BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038292
(122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 21/130 (16%)
Query: 1 PEKVVGLSTHSDDSALAILLEINEVEGLQIKKDGKWIHITPFPNAFVVNVGNVLET---- 56
P+ + GL H+D + +L + ++V GLQ+ KDG+WI + P ++ VVN+G+ LE
Sbjct: 168 PDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNG 227
Query: 57 --------------HWRLSIGTIYSVRYDGEMYPASNLV---SENTPPLFKRVTVEEYFG 99
R S+ + Y+ D +YPA LV +E ++ + ++Y
Sbjct: 228 KYKSVXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXK 287
Query: 100 NLCARKLRGK 109
K + K
Sbjct: 288 LYAGLKFQAK 297
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 1 PEKVVGLSTHSDDSALAILLEINEVEGLQIKKDGKWIHITPFPNAFVVNVGNVLETHWRL 60
PE +G+ H+D SAL +L N V GLQ+ +GKW+ P++ V+++G+ LE L
Sbjct: 223 PELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEI---L 278
Query: 61 SIGTIYSVRYDG 72
S G S+ + G
Sbjct: 279 SNGKYKSILHRG 290
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 1 PEKVVGLSTHSDDSALAILLEINEVEGLQIKKDGKWIHITPFPNAFVVNVGNVLETHWRL 60
PE +G+ H+D SAL +L N V GLQ+ +GKW+ P++ V+++G+ LE L
Sbjct: 222 PELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEI---L 277
Query: 61 SIGTIYSVRYDG 72
S G S+ + G
Sbjct: 278 SNGKYKSILHRG 289
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 1 PEKVVGLSTHSDDSALAILLEINEVEGLQIKKDGKWIHITPFPNAFVVNVGNVLETHWRL 60
PE +G+ H+D SAL +L N V GLQ+ +GKW+ P++ V ++G+ LE L
Sbjct: 223 PELALGVEAHTDVSALTFILH-NXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEI---L 278
Query: 61 SIGTIYSVRYDG 72
S G S+ + G
Sbjct: 279 SNGKYKSILHRG 290
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 1 PEKVVGL--STHSDDSALAILLEINEVEGLQI-KKDGKWIHITPFPNAFVVNVGNVLE 55
P+ G+ H D + + +LL E GL++ +DG+W+ I P P V+N+G+ LE
Sbjct: 180 PKDATGVRAGAHGDINTITLLLGAEE-GGLEVLDRDGQWLPINPPPGCLVINIGDXLE 236
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 4 VVGLSTHSDDSALAILLEINEVEGLQIK-KDGKWIHITPFPNAFVVNVGNVLE 55
+ + H D + + +L NE GLQ+K KDG W+ + ++N+G+ L+
Sbjct: 168 AIRAAAHEDINLITVLPTANE-PGLQVKAKDGSWLDVPSDFGNIIINIGDXLQ 219
>pdb|3I4E|A Chain A, Crystal Structure Of Isocitrate Lyase From Burkholderia
Pseudomallei
pdb|3I4E|B Chain B, Crystal Structure Of Isocitrate Lyase From Burkholderia
Pseudomallei
pdb|3I4E|C Chain C, Crystal Structure Of Isocitrate Lyase From Burkholderia
Pseudomallei
pdb|3I4E|D Chain D, Crystal Structure Of Isocitrate Lyase From Burkholderia
Pseudomallei
Length = 439
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 9/65 (13%)
Query: 37 IHITPFPNAFVVNVGNVLETHWRLSIGTIY--------SVRYDGEMYPASNLVSENTPPL 88
I+ PF NA GN + + IY GEMYP +L N+ PL
Sbjct: 61 INNEPFVNALGALTGNQAMQQVKAGLKAIYLSGWQVAGDANVAGEMYPDQSLYPANSVPL 120
Query: 89 -FKRV 92
KR+
Sbjct: 121 VVKRI 125
>pdb|2YY8|A Chain A, Crystal Structure Of Archaeal Trna-Methylase For Position
56 (Atrm56) From Pyrococcus Horikoshii, Complexed With
S- Adenosyl-L-Methionine
pdb|2YY8|B Chain B, Crystal Structure Of Archaeal Trna-Methylase For Position
56 (Atrm56) From Pyrococcus Horikoshii, Complexed With
S- Adenosyl-L-Methionine
Length = 201
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 5 VGLSTHSDDSALAILLEINEVEGLQIKKDGKWIHITPFPNA 45
+G HS+ +ALA+LL+ +EG +KK+ K I P A
Sbjct: 127 IGNQPHSEVAALAVLLD-RLLEGKGLKKEFKGAKIKIVPQA 166
>pdb|3P1U|A Chain A, Crystal Structure Of A Susd Homolog (Bdi_0600) From
Parabacteroides Distasonis Atcc 8503 At 2.05 A
Resolution
pdb|3P1U|B Chain B, Crystal Structure Of A Susd Homolog (Bdi_0600) From
Parabacteroides Distasonis Atcc 8503 At 2.05 A
Resolution
Length = 529
Score = 25.4 bits (54), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 58 WRLSIGTIYSVRYDGEMYPASNLVSENTPPLFKRVTVEEYFGNLCA 103
WR+ + T+ + ++ +PA +V N P + +EYF L A
Sbjct: 108 WRVYVHTLAADKFGPXPFPAYEIVEANPPYKSLKDIYDEYFRELDA 153
>pdb|3FGB|A Chain A, Crystal Structure Of The Q89zh8_bactn Protein From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr289b.
pdb|3FGB|B Chain B, Crystal Structure Of The Q89zh8_bactn Protein From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr289b
Length = 361
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 14/75 (18%)
Query: 43 PNAFVVNVGNVLETHWRLSIGTIYSVRYDGEMYPASNLVSENTPPLFKRVTVEEYFGNLC 102
P + N NV+ ++ +++ + DG + PAS +V ++ G+
Sbjct: 94 PCYIITNGSNVVTANYSGGSISVFPIDKDGSLLPASEVV--------------KFKGSGA 139
Query: 103 ARKLRGKSHLDALRI 117
++ + K HL +RI
Sbjct: 140 DKERQEKPHLHCVRI 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,752,417
Number of Sequences: 62578
Number of extensions: 141709
Number of successful extensions: 292
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 283
Number of HSP's gapped (non-prelim): 10
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)