Query 038290
Match_columns 139
No_of_seqs 92 out of 94
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 16:16:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038290.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038290hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebo_A Ebola virus envelope gl 12.0 54 0.0018 22.3 0.3 9 77-85 47-55 (74)
2 2nrg_A Intrinsic membrane prot 8.4 3.7E+02 0.013 18.7 3.5 29 22-50 48-77 (82)
3 1ebo_A Ebola virus envelope pr 8.2 89 0.0031 23.2 0.3 8 77-84 84-91 (131)
4 2knp_A Mcocc-1; disulfide-rich 7.8 67 0.0023 18.7 -0.4 11 91-101 17-27 (33)
5 2ljo_A Non-specific lipid-tran 7.7 1.7E+02 0.0057 19.9 1.5 20 71-90 17-36 (93)
6 1k8k_E P21, ARP2/3 complex 21 7.2 1.6E+02 0.0055 23.0 1.4 34 82-115 91-133 (178)
7 3l32_A Phosphoprotein; antipar 6.5 1.2E+02 0.0041 19.0 0.2 20 39-58 15-34 (45)
8 1n89_A Lipid transfer protein; 6.4 2.2E+02 0.0074 17.9 1.5 19 76-95 18-36 (67)
9 4ank_A Transthyretin; hormone 6.0 1.2E+02 0.0042 22.6 0.1 18 1-18 1-18 (147)
10 1bwo_A NS-LTP1, nonspecific li 6.0 2.9E+02 0.0099 18.3 2.0 73 53-131 3-88 (90)
No 1
>2ebo_A Ebola virus envelope glycoprotein; filovirus, GP2, coat protein; 1.90A {Zaire ebolavirus - mayinga} SCOP: h.3.2.1
Probab=12.01 E-value=54 Score=22.31 Aligned_cols=9 Identities=33% Similarity=0.689 Sum_probs=7.3
Q ss_pred ccCccccHH
Q 038290 77 NIGLDCCRA 85 (139)
Q Consensus 77 ~IGp~CCkA 85 (139)
-+||+||-.
T Consensus 47 ilgpdc~i~ 55 (74)
T 2ebo_A 47 ILGPDCAIE 55 (74)
T ss_dssp HHGGGGGCC
T ss_pred ecCCccccC
Confidence 699999943
No 2
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=8.39 E-value=3.7e+02 Score=18.66 Aligned_cols=29 Identities=17% Similarity=0.051 Sum_probs=17.1
Q ss_pred hhhccccccC-CCCCCCCCchhhccccCCc
Q 038290 22 NATCRNDRLN-NNMKPGYDLVTRLEASGGL 50 (139)
Q Consensus 22 ~~~~~~~~~~-~~~~~~~~l~~rL~~~~~~ 50 (139)
..--++-+|. ++-+|.+...+-|+.+-++
T Consensus 48 l~~iG~~LPE~Sr~aP~P~~~~~~~~~~~~ 77 (82)
T 2nrg_A 48 FRVVGRMLPIQENQAPAPNITGALETGIEL 77 (82)
T ss_dssp HHHHHHSSTTTTTCCSSSSSCSSSSSSCCT
T ss_pred HHHHHHhCchhcccCCCCccchhHHHHHHH
Confidence 4556666663 2334666777777755444
No 3
>1ebo_A Ebola virus envelope protein chimera consisting of A fragment of GCN4 zipper cloned...; membrane fusion subunit, viral protein; 3.00A {Ebola virus SP} SCOP: h.3.2.1
Probab=8.22 E-value=89 Score=23.22 Aligned_cols=8 Identities=38% Similarity=0.663 Sum_probs=6.8
Q ss_pred ccCccccH
Q 038290 77 NIGLDCCR 84 (139)
Q Consensus 77 ~IGp~CCk 84 (139)
-+||+||-
T Consensus 84 iLGPdCcI 91 (131)
T 1ebo_A 84 ILGPDCRI 91 (131)
T ss_dssp HHGGGGGC
T ss_pred ecCCcccc
Confidence 59999994
No 4
>2knp_A Mcocc-1; disulfide-rich peptides, cystine knot motif, cytotoxic, melanoma cell LINE, non-hemolytic, seeds extract, unknown function; NMR {Momordica cochinchinensis}
Probab=7.83 E-value=67 Score=18.74 Aligned_cols=11 Identities=18% Similarity=0.570 Sum_probs=7.4
Q ss_pred cCcccccccCC
Q 038290 91 RNCRPAMLTSL 101 (139)
Q Consensus 91 ~~CWP~Mfp~~ 101 (139)
-+|||..-|..
T Consensus 17 crcwptvtpgv 27 (33)
T 2knp_A 17 CRCWPTVTPGV 27 (33)
T ss_dssp CCEEECSSTTE
T ss_pred eeeccccCCCe
Confidence 37999875543
No 5
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=7.69 E-value=1.7e+02 Score=19.87 Aligned_cols=20 Identities=15% Similarity=0.527 Sum_probs=15.1
Q ss_pred HHhCccccCccccHHHHHhh
Q 038290 71 FLNSQANIGLDCCRAIDIIT 90 (139)
Q Consensus 71 flnG~~~IGp~CCkAI~~I~ 90 (139)
|+.|.....+.||..++.+.
T Consensus 17 Yv~g~~~p~~~CC~gv~~l~ 36 (93)
T 2ljo_A 17 YLTGGPGPSPQCCGGVKKLL 36 (93)
T ss_dssp HHTTSSCCCHHHHHHHHHHH
T ss_pred HHcCCCCCCCchhhHHHHHH
Confidence 34555568889999998885
No 6
>1k8k_E P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.148.1.1 PDB: 1tyq_E* 1u2v_E* 2p9i_E* 2p9k_E* 2p9l_E 2p9n_E* 2p9p_E* 2p9s_E* 2p9u_E* 3dxk_E* 3dxm_E* 3rse_E
Probab=7.18 E-value=1.6e+02 Score=23.03 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=20.5
Q ss_pred ccHHHHHhhcCccc----ccccCCCCCc-----hhhhHhhhcc
Q 038290 82 CCRAIDIITRNCRP----AMLTSLGFTA-----EEGNILRGYC 115 (139)
Q Consensus 82 CCkAI~~I~~~CWP----~Mfp~~pf~p-----~e~~~LKg~C 115 (139)
+=|++..+.-+=+| .=||.+.++. .|+|.||+|=
T Consensus 91 a~k~l~~lal~~F~iPGd~gFpLn~~y~~P~~~~e~d~lR~Yl 133 (178)
T 1k8k_E 91 GEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYL 133 (178)
T ss_dssp HHHHHHHHHHSCCCCTTSTTCTTTTTSCCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCCCCCCCCccccccCCCChhHHHHHHHHH
Confidence 34445444433344 2466676655 7999999983
No 7
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=6.46 E-value=1.2e+02 Score=19.01 Aligned_cols=20 Identities=10% Similarity=0.456 Sum_probs=16.7
Q ss_pred CchhhccccCCcchhhhhhc
Q 038290 39 DLVTRLEASGGLTECWNALM 58 (139)
Q Consensus 39 ~l~~rL~~~~~~~~CWsSl~ 58 (139)
-+..|++.|++..|=||...
T Consensus 15 qiVrkmKtGe~FfKiWS~~~ 34 (45)
T 3l32_A 15 QIVRQMRSGERFLKIWSQTV 34 (45)
T ss_dssp HHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHH
Confidence 36688888999999999864
No 8
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=6.42 E-value=2.2e+02 Score=17.93 Aligned_cols=19 Identities=21% Similarity=0.490 Sum_probs=14.2
Q ss_pred cccCccccHHHHHhhcCccc
Q 038290 76 ANIGLDCCRAIDIITRNCRP 95 (139)
Q Consensus 76 ~~IGp~CCkAI~~I~~~CWP 95 (139)
....++||.+++.. ..|-=
T Consensus 18 ~~Ps~~CC~~lk~~-~~ClC 36 (67)
T 1n89_A 18 AKPSGECCGNLRAQ-QGCFC 36 (67)
T ss_dssp CCCCHHHHHHHHHH-SSHHH
T ss_pred CCCCHHHHHhhCCC-CCCCC
Confidence 36778999999975 56643
No 9
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens}
Probab=6.02 E-value=1.2e+02 Score=22.61 Aligned_cols=18 Identities=6% Similarity=0.261 Sum_probs=0.0
Q ss_pred CCchHHHHHHHHHHHHHH
Q 038290 1 MTLKHVFFILAFTFLIMA 18 (139)
Q Consensus 1 ma~~~~~l~~~~~~~~~a 18 (139)
|++.+++|+....+++.+
T Consensus 1 m~~~~~~l~~la~l~~~s 18 (147)
T 4ank_A 1 MASHRLLLLCLAGLVFVS 18 (147)
T ss_dssp ------------------
T ss_pred CchHHHHHHHHHHHHhhc
Confidence 888898887766666653
No 10
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=6.01 E-value=2.9e+02 Score=18.28 Aligned_cols=73 Identities=14% Similarity=0.395 Sum_probs=40.7
Q ss_pred hhhhhcCCCchHHHHHHHHHhCccccCccccHHHHHhhc------------CcccccccCC-CCCchhhhHhhhccccCC
Q 038290 53 CWNALMELKSCSNEIVIFFLNSQANIGLDCCRAIDIITR------------NCRPAMLTSL-GFTAEEGNILRGYCDASS 119 (139)
Q Consensus 53 CWsSl~~v~gC~~EI~~~flnG~~~IGp~CCkAI~~I~~------------~CWP~Mfp~~-pf~p~e~~~LKg~C~~~~ 119 (139)
|=+.+.++..|..- +.|.....++||.+++.+.. .|.-...... ++-+.-+.-|-+.|.-.
T Consensus 3 C~~v~~~L~pCl~y-----~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~- 76 (90)
T 1bwo_A 3 CGHVDSLVRPCLSY-----VQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVN- 76 (90)
T ss_dssp HHHHHHHHGGGHHH-----HTTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHHHHHTCC-
T ss_pred HHHHHHhhcccHHH-----HcCCCCCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHHHHcCCC-
Confidence 44445555566643 33433467789999998763 4542222333 34455556777888654
Q ss_pred CCCCCCcccccc
Q 038290 120 APSPDGLAVICQ 131 (139)
Q Consensus 120 ~psP~~~a~~~~ 131 (139)
.|-|-.+.++|.
T Consensus 77 ~p~~is~~~dC~ 88 (90)
T 1bwo_A 77 LPYTISLNIDCS 88 (90)
T ss_dssp CSSCCCTTCCGG
T ss_pred CCCCCCCCCCCC
Confidence 344444555543
Done!