 Score=29.33 Aligned_cols=63 Identities=10% Similarity=-0.006 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
...+..+-..+...|++++|...|+..... .| +...+..+...+.+.|+.++|.+.+++....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 67 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 456777888889999999999999998764 34 5777888889999999999999999998754
No 67
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.98 E-value=0.0087 Score=29.72 Aligned_cols=62 Identities=8% Similarity=-0.009 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
...+..+-..+...|++++|...++..... .| +...+..+...+.+.|+.++|.+.+++...
T Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 46 AVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 344555555555566666666666655543 22 244555555556666666666666655543
No 68
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.0094 Score=30.05 Aligned_cols=63 Identities=10% Similarity=0.003 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
...+..+-..+.+.|++++|...|+..... .| +...|..+-.++.+.|++++|.+.+++....
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 67 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 67 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345667777889999999999999998764 44 5788999999999999999999999998754
No 69
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.96 E-value=0.01 Score=30.16 Aligned_cols=63 Identities=10% Similarity=-0.013 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
+...|..+-.++...|++++|...++..... .| +...|..+-.++...|+.++|.+.+++...
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 42 VAVYYTNRALCYLKMQQPEQALADCRRALEL---DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4667888889999999999999999998864 34 577889999999999999999999998864
No 70
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.95 E-value=0.015 Score=32.16 Aligned_cols=58 Identities=14% Similarity=0.107 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 038287 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSAL 72 (91)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m 72 (91)
+..+...+.+.|++++|...|+..... . ..+...+..+...+.+.|++++|.+.+++.
T Consensus 60 ~~~la~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 117 (243)
T 2q7f_A 60 YINFANLLSSVNELERALAFYDKALEL-D-SSAATAYYGAGNVYVVKEMYKEAKDMFEKA 117 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-C-CcchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 333334444444444444444443322 0 112333333344444444444444444433
No 71
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.93 E-value=0.01 Score=29.79 Aligned_cols=62 Identities=10% Similarity=0.012 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCcc----HHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPN----LVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
..+..+-.++.+.|++++|...|+..... .|+ ...+..+-.++.+.|+.++|.+.+++....
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSR---YPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35666677888899999999999988765 343 456777788888999999999999888754
No 72
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.93 E-value=0.012 Score=36.86 Aligned_cols=64 Identities=5% Similarity=-0.061 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhh----CC-CCcc-HHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRAS----LG-IKPN-LVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
..+++.|...|...|++++|..++++.... +| -.|+ ..+++.+-..|...|+.++|..++++..
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 467999999999999999999999987642 23 2443 6779999999999999999999998875
No 73
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.92 E-value=0.012 Score=30.47 Aligned_cols=64 Identities=8% Similarity=-0.194 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
+...|..+-.+|.+.|++++|...|+..... .| +...+..+-.++...|+.++|.+.+++....
T Consensus 51 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 51 DARYFLGLGACRQSLGLYEQALQSYSYGALM---DINEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5667888888999999999999999998864 44 4667888889999999999999999988753
No 74
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.92 E-value=0.011 Score=31.71 Aligned_cols=45 Identities=18% Similarity=0.105 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 28 TVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 28 ~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
++...++..... .| +...+..+-..+.+.|+.++|.+.+++..+.
T Consensus 92 ~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 137 (176)
T 2r5s_A 92 PELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKV 137 (176)
T ss_dssp HHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 345555555433 34 3455555566666666666666666665543
No 75
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=96.90 E-value=0.029 Score=35.30 Aligned_cols=74 Identities=11% Similarity=0.148 Sum_probs=59.9
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcCHHhHhh
Q 038287 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNT 86 (91)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 86 (91)
-+...|..++. +.+.|++++|..+|+.+.+. .| +...|...+..+.+.|+.++|.++|++.+.. .|+...|..
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~---~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~ 84 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ---FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKC 84 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHH
Confidence 36678988888 47889999999999999864 55 5667999999999999999999999999765 366655543
Q ss_pred h
Q 038287 87 I 87 (91)
Q Consensus 87 l 87 (91)
.
T Consensus 85 ~ 85 (530)
T 2ooe_A 85 Y 85 (530)
T ss_dssp H
T ss_pred H
Confidence 3
No 76
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.90 E-value=0.018 Score=31.93 Aligned_cols=65 Identities=8% Similarity=0.007 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
+...+..+...+...|++++|...++...+. . ..+...+..+...+.+.|+.++|.+.+++....
T Consensus 90 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 154 (243)
T 2q7f_A 90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRA-G-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL 154 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-T-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5667888888999999999999999998764 1 235677888889999999999999999998754
No 77
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.86 E-value=0.018 Score=31.88 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=50.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 16 LVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
+-..|.+.|++++|...|+...+. .| +...|..+-..+...|+.++|.+.+++....
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK---APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 778888999999999999998865 55 5778899999999999999999999998753
No 78
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.85 E-value=0.014 Score=29.92 Aligned_cols=62 Identities=10% Similarity=0.057 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCcc--------HHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPN--------LVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
...|+.+-.+|.+.|++++|+..++...+. .|+ ..+|..+-.++...|++++|.+.|++...
T Consensus 42 ~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 42 ITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555556666666666666666654431 111 12344444555556666666666665543
No 79
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.84 E-value=0.012 Score=29.17 Aligned_cols=64 Identities=11% Similarity=-0.004 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
+...+..+-..+...+++++|...|+..... .| +...+..+...+...|++++|.+.+++....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 75 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI 75 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc
Confidence 4566777888889999999999999998764 34 5778889999999999999999999998754
No 80
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.79 E-value=0.015 Score=29.72 Aligned_cols=61 Identities=13% Similarity=0.130 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
..+..+=..+.+.|++++|+..|+...+. .| +...|..+-.+|.+.|++++|++.+++...
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~---~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL---DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34555667788999999999999998764 55 577899999999999999999999998864
No 81
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.77 E-value=0.031 Score=34.44 Aligned_cols=68 Identities=13% Similarity=0.162 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCcCHHh
Q 038287 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD-----SGFKPDCFV 83 (91)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~ 83 (91)
...++..+...|+++++...++..... .| +...|-.+|.++.+.|+..+|.+.|++..+ .|+.|+..+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~---~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE---HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345567777889999999999888764 45 677899999999999999999999988753 499998765
No 82
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=96.76 E-value=0.021 Score=33.04 Aligned_cols=26 Identities=15% Similarity=-0.028 Sum_probs=11.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 48 TYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 48 ~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
.|..+..++.+.|+.++|.+.+++..
T Consensus 238 ~~~~la~~~~~~g~~~~A~~~~~~a~ 263 (330)
T 3hym_B 238 LLNNLGHVCRKLKKYAEALDYHRQAL 263 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44444444444444444444444443
No 83
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.72 E-value=0.018 Score=29.41 Aligned_cols=63 Identities=6% Similarity=-0.069 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
...+..+-..|.+.+++++|...++..... .| +...+..+-.++...|+.++|.+.+++....
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEK---DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhh---CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 566788888899999999999999998764 44 5677888889999999999999999998753
No 84
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=96.71 E-value=0.019 Score=33.67 Aligned_cols=64 Identities=8% Similarity=0.103 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCcc-HH-hHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPN-LV-TYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
+...|..+...+.+.|++++|..+|+...+ +.|+ .. .|..+...+.+.|++++|.++|++..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 98 NMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 455788888999999999999999999875 3554 32 7888888888899999999999988764
No 85
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.70 E-value=0.02 Score=29.81 Aligned_cols=63 Identities=8% Similarity=0.000 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
+...+..+-..+...|++++|...++..... .| +...|..+-.++.+.|+.++|.+.+++...
T Consensus 46 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 46 NAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASNMALGKFRAALRDYETVVK 109 (166)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455666667777777777777777776653 23 455667777777777777777777777754
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.70 E-value=0.027 Score=31.25 Aligned_cols=59 Identities=12% Similarity=-0.017 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
.+..+-.++.+.|++++|...|+..... .| +...|..+-..+.+.|+.++|.+.+++..
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 103 (228)
T 4i17_A 44 TAYNCGVCADNIKKYKEAADYFDIAIKK---NYNLANAYIGKSAAYRDMKNNQEYIATLTEGI 103 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHh---CcchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3333444444455555555555544432 22 23344444445555555555555554443
No 87
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=96.67 E-value=0.034 Score=32.43 Aligned_cols=64 Identities=11% Similarity=-0.060 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
+...+..+-..+...|++++|...|+...+. .| +...|..+...+.+.|+.++|.+.+++....
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 100 (359)
T 3ieg_A 36 NYIAYYRRATVFLAMGKSKAALPDLTKVIAL---KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 100 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 4556777777778888888888888887754 34 4567777888888888888888888877654
No 88
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.66 E-value=0.023 Score=35.52 Aligned_cols=64 Identities=8% Similarity=-0.033 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhh----CC-CCcc-HHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRAS----LG-IKPN-LVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
..+++.+...|...|++++|..++++...- +| -.|+ ..+++.+-..|...|+.++|..++++..
T Consensus 329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 467899999999999999999999976642 22 3443 6779999999999999999999888875
No 89
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.65 E-value=0.018 Score=28.57 Aligned_cols=64 Identities=11% Similarity=0.043 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
...+..+-..+...|++++|...|+..... . ..+...+..+...+.+.|++++|.+.+++....
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 67 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL-D-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 346777888899999999999999998764 1 235777888999999999999999999988753
No 90
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=96.63 E-value=0.035 Score=32.07 Aligned_cols=59 Identities=7% Similarity=-0.058 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
.+..+-..|...|++++|...++..... .| +...+..+...+.+.|++++|.+.+++..
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 161 PMLYIGLEYGLTNNSKLAERFFSQALSI---APEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3444555555556666666666655432 22 34555666666666666666666666554
No 91
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=96.62 E-value=0.033 Score=34.91 Aligned_cols=73 Identities=8% Similarity=-0.002 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcCHHhHhh
Q 038287 9 DIFTYNFLVKCLCKCRSL-TTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNT 86 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 86 (91)
+...+..+-..|...|++ ++|...|+...+. .| +...|..+-.+|.+.|++++|.+.+++.... .|+...+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 175 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKL---EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQN 175 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHH
Confidence 556777788888999999 9999999998765 45 4788999999999999999999999999865 366444443
No 92
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.62 E-value=0.022 Score=29.16 Aligned_cols=62 Identities=10% Similarity=0.005 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
..+...=..|.+.|++++|...|+...+. .| +...|..+-.++.+.|++++|++.+++..+.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 76 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL 76 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh
Confidence 34556667788999999999999998764 45 5788999999999999999999999998753
No 93
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.61 E-value=0.017 Score=27.77 Aligned_cols=56 Identities=9% Similarity=0.157 Sum_probs=46.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhhCCCCc-cHH-hHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 17 VKCLCKCRSLTTVYNFVDQMRASLGIKP-NLV-TYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
-..+.+.|++++|...|+...+. .| +.. .|..+-.++.+.|+.++|.+.+++....
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 35577889999999999998865 45 455 7888888999999999999999998754
No 94
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=96.61 E-value=0.04 Score=32.11 Aligned_cols=64 Identities=8% Similarity=-0.018 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
+...+..+-..+.+.|++++|...++..... ...+...+..+...+...|++++|.+.+++...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 153 DAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5566777788888888888888888888753 123567788888888888888888888888764
No 95
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.61 E-value=0.029 Score=35.72 Aligned_cols=64 Identities=3% Similarity=-0.053 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhh----CC-CCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRAS----LG-IKP-NLVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
..+++.|...|...|++++|..+++..... +| -.| ...+++.+-..|...|+.++|..++++..
T Consensus 351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 467999999999999999999999986542 22 234 36779999999999999999999988875
No 96
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.55 E-value=0.027 Score=31.71 Aligned_cols=65 Identities=15% Similarity=0.028 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhh----CC-CCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRAS----LG-IKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
...+..+-..|...|++++|...++..... .+ -.| ...++..+...+.+.|+.++|.+.+++...
T Consensus 127 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 127 AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456788888999999999999999987653 01 133 466788999999999999999999998874
No 97
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.54 E-value=0.028 Score=29.59 Aligned_cols=66 Identities=14% Similarity=0.078 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcCH
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDC 81 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 81 (91)
..|..+-.+|.+.|++++|...++..... .| +...|..+-.++...|++++|.+.+++.... .|+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKR---EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 56788888999999999999999998764 45 5778889999999999999999999988753 3553
No 98
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.52 E-value=0.046 Score=31.78 Aligned_cols=62 Identities=10% Similarity=0.010 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
+...|..+-.+|.+.|++++|...++...+ +.| +...+..+-.++.+.|+.++|.+.+++..
T Consensus 37 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 37 VAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555566666666666666666666543 233 34555666666666666666666666554
No 99
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.50 E-value=0.036 Score=31.15 Aligned_cols=66 Identities=12% Similarity=-0.019 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhC------CCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL------GIKPNLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
...++..+-..|...|++++|...++...... .......++..+-..+...|++++|.+.+++...
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 113 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 113 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34567888899999999999999999876531 1122467899999999999999999999998864
No 100
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.50 E-value=0.038 Score=30.61 Aligned_cols=67 Identities=10% Similarity=-0.075 Sum_probs=55.7
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
.|+..+...-..+.+.|++++|...|+..... ...++...+..+-.++.+.|+.++|.+.+++....
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 71 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKL-TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK 71 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Confidence 35567777888899999999999999998875 32266777777899999999999999999998764
No 101
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.49 E-value=0.025 Score=28.31 Aligned_cols=58 Identities=14% Similarity=-0.019 Sum_probs=47.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhCCCCccH----HhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 15 FLVKCLCKCRSLTTVYNFVDQMRASLGIKPNL----VTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
.+-..+.+.|++++|...|+..... .|+. ..+..+-.++.+.|+.++|.+.+++....
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~ 68 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR 68 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3456677899999999999998875 3432 47778888999999999999999998754
No 102
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.48 E-value=0.034 Score=31.38 Aligned_cols=62 Identities=10% Similarity=0.025 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCcc--HHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPN--LVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
.+..+-..|.+.|++++|...++..... ...++ ...|..+-..+.+.|+.++|.+.+++...
T Consensus 39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~ 102 (272)
T 3u4t_A 39 IYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVD 102 (272)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4555556666666666666666666542 11111 22356666666666666666666666654
No 103
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=96.48 E-value=0.021 Score=35.77 Aligned_cols=64 Identities=13% Similarity=0.032 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHcc---------CCHHHHHHHHHHHHhC
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT---------KNLREAMRLVSALSDS 75 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~m~~~ 75 (91)
+...|..+-..|.+.|++++|...|+...+ +.|+...+..+-..+.+. |++++|.+.+++..+.
T Consensus 136 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 208 (474)
T 4abn_A 136 LVEAWNQLGEVYWKKGDVTSAHTCFSGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM 208 (474)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh
Confidence 467888999999999999999999999985 468888899999999999 9999999999998754
No 104
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=96.46 E-value=0.033 Score=37.04 Aligned_cols=62 Identities=11% Similarity=0.003 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
...++.|=..|.+.|++++|...|++..+. .| +...|..+-.++.+.|+.++|++.|++..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~ 71 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 71 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345666666666666666666666665543 34 255566666666666666666666666543
No 105
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.42 E-value=0.034 Score=31.85 Aligned_cols=65 Identities=12% Similarity=-0.011 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhC-----CCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASL-----GIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
...+..+-..+...|++++|..+++...... +-.| ...++..+...+.+.|+.++|.+.+++...
T Consensus 153 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 153 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567788889999999999999999876530 1123 356788899999999999999999998874
No 106
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.39 E-value=0.058 Score=31.38 Aligned_cols=64 Identities=11% Similarity=-0.058 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
+...+..+-..+.+.|++++|...|+..... .| +...|..+-.++.+.|++++|.+.+++..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 67 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 67 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4556777788899999999999999998865 45 6778899999999999999999999998754
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.38 E-value=0.048 Score=30.43 Aligned_cols=65 Identities=8% Similarity=-0.040 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
..+..+-..+.+.|++++|...|+.+.....-.| ....+..+..++.+.|++++|.+.|++..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 70 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3455566778889999999999999987511112 1356777889999999999999999999753
No 108
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=96.36 E-value=0.062 Score=31.45 Aligned_cols=63 Identities=8% Similarity=0.028 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc--cHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP--NLVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
..|..+...+.+.|++++|..+|+.......+.| ....|...+....+.|+.+.+..+++++.
T Consensus 204 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 204 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444555555555555555555543211122 23344444444445555555555555543
No 109
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.35 E-value=0.049 Score=31.15 Aligned_cols=66 Identities=12% Similarity=-0.087 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhC-----CCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASL-----GIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
...+..+-..|...|++++|...|+...... +-.| ....+..+...+.+.|++++|.+.+++....
T Consensus 111 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 111 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567888899999999999999999877531 1123 4667888899999999999999999998753
No 110
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.33 E-value=0.071 Score=31.86 Aligned_cols=63 Identities=8% Similarity=-0.017 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
...|..+-.+|.+.|++++|...|+..... .| +...|..+-.++...|+.++|.+.|++..+.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALEL---DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 467888889999999999999999998864 44 5778899999999999999999999998753
No 111
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.33 E-value=0.063 Score=33.78 Aligned_cols=64 Identities=8% Similarity=-0.005 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
+...|..+-.+|.+.|++++|...+++..+. .| +...|..+-.++.+.|+.++|.+.+++..+.
T Consensus 39 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 103 (477)
T 1wao_1 39 NAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 103 (477)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888889999999999999999998764 45 5778888999999999999999999998753
No 112
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=96.31 E-value=0.066 Score=33.22 Aligned_cols=61 Identities=11% Similarity=0.085 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
..++..+-..+...|++++|...|+..... .| +...|..+...+.+.|++++|.+.+++..
T Consensus 310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 371 (537)
T 3fp2_A 310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSL---NPENVYPYIQLACLLYKQGKFTESEAFFNETK 371 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555555555555555555555555442 22 23445555555555555555555555554
No 113
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.30 E-value=0.036 Score=28.10 Aligned_cols=63 Identities=13% Similarity=0.018 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
+...|..+=.++.+.|++++|...|+...+. .| +...+..+-.++.+.|+.++|.+.+++..+
T Consensus 50 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 50 REEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5667778888899999999999999998764 55 467888888999999999999999998875
No 114
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.26 E-value=0.052 Score=30.63 Aligned_cols=62 Identities=13% Similarity=0.072 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
..|..+-..|.+.|++++|...|+...+. .| +...|..+-..+.+.|++++|.+.+++....
T Consensus 75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 75 ADFEYYGKILMKKGQDSLAIQQYQAAVDR---DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 44777888888999999999999988764 33 4567888888999999999999988888654
No 115
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=96.19 E-value=0.063 Score=33.30 Aligned_cols=63 Identities=14% Similarity=0.194 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
+...+..+-..+.+.|++++|...++...+. .| +...+..+...+.+.|++++|.+.+++...
T Consensus 343 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 343 NVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3467888899999999999999999999875 34 466889999999999999999999999864
No 116
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.18 E-value=0.05 Score=28.56 Aligned_cols=63 Identities=10% Similarity=0.016 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHH-HHHHHh
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRL-VSALSD 74 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~-~~~m~~ 74 (91)
+...|..+-..|.+.|++++|...|+...+. .| +...|..+-..+.+.|+.+++.+. +++..+
T Consensus 64 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 64 DPKAHRFLGLLYELEENTDKAVECYRRSVEL---NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCchHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 5677888999999999999999999998864 56 477888899999999998776654 466654
No 117
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=96.12 E-value=0.097 Score=34.90 Aligned_cols=59 Identities=12% Similarity=0.059 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
.|+.+-..|.+.|++++|.+.|++..+. .| +...|..+-.++.+.|+.++|++.+++..
T Consensus 79 a~~nLg~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al 138 (723)
T 4gyw_A 79 AYSNMGNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTAL 138 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444445555555544444332 23 23444444455555555555555554443
No 118
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=96.11 E-value=0.11 Score=33.05 Aligned_cols=59 Identities=8% Similarity=-0.043 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
.+..+-..|.+.|++++|...|++..+. .| +...+..+-.++.+.|+.++|.+.+++..
T Consensus 59 ~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 118 (568)
T 2vsy_A 59 AVARLGRVRWTQQRHAEAAVLLQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAH 118 (568)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444444444444444332 22 23344444444444444444444444443
No 119
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.04 E-value=0.11 Score=31.67 Aligned_cols=63 Identities=10% Similarity=-0.015 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
...|..+-.+|.+.+++++|...++...+. .| +...|..+-.++.+.|+.++|.+.+++..+.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEI---DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 456788888999999999999999999853 55 5778888999999999999999999998753
No 120
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.03 E-value=0.075 Score=31.78 Aligned_cols=63 Identities=6% Similarity=-0.146 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCcc----------------HHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPN----------------LVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
...+..+-..|.+.|++++|...|+..... .|+ ...|..+-.++.+.|++++|.+.+++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356777778889999999999999998764 343 4789999999999999999999999987
Q ss_pred hC
Q 038287 74 DS 75 (91)
Q Consensus 74 ~~ 75 (91)
..
T Consensus 224 ~~ 225 (336)
T 1p5q_A 224 EL 225 (336)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 121
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.01 E-value=0.066 Score=28.46 Aligned_cols=60 Identities=15% Similarity=0.230 Sum_probs=28.6
Q ss_pred HHHHHHHH-HHhcCCh--HHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 12 TYNFLVKC-LCKCRSL--TTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 12 ~~~~li~~-~~~~~~~--~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
.+..+-.. +.+.|++ ++|...|+..... .| +...+..+...+.+.|+.++|.+.+++...
T Consensus 80 ~~~~la~~l~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 80 LYAALATVLYYQASQHMTAQTRAMIDKALAL---DSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 33334344 4444554 5555555554432 22 234444455555555555555555555543
No 122
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.93 E-value=0.14 Score=31.69 Aligned_cols=73 Identities=11% Similarity=-0.007 Sum_probs=58.4
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcCHHhHh
Q 038287 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYN 85 (91)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 85 (91)
.+..++..+-..+...|++++|...++....- .|+...|..+=..+.-.|++++|.+.+++.... .|...||.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L---n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDL---EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 45667777766677779999999999999875 488888888888889999999999999888754 45555553
No 123
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=95.90 E-value=0.083 Score=28.72 Aligned_cols=62 Identities=13% Similarity=-0.005 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
..+..+-.+|.+.|++++|...++..... .| +...+..+-.++...|+.++|.+.+++....
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKI---DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 56777888899999999999999998764 34 5778888999999999999999999998753
No 124
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=95.83 E-value=0.11 Score=29.48 Aligned_cols=64 Identities=5% Similarity=-0.156 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCcc----HHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPN----LVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
+...+-.+-..+.+.|++++|...|+..... .|+ ...+..+-.++.+.|++++|.+.+++..+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 81 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTY---GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI 81 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG---CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 4556666777888999999999999999875 343 567888889999999999999999999764
No 125
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=95.79 E-value=0.085 Score=28.01 Aligned_cols=65 Identities=8% Similarity=-0.017 Sum_probs=53.5
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHH-HHccCCH--HHHHHHHHHHHhC
Q 038287 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDN-VCNTKNL--REAMRLVSALSDS 75 (91)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~-~~~~~~~--~~a~~~~~~m~~~ 75 (91)
.+...|..+-..|...|++++|...|+..... .| +...+..+..+ +...|+. ++|.+.+++....
T Consensus 42 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~ 110 (177)
T 2e2e_A 42 QNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110 (177)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 35677888889999999999999999998764 33 56677777777 7788998 9999999998754
No 126
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=95.77 E-value=0.081 Score=30.82 Aligned_cols=61 Identities=8% Similarity=-0.018 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
..+..+-..+.+.|++++|...|+..... .| +...+..+...+.+.|++++|.+.+++...
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 34555666778899999999999998765 55 467788889999999999999999988754
No 127
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=95.76 E-value=0.14 Score=32.50 Aligned_cols=64 Identities=19% Similarity=0.063 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
+...+..+-..|.+.|++++|...|+...+. .| +...|..+-.++.+.|+.++|.+.+++..+.
T Consensus 22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 86 (568)
T 2vsy_A 22 DFVAWLMLADAELGMGDTTAGEMAVQRGLAL---HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA 86 (568)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4667888889999999999999999998753 55 4778899999999999999999999998754
No 128
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=95.66 E-value=0.12 Score=30.92 Aligned_cols=60 Identities=8% Similarity=-0.006 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
.|..+-.+|.+.+++++|...++..... .| +...|..+-.++...|++++|.+.|++...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6777888899999999999999998764 45 577899999999999999999999998864
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=95.58 E-value=0.095 Score=27.11 Aligned_cols=62 Identities=13% Similarity=0.023 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
..+..+-..+...|++++|...|+..... .| +...+..+..++.+.|++++|.+.+++....
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 76 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 76 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45667777888999999999999998764 34 5778888999999999999999999998754
No 130
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=95.58 E-value=0.18 Score=30.35 Aligned_cols=68 Identities=7% Similarity=0.031 Sum_probs=54.2
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC-CccHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGI-KPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
+++..+...+-..+...|++++|.++++..... +. .-+...+...+..+.+.|+++.|.+.+++|.+.
T Consensus 97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDN-DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 345555566778888999999999999987543 22 126778889999999999999999999999753
No 131
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=95.55 E-value=0.21 Score=31.15 Aligned_cols=63 Identities=13% Similarity=0.046 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
...|..+-.+|.+.+++++|...++..... .| +...|..+-.+|.+.|++++|.+.|++..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGL---DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 466788888999999999999999998864 34 5778888999999999999999999998753
No 132
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=95.55 E-value=0.13 Score=28.60 Aligned_cols=56 Identities=11% Similarity=0.124 Sum_probs=47.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhhCCCCcc----HHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 17 VKCLCKCRSLTTVYNFVDQMRASLGIKPN----LVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
-..|.+.|++++|...|+.+.+. .|+ ...+..+..++.+.|+.++|.+.++.+...
T Consensus 154 a~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 154 AEYYTERGAWVAVVNRVEGMLRD---YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH---STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHcCcHHHHHHHHHHHHHH---CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 45677889999999999999876 343 256888999999999999999999988765
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=95.55 E-value=0.16 Score=29.43 Aligned_cols=65 Identities=9% Similarity=0.085 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHH---hhCCCCc--cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMR---ASLGIKP--NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
..+++.+-..|...|++++|...|+... +...-.+ ...++..+-..|.+.|+.++|.+.+++...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~ 224 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3478888899999999999999999876 3211112 225888999999999999999999988763
No 134
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=95.52 E-value=0.13 Score=31.58 Aligned_cols=58 Identities=12% Similarity=0.220 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCC-HHHHHHHHHHHH
Q 038287 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKN-LREAMRLVSALS 73 (91)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~a~~~~~~m~ 73 (91)
|+.+-..+.+.|++++|+..++..... .| +...|+.+-.++.+.|+ +++|++.+++..
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l---~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al 159 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIEL---NAANYTVWHFRRVLLKSLQKDLHEEMNYITAII 159 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHh---CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHH
Confidence 444444444455555555555554432 33 23444444445555553 555555555444
No 135
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=95.41 E-value=0.23 Score=30.51 Aligned_cols=64 Identities=11% Similarity=0.176 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 9 DIFTYNFLVKCLCKCRS-LTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
+...|+.+-..+.+.|+ +++|+..|+..... .| +...|..+-.++.+.|++++|.+.+++....
T Consensus 130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l---~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l 195 (382)
T 2h6f_A 130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE---QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ 195 (382)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 45678888899999996 99999999999865 55 5778999999999999999999999999753
No 136
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.34 E-value=0.19 Score=29.16 Aligned_cols=66 Identities=12% Similarity=-0.100 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhc-CChHHHHHHHHHHHhhC-CC-Cc--cHHhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 038287 11 FTYNFLVKCLCKC-RSLTTVYNFVDQMRASL-GI-KP--NLVTYTILIDNVCNTKNLREAMRLVSALSDSG 76 (91)
Q Consensus 11 ~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~-~~-~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g 76 (91)
.+++.+-..|... |++++|...|++...-. +. .+ ...++..+-..+.+.|+.++|.+.+++.....
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 188 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS 188 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4677778888886 99999999999876520 00 11 13568888999999999999999999998653
No 137
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=95.33 E-value=0.2 Score=29.16 Aligned_cols=53 Identities=19% Similarity=0.080 Sum_probs=35.5
Q ss_pred HHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 20 LCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 20 ~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
+.+.++.++|...++..... .| +...+..+-..+.+.|+.++|.+.+.+..+.
T Consensus 195 l~~~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 44556666677777766654 44 4566777777777777777777777777653
No 138
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=95.32 E-value=0.11 Score=26.37 Aligned_cols=64 Identities=8% Similarity=-0.020 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhC---CCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASL---GIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
..+..+-..+...|++++|...++...... +-.+ ....+..+-..+...|++++|.+.+++...
T Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 356667777888899999998888765420 1111 145677777888888999999888877753
No 139
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.30 E-value=0.2 Score=29.09 Aligned_cols=63 Identities=6% Similarity=-0.111 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccH------HhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNL------VTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
.+++.+-..|.+.|++++|...|+..... ...... ..|..+-.++...|+.++|.+.+++...
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKS-SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45778888999999999999999998764 222111 1466777788899999999999988864
No 140
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=95.25 E-value=0.15 Score=29.54 Aligned_cols=64 Identities=9% Similarity=0.080 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhh---C-CCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRAS---L-GIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~-~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
.+++.+-..|...|++++|...|+...+. . +..+ ...++..+-..|.+.|+.++|.+.+++...
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 36888889999999999999999988741 1 1122 234788899999999999999999888763
No 141
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=95.21 E-value=0.16 Score=27.54 Aligned_cols=67 Identities=6% Similarity=-0.081 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC-------------CCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLG-------------IKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-------------~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
+...+..+-..|.+.|++++|...|+....... ..| ....+..+-.++.+.|+.++|.+.+++...
T Consensus 70 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 70 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 556788888999999999999999999876311 111 236788889999999999999999999876
Q ss_pred C
Q 038287 75 S 75 (91)
Q Consensus 75 ~ 75 (91)
.
T Consensus 150 ~ 150 (213)
T 1hh8_A 150 M 150 (213)
T ss_dssp T
T ss_pred c
Confidence 4
No 142
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.21 E-value=0.2 Score=28.47 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=6.5
Q ss_pred cCChHHHHHHHHHHH
Q 038287 23 CRSLTTVYNFVDQMR 37 (91)
Q Consensus 23 ~~~~~~a~~~~~~m~ 37 (91)
.+++++|...|+...
T Consensus 55 ~~~~~~A~~~~~~a~ 69 (273)
T 1ouv_A 55 EKNLKKAASFYAKAC 69 (273)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 444444444444433
No 143
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=95.17 E-value=0.19 Score=28.81 Aligned_cols=63 Identities=8% Similarity=-0.025 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhC---CCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASL---GIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
.+..+-..+...|++++|...++...... +-.+ ...++..+...+...|+.++|.+.+++...
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 56667777788888888888888765420 1001 155677777888888888888888877653
No 144
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.04 E-value=0.19 Score=27.35 Aligned_cols=64 Identities=14% Similarity=0.015 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhh----CCCCcc-HHhH----HHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRAS----LGIKPN-LVTY----TILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~-~~~~----~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
..|+.+-.++.+.|++++|+..++...+. ..+.|+ .-.| ...-.++...|+.++|.+.|++...
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 37888889999999999999999987642 123674 5567 7888889999999999999998863
No 145
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=95.03 E-value=0.15 Score=25.96 Aligned_cols=64 Identities=8% Similarity=-0.110 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCC--CCc--cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLG--IKP--NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
.++..+-..+...|++++|...++....... -.+ -...+..+-..+...|+.++|.+.+++...
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 77 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLL 77 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567777888899999999999988764200 011 124788888999999999999999988764
No 146
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=95.00 E-value=0.23 Score=29.73 Aligned_cols=63 Identities=8% Similarity=-0.072 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhC---CC-CccHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASL---GI-KPNLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
.+..+-..|...|++++|...++...... +- .....++..+...+.+.|+.++|.+.+++...
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56666777778888888888887665420 00 01145677777778888888888887777653
No 147
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=94.98 E-value=0.21 Score=27.51 Aligned_cols=57 Identities=14% Similarity=0.058 Sum_probs=46.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhCCCCcc-HHhHHH----------------HHHHHHccCCHHHHHHHHHHHHhC
Q 038287 16 LVKCLCKCRSLTTVYNFVDQMRASLGIKPN-LVTYTI----------------LIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~----------------~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
.-..+.+.|++++|...|+..... .|+ ...|.. +-.++.+.|+.++|.+.+++..+.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL---NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 334567889999999999998764 564 455666 888899999999999999998753
No 148
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.96 E-value=0.14 Score=25.28 Aligned_cols=66 Identities=17% Similarity=0.075 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhC--C---CCccHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL--G---IKPNLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
+...+-.+=..+.+.+++.+|...|+...+.. . -.+....+..+..++.+.|+.+.|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44455667777889999999999999876531 1 123466788999999999999999999998875
No 149
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=94.89 E-value=0.25 Score=28.02 Aligned_cols=62 Identities=8% Similarity=0.058 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHh----cCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHc----cCCHHHHHHHHHHHHhCC
Q 038287 11 FTYNFLVKCLCK----CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCN----TKNLREAMRLVSALSDSG 76 (91)
Q Consensus 11 ~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~m~~~g 76 (91)
..+..+-..|.. .+++++|...|+...+. + +...+..+-..|.+ .++.++|.+.+++..+.+
T Consensus 75 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~ 144 (273)
T 1ouv_A 75 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-K---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN 144 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-C---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC
Confidence 344445555555 66666666666665543 1 44555555555665 666666666666665543
No 150
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=94.88 E-value=0.32 Score=29.15 Aligned_cols=64 Identities=13% Similarity=0.040 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhh---CCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRAS---LGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
.+++.+-..|...|++++|...|+....- .+..| ...++..+-..+.+.|+.++|.+.+++...
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46777778888999999999999887651 11213 366788888999999999999998888754
No 151
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=94.88 E-value=0.19 Score=33.08 Aligned_cols=64 Identities=9% Similarity=-0.026 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
+...+..+-..|.+.|++++|...|+...+. .| +...|..+-.++.+.|+.++|.+.|++..+.
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 496 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAER---VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT 496 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhcc---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4566777888899999999999999998764 45 5678888888999999999999999998753
No 152
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=94.85 E-value=0.26 Score=29.55 Aligned_cols=64 Identities=6% Similarity=0.010 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhC--CCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASL--GIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
.+++.+-..|...|++++|...|+...... .-.| ...++..+-..+.+.|+.++|.+.+++...
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456677788888999999999998876510 0122 366788888899999999999999998865
No 153
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.84 E-value=0.21 Score=26.98 Aligned_cols=67 Identities=10% Similarity=0.027 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCc
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKP 79 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p 79 (91)
..++.-++.....|.-++...++..+.. +..|+..-.-.+..||.+.|+.+++.++..+.-+.|++-
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~kE 158 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEKE 158 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhHH
Confidence 4456667777888888888888888533 447777788899999999999999999999999888763
No 154
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=94.81 E-value=0.28 Score=29.08 Aligned_cols=64 Identities=9% Similarity=-0.015 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhh---CCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRAS---LGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
..+..+-..|...|++++|...++..... .+-.+ ...++..+-..+.+.|++++|.+.+++...
T Consensus 228 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 228 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 35667777788888888888888876542 01111 155677778888888888888888877653
No 155
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=94.71 E-value=0.057 Score=28.88 Aligned_cols=56 Identities=14% Similarity=0.073 Sum_probs=33.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 15 FLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
.+-..+.+.|++++|...|+...+. .| +...+..+-..+.+.|++++|.+.+++..
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 67 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDE---LQSRGDVKLAKADCLLETKQFELAQELLATIP 67 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHH---HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh
Confidence 3444556666777777776665432 33 34556666666666777777766666654
No 156
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.58 E-value=0.17 Score=24.67 Aligned_cols=65 Identities=15% Similarity=0.107 Sum_probs=50.2
Q ss_pred cCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 8 PDIFTYNFLVKCLCKCRS---LTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 8 ~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
.+...+..+-.++...++ .++|..+++..... .| +......+-..+.+.|+.++|++.|+++...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~---dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL---EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455566666666654433 68999999998864 66 4677777888899999999999999999865
No 157
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=94.50 E-value=0.34 Score=28.99 Aligned_cols=64 Identities=5% Similarity=-0.168 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc----cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP----NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
..+..+-..|...|++++|...++.......-.+ ....+..+...+...|+.++|.+.+++...
T Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4677777889999999999999998765300001 123788899999999999999999988764
No 158
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=94.43 E-value=0.41 Score=29.88 Aligned_cols=62 Identities=6% Similarity=-0.119 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCcc----------------HHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPN----------------LVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
..+..+=..+.+.+++++|...|+..... .|+ ...|..+-.++.+.|++++|.+.+++...
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSW---LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 35667778888999999999999988763 333 57899999999999999999999999875
Q ss_pred C
Q 038287 75 S 75 (91)
Q Consensus 75 ~ 75 (91)
.
T Consensus 346 ~ 346 (457)
T 1kt0_A 346 L 346 (457)
T ss_dssp H
T ss_pred c
Confidence 3
No 159
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=94.43 E-value=0.29 Score=29.32 Aligned_cols=64 Identities=3% Similarity=-0.128 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhh---CCCC-ccHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRAS---LGIK-PNLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
.+++.+-..|...|++++|...|+..... .+-. ....++..+-..|...|+.++|.+.+++...
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45677778889999999999999887642 0101 1234788899999999999999999988865
No 160
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=94.38 E-value=0.36 Score=28.22 Aligned_cols=63 Identities=10% Similarity=-0.022 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhC---CCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASL---GIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
.+++.+-..|.+ |++++|...|+....-. +-.+ ...++..+-..+.+.|+.++|.+.+++...
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666767 88888888887765420 1000 145677777888888888888888887764
No 161
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=94.36 E-value=0.28 Score=26.23 Aligned_cols=66 Identities=8% Similarity=-0.133 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhh---CCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRAS---LGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
....+..+-..+...|++++|...++..... .+..+ ....+..+-..+...|++++|.+.+++...
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 94 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERE 94 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456778888899999999999999987651 11222 356788888899999999999999988764
No 162
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=94.21 E-value=0.5 Score=28.49 Aligned_cols=64 Identities=9% Similarity=0.034 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-----cHHhHHHHHHHH--HccC--CHHHHHHHHHHHHhC
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-----NLVTYTILIDNV--CNTK--NLREAMRLVSALSDS 75 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~~~~~~~--~~~~--~~~~a~~~~~~m~~~ 75 (91)
+...+...+..+.+.|+++.|.+.++.|.+. .| +..+...+..+. ...| ...+|..+|+++.+.
T Consensus 135 ~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~ 207 (310)
T 3mv2_B 135 TTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT 207 (310)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 3455667788899999999999999999765 56 245556666552 2223 788999999998654
No 163
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=94.13 E-value=0.62 Score=29.32 Aligned_cols=51 Identities=8% Similarity=-0.018 Sum_probs=39.3
Q ss_pred hcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 22 KCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 22 ~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
..|+.++|..+|+...+. .| +...|..+++...+.|+.++|..+|++....
T Consensus 403 ~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 578888888888877654 34 4677888888888888888888888888765
No 164
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=94.11 E-value=0.41 Score=27.66 Aligned_cols=63 Identities=8% Similarity=-0.165 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhh---CCCCc-cHHhHHHHHHHHHccCCHHHH-HHHHHHHH
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRAS---LGIKP-NLVTYTILIDNVCNTKNLREA-MRLVSALS 73 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~a-~~~~~~m~ 73 (91)
.+++.+-..|.+.|++++|...++..... .+... -..+|..+-.+|.+.|+.++| .+.+++..
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 57888888999999999999999986542 11111 266788888999999999999 67666654
No 165
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=94.04 E-value=0.44 Score=27.23 Aligned_cols=56 Identities=13% Similarity=0.096 Sum_probs=42.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhCCCCcc-----HHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 15 FLVKCLCKCRSLTTVYNFVDQMRASLGIKPN-----LVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
..-..+...|++++|..+|+...+. .|+ ...+..+...+...|++++|.+.+++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 70 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQV---GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 70 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3345667888999999999888764 333 3567788888888899999888887765
No 166
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=94.01 E-value=0.59 Score=28.58 Aligned_cols=64 Identities=11% Similarity=-0.019 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhh----C--CCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRAS----L--GIKP-NLVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~--~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
...||.|=..+...|+.++|++.|+...+- . ...| ...+|+.+-..|...|+.++|.+.+++..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~ 121 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK 121 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 456888888888999999999999875431 1 1133 46789999999999999999999888775
No 167
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=93.94 E-value=0.32 Score=26.40 Aligned_cols=75 Identities=12% Similarity=0.035 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccC-----------CHHHHH
Q 038287 9 DIFTYNFLVKCLCKCRS----------LTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTK-----------NLREAM 66 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~a~ 66 (91)
+...|+.+=.++...++ +++|+..|++..+- .| +...|..+=.+|.+.| ++++|.
T Consensus 35 ~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~ 111 (158)
T 1zu2_A 35 DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLAT 111 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHH
Confidence 45556655556665554 46999999988754 66 4667888888888764 899999
Q ss_pred HHHHHHHhCCCCcCHHhHhhhh
Q 038287 67 RLVSALSDSGFKPDCFVYNTIM 88 (91)
Q Consensus 67 ~~~~~m~~~g~~p~~~~~~~ll 88 (91)
+.|++... +.|+...|...+
T Consensus 112 ~~~~kAl~--l~P~~~~y~~al 131 (158)
T 1zu2_A 112 QFFQQAVD--EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHH--hCCCCHHHHHHH
Confidence 99999875 357666665443
No 168
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.93 E-value=0.29 Score=24.84 Aligned_cols=77 Identities=9% Similarity=0.127 Sum_probs=50.4
Q ss_pred HHHHHHHHHHH-hcC-ChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcCHHhHhhhh
Q 038287 11 FTYNFLVKCLC-KCR-SLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTIM 88 (91)
Q Consensus 11 ~~~~~li~~~~-~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 88 (91)
.-|++.-..|. +.. +..+..+-++.+-. +.+.|+.....+.++||-+..++..|.++++-.+.. ......+|..++
T Consensus 9 eeF~aRy~~~F~~~~iD~~e~rrglN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 9 EEFDARWVTYFNKPDIDAWELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTCTTCCHHHHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHcCCcCccHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 34454444444 444 56677777777754 377888888888888888888888888888877632 222234565554
Q ss_pred h
Q 038287 89 K 89 (91)
Q Consensus 89 ~ 89 (91)
+
T Consensus 87 q 87 (109)
T 1v54_E 87 Q 87 (109)
T ss_dssp H
T ss_pred H
Confidence 3
No 169
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=93.82 E-value=0.078 Score=26.36 Aligned_cols=53 Identities=13% Similarity=0.035 Sum_probs=38.9
Q ss_pred hcCChHHHHHHHHHHHhhCCC-Cc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 22 KCRSLTTVYNFVDQMRASLGI-KP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 22 ~~~~~~~a~~~~~~m~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
..|++++|...|++..+. +. .| +...|..+-.++.+.|+.++|.+.+++..+.
T Consensus 2 ~~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 56 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ 56 (117)
T ss_dssp -----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 357888999999998752 11 24 4677888889999999999999999999754
No 170
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=93.79 E-value=0.61 Score=28.37 Aligned_cols=64 Identities=6% Similarity=-0.001 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhC-------------CCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASL-------------GIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~-------------~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
.+..+-..+.+.+++++|...|+...+.. ...| +...|..+-.++.+.|++++|.+.+++..+.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 46666778889999999999999876510 0223 4677889999999999999999999999764
No 171
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=93.78 E-value=0.38 Score=25.68 Aligned_cols=64 Identities=14% Similarity=-0.053 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhC--CCCc--cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASL--GIKP--NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
..+..+-..+...|++++|...++...... .-.+ -..++..+-..+...|++++|.+.+++...
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 446677788889999999999998865320 1112 134467788889999999999998887763
No 172
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=93.74 E-value=0.46 Score=28.39 Aligned_cols=62 Identities=11% Similarity=-0.048 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHH------------------hHHHHHHHHHccCCHHHHHHHHHHH
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLV------------------TYTILIDNVCNTKNLREAMRLVSAL 72 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~a~~~~~~m 72 (91)
..+..+-..+.+.+++++|...|+..... .|+.. .|..+-.++.+.|++++|.+.+++.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555566777889999999999997654 45443 7888999999999999999999998
Q ss_pred HhC
Q 038287 73 SDS 75 (91)
Q Consensus 73 ~~~ 75 (91)
...
T Consensus 257 l~~ 259 (338)
T 2if4_A 257 LTE 259 (338)
T ss_dssp HHH
T ss_pred HHh
Confidence 753
No 173
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=93.72 E-value=0.41 Score=25.87 Aligned_cols=65 Identities=9% Similarity=-0.052 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCcc--------------HHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPN--------------LVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
..+..+-..+.+.|++++|...|+.......-.|+ ...|..+-.++.+.|++++|.+.+++....
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34556667788899999999999998763111221 267888899999999999999999998754
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=93.35 E-value=0.42 Score=30.09 Aligned_cols=54 Identities=15% Similarity=0.063 Sum_probs=46.8
Q ss_pred HHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 19 CLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 19 ~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
.+.+.|++++|...|++..+. .| +...|..+-.++.+.|+.++|.+.+++..+.
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 69 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 69 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 456789999999999998764 45 4788999999999999999999999999865
No 175
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=93.21 E-value=0.74 Score=27.25 Aligned_cols=63 Identities=11% Similarity=0.092 Sum_probs=49.2
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCcc-----HHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPN-----LVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
.....+...-..+.+.|++++|...|+..... .|+ ...|..+-..+...|++++|.+.+++..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 74 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQV---GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 74 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34445556667788899999999999998765 333 3568888889999999999999888765
No 176
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=93.13 E-value=0.73 Score=26.92 Aligned_cols=63 Identities=6% Similarity=-0.029 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhh---CCCCcc-HHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRAS---LGIKPN-LVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
.+++.+-..|.+.|++++|...|+..... .+..+. ...+..+..++...|+.++|.+.+++..
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 46777888899999999999999987652 011111 2356666677778899999999999887
No 177
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=92.96 E-value=0.87 Score=29.07 Aligned_cols=54 Identities=9% Similarity=0.019 Sum_probs=42.9
Q ss_pred HHhcCChHHHHHHHHHHHhh----CC-CCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 20 LCKCRSLTTVYNFVDQMRAS----LG-IKP-NLVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 20 ~~~~~~~~~a~~~~~~m~~~----~~-~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
+-..|++++|..+++..... .| -.| ...+++.+...|...|++++|..++++..
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL 378 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV 378 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 55779999999999876653 11 123 36779999999999999999999998875
No 178
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=92.95 E-value=0.3 Score=23.39 Aligned_cols=34 Identities=15% Similarity=0.070 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCcc
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPN 45 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 45 (91)
+...+..+-.++.+.|++++|...++.... +.|+
T Consensus 37 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~ 70 (111)
T 2l6j_A 37 NPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTST 70 (111)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSS
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCC
Confidence 566788888899999999999999999875 3565
No 179
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=92.67 E-value=0.83 Score=26.38 Aligned_cols=60 Identities=7% Similarity=0.040 Sum_probs=45.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhCCCCcc----HHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 15 FLVKCLCKCRSLTTVYNFVDQMRASLGIKPN----LVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
.+-..+...+++++|...|+.......-.++ ..+++.+-..|...|+.++|.+.+++...
T Consensus 120 ~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556666778999999999988763111222 33688899999999999999999998873
No 180
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=92.59 E-value=0.56 Score=29.31 Aligned_cols=57 Identities=16% Similarity=0.078 Sum_probs=44.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhhC-C-CC---c-cHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 17 VKCLCKCRSLTTVYNFVDQMRASL-G-IK---P-NLVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~m~~~~-~-~~---~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
+.-+.+.|++++|..+++...... . +. | ...+++.+...|...|++++|.+++++..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L 356 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM 356 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 555667899999999999887531 1 12 2 25679999999999999999999998876
No 181
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=92.57 E-value=0.7 Score=29.01 Aligned_cols=52 Identities=6% Similarity=0.049 Sum_probs=40.7
Q ss_pred hcCChHHHHHHHHHHHhh----CC-CCcc-HHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 22 KCRSLTTVYNFVDQMRAS----LG-IKPN-LVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 22 ~~~~~~~a~~~~~~m~~~----~~-~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
+.|++++|..+++..... .| -.|+ ..+++.+...|...|++++|..++++..
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL 367 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII 367 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 347889999999876552 11 1232 5779999999999999999999999886
No 182
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=92.56 E-value=0.68 Score=25.14 Aligned_cols=59 Identities=5% Similarity=-0.097 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhCCCCcc-------------HHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPN-------------LVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
+...=..+.+.|++++|...|+...+- .|+ ...|...-.++.+.|++++|++.+++...
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444455667889999999999988753 343 23899999999999999999999998875
No 183
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=92.34 E-value=0.84 Score=25.71 Aligned_cols=66 Identities=9% Similarity=0.014 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHc--------cCCHHHHHHHHHHHHhC
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCN--------TKNLREAMRLVSALSDS 75 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~--------~~~~~~a~~~~~~m~~~ 75 (91)
...+..+-.+|.+.|++++|...|+.......-.| ....+..+-.++.+ .|+.++|.+.|++....
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 45677778889999999999999999987511122 24456677777777 89999999999999753
No 184
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.16 E-value=0.75 Score=24.67 Aligned_cols=78 Identities=9% Similarity=0.109 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHH-hcC-ChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcCHHhHhhh
Q 038287 10 IFTYNFLVKCLC-KCR-SLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVYNTI 87 (91)
Q Consensus 10 ~~~~~~li~~~~-~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 87 (91)
..-|++--..|. +.. |..+..+-++.+-. +.+.|+.....+.+++|-+..++..|.++++-.+.. ..+...+|..+
T Consensus 51 ~EeFdaRy~~~F~~~~iD~wElrrglN~l~~-~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~ 128 (152)
T 2y69_E 51 DEEFDARWVTYFNKPDIDAWELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYV 128 (152)
T ss_dssp HHHHHHHHHHHHTCTTCCHHHHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHH
T ss_pred HHHHHHHHHHHcCCcCccHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHH
Confidence 344555544444 444 56677777777754 478888889999999999999999999999887633 23334456655
Q ss_pred hh
Q 038287 88 MK 89 (91)
Q Consensus 88 l~ 89 (91)
++
T Consensus 129 lq 130 (152)
T 2y69_E 129 IQ 130 (152)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=92.15 E-value=0.67 Score=24.13 Aligned_cols=65 Identities=14% Similarity=0.029 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhC-------CC--------Cc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASL-------GI--------KP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-------~~--------~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
..+...=..+.+.|++++|...|+...... .. .| +...|..+-.++.+.|++++|.+.+++...
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 445666677889999999999999876420 00 12 346788899999999999999999999875
Q ss_pred C
Q 038287 75 S 75 (91)
Q Consensus 75 ~ 75 (91)
.
T Consensus 92 ~ 92 (162)
T 3rkv_A 92 R 92 (162)
T ss_dssp H
T ss_pred c
Confidence 4
No 186
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.08 E-value=0.85 Score=23.18 Aligned_cols=48 Identities=10% Similarity=0.251 Sum_probs=40.2
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHH
Q 038287 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILID 54 (91)
Q Consensus 5 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~ 54 (91)
.+.|++....+-+.+|-+..++..|.++|+..+.+ ..+...+|..+++
T Consensus 40 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 40 DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 34589999999999999999999999999999875 3344556888877
No 187
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=90.89 E-value=1.6 Score=26.08 Aligned_cols=65 Identities=8% Similarity=-0.022 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhC---C-CCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASL---G-IKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~-~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
..++..+-..|...|+++.|...++...... + ..+ ...+++.+-.+|...|++++|.+.+.+...
T Consensus 141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 210 (378)
T 3q15_A 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALE 210 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3456777788889999999999988765421 1 111 255778888889999999999998888764
No 188
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=90.86 E-value=1.7 Score=26.22 Aligned_cols=75 Identities=9% Similarity=0.043 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhc-----CChHHHHHHHHHHHhhCCCCc--cHHhHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCC--c
Q 038287 10 IFTYNFLVKCLCKC-----RSLTTVYNFVDQMRASLGIKP--NLVTYTILIDNVCNT-KNLREAMRLVSALSDSGFK--P 79 (91)
Q Consensus 10 ~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~a~~~~~~m~~~g~~--p 79 (91)
-..|..|-..|.+. |+.++|.++|++..+- .| +..++...-+.++.. ++.+++.+.+++....... |
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCS
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCC
Confidence 34677888888885 9999999999999864 56 377778888888885 8999999999999887665 7
Q ss_pred CHHhHhhh
Q 038287 80 DCFVYNTI 87 (91)
Q Consensus 80 ~~~~~~~l 87 (91)
+....+.+
T Consensus 276 ~~~lan~~ 283 (301)
T 3u64_A 276 HNKLLVIL 283 (301)
T ss_dssp SCHHHHHH
T ss_pred ChhHHHHH
Confidence 76655543
No 189
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=90.74 E-value=2.2 Score=31.44 Aligned_cols=60 Identities=8% Similarity=0.098 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
+..+|..+=.++-+.|++++|...|..- -|...|.-+..++.+.|+++++.+.+...++.
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~ 1163 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 1163 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3457777778888888888888888543 25666777888888888888888888665543
No 190
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.34 E-value=1.3 Score=26.72 Aligned_cols=57 Identities=4% Similarity=-0.055 Sum_probs=42.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCccH---------------HhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 18 KCLCKCRSLTTVYNFVDQMRASLGIKPNL---------------VTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
..+.+.|++++|.+.|....+...-..+. ..+..+...|.+.|++++|.+.+.....
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45678899999999999987641111111 2377888999999999999999988753
No 191
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=89.68 E-value=0.93 Score=29.84 Aligned_cols=56 Identities=9% Similarity=-0.008 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 14 NFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 14 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
..+-.+|.+.|++++ ...|+...+. .| +...|..+-.++.+.|+.++|.+.+++..
T Consensus 505 ~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 561 (681)
T 2pzi_A 505 LALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAVRTLDEVP 561 (681)
T ss_dssp HHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 333333444444444 4444443322 23 24445555556666666666666665554
No 192
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=89.39 E-value=1.1 Score=21.79 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 28 TVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 28 ~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
++...|+...+. .| +...+..+-..+.+.|++++|.+.+++....
T Consensus 3 ~a~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 48 (115)
T 2kat_A 3 AITERLEAMLAQ---GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF 48 (115)
T ss_dssp CHHHHHHHHHTT---TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 466777777643 44 5778888999999999999999999998754
No 193
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.96 E-value=1.7 Score=23.36 Aligned_cols=48 Identities=10% Similarity=0.251 Sum_probs=40.5
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHH
Q 038287 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILID 54 (91)
Q Consensus 5 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~ 54 (91)
.+.|++....+-+.++-+..++..|.++|+..+.+ ..+....|..+++
T Consensus 83 DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 83 DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 34589999999999999999999999999999875 4455667888877
No 194
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=88.85 E-value=1.7 Score=23.43 Aligned_cols=70 Identities=14% Similarity=0.162 Sum_probs=50.2
Q ss_pred cCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhhCCCCc--cHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcCH
Q 038287 8 PDIFTYNFLVKCLCKCR---SLTTVYNFVDQMRASLGIKP--NLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDC 81 (91)
Q Consensus 8 ~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 81 (91)
++..+--.+--++++.+ +.++++.+|+...+. . .| ....+-.+--+|.+.++.++|.+.++...+. +|+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i--eP~n 104 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--EPQN 104 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCC
Confidence 45555555666777777 677999999998876 2 24 3444555556789999999999999998753 4543
No 195
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=88.35 E-value=1 Score=20.32 Aligned_cols=30 Identities=7% Similarity=0.070 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHhhCCCCccHHhHHHHHHHH
Q 038287 26 LTTVYNFVDQMRASLGIKPNLVTYTILIDNV 56 (91)
Q Consensus 26 ~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~ 56 (91)
.++|...|-+|.++.+|.|+. ||.-.|+.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~w-sweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTW-SFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSC-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCC-cHHHHHHHh
Confidence 468888999998876777766 799999998
No 196
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=88.13 E-value=2.8 Score=24.92 Aligned_cols=62 Identities=11% Similarity=-0.108 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhCCCCcc--HHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPN--LVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
+..+=.++.+.|++++|+..|++.... ...|. .......-.++.+.|+.++|.++|+++...
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344445666777788888877777532 22243 224455556667777788888877777653
No 197
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.01 E-value=3 Score=25.14 Aligned_cols=65 Identities=9% Similarity=0.008 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhC-C--CCc-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASL-G--IKP-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~--~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
..++..+-..|...|++++|..+++...... + -++ ....+..+...|...|++.+|...++....
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3467778889999999999999999876531 1 122 356789999999999999999999988753
No 198
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=87.70 E-value=1.5 Score=26.01 Aligned_cols=67 Identities=13% Similarity=-0.090 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCcc--HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcC
Q 038287 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPN--LVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPD 80 (91)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 80 (91)
....+-..+.+.+++++|+..|+..... ..|. ...+..+=.++.+.|++++|++.|++.......|.
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~ 205 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEA 205 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCcc
Confidence 4444444666778888888887744321 1121 22466666778888999999999988874433354
No 199
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=87.28 E-value=1.5 Score=21.15 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=28.3
Q ss_pred ChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHcc
Q 038287 25 SLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59 (91)
Q Consensus 25 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 59 (91)
..+++...|..|..+.+|.|+. +|...+.....-
T Consensus 15 t~eea~~~Fk~LL~e~~V~p~~-tWe~~~~~i~~D 48 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVSAFS-TWEKELHKIVFD 48 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCCSSS-CHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHccC
Confidence 4689999999999988888877 799999877654
No 200
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=87.01 E-value=3.3 Score=24.51 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhC-CCCc--cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASL-GIKP--NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
..+..+-..+...|++++|...++...... ...+ ...++..+...+...|++++|.+.+++...
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566678889999999999999876531 1112 235677888889999999999999998864
No 201
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=86.38 E-value=5.6 Score=26.59 Aligned_cols=77 Identities=13% Similarity=0.133 Sum_probs=59.3
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCC---HHHHHHHHHHHHhCC-CCcCHHh
Q 038287 8 PDIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN---LREAMRLVSALSDSG-FKPDCFV 83 (91)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~m~~~g-~~p~~~~ 83 (91)
-|..+|..++...-+.+.++.+..+|+.+... ......-|...++.-.+.+. .+.+.++|++.+... ..|++..
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 47788999999999999999999999999875 23345668888888778888 999999999998653 2366666
Q ss_pred Hhh
Q 038287 84 YNT 86 (91)
Q Consensus 84 ~~~ 86 (91)
|..
T Consensus 142 W~~ 144 (679)
T 4e6h_A 142 WLS 144 (679)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 202
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.07 E-value=2.3 Score=26.15 Aligned_cols=43 Identities=12% Similarity=0.182 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHh----hCCCCccHHhHHH
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRA----SLGIKPNLVTYTI 51 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~~~~~~ 51 (91)
+...|-.+|.++.+.|+..+|.+.|+.... ..|+.|+..+-..
T Consensus 204 ~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 204 REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 566789999999999999999999998765 3589998765433
No 203
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=85.78 E-value=3 Score=22.90 Aligned_cols=62 Identities=11% Similarity=0.141 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccC----CHHHHHHHHHHHHhCC
Q 038287 10 IFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK----NLREAMRLVSALSDSG 76 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~----~~~~a~~~~~~m~~~g 76 (91)
...+..+=..|...+++++|...|+...+. + +...+..+-..|.. + +.++|.+.|++....|
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g 83 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-G---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG 83 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-T---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC
Confidence 344455555555666667777666666543 2 34444444444544 4 5666666666665443
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=85.62 E-value=1.6 Score=19.76 Aligned_cols=45 Identities=11% Similarity=0.042 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHH
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNV 56 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~ 56 (91)
+...+..+-..+.+.|++++|...|+..... .| +...+..+-.++
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 42 NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAKQNLGNAK 87 (91)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCHHHHHHHHHHH
Confidence 4567788888999999999999999998764 44 344444444443
No 205
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=85.24 E-value=4.8 Score=29.84 Aligned_cols=56 Identities=18% Similarity=0.154 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHH
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMR 67 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 67 (91)
|...|..+..++.+.|++++|.++|....+. .++....+.+..+|++.+++++..+
T Consensus 1133 D~say~eVa~~~~~lGkyEEAIeyL~mArk~---~~e~~Idt~LafaYAKl~rleele~ 1188 (1630)
T 1xi4_A 1133 DPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEE 1188 (1630)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cccccccHHHHHHHHhhcCHHHHHH
Confidence 4556788889999999999999999876543 3343334457777777766664333
No 206
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=84.78 E-value=4.9 Score=24.49 Aligned_cols=61 Identities=7% Similarity=-0.059 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHh----HHHHHH-HHHccCCHHHHHHHHHHHHh
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVT----YTILID-NVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~a~~~~~~m~~ 74 (91)
..+..+-..|.+.|++++|...|+..... .|+... +..+-. ...+.|+.++|++.+.+...
T Consensus 335 ~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 335 RVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34667778889999999999999988754 333222 111111 23467889999988887764
No 207
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=83.46 E-value=2.4 Score=27.89 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=24.0
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 45 NLVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
+...|..+-+.+.+.++++.|++.|.++.
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 56678888888888888888888888764
No 208
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=83.38 E-value=2.4 Score=19.81 Aligned_cols=34 Identities=6% Similarity=0.097 Sum_probs=28.1
Q ss_pred ChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHcc
Q 038287 25 SLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59 (91)
Q Consensus 25 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 59 (91)
..++|...|..|..+.+|.|+. +|...+..+..-
T Consensus 13 t~eea~~~F~~LL~e~~V~~~~-tWe~~~~~i~~D 46 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSNA-SWEQAMKMIIND 46 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTTC-CHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHccC
Confidence 4689999999999887877776 799999877754
No 209
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=82.34 E-value=7.3 Score=26.56 Aligned_cols=51 Identities=6% Similarity=0.064 Sum_probs=44.0
Q ss_pred HHhcCChHHHHHHHHHHHhhCCCCcc-HHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 20 LCKCRSLTTVYNFVDQMRASLGIKPN-LVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 20 ~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
+...++++-|+.+-+..... .|+ ..+|-.+..+|.+.|+++.|.=.++.+.
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~---aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL---ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34679999999999988754 785 8899999999999999999998888773
No 210
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=81.60 E-value=4.8 Score=22.05 Aligned_cols=61 Identities=8% Similarity=0.029 Sum_probs=35.0
Q ss_pred HHHHHHHHHHh----cCChHHHHHHHHHHHhhCCCCcc---HHhHHHHHHHHHc----cCCHHHHHHHHHHHHhC
Q 038287 12 TYNFLVKCLCK----CRSLTTVYNFVDQMRASLGIKPN---LVTYTILIDNVCN----TKNLREAMRLVSALSDS 75 (91)
Q Consensus 12 ~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~a~~~~~~m~~~ 75 (91)
.+..|=..|.. .+++++|..+|+...+. .++ ...+..+-..|.. .++.++|.+.|++....
T Consensus 87 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 87 GEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 34444444444 56667777777666543 332 4555556566655 55677777777666554
No 211
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.78 E-value=5.2 Score=21.98 Aligned_cols=69 Identities=16% Similarity=0.085 Sum_probs=44.7
Q ss_pred CCCcCHHHHH--HHHHHHHhcCChHHHHHHHHHHHhhCCCCccH-------HhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 5 QLPPDIFTYN--FLVKCLCKCRSLTTVYNFVDQMRASLGIKPNL-------VTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 5 ~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
|+.|.-..|+ .=+..+...+.++.|..+.+.+....+..|+. .++..+-+++...+..+.|...|++..
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4444433333 33677888999999998888755432223442 356777889999999999999999864
No 212
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=80.05 E-value=5.7 Score=21.98 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=37.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 17 VKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
+.....+|+++.|.++.+.+. +...|..+-+..-+.|+++.|++.|.+..
T Consensus 12 F~LAL~lg~l~~A~e~a~~l~-------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKLN-------DSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHhcCCHHHHHHHHHHhC-------CHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 445567788888888877662 45678888888888888888888777664
No 213
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=77.77 E-value=5.4 Score=20.36 Aligned_cols=65 Identities=14% Similarity=0.050 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHh----cCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCC
Q 038287 10 IFTYNFLVKCLCK----CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCN----TKNLREAMRLVSALSDSGFK 78 (91)
Q Consensus 10 ~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~m~~~g~~ 78 (91)
...+..|=..|.. .+++++|...|+...+. -+...+..+-..|.. .++.++|.+.+++..+.|..
T Consensus 57 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 3445555555655 67888888888887664 245556666666766 67888888888888776543
No 214
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.10 E-value=9.3 Score=22.75 Aligned_cols=50 Identities=10% Similarity=0.126 Sum_probs=24.2
Q ss_pred HHhcCChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 038287 20 LCKCRSLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKNLREAMRLVSAL 72 (91)
Q Consensus 20 ~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m 72 (91)
..+.++++++++....-.+. .| |...=..+++-+|-.|+++.|.+-++..
T Consensus 7 ll~~g~L~~al~~~~~~VR~---~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 33445555555555444433 23 3444445555555555555555433333
No 215
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=76.36 E-value=2.4 Score=20.30 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=22.2
Q ss_pred HHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHH
Q 038287 32 FVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVS 70 (91)
Q Consensus 32 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 70 (91)
+++++. ++-|+..||+-+.+..-+..-..++..+.+
T Consensus 25 LL~kIP---nLPpgVnTW~qI~el~qkk~i~~~~m~iik 60 (81)
T 2ko4_A 25 LLQRIP---NIPPNINTWQQVTALAQQKLLTPQDMEAAK 60 (81)
T ss_dssp HHTTSS---SCCTTTCBHHHHHHHHTTTSSCHHHHHHHH
T ss_pred HHhhCC---CCCCCcchHHHHHHHHHcCCCCHHHHHHHH
Confidence 444443 678888899988886555544444444333
No 216
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=75.98 E-value=3.8 Score=18.36 Aligned_cols=25 Identities=12% Similarity=-0.020 Sum_probs=18.8
Q ss_pred cCChHHHHHHHHHHHhhCCCCccHH
Q 038287 23 CRSLTTVYNFVDQMRASLGIKPNLV 47 (91)
Q Consensus 23 ~~~~~~a~~~~~~m~~~~~~~~~~~ 47 (91)
..+++.|...|..++....|-|+.+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 4688999999999887645666554
No 217
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=75.98 E-value=9.8 Score=22.43 Aligned_cols=62 Identities=13% Similarity=0.012 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhC---CCC--c-cHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 13 YNFLVKCLCKCRSLTTVYNFVDQMRASL---GIK--P-NLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~--~-~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
.+.+-..+...|++++|...++...... +-. | ....+..+-..+...|++++|.+.+++...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 163 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 163 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4556677888999999999998876521 111 3 244566777888999999999999998864
No 218
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=75.30 E-value=16 Score=24.51 Aligned_cols=49 Identities=8% Similarity=-0.001 Sum_probs=26.6
Q ss_pred ChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 25 SLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 25 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
+.+.|..+|+...+.. .-+..-|...++-....|+.+.|..+|++....
T Consensus 485 d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 485 DTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp CCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 4666666666655531 112333445555555556666666666666543
No 219
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=74.78 E-value=7 Score=20.23 Aligned_cols=67 Identities=10% Similarity=0.127 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCC--HHHHHHHHHHHHhCCCCcC
Q 038287 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN--LREAMRLVSALSDSGFKPD 80 (91)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~~~~m~~~g~~p~ 80 (91)
..+.++.=|...|+.++|.+.++++... .--..++..++..+.-+.+. .+....++..+...|+-+.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p--~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVP--HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCG--GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4577889999999999999999998521 11234556666666666542 4566788888877765443
No 220
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.62 E-value=13 Score=23.22 Aligned_cols=61 Identities=3% Similarity=-0.074 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhh-CCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 13 YNFLVKCLCKCRSLTTVYNFVDQMRAS-LGIKPNLVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
...+-..|.++|+++.|.+.|.++... .+..--...+-.+++.+...+++..+.....+..
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 445677889999999999999999864 1333445667788889999999999998888875
No 221
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=72.65 E-value=7.8 Score=22.99 Aligned_cols=45 Identities=7% Similarity=0.128 Sum_probs=33.6
Q ss_pred HHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 038287 32 FVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGF 77 (91)
Q Consensus 32 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~ 77 (91)
+++++.+. |+.|..+++..++..+++.=.++.+..+|+.+...|.
T Consensus 176 L~~hL~~~-~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~ 220 (310)
T 3hzj_A 176 LHSHFSDL-NLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGL 220 (310)
T ss_dssp HHHHHHHH-TCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHc-CCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCc
Confidence 44555544 7888888888888888877778888888888876654
No 222
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=71.33 E-value=9.8 Score=20.37 Aligned_cols=67 Identities=10% Similarity=0.127 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCC--HHHHHHHHHHHHhCCCCcC
Q 038287 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN--LREAMRLVSALSDSGFKPD 80 (91)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~~~~m~~~g~~p~ 80 (91)
..+.++.=|...++.++|.+.++++... .--..++..++..+.-+.+. .+....++..+...|+-+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p--~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVP--HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCG--GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4678899999999999999999999521 11134456666666666432 4556788888877665443
No 223
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=70.49 E-value=6.5 Score=23.55 Aligned_cols=47 Identities=13% Similarity=0.188 Sum_probs=32.6
Q ss_pred HHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 038287 31 NFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFK 78 (91)
Q Consensus 31 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~ 78 (91)
++++++.+. ++.|..+++..++..+.+.=.++.+..+|+.+...|.+
T Consensus 209 ~L~~hL~~~-~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~ 255 (331)
T 3qye_A 209 DLYNHLEEH-EIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTE 255 (331)
T ss_dssp HHHHHHHHT-TCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHc-CCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcH
Confidence 345555543 77777777888877777777777778888777765543
No 224
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=69.41 E-value=18 Score=22.51 Aligned_cols=63 Identities=10% Similarity=-0.023 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHh----cCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHc----cCCHHHHHHHHHHHHhCC
Q 038287 10 IFTYNFLVKCLCK----CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCN----TKNLREAMRLVSALSDSG 76 (91)
Q Consensus 10 ~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~m~~~g 76 (91)
...+..+=..|.. .+++++|...|+...+. + +...+..+-..|.+ .++.++|.+.|++....+
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-G---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 3444555555555 56777777777776653 2 34455666666665 667777777777776554
No 225
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=69.27 E-value=9.5 Score=19.39 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=40.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcCHHhH
Q 038287 17 VKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDCFVY 84 (91)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 84 (91)
+..+.+.|++++|..+.+.. .-||...|-++.. .+.|....+..-+.++..+| .|....|
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGN-----PWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTC-----CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 45566788888888766555 3789988887744 57787777777666665544 3333333
No 226
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=67.07 E-value=11 Score=19.22 Aligned_cols=54 Identities=11% Similarity=0.087 Sum_probs=38.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 038287 16 LVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSG 76 (91)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g 76 (91)
.+..+.+.|++++|..+.+..- -||...|-++.. .+.|....+..-+.++..+|
T Consensus 46 R~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 46 RLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3456678899999888776653 789988887754 46777777766665665443
No 227
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=65.70 E-value=5.9 Score=23.90 Aligned_cols=44 Identities=11% Similarity=0.264 Sum_probs=30.8
Q ss_pred HHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 038287 32 FVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSG 76 (91)
Q Consensus 32 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g 76 (91)
+++++.+. |+.|..+++..++-.+.+.=.++.+..+|+.+...|
T Consensus 215 L~~hL~~~-~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 215 LFAHFKKN-NLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHT-TCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHc-CCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 34445443 777877777777777777777777788887776554
No 228
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=65.19 E-value=22 Score=22.07 Aligned_cols=12 Identities=0% Similarity=0.094 Sum_probs=4.6
Q ss_pred CChHHHHHHHHH
Q 038287 24 RSLTTVYNFVDQ 35 (91)
Q Consensus 24 ~~~~~a~~~~~~ 35 (91)
+++++|...|+.
T Consensus 93 ~~~~~A~~~~~~ 104 (490)
T 2xm6_A 93 QDYAQAVIWYKK 104 (490)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 333333333333
No 229
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=64.85 E-value=18 Score=21.84 Aligned_cols=47 Identities=9% Similarity=0.043 Sum_probs=36.4
Q ss_pred HHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCc
Q 038287 32 FVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKP 79 (91)
Q Consensus 32 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p 79 (91)
+++++.+. ++.|..+++..++-.+.+.=.++.+..+|+.+...|-..
T Consensus 231 L~~hL~~~-~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~ 277 (345)
T 2qfz_A 231 VHRHLDQH-EVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGF 277 (345)
T ss_dssp HHHHHHHT-TCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTT
T ss_pred HHHHHHHc-CCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCCh
Confidence 34444443 888888899999888888888999999999998776543
No 230
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=61.98 E-value=31 Score=22.73 Aligned_cols=65 Identities=5% Similarity=-0.007 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC------C--Ccc-----------HHhHHHHHHHHHccCCHHHHHHHH
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASLG------I--KPN-----------LVTYTILIDNVCNTKNLREAMRLV 69 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------~--~~~-----------~~~~~~~~~~~~~~~~~~~a~~~~ 69 (91)
+...|..+-..+.+.++++.|.++|..+..-.+ . .++ .--++....+|.+.|++++|.+++
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHH
Confidence 466788888888889999999988887632100 0 000 112334455666778888888887
Q ss_pred HHHH
Q 038287 70 SALS 73 (91)
Q Consensus 70 ~~m~ 73 (91)
.++.
T Consensus 760 ~~~~ 763 (814)
T 3mkq_A 760 IKSQ 763 (814)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 6664
No 231
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=56.86 E-value=16 Score=17.82 Aligned_cols=40 Identities=10% Similarity=0.032 Sum_probs=29.6
Q ss_pred CChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHH
Q 038287 24 RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRL 68 (91)
Q Consensus 24 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 68 (91)
...++|.++++.+..+ ....|...+++..+.++...|..+
T Consensus 51 t~~~~ar~Lld~L~~r-----G~~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 51 SRRDQARQLIIDLETR-----GSQALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp CHHHHHHHHHHHHTTS-----CTTHHHHHHHHHHTTTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHc-----ChHHHHHHHHHHHHcCcHHHHHHH
Confidence 4678888999988764 345688899988887876665443
No 232
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=56.51 E-value=22 Score=19.20 Aligned_cols=57 Identities=11% Similarity=0.083 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 9 DIFTYNFLVKCLCKC-----------RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 9 ~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
+...|+.+=.+|... +++++|...|+...+. .|+...|..-+.... ++.+++-..-.
T Consensus 79 ~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l---~P~~~~y~~al~~~~------ka~el~~~~~~ 146 (158)
T 1zu2_A 79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE---QPDNTHYLKSLEMTA------KAPQLHAEAYK 146 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH------THHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH------hCHhccCcccc
Confidence 445677777777765 4899999999998864 788777766666433 34455554443
No 233
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=55.43 E-value=24 Score=20.70 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=30.6
Q ss_pred HHHHHHhhCCCCccHHhHHHHHHHHHccC-CHHHHHHHHHHHHhCCCC
Q 038287 32 FVDQMRASLGIKPNLVTYTILIDNVCNTK-NLREAMRLVSALSDSGFK 78 (91)
Q Consensus 32 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~m~~~g~~ 78 (91)
+++++.+. ++ +..+++..++-.+.+.- .++.+.++|+.+...|..
T Consensus 190 L~~hL~~~-~i-~~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~~ 235 (292)
T 4hl4_A 190 LHDFMQSA-EV-GTIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPL 235 (292)
T ss_dssp HHHHHC-C-CC-CSGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHc-CC-CcchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCCc
Confidence 44555443 66 45777888888776665 488888888888777643
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=53.60 E-value=26 Score=19.18 Aligned_cols=57 Identities=12% Similarity=0.096 Sum_probs=42.2
Q ss_pred cCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcCH
Q 038287 23 CRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDC 81 (91)
Q Consensus 23 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 81 (91)
.+++++|..+|+.+... .-+. ...|....+-=.+.|++..|.+++.+....+-+|..
T Consensus 73 i~D~d~aR~vy~~a~~~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 73 IQEPDDARDYFQMARAN-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHCGGGCHHHHHHHHHH-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred hcCHHHHHHHHHHHHHH-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 37899999999999764 2222 555655555556778999999999999887777644
No 235
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=52.58 E-value=16 Score=22.68 Aligned_cols=44 Identities=2% Similarity=0.047 Sum_probs=34.4
Q ss_pred HHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 038287 32 FVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSG 76 (91)
Q Consensus 32 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g 76 (91)
+++++.+. ++.|..+.+..++-.+.+.=.++.+..+|+.+...|
T Consensus 218 L~~hL~~~-~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg 261 (396)
T 1fkm_A 218 LYNHFQNE-HVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSET 261 (396)
T ss_dssp HHHHHHHT-TCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCC
Confidence 34445443 888888889888888888888889999999887655
No 236
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=52.56 E-value=27 Score=19.07 Aligned_cols=53 Identities=13% Similarity=0.113 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhCCCCcc-HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcCH
Q 038287 28 TVYNFVDQMRASLGIKPN-LVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDC 81 (91)
Q Consensus 28 ~a~~~~~~m~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 81 (91)
++..+|..|..+ +|... +.-|......+-..|++.+|.++|..=++.+-+|-.
T Consensus 78 ~p~~if~~L~~~-~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQ-GIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHT-TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHC-CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 356788888776 66443 445777777788889999999999888888777753
No 237
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=52.27 E-value=46 Score=21.66 Aligned_cols=65 Identities=8% Similarity=0.040 Sum_probs=50.6
Q ss_pred cCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccC-CHHHHHHHHHHHHhC
Q 038287 8 PDIFTYNFLVKCLCKCR--SLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTK-NLREAMRLVSALSDS 75 (91)
Q Consensus 8 ~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~a~~~~~~m~~~ 75 (91)
.+..+|+-.--.+.+.+ +++++.++++.+.+. .| +...|+.--....+.+ ..+++.+.++++.+.
T Consensus 105 K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~ 173 (567)
T 1dce_A 105 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 173 (567)
T ss_dssp TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT
T ss_pred CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45567777777777778 679999999999875 34 6778888888888888 788888888887653
No 238
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=51.96 E-value=27 Score=18.84 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhCCCCcc-HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcC
Q 038287 28 TVYNFVDQMRASLGIKPN-LVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPD 80 (91)
Q Consensus 28 ~a~~~~~~m~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 80 (91)
++..+|..|..+ ||... +.=|......+-..|++.+|.+++..=++.+-+|-
T Consensus 83 dp~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 83 DLHQFFEFLYNH-GIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp CHHHHHHHHHTT-TTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 477888888876 66443 44577777888888999999999988888777774
No 239
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=51.26 E-value=24 Score=18.13 Aligned_cols=64 Identities=6% Similarity=-0.078 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhcC--C-hHHHH----HHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 11 FTYNFLVKCLCKCR--S-LTTVY----NFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 11 ~~~~~li~~~~~~~--~-~~~a~----~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
.++..++..+...- . .+++. -+|+++... .+.|+...--.-+..+...+++..|.+++..+...
T Consensus 20 ~~l~~~l~~~~~~~~k~~~~D~~KRL~~LfdkLn~~-~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 20 RPLEQALEDCHGHTKKQVCDDISRRLALLREQWAGG-KLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 45667777554321 1 23333 345566554 67777665555555677889999999999998754
No 240
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=51.20 E-value=6.7 Score=17.07 Aligned_cols=20 Identities=10% Similarity=0.328 Sum_probs=12.5
Q ss_pred CHHHHHHHHHHHHhCCCCcC
Q 038287 61 NLREAMRLVSALSDSGFKPD 80 (91)
Q Consensus 61 ~~~~a~~~~~~m~~~g~~p~ 80 (91)
++..|.++.+.+.+.|-.|+
T Consensus 8 Dv~RaiELle~lq~sgevp~ 27 (53)
T 1zl8_A 8 DVQRILELMEHVQKTGEVNN 27 (53)
T ss_dssp HHHHHHHHHHHHGGGSSSTH
T ss_pred HHHHHHHHHHHHHHcCCCCc
Confidence 45566777777766665554
No 241
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=50.95 E-value=32 Score=19.50 Aligned_cols=53 Identities=9% Similarity=0.067 Sum_probs=40.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCcc-----------------HHhHHHHHHHHHccCCHHHHHHHHHH
Q 038287 18 KCLCKCRSLTTVYNFVDQMRASLGIKPN-----------------LVTYTILIDNVCNTKNLREAMRLVSA 71 (91)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~a~~~~~~ 71 (91)
-+|-+.+++..|...++.+.+. .+..| .+-++.+...|.+.|..++|+..+..
T Consensus 70 LCy~klKdYkkA~~~le~il~~-kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 70 LCYKKKKDYKKAIKSLESILEG-KVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT-CSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-ccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
Confidence 3567889999999999998854 33322 34578888899999999999886643
No 242
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=49.18 E-value=6.4 Score=20.25 Aligned_cols=51 Identities=12% Similarity=0.227 Sum_probs=32.6
Q ss_pred CChHHHHHHHHHHHhhCCCC-ccHHhHHHHHHHHHc---cCCHHHHHHHHHHHHhCCCC
Q 038287 24 RSLTTVYNFVDQMRASLGIK-PNLVTYTILIDNVCN---TKNLREAMRLVSALSDSGFK 78 (91)
Q Consensus 24 ~~~~~a~~~~~~m~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~a~~~~~~m~~~g~~ 78 (91)
..+++|.+++..|++. -+. -....||..+...-+ .+.. .++|+.+++.++.
T Consensus 41 ~~y~ka~ecl~~~R~~-~i~~~ep~~yN~Fl~~Lk~~~~~~~l---~~FW~~iv~~~lg 95 (120)
T 1q2z_A 41 PYFMKSIDCIRAFREE-AIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGIT 95 (120)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHTTST---THHHHHHHHTTCC
T ss_pred chHHHHHHHHHHHHHH-HHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCcC
Confidence 4678999999999874 222 245568887776643 2333 4667777766654
No 243
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=47.93 E-value=28 Score=18.03 Aligned_cols=47 Identities=11% Similarity=0.166 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCC
Q 038287 14 NFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61 (91)
Q Consensus 14 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (91)
-.++..+...+.+-.|.++++.+.++ +...+..|----++.+.+.|-
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHK-GDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHCCC
Confidence 45566777766777888888888765 444444333333355555553
No 244
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=46.65 E-value=41 Score=19.52 Aligned_cols=49 Identities=10% Similarity=0.177 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHhhCCCCccHH-------hHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 26 LTTVYNFVDQMRASLGIKPNLV-------TYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 26 ~~~a~~~~~~m~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
++.|+.+|+.+.+... .++.. .--..+-.|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~-l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFT-LTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 5889999999987621 11111 1223445688999999999999988643
No 245
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=46.28 E-value=29 Score=17.69 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCC
Q 038287 14 NFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61 (91)
Q Consensus 14 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (91)
-.+++.+...+.+-.|.++++.++++ +...+..|---.++.+.+.|-
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~-~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRR-GENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCC
Confidence 35566666667777888999998775 444444443333455666553
No 246
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=44.74 E-value=21 Score=21.10 Aligned_cols=27 Identities=4% Similarity=0.033 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038287 12 TYNFLVKCLCKCRSLTTVYNFVDQMRA 38 (91)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 38 (91)
--|.++..+..+|.++.|.++++.++.
T Consensus 36 ~~n~l~R~FL~~gkl~AAr~l~~rlp~ 62 (270)
T 3cqc_A 36 QGNAIMRKFLASKKHEAAKEVFVKIPQ 62 (270)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHCCh
Confidence 357888999999999999999998654
No 247
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=44.32 E-value=43 Score=19.96 Aligned_cols=50 Identities=10% Similarity=0.064 Sum_probs=39.6
Q ss_pred CChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 24 RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 24 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
.++.....++..|.....-.|+..-.-.++++|.+..+-..|.+..+.-.
T Consensus 187 eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~L 236 (268)
T 2fv2_A 187 ERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCL 236 (268)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 45666667788888765568899999999999999999888888777653
No 248
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=43.77 E-value=37 Score=18.17 Aligned_cols=48 Identities=8% Similarity=0.128 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 27 TTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 27 ~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
+.+.+-+.+..++.|++++.- =-.+++...+.+..-.|.++++.+...
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~ 61 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQA 61 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhh
Confidence 344444444333337776553 345556666666666778888887655
No 249
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=43.41 E-value=32 Score=18.60 Aligned_cols=61 Identities=11% Similarity=0.096 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccC-CHHHHHHHHHHHHh
Q 038287 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK-NLREAMRLVSALSD 74 (91)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~m~~ 74 (91)
...++|.=|...++.++|...++++... ... ..++-..+-.+.-+.. ..+.+.+++..+..
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p-~~~-~~~V~~~I~~aldrk~~ere~~s~LL~~L~~ 73 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLG-EMK-SGVPVLAVSLALEGKASHREMTSKLLSDLCG 73 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCS-GGG-GHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCc-ccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3567888899999999999999998531 111 2223333333333332 23345677777643
No 250
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=43.25 E-value=23 Score=15.72 Aligned_cols=47 Identities=13% Similarity=0.194 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhCCCCccHHhHHHHHHHH-HccCCHHHHHHHHHHHHhCCCCcC
Q 038287 27 TTVYNFVDQMRASLGIKPNLVTYTILIDNV-CNTKNLREAMRLVSALSDSGFKPD 80 (91)
Q Consensus 27 ~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~m~~~g~~p~ 80 (91)
++.+..+..|- |+.. -..+-..+ ...|+++.|++.+-+|...+.+|+
T Consensus 10 ee~l~~L~emF------P~ld-~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 10 EEDLKAIQDMF------PNMD-QEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp HHHHHHHHHHC------SSSC-HHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HHHHHHHHHHC------CCCC-HHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCC
Confidence 45555666663 3332 22222333 344688999988888877777775
No 251
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=42.35 E-value=36 Score=17.66 Aligned_cols=69 Identities=16% Similarity=0.141 Sum_probs=44.3
Q ss_pred cCHHHHHHHHHHHHhcCChHH---HHHHHHHHHhhCCCCc--cHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcC
Q 038287 8 PDIFTYNFLVKCLCKCRSLTT---VYNFVDQMRASLGIKP--NLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPD 80 (91)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 80 (91)
++..+--.+--++.+.....+ ++.+++.+... + .| .....-.+.-++.+.|+..+|.+.++.+.+. +|+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~--eP~ 106 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--EPQ 106 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCC
Confidence 333343344445666665555 88899988764 1 24 3333444556788999999999999988753 454
No 252
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=41.74 E-value=71 Score=20.81 Aligned_cols=63 Identities=11% Similarity=0.127 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccC--CHHHHHHHHHHHHhC
Q 038287 10 IFTYNFLVKCLCKCRS----------LTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTK--NLREAMRLVSALSDS 75 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~a~~~~~~m~~~ 75 (91)
...|+..=..+.+.++ ++++..+++.+.+. .| +..+|+.--....+.+ +++++.+.++++.+.
T Consensus 63 ~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~ 138 (567)
T 1dce_A 63 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA 138 (567)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh
Confidence 3457665555555555 89999999999875 45 5778888888888999 779999999999754
No 253
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=40.35 E-value=53 Score=18.95 Aligned_cols=53 Identities=9% Similarity=0.007 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhCCCCcc-HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcC
Q 038287 27 TTVYNFVDQMRASLGIKPN-LVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPD 80 (91)
Q Consensus 27 ~~a~~~~~~m~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 80 (91)
+++..+|..|..+ ||... +.=|-.....+-..|++.+|.++|..=++.+-+|-
T Consensus 131 ~~p~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHH-HIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHT-TCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHC-CcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4566788888776 66443 44477777778888999999999988777666663
No 254
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=39.61 E-value=7.1 Score=21.05 Aligned_cols=50 Identities=12% Similarity=0.238 Sum_probs=28.6
Q ss_pred ChHHHHHHHHHHHhhCCCC-ccHHhHHHHHHHHHc---cCCHHHHHHHHHHHHhCCCC
Q 038287 25 SLTTVYNFVDQMRASLGIK-PNLVTYTILIDNVCN---TKNLREAMRLVSALSDSGFK 78 (91)
Q Consensus 25 ~~~~a~~~~~~m~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~a~~~~~~m~~~g~~ 78 (91)
.+++|.+++..|++. -+. -....||..+...-+ .+.. .++|+.++..++.
T Consensus 73 ~y~KA~ecL~~lR~~-~i~~~ep~~yN~Fl~~LK~~l~~~~l---~~FW~~Iv~~~lg 126 (152)
T 1rw2_A 73 YFMKSIDCIRAFREE-AIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGIT 126 (152)
T ss_dssp HHHHHHHHHHHHHHH-HHHHTCSHHHHHHHHHHHHHHHHSCC---HHHHHHHHHHTCS
T ss_pred hHHHHHHHHHHHHHH-HHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCcc
Confidence 567888888888764 121 134457776665542 2332 5566666655543
No 255
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=39.02 E-value=43 Score=17.58 Aligned_cols=21 Identities=0% Similarity=0.047 Sum_probs=9.1
Q ss_pred HHHHccCCHHHHHHHHHHHHh
Q 038287 54 DNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 54 ~~~~~~~~~~~a~~~~~~m~~ 74 (91)
+.....+..-.|.++++.+.+
T Consensus 34 ~~l~~~~~~~sa~ei~~~l~~ 54 (150)
T 2xig_A 34 SVLYRSGTHLSPEEITHSIRQ 54 (150)
T ss_dssp HHHHHCSSCBCHHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHH
Confidence 333333334444555555543
No 256
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=38.70 E-value=43 Score=17.43 Aligned_cols=11 Identities=27% Similarity=0.229 Sum_probs=4.8
Q ss_pred HHHHHHHHHHh
Q 038287 64 EAMRLVSALSD 74 (91)
Q Consensus 64 ~a~~~~~~m~~ 74 (91)
.|.++++.+.+
T Consensus 39 sa~ei~~~l~~ 49 (145)
T 2fe3_A 39 TADDIYKALEG 49 (145)
T ss_dssp CHHHHHHHHGG
T ss_pred CHHHHHHHHHH
Confidence 34444444433
No 257
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A
Probab=38.40 E-value=25 Score=19.39 Aligned_cols=29 Identities=10% Similarity=0.126 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhCCCCccHHhHHHHHHHH
Q 038287 27 TTVYNFVDQMRASLGIKPNLVTYTILIDNV 56 (91)
Q Consensus 27 ~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~ 56 (91)
+++...|..|....+|.|+. +|...+..+
T Consensus 5 ee~~~~F~~lL~~~~V~~~~-~We~~~~~i 33 (190)
T 3hfh_A 5 SARMXQFXDMLLERGVSAFS-TWEXELHXI 33 (190)
T ss_dssp CHHHHHHHHHHHHTTCCSSS-CHHHHGGGT
T ss_pred HHHHHHHHHHHHHcCcCCCC-chhhhhhhh
Confidence 57788888888776777766 577766543
No 258
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=38.21 E-value=42 Score=17.21 Aligned_cols=25 Identities=4% Similarity=0.050 Sum_probs=13.6
Q ss_pred HHHHHHHhcC-ChHHHHHHHHHHHhh
Q 038287 15 FLVKCLCKCR-SLTTVYNFVDQMRAS 39 (91)
Q Consensus 15 ~li~~~~~~~-~~~~a~~~~~~m~~~ 39 (91)
.++..+...+ .+-.|.++++.+++.
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~ 47 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEA 47 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhh
Confidence 3444555444 455666666666654
No 259
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=37.96 E-value=81 Score=21.20 Aligned_cols=63 Identities=13% Similarity=0.132 Sum_probs=42.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccC-----C----HHHHHHHHHHHHhCCCCcC
Q 038287 17 VKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK-----N----LREAMRLVSALSDSGFKPD 80 (91)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~a~~~~~~m~~~g~~p~ 80 (91)
-+.|...-..++....+++++.+ ....+...|.+++.....-- - +...-.+|+.|.+.++.++
T Consensus 456 qkmY~~eisI~~iV~~L~~~K~S-~~~rdqdvFaCMIh~LFdEyrff~~YP~~eL~iTA~LFG~LI~~~Ll~~ 527 (603)
T 4b8b_A 456 QKMYSGELAIKDVIELLRRLRDS-DLPRDQEVFTCITHAVIAESTFFQDYPLDALATTSVLFGSMILFQLLRG 527 (603)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHcCCCCHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcccCc
Confidence 35666666788888899998875 33447778888888766431 1 2224578888888776643
No 260
>4ewi_A Nacht, LRR and PYD domains-containing protein 4; NLR proteins, death domain, pyrin domain, NLRP4, ASC, innate system, inflammasome, apoptosis; 2.28A {Homo sapiens}
Probab=37.01 E-value=18 Score=18.37 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=11.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHH
Q 038287 50 TILIDNVCNTKNLREAMRLVSAL 72 (91)
Q Consensus 50 ~~~~~~~~~~~~~~~a~~~~~~m 72 (91)
+.++..|+...-++.+.++|+.|
T Consensus 59 ~lLv~~y~~~~A~~vtl~if~~m 81 (113)
T 4ewi_A 59 NLLIKHYEEQQAWNITLRIFQKM 81 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcChhHHHHHHHHHHHHh
Confidence 44444455555555555555555
No 261
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=35.98 E-value=43 Score=16.62 Aligned_cols=26 Identities=4% Similarity=-0.105 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHH
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQM 36 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m 36 (91)
+.+.-.-..+.+.|.+++|++..+..
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 45666778899999999998887754
No 262
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=35.54 E-value=79 Score=19.57 Aligned_cols=67 Identities=10% Similarity=0.131 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCC--HHHHHHHHHHHHhCCCCcC
Q 038287 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN--LREAMRLVSALSDSGFKPD 80 (91)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~~~~m~~~g~~p~ 80 (91)
..+.++.=|...++.++|.+.++++..- . .-..++..++..+.-+.++ .+...+++..+...|+-..
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p-~-fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVP-H-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCT-T-CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCC-c-chHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 4678899999999999999999999631 1 1134456666666666443 4557788888887775543
No 263
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=35.14 E-value=50 Score=17.21 Aligned_cols=56 Identities=16% Similarity=0.212 Sum_probs=33.7
Q ss_pred HHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 038287 19 CLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSG 76 (91)
Q Consensus 19 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g 76 (91)
.|...++.+.+.+.++-+-+...-.|....=.+.+.++++ ++.+|.+.+++-.+.|
T Consensus 49 lyf~~~n~~~m~~~L~pLh~~l~~~PeT~~E~sF~~~fG~--~L~~A~~~~~~y~~t~ 104 (126)
T 2npu_A 49 LYFGERNVKGMFEVLEPLHAMMERGPQTLKETSFNQAYGR--DLMEAQEWCRKYMKSG 104 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHTC
T ss_pred HHhcccCHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHhH--HHHHHHHHHHHHHHhC
Confidence 3446678888888876552211114655555666666665 5667777777765443
No 264
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=35.14 E-value=52 Score=17.37 Aligned_cols=55 Identities=9% Similarity=-0.007 Sum_probs=39.7
Q ss_pred CChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcCH
Q 038287 24 RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDC 81 (91)
Q Consensus 24 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 81 (91)
.+...++.+++.+.+. +..-....+--+.-++.+.|+...|.+..+.+.+ ++|+.
T Consensus 57 ~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 57 NDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp HHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred HHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 3566889999988875 3212355566667789999999999999988865 35553
No 265
>2hm2_Q ASC2, pyrin-only protein 1, PAAD-only; pyrin domain, six helix bundle, apoptosis; NMR {Homo sapiens}
Probab=35.11 E-value=21 Score=17.12 Aligned_cols=26 Identities=4% Similarity=0.013 Sum_probs=19.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 49 YTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 49 ~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
-+.++..|+...-++.+.++|+.|..
T Consensus 53 a~lLv~~y~~~~A~~vt~~if~~mn~ 78 (89)
T 2hm2_Q 53 TDKLVASYYEDYAAELVVAVLRDMRM 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHcCH
Confidence 45567777777788888889988853
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=35.10 E-value=63 Score=18.33 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=44.5
Q ss_pred cCChHHHHHHHHHHHhhCCCCcc-HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcC
Q 038287 23 CRSLTTVYNFVDQMRASLGIKPN-LVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPD 80 (91)
Q Consensus 23 ~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 80 (91)
++...++..+|..|..+ ||... +.=|-.....+-..|++.+|.+++..=++.+-+|-
T Consensus 92 ~~~~~~p~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNK-GIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHH-TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 34466889999999887 66543 44577788888889999999999988888777774
No 267
>2cwo_A P21, RNA silencing suppressor; octamer, ring, head-TO-head, tail-TO-tail, all alpha helical binding protein, RNA binding protein; 3.30A {Beet yellows virus}
Probab=34.20 E-value=36 Score=18.07 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhcCCh
Q 038287 10 IFTYNFLVKCLCKCRSL 26 (91)
Q Consensus 10 ~~~~~~li~~~~~~~~~ 26 (91)
..|.|++++-||+...+
T Consensus 123 s~tlnafl~eycri~gl 139 (197)
T 2cwo_A 123 SDTLNAFLEEYCRITGL 139 (197)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 46889999999987443
No 268
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=33.64 E-value=55 Score=17.17 Aligned_cols=25 Identities=4% Similarity=0.020 Sum_probs=13.6
Q ss_pred HHHHHHHhcC-ChHHHHHHHHHHHhh
Q 038287 15 FLVKCLCKCR-SLTTVYNFVDQMRAS 39 (91)
Q Consensus 15 ~li~~~~~~~-~~~~a~~~~~~m~~~ 39 (91)
.++..+...+ .+-.|.++++.+.+.
T Consensus 21 ~Il~~L~~~~~~h~sa~ei~~~l~~~ 46 (150)
T 2w57_A 21 KILEVLQQPECQHISAEELYKKLIDL 46 (150)
T ss_dssp HHHHHHTSGGGSSEEHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHh
Confidence 3444444444 455666666666554
No 269
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=32.94 E-value=95 Score=19.72 Aligned_cols=15 Identities=27% Similarity=0.177 Sum_probs=8.4
Q ss_pred ChHHHHHHHHHHHhh
Q 038287 25 SLTTVYNFVDQMRAS 39 (91)
Q Consensus 25 ~~~~a~~~~~~m~~~ 39 (91)
+++.|..+|+...+.
T Consensus 335 d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 335 SRATPYNIFSSGLLK 349 (493)
T ss_dssp CSHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHH
Confidence 456666666655543
No 270
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=32.41 E-value=32 Score=20.82 Aligned_cols=64 Identities=6% Similarity=0.055 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccC-CHHHHHHHHHHHHhCCCC
Q 038287 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTK-NLREAMRLVSALSDSGFK 78 (91)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~m~~~g~~ 78 (91)
...++.=|...|+.++|.+.++++... .. ...++..++..+.-+.. ..+.+..++..+.+.|+-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p-~~-~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASP-SL-LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCG-GG-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc-cc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 567888899999999999999988531 11 12333444444443322 234456777777766543
No 271
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=32.26 E-value=61 Score=17.33 Aligned_cols=55 Identities=9% Similarity=-0.007 Sum_probs=38.5
Q ss_pred CChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcCH
Q 038287 24 RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSGFKPDC 81 (91)
Q Consensus 24 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 81 (91)
.+..+++.+++.+... ...-.....--+.-++.+.|+..+|.+..+.+.+. +|+.
T Consensus 56 ~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n 110 (144)
T 1y8m_A 56 NDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 110 (144)
T ss_dssp HHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred HHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 3566888899988775 22223444445566799999999999988888763 5543
No 272
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=31.82 E-value=52 Score=16.34 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=13.1
Q ss_pred HHHHHHHHHhCCCCcCHH
Q 038287 65 AMRLVSALSDSGFKPDCF 82 (91)
Q Consensus 65 a~~~~~~m~~~g~~p~~~ 82 (91)
..+..++++..|+.||..
T Consensus 22 ieekinELk~dG~ePDIi 39 (103)
T 2pk8_A 22 IEEKMNELKMDGFNPDII 39 (103)
T ss_dssp HHHHHHHHHHTTCCCCEE
T ss_pred HHHHHHHHHhcCCCCCeE
Confidence 345566777889999964
No 273
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=31.60 E-value=1e+02 Score=20.19 Aligned_cols=34 Identities=6% Similarity=-0.045 Sum_probs=22.0
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038287 5 QLPPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRA 38 (91)
Q Consensus 5 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 38 (91)
|++-....|-.-++.+...|++++|.++-..-+.
T Consensus 356 ~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~ 389 (494)
T 1bpo_A 356 NLAGAEELFARKFNALFAQGNYSEAAKVAANAPK 389 (494)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc
Confidence 3443334566667777888888888877665543
No 274
>2km6_A Nacht, LRR and PYD domains-containing protein 7; NLRP7, pyrin domain, innate immune system, NALP, ATP-binding mutation, leucine-rich repeat; NMR {Homo sapiens}
Probab=30.72 E-value=14 Score=18.57 Aligned_cols=27 Identities=7% Similarity=0.154 Sum_probs=19.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 49 YTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 49 ~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
-+.++..|+...-++.+.++|+.|...
T Consensus 57 a~lLv~~y~e~~A~~vt~~if~~mn~~ 83 (106)
T 2km6_A 57 AEILVNTSSENWIRNATVNILEEMNLT 83 (106)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHcCHH
Confidence 455666666667788888888888643
No 275
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=29.90 E-value=64 Score=16.79 Aligned_cols=23 Identities=9% Similarity=0.200 Sum_probs=12.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhh
Q 038287 16 LVKCLCKCRSLTTVYNFVDQMRAS 39 (91)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~m~~~ 39 (91)
++..+...+ .-.|.++++.+.+.
T Consensus 24 Il~~l~~~~-h~ta~ei~~~l~~~ 46 (145)
T 3eyy_A 24 VLEAVDTLE-HATPDDILGEVRKT 46 (145)
T ss_dssp HHHHHHHHS-SBCHHHHHHHHHTT
T ss_pred HHHHHHhcC-CCCHHHHHHHHHhh
Confidence 334444444 45666666666654
No 276
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=29.80 E-value=47 Score=22.09 Aligned_cols=62 Identities=3% Similarity=0.008 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcC--ChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 13 YNFLVKCLCKCR--SLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 13 ~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
|..=|.....++ +.+.......++..+..+.. ...--.++..|.+.|..++|.++.+.+-..
T Consensus 482 W~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~T-ndd~e~vL~iCa~l~L~~~ar~I~k~~g~k 545 (570)
T 3f3f_C 482 WPVAIGLIALSATGTRSAKKMVIAELLPHYPFVT-NDDIEWMLSICVEWRLPEIAKEIYTTLGNQ 545 (570)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCS-HHHHHHHHHHHHHHTCHHHHHHHHHHHHC-
T ss_pred hhHHHHHHhcCCccchhHHHHHHHHHhccCCCCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 444455555553 45666777777776643333 445778889999999999999999988644
No 277
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=29.67 E-value=51 Score=15.62 Aligned_cols=35 Identities=3% Similarity=0.021 Sum_probs=19.9
Q ss_pred CChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHH
Q 038287 24 RSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLR 63 (91)
Q Consensus 24 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (91)
...++|..+++.+..+ ....|...+++..+.+...
T Consensus 50 t~~~kar~Lld~l~~k-----G~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 50 TQQQRAAMLIKMILKK-----DNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp SHHHHHHHHHHHHTTS-----CHHHHHHHHHHHHHTTCHH
T ss_pred ChHHHHHHHHHHHHHc-----CHHHHHHHHHHHHHcCHHH
Confidence 3456666666666533 3455666666666655433
No 278
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=28.75 E-value=96 Score=18.45 Aligned_cols=63 Identities=11% Similarity=0.101 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHhcCChH--HHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCC------HHHHHHHHHHHH
Q 038287 9 DIFTYNFLVKCLCKCRSLT--TVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN------LREAMRLVSALS 73 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~m~ 73 (91)
+...|+-.--.+.+.+.++ +++++++.+.+. . .-|...|+.--....+.+. ++++.+.+++..
T Consensus 143 ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI 213 (306)
T 3dra_A 143 NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-D-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKI 213 (306)
T ss_dssp CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHH
Confidence 4455555555555555555 666666666553 1 1245555555555555444 555555555554
No 279
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=28.30 E-value=63 Score=16.21 Aligned_cols=20 Identities=5% Similarity=0.049 Sum_probs=15.8
Q ss_pred HHhcCChHHHHHHHHHHHhh
Q 038287 20 LCKCRSLTTVYNFVDQMRAS 39 (91)
Q Consensus 20 ~~~~~~~~~a~~~~~~m~~~ 39 (91)
.++.|++++|.+.+++-.+.
T Consensus 30 ~Ak~g~fe~A~~~l~eA~~~ 49 (105)
T 2e2a_A 30 AAENGDFAKADSLVVEAGSC 49 (105)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHH
Confidence 46789999999998876553
No 280
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=28.08 E-value=1e+02 Score=18.56 Aligned_cols=66 Identities=12% Similarity=0.156 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCC--HHHHHHHHHHHHhCCCCc
Q 038287 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN--LREAMRLVSALSDSGFKP 79 (91)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~~~~m~~~g~~p 79 (91)
..+.++.=|...++.++|.+.++++..- . --..++..++..+.-+.++ .+...+++..+...|+-+
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p-~-f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVP-H-FHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCG-G-GHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCC-c-chHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 3567888898899999999999999521 1 1123445566666666433 445668888887666443
No 281
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=28.05 E-value=1e+02 Score=18.45 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=26.8
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038287 7 PPDIFTYNFLVKCLCKCRSLTTVYNFVDQMRA 38 (91)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 38 (91)
|.|...-..|++-+|-.|+|+.|..-++...+
T Consensus 28 P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 28 PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34667778899999999999999998887765
No 282
>3qf2_A Nacht, LRR and PYD domains-containing protein 3; six helix bundle, apoptosis; 1.70A {Homo sapiens}
Probab=27.34 E-value=24 Score=17.78 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=12.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHH
Q 038287 50 TILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 50 ~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
+.++..|+...-++.+.++|++|.
T Consensus 54 ~lLv~~y~~~~A~~vt~~if~~mn 77 (110)
T 3qf2_A 54 TLMIDFNGEEKAWAMAVWIFAAIN 77 (110)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCHHHHHHHHHHHHHHcC
Confidence 344445555555666666666553
No 283
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=27.33 E-value=66 Score=16.09 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=15.7
Q ss_pred HHhcCChHHHHHHHHHHHhh
Q 038287 20 LCKCRSLTTVYNFVDQMRAS 39 (91)
Q Consensus 20 ~~~~~~~~~a~~~~~~m~~~ 39 (91)
.++.|++++|.+.+++-.+.
T Consensus 28 ~Ak~g~fe~A~~~l~eA~~~ 47 (103)
T 1wcr_A 28 QAKQGDFAAAKAMMDQSRMA 47 (103)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHH
Confidence 46889999999998876553
No 284
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=27.23 E-value=82 Score=17.14 Aligned_cols=60 Identities=3% Similarity=-0.118 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhCCCCc--cHHhHHHHHH-HH-----HccCCHHHHHHHHHHHHh
Q 038287 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKP--NLVTYTILID-NV-----CNTKNLREAMRLVSALSD 74 (91)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~~~~~-~~-----~~~~~~~~a~~~~~~m~~ 74 (91)
|..-+..+.. |++-+|-++|+..-.. .-.+ ....|..+|+ .. .+.|+++.|..++++...
T Consensus 36 ~~~~i~lFn~-g~yfeaHEvLEe~W~~-~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNS-GEFHESHDCFEDEWYN-YGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHTTT-TCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCchHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4444444444 9999999999999875 3344 4556777777 22 246899999999988864
No 285
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=26.17 E-value=97 Score=17.75 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHhhCCCCccHH------hHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 26 LTTVYNFVDQMRASLGIKPNLV------TYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 26 ~~~a~~~~~~m~~~~~~~~~~~------~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
++.|+.+|+.+... .++.. .--..+-.|.+.|.+++|.+++++.-
T Consensus 94 LESAl~v~~~I~~e---~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 94 LESALMIWGSIEKE---HDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHHHHTTSCSC---CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHh
Confidence 57888888887654 22111 12234456889999999999999964
No 286
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=25.74 E-value=1.2e+02 Score=18.44 Aligned_cols=65 Identities=8% Similarity=0.030 Sum_probs=49.7
Q ss_pred cCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhhCCCCc-cHHhHHHHHHHHHccCC-HHHHHHHHHHHHhC
Q 038287 8 PDIFTYNFLVKCLCKCR--SLTTVYNFVDQMRASLGIKP-NLVTYTILIDNVCNTKN-LREAMRLVSALSDS 75 (91)
Q Consensus 8 ~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~a~~~~~~m~~~ 75 (91)
.+..+|+-.--.+.+.+ ++++++.+++.+.+. .| |...|+---......|. .+++.+.++++...
T Consensus 106 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~---dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~ 174 (331)
T 3dss_A 106 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 174 (331)
T ss_dssp TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 46667777766666666 488999999999875 34 67788888777788887 58888888888754
No 287
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=24.64 E-value=72 Score=15.64 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=29.5
Q ss_pred HHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038287 20 LCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDS 75 (91)
Q Consensus 20 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 75 (91)
|...++.+.+...++-+-+...-.|.+..=.+....|++ ++.+|.+...+-.+.
T Consensus 20 ~f~~~n~~~m~~~L~pLh~~l~~~peT~~E~sF~~~fG~--~L~~A~~~~~~y~~t 73 (94)
T 3fap_B 20 YFGERNVKGMFEVLEPLHAMMERGPQTLKETSFNQAYGR--DLMEAQEWCRKYMKS 73 (94)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHCCCSHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHh
Confidence 556677888777766554321113444433444445554 566666666665443
No 288
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=24.59 E-value=1.3e+02 Score=20.48 Aligned_cols=45 Identities=11% Similarity=0.115 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHcc
Q 038287 13 YNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNT 59 (91)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 59 (91)
-.++|=.+.|+|+.++|.++.++.... ++--...|...+..+...
T Consensus 155 ~Wa~IyY~LR~G~~~~A~e~~~~~~~~--~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 155 IWALIFYLLRAGLIKEALQVLVENKAN--IKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTGGG--C-----CHHHHHHHC---
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh--HhhhhHHHHHHHHHHHhC
Confidence 467777888999999999999887643 221224566677777643
No 289
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=24.25 E-value=91 Score=18.59 Aligned_cols=12 Identities=25% Similarity=0.274 Sum_probs=5.4
Q ss_pred HHHHHHHhCCCC
Q 038287 67 RLVSALSDSGFK 78 (91)
Q Consensus 67 ~~~~~m~~~g~~ 78 (91)
+++.++.+.|+.
T Consensus 188 ~L~~HL~~~~i~ 199 (294)
T 3qwl_A 188 RLLTHLRMCSAA 199 (294)
T ss_dssp HHHHHHHHTTCG
T ss_pred HHHHHHHHCCCC
Confidence 344444444443
No 290
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=24.03 E-value=89 Score=16.46 Aligned_cols=27 Identities=4% Similarity=-0.036 Sum_probs=16.8
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 46 LVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
..++.-+++...+.|-+... +.|-.|.
T Consensus 77 ~~s~rd~~r~a~~~GlI~d~-~~w~~m~ 103 (146)
T 1jog_A 77 AYGFKDILREALRFGLIGDM-SKWVAYR 103 (146)
T ss_dssp SCCHHHHHHHHHHTTSCSCH-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCcH-HHHHHHH
Confidence 55666677777777766555 4555554
No 291
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=23.90 E-value=64 Score=14.75 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHc
Q 038287 12 TYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCN 58 (91)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 58 (91)
.++.+++.++...-.++++..+++..++ | ..+..+|---.+..++
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~-g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHR-G-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc-C-CCCHHHHHHHHHHHHH
Confidence 4678888899888899999999998887 3 3344445444444443
No 292
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=23.72 E-value=86 Score=20.10 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRAS 39 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 39 (91)
+..|.++..|.+.+.+..+..++..+...
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~k~i~~~ 205 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIFKNFQPK 205 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 56788999999999999999999999876
No 293
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=23.52 E-value=1.3e+02 Score=18.24 Aligned_cols=63 Identities=6% Similarity=0.032 Sum_probs=42.8
Q ss_pred HHHHHHHHH-HHHhc--CC------hHHHHHHHHHHHhhCCCCcc---HHhHHHHHHHHHcc-----CCHHHHHHHHHHH
Q 038287 10 IFTYNFLVK-CLCKC--RS------LTTVYNFVDQMRASLGIKPN---LVTYTILIDNVCNT-----KNLREAMRLVSAL 72 (91)
Q Consensus 10 ~~~~~~li~-~~~~~--~~------~~~a~~~~~~m~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~a~~~~~~m 72 (91)
...|..++. .++.. ++ ...|...+++..+ +.|+ ...|..+-..|.+. |+.++|.+.|++.
T Consensus 154 ~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA 230 (301)
T 3u64_A 154 TLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL 230 (301)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH
Confidence 345666553 44432 33 3555555665554 4676 66788888888885 9999999999999
Q ss_pred HhC
Q 038287 73 SDS 75 (91)
Q Consensus 73 ~~~ 75 (91)
...
T Consensus 231 L~L 233 (301)
T 3u64_A 231 TRY 233 (301)
T ss_dssp HHH
T ss_pred HHh
Confidence 753
No 294
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=22.79 E-value=1.2e+02 Score=17.36 Aligned_cols=47 Identities=2% Similarity=0.097 Sum_probs=35.3
Q ss_pred HHHHHHHHH---hcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCC
Q 038287 13 YNFLVKCLC---KCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKN 61 (91)
Q Consensus 13 ~~~li~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (91)
+-.+|+++- +-++++.|+-.+..|.+. | .|....=-.++-++-.-|.
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~-G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEA-G-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-T-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhhccC
Confidence 344566664 458999999999999997 7 8877777777777777663
No 295
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=22.05 E-value=73 Score=14.77 Aligned_cols=54 Identities=6% Similarity=-0.107 Sum_probs=33.4
Q ss_pred HhcCChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 038287 21 CKCRSLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSD 74 (91)
Q Consensus 21 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 74 (91)
......++...+|+.+.....=..+..-+..++...+..-..+++.++++.+-.
T Consensus 23 ~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~D~ 76 (94)
T 2kz2_A 23 KDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 76 (94)
T ss_dssp CCCSCHHHHHHHHHHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHHHHHCT
T ss_pred cCCCHHHHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 344566777888888765422234445556666666554466777888887743
No 296
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=22.02 E-value=82 Score=15.34 Aligned_cols=21 Identities=0% Similarity=-0.238 Sum_probs=11.9
Q ss_pred HHHHHHHHHhCCCCcCHHhHh
Q 038287 65 AMRLVSALSDSGFKPDCFVYN 85 (91)
Q Consensus 65 a~~~~~~m~~~g~~p~~~~~~ 85 (91)
+.+.|.++.+.+..|+...+-
T Consensus 36 a~~ay~rL~~~~~~~c~~~L~ 56 (93)
T 3bqs_A 36 SKEAFLRIWENDSSVCMSELY 56 (93)
T ss_dssp HHHHHHHHHTTCTTCCHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHH
Confidence 456666666556666554443
No 297
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=21.93 E-value=1.8e+02 Score=19.19 Aligned_cols=46 Identities=11% Similarity=0.180 Sum_probs=35.5
Q ss_pred ChHHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 038287 25 SLTTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALSDSG 76 (91)
Q Consensus 25 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g 76 (91)
.-+++..+|+++.++ .+-|..+++..+..|..+...++.-++.+.|
T Consensus 517 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (591)
T 3i3l_A 517 MDDEARQIFQDLAEE------EFGYKTLVKRLGAVGRQELSTQIVVRLMEAG 562 (591)
T ss_dssp CCHHHHHHHHHHHHH------CCCHHHHHHHHHTTTCTTTHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHH------hhhHHHHHHHHhhhhhhhhhHHHHHHHHHhc
Confidence 347888999999875 5679999999999998887776665555544
No 298
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=21.81 E-value=86 Score=15.52 Aligned_cols=44 Identities=14% Similarity=0.004 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhCCCCccHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 27 TTVYNFVDQMRASLGIKPNLVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 27 ~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
+++..++..=..+.| ..-|...|+.++.+.+.-+.|..+.....
T Consensus 58 eq~~~mL~~W~~r~G---~~AT~~~L~~AL~~~~~~dvae~l~~~~~ 101 (110)
T 1wxp_A 58 MRAKQLLVAWQDQEG---VHATPENLINALNKSGLSDLAESLTNDNE 101 (110)
T ss_dssp HHHHHHHHHHHHHHG---GGCCHHHHHHHHHHTTCHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHhhC---cCcHHHHHHHHHHHcCcHHHHHHHHHHhh
Confidence 455555555443311 23578899999999998887777654443
No 299
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=21.81 E-value=1.5e+02 Score=18.29 Aligned_cols=63 Identities=21% Similarity=0.215 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCcc----HHhHHHHHHHHHccCC-HHHHHHHHHHHHhCCCC
Q 038287 11 FTYNFLVKCLCKCRSLTTVYNFVDQMRASLGIKPN----LVTYTILIDNVCNTKN-LREAMRLVSALSDSGFK 78 (91)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~a~~~~~~m~~~g~~ 78 (91)
....++|.=|...++.++|...++++.. |+ .+.+..+..+.-+... .+.+..++..+...++-
T Consensus 13 k~~~~ii~EY~~~~D~~Ea~~~l~eL~~-----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~l 80 (364)
T 3l6a_A 13 KLTETVVTEYLNSGNANEAVNGVREMRA-----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIA 80 (364)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTC-----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCC-----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCC
Confidence 3467889999999999999999999952 32 3455555555544322 34456777777766543
No 300
>1x87_A Urocanase protein; structural genomics, protein STR initiative, MCSG, PSI, midwest center for structural genomi; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1
Probab=21.77 E-value=43 Score=22.03 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhCCCCcCHHh
Q 038287 63 REAMRLVSALSDSGFKPDCFV 83 (91)
Q Consensus 63 ~~a~~~~~~m~~~g~~p~~~~ 83 (91)
-.+.++|.++.++|+.||..|
T Consensus 237 GNaadv~~~l~~~~i~~Dlvt 257 (551)
T 1x87_A 237 GNAAEVLPRLVETGFVPDVLT 257 (551)
T ss_dssp SCHHHHHHHHHHTTCCCSEEC
T ss_pred ccHHHHHHHHHHCCCCCCCCC
Confidence 356789999999999999765
No 301
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=21.50 E-value=72 Score=15.98 Aligned_cols=27 Identities=11% Similarity=-0.041 Sum_probs=13.6
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 038287 46 LVTYTILIDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 73 (91)
..++.-.++...+.|-++.. +.|-.|.
T Consensus 53 ~~s~rd~~r~a~~~glI~~~-~~w~~m~ 79 (119)
T 1wty_A 53 ARSPRAAIRGAFQVGLLPED-PFWLEML 79 (119)
T ss_dssp CSSHHHHHHHHHHHTSSCCC-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCcH-HHHHHHH
Confidence 44455555555666554444 3444443
No 302
>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha}
Probab=21.22 E-value=33 Score=20.40 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHhHh
Q 038287 61 NLREAMRLVSALSDSGFKPDCFVYN 85 (91)
Q Consensus 61 ~~~~a~~~~~~m~~~g~~p~~~~~~ 85 (91)
.++.+.++++.|.+.|++|....|.
T Consensus 123 ~~~~~~~~~~~~~e~Gi~pE~e~fd 147 (275)
T 3no5_A 123 PPELVDWLAAEMKTYGIKPEVEAFD 147 (275)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CHHHHHHHHHHHHHcCCeeEEEEEc
Confidence 4677888899998899988776654
No 303
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus subtilis}
Probab=20.88 E-value=43 Score=22.01 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhCCCCcCHHh
Q 038287 63 REAMRLVSALSDSGFKPDCFV 83 (91)
Q Consensus 63 ~~a~~~~~~m~~~g~~p~~~~ 83 (91)
-.+.++|.++.++|+.||..|
T Consensus 238 GNaadv~~~l~~~~i~~Dlvt 258 (552)
T 2fkn_A 238 GNAAEVHHTLLNRGVKIDIVT 258 (552)
T ss_dssp SCHHHHHHHHHTTTCCCSEEC
T ss_pred ccHHHHHHHHHHCCCCCCCCC
Confidence 356789999999999999765
No 304
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.87 E-value=74 Score=14.38 Aligned_cols=7 Identities=0% Similarity=0.249 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 038287 30 YNFVDQM 36 (91)
Q Consensus 30 ~~~~~~m 36 (91)
.++++.+
T Consensus 37 ~el~~~l 43 (83)
T 2fu4_A 37 EDLYKRL 43 (83)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 305
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A
Probab=20.77 E-value=36 Score=20.31 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHHHhCCCCcCHHhHh
Q 038287 60 KNLREAMRLVSALSDSGFKPDCFVYN 85 (91)
Q Consensus 60 ~~~~~a~~~~~~m~~~g~~p~~~~~~ 85 (91)
..++.+.++++.|.+.|++|....|.
T Consensus 127 n~~~~~~~~~~~~~e~Gv~pE~e~fd 152 (282)
T 2y7e_A 127 NHPADIIRLAEAFKQYNVVPEVEVYE 152 (282)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEEEC
Confidence 45677888899998889988766654
No 306
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=20.74 E-value=1e+02 Score=15.93 Aligned_cols=18 Identities=0% Similarity=-0.016 Sum_probs=14.4
Q ss_pred HhcCChHHHHHHHHHHHh
Q 038287 21 CKCRSLTTVYNFVDQMRA 38 (91)
Q Consensus 21 ~~~~~~~~a~~~~~~m~~ 38 (91)
++.|++++|.++++.-.+
T Consensus 48 Ak~gdfe~A~~~l~eA~e 65 (120)
T 3l8r_A 48 MREKNYILAEQKLQEAND 65 (120)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 577899999998887654
No 307
>1ucp_A Pycard, ASC, apoptosis-associated speck-like protein containing A CARD; death domain fold; NMR {Homo sapiens} SCOP: a.77.1.5
Probab=20.52 E-value=18 Score=17.53 Aligned_cols=21 Identities=5% Similarity=0.042 Sum_probs=11.4
Q ss_pred HHHHHccCCHHHHHHHHHHHH
Q 038287 53 IDNVCNTKNLREAMRLVSALS 73 (91)
Q Consensus 53 ~~~~~~~~~~~~a~~~~~~m~ 73 (91)
+..|+...-++.+.++|+.|.
T Consensus 57 v~~y~~~~A~~vt~~if~~mn 77 (91)
T 1ucp_A 57 VSFYLETYGAELTANVLRDMG 77 (91)
T ss_dssp HHTSCHHHHHHHHHHHHHHTT
T ss_pred HHHcCHHHHHHHHHHHHHHcC
Confidence 444444445556666666664
No 308
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=20.07 E-value=1.2e+02 Score=16.67 Aligned_cols=63 Identities=11% Similarity=0.097 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhC---------C----------CCccHHhHHHHHHHHHccCCHHHHHHHH
Q 038287 9 DIFTYNFLVKCLCKCRSLTTVYNFVDQMRASL---------G----------IKPNLVTYTILIDNVCNTKNLREAMRLV 69 (91)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------~----------~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 69 (91)
+...|..|=....+.|+++-|.+.|.....-. | +.-..--++....++-..|+++++.+++
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHH
Confidence 34567777777777777777777776653210 0 0001112455555566667777777776
Q ss_pred HH
Q 038287 70 SA 71 (91)
Q Consensus 70 ~~ 71 (91)
.+
T Consensus 113 ~~ 114 (177)
T 3mkq_B 113 AE 114 (177)
T ss_dssp HH
T ss_pred HH
Confidence 44
Done!