Query 038290
Match_columns 139
No_of_seqs 92 out of 94
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 09:30:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038290.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038290hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00213 predicted protein; Pr 100.0 1.4E-30 3E-35 196.6 8.7 115 1-126 1-117 (118)
2 PF05617 Prolamin_like: Prolam 99.8 5.4E-21 1.2E-25 128.1 3.7 64 52-116 1-70 (70)
3 PF07172 GRP: Glycine rich pro 95.6 0.0089 1.9E-07 43.7 2.4 28 1-29 1-28 (95)
4 PLN00214 putative protein; Pro 72.9 2.4 5.2E-05 32.6 1.8 39 61-101 45-87 (115)
5 PF03058 Sar8_2: Sar8.2 family 53.7 10 0.00022 28.2 2.0 30 1-31 1-31 (93)
6 PF15284 PAGK: Phage-encoded v 40.0 29 0.00064 24.1 2.4 21 3-23 4-24 (61)
7 smart00499 AAI Plant lipid tra 29.9 20 0.00044 22.4 0.3 39 53-96 1-43 (79)
8 cd04660 nsLTP_like nsLTP_like: 23.2 48 0.001 22.2 1.2 19 77-95 23-41 (73)
9 cd01960 nsLTP1 nsLTP1: Non-spe 22.1 56 0.0012 22.4 1.4 34 53-91 3-37 (89)
10 PF09585 Lin0512_fam: Conserve 17.9 41 0.0009 25.6 0.0 32 73-105 14-46 (113)
No 1
>PLN00213 predicted protein; Provisional
Probab=99.97 E-value=1.4e-30 Score=196.61 Aligned_cols=115 Identities=23% Similarity=0.432 Sum_probs=85.7
Q ss_pred CCchHHHHHHHHHHHHHHhhhhhhccccccCCCCCCCCCch-hhccccCCcchhhhhhcCCCchHHHHHHHHHhCcc-cc
Q 038290 1 MTLKHVFFILAFTFLIMANIANATCRNDRLNNNMKPGYDLV-TRLEASGGLTECWNALMELKSCSNEIVIFFLNSQA-NI 78 (139)
Q Consensus 1 ma~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~rL~~~~~~~~CWsSl~~v~gC~~EI~~~flnG~~-~I 78 (139)
|..|+.++++++.-.++ + +.++-.+...+-+. .++ .++.+-.|+.||||||++++||+.||++++++||+ +|
T Consensus 1 m~iknV~~ll~v~cIvv----s-Vna~lpqf~~~fp~-~~p~~~~pg~pd~~kCwSSl~~vpGCv~EI~~si~~gkf~~I 74 (118)
T PLN00213 1 MSIKNVFLLLAVLCIIV----S-VNAQLPQFPAQLPF-LFPFQLIPGLPDITKCFSSVMDIPGCIAEISQSIFTGKFGNL 74 (118)
T ss_pred CchHHHHHHHHHHHHHh----e-eccCCCCCCCCCCC-CCCccCCCCCccHHHHHHHHcCCcchHHHHHHHHHhchhccc
Confidence 78888877766654444 2 22221111100011 111 23344459999999999999999999999999999 99
Q ss_pred CccccHHHHHhhcCcccccccCCCCCchhhhHhhhccccCCCCCCCCc
Q 038290 79 GLDCCRAIDIITRNCRPAMLTSLGFTAEEGNILRGYCDASSAPSPDGL 126 (139)
Q Consensus 79 Gp~CCkAI~~I~~~CWP~Mfp~~pf~p~e~~~LKg~C~~~~~psP~~~ 126 (139)
|++|||||++.+ +|||+| |++||||+ +||++|++++..+++++
T Consensus 75 g~aCCKAf~~~d-nCwP~~-P~~P~fPp---~LK~~Cs~i~~~~~~~~ 117 (118)
T PLN00213 75 GPACCKAFLDAD-NCIPKI-PFIPFFPP---MLKEQCSRVAGATPPIP 117 (118)
T ss_pred chHHHHHHHhhh-ccccCC-cCCCccch---HHHHHHhcccCCCCCCC
Confidence 999999999966 999995 99999999 99999999987666553
No 2
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=99.82 E-value=5.4e-21 Score=128.11 Aligned_cols=64 Identities=31% Similarity=0.721 Sum_probs=59.4
Q ss_pred hhhhhhcCCCchHHHHHHHHHhCc-cccCccccHHHHHhhcCcccc---cccCCCCCch--hhhHhhhccc
Q 038290 52 ECWNALMELKSCSNEIVIFFLNSQ-ANIGLDCCRAIDIITRNCRPA---MLTSLGFTAE--EGNILRGYCD 116 (139)
Q Consensus 52 ~CWsSl~~v~gC~~EI~~~flnG~-~~IGp~CCkAI~~I~~~CWP~---Mfp~~pf~p~--e~~~LKg~C~ 116 (139)
|||+++.++++|..||+.+|++|+ .+||++||++|+.++++|||. ||++.|+|++ + |.||++|+
T Consensus 1 kc~~~~~~~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~g~~C~~~l~~~~~~~p~~~~~~r-~~l~~~C~ 70 (70)
T PF05617_consen 1 KCLSSCAKSPGCGDEIFNSFFNGNKKNIGPECCKAINKMGKDCHPALFKMFPFTPFFKPLLR-DLLWNHCS 70 (70)
T ss_pred ChHHHcCCccchHHHHHHHHHcCCCCCCChHHHHHHHHHhHhHHHHHHHHccCCCCccchhH-HHHHhhcC
Confidence 699999999999999999999999 499999999999999999999 7778888877 6 79999996
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=95.63 E-value=0.0089 Score=43.66 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=19.0
Q ss_pred CCchHHHHHHHHHHHHHHhhhhhhccccc
Q 038290 1 MTLKHVFFILAFTFLIMANIANATCRNDR 29 (139)
Q Consensus 1 ma~~~~~l~~~~~~~~~a~~~~~~~~~~~ 29 (139)
||||. ||+++|.|.++.++||.+++|++
T Consensus 1 MaSK~-~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MASKA-FLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred CchhH-HHHHHHHHHHHHHHHhhhhhHHh
Confidence 99776 55555554444457788888888
No 4
>PLN00214 putative protein; Provisional
Probab=72.91 E-value=2.4 Score=32.58 Aligned_cols=39 Identities=15% Similarity=0.339 Sum_probs=30.9
Q ss_pred CchHHHHHHHHH-hCccccCccccHHHHHhhcCc---ccccccCC
Q 038290 61 KSCSNEIVIFFL-NSQANIGLDCCRAIDIITRNC---RPAMLTSL 101 (139)
Q Consensus 61 ~gC~~EI~~~fl-nG~~~IGp~CCkAI~~I~~~C---WP~Mfp~~ 101 (139)
+-|..||+..++ ||.. ...||+-+...+.+| |=++|..-
T Consensus 45 ~KCa~EI~a~i~~N~t~--s~~CC~~LVk~GK~CH~~LiK~i~~~ 87 (115)
T PLN00214 45 PKCALDIIAVVFENGTL--IDPCCNDLVKEGKVCHDTLIKYIADK 87 (115)
T ss_pred HhhHHHHHHHHHcCCCC--chHHHHHHHHHhhHHHHHHHHHHHcc
Confidence 459999999999 5543 889999999999999 44554433
No 5
>PF03058 Sar8_2: Sar8.2 family; InterPro: IPR004297 Members of this family are found in Solanaceae spp. plants, a taxonomic group (family) that includes pepper and tobacco plant species. Synthesis of these proteins is induced by Tobacco mosaic virus and salicylic acid []; indeed they are thought to be involved in the development of systemic acquired resistance (SAR) after an initial hypersensitive response to microbial infection [, ]. SAR is characterised by long-lasting resistance to infection by a wide range of pathogens, extending to plant tissues distant from the initial infection site [].
Probab=53.66 E-value=10 Score=28.23 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=19.4
Q ss_pred CCchH-HHHHHHHHHHHHHhhhhhhccccccC
Q 038290 1 MTLKH-VFFILAFTFLIMANIANATCRNDRLN 31 (139)
Q Consensus 1 ma~~~-~~l~~~~~~~~~a~~~~~~~~~~~~~ 31 (139)
|++|+ +||.++|++|++ -+|+-+.+|+...
T Consensus 1 M~~Ktnlfl~lSLailLm-IISSqv~AREms~ 31 (93)
T PF03058_consen 1 MVSKTNLFLCLSLAILLM-IISSQVDAREMSK 31 (93)
T ss_pred CcchhhhHHHHHHHHHHH-HHhhHHHHHHHhc
Confidence 88888 666677743433 1667777777653
No 6
>PF15284 PAGK: Phage-encoded virulence factor
Probab=40.01 E-value=29 Score=24.05 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=14.7
Q ss_pred chHHHHHHHHHHHHHHhhhhh
Q 038290 3 LKHVFFILAFTFLIMANIANA 23 (139)
Q Consensus 3 ~~~~~l~~~~~~~~~a~~~~~ 23 (139)
.|++||.+.++|..++-.|++
T Consensus 4 ~ksifL~l~~~LsA~~FSasa 24 (61)
T PF15284_consen 4 FKSIFLALVFILSAAGFSASA 24 (61)
T ss_pred HHHHHHHHHHHHHHhhhhHHH
Confidence 477888888887777655544
No 7
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=29.91 E-value=20 Score=22.44 Aligned_cols=39 Identities=26% Similarity=0.580 Sum_probs=24.5
Q ss_pred hhhhhcCCCchHHHHHHHHHhCc---cccCccccHHHHHh-hcCcccc
Q 038290 53 CWNALMELKSCSNEIVIFFLNSQ---ANIGLDCCRAIDII-TRNCRPA 96 (139)
Q Consensus 53 CWsSl~~v~gC~~EI~~~flnG~---~~IGp~CCkAI~~I-~~~CWP~ 96 (139)
|...+.++.+|..- +++. ..-...||..+..+ ...|+=.
T Consensus 1 C~~~~~~~~~c~~~-----~~~~~~~~~p~~~CC~~l~~~~~~~C~C~ 43 (79)
T smart00499 1 CGQVLLQLAPCLSY-----LTGGSPGAPPSQQCCSQLRGLNSAQCRCL 43 (79)
T ss_pred ChhhhhhHHhhHHH-----HcCCCCCCCCchHHHHHHHHhcccCCcch
Confidence 33444444455533 3332 35667899999999 8888654
No 8
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=23.19 E-value=48 Score=22.18 Aligned_cols=19 Identities=21% Similarity=0.432 Sum_probs=14.9
Q ss_pred ccCccccHHHHHhhcCccc
Q 038290 77 NIGLDCCRAIDIITRNCRP 95 (139)
Q Consensus 77 ~IGp~CCkAI~~I~~~CWP 95 (139)
.-..+||.+|+.++..|-=
T Consensus 23 ~Ps~~CC~~vk~~~~~C~C 41 (73)
T cd04660 23 PPSRECCAALRRADLPCLC 41 (73)
T ss_pred CCCHHHHHHHHcCCcCCEe
Confidence 3567899999998877753
No 9
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=22.10 E-value=56 Score=22.39 Aligned_cols=34 Identities=18% Similarity=0.475 Sum_probs=23.1
Q ss_pred hhhhhcCCCchHHHHHHHHHhCcc-ccCccccHHHHHhhc
Q 038290 53 CWNALMELKSCSNEIVIFFLNSQA-NIGLDCCRAIDIITR 91 (139)
Q Consensus 53 CWsSl~~v~gC~~EI~~~flnG~~-~IGp~CCkAI~~I~~ 91 (139)
|=..+..+..|.. |++|.. .-.+.||.++..+..
T Consensus 3 C~~v~~~l~~C~~-----y~~g~~~~Ps~~CC~~v~~l~~ 37 (89)
T cd01960 3 CGQVTSLLAPCLG-----YLTGGGPAPSPACCSGVKSLNG 37 (89)
T ss_pred HHHHHhhHHhHHH-----HHhCCCCCCChHHhhhhHHHhh
Confidence 5555566666763 345554 678889999999753
No 10
>PF09585 Lin0512_fam: Conserved hypothetical protein (Lin0512_fam); InterPro: IPR011719 This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N terminus.
Probab=17.93 E-value=41 Score=25.63 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=25.0
Q ss_pred hCccccCccccHHHH-HhhcCcccccccCCCCCc
Q 038290 73 NSQANIGLDCCRAID-IITRNCRPAMLTSLGFTA 105 (139)
Q Consensus 73 nG~~~IGp~CCkAI~-~I~~~CWP~Mfp~~pf~p 105 (139)
.|| +.-.++++|++ .|.++|.|.||-..|+..
T Consensus 14 hGq-D~TkAA~RAv~DAI~~nslp~l~~~~~~~~ 46 (113)
T PF09585_consen 14 HGQ-DYTKAAVRAVRDAISHNSLPGLFEILGLDL 46 (113)
T ss_pred cCC-cHHHHHHHHHHHHHhhcchHHHHHHcCCCh
Confidence 455 56678888885 688999999999888843
Done!