Query 038289
Match_columns 226
No_of_seqs 151 out of 1462
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 09:30:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038289.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038289hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07491 Peptidases_S8_7 Peptid 100.0 5.5E-33 1.2E-37 237.0 14.3 195 2-220 13-221 (247)
2 cd04852 Peptidases_S8_3 Peptid 100.0 1.2E-31 2.5E-36 235.2 16.4 197 10-220 76-281 (307)
3 cd07479 Peptidases_S8_SKI-1_li 100.0 8.1E-32 1.8E-36 230.8 13.7 187 2-220 18-221 (255)
4 cd05561 Peptidases_S8_4 Peptid 100.0 1.1E-31 2.4E-36 227.8 14.3 184 2-220 9-200 (239)
5 cd07496 Peptidases_S8_13 Pepti 100.0 2.4E-31 5.2E-36 230.8 15.4 207 1-220 9-261 (285)
6 PTZ00262 subtilisin-like prote 100.0 2E-31 4.3E-36 248.9 14.4 203 2-220 326-565 (639)
7 cd07483 Peptidases_S8_Subtilis 100.0 2.2E-31 4.8E-36 232.1 13.4 171 36-220 78-265 (291)
8 cd07476 Peptidases_S8_thiazoli 100.0 1.7E-30 3.6E-35 224.1 15.2 170 37-220 44-220 (267)
9 cd07485 Peptidases_S8_Fervidol 100.0 5E-30 1.1E-34 221.3 16.5 179 37-220 55-248 (273)
10 cd07498 Peptidases_S8_15 Pepti 100.0 4.5E-30 9.8E-35 217.3 14.9 196 2-220 9-218 (242)
11 cd07493 Peptidases_S8_9 Peptid 100.0 3.4E-30 7.4E-35 220.9 13.9 195 2-220 10-235 (261)
12 cd07484 Peptidases_S8_Thermita 100.0 9.3E-30 2E-34 217.7 15.8 190 2-220 38-232 (260)
13 cd07482 Peptidases_S8_Lantibio 100.0 1.2E-29 2.6E-34 220.1 15.9 207 2-220 10-269 (294)
14 KOG1153 Subtilisin-related pro 100.0 2.2E-30 4.8E-35 229.4 11.3 185 2-221 229-427 (501)
15 cd07477 Peptidases_S8_Subtilis 100.0 6.5E-30 1.4E-34 214.2 13.1 190 2-220 10-205 (229)
16 cd07490 Peptidases_S8_6 Peptid 100.0 2.6E-29 5.7E-34 213.9 15.6 196 2-220 10-228 (254)
17 cd07481 Peptidases_S8_Bacillop 100.0 3.3E-29 7.2E-34 215.2 13.7 170 35-220 44-236 (264)
18 cd04077 Peptidases_S8_PCSK9_Pr 100.0 6.3E-29 1.4E-33 212.1 14.9 184 2-220 35-228 (255)
19 cd07497 Peptidases_S8_14 Pepti 100.0 8.7E-29 1.9E-33 217.6 14.6 184 37-220 50-280 (311)
20 cd07487 Peptidases_S8_1 Peptid 100.0 6.6E-28 1.4E-32 205.9 17.5 200 2-220 12-238 (264)
21 cd07489 Peptidases_S8_5 Peptid 100.0 1.1E-27 2.3E-32 210.4 15.0 198 2-220 23-239 (312)
22 cd04847 Peptidases_S8_Subtilis 100.0 4.7E-28 1E-32 210.8 12.5 198 2-220 9-265 (291)
23 cd07473 Peptidases_S8_Subtilis 100.0 3.5E-27 7.6E-32 201.4 17.4 170 35-220 55-233 (259)
24 cd07475 Peptidases_S8_C5a_Pept 100.0 1.2E-27 2.6E-32 212.6 14.8 173 39-220 78-283 (346)
25 cd07474 Peptidases_S8_subtilis 99.9 7.9E-27 1.7E-31 202.7 17.5 207 2-220 12-244 (295)
26 cd05562 Peptidases_S53_like Pe 99.9 3.6E-27 7.7E-32 204.2 15.1 159 37-220 42-225 (275)
27 cd04857 Peptidases_S8_Tripepti 99.9 2.5E-27 5.3E-32 214.0 14.5 172 39-220 181-380 (412)
28 cd07492 Peptidases_S8_8 Peptid 99.9 1.2E-26 2.7E-31 194.2 14.5 183 2-220 10-196 (222)
29 cd07480 Peptidases_S8_12 Pepti 99.9 1.4E-26 2.9E-31 202.3 13.4 194 2-220 18-246 (297)
30 cd04843 Peptidases_S8_11 Pepti 99.9 9.7E-27 2.1E-31 201.7 12.1 168 39-220 47-246 (277)
31 cd04848 Peptidases_S8_Autotran 99.9 1.4E-25 3E-30 191.0 14.3 175 37-220 40-241 (267)
32 cd04842 Peptidases_S8_Kp43_pro 99.9 9E-26 2E-30 195.8 13.3 171 41-220 52-259 (293)
33 PF00082 Peptidase_S8: Subtila 99.9 5.3E-25 1.2E-29 189.3 14.1 201 2-220 8-230 (282)
34 cd07494 Peptidases_S8_10 Pepti 99.9 3.5E-25 7.6E-30 193.7 12.3 159 38-220 56-257 (298)
35 cd04059 Peptidases_S8_Protein_ 99.9 5.9E-25 1.3E-29 191.3 11.4 199 2-221 49-272 (297)
36 cd07488 Peptidases_S8_2 Peptid 99.9 1.7E-24 3.6E-29 184.7 10.9 161 38-220 32-216 (247)
37 cd00306 Peptidases_S8_S53 Pept 99.9 2.3E-22 5E-27 167.0 16.0 170 38-220 39-217 (241)
38 cd07478 Peptidases_S8_CspA-lik 99.9 4.3E-23 9.4E-28 189.9 11.6 106 37-152 72-194 (455)
39 KOG1114 Tripeptidyl peptidase 99.8 2E-19 4.4E-24 170.9 13.1 170 41-220 308-505 (1304)
40 KOG4266 Subtilisin kexin isozy 99.8 9E-20 2E-24 167.3 10.1 186 2-220 211-413 (1033)
41 COG1404 AprE Subtilisin-like s 99.7 6.8E-16 1.5E-20 140.6 13.7 198 2-220 152-370 (508)
42 cd04056 Peptidases_S53 Peptida 99.4 5.1E-13 1.1E-17 119.9 9.7 106 70-178 82-201 (361)
43 KOG3526 Subtilisin-like propro 98.8 2.2E-08 4.7E-13 88.6 7.3 194 2-220 171-393 (629)
44 COG4934 Predicted protease [Po 95.8 0.037 8E-07 56.1 8.0 95 72-170 289-395 (1174)
45 KOG3525 Subtilisin-like propro 90.5 0.28 6.2E-06 45.3 3.7 133 38-181 75-218 (431)
46 PF08821 CGGC: CGGC domain; I 56.7 79 0.0017 23.4 7.6 65 76-146 36-104 (107)
47 PF02601 Exonuc_VII_L: Exonucl 51.3 78 0.0017 27.7 7.6 76 75-152 39-118 (319)
48 KOG2733 Uncharacterized membra 44.0 37 0.00079 31.0 4.2 68 72-152 78-148 (423)
49 COG1570 XseA Exonuclease VII, 40.5 98 0.0021 28.9 6.6 78 74-153 159-237 (440)
50 PRK00286 xseA exodeoxyribonucl 31.7 1.3E+02 0.0028 27.6 6.1 77 75-153 160-236 (438)
51 cd00411 Asparaginase Asparagin 30.9 83 0.0018 27.9 4.5 58 79-148 211-269 (323)
52 TIGR00237 xseA exodeoxyribonuc 30.6 1.8E+02 0.0038 27.0 6.7 77 75-153 154-231 (432)
53 COG3384 Aromatic ring-opening 29.9 71 0.0015 27.7 3.7 41 107-151 132-172 (268)
54 TIGR00520 asnASE_II L-asparagi 29.8 86 0.0019 28.2 4.4 59 79-149 240-299 (349)
55 KOG0256 1-aminocyclopropane-1- 28.9 4.3E+02 0.0094 24.7 8.6 64 77-146 192-264 (471)
56 PRK09461 ansA cytoplasmic aspa 28.5 1.1E+02 0.0023 27.4 4.8 60 79-148 211-271 (335)
57 PF00809 Pterin_bind: Pterin b 26.7 1.2E+02 0.0026 25.0 4.5 20 100-119 85-104 (210)
58 COG1879 RbsB ABC-type sugar tr 26.6 1.8E+02 0.0039 25.0 5.9 51 91-150 75-125 (322)
59 smart00870 Asparaginase Aspara 26.3 1.1E+02 0.0024 27.1 4.4 60 78-149 212-272 (323)
60 TIGR00519 asnASE_I L-asparagin 25.5 1.3E+02 0.0027 26.9 4.7 59 78-148 212-271 (336)
61 COG2185 Sbm Methylmalonyl-CoA 25.0 2.1E+02 0.0046 22.4 5.2 52 97-154 53-106 (143)
62 PRK02412 aroD 3-dehydroquinate 24.9 4.1E+02 0.0089 22.5 7.6 66 79-152 77-146 (253)
63 PF14097 SpoVAE: Stage V sporu 22.9 2.6E+02 0.0055 22.8 5.4 92 94-189 10-114 (180)
64 PTZ00174 phosphomannomutase; P 22.4 1.8E+02 0.0039 24.3 4.9 22 129-150 26-47 (247)
65 PF13090 PP_kinase_C: Polyphos 22.4 3.4E+02 0.0074 24.6 6.7 69 73-147 29-98 (352)
66 TIGR00640 acid_CoA_mut_C methy 22.2 2.1E+02 0.0045 21.8 4.8 50 98-153 44-95 (132)
67 PF03060 NMO: Nitronate monoox 21.6 1.8E+02 0.0039 25.7 4.9 20 100-119 106-125 (330)
68 COG0157 NadC Nicotinate-nucleo 21.2 2.6E+02 0.0057 24.4 5.6 73 99-180 200-273 (280)
69 PF13407 Peripla_BP_4: Peripla 20.5 3E+02 0.0065 22.3 5.8 47 91-146 39-85 (257)
No 1
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.5e-33 Score=237.04 Aligned_cols=195 Identities=21% Similarity=0.245 Sum_probs=155.4
Q ss_pred ccccccCCC-CceEEEEEcCCCcccCCCCCCCCCCCCCCCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCeE
Q 038289 2 GITIQYCGC-RKLIGARFYSIPLTSNNHNTTRTTLAGSPRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSRI 80 (226)
Q Consensus 2 gi~~~~~~~-~k~~g~~~f~~~~~~~~~~~~~~~~~~~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~l 80 (226)
||+.+|++. .+++..++|.....+. ....+...|..||||||||||+ |+||+++|
T Consensus 13 Gvd~~hpdl~~~i~~~~~~~~~~~~~------~~~~~~~~d~~gHGT~vAgiI~------------------gvap~a~i 68 (247)
T cd07491 13 GVDILDSDLQGKIIGGKSFSPYEGDG------NKVSPYYVSADGHGTAMARMIC------------------RICPSAKL 68 (247)
T ss_pred CcCCCchhhccccccCCCCCCCCCCc------ccCCCCCCCCCCcHHHHHHHHH------------------HHCCCCeE
Confidence 889999998 4567777887654321 1112234578999999999996 78999999
Q ss_pred EEEeecCCCC-------CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEecCCCCC
Q 038289 81 ASYKACSEDG-------CSGSAILQAMDDAIADGVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGNDGP 153 (226)
Q Consensus 81 ~~~rv~~~~~-------~~~~~~~~ai~~a~~~g~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~ 153 (226)
+++|++...+ +....+++||+||+++++||||||||.............+..++++|.++|++||+||||++.
T Consensus 69 ~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~ 148 (247)
T cd07491 69 YVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGA 148 (247)
T ss_pred EEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCC
Confidence 9999998643 457889999999999999999999997652111123466777889999999999999999998
Q ss_pred CCC-C--CCCCCCCeEEEeceecCCccccceeeCCCeeE--ecccccccCC-CCCCeeeeEEcCCCCCCCCCc
Q 038289 154 DPS-T--VVNTAPWIFTVGASSIDRDFQSTVLLGNGKTI--KGSAISLSNL-SSSMTYPIAFGKDIAAKFAPV 220 (226)
Q Consensus 154 ~~~-~--~~~~~p~vitVgA~~~~~~~~~~s~~G~~~~i--~g~~i~~~~~-~~~~~~~~v~~~~~~~~~~~~ 220 (226)
... . .++..|+||+|||++.++.++.|+++|..+.+ ||+.|.+... .....|....|||+++|.+++
T Consensus 149 ~~~~~~~~pa~~~~Vi~VgA~~~~g~~~~~S~~g~~vd~~APG~~i~s~~~~~~~~~~~~~sGTS~Atp~vaG 221 (247)
T cd07491 149 FTGDTYPPPAARDRIFRIGAADEDGGADAPVGDEDRVDYILPGENVEARDRPPLSNSFVTHTGSSVATALAAG 221 (247)
T ss_pred cCCCcccCcccCCCeEEEEeeCCCCCCccccCCCCcceEEeCCCceecCCcCCCCCCeeeeccHHHHHHHHHH
Confidence 754 3 34567999999999999999999999988766 8888877764 335789999999999998765
No 2
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.98 E-value=1.2e-31 Score=235.18 Aligned_cols=197 Identities=47% Similarity=0.624 Sum_probs=157.2
Q ss_pred CCceEEEEEcCCCcccCCCCCCCCCCCCCCCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCeEEEEeecCCC
Q 038289 10 CRKLIGARFYSIPLTSNNHNTTRTTLAGSPRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSRIASYKACSED 89 (226)
Q Consensus 10 ~~k~~g~~~f~~~~~~~~~~~~~~~~~~~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~l~~~rv~~~~ 89 (226)
++|++++++|.+++..... .+...++.+|.|..||||||||||+|...++....+...+.+.||||+|+|+++|++...
T Consensus 76 ~~ki~g~~~~~~~~~~~~~-~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~ 154 (307)
T cd04852 76 NNKLIGARYFSDGYDAYGG-FNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPD 154 (307)
T ss_pred CCeEEEEEEcccchhhccC-cccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCC
Confidence 4799999999887765433 234566788899999999999999999876655555556667899999999999999974
Q ss_pred -CCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCCCeEEE
Q 038289 90 -GCSGSAILQAMDDAIADGVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGNDGPDPSTVVNTAPWIFTV 168 (226)
Q Consensus 90 -~~~~~~~~~ai~~a~~~g~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitV 168 (226)
.+..+.++++|++|++++++|||||||.... ....+.+..+.+++.++|++||+||||+|+.....++..|++|+|
T Consensus 155 ~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~---~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~V 231 (307)
T cd04852 155 GGCFGSDILAAIDQAIADGVDVISYSIGGGSP---DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTV 231 (307)
T ss_pred CCccHHHHHHHHHHHHHcCCCEEEeCCCCCCC---CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEE
Confidence 4889999999999999999999999998762 334566777778889999999999999998877888899999999
Q ss_pred eceecCCccccceeeCCCeeEecccccccCC--------CCCCeeeeEEcCCCCCCCCCc
Q 038289 169 GASSIDRDFQSTVLLGNGKTIKGSAISLSNL--------SSSMTYPIAFGKDIAAKFAPV 220 (226)
Q Consensus 169 gA~~~~~~~~~~s~~G~~~~i~g~~i~~~~~--------~~~~~~~~v~~~~~~~~~~~~ 220 (226)
||++ .. ..+..||..+..... .....|..+.|||+++|.++.
T Consensus 232 ga~~---~~-------~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG 281 (307)
T cd04852 232 AAST---LK-------PDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASPHVAG 281 (307)
T ss_pred Eecc---Cc-------cceeeccCceeecccCccccccCCCCCcEEEeCcHHHHHHHHHH
Confidence 9988 11 223335555444322 234678999999999998776
No 3
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=99.97 E-value=8.1e-32 Score=230.75 Aligned_cols=187 Identities=20% Similarity=0.274 Sum_probs=147.5
Q ss_pred ccccccCCCCceEEEEEcCCCcccCCCCCCCCCCCCCCCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCeEE
Q 038289 2 GITIQYCGCRKLIGARFYSIPLTSNNHNTTRTTLAGSPRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSRIA 81 (226)
Q Consensus 2 gi~~~~~~~~k~~g~~~f~~~~~~~~~~~~~~~~~~~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~l~ 81 (226)
||..+|++...++..++|.+. ..+.|+.||||||||||+++..+ +.||||+++|+
T Consensus 18 Gv~~~hp~l~~~~~~~~~~~~--------------~~~~d~~gHGT~VAGiIa~~~~~-----------~~GvAp~a~l~ 72 (255)
T cd07479 18 GLAKDHPHFRNVKERTNWTNE--------------KTLDDGLGHGTFVAGVIASSREQ-----------CLGFAPDAEIY 72 (255)
T ss_pred CCCCCCcchhccccccccCCC--------------CCCCCCCCcHHHHHHHHHccCCC-----------ceeECCCCEEE
Confidence 788899997665554444321 23567889999999999987431 26999999999
Q ss_pred EEeecCCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEecCCCCCCCCC--C
Q 038289 82 SYKACSEDG-CSGSAILQAMDDAIADGVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGNDGPDPST--V 158 (226)
Q Consensus 82 ~~rv~~~~~-~~~~~~~~ai~~a~~~g~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~--~ 158 (226)
.+|++...+ ...++++++++|+++++++|||||||.... ....+...+.++.++|++||+||||+++...+ +
T Consensus 73 ~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~~-----~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~ 147 (255)
T cd07479 73 IFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPDF-----MDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNN 147 (255)
T ss_pred EEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCCCC-----CCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccC
Confidence 999998766 677889999999999999999999997542 22344455577889999999999999975433 5
Q ss_pred CCCCCCeEEEeceecCCccccceeeCCC--------------eeEecccccccCCCCCCeeeeEEcCCCCCCCCCc
Q 038289 159 VNTAPWIFTVGASSIDRDFQSTVLLGNG--------------KTIKGSAISLSNLSSSMTYPIAFGKDIAAKFAPV 220 (226)
Q Consensus 159 ~~~~p~vitVgA~~~~~~~~~~s~~G~~--------------~~i~g~~i~~~~~~~~~~~~~v~~~~~~~~~~~~ 220 (226)
|+..+++|+|||++.+++++.||++|.. +..||..++...+ ...|..+.||||++|.+++
T Consensus 148 Pa~~~~vi~Vga~~~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~--~~~~~~~sGTS~AaP~VaG 221 (255)
T cd07479 148 PADQMDVIGVGGIDFDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKL--KGGCRALSGTSVASPVVAG 221 (255)
T ss_pred cccCCCceEEeeeccCCccccccCCCCCcccccCCCCCcCccEEecCCCeecccc--CCCeEEeccHHHHHHHHHH
Confidence 6778999999999999999999998842 2237777776554 4568889999999998765
No 4
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.97 E-value=1.1e-31 Score=227.80 Aligned_cols=184 Identities=23% Similarity=0.287 Sum_probs=149.4
Q ss_pred ccccccCCC-CceEEEEEcCCCcccCCCCCCCCCCCCCCCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCeE
Q 038289 2 GITIQYCGC-RKLIGARFYSIPLTSNNHNTTRTTLAGSPRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSRI 80 (226)
Q Consensus 2 gi~~~~~~~-~k~~g~~~f~~~~~~~~~~~~~~~~~~~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~l 80 (226)
||+.+|+++ .+++..++|.. ..+.|..+|||||||||+++..+. .||||+|+|
T Consensus 9 Gvd~~hp~l~~~~~~~~~~~~---------------~~~~~~~~HGT~vAgiia~~~~~~-----------~Gvap~a~i 62 (239)
T cd05561 9 GIDTAHPALSAVVIARLFFAG---------------PGAPAPSAHGTAVASLLAGAGAQR-----------PGLLPGADL 62 (239)
T ss_pred CCCCCCcccccCccccccCCC---------------CCCCCCCCCHHHHHHHHhCCCCCC-----------cccCCCCEE
Confidence 788999996 33333222211 135678999999999999986432 499999999
Q ss_pred EEEeecCCCC----CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEecCCCCCCC-
Q 038289 81 ASYKACSEDG----CSGSAILQAMDDAIADGVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGNDGPDP- 155 (226)
Q Consensus 81 ~~~rv~~~~~----~~~~~~~~ai~~a~~~g~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~- 155 (226)
+.+|++...+ ++..++++||+|+++++++|||||||.... ..+..+++++.++|++||+||||+++..
T Consensus 63 ~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~~-------~~l~~ai~~a~~~gilvv~AaGN~g~~~~ 135 (239)
T cd05561 63 YGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPPN-------ALLAAAVAAAAARGMVLVAAAGNDGPAAP 135 (239)
T ss_pred EEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCC-------HHHHHHHHHHHHCCCEEEEecCCCCCCCC
Confidence 9999988642 678899999999999999999999996442 4566677899999999999999999763
Q ss_pred CCCCCCCCCeEEEeceecCCccccceeeCCCeeE--ecccccccCCCCCCeeeeEEcCCCCCCCCCc
Q 038289 156 STVVNTAPWIFTVGASSIDRDFQSTVLLGNGKTI--KGSAISLSNLSSSMTYPIAFGKDIAAKFAPV 220 (226)
Q Consensus 156 ~~~~~~~p~vitVgA~~~~~~~~~~s~~G~~~~i--~g~~i~~~~~~~~~~~~~v~~~~~~~~~~~~ 220 (226)
..+|+..+++|+|++++.++.+..++++|..+.+ ||..++.... ...|..+.||||++|.+++
T Consensus 136 ~~~Pa~~~~vi~V~a~~~~~~~~~~s~~g~~~di~ApG~~i~~~~~--~~~~~~~sGTS~AaP~vaG 200 (239)
T cd05561 136 PLYPAAYPGVIAVTAVDARGRLYREANRGAHVDFAAPGVDVWVAAP--GGGYRYVSGTSFAAPFVTA 200 (239)
T ss_pred ccCcccCCCceEEEeecCCCCccccCCCCCcceEEccccceecccC--CCCEEEeCCHHHHHHHHHH
Confidence 4577788999999999999999999999987777 8887776543 5679999999999998776
No 5
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.97 E-value=2.4e-31 Score=230.82 Aligned_cols=207 Identities=20% Similarity=0.213 Sum_probs=159.3
Q ss_pred CccccccCCC-CceEEEEEcCCCcccCCCCC---CCCCC----------------CCCCCCCCCChHHHHHHhhccCCCC
Q 038289 1 MGITIQYCGC-RKLIGARFYSIPLTSNNHNT---TRTTL----------------AGSPRDSVGHGTHTASTAAGAHVAN 60 (226)
Q Consensus 1 ~gi~~~~~~~-~k~~g~~~f~~~~~~~~~~~---~~~~~----------------~~~~~d~~gHGThvAgiiag~~~~~ 60 (226)
-||..+|++. .+++..++|..+........ +...+ ...+.+..+|||||||||++...+.
T Consensus 9 tGi~~~Hp~l~~~~~~g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~HGT~vAgiiaa~~~~~ 88 (285)
T cd07496 9 TGVLFHHPDLAGVLLPGYDFISDPAIANDGDGRDSDPTDPGDWVTGDDVPPGGFCGSGVSPSSWHGTHVAGTIAAVTNNG 88 (285)
T ss_pred CCCCCCCcchhhccccCcccccCcccccCCCCCCCCCCCcccccccccccccccccCCCCCCCCCHHHHHHHHhCcCCCC
Confidence 3899999998 55567778875533221110 00001 2234467889999999999987644
Q ss_pred CcccccCCCcccccCCCCeEEEEeecCCCCCCHHHHHHHHHHHH----------HCCCcEEEEcccCCCCCCCCCCccHH
Q 038289 61 ASYFGLARGTARGGSPSSRIASYKACSEDGCSGSAILQAMDDAI----------ADGVDIISISIGMSSLFQSDYLNDPI 130 (226)
Q Consensus 61 ~~~~g~~~~~~~GvAP~a~l~~~rv~~~~~~~~~~~~~ai~~a~----------~~g~~VinlS~G~~~~~~~~~~~~~~ 130 (226)
.+ +.||||+|+|+.+|++...+...+++++|++|++ .++++|||||||.... ....+
T Consensus 89 ~~--------~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin~S~G~~~~-----~~~~~ 155 (285)
T cd07496 89 VG--------VAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSLGGDGA-----CSATM 155 (285)
T ss_pred CC--------ceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCCeEEEeCCCCCCC-----CCHHH
Confidence 33 3699999999999999876678899999999998 4579999999998653 14566
Q ss_pred HHHHHHHhcCCcEEEEecCCCCCCC-CCCCCCCCCeEEEeceecCCccccceeeCCCeeE--ecccccccCCC-------
Q 038289 131 AIGAFHAEQMGVMVICSAGNDGPDP-STVVNTAPWIFTVGASSIDRDFQSTVLLGNGKTI--KGSAISLSNLS------- 200 (226)
Q Consensus 131 ~~~~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~~~~~~~~s~~G~~~~i--~g~~i~~~~~~------- 200 (226)
..+++++.++|++||+||||++.+. ..+|+..+++|+|||++.++.++.||++|..+.+ ||..+......
T Consensus 156 ~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~~~~~~~S~~g~~vdi~apG~~i~~~~~~~~~~~~~ 235 (285)
T cd07496 156 QNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLRGQRASYSNYGPAVDVSAPGGDCASDVNGDGYPDSN 235 (285)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCCCCcccccCCCCCCCEEeCCCCccccCCCCcccccc
Confidence 6777889999999999999999876 5677888999999999999999999999988776 77776654321
Q ss_pred ------CCCeeeeEEcCCCCCCCCCc
Q 038289 201 ------SSMTYPIAFGKDIAAKFAPV 220 (226)
Q Consensus 201 ------~~~~~~~v~~~~~~~~~~~~ 220 (226)
....|....|||+++|.++.
T Consensus 236 ~~~~~~~~~~~~~~sGTS~AaP~vaG 261 (285)
T cd07496 236 TGTTSPGGSTYGFLQGTSMAAPHVAG 261 (285)
T ss_pred ccccCCCCCceEeeCcHHHHHHHHHH
Confidence 23467888999999987765
No 6
>PTZ00262 subtilisin-like protease; Provisional
Probab=99.97 E-value=2e-31 Score=248.93 Aligned_cols=203 Identities=16% Similarity=0.149 Sum_probs=149.1
Q ss_pred ccccccCCCC-ce------EEEEEcCCCcc----cCCCCCCCCCCCCCCCCCCCChHHHHHHhhccCCCCCcccccCCCc
Q 038289 2 GITIQYCGCR-KL------IGARFYSIPLT----SNNHNTTRTTLAGSPRDSVGHGTHTASTAAGAHVANASYFGLARGT 70 (226)
Q Consensus 2 gi~~~~~~~~-k~------~g~~~f~~~~~----~~~~~~~~~~~~~~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~ 70 (226)
||.++|+++. ++ +..+++.+++. +.....|-.+...+|.|++||||||||||+|..++..+.
T Consensus 326 GID~~HPDL~~ni~~n~~el~GrdgiDdD~nG~vdd~~G~nfVd~~~~P~D~~GHGTHVAGIIAA~gnN~~Gi------- 398 (639)
T PTZ00262 326 GIDYNHPDLHDNIDVNVKELHGRKGIDDDNNGNVDDEYGANFVNNDGGPMDDNYHGTHVSGIISAIGNNNIGI------- 398 (639)
T ss_pred CCCCCChhhhhhcccccccccCccccccccCCcccccccccccCCCCCCCCCCCcchHHHHHHhccccCCCce-------
Confidence 8899999963 22 22333333221 111111222233567899999999999999987655443
Q ss_pred ccccCCCCeEEEEeecCCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEecC
Q 038289 71 ARGGSPSSRIASYKACSEDG-CSGSAILQAMDDAIADGVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAG 149 (226)
Q Consensus 71 ~~GvAP~a~l~~~rv~~~~~-~~~~~~~~ai~~a~~~g~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAG 149 (226)
.||||+|+|+++|+++..+ +..+++++||+||+++|++|||||||.... ...+..++.+|.++|++||+|||
T Consensus 399 -~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmSlG~~~~------s~~l~~AV~~A~~kGILVVAAAG 471 (639)
T PTZ00262 399 -VGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGSFSFDEY------SGIFNESVKYLEEKGILFVVSAS 471 (639)
T ss_pred -eeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEeccccCCc------cHHHHHHHHHHHHCCCEEEEeCC
Confidence 6999999999999998766 788999999999999999999999997542 24566677999999999999999
Q ss_pred CCCCCCC--------------CCCC----CCCCeEEEeceecCC--c--cccceeeCC-CeeE--ecccccccCCCCCCe
Q 038289 150 NDGPDPS--------------TVVN----TAPWIFTVGASSIDR--D--FQSTVLLGN-GKTI--KGSAISLSNLSSSMT 204 (226)
Q Consensus 150 N~g~~~~--------------~~~~----~~p~vitVgA~~~~~--~--~~~~s~~G~-~~~i--~g~~i~~~~~~~~~~ 204 (226)
|++.... .+|+ ..++||+|||++.+. . +..+++++. .+.+ ||..|++..+ ...
T Consensus 472 N~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~~~~~s~s~~Snyg~~~VDIaAPG~dI~St~p--~g~ 549 (639)
T PTZ00262 472 NCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDKNNQYSLSPNSFYSAKYCQLAAPGTNIYSTFP--KNS 549 (639)
T ss_pred CCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCCCCcccccccccCCCCcceEEeCCCCeeeccC--CCc
Confidence 9986421 1332 358999999997643 2 334567763 3444 8888887765 467
Q ss_pred eeeEEcCCCCCCCCCc
Q 038289 205 YPIAFGKDIAAKFAPV 220 (226)
Q Consensus 205 ~~~v~~~~~~~~~~~~ 220 (226)
|..+.||||++|.+++
T Consensus 550 Y~~~SGTSmAAP~VAG 565 (639)
T PTZ00262 550 YRKLNGTSMAAPHVAA 565 (639)
T ss_pred eeecCCCchhHHHHHH
Confidence 9999999999998876
No 7
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=99.97 E-value=2.2e-31 Score=232.05 Aligned_cols=171 Identities=25% Similarity=0.298 Sum_probs=136.1
Q ss_pred CCCCCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCeEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcc
Q 038289 36 AGSPRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSRIASYKACSEDGCSGSAILQAMDDAIADGVDIISISI 115 (226)
Q Consensus 36 ~~~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~l~~~rv~~~~~~~~~~~~~ai~~a~~~g~~VinlS~ 115 (226)
...|.+..+|||||||||++...+..+. .||||+++|+.+|++........++++||+||++++++||||||
T Consensus 78 ~~~~~~~~gHGT~VAGiIaa~~~n~~g~--------~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN~S~ 149 (291)
T cd07483 78 VNGPISDADHGTHVAGIIAAVRDNGIGI--------DGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVINMSF 149 (291)
T ss_pred cCCCCCCCCcHHHHHHHHhCcCCCCCce--------EEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEEeCC
Confidence 3456678999999999999987665443 69999999999999875556778999999999999999999999
Q ss_pred cCCCCCCCCCCccHHHHHHHHHhcCCcEEEEecCCCCCCCC---CCCC--------CCCCeEEEeceecCCc---cccce
Q 038289 116 GMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGNDGPDPS---TVVN--------TAPWIFTVGASSIDRD---FQSTV 181 (226)
Q Consensus 116 G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~---~~~~--------~~p~vitVgA~~~~~~---~~~~s 181 (226)
|..... ....+..+++++.++|++||+||||++.+.. .+++ ..+++|+|||++..+. ++.||
T Consensus 150 G~~~~~----~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~~~~~~~~~S 225 (291)
T cd07483 150 GKSFSP----NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKYENNLVANFS 225 (291)
T ss_pred CCCCCC----ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccCCcccccccC
Confidence 975421 2245566678899999999999999986432 2222 3479999999987653 68899
Q ss_pred eeCC-CeeE--ecccccccCCCCCCeeeeEEcCCCCCCCCCc
Q 038289 182 LLGN-GKTI--KGSAISLSNLSSSMTYPIAFGKDIAAKFAPV 220 (226)
Q Consensus 182 ~~G~-~~~i--~g~~i~~~~~~~~~~~~~v~~~~~~~~~~~~ 220 (226)
++|. .+.+ ||..+.+..+ ...|....||||++|.+++
T Consensus 226 n~G~~~vdi~APG~~i~s~~~--~~~~~~~sGTS~AaP~vaG 265 (291)
T cd07483 226 NYGKKNVDVFAPGERIYSTTP--DNEYETDSGTSMAAPVVSG 265 (291)
T ss_pred CCCCCceEEEeCCCCeEeccC--cCCeEeeccHHHHHHHHHH
Confidence 9996 4455 8888777654 5678899999999998765
No 8
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=99.97 E-value=1.7e-30 Score=224.09 Aligned_cols=170 Identities=25% Similarity=0.248 Sum_probs=142.0
Q ss_pred CCCCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCeEEEEeecCCCC--CCHHHHHHHHHHHHHCCCcEEEEc
Q 038289 37 GSPRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSRIASYKACSEDG--CSGSAILQAMDDAIADGVDIISIS 114 (226)
Q Consensus 37 ~~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~l~~~rv~~~~~--~~~~~~~~ai~~a~~~g~~VinlS 114 (226)
.+..|..+|||||||||+++..+ .+.||||+|+|+.+|++...+ .....+++||+||+++++||||||
T Consensus 44 ~~~~~~~gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S 113 (267)
T cd07476 44 CQDGGASAHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINIS 113 (267)
T ss_pred CCCCCCCCcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEec
Confidence 34567799999999999987532 236999999999999988654 447899999999999999999999
Q ss_pred ccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCCCeEEEeceecCCccccceeeCCC-----eeE
Q 038289 115 IGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGNDGPDPSTVVNTAPWIFTVGASSIDRDFQSTVLLGNG-----KTI 189 (226)
Q Consensus 115 ~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~s~~G~~-----~~i 189 (226)
||.... .....+.+..+++++.++|++||+|+||++.....+|+..|++|+|||++.++.+..|+++|.. +.-
T Consensus 114 ~G~~~~--~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~~~~~~~s~~g~~~~~~~l~A 191 (267)
T cd07476 114 GGRLTQ--TGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDDGLPLKFSNWGADYRKKGILA 191 (267)
T ss_pred CCcCCC--CCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCCCCeeeecCCCCCCCCceEEe
Confidence 997553 3344567778889999999999999999998877788889999999999999999999999964 333
Q ss_pred ecccccccCCCCCCeeeeEEcCCCCCCCCCc
Q 038289 190 KGSAISLSNLSSSMTYPIAFGKDIAAKFAPV 220 (226)
Q Consensus 190 ~g~~i~~~~~~~~~~~~~v~~~~~~~~~~~~ 220 (226)
||..+.+..+ .+.|..+.|||+++|.+++
T Consensus 192 pG~~i~~~~~--~~~~~~~sGTS~AaP~vaG 220 (267)
T cd07476 192 PGENILGAAL--GGEVVRRSGTSFAAAIVAG 220 (267)
T ss_pred cCCCceeecC--CCCeEEeccHHHHHHHHHH
Confidence 8888777654 4678899999999998776
No 9
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=99.97 E-value=5e-30 Score=221.29 Aligned_cols=179 Identities=23% Similarity=0.182 Sum_probs=144.5
Q ss_pred CCCCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCeEEEEeecCCCC-CCHHHHHHHHHHHHHCCCcEEEEcc
Q 038289 37 GSPRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSRIASYKACSEDG-CSGSAILQAMDDAIADGVDIISISI 115 (226)
Q Consensus 37 ~~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~l~~~rv~~~~~-~~~~~~~~ai~~a~~~g~~VinlS~ 115 (226)
....|..+|||||||||++..++.....|++ ...|+||+++|+.+|++.... .....++++|+|+++.+++||||||
T Consensus 55 ~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~ 132 (273)
T cd07485 55 NDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSW 132 (273)
T ss_pred CCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecC
Confidence 3456779999999999999876554433332 235799999999999999755 7788999999999999999999999
Q ss_pred cCCCCCCCCCCccHHHHHHHHHhcC-------CcEEEEecCCCCCCCCCCCCCCCCeEEEeceecCCccccceeeCCCee
Q 038289 116 GMSSLFQSDYLNDPIAIGAFHAEQM-------GVMVICSAGNDGPDPSTVVNTAPWIFTVGASSIDRDFQSTVLLGNGKT 188 (226)
Q Consensus 116 G~~~~~~~~~~~~~~~~~~~~a~~~-------Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~s~~G~~~~ 188 (226)
|.... ..+...+..+++++.++ |++||+||||++.....+|+..+++|+|++++.++.++.||++|....
T Consensus 133 g~~~~---~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~~~~~~~S~~g~~~~ 209 (273)
T cd07485 133 GGTGG---GIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTNDNKASFSNYGRWVD 209 (273)
T ss_pred CCCCc---cccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCCCCcCccccCCCceE
Confidence 98652 23445566666777777 999999999999887777888999999999999999999999998888
Q ss_pred E--ecc-cccccCCCC----CCeeeeEEcCCCCCCCCCc
Q 038289 189 I--KGS-AISLSNLSS----SMTYPIAFGKDIAAKFAPV 220 (226)
Q Consensus 189 i--~g~-~i~~~~~~~----~~~~~~v~~~~~~~~~~~~ 220 (226)
+ ||. .+....+.. ...|..+.|||+++|-+++
T Consensus 210 i~apG~~~i~~~~~~~~~~~~~~~~~~sGTS~AaP~VaG 248 (273)
T cd07485 210 IAAPGVGTILSTVPKLDGDGGGNYEYLSGTSMAAPHVSG 248 (273)
T ss_pred EEeCCCCccccccccccCCCCCCeEeeccHHHHHHHHHH
Confidence 7 666 444444322 4678999999999987765
No 10
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.97 E-value=4.5e-30 Score=217.31 Aligned_cols=196 Identities=23% Similarity=0.247 Sum_probs=155.3
Q ss_pred ccccccCCCCc---eEEEEEcCCCcccCCCCCCCCCCCCCCCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCC
Q 038289 2 GITIQYCGCRK---LIGARFYSIPLTSNNHNTTRTTLAGSPRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSS 78 (226)
Q Consensus 2 gi~~~~~~~~k---~~g~~~f~~~~~~~~~~~~~~~~~~~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a 78 (226)
||..+|++... ++..++|..+ ...+.|..+||||||+||+++..+..+ +.||||++
T Consensus 9 Gi~~~hp~l~~~~~~~~~~~~~~~-------------~~~~~~~~~HGT~vAgiiag~~~~~~~--------~~Gvap~a 67 (242)
T cd07498 9 GVDLNHPDLSGKPKLVPGWNFVSN-------------NDPTSDIDGHGTACAGVAAAVGNNGLG--------VAGVAPGA 67 (242)
T ss_pred CCCCCChhhccCcCccCCccccCC-------------CCCCCCCCCCHHHHHHHHHhccCCCce--------eEeECCCC
Confidence 78888988643 2222222111 124568899999999999998654332 36999999
Q ss_pred eEEEEeecCCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCCCccHHHHHHHHHhc-CCcEEEEecCCCCCCCC
Q 038289 79 RIASYKACSEDG-CSGSAILQAMDDAIADGVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQ-MGVMVICSAGNDGPDPS 156 (226)
Q Consensus 79 ~l~~~rv~~~~~-~~~~~~~~ai~~a~~~g~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~-~Gi~vV~AAGN~g~~~~ 156 (226)
+|+.+|++.... .....+.++++|+++++++|||||||.... .......+..+++++.+ +|++||+||||++....
T Consensus 68 ~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~--~~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~ 145 (242)
T cd07498 68 KLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDS--TESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVS 145 (242)
T ss_pred EEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCC--CchHHHHHHHHHHHHhhcCCeEEEEecCCCCCccC
Confidence 999999998765 678899999999999999999999998764 33455677777788888 99999999999998876
Q ss_pred CCCCCCCCeEEEeceecCCccccceeeCCCeeE--ecccccccCC-------CCCCeeeeEEcCCCCCCCCCc
Q 038289 157 TVVNTAPWIFTVGASSIDRDFQSTVLLGNGKTI--KGSAISLSNL-------SSSMTYPIAFGKDIAAKFAPV 220 (226)
Q Consensus 157 ~~~~~~p~vitVgA~~~~~~~~~~s~~G~~~~i--~g~~i~~~~~-------~~~~~~~~v~~~~~~~~~~~~ 220 (226)
..++..+++|+|||++..+.+..|+++|..+.+ ||..+..... .....|..+.|||+++|.+++
T Consensus 146 ~~pa~~~~vi~Vga~~~~~~~~~~s~~g~~~~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~GTS~Aap~vaG 218 (242)
T cd07498 146 SGYAANPSVIAVAATDSNDARASYSNYGNYVDLVAPGVGIWTTGTGRGSAGDYPGGGYGSFSGTSFASPVAAG 218 (242)
T ss_pred CCCcCCCCeEEEEEeCCCCCccCcCCCCCCeEEEeCcCCcccCCccccccccCCCCceEeeCcHHHHHHHHHH
Confidence 678889999999999999999999999988776 7777666521 234568888999999987765
No 11
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.97 E-value=3.4e-30 Score=220.85 Aligned_cols=195 Identities=23% Similarity=0.221 Sum_probs=153.9
Q ss_pred ccccccCCC--------CceEEEEEcCCCcccCCCCCCCCCCCCCCCCCCCChHHHHHHhhccCCCCCcccccCCCcccc
Q 038289 2 GITIQYCGC--------RKLIGARFYSIPLTSNNHNTTRTTLAGSPRDSVGHGTHTASTAAGAHVANASYFGLARGTARG 73 (226)
Q Consensus 2 gi~~~~~~~--------~k~~g~~~f~~~~~~~~~~~~~~~~~~~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~G 73 (226)
||..+|++. .++++.++|.++... ...|.++|||||||+|++... +.+.|
T Consensus 10 Gi~~~h~~~~~~~~~~~~~i~~~~~~~~~~~~------------~~~~~~~HGT~vagiia~~~~----------~~~~G 67 (261)
T cd07493 10 GFPKVHEAFAFKHLFKNLRILGEYDFVDNSNN------------TNYTDDDHGTAVLSTMAGYTP----------GVMVG 67 (261)
T ss_pred CCCccCcchhhhccccCCceeeeecCccCCCC------------CCCCCCCchhhhheeeeeCCC----------CCEEE
Confidence 788888886 678888888776522 136789999999999998753 22469
Q ss_pred cCCCCeEEEEeecCCCC---CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCC---------CCCccHHHHHHHHHhcCC
Q 038289 74 GSPSSRIASYKACSEDG---CSGSAILQAMDDAIADGVDIISISIGMSSLFQS---------DYLNDPIAIGAFHAEQMG 141 (226)
Q Consensus 74 vAP~a~l~~~rv~~~~~---~~~~~~~~ai~~a~~~g~~VinlS~G~~~~~~~---------~~~~~~~~~~~~~a~~~G 141 (226)
|||+++|+.+|+..... .....++++++|+.+++++|||||||....... ......+.++++++.++|
T Consensus 68 vAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~g 147 (261)
T cd07493 68 TAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDGKTSFISRAANIAASKG 147 (261)
T ss_pred eCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCcccccccccccccchHHHHHHHHHHhCC
Confidence 99999999999876433 456778999999999999999999998653111 011235667778899999
Q ss_pred cEEEEecCCCCCC---CCCCCCCCCCeEEEeceecCCccccceeeCCC--------eeEecccccccCCCCCCeeeeEEc
Q 038289 142 VMVICSAGNDGPD---PSTVVNTAPWIFTVGASSIDRDFQSTVLLGNG--------KTIKGSAISLSNLSSSMTYPIAFG 210 (226)
Q Consensus 142 i~vV~AAGN~g~~---~~~~~~~~p~vitVgA~~~~~~~~~~s~~G~~--------~~i~g~~i~~~~~~~~~~~~~v~~ 210 (226)
++||+||||++.. ...+|+..+++|+|||++.++.+..||++|.. +..+|..++... ....|..+.|
T Consensus 148 ilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~~~~~~~S~~G~~~~~~~~pdi~a~G~~~~~~~--~~~~~~~~sG 225 (261)
T cd07493 148 MLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDANGNKASFSSIGPTADGRLKPDVMALGTGIYVIN--GDGNITYANG 225 (261)
T ss_pred eEEEEECCCCCCCCCCcccCcccCCceEEEEEeccCCCCCccCCcCCCCCCCcCCceEecCCCeEEEc--CCCcEEeeCc
Confidence 9999999999987 34567788999999999999999999999864 334777776643 3567889999
Q ss_pred CCCCCCCCCc
Q 038289 211 KDIAAKFAPV 220 (226)
Q Consensus 211 ~~~~~~~~~~ 220 (226)
||+++|.+++
T Consensus 226 TS~AaP~vaG 235 (261)
T cd07493 226 TSFSCPLIAG 235 (261)
T ss_pred HHHHHHHHHH
Confidence 9999998776
No 12
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=99.97 E-value=9.3e-30 Score=217.68 Aligned_cols=190 Identities=22% Similarity=0.243 Sum_probs=157.3
Q ss_pred ccccccCCC--CceEEEEEcCCCcccCCCCCCCCCCCCCCCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCe
Q 038289 2 GITIQYCGC--RKLIGARFYSIPLTSNNHNTTRTTLAGSPRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSR 79 (226)
Q Consensus 2 gi~~~~~~~--~k~~g~~~f~~~~~~~~~~~~~~~~~~~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~ 79 (226)
||..+|++. .++...++|.++. ..+.|+.+|||||||||++...+..+ +.|+||+++
T Consensus 38 Gi~~~h~~l~~~~~~~~~~~~~~~-------------~~~~d~~~HGT~vagii~~~~~~~~~--------~~Giap~a~ 96 (260)
T cd07484 38 GVDPTHPDLLKVKFVLGYDFVDND-------------SDAMDDNGHGTHVAGIIAAATNNGTG--------VAGVAPKAK 96 (260)
T ss_pred CCCCCCcccccCCcccceeccCCC-------------CCCCCCCCcHHHHHHHHhCccCCCCc--------eEeECCCCE
Confidence 788888883 5555666665443 23668899999999999987654332 369999999
Q ss_pred EEEEeecCCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEecCCCCCCCCCC
Q 038289 80 IASYKACSEDG-CSGSAILQAMDDAIADGVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGNDGPDPSTV 158 (226)
Q Consensus 80 l~~~rv~~~~~-~~~~~~~~ai~~a~~~g~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~ 158 (226)
|+.+|++.... .....++++|+++++++++|||||||.... ...+..+++.+.++|++||+|+||++.....+
T Consensus 97 l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~~~------~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~ 170 (260)
T cd07484 97 IMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGGLG------STALQEAINYAWNKGVVVVAAAGNEGVSSVSY 170 (260)
T ss_pred EEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCCCC------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCC
Confidence 99999998755 778899999999999999999999998652 35566667888999999999999999988889
Q ss_pred CCCCCCeEEEeceecCCccccceeeCCCeeE--ecccccccCCCCCCeeeeEEcCCCCCCCCCc
Q 038289 159 VNTAPWIFTVGASSIDRDFQSTVLLGNGKTI--KGSAISLSNLSSSMTYPIAFGKDIAAKFAPV 220 (226)
Q Consensus 159 ~~~~p~vitVgA~~~~~~~~~~s~~G~~~~i--~g~~i~~~~~~~~~~~~~v~~~~~~~~~~~~ 220 (226)
|+..+++|+||+++.++....|+++|....+ ||..++.... ...|..+.|||+++|..+.
T Consensus 171 pa~~~~vi~Vga~~~~~~~~~~s~~g~~~~~~apG~~i~~~~~--~~~~~~~~GTS~Aap~vag 232 (260)
T cd07484 171 PAAYPGAIAVAATDQDDKRASFSNYGKWVDVSAPGGGILSTTP--DGDYAYMSGTSMATPHVAG 232 (260)
T ss_pred CCCCCCeEEEEeeCCCCCcCCcCCCCCCceEEeCCCCcEeecC--CCCEEEeeeHHHHHHHHHH
Confidence 9999999999999999999999999987777 7777666554 4678899999999997765
No 13
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=99.97 E-value=1.2e-29 Score=220.07 Aligned_cols=207 Identities=25% Similarity=0.313 Sum_probs=148.9
Q ss_pred ccccccCCCC-ceEE-EEEcCCCcccCCCCCCCCCCCCCCCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCe
Q 038289 2 GITIQYCGCR-KLIG-ARFYSIPLTSNNHNTTRTTLAGSPRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSR 79 (226)
Q Consensus 2 gi~~~~~~~~-k~~g-~~~f~~~~~~~~~~~~~~~~~~~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~ 79 (226)
||.++|++.. ++.. .+.+...............+..++.|..||||||||+|++...+ .||||+|+
T Consensus 10 Gi~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~~~------------~GvAp~a~ 77 (294)
T cd07482 10 GIDPDHPDLKNSISSYSKNLVPKGGYDGKEAGETGDINDIVDKLGHGTAVAGQIAANGNI------------KGVAPGIG 77 (294)
T ss_pred CCCCCChhHhhcccccccccccCCCcCCccccccCCCCcCCCCCCcHhHHHHHHhcCCCC------------ceeCCCCE
Confidence 8999999975 3333 33332222221111112233456678899999999999986431 39999999
Q ss_pred EEEEeecCCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCC-----CCCccHHHHHHHHHhcCCcEEEEecCCCCC
Q 038289 80 IASYKACSEDG-CSGSAILQAMDDAIADGVDIISISIGMSSLFQS-----DYLNDPIAIGAFHAEQMGVMVICSAGNDGP 153 (226)
Q Consensus 80 l~~~rv~~~~~-~~~~~~~~ai~~a~~~g~~VinlS~G~~~~~~~-----~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~ 153 (226)
|+.+|+++..+ ....+++++|+||++++++|||||||....... ....+.+..+++++.++|++||+||||+|.
T Consensus 78 i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~ 157 (294)
T cd07482 78 IVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGL 157 (294)
T ss_pred EEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCc
Confidence 99999998766 488999999999999999999999998643211 112244566667888999999999999996
Q ss_pred CC----------------------CCCCCCCCCeEEEeceecCCccccceeeCCC-eeE--eccccccc-----------
Q 038289 154 DP----------------------STVVNTAPWIFTVGASSIDRDFQSTVLLGNG-KTI--KGSAISLS----------- 197 (226)
Q Consensus 154 ~~----------------------~~~~~~~p~vitVgA~~~~~~~~~~s~~G~~-~~i--~g~~i~~~----------- 197 (226)
.. ..+++..+++|+|||++.++.++.||++|.. ..+ ||..+...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~~~~~~~~~~S~~g~~~~~~~apG~~~~~~~~~~~~~~~~~ 237 (294)
T cd07482 158 DVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSATDNNGNLSSFSNYGNSRIDLAAPGGDFLLLDQYGKEKWVNN 237 (294)
T ss_pred ccccccccccccccccccccCCcceecccccCceEEEEeeCCCCCcCccccCCCCcceEECCCCCcccccccCccccccc
Confidence 54 2244567899999999999999999998753 333 66655311
Q ss_pred ---------CCCCCCeeeeEEcCCCCCCCCCc
Q 038289 198 ---------NLSSSMTYPIAFGKDIAAKFAPV 220 (226)
Q Consensus 198 ---------~~~~~~~~~~v~~~~~~~~~~~~ 220 (226)
.......|..+.|||+++|.+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG 269 (294)
T cd07482 238 GLMTKEQILTTAPEGGYAYMYGTSLAAPKVSG 269 (294)
T ss_pred cccccceeeecccCCceEeecchhhhhHHHHH
Confidence 11234568889999999998766
No 14
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.2e-30 Score=229.43 Aligned_cols=185 Identities=21% Similarity=0.227 Sum_probs=162.0
Q ss_pred ccccccCCC-CceEEEEEcCCCcccCCCCCCCCCCCCCCCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCeE
Q 038289 2 GITIQYCGC-RKLIGARFYSIPLTSNNHNTTRTTLAGSPRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSRI 80 (226)
Q Consensus 2 gi~~~~~~~-~k~~g~~~f~~~~~~~~~~~~~~~~~~~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~l 80 (226)
||+|.|++. .|.+-+..+..+++ ..|++||||||||+|+++. .|||.+++|
T Consensus 229 GVni~H~dFegRa~wGa~i~~~~~--------------~~D~nGHGTH~AG~I~sKt--------------~GvAK~s~l 280 (501)
T KOG1153|consen 229 GVNIEHPDFEGRAIWGATIPPKDG--------------DEDCNGHGTHVAGLIGSKT--------------FGVAKNSNL 280 (501)
T ss_pred cccccccccccceecccccCCCCc--------------ccccCCCcceeeeeeeccc--------------cccccccce
Confidence 899999996 55555555554432 3489999999999999986 399999999
Q ss_pred EEEeecCCCC-CCHHHHHHHHHHHHHC---------CCcEEEEcccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEecCC
Q 038289 81 ASYKACSEDG-CSGSAILQAMDDAIAD---------GVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGN 150 (226)
Q Consensus 81 ~~~rv~~~~~-~~~~~~~~ai~~a~~~---------g~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN 150 (226)
+++||+.+.+ .+.+++++.+++++++ +.-|.|||+|+... .++..++++|.+.|+++++||||
T Consensus 281 vaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~S-------~aLn~AV~~A~~~Gi~fa~AAGN 353 (501)
T KOG1153|consen 281 VAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFRS-------AALNMAVNAASERGIHFAVAAGN 353 (501)
T ss_pred EEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCccc-------HHHHHHHHHHhhcCeEEEEcCCC
Confidence 9999999988 8999999999999876 68899999999875 57888889999999999999999
Q ss_pred CCCCCCCC-CCCCCCeEEEeceecCCccccceeeCCCeeE--ecccccccCCCCCCeeeeEEcCCCCCCCCCcc
Q 038289 151 DGPDPSTV-VNTAPWIFTVGASSIDRDFQSTVLLGNGKTI--KGSAISLSNLSSSMTYPIAFGKDIAAKFAPVS 221 (226)
Q Consensus 151 ~g~~~~~~-~~~~p~vitVgA~~~~~~~~~~s~~G~~~~i--~g~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~ 221 (226)
+..+.|.+ |+.+..+|+|||++..++++.|||||..+.+ ||.-|.+.+.......-++.||+|+.|.+++.
T Consensus 354 e~eDAC~~SPass~~aITVGAst~~D~iA~FSN~G~CVdiFAPGv~IlSs~iGs~~at~ilSGTSMasPhvaG~ 427 (501)
T KOG1153|consen 354 EHEDACNSSPASSKKAITVGASTKNDTIAFFSNWGKCVDIFAPGVNILSSWIGSNNATAILSGTSMASPHVAGL 427 (501)
T ss_pred cchhhhccCcccccccEEecccccccchhhhcCccceeeeecCchhhhhhhhcCccchheeecccccCcchhhh
Confidence 99887765 5788999999999999999999999999999 88888888877778999999999999999883
No 15
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=99.97 E-value=6.5e-30 Score=214.21 Aligned_cols=190 Identities=25% Similarity=0.315 Sum_probs=153.5
Q ss_pred ccccccCCC-CceEEEEEcCCCcccCCCCCCCCCCCCCCCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCeE
Q 038289 2 GITIQYCGC-RKLIGARFYSIPLTSNNHNTTRTTLAGSPRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSRI 80 (226)
Q Consensus 2 gi~~~~~~~-~k~~g~~~f~~~~~~~~~~~~~~~~~~~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~l 80 (226)
||..+|+.. ++++..++|..+.. ..+.|..+||||||+||++...+. .+.|+||+++|
T Consensus 10 Gv~~~h~~l~~~~~~~~~~~~~~~------------~~~~~~~~HGT~vA~ii~~~~~~~---------~~~giap~a~i 68 (229)
T cd07477 10 GIDSSHPDLKLNIVGGANFTGDDN------------NDYQDGNGHGTHVAGIIAALDNGV---------GVVGVAPEADL 68 (229)
T ss_pred CCCCCChhHhccccCcccccCCCC------------CCCCCCCCCHHHHHHHHhcccCCC---------ccEeeCCCCEE
Confidence 778888875 34555555544321 345678999999999999986433 23699999999
Q ss_pred EEEeecCCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEecCCCCCCCCCC-
Q 038289 81 ASYKACSEDG-CSGSAILQAMDDAIADGVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGNDGPDPSTV- 158 (226)
Q Consensus 81 ~~~rv~~~~~-~~~~~~~~ai~~a~~~g~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~- 158 (226)
+.+|++...+ ....+++++++|+++++++|||||||.... . ..+..+++++.++|++||+||||++......
T Consensus 69 ~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~~--~----~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~ 142 (229)
T cd07477 69 YAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPSD--S----PALREAIKKAYAAGILVVAAAGNSGNGDSSYD 142 (229)
T ss_pred EEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCCC--C----HHHHHHHHHHHHCCCEEEEecCCCCCCCCCcc
Confidence 9999998765 677899999999999999999999998653 2 3445556888899999999999999876664
Q ss_pred -CCCCCCeEEEeceecCCccccceeeCCCeeE--ecccccccCCCCCCeeeeEEcCCCCCCCCCc
Q 038289 159 -VNTAPWIFTVGASSIDRDFQSTVLLGNGKTI--KGSAISLSNLSSSMTYPIAFGKDIAAKFAPV 220 (226)
Q Consensus 159 -~~~~p~vitVgA~~~~~~~~~~s~~G~~~~i--~g~~i~~~~~~~~~~~~~v~~~~~~~~~~~~ 220 (226)
|+..+++|+||+++.++.+..++++|....+ ||..+..... ...|..+.|||+++|.++.
T Consensus 143 ~pa~~~~vi~Vga~~~~~~~~~~s~~g~~~~~~apg~~i~~~~~--~~~~~~~~GTS~Aap~vag 205 (229)
T cd07477 143 YPAKYPSVIAVGAVDSNNNRASFSSTGPEVELAAPGVDILSTYP--NNDYAYLSGTSMATPHVAG 205 (229)
T ss_pred CCCCCCCEEEEEeecCCCCcCCccCCCCCceEEeCCCCeEEecC--CCCEEEEccHHHHHHHHHH
Confidence 7888999999999999999999999987766 7777766554 4678899999999998776
No 16
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.96 E-value=2.6e-29 Score=213.91 Aligned_cols=196 Identities=22% Similarity=0.263 Sum_probs=151.9
Q ss_pred ccccccCCC-CceEEEEEcCCCcccCCCCCCCCCCCCCCCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCeE
Q 038289 2 GITIQYCGC-RKLIGARFYSIPLTSNNHNTTRTTLAGSPRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSRI 80 (226)
Q Consensus 2 gi~~~~~~~-~k~~g~~~f~~~~~~~~~~~~~~~~~~~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~l 80 (226)
||+++|++. ++++..++|..+. ......+.|..+|||||||||+++..+. ...||||+++|
T Consensus 10 Gv~~~hp~l~~~~~~~~~~~~~~---------~~~~~~~~d~~~HGT~vAgiia~~~~~~---------~~~GvAp~a~i 71 (254)
T cd07490 10 GVDADHPDLAGRVAQWADFDENR---------RISATEVFDAGGHGTHVSGTIGGGGAKG---------VYIGVAPEADL 71 (254)
T ss_pred CCCCCCcchhcccCCceeccCCC---------CCCCCCCCCCCCcHHHHHHHHhcCCCCC---------CEEEECCCCEE
Confidence 889999987 5566666665431 1222456678999999999999986522 23599999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCCCccHHHHHHHHHhc-CCcEEEEecCCCCCCCCCCC
Q 038289 81 ASYKACSEDGCSGSAILQAMDDAIADGVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQ-MGVMVICSAGNDGPDPSTVV 159 (226)
Q Consensus 81 ~~~rv~~~~~~~~~~~~~ai~~a~~~g~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~-~Gi~vV~AAGN~g~~~~~~~ 159 (226)
+.+|++...+....+++++|+|+++++++|||||||.... . ...+...++...+ +|++||+||||++.....+|
T Consensus 72 ~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~--~---~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~p 146 (254)
T cd07490 72 LHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYY--S---EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSP 146 (254)
T ss_pred EEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCC--C---CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCC
Confidence 9999998766788999999999999999999999998763 1 3444444444443 69999999999998877778
Q ss_pred CCCCCeEEEeceecCCccccceeeCC-------------------CeeEecccccccC--CCCCCeeeeEEcCCCCCCCC
Q 038289 160 NTAPWIFTVGASSIDRDFQSTVLLGN-------------------GKTIKGSAISLSN--LSSSMTYPIAFGKDIAAKFA 218 (226)
Q Consensus 160 ~~~p~vitVgA~~~~~~~~~~s~~G~-------------------~~~i~g~~i~~~~--~~~~~~~~~v~~~~~~~~~~ 218 (226)
+..+++|+|||++.++....++++|. .+..||..++... ......|..+.|||+++|.+
T Consensus 147 a~~~~vi~Vga~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~d~~apG~~i~~~~~~~~~~~~~~~~~GTS~AaP~v 226 (254)
T cd07490 147 GSAYAALSVGAVDRDDEDAWFSSFGSSGASLVSAPDSPPDEYTKPDVAAPGVDVYSARQGANGDGQYTRLSGTSMAAPHV 226 (254)
T ss_pred ccCCceeEEecccccCCccCccCCcccccccccCCCCCccCCcCceEEeccCCeEccccCCCCCCCeeecccHHHHHHHH
Confidence 88999999999999999999997772 1233777766621 23456788999999999987
Q ss_pred Cc
Q 038289 219 PV 220 (226)
Q Consensus 219 ~~ 220 (226)
++
T Consensus 227 aG 228 (254)
T cd07490 227 AG 228 (254)
T ss_pred HH
Confidence 65
No 17
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=99.96 E-value=3.3e-29 Score=215.17 Aligned_cols=170 Identities=26% Similarity=0.285 Sum_probs=139.4
Q ss_pred CCCCCCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCeEEEEeecCCCCCCHHHHHHHHHHHHH---------
Q 038289 35 LAGSPRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSRIASYKACSEDGCSGSAILQAMDDAIA--------- 105 (226)
Q Consensus 35 ~~~~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~l~~~rv~~~~~~~~~~~~~ai~~a~~--------- 105 (226)
....|.|+.+|||||||||++...+.. ..||||+|+|+.+|++........+++++++|++.
T Consensus 44 ~~~~~~d~~~HGT~vagii~g~~~~~~---------~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 114 (264)
T cd07481 44 NTPLPYDDNGHGTHTMGTMVGNDGDGQ---------QIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPA 114 (264)
T ss_pred CCCCCCCCCCchhhhhhheeecCCCCC---------ceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhccccccccc
Confidence 346678899999999999998754322 25999999999999998777788899999999975
Q ss_pred ---CCCcEEEEcccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEecCCCCCCCCC---CCCCCCCeEEEeceecCCcccc
Q 038289 106 ---DGVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGNDGPDPST---VVNTAPWIFTVGASSIDRDFQS 179 (226)
Q Consensus 106 ---~g~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~~p~vitVgA~~~~~~~~~ 179 (226)
.+++|||||||.... ....+..+++.+.++|++||+||||++..... +|+..+++|+|||++.++.+..
T Consensus 115 ~~~~~~~Iin~S~G~~~~-----~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~ 189 (264)
T cd07481 115 DPDLAPDVINNSWGGPSG-----DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRNDVLAD 189 (264)
T ss_pred ccccCCeEEEeCCCcCCC-----CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCCCCCcc
Confidence 789999999998652 23445556678888999999999999875443 5677899999999999999999
Q ss_pred ceeeCCCe------eE--ecccccccCCCCCCeeeeEEcCCCCCCCCCc
Q 038289 180 TVLLGNGK------TI--KGSAISLSNLSSSMTYPIAFGKDIAAKFAPV 220 (226)
Q Consensus 180 ~s~~G~~~------~i--~g~~i~~~~~~~~~~~~~v~~~~~~~~~~~~ 220 (226)
||++|... .+ ||..+.+..+ ...|..+.|||+++|.++.
T Consensus 190 ~S~~g~~~~~~~~~dv~ApG~~i~s~~~--~~~~~~~~GTS~AaP~vaG 236 (264)
T cd07481 190 FSSRGPSTYGRIKPDISAPGVNIRSAVP--GGGYGSSSGTSMAAPHVAG 236 (264)
T ss_pred ccCCCCCCCCCcCceEEECCCCeEEecC--CCceEeeCcHHHHHHHHHH
Confidence 99998654 44 7887776664 4788999999999998776
No 18
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=99.96 E-value=6.3e-29 Score=212.09 Aligned_cols=184 Identities=24% Similarity=0.263 Sum_probs=153.0
Q ss_pred ccccccCCC-CceEEEEEcCCCcccCCCCCCCCCCCCCCCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCeE
Q 038289 2 GITIQYCGC-RKLIGARFYSIPLTSNNHNTTRTTLAGSPRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSRI 80 (226)
Q Consensus 2 gi~~~~~~~-~k~~g~~~f~~~~~~~~~~~~~~~~~~~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~l 80 (226)
||..+|++. ++++..++|..+. ...|..+|||||||||+++. .||||+++|
T Consensus 35 Gi~~~h~~~~~~~~~~~~~~~~~--------------~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i 86 (255)
T cd04077 35 GIRTTHVEFGGRAIWGADFVGGD--------------PDSDCNGHGTHVAGTVGGKT--------------YGVAKKANL 86 (255)
T ss_pred CCCCCChhhhCCeeeeeecCCCC--------------CCCCCCccHHHHHHHHHccc--------------cCcCCCCeE
Confidence 788899976 4556666665442 15678999999999999863 499999999
Q ss_pred EEEeecCCCC-CCHHHHHHHHHHHHHC-----CCcEEEEcccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEecCCCCCC
Q 038289 81 ASYKACSEDG-CSGSAILQAMDDAIAD-----GVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGNDGPD 154 (226)
Q Consensus 81 ~~~rv~~~~~-~~~~~~~~ai~~a~~~-----g~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~ 154 (226)
+.+|++...+ ...+.++++|+|+++. +++|||||||.... ..+..+++++.++|++||+||||++.+
T Consensus 87 ~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~~-------~~~~~~~~~~~~~g~liV~aaGN~g~~ 159 (255)
T cd04077 87 VAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGAS-------TALDAAVAAAVNAGVVVVVAAGNSNQD 159 (255)
T ss_pred EEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCCC-------HHHHHHHHHHHHCCCEEEEeCCCCCCC
Confidence 9999998764 7788999999999987 58999999997652 455666688999999999999999987
Q ss_pred C-CCCCCCCCCeEEEeceecCCccccceeeCCCeeE--ecccccccCCCCCCeeeeEEcCCCCCCCCCc
Q 038289 155 P-STVVNTAPWIFTVGASSIDRDFQSTVLLGNGKTI--KGSAISLSNLSSSMTYPIAFGKDIAAKFAPV 220 (226)
Q Consensus 155 ~-~~~~~~~p~vitVgA~~~~~~~~~~s~~G~~~~i--~g~~i~~~~~~~~~~~~~v~~~~~~~~~~~~ 220 (226)
. ...|+..+++|+|||++.++.+..||++|..+.+ ||..+..........|..+.|||+++|.+++
T Consensus 160 ~~~~~pa~~~~vi~Vga~~~~~~~~~~S~~g~~~~i~apG~~i~~~~~~~~~~~~~~~GTS~Aap~vaG 228 (255)
T cd04077 160 ACNYSPASAPEAITVGATDSDDARASFSNYGSCVDIFAPGVDILSAWIGSDTATATLSGTSMAAPHVAG 228 (255)
T ss_pred CCCcCccCCCceEEEeccCCCCCccCcccCCCCCcEEeCCCCeEecccCCCCcEEeeCcHHHHHHHHHH
Confidence 5 3556788999999999999999999999988766 7888777665556789999999999998776
No 19
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.96 E-value=8.7e-29 Score=217.60 Aligned_cols=184 Identities=24% Similarity=0.206 Sum_probs=122.9
Q ss_pred CCCCCCCCChHHHHHHhhccCCCCCccccc-CCCcccccCCCCeEEEEeecCCCC-CCHHH-------HHHHHHHH--HH
Q 038289 37 GSPRDSVGHGTHTASTAAGAHVANASYFGL-ARGTARGGSPSSRIASYKACSEDG-CSGSA-------ILQAMDDA--IA 105 (226)
Q Consensus 37 ~~~~d~~gHGThvAgiiag~~~~~~~~~g~-~~~~~~GvAP~a~l~~~rv~~~~~-~~~~~-------~~~ai~~a--~~ 105 (226)
..+.|++||||||||||+|+.++..+.++. ....+.||||+|+|+++|++...+ ..... +..+++|. .+
T Consensus 50 ~~~~D~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 129 (311)
T cd07497 50 VIMYDFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGG 129 (311)
T ss_pred CCCCCccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccC
Confidence 457899999999999999986543222111 122457999999999999987543 22222 22244544 46
Q ss_pred CCCcEEEEcccCCCCCCCCC--CccHHHHHHHH-HhcCCcEEEEecCCCCCCCC--CCCCCCCCeEEEeceecC------
Q 038289 106 DGVDIISISIGMSSLFQSDY--LNDPIAIGAFH-AEQMGVMVICSAGNDGPDPS--TVVNTAPWIFTVGASSID------ 174 (226)
Q Consensus 106 ~g~~VinlS~G~~~~~~~~~--~~~~~~~~~~~-a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVgA~~~~------ 174 (226)
++++|||||||........+ ..+..+...+. +.++|++||+||||+|++.. ..|+..+++|+|||++..
T Consensus 130 ~~~~VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~ 209 (311)
T cd07497 130 PRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFY 209 (311)
T ss_pred CCceEEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchh
Confidence 79999999999854210111 11122222232 24899999999999998643 356678999999999753
Q ss_pred ---------CccccceeeCCC--------eeEecccccccCCC--------CCCeeeeEEcCCCCCCCCCc
Q 038289 175 ---------RDFQSTVLLGNG--------KTIKGSAISLSNLS--------SSMTYPIAFGKDIAAKFAPV 220 (226)
Q Consensus 175 ---------~~~~~~s~~G~~--------~~i~g~~i~~~~~~--------~~~~~~~v~~~~~~~~~~~~ 220 (226)
+.++.||++|.. +..||..+++..+. ....|..+.||||++|.++.
T Consensus 210 ~~~~~~~~~~~~~~fSs~Gp~~~g~~kPdv~ApG~~i~s~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VaG 280 (311)
T cd07497 210 LFGYLPGGSGDVVSWSSRGPSIAGDPKPDLAAIGAFAWAPGRVLDSGGALDGNEAFDLFGGTSMATPMTAG 280 (311)
T ss_pred hhccccCCCCCccccccCCCCcccCCCCceeccCcceEeecccCCCCcccCCCcceeeecchhhhhHHHHH
Confidence 456789999853 33377665543321 12368899999999998765
No 20
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.96 E-value=6.6e-28 Score=205.91 Aligned_cols=200 Identities=24% Similarity=0.357 Sum_probs=155.0
Q ss_pred ccccccCCC-CceEEEEEcCCCcccCCCCCCCCCCCCCCCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCeE
Q 038289 2 GITIQYCGC-RKLIGARFYSIPLTSNNHNTTRTTLAGSPRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSRI 80 (226)
Q Consensus 2 gi~~~~~~~-~k~~g~~~f~~~~~~~~~~~~~~~~~~~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~l 80 (226)
||..+|++. ++++....+.... .......|..+|||||||||+++..+. ...+.||||+|+|
T Consensus 12 Gv~~~h~~l~~~~~~~~~~~~~~----------~~~~~~~d~~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i 74 (264)
T cd07487 12 GIDAPHPDFDGRIIRFADFVNTV----------NGRTTPYDDNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANL 74 (264)
T ss_pred CCCCCCccccccccccccccccc----------cCCCCCCCCCCchHHHHHHHhcCCccc-------CCceEEECCCCeE
Confidence 788888886 3333333332211 122456678899999999999987542 1234799999999
Q ss_pred EEEeecCCCC-CCHHHHHHHHHHHHHC----CCcEEEEcccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEecCCCCCCC
Q 038289 81 ASYKACSEDG-CSGSAILQAMDDAIAD----GVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGNDGPDP 155 (226)
Q Consensus 81 ~~~rv~~~~~-~~~~~~~~ai~~a~~~----g~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~ 155 (226)
+.+|++...+ .....++++|+|+++. +++|||||||.... .......+..+++++.++|++||+||||++...
T Consensus 75 ~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~--~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~ 152 (264)
T cd07487 75 VGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPD--PSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGP 152 (264)
T ss_pred EEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCC--CCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCC
Confidence 9999998766 6788999999999998 99999999998764 244556777788899999999999999999876
Q ss_pred C--CCCCCCCCeEEEeceecCCc----cccceeeCCC--------eeEecccccccC-------CCCCCeeeeEEcCCCC
Q 038289 156 S--TVVNTAPWIFTVGASSIDRD----FQSTVLLGNG--------KTIKGSAISLSN-------LSSSMTYPIAFGKDIA 214 (226)
Q Consensus 156 ~--~~~~~~p~vitVgA~~~~~~----~~~~s~~G~~--------~~i~g~~i~~~~-------~~~~~~~~~v~~~~~~ 214 (226)
. ..|+..+++|+|||++.++. +..|+++|.. +..||..+.... ......|..+.|||++
T Consensus 153 ~~~~~p~~~~~vi~Vga~~~~~~~~~~~~~~s~~G~~~~~~~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~GTS~A 232 (264)
T cd07487 153 GTITSPGNSPKVITVGAVDDNGPHDDGISYFSSRGPTGDGRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFEMSGTSMA 232 (264)
T ss_pred CccCCcccCCCceEEEeccCCCCCCccccccccCCCCCCCCcCCCEEccccceEeccccccccCCCCCCceEeccccchH
Confidence 5 55677899999999999988 6889988853 334788777742 2245678899999999
Q ss_pred CCCCCc
Q 038289 215 AKFAPV 220 (226)
Q Consensus 215 ~~~~~~ 220 (226)
+|-++.
T Consensus 233 ap~vaG 238 (264)
T cd07487 233 TPHVSG 238 (264)
T ss_pred HHHHHH
Confidence 998765
No 21
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.95 E-value=1.1e-27 Score=210.43 Aligned_cols=198 Identities=24% Similarity=0.300 Sum_probs=149.1
Q ss_pred ccccccCCCC-------ceEEEEEcCCCcccCCCCCCCCCCCCCCCCCCCChHHHHHHhhccCCCCCcccccCCCccccc
Q 038289 2 GITIQYCGCR-------KLIGARFYSIPLTSNNHNTTRTTLAGSPRDSVGHGTHTASTAAGAHVANASYFGLARGTARGG 74 (226)
Q Consensus 2 gi~~~~~~~~-------k~~g~~~f~~~~~~~~~~~~~~~~~~~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~Gv 74 (226)
||.++|++.. ++.+.++|..+... ..+.......|.|..+||||||+||+++..+ ..+.||
T Consensus 23 Gid~~hp~l~~~~~~~~~~~~~~d~~~~~~~---~~~~~~~~~~~~d~~gHGT~vAgiia~~~~~---------~~~~Gi 90 (312)
T cd07489 23 GIDYTHPALGGCFGPGCKVAGGYDFVGDDYD---GTNPPVPDDDPMDCQGHGTHVAGIIAANPNA---------YGFTGV 90 (312)
T ss_pred CCCCCChhhhcCCCCCceeccccccCCcccc---cccCCCCCCCCCCCCCcHHHHHHHHhcCCCC---------CceEEE
Confidence 7889998752 34455566544321 1111233356778899999999999998754 123799
Q ss_pred CCCCeEEEEeecCCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEecCCCCC
Q 038289 75 SPSSRIASYKACSEDG-CSGSAILQAMDDAIADGVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGNDGP 153 (226)
Q Consensus 75 AP~a~l~~~rv~~~~~-~~~~~~~~ai~~a~~~g~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~ 153 (226)
||+|+|+.+|++...+ .....++++++++++++++|||||||.... +....+...++++.++|+++|+|+||++.
T Consensus 91 Ap~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~~~----~~~~~~~~~~~~~~~~gv~iv~aaGN~g~ 166 (312)
T cd07489 91 APEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGPSG----WSEDPWAVVASRIVDAGVVVTIAAGNDGE 166 (312)
T ss_pred CCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCcCCC----CCCCHHHHHHHHHHHCCCEEEEECCCCCC
Confidence 9999999999998655 778889999999999999999999998653 22355666678888999999999999987
Q ss_pred CCC---CCCCCCCCeEEEeceecCCccccceeeCCCe--------eEecccccccCCCCCCeeeeEEcCCCCCCCCCc
Q 038289 154 DPS---TVVNTAPWIFTVGASSIDRDFQSTVLLGNGK--------TIKGSAISLSNLSSSMTYPIAFGKDIAAKFAPV 220 (226)
Q Consensus 154 ~~~---~~~~~~p~vitVgA~~~~~~~~~~s~~G~~~--------~i~g~~i~~~~~~~~~~~~~v~~~~~~~~~~~~ 220 (226)
... ..++..+++|+||+++ ..++++|... ..||..+....+.....|..+.|||+++|.++.
T Consensus 167 ~~~~~~~~p~~~~~vi~Vga~~-----~~~s~~g~~~~~~~kpdv~ApG~~i~~~~~~~~~~~~~~~GTS~Aap~vaG 239 (312)
T cd07489 167 RGPFYASSPASGRGVIAVASVD-----SYFSSWGPTNELYLKPDVAAPGGNILSTYPLAGGGYAVLSGTSMATPYVAG 239 (312)
T ss_pred CCCCcccCCccCCCeEEEEEec-----CCccCCCCCCCCCcCccEEcCCCCEEEeeeCCCCceEeeccHHHHHHHHHH
Confidence 543 3356779999999988 5567777543 237777776665445579999999999998765
No 22
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.95 E-value=4.7e-28 Score=210.75 Aligned_cols=198 Identities=21% Similarity=0.213 Sum_probs=140.8
Q ss_pred ccccccCCCCceEEEEEcCCCcccCCCCCCCCCCCCCCCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCeEE
Q 038289 2 GITIQYCGCRKLIGARFYSIPLTSNNHNTTRTTLAGSPRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSRIA 81 (226)
Q Consensus 2 gi~~~~~~~~k~~g~~~f~~~~~~~~~~~~~~~~~~~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~l~ 81 (226)
||..+|+++...+....+.... ...+.|..||||||||||++...+.. ...|+||+++|+
T Consensus 9 Gi~~~hp~l~~~~~~~~~~~~~------------~~~~~d~~gHGT~vAgiia~~~~~~~--------~~~gvap~~~l~ 68 (291)
T cd04847 9 GINRGHPLLAPALAEDDLDSDE------------PGWTADDLGHGTAVAGLALYGDLTLP--------GNGLPRPGCRLE 68 (291)
T ss_pred CCCCCChhhhhhhccccccccC------------CCCcCCCCCChHHHHHHHHcCcccCC--------CCCCcccceEEE
Confidence 8889999963333222111111 01167899999999999997654321 235999999999
Q ss_pred EEeecCCCC-----CCHHHHHHHHHHHHHCC---CcEEEEcccCCCCCCCCCCccHHHHHH-HHHhcCCcEEEEecCCCC
Q 038289 82 SYKACSEDG-----CSGSAILQAMDDAIADG---VDIISISIGMSSLFQSDYLNDPIAIGA-FHAEQMGVMVICSAGNDG 152 (226)
Q Consensus 82 ~~rv~~~~~-----~~~~~~~~ai~~a~~~g---~~VinlS~G~~~~~~~~~~~~~~~~~~-~~a~~~Gi~vV~AAGN~g 152 (226)
.+|++...+ ....+++++|+|++++. ++|||||||........ ....+..++ +.+.++|++||+||||++
T Consensus 69 ~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~-~~~~~~~~id~~a~~~gvlvV~aAGN~g 147 (291)
T cd04847 69 SVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDG-RPSSWAAALDQLAAEYDVLFVVSAGNLG 147 (291)
T ss_pred EEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCC-CCCcHHHHHHHHhccCCeEEEEECCCCC
Confidence 999999763 56788999999999853 49999999987542111 112333333 346789999999999999
Q ss_pred CCCCC------------CCCCCCCeEEEeceecCCccccceeeCCC----------------------eeEecccccccC
Q 038289 153 PDPST------------VVNTAPWIFTVGASSIDRDFQSTVLLGNG----------------------KTIKGSAISLSN 198 (226)
Q Consensus 153 ~~~~~------------~~~~~p~vitVgA~~~~~~~~~~s~~G~~----------------------~~i~g~~i~~~~ 198 (226)
..... .|+..+++|+|||++.++....+++++.. +..||..+....
T Consensus 148 ~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~~~~~~~~~~~~fs~~Gp~~~~~~KPDl~apG~~i~~~~ 227 (291)
T cd04847 148 DDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRARYSAVGPAPAGATTSSGPGSPGPIKPDVVAFGGNLAYDP 227 (291)
T ss_pred ccccccccccccccccCCHHHhhhheeeeeeecCccCCCcccccccccccCCCccccCCCCCCCcCCcEEeeCCceeecC
Confidence 86543 24567899999999999998888777642 344787765422
Q ss_pred ----------------CCCCCeeeeEEcCCCCCCCCCc
Q 038289 199 ----------------LSSSMTYPIAFGKDIAAKFAPV 220 (226)
Q Consensus 199 ----------------~~~~~~~~~v~~~~~~~~~~~~ 220 (226)
......|....||||++|.++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag 265 (291)
T cd04847 228 SGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAAR 265 (291)
T ss_pred CCCCccCcceeeecccCCCCCcccccccchHHHHHHHH
Confidence 2235678899999999998765
No 23
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.95 E-value=3.5e-27 Score=201.37 Aligned_cols=170 Identities=24% Similarity=0.289 Sum_probs=139.3
Q ss_pred CCCCCCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCeEEEEeecCCCC-CCHHHHHHHHHHHHHCCCcEEEE
Q 038289 35 LAGSPRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSRIASYKACSEDG-CSGSAILQAMDDAIADGVDIISI 113 (226)
Q Consensus 35 ~~~~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~l~~~rv~~~~~-~~~~~~~~ai~~a~~~g~~Vinl 113 (226)
...++.|..+||||||+||++...+... +.||||+|+|+.+|++...+ .....++++|+++++.+++|||+
T Consensus 55 ~~~~~~d~~~HGT~va~ii~~~~~~~~~--------~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~ 126 (259)
T cd07473 55 NDNDPMDDNGHGTHVAGIIGAVGNNGIG--------IAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINN 126 (259)
T ss_pred CCCCCCCCCCcHHHHHHHHHCcCCCCCc--------eEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEe
Confidence 3455678899999999999998765433 36999999999999998766 78899999999999999999999
Q ss_pred cccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEecCCCCCC---CCCCCC--CCCCeEEEeceecCCccccceeeCCC-e
Q 038289 114 SIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGNDGPD---PSTVVN--TAPWIFTVGASSIDRDFQSTVLLGNG-K 187 (226)
Q Consensus 114 S~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~---~~~~~~--~~p~vitVgA~~~~~~~~~~s~~G~~-~ 187 (226)
|||.... ...+..+++++.++|++||+||||++.. ...++. ..+++|+||+++..+....++++|.. .
T Consensus 127 S~G~~~~------~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~~~~~~~s~~g~~~~ 200 (259)
T cd07473 127 SWGGGGP------SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSNDALASFSNYGKKTV 200 (259)
T ss_pred CCCCCCC------CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCCCCcCcccCCCCCCc
Confidence 9998753 3556666788889999999999999876 234444 45899999999999999999999853 3
Q ss_pred eE--ecccccccCCCCCCeeeeEEcCCCCCCCCCc
Q 038289 188 TI--KGSAISLSNLSSSMTYPIAFGKDIAAKFAPV 220 (226)
Q Consensus 188 ~i--~g~~i~~~~~~~~~~~~~v~~~~~~~~~~~~ 220 (226)
.+ ||..++... ....|..+.|||+++|-++.
T Consensus 201 ~~~apG~~~~~~~--~~~~~~~~~GTS~AaP~vaG 233 (259)
T cd07473 201 DLAAPGVDILSTS--PGGGYGYMSGTSMATPHVAG 233 (259)
T ss_pred EEEeccCCeEecc--CCCcEEEeccHhHHHHHHHH
Confidence 44 777776644 35678899999999997765
No 24
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=99.95 E-value=1.2e-27 Score=212.62 Aligned_cols=173 Identities=27% Similarity=0.336 Sum_probs=137.1
Q ss_pred CCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCeEEEEeecCC--CC-CCHHHHHHHHHHHHHCCCcEEEEcc
Q 038289 39 PRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSRIASYKACSE--DG-CSGSAILQAMDDAIADGVDIISISI 115 (226)
Q Consensus 39 ~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~l~~~rv~~~--~~-~~~~~~~~ai~~a~~~g~~VinlS~ 115 (226)
..|..+|||||||||+|...+... ...+.||||+|+|+.+|++.. .. .....++++++++++.+++||||||
T Consensus 78 ~~~~~~HGT~vagiiag~~~~~~~-----~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~ 152 (346)
T cd07475 78 EDDGSSHGMHVAGIVAGNGDEEDN-----GEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSL 152 (346)
T ss_pred CCCCCCcHHHHHHHHhcCCCcccc-----CCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 457899999999999998764321 224479999999999999973 33 7788999999999999999999999
Q ss_pred cCCCCCCCCCCccHHHHHHHHHhcCCcEEEEecCCCCCCCCC----------------CCCCCCCeEEEecee------c
Q 038289 116 GMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGNDGPDPST----------------VVNTAPWIFTVGASS------I 173 (226)
Q Consensus 116 G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~----------------~~~~~p~vitVgA~~------~ 173 (226)
|.... .......+..+++++.++|++||+||||++..... .+...+++|+|++++ .
T Consensus 153 G~~~~--~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~~~~~~ 230 (346)
T cd07475 153 GSTAG--FVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKKVPNPN 230 (346)
T ss_pred CcCCC--CCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeecccccCCCC
Confidence 98764 22455667777889999999999999999864321 234568999999998 6
Q ss_pred CCccccceeeCCC--------eeEecccccccCCCCCCeeeeEEcCCCCCCCCCc
Q 038289 174 DRDFQSTVLLGNG--------KTIKGSAISLSNLSSSMTYPIAFGKDIAAKFAPV 220 (226)
Q Consensus 174 ~~~~~~~s~~G~~--------~~i~g~~i~~~~~~~~~~~~~v~~~~~~~~~~~~ 220 (226)
.+.+..||++|.. +..||..+++... ...|..+.|||+++|-+++
T Consensus 231 ~~~~~~~S~~G~~~~~~~~pdi~apG~~i~s~~~--~~~~~~~~GTS~AaP~VaG 283 (346)
T cd07475 231 GGQMSGFSSWGPTPDLDLKPDITAPGGNIYSTVN--DNTYGYMSGTSMASPHVAG 283 (346)
T ss_pred CCccCCCcCCCCCcccCcCCeEEeCCCCeEEecC--CCceEeeCcHHHHHHHHHH
Confidence 6677888998854 3347777766654 4678899999999998766
No 25
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.95 E-value=7.9e-27 Score=202.75 Aligned_cols=207 Identities=29% Similarity=0.391 Sum_probs=153.2
Q ss_pred ccccccCCC-------CceEEEEEcCCCcccCCCCC--CCCCCCCCCCCCCCChHHHHHHhhccCCCCCcccccCCCccc
Q 038289 2 GITIQYCGC-------RKLIGARFYSIPLTSNNHNT--TRTTLAGSPRDSVGHGTHTASTAAGAHVANASYFGLARGTAR 72 (226)
Q Consensus 2 gi~~~~~~~-------~k~~g~~~f~~~~~~~~~~~--~~~~~~~~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~ 72 (226)
||..+|++. ++++..++|..+........ +.........|..+||||||++|+++..+... +.
T Consensus 12 Gi~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~vAgiiag~~~n~~~--------~~ 83 (295)
T cd07474 12 GIDYTHPDLGGPGFPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDATGHGTHVAGIIAGNGVNVGT--------IK 83 (295)
T ss_pred CcCCCCcccccCCCCCCceeeeeECccCCCCcccccccccccccCCCCCCCCcHHHHHHHHhcCCCccCc--------eE
Confidence 788999998 67888889876653321110 00001122456899999999999998765332 36
Q ss_pred ccCCCCeEEEEeecCCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEecCCC
Q 038289 73 GGSPSSRIASYKACSEDG-CSGSAILQAMDDAIADGVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGND 151 (226)
Q Consensus 73 GvAP~a~l~~~rv~~~~~-~~~~~~~~ai~~a~~~g~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~ 151 (226)
||||+++|+.+|++.... .....++++|+|+++++++|||||||.... .....+..+++++.++|++||+||||+
T Consensus 84 Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~~----~~~~~~~~~~~~~~~~gil~V~aAGN~ 159 (295)
T cd07474 84 GVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVN----GPDDPDAIAINNAVKAGVVVVAAAGNS 159 (295)
T ss_pred eECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC----CCCCHHHHHHHHHHhcCCEEEEECCCC
Confidence 999999999999998544 788999999999999999999999997653 134566677788999999999999999
Q ss_pred CCCCCCC--CCCCCCeEEEeceec-----CCccccceeeCC---------CeeEecccccccCCCCCCeeeeEEcCCCCC
Q 038289 152 GPDPSTV--VNTAPWIFTVGASSI-----DRDFQSTVLLGN---------GKTIKGSAISLSNLSSSMTYPIAFGKDIAA 215 (226)
Q Consensus 152 g~~~~~~--~~~~p~vitVgA~~~-----~~~~~~~s~~G~---------~~~i~g~~i~~~~~~~~~~~~~v~~~~~~~ 215 (226)
+...... ++..+++|+||+++. ......+++.+. .+..+|..+..........|....|||+++
T Consensus 160 g~~~~~~~~pa~~~~~i~Vga~~~~~~~~~~~~~~~~s~~~~~~~~~~kpdv~apG~~i~~~~~~~~~~~~~~~GTS~Aa 239 (295)
T cd07474 160 GPAPYTIGSPATAPSAITVGASTVADVAEADTVGPSSSRGPPTSDSAIKPDIVAPGVDIMSTAPGSGTGYARMSGTSMAA 239 (295)
T ss_pred CCCCCcccCCCcCCCeEEEeeeeccCcCCCCceeccCCCCCCCCCCCcCCCEECCcCceEeeccCCCCceEEeccHHHHH
Confidence 8765443 567899999999762 233444444442 123377777777654456789999999999
Q ss_pred CCCCc
Q 038289 216 KFAPV 220 (226)
Q Consensus 216 ~~~~~ 220 (226)
|-++.
T Consensus 240 P~vaG 244 (295)
T cd07474 240 PHVAG 244 (295)
T ss_pred HHHHH
Confidence 87765
No 26
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=99.95 E-value=3.6e-27 Score=204.16 Aligned_cols=159 Identities=23% Similarity=0.191 Sum_probs=119.5
Q ss_pred CCCCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCeEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEccc
Q 038289 37 GSPRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSRIASYKACSEDGCSGSAILQAMDDAIADGVDIISISIG 116 (226)
Q Consensus 37 ~~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~l~~~rv~~~~~~~~~~~~~ai~~a~~~g~~VinlS~G 116 (226)
..+.|..+||||||+||+ ||||+|+|+.+|+.. ..++++++|+|+++++++|||||||
T Consensus 42 ~~~~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~~----~~~~i~~ai~~a~~~g~~Vin~S~g 99 (275)
T cd05562 42 DGGSGGGDEGRAMLEIIH------------------DIAPGAELAFHTAGG----GELDFAAAIRALAAAGADIIVDDIG 99 (275)
T ss_pred CCCCCCCchHHHHHHHHh------------------ccCCCCEEEEEecCC----CHHHHHHHHHHHHHcCCCEEEeccc
Confidence 345688999999999995 899999999988754 4788999999999999999999999
Q ss_pred CCCCCCCCCCccHHHHHHHHHhcC-CcEEEEecCCCCCCCC-CCCCCCCCeEEEeceecCCccccce------------e
Q 038289 117 MSSLFQSDYLNDPIAIGAFHAEQM-GVMVICSAGNDGPDPS-TVVNTAPWIFTVGASSIDRDFQSTV------------L 182 (226)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~a~~~-Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgA~~~~~~~~~~s------------~ 182 (226)
.... ..+....+..+++++.++ |++||+||||++.... ..|+..|+||+|||++.++.+..++ +
T Consensus 100 ~~~~--~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~~~~~~s~~~~ 177 (275)
T cd05562 100 YLNE--PFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPAPGGTPSSFDP 177 (275)
T ss_pred ccCC--CcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcccccccccCCCcccccC
Confidence 8653 122334566677888887 9999999999998543 3467889999999999888776443 2
Q ss_pred eCC---------CeeE--ecccccccCCCCCCeeeeEEcCCCCCCCCCc
Q 038289 183 LGN---------GKTI--KGSAISLSNLSSSMTYPIAFGKDIAAKFAPV 220 (226)
Q Consensus 183 ~G~---------~~~i--~g~~i~~~~~~~~~~~~~v~~~~~~~~~~~~ 220 (226)
++. ...+ ||. +..........|..+.||||++|.+++
T Consensus 178 ~~~~~p~~~~~~~~di~Apgg-~~~~~~~~~~~~~~~sGTS~AaP~VaG 225 (275)
T cd05562 178 VGIRLPTPEVRQKPDVTAPDG-VNGTVDGDGDGPPNFFGTSAAAPHAAG 225 (275)
T ss_pred CcccCcCCCCCcCCeEEcCCc-ccccCCCcCCceeecccchHHHHHHHH
Confidence 221 2333 322 111122234678888999999998765
No 27
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=99.95 E-value=2.5e-27 Score=214.03 Aligned_cols=172 Identities=27% Similarity=0.265 Sum_probs=127.5
Q ss_pred CCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCeEEEEeecCCCC---CCHHHHHHHHHHHHHCCCcEEEEcc
Q 038289 39 PRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSRIASYKACSEDG---CSGSAILQAMDDAIADGVDIISISI 115 (226)
Q Consensus 39 ~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~l~~~rv~~~~~---~~~~~~~~ai~~a~~~g~~VinlS~ 115 (226)
-.|+.+|||||||||+|...+.. .+.||||+|+|+.+|+++... .....+++||++|++.+++||||||
T Consensus 181 ~~d~~gHGThVAGIIAg~~~~~~--------~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~Sl 252 (412)
T cd04857 181 VTDSGAHGTHVAGIAAAHFPEEP--------ERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSY 252 (412)
T ss_pred CCCCCCCHHHHHHHHhCCCCCCC--------ceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecC
Confidence 35889999999999999864432 236999999999999987542 2346799999999999999999999
Q ss_pred cCCCCCCCCCCccHHHHHHHHHhcCCcEEEEecCCCCCCCCCC--CC-CCCCeEEEeceec--------------CCccc
Q 038289 116 GMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGNDGPDPSTV--VN-TAPWIFTVGASSI--------------DRDFQ 178 (226)
Q Consensus 116 G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~--~~-~~p~vitVgA~~~--------------~~~~~ 178 (226)
|.... ........+...+.+.++|++||+||||+|+..++. |+ ..++||+|||+.. .+...
T Consensus 253 G~~~~--~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y~~~~~~~~~~~ 330 (412)
T cd04857 253 GEATH--WPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEYSLREKLPGNQY 330 (412)
T ss_pred CcCCC--CccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccccccccccCCccc
Confidence 98653 111112222222344579999999999999876654 33 4689999999853 23456
Q ss_pred cceeeCCC--------eeEecccccccCCCCCCeeeeEEcCCCCCCCCCc
Q 038289 179 STVLLGNG--------KTIKGSAISLSNLSSSMTYPIAFGKDIAAKFAPV 220 (226)
Q Consensus 179 ~~s~~G~~--------~~i~g~~i~~~~~~~~~~~~~v~~~~~~~~~~~~ 220 (226)
.||++|.. +..||..|.+........|.+..||||++|.+++
T Consensus 331 ~fSSrGP~~dG~~~pdI~APG~~I~s~p~~~~~~~~~~sGTSmAaP~VAG 380 (412)
T cd04857 331 TWSSRGPTADGALGVSISAPGGAIASVPNWTLQGSQLMNGTSMSSPNACG 380 (412)
T ss_pred cccccCCcccCCcCceEEeCCCcEEEcccCCCCCeEEecccHHHHHHHHH
Confidence 68888854 3338888776543344678999999999998766
No 28
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.94 E-value=1.2e-26 Score=194.17 Aligned_cols=183 Identities=18% Similarity=0.141 Sum_probs=139.5
Q ss_pred ccccccCCCC-ceEEEEEcCCCcccCCCCCCCCCCCCCCCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCeE
Q 038289 2 GITIQYCGCR-KLIGARFYSIPLTSNNHNTTRTTLAGSPRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSRI 80 (226)
Q Consensus 2 gi~~~~~~~~-k~~g~~~f~~~~~~~~~~~~~~~~~~~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~l 80 (226)
||+.+|++.. ++...+.|..+.. ..+...+.|..|||||||+||++ .+|+++|
T Consensus 10 Gi~~~h~~l~~~~~~~~~~~~~~~--------~~~~~~~~d~~gHGT~vAgiia~------------------~~p~~~i 63 (222)
T cd07492 10 GVDTDHPDLGNLALDGEVTIDLEI--------IVVSAEGGDKDGHGTACAGIIKK------------------YAPEAEI 63 (222)
T ss_pred CCCCCChhhhcccccccccccccc--------ccCCCCCCCCCCcHHHHHHHHHc------------------cCCCCeE
Confidence 8899999863 3344444433110 12234566889999999999984 4699999
Q ss_pred EEEeecCCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEecCCCCCCCCCCC
Q 038289 81 ASYKACSEDG-CSGSAILQAMDDAIADGVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGNDGPDPSTVV 159 (226)
Q Consensus 81 ~~~rv~~~~~-~~~~~~~~ai~~a~~~g~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~ 159 (226)
+.+|++...+ +..+.+++||+|+++++++|||||||..... ....+..+++++.++|+++|+||||++... .+|
T Consensus 64 ~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~----~~~~~~~~~~~a~~~g~l~V~aagN~~~~~-~~P 138 (222)
T cd07492 64 GSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR----DFPLLKELLEYAYKAGGIIVAAAPNNNDIG-TPP 138 (222)
T ss_pred EEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC----cCHHHHHHHHHHHHCCCEEEEECCCCCCCC-CCC
Confidence 9999998766 7889999999999999999999999986531 234556667888899999999999998753 347
Q ss_pred CCCCCeEEEeceecCCccccceeeCCCeeE--ecccccccCCCCCCeeeeEEcCCCCCCCCCc
Q 038289 160 NTAPWIFTVGASSIDRDFQSTVLLGNGKTI--KGSAISLSNLSSSMTYPIAFGKDIAAKFAPV 220 (226)
Q Consensus 160 ~~~p~vitVgA~~~~~~~~~~s~~G~~~~i--~g~~i~~~~~~~~~~~~~v~~~~~~~~~~~~ 220 (226)
+..++||+|++.+..+....+ +....+ ||+.+..... ...|..+.|||+++|..++
T Consensus 139 a~~~~vi~V~~~~~~~~~~~~---~~~~~~~apg~~i~~~~~--~~~~~~~~GTS~Aap~vaG 196 (222)
T cd07492 139 ASFPNVIGVKSDTADDPKSFW---YIYVEFSADGVDIIAPAP--HGRYLTVSGNSFAAPHVTG 196 (222)
T ss_pred ccCCceEEEEecCCCCCcccc---cCCceEEeCCCCeEeecC--CCCEEEeccHHHHHHHHHH
Confidence 888999999998876654433 344333 7877766554 4678999999999998776
No 29
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.94 E-value=1.4e-26 Score=202.29 Aligned_cols=194 Identities=23% Similarity=0.277 Sum_probs=132.1
Q ss_pred ccccccCCC-CceEEEEEcCCCcccCCCCCCCCCCCCCCCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCeE
Q 038289 2 GITIQYCGC-RKLIGARFYSIPLTSNNHNTTRTTLAGSPRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSRI 80 (226)
Q Consensus 2 gi~~~~~~~-~k~~g~~~f~~~~~~~~~~~~~~~~~~~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~l 80 (226)
||..+|++. ++.+..++|.++ ..+.|.++|||||||||+++..+.. ..||||+|+|
T Consensus 18 Gv~~~hp~l~~~~~~~~~~~~~--------------~~~~d~~gHGT~VAgiiag~~~~~~---------~~GvAp~a~i 74 (297)
T cd07480 18 GIDLTHPAFAGRDITTKSFVGG--------------EDVQDGHGHGTHCAGTIFGRDVPGP---------RYGVARGAEI 74 (297)
T ss_pred CCCCCChhhcCCcccCcccCCC--------------CCCCCCCCcHHHHHHHHhcccCCCc---------ccccCCCCEE
Confidence 788889986 333333333322 2256789999999999999865422 2499999999
Q ss_pred EEEeecCCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCC-------CCCCCccHHHHHHHHH---------------
Q 038289 81 ASYKACSEDG-CSGSAILQAMDDAIADGVDIISISIGMSSLF-------QSDYLNDPIAIGAFHA--------------- 137 (226)
Q Consensus 81 ~~~rv~~~~~-~~~~~~~~ai~~a~~~g~~VinlS~G~~~~~-------~~~~~~~~~~~~~~~a--------------- 137 (226)
+.+|++.... .....++++++|+++++++|||||||..... ........+....+.+
T Consensus 75 ~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (297)
T cd07480 75 ALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAA 154 (297)
T ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 9999987654 6677799999999999999999999985410 0111222333333333
Q ss_pred hcCCcEEEEecCCCCCCCCCCC-----CCC---CCeEEEeceecCCccccceeeC-CCeeE--ecccccccCCCCCCeee
Q 038289 138 EQMGVMVICSAGNDGPDPSTVV-----NTA---PWIFTVGASSIDRDFQSTVLLG-NGKTI--KGSAISLSNLSSSMTYP 206 (226)
Q Consensus 138 ~~~Gi~vV~AAGN~g~~~~~~~-----~~~---p~vitVgA~~~~~~~~~~s~~G-~~~~i--~g~~i~~~~~~~~~~~~ 206 (226)
..+|++||+||||++....... ... ..|++|++.+....+..+.++. ....+ ||+.|..... +..|.
T Consensus 155 ~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~~~~~~~~~~~~~~~~~~~~dv~ApG~~i~s~~~--~~~~~ 232 (297)
T cd07480 155 LARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVGALGRTGNFSAVANFSNGEVDIAAPGVDIVSAAP--GGGYR 232 (297)
T ss_pred hcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEECCCCCCCCccccCCCCCCceEEEeCCCCeEeecC--CCcEE
Confidence 7899999999999986533321 222 3455555555444444433333 23444 8888776654 67899
Q ss_pred eEEcCCCCCCCCCc
Q 038289 207 IAFGKDIAAKFAPV 220 (226)
Q Consensus 207 ~v~~~~~~~~~~~~ 220 (226)
.+.||||++|.+++
T Consensus 233 ~~sGTS~AaP~VaG 246 (297)
T cd07480 233 SMSGTSMATPHVAG 246 (297)
T ss_pred EeCcHHHHHHHHHH
Confidence 99999999998765
No 30
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.94 E-value=9.7e-27 Score=201.65 Aligned_cols=168 Identities=16% Similarity=0.108 Sum_probs=123.3
Q ss_pred CCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCeEEEEeecCCCCCCHHHHHHHHHHHHH----CCCcEEEEc
Q 038289 39 PRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSRIASYKACSEDGCSGSAILQAMDDAIA----DGVDIISIS 114 (226)
Q Consensus 39 ~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~l~~~rv~~~~~~~~~~~~~ai~~a~~----~g~~VinlS 114 (226)
+.|+++|||||||||+|.. ++.+ +.||||+++|+.+|++. .+.++++|+||++ .++.+||||
T Consensus 47 ~~d~~gHGT~VAGiIaa~~-n~~G--------~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~~v~~in~s 112 (277)
T cd04843 47 DQADSDHGTAVLGIIVAKD-NGIG--------VTGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPGDVILLEMQ 112 (277)
T ss_pred CCCCCCCcchhheeeeeec-CCCc--------eeeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCCCEEEEEcc
Confidence 5688999999999999974 2222 36999999999999986 2345666777766 356778999
Q ss_pred ccCCCCCCC---CCCccHHHHHHHHHhcCCcEEEEecCCCCCCCC--CC----------C-CCCCCeEEEeceecCC-c-
Q 038289 115 IGMSSLFQS---DYLNDPIAIGAFHAEQMGVMVICSAGNDGPDPS--TV----------V-NTAPWIFTVGASSIDR-D- 176 (226)
Q Consensus 115 ~G~~~~~~~---~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~--~~----------~-~~~p~vitVgA~~~~~-~- 176 (226)
||....... ....+.+..+++++.++|++||+||||++.+.. .+ + ...|++|+|||++.++ .
T Consensus 113 ~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~~~~~ 192 (277)
T cd04843 113 TGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSSTTGHT 192 (277)
T ss_pred ccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCCCCCc
Confidence 998642101 122345556778889999999999999987532 11 1 1236899999998764 3
Q ss_pred cccceeeCCCeeE--ecccccccCCCCC--------CeeeeEEcCCCCCCCCCc
Q 038289 177 FQSTVLLGNGKTI--KGSAISLSNLSSS--------MTYPIAFGKDIAAKFAPV 220 (226)
Q Consensus 177 ~~~~s~~G~~~~i--~g~~i~~~~~~~~--------~~~~~v~~~~~~~~~~~~ 220 (226)
++.||++|..+.+ ||+.|.+...... ..|..+.||||++|.+++
T Consensus 193 ~~~fSn~G~~vdi~APG~~i~s~~~~~~~~~~~~~~~~~~~~sGTS~AaP~VaG 246 (277)
T cd04843 193 RLAFSNYGSRVDVYGWGENVTTTGYGDLQDLGGENQDYTDSFSGTSSASPIVAG 246 (277)
T ss_pred cccccCCCCccceEcCCCCeEecCCCCcccccCCCCcceeeecccchhhHHHHH
Confidence 7899999998887 8888887664221 235778999999998876
No 31
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=99.93 E-value=1.4e-25 Score=191.03 Aligned_cols=175 Identities=24% Similarity=0.248 Sum_probs=137.0
Q ss_pred CCCCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCeEEEEeecCCCC--CCHHHHHHHHHHHHHCCCcEEEEc
Q 038289 37 GSPRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSRIASYKACSEDG--CSGSAILQAMDDAIADGVDIISIS 114 (226)
Q Consensus 37 ~~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~l~~~rv~~~~~--~~~~~~~~ai~~a~~~g~~VinlS 114 (226)
....|.++|||||||+|+++..+ ....|+||+|+|+.+|++.... .....+.++++++++.+++|||||
T Consensus 40 ~~~~~~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S 110 (267)
T cd04848 40 ASNGDGDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNS 110 (267)
T ss_pred CCCCCCCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEcc
Confidence 34567899999999999998654 2236999999999999998763 667888999999999999999999
Q ss_pred ccCCCCCCC---------CCCccHHHHHHHHHhcCCcEEEEecCCCCCCCCCC---------CCCCCCeEEEeceecCCc
Q 038289 115 IGMSSLFQS---------DYLNDPIAIGAFHAEQMGVMVICSAGNDGPDPSTV---------VNTAPWIFTVGASSIDRD 176 (226)
Q Consensus 115 ~G~~~~~~~---------~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~---------~~~~p~vitVgA~~~~~~ 176 (226)
||....... ......+....+++.++|++||+||||++...... +...+++|+||+++.++.
T Consensus 111 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~~ 190 (267)
T cd04848 111 WGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNGT 190 (267)
T ss_pred CCCCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCCC
Confidence 998763111 12445566677888999999999999998654332 234689999999999998
Q ss_pred cccc--eeeCCCe---eE--ecccccccCCCCCCeeeeEEcCCCCCCCCCc
Q 038289 177 FQST--VLLGNGK---TI--KGSAISLSNLSSSMTYPIAFGKDIAAKFAPV 220 (226)
Q Consensus 177 ~~~~--s~~G~~~---~i--~g~~i~~~~~~~~~~~~~v~~~~~~~~~~~~ 220 (226)
...+ ++++... .+ ||..++.........|..+.|||+++|.+++
T Consensus 191 ~~~~~~s~~~~~~~~~~~~apG~~i~~~~~~~~~~~~~~~GTS~Aap~vaG 241 (267)
T cd04848 191 IASYSYSNRCGVAANWCLAAPGENIYSTDPDGGNGYGRVSGTSFAAPHVSG 241 (267)
T ss_pred cccccccccchhhhhheeecCcCceeecccCCCCcccccceeEchHHHHHH
Confidence 8888 8877432 22 7777777665335688899999999998766
No 32
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=99.93 E-value=9e-26 Score=195.79 Aligned_cols=171 Identities=25% Similarity=0.243 Sum_probs=131.2
Q ss_pred CCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCeEEEEeecCCCC--CCHHHHHHHHHHHHHCCCcEEEEcccCC
Q 038289 41 DSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSRIASYKACSEDG--CSGSAILQAMDDAIADGVDIISISIGMS 118 (226)
Q Consensus 41 d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~l~~~rv~~~~~--~~~~~~~~ai~~a~~~g~~VinlS~G~~ 118 (226)
|..+|||||||||++..++.... ..+.||||+++|+.+|++...+ .....+.++++++.+.+++|||||||..
T Consensus 52 d~~~HGT~vAgiia~~~~~~~~~-----~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~ 126 (293)
T cd04842 52 DVDGHGTHVAGIIAGKGNDSSSI-----SLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSP 126 (293)
T ss_pred CCCCCcchhheeeccCCcCCCcc-----cccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCC
Confidence 78999999999999987654311 1237999999999999998764 5567788999999999999999999987
Q ss_pred CCCCCCCCccHHHHHHHHH-hc-CCcEEEEecCCCCCCCC---CCCCCCCCeEEEeceecCCc---------------cc
Q 038289 119 SLFQSDYLNDPIAIGAFHA-EQ-MGVMVICSAGNDGPDPS---TVVNTAPWIFTVGASSIDRD---------------FQ 178 (226)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~a-~~-~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~~~~---------------~~ 178 (226)
.. . .. ..+..++.++ .+ +|++||+||||++.+.. ..++..+++|+|||++..+. +.
T Consensus 127 ~~--~-~~-~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~~~~~~~~~~~~~~~ 202 (293)
T cd04842 127 VN--N-GY-TLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNGEGGLGQSDNSDTVA 202 (293)
T ss_pred Cc--c-cc-chHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccccccccccCCCCccc
Confidence 63 1 11 1222222322 23 89999999999998765 56678899999999998887 88
Q ss_pred cceeeCCCe--------eEecccccccCC-------CCCCeeeeEEcCCCCCCCCCc
Q 038289 179 STVLLGNGK--------TIKGSAISLSNL-------SSSMTYPIAFGKDIAAKFAPV 220 (226)
Q Consensus 179 ~~s~~G~~~--------~i~g~~i~~~~~-------~~~~~~~~v~~~~~~~~~~~~ 220 (226)
.|+++|... ..||..+..... .....|..+.|||+++|-++.
T Consensus 203 ~~S~~G~~~~~~~~pdv~ApG~~i~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG 259 (293)
T cd04842 203 SFSSRGPTYDGRIKPDLVAPGTGILSARSGGGGIGDTSDSAYTSKSGTSMATPLVAG 259 (293)
T ss_pred cccCcCCCCCCCcCCCEECCCCCeEeccCCCCCCCCCChhheeecCcHHHHHHHHHH
Confidence 899988642 337877776641 234578889999999997765
No 33
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=99.93 E-value=5.3e-25 Score=189.33 Aligned_cols=201 Identities=26% Similarity=0.348 Sum_probs=150.7
Q ss_pred ccccccCCCC--ceEE-----EEEcCCCcccCCCCCCCCCCCCCCCCCCCChHHHHHHhhccC-CCCCcccccCCCcccc
Q 038289 2 GITIQYCGCR--KLIG-----ARFYSIPLTSNNHNTTRTTLAGSPRDSVGHGTHTASTAAGAH-VANASYFGLARGTARG 73 (226)
Q Consensus 2 gi~~~~~~~~--k~~g-----~~~f~~~~~~~~~~~~~~~~~~~~~d~~gHGThvAgiiag~~-~~~~~~~g~~~~~~~G 73 (226)
||..+|++.. +++. .+.|.++. .......|+.+|||||++||++.. .+. ....|
T Consensus 8 Gid~~h~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~HGT~va~ii~~~~~~~~--------~~~~G 69 (282)
T PF00082_consen 8 GIDPNHPDFSSGNFIWSKVPGGYNFVDGN----------PNPSPSDDDNGHGTHVAGIIAGNGGNNG--------PGING 69 (282)
T ss_dssp BBTTTSTTTTCTTEEEEEEEEEEETTTTB----------STTTSSSTSSSHHHHHHHHHHHTTSSSS--------SSETC
T ss_pred CcCCCChhHccCCcccccccceeeccCCC----------CCcCccccCCCccchhhhhccccccccc--------ccccc
Confidence 8889999976 4443 56666554 122456688999999999999986 222 22369
Q ss_pred cCCCCeEEEEeecCCCCCCHHHHHHHHHHHH-HCCCcEEEEcccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEecCCCC
Q 038289 74 GSPSSRIASYKACSEDGCSGSAILQAMDDAI-ADGVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGNDG 152 (226)
Q Consensus 74 vAP~a~l~~~rv~~~~~~~~~~~~~ai~~a~-~~g~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g 152 (226)
+||+++|+.+|++...+.....++++|++++ +.+++|||||||...........+.+....+.+.++|+++|+|+||++
T Consensus 70 va~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~ 149 (282)
T PF00082_consen 70 VAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEEAIDYAEKKGILIVFAAGNNG 149 (282)
T ss_dssp SSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHHHHHHHHHTTEEEEEE--SSS
T ss_pred ccccccccccccccccccccccccchhhhhhhccCCccccccccccccccccccccccccccccccccCcceeecccccc
Confidence 9999999999998876677888999999999 899999999998832100223344556667788999999999999998
Q ss_pred CCCC---CCCCCCCCeEEEeceecCCccccceeeCCCe-------eE--ecccccccCCCCC-CeeeeEEcCCCCCCCCC
Q 038289 153 PDPS---TVVNTAPWIFTVGASSIDRDFQSTVLLGNGK-------TI--KGSAISLSNLSSS-MTYPIAFGKDIAAKFAP 219 (226)
Q Consensus 153 ~~~~---~~~~~~p~vitVgA~~~~~~~~~~s~~G~~~-------~i--~g~~i~~~~~~~~-~~~~~v~~~~~~~~~~~ 219 (226)
.... ..|+..+++|+||+++..+.+..|+++|... .+ +|..+........ ..|..+.|||+++|.++
T Consensus 150 ~~~~~~~~~Pa~~~~vi~Vg~~~~~~~~~~~s~~g~~~~~~~~~~di~a~G~~i~~~~~~~~~~~~~~~~GTS~Aap~va 229 (282)
T PF00082_consen 150 PNDDRNISFPASSPNVITVGAVDNNGQPASYSNYGGPSDDGRIKPDIAAPGGNILSAVPGSDRGSYTSFSGTSFAAPVVA 229 (282)
T ss_dssp SBTTBTGEBTTTSTTSEEEEEEETTSSBSTTSSBSTTETTCTTCEEEEEECSSEEEEETTTESEEEEEEESHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCcCCchHHHHH
Confidence 7654 3566779999999999999999999997654 44 7777644443222 45788999999988665
Q ss_pred c
Q 038289 220 V 220 (226)
Q Consensus 220 ~ 220 (226)
.
T Consensus 230 g 230 (282)
T PF00082_consen 230 G 230 (282)
T ss_dssp H
T ss_pred H
Confidence 4
No 34
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.92 E-value=3.5e-25 Score=193.74 Aligned_cols=159 Identities=23% Similarity=0.205 Sum_probs=115.4
Q ss_pred CCCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCeEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccC
Q 038289 38 SPRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSRIASYKACSEDGCSGSAILQAMDDAIADGVDIISISIGM 117 (226)
Q Consensus 38 ~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~l~~~rv~~~~~~~~~~~~~ai~~a~~~g~~VinlS~G~ 117 (226)
.+.|+.||||||++++. ||||+++|+.+|++.. ....++++|+||++++++|||||||.
T Consensus 56 ~~~D~~gHGT~vag~i~------------------GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dVIn~SlG~ 114 (298)
T cd07494 56 PACDENGHGTGESANLF------------------AIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDIISNSWGY 114 (298)
T ss_pred CCCCCCCcchheeecee------------------EeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCEEEeeccc
Confidence 45688999999998763 8999999999999975 45678999999999999999999998
Q ss_pred CCCCCC-------CCCccHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCCCeEEEeceec--CCcc--ccce-eeCC
Q 038289 118 SSLFQS-------DYLNDPIAIGAFHAEQMGVMVICSAGNDGPDPSTVVNTAPWIFTVGASSI--DRDF--QSTV-LLGN 185 (226)
Q Consensus 118 ~~~~~~-------~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~--~~~~--~~~s-~~G~ 185 (226)
...... .....++..+++++.++|++||+||||++. .+|+..|+||+|||++. ++.. ..++ .+.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~g~~~~~~~~~~~~s 191 (298)
T cd07494 115 DLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDEDGARRASSYASGFRS 191 (298)
T ss_pred CCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCCCcccccccccCccc
Confidence 643101 112345777888899999999999999874 56889999999999853 3322 1111 1111
Q ss_pred ----Ce------------------e---EecccccccC------CCCCCeeeeEEcCCCCCCCCCc
Q 038289 186 ----GK------------------T---IKGSAISLSN------LSSSMTYPIAFGKDIAAKFAPV 220 (226)
Q Consensus 186 ----~~------------------~---i~g~~i~~~~------~~~~~~~~~v~~~~~~~~~~~~ 220 (226)
+. . -||..|.... ......|..+.||||++|.++.
T Consensus 192 ~~~~g~~~pd~~~~~g~~~~~~~~~~~~APG~~i~~~~~~~~~~~~~~~~y~~~sGTS~Aap~vaG 257 (298)
T cd07494 192 KIYPGRQVPDVCGLVGMLPHAAYLMLPVPPGSQLDRSCAAFPDGTPPNDGWGVFSGTSAAAPQVAG 257 (298)
T ss_pred ccCCCCccCccccccCcCCcccccccccCCCcceeccccCCCCCCCCCCCeEeeccchHHHHHHHH
Confidence 11 0 1455543221 1234568889999999998765
No 35
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=99.92 E-value=5.9e-25 Score=191.26 Aligned_cols=199 Identities=17% Similarity=0.139 Sum_probs=134.6
Q ss_pred ccccccCCCCc-eE--EEEEcCCCcccCCCCCCCCCCCCCC--CCCCCChHHHHHHhhccCCCCCcccccCCCcccccCC
Q 038289 2 GITIQYCGCRK-LI--GARFYSIPLTSNNHNTTRTTLAGSP--RDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSP 76 (226)
Q Consensus 2 gi~~~~~~~~k-~~--g~~~f~~~~~~~~~~~~~~~~~~~~--~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP 76 (226)
||..+|+++.. +. ..++|..+... ..| .|.++|||||||||++...+..+ ..||||
T Consensus 49 Gv~~~h~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~gHGT~vAgiiag~~~~~~~--------~~GvAp 109 (297)
T cd04059 49 GLEITHPDLKDNYDPEASYDFNDNDPD-----------PTPRYDDDNSHGTRCAGEIAAVGNNGIC--------GVGVAP 109 (297)
T ss_pred CcccCCHhHhhcccccccccccCCCCC-----------CCCccccccccCcceeeEEEeecCCCcc--------cccccc
Confidence 78888888633 22 34444433211 122 37899999999999998654322 269999
Q ss_pred CCeEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCC-CCCCccHHHHHHHHHhc-----CCcEEEEecCC
Q 038289 77 SSRIASYKACSEDGCSGSAILQAMDDAIADGVDIISISIGMSSLFQ-SDYLNDPIAIGAFHAEQ-----MGVMVICSAGN 150 (226)
Q Consensus 77 ~a~l~~~rv~~~~~~~~~~~~~ai~~a~~~g~~VinlS~G~~~~~~-~~~~~~~~~~~~~~a~~-----~Gi~vV~AAGN 150 (226)
+|+|+.+|++... ........++.++.+ .++|||||||...... .......+..+++++.. +|++||+||||
T Consensus 110 ~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN 187 (297)
T cd04059 110 GAKLGGIRMLDGD-VTDVVEAESLGLNPD-YIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGN 187 (297)
T ss_pred cceEeEEEecCCc-cccHHHHHHHhcccC-CceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCC
Confidence 9999999999865 333445566665544 4699999999764310 01122233333344432 79999999999
Q ss_pred CCCCCC--CC--CCCCCCeEEEeceecCCccccceeeCCCeeE--eccc-------ccccCCCC-CCeeeeEEcCCCCCC
Q 038289 151 DGPDPS--TV--VNTAPWIFTVGASSIDRDFQSTVLLGNGKTI--KGSA-------ISLSNLSS-SMTYPIAFGKDIAAK 216 (226)
Q Consensus 151 ~g~~~~--~~--~~~~p~vitVgA~~~~~~~~~~s~~G~~~~i--~g~~-------i~~~~~~~-~~~~~~v~~~~~~~~ 216 (226)
++.... .+ +...+++|+|||++.++.++.|+++|..+.+ +|.. +....+.. ...|..+.|||+++|
T Consensus 188 ~g~~~~~~~~~~~~~~~~vi~Vga~~~~g~~~~~s~~g~~~~~~a~g~~~~~~~~~i~~~~~~~~~~~~~~~sGTS~AaP 267 (297)
T cd04059 188 GGNLGDNCNCDGYNNSIYTISVSAVTANGVRASYSEVGSSVLASAPSGGSGNPEASIVTTDLGGNCNCTSSHNGTSAAAP 267 (297)
T ss_pred CCCCCCCCCCCcccCCCceEEEEeeCCCCCCcCCCCCCCcEEEEecCCCCCCCCCceEeCCCCCCCCcccccCCcchhhh
Confidence 997322 22 2456899999999999999999999988777 4444 33333321 356778899999999
Q ss_pred CCCcc
Q 038289 217 FAPVS 221 (226)
Q Consensus 217 ~~~~~ 221 (226)
.+++.
T Consensus 268 ~VAG~ 272 (297)
T cd04059 268 LAAGV 272 (297)
T ss_pred hhHhH
Confidence 88763
No 36
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.91 E-value=1.7e-24 Score=184.73 Aligned_cols=161 Identities=22% Similarity=0.174 Sum_probs=115.0
Q ss_pred CCCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCeEEEEeecCCCCCCHHHHHHHHHHH--HHCCCcEEEEcc
Q 038289 38 SPRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSRIASYKACSEDGCSGSAILQAMDDA--IADGVDIISISI 115 (226)
Q Consensus 38 ~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~l~~~rv~~~~~~~~~~~~~ai~~a--~~~g~~VinlS~ 115 (226)
...|.++|||||||||+|+. +++|+++|+..++... ....+.++++|+ ...+++||||||
T Consensus 32 ~~~~~~~HGThVAgiiag~~---------------~~~p~a~~~~~~~~~~---~~~~~~~~i~~~~~~~~gv~VINmS~ 93 (247)
T cd07488 32 RNNTFDDHATLVASIMGGRD---------------GGLPAVNLYSSAFGIK---SNNGQWQECLEAQQNGNNVKIINHSY 93 (247)
T ss_pred CCCCCCCHHHHHHHHHHhcc---------------CCCCccceehhhhCCC---CCCccHHHHHHHHHhcCCceEEEeCC
Confidence 45689999999999999873 5679999987665332 122345677777 567999999999
Q ss_pred cCCCCCCC--C-CCccHHHHHHHHHhcC-CcEEEEecCCCCCCCC-----CCCCCCCCeEEEeceecCCccccc---eee
Q 038289 116 GMSSLFQS--D-YLNDPIAIGAFHAEQM-GVMVICSAGNDGPDPS-----TVVNTAPWIFTVGASSIDRDFQST---VLL 183 (226)
Q Consensus 116 G~~~~~~~--~-~~~~~~~~~~~~a~~~-Gi~vV~AAGN~g~~~~-----~~~~~~p~vitVgA~~~~~~~~~~---s~~ 183 (226)
|....... . .....+..+++++.++ |++||+||||+|.+.. ..++..+++|+|||++..+.++.+ +++
T Consensus 94 G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~~~~~s~~sn~ 173 (247)
T cd07488 94 GEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGDRFFASDVSNA 173 (247)
T ss_pred ccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCCcceecccccc
Confidence 98753110 0 1123455555666555 9999999999998532 234567899999999998876543 443
Q ss_pred C--------CCeeE--ecccccccCCCCCCeeeeEEcCCCCCCCCCc
Q 038289 184 G--------NGKTI--KGSAISLSNLSSSMTYPIAFGKDIAAKFAPV 220 (226)
Q Consensus 184 G--------~~~~i--~g~~i~~~~~~~~~~~~~v~~~~~~~~~~~~ 220 (226)
+ ....+ ||+.+.+ ....|..+.||||++|.+++
T Consensus 174 ~~~~~~~~~~~~di~APG~~i~s----~~~~~~~~sGTSmAaP~VaG 216 (247)
T cd07488 174 GSEINSYGRRKVLIVAPGSNYNL----PDGKDDFVSGTSFSAPLVTG 216 (247)
T ss_pred cCCCCCCCCceeEEEEeeeeEEC----CCCceeeecccchHHHHHHH
Confidence 2 22334 8888776 24568889999999998776
No 37
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.89 E-value=2.3e-22 Score=167.04 Aligned_cols=170 Identities=30% Similarity=0.400 Sum_probs=138.6
Q ss_pred CCCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCeEEEEeecCCCC-CCHHHHHHHHHHHH-HCCCcEEEEcc
Q 038289 38 SPRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSRIASYKACSEDG-CSGSAILQAMDDAI-ADGVDIISISI 115 (226)
Q Consensus 38 ~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~l~~~rv~~~~~-~~~~~~~~ai~~a~-~~g~~VinlS~ 115 (226)
...+..+|||||+++|++...+... .|+||+++|+.+|+..... .....+++++++++ ..+++||||||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~~~---------~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~ 109 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNGGG---------VGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSL 109 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCCCC---------EEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCC
Confidence 4567899999999999998654322 5999999999999998765 67889999999999 89999999999
Q ss_pred cCCCCCCCCCCccHHHHHHHHHhcC-CcEEEEecCCCCCCCC---CCCCCCCCeEEEeceecCCccc-cceeeCCCeeE-
Q 038289 116 GMSSLFQSDYLNDPIAIGAFHAEQM-GVMVICSAGNDGPDPS---TVVNTAPWIFTVGASSIDRDFQ-STVLLGNGKTI- 189 (226)
Q Consensus 116 G~~~~~~~~~~~~~~~~~~~~a~~~-Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~~~~~~-~~s~~G~~~~i- 189 (226)
|.... . ....+...+.++.++ |+++|+|+||.+.... ..++..+++|+||+++..+... .+++.+....+
T Consensus 110 g~~~~---~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~~~~~~~~~~~~~~~~~ 185 (241)
T cd00306 110 GGPGS---P-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDGTPASPSSNGGAGVDIA 185 (241)
T ss_pred CCCCC---C-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCCCccCCcCCCCCCceEE
Confidence 98763 1 234555666777777 9999999999998765 4677899999999999999887 78888877766
Q ss_pred -ecccccccCCCCCCeeeeEEcCCCCCCCCCc
Q 038289 190 -KGSAISLSNLSSSMTYPIAFGKDIAAKFAPV 220 (226)
Q Consensus 190 -~g~~i~~~~~~~~~~~~~v~~~~~~~~~~~~ 220 (226)
+|..+..........+....|||+++|.++.
T Consensus 186 apg~~~~~~~~~~~~~~~~~~GTS~Aap~vaG 217 (241)
T cd00306 186 APGGDILSSPTTGGGGYATLSGTSMAAPIVAG 217 (241)
T ss_pred eCcCCccCcccCCCCCeEeeccHHHHHHHHHH
Confidence 6666655323346789999999999987765
No 38
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=99.89 E-value=4.3e-23 Score=189.92 Aligned_cols=106 Identities=26% Similarity=0.318 Sum_probs=85.4
Q ss_pred CCCCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCeEEEEeecCCCC-----------CCHHHHHHHHHHHHH
Q 038289 37 GSPRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSRIASYKACSEDG-----------CSGSAILQAMDDAIA 105 (226)
Q Consensus 37 ~~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~l~~~rv~~~~~-----------~~~~~~~~ai~~a~~ 105 (226)
....|++||||||||||||+..+..+ +.||||+|+|+++|++...+ ....++++||+|+++
T Consensus 72 ~~~~D~~GHGThvAGIiag~~~~~~~--------~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~ 143 (455)
T cd07478 72 VPSRDENGHGTHVAGIAAGNGDNNPD--------FKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYD 143 (455)
T ss_pred CcCCCCCCchHHHHHHHhcCCCCCCC--------ccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHH
Confidence 34468899999999999999765333 36999999999999998764 467899999999986
Q ss_pred C-----CCcEEEEcccCCCCCCCCCCccHHHHHHHHHhcC-CcEEEEecCCCC
Q 038289 106 D-----GVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQM-GVMVICSAGNDG 152 (226)
Q Consensus 106 ~-----g~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~-Gi~vV~AAGN~g 152 (226)
. .+.|||||||.... .+.....++.+++.+..+ |++||+||||++
T Consensus 144 ~a~~~~~p~VInlSlG~~~g--~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg 194 (455)
T cd07478 144 KALELNKPLVINISLGTNFG--SHDGTSLLERYIDAISRLRGIAVVVGAGNEG 194 (455)
T ss_pred HHHHhCCCeEEEEccCcCCC--CCCCccHHHHHHHHHHhhCCeEEEEeCCCCC
Confidence 4 47799999998654 344556677777776665 999999999986
No 39
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2e-19 Score=170.86 Aligned_cols=170 Identities=28% Similarity=0.285 Sum_probs=130.4
Q ss_pred CCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCeEEEEeecCCCC---CCHHHHHHHHHHHHHCCCcEEEEcccC
Q 038289 41 DSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSRIASYKACSEDG---CSGSAILQAMDDAIADGVDIISISIGM 117 (226)
Q Consensus 41 d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~l~~~rv~~~~~---~~~~~~~~ai~~a~~~g~~VinlS~G~ 117 (226)
+..-||||||||++|+.... ....||||+|+|+.+++.+..- .+.-.+.+|+..++++++||||||+|-
T Consensus 308 ~Sg~HGTHVAgIa~anhpe~--------p~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE 379 (1304)
T KOG1114|consen 308 VSGPHGTHVAGIAAANHPET--------PELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGE 379 (1304)
T ss_pred cCCCCcceehhhhccCCCCC--------ccccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCc
Confidence 34569999999999987533 2346999999999999988652 456678999999999999999999997
Q ss_pred CCCCCCCCCccHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCC---CCCCeEEEeceecCC--------------ccccc
Q 038289 118 SSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGNDGPDPSTVVN---TAPWIFTVGASSIDR--------------DFQST 180 (226)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~---~~p~vitVgA~~~~~--------------~~~~~ 180 (226)
... -+...+.++...+.+.++|+++|++|||.||.-++..+ ....+|.|||--..+ ..-.+
T Consensus 380 ~a~--~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a~y~~~e~vp~~~YtW 457 (1304)
T KOG1114|consen 380 DAH--LPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQAEYSVREPVPSNPYTW 457 (1304)
T ss_pred cCC--CCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHhhhhhhccCCCCcccc
Confidence 755 45566777777777789999999999999998777764 456999999975432 12233
Q ss_pred eeeC------CCeeE--ecccccccCCCCCCeeeeEEcCCCCCCCCCc
Q 038289 181 VLLG------NGKTI--KGSAISLSNLSSSMTYPIAFGKDIAAKFAPV 220 (226)
Q Consensus 181 s~~G------~~~~i--~g~~i~~~~~~~~~~~~~v~~~~~~~~~~~~ 220 (226)
++.| .|+.| ||..|.+-....-....++.||||++|++.+
T Consensus 458 sSRgP~~DG~lGVsi~APggAiAsVP~~tlq~~qLMNGTSMsSP~acG 505 (1304)
T KOG1114|consen 458 SSRGPCLDGDLGVSISAPGGAIASVPQYTLQNSQLMNGTSMSSPSACG 505 (1304)
T ss_pred ccCCCCcCCCcceEEecCCccccCCchhhhhhhhhhCCcccCCccccc
Confidence 4444 24555 7776666554455678899999999999876
No 40
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=9e-20 Score=167.30 Aligned_cols=186 Identities=22% Similarity=0.297 Sum_probs=144.1
Q ss_pred ccccccCCCCceEEEEEcCCCcccCCCCCCCCCCCCCCCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCeEE
Q 038289 2 GITIQYCGCRKLIGARFYSIPLTSNNHNTTRTTLAGSPRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSRIA 81 (226)
Q Consensus 2 gi~~~~~~~~k~~g~~~f~~~~~~~~~~~~~~~~~~~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~l~ 81 (226)
|++.+|+-.+++.-.-+|++.. .-.|..||||+|||+||+.. .+.|.||+++|+
T Consensus 211 Gl~~~HPHFrnvKERTNWTNE~--------------tLdD~lgHGTFVAGvia~~~------------ec~gfa~d~e~~ 264 (1033)
T KOG4266|consen 211 GLRADHPHFRNVKERTNWTNED--------------TLDDNLGHGTFVAGVIAGRN------------ECLGFASDTEIY 264 (1033)
T ss_pred ccccCCccccchhhhcCCcCcc--------------ccccCcccceeEeeeeccch------------hhcccCCcccee
Confidence 7888899888887777776663 34477999999999999763 357999999999
Q ss_pred EEeecCCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCC
Q 038289 82 SYKACSEDG-CSGSAILQAMDDAIADGVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGNDGPDPSTVVN 160 (226)
Q Consensus 82 ~~rv~~~~~-~~~~~~~~ai~~a~~~g~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~ 160 (226)
++|||.+.. ...+++++|++||+..+.||+|||+|++... ..++-+-+.+..+.+|++|.|+||+|+-..+..+
T Consensus 265 ~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGPDfm-----D~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNN 339 (1033)
T KOG4266|consen 265 AFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGPDFM-----DLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNN 339 (1033)
T ss_pred EEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCcccc-----cchHHHHHHhhccCcEEEEEecCCCCcceeecCC
Confidence 999999876 8899999999999999999999999997643 3344334467788999999999999998776654
Q ss_pred --CCCCeEEEeceecCCccccceeeCCC-eeE-------------ecccccccCCCCCCeeeeEEcCCCCCCCCCc
Q 038289 161 --TAPWIFTVGASSIDRDFQSTVLLGNG-KTI-------------KGSAISLSNLSSSMTYPIAFGKDIAAKFAPV 220 (226)
Q Consensus 161 --~~p~vitVgA~~~~~~~~~~s~~G~~-~~i-------------~g~~i~~~~~~~~~~~~~v~~~~~~~~~~~~ 220 (226)
.-..||.||.++-++.++.||+.|-. ..+ -|..+..... ...-.-+.|||.+.|..++
T Consensus 340 PaDQsDViGVGGIdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v--~~GCr~LSGTSVaSPVVAG 413 (1033)
T KOG4266|consen 340 PADQSDVIGVGGIDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKV--STGCRSLSGTSVASPVVAG 413 (1033)
T ss_pred cccccceeeeccccccchhhhhccCCcceeecCCcccccCCceEeeccccccCcc--cccchhccCCcccchhhhc
Confidence 45789999999999999999987722 112 3444444333 2234456777777766554
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=6.8e-16 Score=140.55 Aligned_cols=198 Identities=25% Similarity=0.286 Sum_probs=141.6
Q ss_pred ccccccCCC-CceEEEEEcCCCcccCCCCCCCCCCCCCCCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCeE
Q 038289 2 GITIQYCGC-RKLIGARFYSIPLTSNNHNTTRTTLAGSPRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSRI 80 (226)
Q Consensus 2 gi~~~~~~~-~k~~g~~~f~~~~~~~~~~~~~~~~~~~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~l 80 (226)
||.++|++. .+....++|.++... ....|..+|||||++++++..... ...+.|++|++++
T Consensus 152 gv~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~d~~~hGt~vag~ia~~~~~~-------~~~~~g~a~~~~~ 213 (508)
T COG1404 152 GVDASHPDLAGSAVAGGDFVDGDPE-----------PPFLDDNGHGTHVAGTIAAVIFDN-------GAGVAGVAPGAKL 213 (508)
T ss_pred CCCCCChhhhcccccccccccCCCC-----------CCCCCCCCCcceeeeeeeeecccC-------CCccccccCCCcE
Confidence 566777764 222222455444321 135789999999999999853111 1123699999999
Q ss_pred EEEeecCCC-C-CCHHHHHHHHHHHHHCC--CcEEEEcccCCCCCCCCCCccHHHHHHHHHhcCC-cEEEEecCCCCCCC
Q 038289 81 ASYKACSED-G-CSGSAILQAMDDAIADG--VDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMG-VMVICSAGNDGPDP 155 (226)
Q Consensus 81 ~~~rv~~~~-~-~~~~~~~~ai~~a~~~g--~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~G-i~vV~AAGN~g~~~ 155 (226)
+.++++... + ....++++++.++++.+ +++||||+|.. . .......+..++..+...| +++|+++||.+.+.
T Consensus 214 ~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~-~--~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~ 290 (508)
T COG1404 214 LLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGS-L--SDSASPALGDALAAAANAGGVVIVAAAGNDGSNA 290 (508)
T ss_pred EEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCC-c--cccccHHHHHHHHHHHHcCCEEEEEecccCCCCC
Confidence 999999965 4 67778899999999999 99999999986 1 2233455666667777777 99999999999775
Q ss_pred C----CCCCCC--CCeEEEeceecCCccccceeeCCC--eeE--eccccccc---CCCCCCe--eeeEEcCCCCCCCCCc
Q 038289 156 S----TVVNTA--PWIFTVGASSIDRDFQSTVLLGNG--KTI--KGSAISLS---NLSSSMT--YPIAFGKDIAAKFAPV 220 (226)
Q Consensus 156 ~----~~~~~~--p~vitVgA~~~~~~~~~~s~~G~~--~~i--~g~~i~~~---~~~~~~~--~~~v~~~~~~~~~~~~ 220 (226)
. .++... +.+++|++++..+....|++.|.. ..+ ||..+... ....... |....|++++++..+.
T Consensus 291 ~~~~~~~p~~~~~~~~i~v~a~~~~~~~~~~s~~g~~~~~~~~apg~~i~~~~~~~~~~~~~~~~~~~~Gts~a~p~v~g 370 (508)
T COG1404 291 SGGDLAYPASYPAPNVIAVGALDLSDTVASFSNDGSPTGVDIAAPGVNILSLSAVNTLPGDGADYVTLSGTSMAAPHVSG 370 (508)
T ss_pred ccccccCCcccCCCceEEEecCCCCCccccccccCCCCCcceeCCCccccccccceeeeCCccceEeeccccccccHHHH
Confidence 2 334433 499999999998999999999963 444 66665541 1223334 8999999999887655
No 42
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.43 E-value=5.1e-13 Score=119.94 Aligned_cols=106 Identities=21% Similarity=0.236 Sum_probs=83.6
Q ss_pred cccccCCCCeEEEEeecCCCCCCHHHHHHHHHHHHHC---CCcEEEEcccCCCCCCCCCCccHHHHHHHHHhcCCcEEEE
Q 038289 70 TARGGSPSSRIASYKACSEDGCSGSAILQAMDDAIAD---GVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVIC 146 (226)
Q Consensus 70 ~~~GvAP~a~l~~~rv~~~~~~~~~~~~~ai~~a~~~---g~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~ 146 (226)
.+.||||+++|+.+++.... ...++.++.+++.+ +++|||+|||.........+.+.+..+++++.++||+||+
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitvva 158 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLA 158 (361)
T ss_pred HHHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 35799999999999998753 34567888888887 9999999999876311122345667777889999999999
Q ss_pred ecCCCCCCCC-----------CCCCCCCCeEEEeceecCCccc
Q 038289 147 SAGNDGPDPS-----------TVVNTAPWIFTVGASSIDRDFQ 178 (226)
Q Consensus 147 AAGN~g~~~~-----------~~~~~~p~vitVgA~~~~~~~~ 178 (226)
|+||+|.... .+|+..|+|++||+++......
T Consensus 159 AsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~~~ 201 (361)
T cd04056 159 ASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTGGT 201 (361)
T ss_pred eCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCCCc
Confidence 9999997643 3567899999999998776544
No 43
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2.2e-08 Score=88.64 Aligned_cols=194 Identities=17% Similarity=0.169 Sum_probs=116.1
Q ss_pred ccccccCCC---CceEEEEEcCCCcccCCCCCCCCCCCCCC--CCC--CCChHHHHHHhhccCCCCCcccccCCCccccc
Q 038289 2 GITIQYCGC---RKLIGARFYSIPLTSNNHNTTRTTLAGSP--RDS--VGHGTHTASTAAGAHVANASYFGLARGTARGG 74 (226)
Q Consensus 2 gi~~~~~~~---~k~~g~~~f~~~~~~~~~~~~~~~~~~~~--~d~--~gHGThvAgiiag~~~~~~~~~g~~~~~~~Gv 74 (226)
||.+-||+. -..-..++|..+++ ++.| .|+ +.|||.|||-+++..+|+. .|+ ||
T Consensus 171 gvdymhpdlk~nynaeasydfssndp-----------fpyprytddwfnshgtrcagev~aardngi--cgv------gv 231 (629)
T KOG3526|consen 171 GVDYMHPDLKSNYNAEASYDFSSNDP-----------FPYPRYTDDWFNSHGTRCAGEVVAARDNGI--CGV------GV 231 (629)
T ss_pred CchhcCcchhcccCceeecccccCCC-----------CCCCcccchhhhccCccccceeeeeccCCc--eee------ee
Confidence 677788884 12334445544332 2333 343 8999999999988877654 333 99
Q ss_pred CCCCeEEEEeecCCCCCCHHHHHHHHHHHH-HCCCcEEEEcccCCCCCCCCCCccHHHHHHHHHh---------cCCcEE
Q 038289 75 SPSSRIASYKACSEDGCSGSAILQAMDDAI-ADGVDIISISIGMSSLFQSDYLNDPIAIGAFHAE---------QMGVMV 144 (226)
Q Consensus 75 AP~a~l~~~rv~~~~~~~~~~~~~ai~~a~-~~g~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~---------~~Gi~v 144 (226)
|.+.++..+|+++. ...-++++|-...- -...+|.+-|||.... ....+--..+..+|+ -+|-++
T Consensus 232 aydskvagirmldq--pymtdlieansmghep~kihiysaswgptdd---gktvdgprnatmraiv~gvnegrnglgsiy 306 (629)
T KOG3526|consen 232 AYDSKVAGIRMLDQ--PYMTDLIEANSMGHEPSKIHIYSASWGPTDD---GKTVDGPRNATMRAIVRGVNEGRNGLGSIY 306 (629)
T ss_pred eeccccceeeecCC--chhhhhhhhcccCCCCceEEEEecccCcCCC---CcccCCchhHHHHHHHHhhhcccCCcccEE
Confidence 99999999999985 55666776644332 2468899999998653 111121122223332 256799
Q ss_pred EEecCCCCCCC-CCCC--CCCCCeEEEeceecCCccccc---------eeeCCCeeEecccccccCCCCCCeeeeEEcCC
Q 038289 145 ICSAGNDGPDP-STVV--NTAPWIFTVGASSIDRDFQST---------VLLGNGKTIKGSAISLSNLSSSMTYPIAFGKD 212 (226)
Q Consensus 145 V~AAGN~g~~~-~~~~--~~~p~vitVgA~~~~~~~~~~---------s~~G~~~~i~g~~i~~~~~~~~~~~~~v~~~~ 212 (226)
|.|+|..|.+. +..- +.+-|.|++-+.-.+++-+-| |.+.++..-|..++-...+.. .-...-.|+|
T Consensus 307 vwasgdgge~ddcncdgyaasmwtisinsaindg~nahydescsstlastfsng~rnpetgvattdlyg-~ct~~hsgts 385 (629)
T KOG3526|consen 307 VWASGDGGEDDDCNCDGYAASMWTISINSAINDGENAHYDESCSSTLASTFSNGGRNPETGVATTDLYG-RCTRSHSGTS 385 (629)
T ss_pred EEecCCCCCccccCCccchhheEEEEeehhhcCCccccccchhhHHHHHHhhcCCcCCCcceeeecccc-ceecccCCcc
Confidence 99999988642 3332 356788998766555543222 223334333444444444432 2233346788
Q ss_pred CCCCCCCc
Q 038289 213 IAAKFAPV 220 (226)
Q Consensus 213 ~~~~~~~~ 220 (226)
.++|-+++
T Consensus 386 aaapeaag 393 (629)
T KOG3526|consen 386 AAAPEAAG 393 (629)
T ss_pred ccCccccc
Confidence 88887765
No 44
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.037 Score=56.14 Aligned_cols=95 Identities=18% Similarity=0.224 Sum_probs=59.2
Q ss_pred cccCCCCeEEEEeecCCCCCCHHHHHHHHHHHHH--CCCcEEEEcccCCCCCCCC--CCccHHHHHHHHHhcCCcEEEEe
Q 038289 72 RGGSPSSRIASYKACSEDGCSGSAILQAMDDAIA--DGVDIISISIGMSSLFQSD--YLNDPIAIGAFHAEQMGVMVICS 147 (226)
Q Consensus 72 ~GvAP~a~l~~~rv~~~~~~~~~~~~~ai~~a~~--~g~~VinlS~G~~~~~~~~--~~~~~~~~~~~~a~~~Gi~vV~A 147 (226)
.-+||+|+|..+-+... ....+..|+++-.. .. -++-+||+........ ...+.+....+++.++||.+++|
T Consensus 289 ~A~AP~A~I~lvvap~~---~~~a~dna~n~~~~~~~s-~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~AA 364 (1174)
T COG4934 289 HAMAPKANIDLVVAPNP---LVSALDNAYNEVLYYMVS-FVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFAA 364 (1174)
T ss_pred hccCccCceEEEEcCCC---ceehhhHHHHHHHHhhhc-ccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEEe
Confidence 47899999999887332 22222222222211 11 3333566653221112 23455666778889999999999
Q ss_pred cCCCCCCCC--------CCCCCCCCeEEEec
Q 038289 148 AGNDGPDPS--------TVVNTAPWIFTVGA 170 (226)
Q Consensus 148 AGN~g~~~~--------~~~~~~p~vitVgA 170 (226)
+|.+|.... .+|+.+|+|.+||.
T Consensus 365 SGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 365 SGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred cccccccCCCcccceeecccCCCccEEeecC
Confidence 999986543 35568899999998
No 45
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=90.53 E-value=0.28 Score=45.34 Aligned_cols=133 Identities=13% Similarity=0.093 Sum_probs=78.4
Q ss_pred CCCCCCCChHHHHHHhhccCCCCCcccccCCCcccccCCCCeEEEEeecCCCCCCHHHHHHHHHHHH-HCCCcEEEEccc
Q 038289 38 SPRDSVGHGTHTASTAAGAHVANASYFGLARGTARGGSPSSRIASYKACSEDGCSGSAILQAMDDAI-ADGVDIISISIG 116 (226)
Q Consensus 38 ~~~d~~gHGThvAgiiag~~~~~~~~~g~~~~~~~GvAP~a~l~~~rv~~~~~~~~~~~~~ai~~a~-~~g~~VinlS~G 116 (226)
+......|||-|++-+++..++. ....|+++++++..+|++...-. +...+-.... ..-+++-+.||+
T Consensus 75 ~~~~~~~~g~~Ca~~~a~~~~~~--------~C~vg~~~~~~~~g~~~l~~~v~---~~~~~~~~~~~~~~~di~scsw~ 143 (431)
T KOG3525|consen 75 DGTNENKHGTRCAGCVAARANNL--------TCGVGVAYNATIGGIRMLAGCVS---DAVEAPSLGFGPCHIDIYSCSWG 143 (431)
T ss_pred CCCCccccCCCCCcccccccCCC--------cCCCCcccCccccceeeeeeecc---cceecccccCCCCCceeecCcCC
Confidence 33346899999999999886322 22359999999999998874211 1111111111 235788999999
Q ss_pred CCCCCCCC-----CCccHHHH-HHHHHhcCCcEEEEecCCCCCCCCCCCC----CCCCeEEEeceecCCccccce
Q 038289 117 MSSLFQSD-----YLNDPIAI-GAFHAEQMGVMVICSAGNDGPDPSTVVN----TAPWIFTVGASSIDRDFQSTV 181 (226)
Q Consensus 117 ~~~~~~~~-----~~~~~~~~-~~~~a~~~Gi~vV~AAGN~g~~~~~~~~----~~p~vitVgA~~~~~~~~~~s 181 (226)
........ ....++.. .......+|-+.|+|.||-+........ ...+.++.+..+..+.++.|+
T Consensus 144 pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d~c~c~~y~~~i~t~~~~~~~~~~~~p~y~ 218 (431)
T KOG3525|consen 144 PDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGDSCHCDGYTNSIYTLSISCATQCGKKPQYR 218 (431)
T ss_pred cccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccccccccccccCcceecccccccccCCCcccc
Confidence 87532111 11111111 1122346888999999999876554442 345556666666666554443
No 46
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=56.70 E-value=79 Score=23.41 Aligned_cols=65 Identities=22% Similarity=0.416 Sum_probs=42.7
Q ss_pred CCCeEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCC---CCCCCccHHHHHHHHHhcC-CcEEEE
Q 038289 76 PSSRIASYKACSEDGCSGSAILQAMDDAIADGVDIISISIGMSSLF---QSDYLNDPIAIGAFHAEQM-GVMVIC 146 (226)
Q Consensus 76 P~a~l~~~rv~~~~~~~~~~~~~ai~~a~~~g~~VinlS~G~~~~~---~~~~~~~~~~~~~~~a~~~-Gi~vV~ 146 (226)
++++|+.+--+. ++....++.-+++..+.++++|-+|-...... ..+.. +.+ .....++ |+-||-
T Consensus 36 ~~~elvgf~~Cg--GCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~-~~~---~~~I~~~~gi~VV~ 104 (107)
T PF08821_consen 36 EDVELVGFFTCG--GCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHI-DEI---KKIIEEKFGIEVVE 104 (107)
T ss_pred CCeEEEEEeeCC--CCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCH-HHH---HHHHHHHhCCCEee
Confidence 467888765554 57788888888899999999999987765421 12332 222 2333344 887774
No 47
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=51.29 E-value=78 Score=27.69 Aligned_cols=76 Identities=25% Similarity=0.247 Sum_probs=52.5
Q ss_pred CCCCeEEEEeecCCCCCCHHHHHHHHHHHHHCC----CcEEEEcccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEecCC
Q 038289 75 SPSSRIASYKACSEDGCSGSAILQAMDDAIADG----VDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGN 150 (226)
Q Consensus 75 AP~a~l~~~rv~~~~~~~~~~~~~ai~~a~~~g----~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN 150 (226)
.|.+++..|.+.--+......+++||+.+-..+ +|+|-+-=|++...+--.+.+ ...+....+.-+.||.+-|-
T Consensus 39 ~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~--e~varai~~~~~PvisaIGH 116 (319)
T PF02601_consen 39 NPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFND--EEVARAIAASPIPVISAIGH 116 (319)
T ss_pred CCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccCh--HHHHHHHHhCCCCEEEecCC
Confidence 477778777776533367888999999998765 999999999876311111111 12334445678999999998
Q ss_pred CC
Q 038289 151 DG 152 (226)
Q Consensus 151 ~g 152 (226)
+-
T Consensus 117 e~ 118 (319)
T PF02601_consen 117 ET 118 (319)
T ss_pred CC
Confidence 84
No 48
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=43.97 E-value=37 Score=30.99 Aligned_cols=68 Identities=19% Similarity=0.290 Sum_probs=44.6
Q ss_pred cccCCCCeEEEEeecCCCC---CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEec
Q 038289 72 RGGSPSSRIASYKACSEDG---CSGSAILQAMDDAIADGVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSA 148 (226)
Q Consensus 72 ~GvAP~a~l~~~rv~~~~~---~~~~~~~~ai~~a~~~g~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AA 148 (226)
.=||..++|+. ++.+ -..+.+++| |+++|++-|.+| + . .++.+.....-.++|.++|+.||.|-
T Consensus 78 ~emak~~~viv----N~vGPyR~hGE~VVka---cienG~~~vDIS--G-E---P~f~E~mq~kYhd~A~ekGVYIVsaC 144 (423)
T KOG2733|consen 78 DEMAKQARVIV----NCVGPYRFHGEPVVKA---CIENGTHHVDIS--G-E---PQFMERMQLKYHDLAKEKGVYIVSAC 144 (423)
T ss_pred HHHHhhhEEEE----eccccceecCcHHHHH---HHHcCCceeccC--C-C---HHHHHHHHHHHHHHHHhcCeEEEeec
Confidence 34666666665 2212 122344444 888999887765 1 1 35666666666788999999999999
Q ss_pred CCCC
Q 038289 149 GNDG 152 (226)
Q Consensus 149 GN~g 152 (226)
|=+.
T Consensus 145 GfDS 148 (423)
T KOG2733|consen 145 GFDS 148 (423)
T ss_pred ccCC
Confidence 9764
No 49
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=40.54 E-value=98 Score=28.86 Aligned_cols=78 Identities=22% Similarity=0.276 Sum_probs=55.6
Q ss_pred cCCCCeEEEEeecCCCCCCHHHHHHHHHHHHHCC-CcEEEEcccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEecCCCC
Q 038289 74 GSPSSRIASYKACSEDGCSGSAILQAMDDAIADG-VDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGNDG 152 (226)
Q Consensus 74 vAP~a~l~~~rv~~~~~~~~~~~~~ai~~a~~~g-~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g 152 (226)
-.|.++++.+.+.--+......+++||+.+=+.+ +|+|=+.=|+..- .+.|.---+..+....+.-+.||.|-|-+-
T Consensus 159 R~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSi--EDLW~FNdE~vaRAi~~s~iPvISAVGHEt 236 (440)
T COG1570 159 RFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSI--EDLWAFNDEIVARAIAASRIPVISAVGHET 236 (440)
T ss_pred hCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchH--HHHhccChHHHHHHHHhCCCCeEeecccCC
Confidence 3588999999887654477888999999997766 9999999888753 111111112234455577899999999885
Q ss_pred C
Q 038289 153 P 153 (226)
Q Consensus 153 ~ 153 (226)
.
T Consensus 237 D 237 (440)
T COG1570 237 D 237 (440)
T ss_pred C
Confidence 3
No 50
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=31.70 E-value=1.3e+02 Score=27.65 Aligned_cols=77 Identities=22% Similarity=0.250 Sum_probs=52.6
Q ss_pred CCCCeEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEecCCCCC
Q 038289 75 SPSSRIASYKACSEDGCSGSAILQAMDDAIADGVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGNDGP 153 (226)
Q Consensus 75 AP~a~l~~~rv~~~~~~~~~~~~~ai~~a~~~g~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~ 153 (226)
.|.+++..+.+.--+......+++||+.+-..+.|||-+-=|+....+--.+.+ ...+....+.-+.||.+-|-+-.
T Consensus 160 ~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~--e~v~~ai~~~~~Pvis~IGHE~D 236 (438)
T PRK00286 160 FPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSLEDLWAFND--EAVARAIAASRIPVISAVGHETD 236 (438)
T ss_pred CCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCc--HHHHHHHHcCCCCEEEeccCCCC
Confidence 377888887776543366788999999987666899999999876311111121 12234445678999999999853
No 51
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=30.90 E-value=83 Score=27.88 Aligned_cols=58 Identities=16% Similarity=0.187 Sum_probs=36.5
Q ss_pred eEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEE-cccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEec
Q 038289 79 RIASYKACSEDGCSGSAILQAMDDAIADGVDIISI-SIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSA 148 (226)
Q Consensus 79 ~l~~~rv~~~~~~~~~~~~~ai~~a~~~g~~Vinl-S~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AA 148 (226)
++..+++... .. ..+ |+.+++.+++-|-+ .+|.... .. .+..+++++.++||.||..+
T Consensus 211 ~V~il~~~pG--~~-~~~---l~~~~~~g~~GiVl~~~G~Gn~--p~----~~~~~l~~a~~~gi~VV~~S 269 (323)
T cd00411 211 KVGILYLYPG--IS-AEA---VRAFLRAGYKGIVLAGYGAGNV--PT----DLIDELEEAAERGVVVVNST 269 (323)
T ss_pred CEEEEEECCC--CC-HHH---HHHHHhCCCCEEEEEeECCCCC--CH----HHHHHHHHHHHCCCEEEEec
Confidence 4666666552 22 233 34456777766555 8887764 22 45555688899999999874
No 52
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=30.58 E-value=1.8e+02 Score=26.99 Aligned_cols=77 Identities=18% Similarity=0.203 Sum_probs=51.3
Q ss_pred CCCCeEEEEeecCCCCCCHHHHHHHHHHHHHCC-CcEEEEcccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEecCCCCC
Q 038289 75 SPSSRIASYKACSEDGCSGSAILQAMDDAIADG-VDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGNDGP 153 (226)
Q Consensus 75 AP~a~l~~~rv~~~~~~~~~~~~~ai~~a~~~g-~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~ 153 (226)
.|.+++..+.+.--+......+++||+.+-..+ +|+|-+-=|+....+--.+.+ ...+....+--+.||.+-|-+-.
T Consensus 154 ~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn~--e~~~rai~~~~~Pvis~iGHe~D 231 (432)
T TIGR00237 154 DPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSFND--EKVARAIFLSKIPIISAVGHETD 231 (432)
T ss_pred CCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcCc--HHHHHHHHcCCCCEEEecCcCCC
Confidence 377788877766543366788999999886644 899999999876311111111 12234445778999999998853
No 53
>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]
Probab=29.90 E-value=71 Score=27.71 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=24.0
Q ss_pred CCcEEEEcccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEecCCC
Q 038289 107 GVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGND 151 (226)
Q Consensus 107 g~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~ 151 (226)
..+||.+|+-.... ......+.+++..+.++| ++|+|+|+-
T Consensus 132 dipVV~iSi~~~~~---~~~h~~lG~al~~lree~-vlilaSGs~ 172 (268)
T COG3384 132 DIPVVQISIDCTLS---PADHYELGRALRKLREEG-VLILASGSL 172 (268)
T ss_pred CCcEEEEecCCCCC---HHHHHHHHHHHHHHHhCC-EEEEecCcc
Confidence 46777777766542 223344555667777777 455556653
No 54
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=29.79 E-value=86 Score=28.24 Aligned_cols=59 Identities=20% Similarity=0.240 Sum_probs=36.2
Q ss_pred eEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEE-cccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEecC
Q 038289 79 RIASYKACSEDGCSGSAILQAMDDAIADGVDIISI-SIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAG 149 (226)
Q Consensus 79 ~l~~~rv~~~~~~~~~~~~~ai~~a~~~g~~Vinl-S~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAG 149 (226)
++..++.... . ...++ +.+++.|++-|-+ ++|.... .+ .+..++.++.++||.||.++=
T Consensus 240 ~V~il~~~pG--~-~~~ll---~~~~~~g~~GlVl~g~G~Gn~--p~----~~~~al~~a~~~GipVV~~Sr 299 (349)
T TIGR00520 240 KVDIIYAYQN--A-PPLIV---NAVLDAGAKGIVLAGVGNGSL--SA----AGLKVNETAAKLGVPIVRSSR 299 (349)
T ss_pred cEEEEEECCC--C-CHHHH---HHHHhCCCCEEEEEeECCCCC--CH----HHHHHHHHHHHCCCEEEEEcc
Confidence 4555555542 2 23333 4456677666555 8887664 22 355556889999999998754
No 55
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=28.92 E-value=4.3e+02 Score=24.68 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=43.4
Q ss_pred CCeEEEEeecCCCC--CCHHHHHHHHHHHHHCCCcE-----EE--EcccCCCCCCCCCCccHHHHHHHHHhcCCcEEEE
Q 038289 77 SSRIASYKACSEDG--CSGSAILQAMDDAIADGVDI-----IS--ISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVIC 146 (226)
Q Consensus 77 ~a~l~~~rv~~~~~--~~~~~~~~ai~~a~~~g~~V-----in--lS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~ 146 (226)
+++|+++-.....+ .+.+.+-+|++.|.+.+.+| +| +++|... ..+.+...+..+..|++.||.
T Consensus 192 gveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~------~~e~L~~ll~Fa~~kniHvI~ 264 (471)
T KOG0256|consen 192 GVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTL------SPEELISLLNFASRKNIHVIS 264 (471)
T ss_pred CceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCcc------CHHHHHHHHHHHhhcceEEEe
Confidence 46788887777666 66778888888888875444 33 2555544 224455556788899999886
No 56
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=28.48 E-value=1.1e+02 Score=27.40 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=35.5
Q ss_pred eEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEE-cccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEec
Q 038289 79 RIASYKACSEDGCSGSAILQAMDDAIADGVDIISI-SIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSA 148 (226)
Q Consensus 79 ~l~~~rv~~~~~~~~~~~~~ai~~a~~~g~~Vinl-S~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AA 148 (226)
++..+++... .. ..+ |+.+++.+++-|-+ .+|....+ ....+..+++++.++||.||.++
T Consensus 211 ~V~ii~~~pG--~~-~~~---l~~~~~~~~~GiVl~~~G~Gn~p----~~~~~~~~l~~~~~~Gi~VV~~S 271 (335)
T PRK09461 211 PIGVVTIYPG--IS-AEV---VRNFLRQPVKALILRSYGVGNAP----QNPALLQELKEASERGIVVVNLT 271 (335)
T ss_pred cEEEEEecCC--CC-HHH---HHHHHhCCCCEEEEccCCCCCCC----CCHHHHHHHHHHHHCCCEEEEeC
Confidence 4555555542 22 233 34455667665444 78876642 12345556688999999998874
No 57
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=26.75 E-value=1.2e+02 Score=24.96 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=15.1
Q ss_pred HHHHHHCCCcEEEEcccCCC
Q 038289 100 MDDAIADGVDIISISIGMSS 119 (226)
Q Consensus 100 i~~a~~~g~~VinlS~G~~~ 119 (226)
++.|++.|+++||.+.|...
T Consensus 85 ~~~aL~~g~~~ind~~~~~~ 104 (210)
T PF00809_consen 85 AEAALKAGADIINDISGFED 104 (210)
T ss_dssp HHHHHHHTSSEEEETTTTSS
T ss_pred HHHHHHcCcceEEecccccc
Confidence 34455669999999999753
No 58
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=26.64 E-value=1.8e+02 Score=24.98 Aligned_cols=51 Identities=22% Similarity=0.276 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEecCC
Q 038289 91 CSGSAILQAMDDAIADGVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGN 150 (226)
Q Consensus 91 ~~~~~~~~ai~~a~~~g~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN 150 (226)
......++.++.++.+++|.|-++-.... .+...++++.++||.||.---.
T Consensus 75 ~d~~~Q~~~i~~~ia~~~daIiv~~~d~~---------~~~~~v~~a~~aGIpVv~~d~~ 125 (322)
T COG1879 75 NDVAKQIAQIEDLIAQGVDAIIINPVDPD---------ALTPAVKKAKAAGIPVVTVDSD 125 (322)
T ss_pred cChHHHHHHHHHHHHcCCCEEEEcCCChh---------hhHHHHHHHHHCCCcEEEEecC
Confidence 45556778888888999999877654432 3444559999999988876543
No 59
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=26.32 E-value=1.1e+02 Score=27.09 Aligned_cols=60 Identities=15% Similarity=0.219 Sum_probs=36.7
Q ss_pred CeEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEE-EEcccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEecC
Q 038289 78 SRIASYKACSEDGCSGSAILQAMDDAIADGVDII-SISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAG 149 (226)
Q Consensus 78 a~l~~~rv~~~~~~~~~~~~~ai~~a~~~g~~Vi-nlS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAG 149 (226)
.++..+++... . ...+ ++.+++.+++-| --++|.... . ..+..+++++.++|+.||.++=
T Consensus 212 ~~V~il~~~pG--~-~~~~---l~~~~~~~~~GlVl~~~G~Gn~--p----~~~~~~l~~a~~~gipVV~~sq 272 (323)
T smart00870 212 PKVAIVKAYPG--M-DAEL---LDALLDSGAKGLVLEGTGAGNV--P----PDLLEALKEALERGIPVVRTSR 272 (323)
T ss_pred CcEEEEEeCCC--C-CHHH---HHHHHhCCCCEEEEEeeCCCCC--C----HHHHHHHHHHHHCCCEEEEecc
Confidence 35666666653 2 2333 344556776654 448887654 2 2355566888999999998753
No 60
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=25.49 E-value=1.3e+02 Score=26.93 Aligned_cols=59 Identities=20% Similarity=0.249 Sum_probs=35.4
Q ss_pred CeEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEE-cccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEec
Q 038289 78 SRIASYKACSEDGCSGSAILQAMDDAIADGVDIISI-SIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSA 148 (226)
Q Consensus 78 a~l~~~rv~~~~~~~~~~~~~ai~~a~~~g~~Vinl-S~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AA 148 (226)
.++..+++... .. ..++ +.+++.+++-|-+ .+|....+ . ....++.++.++||.||..+
T Consensus 212 ~~V~il~~~pG--~~-~~~l---~~~~~~~~~GiVl~~~G~Gn~p--~----~~~~~l~~a~~~Gi~VV~~S 271 (336)
T TIGR00519 212 EKVALIKIYPG--IS-PDII---RNYLSKGYKGIVIEGTGLGHAP--Q----NKLQELQEASDRGVVVVMTT 271 (336)
T ss_pred CCEEEEEEcCC--CC-HHHH---HHHHhCCCCEEEEeeECCCCCC--H----HHHHHHHHHHHCCCEEEEeC
Confidence 34666666542 22 3333 4445667666544 88877642 2 12445588889999999874
No 61
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=24.96 E-value=2.1e+02 Score=22.42 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=30.9
Q ss_pred HHHHHHHHHCCCcEEEEcccCCCCCCCCCCccHHHHHHHHHhcCCc--EEEEecCCCCCC
Q 038289 97 LQAMDDAIADGVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGV--MVICSAGNDGPD 154 (226)
Q Consensus 97 ~~ai~~a~~~g~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi--~vV~AAGN~g~~ 154 (226)
-++++.|+++.+++|-+|-=... ....+....+.+.++|. +.|.+.||-.+.
T Consensus 53 ~e~v~aA~~~dv~vIgvSsl~g~------h~~l~~~lve~lre~G~~~i~v~~GGvip~~ 106 (143)
T COG2185 53 EEAVRAAVEEDVDVIGVSSLDGG------HLTLVPGLVEALREAGVEDILVVVGGVIPPG 106 (143)
T ss_pred HHHHHHHHhcCCCEEEEEeccch------HHHHHHHHHHHHHHhCCcceEEeecCccCch
Confidence 45666788899999888654433 12333333455555543 457778886543
No 62
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=24.95 E-value=4.1e+02 Score=22.48 Aligned_cols=66 Identities=21% Similarity=0.262 Sum_probs=44.5
Q ss_pred eEEEEeecCCCC---CCHHHHHHHHHHHHHCC-CcEEEEcccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEecCCCC
Q 038289 79 RIASYKACSEDG---CSGSAILQAMDDAIADG-VDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGNDG 152 (226)
Q Consensus 79 ~l~~~rv~~~~~---~~~~~~~~ai~~a~~~g-~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g 152 (226)
=|+.+|..+++| ......++.++.++..+ ++.|.+-+.... +.+......+.+.++-+|.+-=|-.
T Consensus 77 iI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~~--------~~~~~l~~~~~~~~~kvI~S~H~f~ 146 (253)
T PRK02412 77 LLFTFRTAKEGGEIALSDEEYLALIKAVIKSGLPDYIDVELFSGK--------DVVKEMVAFAHEHGVKVVLSYHDFE 146 (253)
T ss_pred EEEEECChhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCCh--------HHHHHHHHHHHHcCCEEEEeeCCCC
Confidence 466777766555 34556677788888888 899988775432 3344444566678888888877643
No 63
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=22.91 E-value=2.6e+02 Score=22.75 Aligned_cols=92 Identities=17% Similarity=0.137 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHH-CCCcEEEEcccCCCCCCCCCCccHHHHHHHHHhcCCcEEEE-ecCCCCCCCCCCC----CCCC----
Q 038289 94 SAILQAMDDAIA-DGVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVIC-SAGNDGPDPSTVV----NTAP---- 163 (226)
Q Consensus 94 ~~~~~ai~~a~~-~g~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~-AAGN~g~~~~~~~----~~~p---- 163 (226)
...-++++.|.+ -|.+-|++|.|.+.. .....+-+.++.+-.--++|-| =-|..|....... +..|
T Consensus 10 ~~A~ravE~aa~~iGgRCIS~S~GNPT~----lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v~~h~~IeV 85 (180)
T PF14097_consen 10 EYAKRAVEIAAKNIGGRCISQSAGNPTP----LSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYVANHPDIEV 85 (180)
T ss_pred HHHHHHHHHHHHHhCcEEEeccCCCCCc----CCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHHHcCCCceE
Confidence 345678888765 499999999998763 2333343444555433344333 3455443322111 1222
Q ss_pred -CeEEEeceecC--CccccceeeCCCeeE
Q 038289 164 -WIFTVGASSID--RDFQSTVLLGNGKTI 189 (226)
Q Consensus 164 -~vitVgA~~~~--~~~~~~s~~G~~~~i 189 (226)
++|+|++-+.. .....+|.--++..+
T Consensus 86 LG~iAVASnT~~~~g~~VD~sidr~G~~v 114 (180)
T PF14097_consen 86 LGAIAVASNTHGAEGTKVDVSIDRDGEIV 114 (180)
T ss_pred EEEEEEEecCCCCCceEeEEEEcCCCeEe
Confidence 56777765543 233344444444444
No 64
>PTZ00174 phosphomannomutase; Provisional
Probab=22.41 E-value=1.8e+02 Score=24.26 Aligned_cols=22 Identities=9% Similarity=0.055 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCcEEEEecCC
Q 038289 129 PIAIGAFHAEQMGVMVICSAGN 150 (226)
Q Consensus 129 ~~~~~~~~a~~~Gi~vV~AAGN 150 (226)
....++.++.++|+.||.|+|.
T Consensus 26 ~~~~ai~~l~~~Gi~~viaTGR 47 (247)
T PTZ00174 26 EMKDTLAKLKSKGFKIGVVGGS 47 (247)
T ss_pred HHHHHHHHHHHCCCEEEEEcCC
Confidence 3344445556666666666665
No 65
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=22.37 E-value=3.4e+02 Score=24.56 Aligned_cols=69 Identities=17% Similarity=0.167 Sum_probs=42.0
Q ss_pred ccCCCCeEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEE-EcccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEe
Q 038289 73 GGSPSSRIASYKACSEDGCSGSAILQAMDDAIADGVDIIS-ISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICS 147 (226)
Q Consensus 73 GvAP~a~l~~~rv~~~~~~~~~~~~~ai~~a~~~g~~Vin-lS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~A 147 (226)
-.|-+-++..+|+.-...+..+.+++||..|.++|-+|-- +-+-.-.+. ...+.++ ++..++|+.|+..
T Consensus 29 eAA~DP~V~aIk~TLYR~a~~S~iv~aLi~AA~nGK~Vtv~vELkARFDE-e~Ni~Wa-----~~Le~aGv~ViyG 98 (352)
T PF13090_consen 29 EAAEDPDVLAIKITLYRVASNSPIVNALIEAAENGKQVTVLVELKARFDE-ENNIHWA-----KRLEEAGVHVIYG 98 (352)
T ss_dssp HHCC-TTEEEEEEEESSS-TT-HHHHHHHHHHHTT-EEEEEESTTSSSTT-CCCCCCC-----HHHHHCT-EEEE-
T ss_pred HHhcCCCccEEEEEEEecCCCCHHHHHHHHHHHcCCEEEEEEEEeccccH-HHHhHHH-----hhHHhcCeEEEcC
Confidence 3456778888888766667788999999999999988843 355544321 2333344 3456778877753
No 66
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=22.17 E-value=2.1e+02 Score=21.78 Aligned_cols=50 Identities=12% Similarity=0.177 Sum_probs=27.9
Q ss_pred HHHHHHHHCCCcEEEEcccCCCCCCCCCCccHHHHHHHHHhcCC--cEEEEecCCCCC
Q 038289 98 QAMDDAIADGVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMG--VMVICSAGNDGP 153 (226)
Q Consensus 98 ~ai~~a~~~g~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~G--i~vV~AAGN~g~ 153 (226)
+.++.|.+.++++|-+|.-.... ...+...+....++| .+.|...|+-.+
T Consensus 44 ~~v~aa~e~~adii~iSsl~~~~------~~~~~~~~~~L~~~g~~~i~vivGG~~~~ 95 (132)
T TIGR00640 44 EIARQAVEADVHVVGVSSLAGGH------LTLVPALRKELDKLGRPDILVVVGGVIPP 95 (132)
T ss_pred HHHHHHHHcCCCEEEEcCchhhh------HHHHHHHHHHHHhcCCCCCEEEEeCCCCh
Confidence 44556788999999997655432 122222333333433 345666776543
No 67
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=21.57 E-value=1.8e+02 Score=25.71 Aligned_cols=20 Identities=25% Similarity=0.539 Sum_probs=12.8
Q ss_pred HHHHHHCCCcEEEEcccCCC
Q 038289 100 MDDAIADGVDIISISIGMSS 119 (226)
Q Consensus 100 i~~a~~~g~~VinlS~G~~~ 119 (226)
++.+++.++++|..++|.+.
T Consensus 106 ~~~~~~~~~~~v~~~~G~p~ 125 (330)
T PF03060_consen 106 LDVALEAKPDVVSFGFGLPP 125 (330)
T ss_dssp HHHHHHS--SEEEEESSSC-
T ss_pred cccccccceEEEEeecccch
Confidence 44455667779999999874
No 68
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=21.16 E-value=2.6e+02 Score=24.45 Aligned_cols=73 Identities=15% Similarity=0.169 Sum_probs=43.5
Q ss_pred HHHHHHHCCCcEEEEcccCCCCCCCCCCccHHHHHHHHHhcCCcEEEEecCCCCCCCC-CCCCCCCCeEEEeceecCCcc
Q 038289 99 AMDDAIADGVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVICSAGNDGPDPS-TVVNTAPWIFTVGASSIDRDF 177 (226)
Q Consensus 99 ai~~a~~~g~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgA~~~~~~~ 177 (226)
-++.|+..|+|||=|- .+.-+.+..+++....++-.++=++||=..+.- .+....-.+|++|+.+..-..
T Consensus 200 ~~~eAl~agaDiImLD---------Nm~~e~~~~av~~l~~~~~~~lEaSGgIt~~ni~~yA~tGVD~IS~galths~~~ 270 (280)
T COG0157 200 EAEEALEAGADIIMLD---------NMSPEELKEAVKLLGLAGRALLEASGGITLENIREYAETGVDVISVGALTHSAPA 270 (280)
T ss_pred HHHHHHHcCCCEEEec---------CCCHHHHHHHHHHhccCCceEEEEeCCCCHHHHHHHhhcCCCEEEeCccccCCcc
Confidence 3445677899998541 112234444445545667788888888654321 122234688999998876544
Q ss_pred ccc
Q 038289 178 QST 180 (226)
Q Consensus 178 ~~~ 180 (226)
-.+
T Consensus 271 lDi 273 (280)
T COG0157 271 LDI 273 (280)
T ss_pred cce
Confidence 333
No 69
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=20.48 E-value=3e+02 Score=22.32 Aligned_cols=47 Identities=23% Similarity=0.262 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCCCccHHHHHHHHHhcCCcEEEE
Q 038289 91 CSGSAILQAMDDAIADGVDIISISIGMSSLFQSDYLNDPIAIGAFHAEQMGVMVIC 146 (226)
Q Consensus 91 ~~~~~~~~ai~~a~~~g~~VinlS~G~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~ 146 (226)
.......+.++.++..++|.|=++..... .....+ +++.++||.||+
T Consensus 39 ~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~-----~~~~~l----~~~~~~gIpvv~ 85 (257)
T PF13407_consen 39 NDPEEQIEQIEQAISQGVDGIIVSPVDPD-----SLAPFL----EKAKAAGIPVVT 85 (257)
T ss_dssp TTHHHHHHHHHHHHHTTESEEEEESSSTT-----TTHHHH----HHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCEEEecCCCHH-----HHHHHH----HHHhhcCceEEE
Confidence 56688899999999999997765544332 122444 778899998887
Done!