Query 038290
Match_columns 139
No_of_seqs 92 out of 94
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 16:16:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038290.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038290hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fk5a_ a.52.1.1 (A:) Plant no 13.5 30 0.0022 21.8 1.1 73 53-131 4-90 (93)
2 d1mida_ a.52.1.1 (A:) Plant no 12.8 33 0.0024 21.6 1.1 73 53-131 3-88 (91)
3 d1kyqa2 e.37.1.1 (A:151-273) B 11.5 41 0.003 22.7 1.3 17 100-116 107-123 (123)
4 d2nt0a1 b.71.1.2 (A:1-77,A:432 6.4 1.4E+02 0.0099 20.2 2.4 32 91-125 2-33 (143)
5 d1hssa_ a.52.1.2 (A:) 0.19 alp 6.2 80 0.0058 21.5 0.9 35 60-95 13-50 (120)
6 d1gv2a2 a.4.1.3 (A:144-190) c- 5.9 82 0.006 17.4 0.7 16 101-116 2-17 (47)
7 d1k8rb_ d.15.1.5 (B:) Protein 4.9 1.5E+02 0.011 19.3 1.7 17 57-73 14-30 (95)
8 d2cqea2 g.66.1.1 (A:429-457) Z 4.9 93 0.0068 16.5 0.5 9 111-119 13-21 (29)
9 d1gvda_ a.4.1.3 (A:) c-Myb, DN 4.8 1E+02 0.0074 17.2 0.7 18 100-117 3-20 (52)
10 d1k8ke_ a.148.1.1 (E:) Arp2/3 4.4 1.4E+02 0.01 21.4 1.4 20 97-116 109-133 (174)
No 1
>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}
Probab=13.52 E-value=30 Score=21.82 Aligned_cols=73 Identities=18% Similarity=0.422 Sum_probs=41.4
Q ss_pred hhhhhcCCCchHHHHHHHHHhCcc-ccCccccHHHHHhhc------------Cccccccc-CCCCCchhhhHhhhccccC
Q 038290 53 CWNALMELKSCSNEIVIFFLNSQA-NIGLDCCRAIDIITR------------NCRPAMLT-SLGFTAEEGNILRGYCDAS 118 (139)
Q Consensus 53 CWsSl~~v~gC~~EI~~~flnG~~-~IGp~CCkAI~~I~~------------~CWP~Mfp-~~pf~p~e~~~LKg~C~~~ 118 (139)
|=+.+.++-.|.. |++|.. .-.+.||.+++.+.+ +|.=.... ..|+-+.-..-|=.-|.-.
T Consensus 4 C~~v~~~l~pCl~-----Yltg~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~ 78 (93)
T d1fk5a_ 4 CGQVASAIAPCIS-----YARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVS 78 (93)
T ss_dssp HHHHHHHHGGGHH-----HHTTCSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHhhhhHH-----HHhCCCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcCCC
Confidence 4444555555652 456665 567899999998863 23322222 2244555555677888644
Q ss_pred CCCCCCCcccccc
Q 038290 119 SAPSPDGLAVICQ 131 (139)
Q Consensus 119 ~~psP~~~a~~~~ 131 (139)
. |-|-.+..+|.
T Consensus 79 l-~~pis~~~dCs 90 (93)
T d1fk5a_ 79 I-PYTISTSTDCS 90 (93)
T ss_dssp C-SSCCSTTCCGG
T ss_pred C-CCCCCCCCCCC
Confidence 3 33555555553
No 2
>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=12.76 E-value=33 Score=21.61 Aligned_cols=73 Identities=14% Similarity=0.408 Sum_probs=42.2
Q ss_pred hhhhhcCCCchHHHHHHHHHhCccccCccccHHHHHhhc------------CcccccccC-CCCCchhhhHhhhccccCC
Q 038290 53 CWNALMELKSCSNEIVIFFLNSQANIGLDCCRAIDIITR------------NCRPAMLTS-LGFTAEEGNILRGYCDASS 119 (139)
Q Consensus 53 CWsSl~~v~gC~~EI~~~flnG~~~IGp~CCkAI~~I~~------------~CWP~Mfp~-~pf~p~e~~~LKg~C~~~~ 119 (139)
|=+.+..+-.|.. |++|.....+.||.+++.+.. +|.-..-.. .|+-+.-...|=+-|.-..
T Consensus 3 C~~v~~~l~pCl~-----Yl~g~~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~~ 77 (91)
T d1mida_ 3 CGQVDSKMKPCLT-----YVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNV 77 (91)
T ss_dssp HHHHHHHHGGGHH-----HHTTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhhHH-----HHcCCCCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHHHHhchHhcCCCC
Confidence 4444555555653 456666788999999988863 233222112 2344555567888886544
Q ss_pred CCCCCCcccccc
Q 038290 120 APSPDGLAVICQ 131 (139)
Q Consensus 120 ~psP~~~a~~~~ 131 (139)
|-|-.+.++|.
T Consensus 78 -p~pis~~~dC~ 88 (91)
T d1mida_ 78 -PYTISPDIDCS 88 (91)
T ss_dssp -CSCCCTTCCGG
T ss_pred -CCCCCCCCCCC
Confidence 33555555553
No 3
>d1kyqa2 e.37.1.1 (A:151-273) Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.50 E-value=41 Score=22.68 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=14.3
Q ss_pred CCCCCchhhhHhhhccc
Q 038290 100 SLGFTAEEGNILRGYCD 116 (139)
Q Consensus 100 ~~pf~p~e~~~LKg~C~ 116 (139)
..|-+|++.+++++||+
T Consensus 107 ~~~~~pp~~~~~~~~~~ 123 (123)
T d1kyqa2 107 CSLQFPPRERLLSEYCS 123 (123)
T ss_dssp SCCCCCCHHHHHHHSBC
T ss_pred cCCCCCChhHHHHHhhC
Confidence 34778999999999996
No 4
>d2nt0a1 b.71.1.2 (A:1-77,A:432-497) Glucosylceramidase {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.44 E-value=1.4e+02 Score=20.18 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=20.8
Q ss_pred cCcccccccCCCCCchhhhHhhhccccCCCCCCCC
Q 038290 91 RNCRPAMLTSLGFTAEEGNILRGYCDASSAPSPDG 125 (139)
Q Consensus 91 ~~CWP~Mfp~~pf~p~e~~~LKg~C~~~~~psP~~ 125 (139)
..||++.|..-++.=. -=-.|||....|.+..
T Consensus 2 ~pC~~~~~~~~~~VCv---Cnat~cD~~~~~~~~~ 33 (143)
T d2nt0a1 2 RPCIPKSFGYSSVVCV---CNATYCDSFDPPTFPA 33 (143)
T ss_dssp BCCCEECCSSSSCEEE---ECSSCCCBCCCCCCCC
T ss_pred CCccccccCCCCEEEE---EeCCcccccCCCCcCC
Confidence 4799999876655521 0136899987666554
No 5
>d1hssa_ a.52.1.2 (A:) 0.19 alpha-amylase inhibitor {Wheat (Triticum aestivum) [TaxId: 4565]}
Probab=6.17 E-value=80 Score=21.50 Aligned_cols=35 Identities=26% Similarity=0.529 Sum_probs=23.8
Q ss_pred CCchHHHHHHHHHhCcc---ccCccccHHHHHhhcCccc
Q 038290 60 LKSCSNEIVIFFLNSQA---NIGLDCCRAIDIITRNCRP 95 (139)
Q Consensus 60 v~gC~~EI~~~flnG~~---~IGp~CCkAI~~I~~~CWP 95 (139)
+++|-..+ +.=..|.. .+-..||+-+..|.+.|+=
T Consensus 13 L~~CR~yv-~~q~~G~~~~~~~k~~CC~eLa~i~~~CRC 50 (120)
T d1hssa_ 13 LPACRPLL-RLQCNGSQVPEAVLRDCCQQLAHISEWCRC 50 (120)
T ss_dssp CTTHHHHH-HHHTTTCCCCHHHHHHHHHHHHTSCTTTHH
T ss_pred cHHHHHHH-HHHhcCCCCcchHHHHHHHHHHhcCcccch
Confidence 56677554 33344443 4557899999999999974
No 6
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.87 E-value=82 Score=17.35 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=12.3
Q ss_pred CCCCchhhhHhhhccc
Q 038290 101 LGFTAEEGNILRGYCD 116 (139)
Q Consensus 101 ~pf~p~e~~~LKg~C~ 116 (139)
.||+++|-++|...-.
T Consensus 2 ~~WT~eED~~L~~~v~ 17 (47)
T d1gv2a2 2 TSWTEEEDRIIYQAHK 17 (47)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4899999988876543
No 7
>d1k8rb_ d.15.1.5 (B:) Protein kinase byr2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=4.93 E-value=1.5e+02 Score=19.28 Aligned_cols=17 Identities=6% Similarity=0.077 Sum_probs=13.4
Q ss_pred hcCCCchHHHHHHHHHh
Q 038290 57 LMELKSCSNEIVIFFLN 73 (139)
Q Consensus 57 l~~v~gC~~EI~~~fln 73 (139)
..++.||.+||+.-.+.
T Consensus 14 ~vni~gC~~ai~~~~Lk 30 (95)
T d1k8rb_ 14 AVQSRGDYQKTLAIALK 30 (95)
T ss_dssp EEECCSCHHHHHHHHHH
T ss_pred EEEeccCHHHHHHHHHH
Confidence 57899999997766554
No 8
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.90 E-value=93 Score=16.49 Aligned_cols=9 Identities=22% Similarity=0.970 Sum_probs=6.4
Q ss_pred hhhccccCC
Q 038290 111 LRGYCDASS 119 (139)
Q Consensus 111 LKg~C~~~~ 119 (139)
+.|||++..
T Consensus 13 vqGyCtrge 21 (29)
T d2cqea2 13 ITGFCARAE 21 (29)
T ss_dssp TTTCCSCST
T ss_pred eeeeecCCc
Confidence 568888753
No 9
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.82 E-value=1e+02 Score=17.18 Aligned_cols=18 Identities=22% Similarity=0.121 Sum_probs=13.9
Q ss_pred CCCCCchhhhHhhhcccc
Q 038290 100 SLGFTAEEGNILRGYCDA 117 (139)
Q Consensus 100 ~~pf~p~e~~~LKg~C~~ 117 (139)
..|++++|-+.|+..-..
T Consensus 3 rg~WT~eED~~L~~~v~~ 20 (52)
T d1gvda_ 3 KGPWTKEEDQRLIKLVQK 20 (52)
T ss_dssp CCSCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 358999999999876543
No 10
>d1k8ke_ a.148.1.1 (E:) Arp2/3 complex 21 kDa subunit ARPC3 {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.36 E-value=1.4e+02 Score=21.39 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=14.2
Q ss_pred cccCCCCCc-----hhhhHhhhccc
Q 038290 97 MLTSLGFTA-----EEGNILRGYCD 116 (139)
Q Consensus 97 Mfp~~pf~p-----~e~~~LKg~C~ 116 (139)
=||.+.++. +|+|.||+|=.
T Consensus 109 gFpLn~~y~~P~~~~e~e~lR~Yl~ 133 (174)
T d1k8ke_ 109 GFPLNAIYAKPANKQEDEVMRAYLQ 133 (174)
T ss_dssp TCTTTTTSCCCSSHHHHHHHHHHHH
T ss_pred CCCcccccCCCCChHHHHHHHHHHH
Confidence 366676663 68999998743
Done!