BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038289
(226 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 144 bits (363), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 119/218 (54%), Gaps = 15/218 (6%)
Query: 11 RKLIGARFYSI--PLTSNNHNTTRTTLAGSPRDSXXXXXXXXXXXXXXXXXXXXYFGLAR 68
RK+IGAR Y I P++ + N PRD+ +GL
Sbjct: 66 RKIIGARSYHIGRPISPGDVN--------GPRDTNGHGTHTASTAAGGLVSQANLYGLGL 117
Query: 69 GTARGGSPSSRIASYKACSEDGCSGSAILQAMDDAIADGVDIISISIGMSSLFQSDYLND 128
GTARGG P +RIA+YK C DGCS + IL A DDAIADGVDIIS+S+G ++ Y D
Sbjct: 118 GTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGAN--PRHYFVD 175
Query: 129 PIAIGAFHAEQMGVMVICSAGNDGPDPSTVVNTAPWIFTVGASSIDRDFQSTVLLGNGKT 188
IAIG+FHA + G++ SAGN GP+ T + +PW+ +V AS++DR F + V +GNG++
Sbjct: 176 AIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQS 235
Query: 189 IKGXXXXXXXXXXXMTYPIAFGKDIAAKFAPVSEARTC 226
+G YP+ G+DI S +R C
Sbjct: 236 FQG---VSINTFDNQYYPLVSGRDIPNTGFDKSTSRFC 270
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 5/181 (2%)
Query: 11 RKLIGARFYSIPLTSNNHNTTRTTLAGSPRDSXXXXXXXXXXXXXXXXXXXXYFGLARGT 70
RKLIGA +++ + +N+ T S RD+ +FG A GT
Sbjct: 71 RKLIGANYFNKGILANDPTVNITM--NSARDTDGHGTHCASITAGNFAKGVSHFGYAPGT 128
Query: 71 ARGGSPSSRIASYKACSEDGCSGSAILQAMDDAIADGVDIISISIGMSSLFQSDYLNDPI 130
ARG +P +R+A YK +G S ++ AMD A+ADGVD+ISIS G + D I
Sbjct: 129 ARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGYRFI---PLYEDAI 185
Query: 131 AIGAFHAEQMGVMVICSAGNDGPDPSTVVNTAPWIFTVGASSIDRDFQSTVLLGNGKTIK 190
+I +F A GV+V SAGN GP ++ N +PWI V + DR F T+ LGNG I+
Sbjct: 186 SIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLGNGLKIR 245
Query: 191 G 191
G
Sbjct: 246 G 246
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 59/111 (53%), Gaps = 10/111 (9%)
Query: 67 ARGTARGGSPSSRIASYKACSEDGC-SGSAILQAMDDAIAD----GVDIISISIGMSSLF 121
+ G +G +P +++ K + G S S I+ +D A+ + G+ +I++S+G S
Sbjct: 195 SNGKYKGMAPGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSS--- 251
Query: 122 QSDYLNDPIAIGAFHAEQMGVMVICSAGNDGPDPSTVVN--TAPWIFTVGA 170
QS D ++ +A G++V+ +AGN GP+ TV + A + TVGA
Sbjct: 252 QSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGA 302
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 32.3 bits (72), Expect = 0.23, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 98 QAMDDAIADGVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGND 151
QA+ DA+ G +I++S G ++L ++ L D +A+ GV ++ SAGND
Sbjct: 148 QAIRDAVNLGAKVINMSFGNAALAYAN-LPDETKKAFDYAKSKGVSIVTSAGND 200
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 73 GGSPSSRIASYKACSEDGCS-----GSAILQAMDDAIADGVD-IISISIGMSSLFQSDYL 126
G +P + + +YK + G +AI A D A A G IIS+S+G S+
Sbjct: 92 GVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSAN------ 145
Query: 127 NDPIAIGAFHAEQMGVMVICSAGNDGPDPSTV 158
N I+ +A GV+++ +AGN G T+
Sbjct: 146 NSLISSAVNYAYSKGVLIVAAAGNSGYSQGTI 177
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 32.0 bits (71), Expect = 0.31, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 98 QAMDDAIADGVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGND 151
QA+ DAI G +I+ S G ++L ++ L D +A+ GV ++ SAGND
Sbjct: 139 QAIRDAINLGAKVINXSFGNAALAYAN-LPDETKKAFDYAKSKGVSIVTSAGND 191
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 73 GGSPSSRIASYKACSEDGCS-----GSAILQAMDDAIADGVD-IISISIGMSSLFQSDYL 126
G +P + + +YK + G +AI A D A A G IIS+S+G S+
Sbjct: 92 GVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSAN------ 145
Query: 127 NDPIAIGAFHAEQMGVMVICSAGNDGPDPSTV 158
N I+ +A GV+++ +AGN G T+
Sbjct: 146 NSLISSAVNYAYSKGVLIVAAAGNSGYSQGTI 177
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 16/106 (15%)
Query: 98 QAMDDAIADGVDIISISIG-MSSLFQSD-YLNDPIAIGAFHAEQMGVMVICSAGNDGPDP 155
+A++ A+ +G +II++S G ++ ++D +L I + ++ V++I + GNDG +
Sbjct: 109 RAIEQAVNNGANIINVSAGQLTDAGEADTWLEKAIQL----CQENNVLLIAATGNDGCEC 164
Query: 156 STVVNTAPWIFTVGA----------SSIDRDFQSTVLLGNGKTIKG 191
V + P + VGA S+ +Q +L GK I G
Sbjct: 165 LHVPASLPTVLAVGAMDDQGKPVDFSNWGDAYQKQGILAPGKDILG 210
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 73 GGSPSSRIASYKACSEDGCS-----GSAILQAMDDAIADGVDIISISIGMSSLFQSDYLN 127
G +P + + +YK +DG AI A D A A ++ I++ + S +S +
Sbjct: 91 GVAPEADLWAYKVLGDDGSGYADDIAEAIRHAGDQATALNTKVV-INMSLGSSGESSLIT 149
Query: 128 DPIAIGAFHAEQMGVMVICSAGNDGPDPSTV 158
+ + +A GV++I +AGN GP P ++
Sbjct: 150 NAVD----YAYDKGVLIIAAAGNSGPKPGSI 176
>pdb|3QFH|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|B Chain B, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|C Chain C, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|D Chain D, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|E Chain E, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|F Chain F, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|G Chain G, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|H Chain H, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus
Length = 447
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 67 ARGTARGGSPSSRIASYKACSEDGCSGSAILQAMDDAIADGVDIISISIGM--------S 118
A G G +P+++ Y+ + +A+ A DG +I+IS+G
Sbjct: 187 ANGKLIGVAPNNKFTMYRVFGSKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDH 246
Query: 119 SLFQSDYL--NDPIAIGAFHAEQMGVMVICSAGNDGPD 154
F+ D D + +A++ +V+ +AGNDG D
Sbjct: 247 QTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGID 284
>pdb|3T41|A Chain A, 1.95 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) S393a
Mutant From Staphylococcus Aureus
pdb|3T41|B Chain B, 1.95 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) S393a
Mutant From Staphylococcus Aureus
Length = 471
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 67 ARGTARGGSPSSRIASYKACSEDGCSGSAILQAMDDAIADGVDIISISIGM--------S 118
A G G +P+++ Y+ + +A+ A DG +I+IS+G
Sbjct: 211 ANGKLIGVAPNNKFTMYRVFGSKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDH 270
Query: 119 SLFQSDYL--NDPIAIGAFHAEQMGVMVICSAGNDGPD 154
F+ D D + +A++ +V+ +AGNDG D
Sbjct: 271 QTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGID 308
>pdb|4H6V|A Chain A, Structure Of Patellamide Maturation Protease Pata
Length = 306
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 96 ILQAMDDAIADGVDIISISIG-MSSLFQSD-YLNDPIAIGAFHAEQMGVMVICSAGNDGP 153
+ + ++ A+ G II+IS G ++ ++D +L + +++ Q V+++ +AGN+G
Sbjct: 104 LARGIERAVNAGAHIINISGGELTDFGEADGWLENAVSL----CRQNNVLLVAAAGNNGC 159
Query: 154 DPSTVVNTAPWIFTVGA 170
D V P + VGA
Sbjct: 160 DCLHVPAALPAVLAVGA 176
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 69 GTARGGSPSSRIASYKACSEDGC-SGSAILQAMDDAIADGVDIISISIGMSS 119
GT +PS+ + + K DG S I+ ++ AIA+ +D+I++S+G S
Sbjct: 70 GTVLAVAPSASLYAVKVLGADGSGQASWIINGIEWAIANNMDVINMSLGSPS 121
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 69 GTARGGSPSSRIASYKACSEDGC-SGSAILQAMDDAIADGVDIISISIGMSS 119
GT +PS+ + + K DG S I+ ++ AIA+ +D+I++S+G S
Sbjct: 70 GTVLAVAPSASLYAVKVLGADGSGQASWIINGIEWAIANNMDVINMSLGSPS 121
>pdb|3ZXX|A Chain A, Structure Of Self-cleaved Protease Domain Of Pata
Length = 307
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 96 ILQAMDDAIADGVDIISISIG-MSSLFQSD-YLNDPIAIGAFHAEQMGVMVICSAGNDGP 153
+ + ++ A+ G II+IS G ++ ++D +L + +++ Q V+++ +AGN+G
Sbjct: 113 LARGIERAVNAGAHIINISGGELTDFGEADGWLENAVSL----CRQNNVLLVAAAGNNGC 168
Query: 154 DPSTVVNTAPWIFTVGA 170
D V P + VGA
Sbjct: 169 DCLHVPAALPAVLAVGA 185
>pdb|3ZXY|A Chain A, Structure Of S218a Mutant Of The Protease Domain Of Pata
Length = 282
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 96 ILQAMDDAIADGVDIISISIG-MSSLFQSD-YLNDPIAIGAFHAEQMGVMVICSAGNDGP 153
+ + ++ A+ G II+IS G ++ ++D +L + +++ Q V+++ +AGN+G
Sbjct: 94 LARGIERAVNAGAHIINISGGELTDFGEADGWLENAVSL----CRQNNVLLVAAAGNNGC 149
Query: 154 DPSTVVNTAPWIFTVGA 170
D V P + VGA
Sbjct: 150 DCLHVPAALPAVLAVGA 166
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 69 GTARGGSPSSRIASYKACSEDGCSG-SAILQAMDDAIADGVDIISISIG 116
GT +PS+ + + K DG S I+ ++ AIA+ +D+I++S+G
Sbjct: 67 GTVLAVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLG 115
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 69 GTARGGSPSSRIASYKACSEDGCSG-SAILQAMDDAIADGVDIISISIG 116
GT +PS+ + + K DG S I+ ++ AIA+ +D+I++S+G
Sbjct: 70 GTVLAVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLG 118
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 102 DAIADGVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGNDGPDPSTVVNT 161
D AD ++IS+S+G + YL D I I A++A G++++ ++GN+G +
Sbjct: 222 DPDADAAEVISMSLGGPA--DDSYLYDMI-IQAYNA---GIVIVAASGNEGAPSPSYPAA 275
Query: 162 APWIFTVGA 170
P + VGA
Sbjct: 276 YPEVIAVGA 284
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 73 GGSPSSRIASYKACSEDGCSG-SAILQAMDDAIADGVDIISISIGMSSLFQSDYLNDPIA 131
G +PS+ + + K DG S+I Q ++ A +G+ + ++S+G S S L +
Sbjct: 81 GVAPSAELYAVKVLGADGRGAISSIAQGLEWAGNNGMHVANLSLGSPS--PSATLEQAV- 137
Query: 132 IGAFHAEQMGVMVICSAGNDG 152
A GV+V+ ++GN G
Sbjct: 138 ---NSATSRGVLVVAASGNSG 155
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 69 GTARGGSPSSRIASYKACSEDGCSG-SAILQAMDDAIADGVDIISISIG 116
GT +PS+ + + K DG S I+ ++ AIA+ +D+I++S+G
Sbjct: 70 GTVLAVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLG 118
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 69 GTARGGSPSSRIASYKACSEDGCSG-SAILQAMDDAIADGVDIISISIG 116
GT +PS+ + + K DG S I+ ++ AIA+ +D+I++S+G
Sbjct: 70 GTVLAVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLG 118
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 69 GTARGGSPSSRIASYKACSEDGCSG-SAILQAMDDAIADGVDIISISIG 116
GT +PS+ + + K DG S I+ ++ AIA+ +D+I++S+G
Sbjct: 70 GTVLAVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLG 118
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 73 GGSPSSRIASYKACSEDGC-SGSAILQAMDDAIADGVDIISISIGMSSLFQSDYLNDPIA 131
G +P+ + + K + G S SAI+ ++ A +G+D+I++S+G S S L +
Sbjct: 82 GVAPNVSLYAIKVLNSSGSGSYSAIVSGIEWATQNGLDVINMSLGGPS--GSTALKQAVD 139
Query: 132 IGAFHAEQMGVMVICSAGNDG 152
A G++V+ +AGN G
Sbjct: 140 ----KAYASGIVVVAAAGNSG 156
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 69 GTARGGSPSSRIASYKACSEDGCSG-SAILQAMDDAIADGVDIISISIG 116
GT +PS+ + + K DG S I+ ++ AIA+ +D+I++S+G
Sbjct: 70 GTVLAVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLG 118
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 73 GGSPSSRIASYKACSEDGCSG-SAILQAMDDAIADGVDIISISIG 116
G +PS+ + + K DG S I+ ++ AIA+ +D+I++S+G
Sbjct: 83 GVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLG 127
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 73 GGSPSSRIASYKACSEDGCSG-SAILQAMDDAIADGVDIISISIG 116
G +PS+ + + K DG S I+ ++ AIA+ +D+I++S+G
Sbjct: 83 GVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLG 127
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 73 GGSPSSRIASYKACSEDGCSG-SAILQAMDDAIADGVDIISISIG 116
G +PS+ + + K DG S I+ ++ AIA+ +D+I++S+G
Sbjct: 83 GVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLG 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,627,614
Number of Sequences: 62578
Number of extensions: 188740
Number of successful extensions: 489
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 446
Number of HSP's gapped (non-prelim): 74
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)