BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038290
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1G0S|A Chain A, The Crystal Structure Of The E.Coli Adp-Ribose
Pyrophosphatase
pdb|1G0S|B Chain B, The Crystal Structure Of The E.Coli Adp-Ribose
Pyrophosphatase
pdb|1G9Q|A Chain A, Complex Structure Of The Adpr-Ase And Its Substrate Adp-
Ribose
pdb|1G9Q|B Chain B, Complex Structure Of The Adpr-Ase And Its Substrate Adp-
Ribose
pdb|1GA7|A Chain A, Crystal Structure Of The Adp-Ribose Pyrophosphatase In
Complex With Gd+3
pdb|1GA7|B Chain B, Crystal Structure Of The Adp-Ribose Pyrophosphatase In
Complex With Gd+3
pdb|1KHZ|A Chain A, Structure Of The Adpr-Ase In Complex With Ampcpr And Mg
pdb|1KHZ|B Chain B, Structure Of The Adpr-Ase In Complex With Ampcpr And Mg
Length = 209
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 88 IITRNCRPAM--LTSLGFTAEEGNILRGYCDASSAPSPDGLA 127
+I + +P + L S G T+E +I+ G DA++A GLA
Sbjct: 119 LIVKRTKPVLSFLASPGGTSERSSIMVGEVDATTASGIHGLA 160
>pdb|1VIQ|A Chain A, Crystal Structure Of Putative Adp Ribose Pyrophosphatase
pdb|1VIQ|B Chain B, Crystal Structure Of Putative Adp Ribose Pyrophosphatase
pdb|1VIQ|C Chain C, Crystal Structure Of Putative Adp Ribose Pyrophosphatase
Length = 220
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 88 IITRNCRPAM--LTSLGFTAEEGNILRGYCDASSAPSPDGLA 127
+I + +P + L S G T+E +I+ G DA++A GLA
Sbjct: 120 LIVKRTKPVLSFLASPGGTSERSSIMVGEVDATTASGIHGLA 161
>pdb|2CH9|A Chain A, Crystal Structure Of Dimeric Human Cystatin F
Length = 131
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 24 TCRNDRLNNNMKPGYDLVTRLEASGGLTECWNALMELKSCSNEIVIF 70
TC D LN+ +KPG+ + G L ++ + +C+N++ +F
Sbjct: 6 TCSQD-LNSRVKPGFPKTIKTNDPGVLQAARYSVEKFNNCTNDMFLF 51
>pdb|3UBO|A Chain A, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
pdb|3UBO|B Chain B, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
Length = 354
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Query: 64 SNEIVIFFLNSQANIGL----DCCRAIDIITRNCRPAMLTSLGFTAEEGNIL 111
S + I F N Q + L D RA++++ R+C+ A +T +EEG+++
Sbjct: 208 SGTVDIVFANRQEALALYETEDFDRALELLARDCKLAAVT----LSEEGSVV 255
>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
pdb|2X50|B Chain B, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
Length = 510
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 32 NNMKPGYDLVTRLEASGGLTECWNALMELK 61
++M YDLV SGGL WNA + K
Sbjct: 19 SHMSRAYDLVVLGAGSGGLEAGWNAAVTHK 48
>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2JK6|B Chain B, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2W0H|A Chain A, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2W0H|B Chain B, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2YAU|A Chain A, X-Ray Structure Of The Leishmania Infantum
Tryopanothione Reductase In Complex With Auranofin
pdb|2YAU|B Chain B, X-Ray Structure Of The Leishmania Infantum
Tryopanothione Reductase In Complex With Auranofin
pdb|4ADW|A Chain A, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
pdb|4ADW|B Chain B, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
Length = 511
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 32 NNMKPGYDLVTRLEASGGLTECWNALMELK 61
++M YDLV SGGL WNA + K
Sbjct: 19 SHMSRAYDLVVLGAGSGGLEAGWNAAVTHK 48
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 94 RPAMLTSLG-FTAEEGNILRGYCDASSAPSPD 124
RP L + G T +EG + R C S P+PD
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPD 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,646,132
Number of Sequences: 62578
Number of extensions: 122878
Number of successful extensions: 300
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 7
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)