Your job contains 1 sequence.
>038298
MDVDQDSTFIHQYQGNSQSNSTTHGSMPFSGLISFQDTDSLASYYSQMSNPNSEYYCTIK
SEDKRASDENLMAMKTRIVNKPGQGNRVASRSPLQAQEHVIAERKRREKMNQQFIALSAV
IPGIKQMNKASVLEGTIKHLKELQERGKKLVEHTKRKAPESVVSVKRSQQTLPDIVVRVS
DNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLT
VKELVKNLRLALSKFIKLG
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 038298
(259 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2062235 - symbol:NAI1 "AT2G22770" species:3702... 253 1.8e-42 2
TAIR|locus:2062225 - symbol:AT2G22750 "AT2G22750" species... 241 3.5e-38 2
UNIPROTKB|Q75GI1 - symbol:OSJNBa0013A09.16 "Putative tran... 230 4.8e-35 2
TAIR|locus:2062230 - symbol:AT2G22760 "AT2G22760" species... 198 5.0e-35 2
UNIPROTKB|Q84R60 - symbol:OSJNBb0113I20.8 "Putative ammon... 205 4.6e-26 2
UNIPROTKB|Q84R79 - symbol:OSJNBb0113I20.1 "Putative ammon... 271 1.4e-23 1
UNIPROTKB|Q2QLR0 - symbol:LOC_Os12g43620 "Helix-loop-heli... 268 2.9e-23 1
TAIR|locus:2137574 - symbol:AT4G37850 "AT4G37850" species... 234 1.2e-19 1
UNIPROTKB|Q8LSP3 - symbol:OJ1203D03.3 "Helix-loop-helix D... 204 9.3e-16 1
TAIR|locus:2118524 - symbol:TT8 "AT4G09820" species:3702 ... 190 4.2e-14 1
TAIR|locus:2035237 - symbol:AT1G01260 "AT1G01260" species... 178 5.1e-12 2
UNIPROTKB|Q7XPS7 - symbol:OSJNBa0065O17.4 "OSJNBa0065O17.... 164 2.3e-10 2
TAIR|locus:2039094 - symbol:AIB "AT2G46510" species:3702 ... 168 3.7e-10 1
TAIR|locus:2141055 - symbol:MYC4 "AT4G17880" species:3702... 167 5.2e-10 1
UNIPROTKB|Q657A4 - symbol:P0022F12.30 "Regulatory protein... 161 1.2e-09 1
UNIPROTKB|Q336P5 - symbol:Os10g0575000 "Os10g0575000 prot... 163 2.1e-09 1
TAIR|locus:2130619 - symbol:AT4G16430 "AT4G16430" species... 160 2.6e-09 1
TAIR|locus:2172932 - symbol:NIG1 "AT5G46830" species:3702... 152 2.7e-08 1
UNIPROTKB|Q53L62 - symbol:LOC_Os11g15210 "Helix-loop-heli... 151 3.0e-08 1
TAIR|locus:2026629 - symbol:EGL3 "AT1G63650" species:3702... 151 4.7e-08 1
TAIR|locus:2178555 - symbol:MYC3 "AT5G46760" species:3702... 150 6.1e-08 2
TAIR|locus:2142419 - symbol:AT5G10570 "AT5G10570" species... 142 1.6e-07 1
UNIPROTKB|Q948Y2 - symbol:Plw-OSB2 "R-type basic helix-lo... 143 2.6e-07 1
TAIR|locus:2035609 - symbol:MYC2 "AT1G32640" species:3702... 144 3.3e-07 1
UNIPROTKB|Q6ZBI4 - symbol:P0623F08.11 "Phaseolin G-box bi... 136 4.9e-07 1
UNIPROTKB|Q7F7Z2 - symbol:Os01g0159800 "ESTs C26093(C1162... 133 1.1e-06 1
TAIR|locus:2080615 - symbol:bHLH39 "basic helix-loop-heli... 133 1.1e-06 1
TAIR|locus:2134583 - symbol:AT4G00870 "AT4G00870" species... 127 1.7e-06 2
UNIPROTKB|Q7XKP5 - symbol:OSJNBb0013O03.11 "OSJNBb0013O03... 132 2.1e-06 1
TAIR|locus:2123954 - symbol:AT4G29930 "AT4G29930" species... 130 2.6e-06 1
TAIR|locus:504954829 - symbol:GL3 "AT5G41315" species:370... 136 3.1e-06 2
TAIR|locus:2154197 - symbol:SPCH "AT5G53210" species:3702... 108 3.4e-06 2
TAIR|locus:2082400 - symbol:MUTE "AT3G06120" species:3702... 100 4.4e-06 2
TAIR|locus:2141206 - symbol:DYT1 "AT4G21330" species:3702... 123 7.5e-06 1
UNIPROTKB|Q5SMX2 - symbol:P0498B01.25 "Basic helix-loop-h... 129 9.4e-06 1
UNIPROTKB|Q8H8E4 - symbol:OJ1006F06.1 "Putative bHLH tran... 129 1.0e-05 1
UNIPROTKB|Q2R3F6 - symbol:Os11g0523700 "Helix-loop-helix ... 129 1.4e-05 1
TAIR|locus:2080600 - symbol:bHLH38 "basic helix-loop-heli... 123 1.6e-05 1
TAIR|locus:2065086 - symbol:AT2G40200 "AT2G40200" species... 122 2.1e-05 1
TAIR|locus:2164605 - symbol:AT5G56960 "AT5G56960" species... 124 4.3e-05 2
TAIR|locus:2155503 - symbol:ALC "AT5G67110" species:3702 ... 117 4.5e-05 1
UNIPROTKB|Q69IU0 - symbol:P0498F03.15 "Putative MYC-relat... 120 4.9e-05 1
TAIR|locus:2012393 - symbol:AT1G68810 "AT1G68810" species... 120 8.4e-05 1
TAIR|locus:2115080 - symbol:SPT "AT4G36930" species:3702 ... 120 8.6e-05 1
TAIR|locus:2158392 - symbol:BHLH92 "AT5G43650" species:37... 116 0.00010 1
UNIPROTKB|Q948F6 - symbol:OSJNBa0049O12.18 "Putative SPAT... 117 0.00012 1
UNIPROTKB|Q5NAE0 - symbol:P0498A12.33 "Putative BP-5 prot... 121 0.00013 1
UNIPROTKB|Q2QMN2 - symbol:LOC_Os12g40590 "Helix-loop-heli... 115 0.00016 1
TAIR|locus:2039445 - symbol:AMS "AT2G16910" species:3702 ... 119 0.00022 1
UNIPROTKB|Q8GRJ1 - symbol:OJ1343_B12.103 "Transcription f... 117 0.00023 1
UNIPROTKB|Q84LF9 - symbol:RERJ1 "Transcription Factor" sp... 115 0.00023 1
TAIR|locus:2090847 - symbol:ICE1 "AT3G26744" species:3702... 118 0.00023 1
TAIR|locus:2053733 - symbol:PIF4 "AT2G43010" species:3702... 117 0.00024 1
TAIR|locus:2089418 - symbol:AT3G21330 "AT3G21330" species... 116 0.00025 1
UNIPROTKB|Q5SMX4 - symbol:P0498B01.36 "cDNA clone:J033115... 117 0.00025 1
UNIPROTKB|Q8WYA1 - symbol:ARNTL2 "Aryl hydrocarbon recept... 119 0.00025 1
UNIPROTKB|Q58GE3 - symbol:UDT1 "Undeveloped tapetum 1" sp... 112 0.00026 1
TAIR|locus:2126876 - symbol:UNE10 "AT4G00050" species:370... 114 0.00047 1
TAIR|locus:2116977 - symbol:AT4G01460 "AT4G01460" species... 98 0.00054 2
TAIR|locus:2129710 - symbol:bHLH104 "AT4G14410" species:3... 111 0.00054 1
TAIR|locus:2012345 - symbol:PIF3 "AT1G09530" species:3702... 115 0.00055 1
UNIPROTKB|Q336V8 - symbol:Os10g0544200 "Os10g0544200 prot... 113 0.00056 1
TAIR|locus:4010713916 - symbol:AT4G28815 species:3702 "Ar... 111 0.00064 1
UNIPROTKB|Q69Y51 - symbol:P0698A06.26-2 "Putative bHLH tr... 112 0.00080 1
TAIR|locus:2155725 - symbol:bHLH093 "AT5G65640" species:3... 111 0.00083 1
TAIR|locus:2040287 - symbol:BHLH100 "basic helix-loop-hel... 108 0.00085 1
UNIPROTKB|Q5VRS4 - symbol:OSJNBa0015I14.14 "Basic helix-l... 110 0.00088 1
TAIR|locus:2046198 - symbol:FRU "AT2G28160" species:3702 ... 110 0.00089 1
UNIPROTKB|F1PZY3 - symbol:ARNTL2 "Uncharacterized protein... 114 0.00090 1
UNIPROTKB|Q6Z7E7 - symbol:P0020C11.18 "Putative bHLH tran... 113 0.00091 1
UNIPROTKB|Q5KQG3 - symbol:OSJNBb0086G17.12 "Putative unch... 94 0.00093 2
TAIR|locus:2077680 - symbol:PIL6 "AT3G59060" species:3702... 112 0.00094 1
UNIPROTKB|Q8S0C6 - symbol:B1112D09.6 "Uncharacterized pro... 112 0.00097 1
UNIPROTKB|Q7FA23 - symbol:OSJNBa0058K23.6 "Os04g0618600 p... 104 0.0010 1
>TAIR|locus:2062235 [details] [associations]
symbol:NAI1 "AT2G22770" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IMP;TAS]
[GO:0007029 "endoplasmic reticulum organization" evidence=IMP]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AC005617 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000240300 ProtClustDB:CLSN2690866
EMBL:AF488564 EMBL:AK176248 IPI:IPI00531737 PIR:F84616
RefSeq:NP_850031.2 UniGene:At.43434 ProteinModelPortal:Q8S3F1
SMR:Q8S3F1 STRING:Q8S3F1 PRIDE:Q8S3F1 EnsemblPlants:AT2G22770.1
GeneID:816807 KEGG:ath:AT2G22770 TAIR:At2g22770 eggNOG:NOG310015
InParanoid:Q8S3F1 OMA:TDEYLID PhylomeDB:Q8S3F1
Genevestigator:Q8S3F1 Uniprot:Q8S3F1
Length = 320
Score = 253 (94.1 bits), Expect = 1.8e-42, Sum P(2) = 1.8e-42
Identities = 65/165 (39%), Positives = 98/165 (59%)
Query: 12 QYQGNSQSNSTTHGSMPFSGLISFQDTDSLASYYSQMSNPNSEYYCTIKSEDKRASDENL 71
Q + N+ NST+ S P S S T + S+ S + N ++ ++ + D+ +
Sbjct: 55 QMKTNNNMNSTS--SSPSSSSSSGSRTSQVISFGSPDTKTNP-VETSLNFSNQVSMDQKV 111
Query: 72 MAMKTRIVNKPGQGNRVASRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKAS 131
+ + VN G+ R P +EHV+AERKRR+K+N++ IALSA++PG+K+ +KA+
Sbjct: 112 GSKRKDCVNNGGR------REPHLLKEHVLAERKRRQKLNERLIALSALLPGLKKTDKAT 165
Query: 132 VLEGTIKHLKELQERGKKLVEH--TKRKAPESVVSVKRSQQTLPD 174
VLE IKHLK+LQER KKL E +K +S++ VKRSQ L D
Sbjct: 166 VLEDAIKHLKQLQERVKKLEEERVVTKKMDQSIILVKRSQVYLDD 210
Score = 213 (80.0 bits), Expect = 1.8e-42, Sum P(2) = 1.8e-42
Identities = 43/86 (50%), Positives = 64/86 (74%)
Query: 169 QQTLPDIVVRVSDNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDIT 228
+QT+P I RVSD ++LIR+HCEK N G + I+S +EK L V+NS T+PFGN L IT
Sbjct: 236 KQTMPMIEARVSDRDLLIRVHCEK-NKGCMIKILSSLEKFRLEVVNSFTLPFGNSTLVIT 294
Query: 229 VVAQMEVEFCLTVKELVKNLRLALSK 254
++ +M+ +F V+E+VKN+R+AL++
Sbjct: 295 ILTKMDNKFSRPVEEVVKNIRVALAE 320
>TAIR|locus:2062225 [details] [associations]
symbol:AT2G22750 "AT2G22750" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AC005617 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC006340
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AF488562 EMBL:DQ446549
EMBL:DQ653015 IPI:IPI00538506 IPI:IPI00846694 PIR:D84616
RefSeq:NP_001077944.1 RefSeq:NP_179860.2 UniGene:At.39395
ProteinModelPortal:Q1PF17 SMR:Q1PF17 EnsemblPlants:AT2G22750.2
GeneID:816805 KEGG:ath:AT2G22750 TAIR:At2g22750 eggNOG:NOG266714
HOGENOM:HOG000240300 InParanoid:Q8S3F3 OMA:FDISIIA PhylomeDB:Q1PF17
ProtClustDB:CLSN2690865 Genevestigator:Q1PF17 Uniprot:Q1PF17
Length = 305
Score = 241 (89.9 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
Identities = 61/158 (38%), Positives = 91/158 (57%)
Query: 17 SQSNSTTHGSMPFSGLISFQDTDSLASYYSQMSNPNSEYYCTIKSEDKRASDENLMAMKT 76
S SN P S ++SF+ T + ++PN + + K E+ + K
Sbjct: 54 SSSNPPPPKHQPSSRILSFEKT---GLHVMNHNSPNLIF--SPKDEEIGLPEHK----KA 104
Query: 77 RIVNKPGQGNRVASRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGT 136
++ + + + +RS AQ+H++AERKRREK+ Q+F+ALSA+IPG+K+M+KASVL
Sbjct: 105 ELIIRGTKRAQSLTRSQSNAQDHILAERKRREKLTQRFVALSALIPGLKKMDKASVLGDA 164
Query: 137 IKHLKELQERGKKLVEHTKRKAPESVVSVKRSQQTLPD 174
IKH+K LQE K+ E K K ESVV VK+S L +
Sbjct: 165 IKHIKYLQESVKEYEEQKKEKTMESVVLVKKSSLVLDE 202
Score = 184 (69.8 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
Identities = 41/87 (47%), Positives = 56/87 (64%)
Query: 168 SQQTLPDIVVRVSDNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDI 227
S LP+I VRVS +VLI+I CEKQ G + I+ EIEKL L + NS +PFG DI
Sbjct: 219 SSSNLPEIEVRVSGKDVLIKILCEKQK-GNVIKIMGEIEKLGLSITNSNVLPFGP-TFDI 276
Query: 228 TVVAQMEVEFCLTVKELVKNLRLALSK 254
+++AQ F + ++++VKNL LSK
Sbjct: 277 SIIAQKNNNFDMKIEDVVKNLSFGLSK 303
>UNIPROTKB|Q75GI1 [details] [associations]
symbol:OSJNBa0013A09.16 "Putative transcription factor"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0003677 EMBL:DP000009
EMBL:AP008209 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC145380
EMBL:AC135228 EMBL:AK120539 RefSeq:NP_001051131.1 UniGene:Os.7441
EnsemblPlants:LOC_Os03g51580.1 GeneID:4333965 KEGG:osa:4333965
OMA:DSCITEQ Uniprot:Q75GI1
Length = 359
Score = 230 (86.0 bits), Expect = 4.8e-35, Sum P(2) = 4.8e-35
Identities = 46/86 (53%), Positives = 66/86 (76%)
Query: 89 ASRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKELQERGK 148
ASR Q QEH++AERKRREK++Q+FIALS ++PG+K+M+KASVL IK++K+LQ++ K
Sbjct: 172 ASRPASQNQEHILAERKRREKLSQRFIALSKIVPGLKKMDKASVLGDAIKYVKQLQDQVK 231
Query: 149 KLVEHTKRKAPESVVSVKRSQQTLPD 174
L E +R+ E+ V VK+SQ + D
Sbjct: 232 GLEEEARRRPVEAAVLVKKSQLSADD 257
Score = 168 (64.2 bits), Expect = 4.8e-35, Sum P(2) = 4.8e-35
Identities = 33/80 (41%), Positives = 53/80 (66%)
Query: 172 LPDIVVRVSDNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVA 231
LP+I RVS+ VL++IHCE + G + +SE+E + L ++N+ +PF + +LDIT++A
Sbjct: 276 LPEIEARVSERTVLVKIHCENRK-GALITALSEVETIGLTIMNTNVLPFTSSSLDITIMA 334
Query: 232 QMEVEFCLTVKELVKNLRLA 251
F L+VK++VK L A
Sbjct: 335 TAGENFSLSVKDIVKKLNQA 354
>TAIR|locus:2062230 [details] [associations]
symbol:AT2G22760 "AT2G22760" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AC005617 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC006340
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000240300
EMBL:AF488563 EMBL:DQ446550 EMBL:DQ653016 IPI:IPI00530407
PIR:E84616 RefSeq:NP_179861.2 UniGene:At.39393
ProteinModelPortal:Q1PF16 SMR:Q1PF16 IntAct:Q1PF16 PRIDE:Q1PF16
EnsemblPlants:AT2G22760.1 GeneID:816806 KEGG:ath:AT2G22760
TAIR:At2g22760 eggNOG:NOG292366 InParanoid:Q1PF16 OMA:GCMINIL
PhylomeDB:Q1PF16 ProtClustDB:CLSN2690866 Genevestigator:Q1PF16
Uniprot:Q1PF16
Length = 295
Score = 198 (74.8 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 41/84 (48%), Positives = 61/84 (72%)
Query: 170 QTLPDIVVRVSDNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITV 229
Q LP+I ++S N++LIRI CEK G + NI++ IE L + NS +PFG+ LDITV
Sbjct: 212 QALPEIEAKISQNDILIRILCEKSK-GCMINILNTIENFQLRIENSIVLPFGDSTLDITV 270
Query: 230 VAQMEVEFCLTV-KELVKNLRLAL 252
+AQM+ +F +++ K+LV+NLRLA+
Sbjct: 271 LAQMDKDFSMSILKDLVRNLRLAM 294
Score = 197 (74.4 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 38/81 (46%), Positives = 64/81 (79%)
Query: 90 SRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKELQERGKK 149
+RSP+ A+EHV+AERKRREK++++FIALSA++PG+K+ +K ++L+ I +K+LQE+ +
Sbjct: 111 TRSPVLAKEHVLAERKRREKLSEKFIALSALLPGLKKADKVTILDDAISRMKQLQEQLRT 170
Query: 150 LVEHTKR-KAPESVVSVKRSQ 169
L E + + ES++ VK+S+
Sbjct: 171 LKEEKEATRQMESMILVKKSK 191
>UNIPROTKB|Q84R60 [details] [associations]
symbol:OSJNBb0113I20.8 "Putative ammonium transporter"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
HSSP:P22415 EMBL:AC116369 ProteinModelPortal:Q84R60 Gramene:Q84R60
Uniprot:Q84R60
Length = 353
Score = 205 (77.2 bits), Expect = 4.6e-26, Sum P(2) = 4.6e-26
Identities = 41/85 (48%), Positives = 64/85 (75%)
Query: 83 GQGNRVASRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKE 142
G G+ +S +P AQEH+IAERKRREK+NQ+FI LS VIPG+K+M+KA++L ++++KE
Sbjct: 178 GGGSGSSSAAPY-AQEHIIAERKRREKINQRFIELSTVIPGLKKMDKATILSDAVRYVKE 236
Query: 143 LQERGKKLVEHTKRKAPESVVSVKR 167
+QE+ +L +H + ES + +K+
Sbjct: 237 MQEKLSELEQH-QNGGVESAILLKK 260
Score = 111 (44.1 bits), Expect = 4.6e-26, Sum P(2) = 4.6e-26
Identities = 20/65 (30%), Positives = 40/65 (61%)
Query: 168 SQQTLPDIVVRVSDNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDI 227
++ +LP+I ++S NV++RIH E G + +++ +E LHL + ++ +PF I
Sbjct: 288 ARSSLPEIEAKISHGNVMVRIHGENNGKGSLVRLLAAVEGLHLGITHTNVMPFSACTAII 347
Query: 228 TVVAQ 232
T++A+
Sbjct: 348 TIMAK 352
>UNIPROTKB|Q84R79 [details] [associations]
symbol:OSJNBb0113I20.1 "Putative ammonium transporter"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
HSSP:P22415 EMBL:AC116369 ProteinModelPortal:Q84R79 Gramene:Q84R79
Uniprot:Q84R79
Length = 301
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 62/148 (41%), Positives = 96/148 (64%)
Query: 98 EHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKELQERGKKLVEHTKRK 157
EHV+AERKRREK+NQ+F+ LSAVIP +K+M+KA++L +++ELQE+ K L E +
Sbjct: 130 EHVVAERKRREKINQRFMELSAVIPKLKKMDKATILSDAASYIRELQEKLKALEEQAAAR 189
Query: 158 APESVV---SVKRSQQTLP---DIVVRVSDNN--VLIRIHCEKQNIGFISNIVSEIEKLH 209
E+ + S R+ LP +I VR S N V++RIHCE G I I++E+E++H
Sbjct: 190 VTEAAMATPSPARAMNHLPVPPEIEVRCSPTNNVVMVRIHCENGE-GVIVRILAEVEEIH 248
Query: 210 LVVINSRTIPFGNYA--LDITVVAQMEV 235
L +IN+ +PF + + IT+ A+ ++
Sbjct: 249 LRIINANVMPFLDQGATMIITIAAKAKI 276
>UNIPROTKB|Q2QLR0 [details] [associations]
symbol:LOC_Os12g43620 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:DP000011
KEGG:dosa:Os12t0632600-00 Gramene:Q2QLR0 OMA:TNVMPFP Uniprot:Q2QLR0
Length = 338
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 62/163 (38%), Positives = 102/163 (62%)
Query: 83 GQGNRVASRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKE 142
G G+ ++ +P Q+H+IAER+RREK+NQ+FI LS VIPG+K+M+KA++L +K++KE
Sbjct: 152 GGGSSSSAAAPGYVQDHIIAERRRREKINQRFIELSTVIPGLKKMDKATILGDAVKYVKE 211
Query: 143 LQERGKKLVEHTKRKAPESVVSVKRS---QQT----------LPDIVVRVSDNNVLIRIH 189
LQE+ K L E P ++V K S +Q+ +P+I VRV + +VL+R+
Sbjct: 212 LQEKVKTLEEEDGGGRPAAMVVRKSSCSGRQSAAGDGDGEGRVPEIEVRVWERSVLVRVQ 271
Query: 190 CEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQ 232
C G + ++SE+E+L L + ++ +PF + IT+ A+
Sbjct: 272 CGNSR-GLLVRLLSEVEELRLGITHTSVMPFPASTVIITITAK 313
>TAIR|locus:2137574 [details] [associations]
symbol:AT4G37850 "AT4G37850" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL035709
EMBL:AL161592 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000240300
ProtClustDB:CLSN2690865 EMBL:AF488567 IPI:IPI00544527 PIR:T06032
RefSeq:NP_195498.3 UniGene:At.31223 ProteinModelPortal:Q9T072
SMR:Q9T072 EnsemblPlants:AT4G37850.1 GeneID:829941
KEGG:ath:AT4G37850 TAIR:At4g37850 eggNOG:NOG262524
InParanoid:Q8S3F0 PhylomeDB:Q9T072 Genevestigator:Q9T072
Uniprot:Q9T072
Length = 328
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 56/117 (47%), Positives = 75/117 (64%)
Query: 90 SRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKELQERGKK 149
SR+ AQ+H+IAERKRREK+ Q+F+ALSA++PG+K+M+KASVL +KH+K LQER +
Sbjct: 144 SRNQSNAQDHIIAERKRREKLTQRFVALSALVPGLKKMDKASVLGDALKHIKYLQERVGE 203
Query: 150 LVEHTKRKAPESVVSVKRSQQTLPDIVVRVSDNNVLIRIHCEKQNIGFISNIVSEIE 206
L E K + ES+V VK+S+ L DNN CE GF + EIE
Sbjct: 204 LEEQKKERRLESMVLVKKSKLIL-------DDNNQSFSSSCED---GFSDLDLPEIE 250
Score = 211 (79.3 bits), Expect = 4.0e-17, P = 4.0e-17
Identities = 45/89 (50%), Positives = 65/89 (73%)
Query: 168 SQQTLPDIVVRVSDNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDI 227
S LP+I VR SD +VLI+I CEKQ G ++ I++EIEKLH+++ NS + FG LDI
Sbjct: 242 SDLDLPEIEVRFSDEDVLIKILCEKQK-GHLAKIMAEIEKLHILITNSSVLNFGP-TLDI 299
Query: 228 TVVAQMEVEFCLTVKELVKNLRLALSKFI 256
T++A+ E +F +T+ ++VK+LR ALS FI
Sbjct: 300 TIIAKKESDFDMTLMDVVKSLRSALSNFI 328
>UNIPROTKB|Q8LSP3 [details] [associations]
symbol:OJ1203D03.3 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
EMBL:DP000009 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC099732
EnsemblPlants:LOC_Os03g12760.1 KEGG:dosa:Os03t0229100-00
HOGENOM:HOG000239880 OMA:DSCLNIT Uniprot:Q8LSP3
Length = 451
Score = 204 (76.9 bits), Expect = 9.3e-16, P = 9.3e-16
Identities = 40/85 (47%), Positives = 60/85 (70%)
Query: 90 SRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKELQERGKK 149
SR P AQEHVIAERKRREK+ QQF+AL+ ++PG+K+ +K S+L TI ++K+L+E+ K
Sbjct: 279 SRPPANAQEHVIAERKRREKLQQQFVALATIVPGLKKTDKISLLGSTIDYVKQLEEKVKA 338
Query: 150 LVEHTKRKAPESVVSVKRSQQTLPD 174
L E ++R A + + + T+ D
Sbjct: 339 LEEGSRRTAEPTTAFESKCRITVDD 363
Score = 117 (46.2 bits), Expect = 0.00026, P = 0.00026
Identities = 39/147 (26%), Positives = 66/147 (44%)
Query: 91 RSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMN-KASVLEGTIKHLKE----LQE 145
R LQ Q +A K + L + I +KQ+ K LE + E +
Sbjct: 296 REKLQQQFVALATIVPGLKKTDKISLLGSTIDYVKQLEEKVKALEEGSRRTAEPTTAFES 355
Query: 146 RGKKLVEHTKRKAPESVVSVKRSQQTLPDIVVRVSDNNVLIRIHCEKQNIGFISNIVSEI 205
+ + V+ + S S + P + + N VL++I C K+ G + I+SE+
Sbjct: 356 KCRITVDDDDGGSASSGTDDGSSSSSSPTVEASIHGNTVLLKICC-KERRGLLVMILSEL 414
Query: 206 EKLHLVVINSRTIPFGNYALDITVVAQ 232
EK L +IN+ +PF + L+IT+ A+
Sbjct: 415 EKQGLSIINTSVVPFTDSCLNITITAK 441
>TAIR|locus:2118524 [details] [associations]
symbol:TT8 "AT4G09820" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009962 "regulation of flavonoid
biosynthetic process" evidence=TAS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:2000029 "regulation
of proanthocyanidin biosynthetic process" evidence=IEP] [GO:0010026
"trichome differentiation" evidence=IMP] [GO:0009718
"anthocyanin-containing compound biosynthetic process"
evidence=RCA] [GO:0009744 "response to sucrose stimulus"
evidence=RCA] [GO:0010224 "response to UV-B" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
InterPro:IPR025610 Pfam:PF14215 EMBL:AL161516 GO:GO:0009813
EMBL:AL049482 HOGENOM:HOG000237985 GO:GO:0010026 GO:GO:2000029
EMBL:AJ277509 EMBL:DQ446813 EMBL:DQ653187 IPI:IPI00530243
RefSeq:NP_192720.2 UniGene:At.10175 ProteinModelPortal:Q9FT81
SMR:Q9FT81 IntAct:Q9FT81 STRING:Q9FT81 PaxDb:Q9FT81 PRIDE:Q9FT81
EnsemblPlants:AT4G09820.1 GeneID:826571 KEGG:ath:AT4G09820
TAIR:At4g09820 eggNOG:NOG249918 InParanoid:Q9FT81 OMA:NEVDSKT
PhylomeDB:Q9FT81 ProtClustDB:CLSN2681600 Genevestigator:Q9FT81
Uniprot:Q9FT81
Length = 518
Score = 190 (71.9 bits), Expect = 4.2e-14, P = 4.2e-14
Identities = 59/210 (28%), Positives = 109/210 (51%)
Query: 1 MDVDQDSTFIHQYQGN-SQSNSTTHGSMPFSGLISFQDTDSLASYYSQMSNPNSEYYCTI 59
+D D + + GN SQ+ +T S P S L+S D+ S +SY Q S
Sbjct: 268 LDTHMDMMNLMEEGGNYSQTVTTLLMSHPTS-LLS--DSVSTSSYI-QSSFATWRVENGK 323
Query: 60 KSEDKRASDENLMAMKTRIVNKPG-QGNRVASRSPLQAQEHVIAERKRREKMNQQFIALS 118
+ + + + + +K I P N R P + HV+AER+RREK+N++FI L
Sbjct: 324 EHQQVKTAPSSQWVLKQMIFRVPFLHDNTKDKRLPREDLSHVVAERRRREKLNEKFITLR 383
Query: 119 AVIPGIKQMNKASVLEGTIKHLKELQERGKKLVEHTKRKAPESVVSVKRSQQTLPDIVVR 178
+++P + +M+K S+L TI ++ L++R +L + + + KR +T ++ V
Sbjct: 384 SMVPFVTKMDKVSILGDTIAYVNHLRKRVHELENTHHEQQHKRTRTCKR--KTSEEVEVS 441
Query: 179 VSDNNVLIRIHCEKQNIGFISNIVSEIEKL 208
+ +N+VL+ + CE ++ G + +I+ + +L
Sbjct: 442 IIENDVLLEMRCEYRD-GLLLDILQVLHEL 470
>TAIR|locus:2035237 [details] [associations]
symbol:AT1G01260 "AT1G01260" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009694 "jasmonic acid metabolic process" evidence=RCA]
[GO:0009753 "response to jasmonic acid stimulus" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
eggNOG:NOG313259 HOGENOM:HOG000238207 InterPro:IPR025610
Pfam:PF14215 EMBL:AF251698 EMBL:AC023628 EMBL:AF488559
EMBL:AY079012 EMBL:AY120752 EMBL:BT004517 IPI:IPI00539052
PIR:H86142 RefSeq:NP_001077440.1 RefSeq:NP_001184883.1
RefSeq:NP_171634.1 UniGene:At.28312 ProteinModelPortal:Q9LNJ5
SMR:Q9LNJ5 IntAct:Q9LNJ5 EnsemblPlants:AT1G01260.1
EnsemblPlants:AT1G01260.2 EnsemblPlants:AT1G01260.3 GeneID:839545
KEGG:ath:AT1G01260 TAIR:At1g01260 InParanoid:Q9LNJ5 OMA:FPANYCY
PhylomeDB:Q9LNJ5 ProtClustDB:CLSN2682849 Genevestigator:Q9LNJ5
Uniprot:Q9LNJ5
Length = 590
Score = 178 (67.7 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 54/169 (31%), Positives = 85/169 (50%)
Query: 80 NKPGQGNRVASRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKH 139
N+P + R + +A HV AER+RREK+NQ+F AL +V+P I +M+KAS+L + +
Sbjct: 415 NRPRKRGRRPANGRAEALNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSY 474
Query: 140 LKELQERGKKLVEHTKRKAPESVVSVKRSQQTLPDIVVRVSDNNVLIRIHCEKQNIGFIS 199
+ EL + K + +R S + DI V+ S +V +RI+C ++ S
Sbjct: 475 INELHAKLKVMEAERERLGYSSNPPISLDS----DINVQTSGEDVTVRINCPLESHP-AS 529
Query: 200 NIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNL 248
I E+ + VINS + L VV E LT ++L+ L
Sbjct: 530 RIFHAFEESKVEVINSNLEVSQDTVLHTFVVKSEE----LTKEKLISAL 574
Score = 39 (18.8 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 67 SDENLMAMKTRIVNKPGQGN 86
SDENL + +V +P N
Sbjct: 44 SDENLQNKLSDLVERPNASN 63
>UNIPROTKB|Q7XPS7 [details] [associations]
symbol:OSJNBa0065O17.4 "OSJNBa0065O17.4 protein"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
InterPro:IPR025610 Pfam:PF14215 EMBL:AL606682
ProteinModelPortal:Q7XPS7 Gramene:Q7XPS7 Uniprot:Q7XPS7
Length = 567
Score = 164 (62.8 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 31/68 (45%), Positives = 50/68 (73%)
Query: 83 GQGNRVASRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKE 142
G+G+R A + HVI+ER+RREK+N+ F+ L +++P I +++KAS+LE TI +LK
Sbjct: 377 GRGSRAALTQESGIKNHVISERRRREKLNEMFLILKSIVPSIHKVDKASILEETIAYLKV 436
Query: 143 LQERGKKL 150
L++R K+L
Sbjct: 437 LEKRVKEL 444
Score = 43 (20.2 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 177 VRVSDNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSR-TIPFGNYALDI 227
V V+D VL+ + C + + ++ + I+ L L V++ + + P G L I
Sbjct: 492 VTVTDKVVLLEVQCRWKEL-VMTRVFDAIKSLCLDVLSVQASAPDGLLGLKI 542
>TAIR|locus:2039094 [details] [associations]
symbol:AIB "AT2G46510" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0009611 "response to wounding" evidence=IEP;RCA]
[GO:0009737 "response to abscisic acid stimulus" evidence=RCA;IMP]
[GO:0006612 "protein targeting to membrane" evidence=RCA]
[GO:0007165 "signal transduction" evidence=RCA] [GO:0009414
"response to water deprivation" evidence=RCA] [GO:0009620 "response
to fungus" evidence=RCA] [GO:0009695 "jasmonic acid biosynthetic
process" evidence=RCA] [GO:0009723 "response to ethylene stimulus"
evidence=RCA] [GO:0009733 "response to auxin stimulus"
evidence=RCA] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=RCA] [GO:0009753 "response to jasmonic acid
stimulus" evidence=RCA] [GO:0009863 "salicylic acid mediated
signaling pathway" evidence=RCA] [GO:0009867 "jasmonic acid
mediated signaling pathway" evidence=RCA] [GO:0010363 "regulation
of plant-type hypersensitive response" evidence=RCA] [GO:0042538
"hyperosmotic salinity response" evidence=RCA] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0009737
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009611
GO:GO:0009738 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
EMBL:AC006526 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC006418
EMBL:AY094399 IPI:IPI00535471 PIR:G84903 RefSeq:NP_566078.1
UniGene:At.19872 ProteinModelPortal:Q9ZPY8 SMR:Q9ZPY8 PaxDb:Q9ZPY8
PRIDE:Q9ZPY8 EnsemblPlants:AT2G46510.1 GeneID:819262
KEGG:ath:AT2G46510 TAIR:At2g46510 eggNOG:NOG313259
HOGENOM:HOG000238207 InParanoid:Q9ZPY8 OMA:KIMEDER PhylomeDB:Q9ZPY8
ProtClustDB:CLSN2917347 Genevestigator:Q9ZPY8 InterPro:IPR025610
Pfam:PF14215 Uniprot:Q9ZPY8
Length = 566
Score = 168 (64.2 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 41/110 (37%), Positives = 67/110 (60%)
Query: 87 RVASRSPLQAQE----HVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKE 142
R R P +E HV AER+RREK+NQ+F AL +V+P I +M+KAS+L I ++KE
Sbjct: 380 RKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYIKE 439
Query: 143 LQERGKKLVEH---TKRKAPES-VVSVKRSQQTLPDIVVRVSDNNVLIRI 188
LQE+ K + + T + ES ++V+ S P++ ++ + V++R+
Sbjct: 440 LQEKVKIMEDERVGTDKSLSESNTITVEES----PEVDIQAMNEEVVVRV 485
>TAIR|locus:2141055 [details] [associations]
symbol:MYC4 "AT4G17880" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009718 "anthocyanin-containing compound biosynthetic process"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0006952 "defense response"
evidence=IMP] [GO:0043425 "bHLH transcription factor binding"
evidence=IPI] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0045893 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006952 GO:GO:0003677 GO:GO:0009718
GO:GO:0003700 GO:GO:0006351 EMBL:AL161547 EMBL:AL021889
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000238207
InterPro:IPR025610 Pfam:PF14215 eggNOG:NOG295658
ProtClustDB:CLSN2686023 EMBL:AF251689 EMBL:AK221507 IPI:IPI00540927
PIR:T05074 RefSeq:NP_193522.1 UniGene:At.28316
ProteinModelPortal:O49687 SMR:O49687 EnsemblPlants:AT4G17880.1
GeneID:827511 KEGG:ath:AT4G17880 TAIR:At4g17880 InParanoid:O49687
OMA:SCERARQ PhylomeDB:O49687 Genevestigator:O49687 Uniprot:O49687
Length = 589
Score = 167 (63.8 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 56/193 (29%), Positives = 98/193 (50%)
Query: 30 SGLISFQDTDSLASYYSQMSNPNSEYYCTIKSE---DKRASDENLMAMK----TRIVNKP 82
+G+ + Q+ DS S +SN N E + S D SD K R+V +P
Sbjct: 338 NGIENGQEEDSSNKKRSPVSN-NEEGMLSFTSVLPCDSNHSDLEASVAKEAESNRVVVEP 396
Query: 83 GQGNRVASRSPLQAQE----HVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIK 138
+ R R P +E HV AER+RREK+NQ+F +L AV+P + +M+KAS+L I
Sbjct: 397 EKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAIS 456
Query: 139 HLKELQERGKKLVEHTKRKAPESVVSVKR----SQQTLPDIVVRVSDNNVLIRIHCEKQN 194
++ EL+ + +K E K + + + + + ++ ++ D +++VLI + + +
Sbjct: 457 YISELKSKLQK-AESDKEELQKQIDVMNKEAGNAKSSVKDRKCLNQESSVLIEMEVDVKI 515
Query: 195 IGFISNIVSEIEK 207
IG+ + I + K
Sbjct: 516 IGWDAMIRIQCSK 528
>UNIPROTKB|Q657A4 [details] [associations]
symbol:P0022F12.30 "Regulatory protein B-Peru-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP002908 EMBL:AP003310 EnsemblPlants:LOC_Os01g39580.1
Uniprot:Q657A4
Length = 370
Score = 161 (61.7 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 49/147 (33%), Positives = 80/147 (54%)
Query: 32 LISFQDTDSLASYYSQMSN----PNSEYYCTIKSE-DKRA--SDENLMAMKTRIVNKPGQ 84
LI D DS +S+ + + P S + ++E DK A E + ++V G
Sbjct: 116 LIRNWDNDSSSSWIELLDHAIVSPASCFVPWKRTELDKEAVAGGEAAQRLLKKVVGGGGA 175
Query: 85 G-NRVASRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKEL 143
NR A ++ HV++ER+RREK+N+ F+ L +++P I +++KAS+L TI +LKEL
Sbjct: 176 WMNRAAGSCSIK--NHVMSERRRREKLNEMFLILKSLVPSIDKVDKASILSETIAYLKEL 233
Query: 144 QER------GKKLVEHTKRK-APESVV 163
+ R GKK+ KRK E+++
Sbjct: 234 ERRVQELESGKKVSRPAKRKPCSETII 260
>UNIPROTKB|Q336P5 [details] [associations]
symbol:Os10g0575000 "Os10g0575000 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:DP000086 EMBL:AP008216 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238207 InterPro:IPR025610
Pfam:PF14215 eggNOG:NOG295658 KO:K13422 RefSeq:NP_001065478.1
UniGene:Os.100484 STRING:Q336P5 GeneID:4349484 KEGG:osa:4349484
ProtClustDB:CLSN2698296 Uniprot:Q336P5
Length = 699
Score = 163 (62.4 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 44/158 (27%), Positives = 79/158 (50%)
Query: 19 SNSTTHGSMPFS-GLISFQDTDSLASYYSQMSNPNSEY-YCTIKSEDKRASDENLMAMKT 76
SN+ H + + G++SF + + SE + +++ + ++A
Sbjct: 443 SNTNNHPAATANEGMLSFSSAPTTRPSTGTGAPAKSESDHSDLEASVREVESSRVVAPPP 502
Query: 77 RIVNKPGQGNRVASRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGT 136
+P + R + + HV AER+RREK+NQ+F AL AV+P + +M+KAS+L
Sbjct: 503 EAEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDA 562
Query: 137 IKHLKELQERGKKLVEHTKRKAPESVV-SVKRSQQTLP 173
I ++ EL RGK T ++ +S + S+K+ + P
Sbjct: 563 ISYINEL--RGKLTALETDKETLQSQMESLKKERDARP 598
Score = 139 (54.0 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 42/173 (24%), Positives = 84/173 (48%)
Query: 59 IKSEDKRASDENLMAMKTRIVNKPGQGNRVASRSPLQAQEHVIAERKRREKMNQQFIALS 118
+++ + ++A +P + R + + HV AER+RREK+NQ+F AL
Sbjct: 485 LEASVREVESSRVVAPPPEAEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALR 544
Query: 119 AVIPGIKQMNKASVLEGTIKHLKELQERGKKLV--EHTKRKAPESVVSVKRSQQTLP--- 173
AV+P + +M+KAS+L I ++ EL+ + L + T + ES+ + ++ P
Sbjct: 545 AVVPNVSKMDKASLLGDAISYINELRGKLTALETDKETLQSQMESLKKERDARPPAPSGG 604
Query: 174 -----------DIVVRVSDNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINS 215
+I ++ +IR+ C K+N + +++ + +L L V ++
Sbjct: 605 GGDGGARCHAVEIEAKILGLEAMIRVQCHKRNHP-AARLMTALRELDLDVYHA 656
>TAIR|locus:2130619 [details] [associations]
symbol:AT4G16430 "AT4G16430" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:Z97341 EMBL:AL161544
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000238207
InterPro:IPR025610 Pfam:PF14215 EMBL:AF251688 EMBL:AF428368
EMBL:AY057626 EMBL:BT002301 IPI:IPI00546344 PIR:A71431
RefSeq:NP_193376.1 UniGene:At.33082 UniGene:At.4413
ProteinModelPortal:O23487 SMR:O23487 STRING:O23487 PaxDb:O23487
PRIDE:O23487 EnsemblPlants:AT4G16430.1 GeneID:827337
KEGG:ath:AT4G16430 TAIR:At4g16430 eggNOG:NOG246663
InParanoid:O23487 OMA:RSMSINF PhylomeDB:O23487
ProtClustDB:CLSN2685658 Genevestigator:O23487 Uniprot:O23487
Length = 467
Score = 160 (61.4 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 52/173 (30%), Positives = 91/173 (52%)
Query: 25 GSMPFSGLISFQ-----DTD-SLASYYSQMSNPNSEYYCTIKSEDKRASDENLMAMKTRI 78
G+ P S I+F DT SL SY Q +++ Y ++ DE L +
Sbjct: 249 GAKPRSMSINFSPKTEDDTGFSLESYEVQAIGGSNQVYGY-----EQGKDETLYLTDEQ- 302
Query: 79 VNKPGQGNRVASRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIK 138
KP + R + +A HV AER+RREK+NQ+F AL AV+P I +M+KAS+L I
Sbjct: 303 --KPRKRGRKPANGREEALNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLADAIT 360
Query: 139 HLKELQERGKKLVEHTKRKAPESVVSVKRSQQTLP-DIVVRVSDNNVLIRIHC 190
++ ++Q++ + V T+++ ++ + S Q P ++ + ++ ++R+ C
Sbjct: 361 YITDMQKKIR--VYETEKQ----IMKRRESNQITPAEVDYQQRHDDAVVRLSC 407
>TAIR|locus:2172932 [details] [associations]
symbol:NIG1 "AT5G46830" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;TAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0005509 "calcium ion binding" evidence=IDA]
[GO:0009651 "response to salt stress" evidence=IEP] [GO:0042538
"hyperosmotic salinity response" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0005509
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000238207 InterPro:IPR025610 Pfam:PF14215 GO:GO:0042538
EMBL:AF252636 EMBL:AB022221 IPI:IPI00544679 RefSeq:NP_199495.1
UniGene:At.28311 ProteinModelPortal:Q9LUK7 SMR:Q9LUK7
EnsemblPlants:AT5G46830.1 GeneID:834727 KEGG:ath:AT5G46830
TAIR:At5g46830 eggNOG:NOG258937 InParanoid:Q9LUK7 OMA:HVEAERM
PhylomeDB:Q9LUK7 ProtClustDB:CLSN2914881 ArrayExpress:Q9LUK7
Genevestigator:Q9LUK7 Uniprot:Q9LUK7
Length = 511
Score = 152 (58.6 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 62/254 (24%), Positives = 118/254 (46%)
Query: 11 HQYQGNSQSNSTTHGSMPFSGLISFQDTDSLASYYSQMSNPNSEYYCTIKSEDKRASDEN 70
++Y N ++S+T P ++SF + S+ ++ NPN+ Y I++ A+
Sbjct: 267 NRYNLNFSTSSSTLARAPCGDVLSFGENVK-QSFENR--NPNT-YSDQIQNVVPHAT--- 319
Query: 71 LMAMKTRIVNKPGQGNRVASRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKA 130
+M K + K G+ PL HV AER RREK+N +F AL AV+P + +M+K
Sbjct: 320 VMLEKKK-GKKRGRKPAHGRDKPLN---HVEAERMRREKLNHRFYALRAVVPNVSKMDKT 375
Query: 131 SVLEGTIKHLKELQERGK--KLVEHT-------------KRKAPESVVSVKRSQQTLPDI 175
S+LE + ++ EL+ + + +L +H +R A SV + + I
Sbjct: 376 SLLEDAVCYINELKSKAENVELEKHAIEIQFNELKEIAGQRNAIPSVCKYEEKASEMMKI 435
Query: 176 VVRVSDNN-VLIRIHCEKQN------IGFISNIVSEIEKLHLVVINSRTIPFGNYALDIT 228
V++ +++ ++R+ K + + + ++ E+ + V+N I N + +
Sbjct: 436 EVKIMESDDAMVRVESRKDHHPGARLMNALMDLELEVNHASISVMNDLMIQQANVKMGLR 495
Query: 229 VVAQMEVEFCLTVK 242
+ Q E+ L K
Sbjct: 496 IYKQEELRDLLMSK 509
>UNIPROTKB|Q53L62 [details] [associations]
symbol:LOC_Os11g15210 "Helix-loop-helix DNA-binding domain,
putative" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
EMBL:DP000010 Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR025610
Pfam:PF14215 EMBL:AC145364 EnsemblPlants:LOC_Os11g15210.1
KEGG:dosa:Os11t0258700-00 Uniprot:Q53L62
Length = 458
Score = 151 (58.2 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 30/88 (34%), Positives = 56/88 (63%)
Query: 80 NKPGQGNRVASRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKH 139
N G + + + HV++ER+RREK+ + F+ L +V+P I +++KAS+L TI +
Sbjct: 226 NADGSAATMTTDQGSSIKNHVMSERRRREKLKEMFLILKSVVPSIHKVDKASILAETIAY 285
Query: 140 LKELQERGKKLVEHTKRKAPESVVSVKR 167
LKEL++R ++L E + + +P + + +R
Sbjct: 286 LKELEKRVEEL-ESSSQPSPRPMETTRR 312
>TAIR|locus:2026629 [details] [associations]
symbol:EGL3 "AT1G63650" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009957 "epidermal
cell fate specification" evidence=RCA;IMP] [GO:0001708 "cell fate
specification" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009913 "epidermal cell
differentiation" evidence=RCA] [GO:0009965 "leaf morphogenesis"
evidence=RCA] [GO:0016570 "histone modification" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
InterPro:IPR025610 Pfam:PF14215 EMBL:AF251687 EMBL:AF013465
EMBL:AF027732 EMBL:AC011622 IPI:IPI00545374 PIR:D96661
RefSeq:NP_001185302.1 RefSeq:NP_176552.1 RefSeq:NP_974080.1
UniGene:At.25024 ProteinModelPortal:Q9CAD0 SMR:Q9CAD0 IntAct:Q9CAD0
STRING:Q9CAD0 PRIDE:Q9CAD0 EnsemblPlants:AT1G63650.1
EnsemblPlants:AT1G63650.2 EnsemblPlants:AT1G63650.3 GeneID:842669
KEGG:ath:AT1G63650 GeneFarm:1894 TAIR:At1g63650 eggNOG:NOG320411
HOGENOM:HOG000237985 InParanoid:Q9CAD0 OMA:ERASANC PhylomeDB:Q9CAD0
ProtClustDB:CLSN2682588 Genevestigator:Q9CAD0 GermOnline:AT1G63650
GO:GO:0009957 Uniprot:Q9CAD0
Length = 596
Score = 151 (58.2 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 42/168 (25%), Positives = 86/168 (51%)
Query: 14 QGNSQSNSTT-HGSMPFSGLIS--FQDTDSL--ASYYSQMSNPNSEYYCTIKSEDKRASD 68
Q QSN + + G+IS F+ T L + +S S K +
Sbjct: 314 QIQEQSNHVNMDDDVHYQGVISTIFKTTHQLILGPQFQNFDKRSSFTRWKRSSSVKTLGE 373
Query: 69 ENLMAMKTRIVNKP--GQGNRVASRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQ 126
++ +K + P + + +P + H ++E+KRREK+N++F+ L ++IP I +
Sbjct: 374 KSQKMIKKILFEVPLMNKKEELLPDTPEETGNHALSEKKRREKLNERFMTLRSIIPSISK 433
Query: 127 MNKASVLEGTIKHLKELQERGKKLVEHTKRKAPESVVSVKRSQQTLPD 174
++K S+L+ TI++L++LQ+R ++L + R++ ++ + ++ PD
Sbjct: 434 IDKVSILDDTIEYLQDLQKRVQEL--ESCRESADTETRITMMKRKKPD 479
>TAIR|locus:2178555 [details] [associations]
symbol:MYC3 "AT5G46760" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009718
"anthocyanin-containing compound biosynthetic process"
evidence=IMP] [GO:0009753 "response to jasmonic acid stimulus"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0006952 "defense response"
evidence=IMP] [GO:0043425 "bHLH transcription factor binding"
evidence=IPI] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0045893 GO:GO:0006952 GO:GO:0009753 GO:GO:0003677
GO:GO:0009718 GO:GO:0003700 GO:GO:0006351 EMBL:AB016882
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000238207
InterPro:IPR025610 Pfam:PF14215 EMBL:AF251690 IPI:IPI00533290
RefSeq:NP_199488.1 UniGene:At.28315 ProteinModelPortal:Q9FIP9
SMR:Q9FIP9 DIP:DIP-58585N PaxDb:Q9FIP9 PRIDE:Q9FIP9
EnsemblPlants:AT5G46760.1 GeneID:834719 KEGG:ath:AT5G46760
TAIR:At5g46760 eggNOG:NOG295658 InParanoid:Q9FIP9 OMA:TASSIEM
PhylomeDB:Q9FIP9 ProtClustDB:CLSN2686023 Genevestigator:Q9FIP9
Uniprot:Q9FIP9
Length = 592
Score = 150 (57.9 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 50/151 (33%), Positives = 76/151 (50%)
Query: 3 VDQDSTFIHQYQGNSQSNSTTHGSMPFSGLISFQDTDSLASYYSQMSNPNSEYYCTIKS- 61
V++D TF G +SN T + F G S + S+ S S + ++S
Sbjct: 321 VEKDLTF---QGGLLKSNET----LSFCGNESSKKRTSV-SKGSNNDEGMLSFSTVVRSA 372
Query: 62 -EDKRASDENLMAMKTRIVNKPGQGN-RVASRSPLQAQE----HVIAERKRREKMNQQFI 115
D SD +K IV +P + R R P +E HV AER+RREK+NQ+F
Sbjct: 373 ANDSDHSDLEASVVKEAIVVEPPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFY 432
Query: 116 ALSAVIPGIKQMNKASVLEGTIKHLKELQER 146
+L AV+P + +M+KAS+L I ++ EL+ +
Sbjct: 433 SLRAVVPNVSKMDKASLLGDAISYINELKSK 463
Score = 38 (18.4 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 174 DIVVRVSDNNVLIRIHCEKQN 194
+I V++ +V+IR+ C K++
Sbjct: 513 EIDVKIIGWDVMIRVQCGKKD 533
>TAIR|locus:2142419 [details] [associations]
symbol:AT5G10570 "AT5G10570" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AL353995 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AF488594 IPI:IPI00529696 PIR:T49982
RefSeq:NP_196619.1 UniGene:At.32362 ProteinModelPortal:Q9LXA9
SMR:Q9LXA9 EnsemblPlants:AT5G10570.1 GeneID:830922
KEGG:ath:AT5G10570 TAIR:At5g10570 eggNOG:NOG310833
HOGENOM:HOG000029066 InParanoid:Q9LXA9 OMA:SSAFDYP PhylomeDB:Q9LXA9
ProtClustDB:CLSN2914918 Genevestigator:Q9LXA9 Uniprot:Q9LXA9
Length = 315
Score = 142 (55.0 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 51/243 (20%), Positives = 109/243 (44%)
Query: 3 VDQDSTFIHQYQGNSQSNSTTHGSMPFSGLISFQDTDSLASYYSQMSNPNSEYYCTIKSE 62
+ Q +HQ Q +S + S P S + + + +S S P + +
Sbjct: 63 ISQPPPLLHQ---PPQPSSPLYDSPPLSSAFDYPFLEDII--HSSYSPPP----LILPAS 113
Query: 63 DKRASDENLMAMKTRIVNKPGQGNRVASRSPLQAQ--EHVIAERKRREKMNQQFIALSAV 120
+ ++ + + +++ G+ N+ S L+ Q ++++AER+RR+++N + L ++
Sbjct: 114 QENTNNYSPLMEESKSFISIGETNKKRSNKKLEGQPSKNLMAERRRRKRLNDRLSLLRSI 173
Query: 121 IPGIKQMNKASVLEGTIKHLKELQERGKKLVEHTKRKAPESVVSVKRSQQTLP--DIVVR 178
+P I +M++ S+L I ++KEL ++ KL E + S +S + +++ +
Sbjct: 174 VPKITKMDRTSILGDAIDYMKELLDKINKLQEDEQELGSNSHLSTLITNESMVRNSLKFE 233
Query: 179 VSDNNVLIRIH-CEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEF 237
V V I C G + + VS +E L L + F +++L + E +
Sbjct: 234 VDQREVNTHIDICCPTKPGLVVSTVSTLETLGLEIEQCVISCFSDFSLQASCFEVGEQRY 293
Query: 238 CLT 240
+T
Sbjct: 294 MVT 296
>UNIPROTKB|Q948Y2 [details] [associations]
symbol:Plw-OSB2 "R-type basic helix-loop-helix protein"
species:4530 "Oryza sativa" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR025610
Pfam:PF14215 HOGENOM:HOG000237985 EMBL:AB021080
ProteinModelPortal:Q948Y2 Gramene:Q948Y2 Genevestigator:Q948Y2
Uniprot:Q948Y2
Length = 451
Score = 143 (55.4 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 29/79 (36%), Positives = 55/79 (69%)
Query: 80 NKPGQGNRVASRSP-LQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIK 138
N +G+ + +P + HV++ER+RREK+N+ F+ L +++P +++++KAS+L TI
Sbjct: 359 NIDDRGSVAITTTPGSNIKSHVMSERRRREKLNEMFLILKSLLPSVRKVDKASILAETIT 418
Query: 139 HLKELQERGKKLVEHTKRK 157
+LK L++R K+L E + R+
Sbjct: 419 YLKVLEKRVKEL-ESSSRE 436
>TAIR|locus:2035609 [details] [associations]
symbol:MYC2 "AT1G32640" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009867 "jasmonic acid mediated
signaling pathway" evidence=RCA;IMP] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0009963 "positive regulation of flavonoid biosynthetic process"
evidence=IEP;RCA] [GO:0043619 "regulation of transcription from RNA
polymerase II promoter in response to oxidative stress"
evidence=IMP] [GO:0051090 "regulation of sequence-specific DNA
binding transcription factor activity" evidence=IMP] [GO:2000068
"regulation of defense response to insect" evidence=IMP]
[GO:0009611 "response to wounding" evidence=IEP;RCA;TAS]
[GO:0010200 "response to chitin" evidence=IEP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0009753 "response to jasmonic acid
stimulus" evidence=RCA;IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009620 "response to
fungus" evidence=RCA] [GO:0009694 "jasmonic acid metabolic process"
evidence=RCA] [GO:0009695 "jasmonic acid biosynthetic process"
evidence=RCA] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=RCA] [GO:0009863 "salicylic acid mediated
signaling pathway" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA] [GO:0043069
"negative regulation of programmed cell death" evidence=RCA]
[GO:0009269 "response to desiccation" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0005634
GO:GO:0045893 GO:GO:0009753 GO:GO:0009611 GO:GO:0009738
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0010200
EMBL:AC017118 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000238207 InterPro:IPR025610 Pfam:PF14215 GO:GO:0009269
GO:GO:0043619 GO:GO:0051090 eggNOG:NOG295658 GO:GO:0009963
EMBL:X99548 EMBL:AB000875 EMBL:AJ843256 EMBL:AY037203 EMBL:BT003042
EMBL:AF251691 IPI:IPI00543978 PIR:T52293 RefSeq:NP_174541.1
UniGene:At.22648 ProteinModelPortal:Q39204 SMR:Q39204 IntAct:Q39204
STRING:Q39204 PRIDE:Q39204 EnsemblPlants:AT1G32640.1 GeneID:840158
KEGG:ath:AT1G32640 GeneFarm:1895 TAIR:At1g32640 InParanoid:Q39204
KO:K13422 OMA:KRNHPAA PhylomeDB:Q39204 ProtClustDB:CLSN2682813
Genevestigator:Q39204 GermOnline:AT1G32640 GO:GO:2000068
Uniprot:Q39204
Length = 623
Score = 144 (55.7 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 38/110 (34%), Positives = 59/110 (53%)
Query: 63 DKRASDENLMAMKTRIVNKPGQGNRVASRS--PLQAQE----HVIAERKRREKMNQQFIA 116
DK A + + ++ +V + R R P +E HV AER+RREK+NQ+F A
Sbjct: 411 DKTAGESDHSDLEASVVKEVAVEKRPKKRGRKPANGREEPLNHVEAERQRREKLNQRFYA 470
Query: 117 LSAVIPGIKQMNKASVLEGTIKHLKELQERGKKLVEHTKRKAPESVVSVK 166
L AV+P + +M+KAS+L I ++ EL+ + K E K + + VK
Sbjct: 471 LRAVVPNVSKMDKASLLGDAIAYINELKSKVVK-TESEKLQIKNQLEEVK 519
>UNIPROTKB|Q6ZBI4 [details] [associations]
symbol:P0623F08.11 "Phaseolin G-box binding protein
PG1-like" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 HSSP:P22415 EMBL:AP003914 EMBL:AP004632
EnsemblPlants:LOC_Os08g43070.1 KEGG:dosa:Os08t0543700-00
OMA:PVISHVE Uniprot:Q6ZBI4
Length = 263
Score = 136 (52.9 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 31/79 (39%), Positives = 49/79 (62%)
Query: 81 KPGQGNRVASRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHL 140
KPG + P+ HV AER+RREK+N++F L A +P + +M+KAS+L + ++
Sbjct: 80 KPGPRSGGGGAPPIG---HVEAERQRREKLNRRFCELRAAVPTVSRMDKASLLADAVDYI 136
Query: 141 KELQERGKKLVEHTKRKAP 159
EL+ R ++L E R+AP
Sbjct: 137 AELRRRVERL-EAEARRAP 154
>UNIPROTKB|Q7F7Z2 [details] [associations]
symbol:Os01g0159800 "ESTs C26093(C11622)" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP008207
EMBL:CM000138 OMA:QPETISD ProtClustDB:CLSN2691085 EMBL:AP002539
RefSeq:NP_001042087.1 UniGene:Os.1443
EnsemblPlants:LOC_Os01g06640.1 EnsemblPlants:LOC_Os01g06640.2
GeneID:4324065 KEGG:osa:4324065 Uniprot:Q7F7Z2
Length = 258
Score = 133 (51.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 43/187 (22%), Positives = 85/187 (45%)
Query: 73 AMKTRIVNKPGQGNRVASRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASV 132
A+ + + G G L+ H AER+RRE++N L +IP KQM+KA++
Sbjct: 45 AVPPEMSSSSGSGRSATEARALKI--HSEAERRRRERINAHLTTLRRMIPDTKQMDKATL 102
Query: 133 LEGTIKHLKELQERGKKLVEHTKRKAPESVVSVKRSQQTLPDIVVRVSDNN--VLIR--I 188
L + +K+L+ + ++ + T + VS++ V+ N+ + I+ I
Sbjct: 103 LARVVDQVKDLKRKASEITQRTPLPPETNEVSIECFTGDAATAATTVAGNHKTLYIKASI 162
Query: 189 HCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQME-VEFCLTVKELVKN 247
C+ + I+ I L L + + G + ++ + E + +++K L +
Sbjct: 163 SCDDRP-DLIAGITHAFHGLRLRTVRAEMTSLGGRVQHVFILCREEGIAGGVSLKSLKEA 221
Query: 248 LRLALSK 254
+R AL+K
Sbjct: 222 VRQALAK 228
>TAIR|locus:2080615 [details] [associations]
symbol:bHLH39 "basic helix-loop-helix 39" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0010106 "cellular response to iron ion
starvation" evidence=IEP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0055072 "iron ion homeostasis" evidence=IGI]
InterPro:IPR011598 InterPro:IPR015660 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 PANTHER:PTHR13935 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL138655 GO:GO:0055072
HSSP:P61244 HOGENOM:HOG000238662 ProtClustDB:CLSN2683761
EMBL:AF488577 IPI:IPI00530143 PIR:T47758 RefSeq:NP_191257.1
UniGene:At.64158 ProteinModelPortal:Q9M1K0 SMR:Q9M1K0 IntAct:Q9M1K0
STRING:Q9M1K0 EnsemblPlants:AT3G56980.1 GeneID:824865
KEGG:ath:AT3G56980 TAIR:At3g56980 eggNOG:NOG265528
InParanoid:Q9M1K0 OMA:NCEELSQ PhylomeDB:Q9M1K0
Genevestigator:Q9M1K0 Uniprot:Q9M1K0
Length = 258
Score = 133 (51.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 47/188 (25%), Positives = 96/188 (51%)
Query: 79 VNKPGQGNRVASRSPLQAQE--HVIAERKRREKMNQQFIALSAVIPGIKQMNKASV---L 133
V+ +GN + +P+ ++ H +ER RR K+N F +L + +P Q K S+ +
Sbjct: 60 VSVSSEGNEI-DNNPVVVKKLNHNASERDRRRKINSLFSSLRSCLPASGQSKKLSIPATV 118
Query: 134 EGTIKHLKELQERGKKLVEHTKRKAPE------SVVSVKRSQQTLPDIV-----VRVSDN 182
++K++ ELQE+ KKL++ + + + VK+ + + + + R+ DN
Sbjct: 119 SRSLKYIPELQEQVKKLIKKKEELLVQISGQRNTECYVKQPPKAVANYISTVSATRLGDN 178
Query: 183 NVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQME-VE-FCLT 240
V+++I K + ISN++S +E+ V+++ + L T+ Q+E +E + L
Sbjct: 179 EVMVQISSSKIHNFSISNVLSGLEEDRFVLVDMSSSRSQGERLFYTLHLQVEKIENYKLN 238
Query: 241 VKELVKNL 248
+EL + +
Sbjct: 239 CEELSQRM 246
>TAIR|locus:2134583 [details] [associations]
symbol:AT4G00870 "AT4G00870" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AL161472 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238207 InterPro:IPR025610
Pfam:PF14215 EMBL:AF013294 EMBL:AJ519812 IPI:IPI00537799 PIR:T01559
RefSeq:NP_567195.1 UniGene:At.34506 ProteinModelPortal:O23090
SMR:O23090 EnsemblPlants:AT4G00870.1 GeneID:827990
KEGG:ath:AT4G00870 TAIR:At4g00870 eggNOG:NOG285642
InParanoid:O23090 OMA:SIECELM PhylomeDB:O23090
ProtClustDB:CLSN2917469 Genevestigator:O23090 Uniprot:O23090
Length = 423
Score = 127 (49.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 29/79 (36%), Positives = 46/79 (58%)
Query: 99 HVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKELQERGKKL-VEHTKRK 157
HV AE++RREK+N +F AL A++P + +M+KAS+L + +++ L+ + L E K K
Sbjct: 250 HVEAEKQRREKLNHRFYALRAIVPKVSRMDKASLLSDAVSYIESLKSKIDDLETEIKKMK 309
Query: 158 APESVVSVKRSQQTLPDIV 176
E+ S T P V
Sbjct: 310 MTETDKLDNSSSNTSPSSV 328
Score = 47 (21.6 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 19/67 (28%), Positives = 29/67 (43%)
Query: 6 DSTFIHQYQGNSQSNSTTHGSMPFSGLISFQDTDSLASYYSQMSNPNSEYYCTIKSEDKR 65
D F NSQ N TT+ S+ + D L +Y+ + +Y +S K
Sbjct: 73 DGHFCGNKNNNSQENYTTN-SIECE--LMMDGGDDLELFYA------ASFYGEDRSPRKE 123
Query: 66 ASDENLM 72
SDE+L+
Sbjct: 124 VSDESLV 130
>UNIPROTKB|Q7XKP5 [details] [associations]
symbol:OSJNBb0013O03.11 "OSJNBb0013O03.11 protein"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP008210 HOGENOM:HOG000006429 EMBL:AL731621
RefSeq:NP_001173851.1 UniGene:Os.98890
EnsemblPlants:LOC_Os04g23440.1 GeneID:9269507 KEGG:osa:9269507
OMA:NIAMERD Genevestigator:Q7XKP5 Uniprot:Q7XKP5
Length = 293
Score = 132 (51.5 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 24/65 (36%), Positives = 46/65 (70%)
Query: 88 VASRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKELQERG 147
VAS + + +++ ER RR+++N++ AL AV+P I +M+KAS++ I H+++LQE
Sbjct: 87 VASAAAAASSKNIAMERDRRKRLNEKLFALRAVVPKITKMDKASIVRDAIAHIEKLQEEE 146
Query: 148 KKLVE 152
++L++
Sbjct: 147 RQLLD 151
>TAIR|locus:2123954 [details] [associations]
symbol:AT4G29930 "AT4G29930" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AL161575 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AK117730 EMBL:BT005869 EMBL:AY568654
EMBL:AJ630482 EMBL:AK176201 EMBL:AK176276 EMBL:AK176674
EMBL:AK222212 EMBL:AK228201 EMBL:AF488569 IPI:IPI00516806
IPI:IPI00544272 IPI:IPI00546879 IPI:IPI00892082
RefSeq:NP_001031752.1 RefSeq:NP_001078471.1 RefSeq:NP_001119080.1
RefSeq:NP_194722.2 UniGene:At.44068 ProteinModelPortal:Q700E3
SMR:Q700E3 IntAct:Q700E3 EnsemblPlants:AT4G29930.3 GeneID:829116
KEGG:ath:AT4G29930 TAIR:At4g29930 eggNOG:NOG294060
HOGENOM:HOG000006429 InParanoid:Q8GYC3 OMA:PIENIGE PhylomeDB:Q700E3
ProtClustDB:CLSN2680169 Genevestigator:Q700E3 Uniprot:Q700E3
Length = 263
Score = 130 (50.8 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 25/62 (40%), Positives = 47/62 (75%)
Query: 89 ASRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKELQERGK 148
A+ SP ++ +V++ER RR+K+NQ+ AL +V+P I +++KASV++ +I +++EL ++ K
Sbjct: 46 AATSPASSK-NVVSERNRRQKLNQRLFALRSVVPNISKLDKASVIKDSIDYMQELIDQEK 104
Query: 149 KL 150
L
Sbjct: 105 TL 106
>TAIR|locus:504954829 [details] [associations]
symbol:GL3 "AT5G41315" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0010091 "trichome branching" evidence=IMP]
[GO:0001708 "cell fate specification" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0009957 "epidermal cell fate
specification" evidence=IMP] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR025610 Pfam:PF14215
GO:GO:0010091 HSSP:P61244 EMBL:AB006707 eggNOG:NOG320411
HOGENOM:HOG000237985 ProtClustDB:CLSN2682588 GO:GO:0009957
EMBL:AF246291 IPI:IPI00543830 RefSeq:NP_680372.1 UniGene:At.27204
ProteinModelPortal:Q9FN69 SMR:Q9FN69 IntAct:Q9FN69 STRING:Q9FN69
EnsemblPlants:AT5G41315.1 GeneID:834133 KEGG:ath:AT5G41315
TAIR:At5g41315 InParanoid:Q9FN69 OMA:ERTSANC PhylomeDB:Q9FN69
Genevestigator:Q9FN69 Uniprot:Q9FN69
Length = 637
Score = 136 (52.9 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 23/52 (44%), Positives = 41/52 (78%)
Query: 99 HVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKELQERGKKL 150
H + E+KRREK+N++F+ L +IP I +++K S+L+ TI++L+EL+ R ++L
Sbjct: 442 HAVLEKKRREKLNERFMTLRKIIPSINKIDKVSILDDTIEYLQELERRVQEL 493
Score = 39 (18.8 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 4 DQDSTFIHQYQGNSQSNSTTHGSMPFSGLI 33
D+ S+F + +S S+ T + P G++
Sbjct: 383 DKQSSFTRWKKSSSSSSGTATVTAPSQGML 412
>TAIR|locus:2154197 [details] [associations]
symbol:SPCH "AT5G53210" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010374 "stomatal complex development" evidence=IMP]
[GO:0010103 "stomatal complex morphogenesis" evidence=RCA]
[GO:0042127 "regulation of cell proliferation" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AB013388 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238962 GO:GO:0010374 EMBL:DQ868373
EMBL:AJ630498 EMBL:AY568670 IPI:IPI00520239 RefSeq:NP_200133.2
UniGene:At.50528 ProteinModelPortal:Q700C7 SMR:Q700C7 STRING:Q700C7
EnsemblPlants:AT5G53210.1 GeneID:835402 KEGG:ath:AT5G53210
TAIR:At5g53210 eggNOG:NOG325833 InParanoid:Q700C7 OMA:NHESSVI
PhylomeDB:Q700C7 ProtClustDB:CLSN2719098 Genevestigator:Q700C7
Uniprot:Q700C7
Length = 364
Score = 108 (43.1 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 38/146 (26%), Positives = 66/146 (45%)
Query: 21 STTHGSMPFSGLISFQDTDSLASYYSQMSNPNSEYYCTIKSEDKRASDENLMAMKTRIVN 80
S T S P G S ++ Y + + T K ED+ D + A +
Sbjct: 38 SPTAASTPKDGTTSSKELVKDQDYENSSPKRKKQRLETRKEEDEEEEDGDGEAEEDN--K 95
Query: 81 KPGQGNRVASRSPLQAQEHVIAERKRREKMNQQFIALSAVIPG--IKQMNKASVLEGTIK 138
+ GQ Q HV ER RR++MN+ L +++P +K+ ++AS++ G ++
Sbjct: 96 QDGQ----------QKMSHVTVERNRRKQMNEHLTVLRSLMPCFYVKRGDQASIIGGVVE 145
Query: 139 HLKELQERGKKLVEHTKRKAPESVVS 164
++ ELQ+ + L +RK V+S
Sbjct: 146 YISELQQVLQSLEAKKQRKTYAEVLS 171
Score = 64 (27.6 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 22/83 (26%), Positives = 41/83 (49%)
Query: 161 SVVS--VKRSQQTLPDIVVRVSDNNVLIRIHCEKQNIGFISNIVSEIEKLHLVV--INSR 216
SV++ V S+ L D+ V+ S NVL++ K G + I++ +E L L + +N
Sbjct: 272 SVINELVANSKSALADVEVKFSGANVLLKTVSHKIP-GQVMKIIAALEDLALEILQVNIN 330
Query: 217 TIP---FGNYALDITVVAQMEVE 236
T+ ++ + I + Q+ E
Sbjct: 331 TVDETMLNSFTIKIGIECQLSAE 353
>TAIR|locus:2082400 [details] [associations]
symbol:MUTE "AT3G06120" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0010374
"stomatal complex development" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005739
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000238962 EMBL:AC018907 GO:GO:0010374 EMBL:AF488580
EMBL:DQ863645 EMBL:DQ864972 EMBL:DQ446639 EMBL:DQ653068
IPI:IPI00548354 RefSeq:NP_187263.1 UniGene:At.40565
ProteinModelPortal:Q9M8K6 SMR:Q9M8K6 STRING:Q9M8K6
EnsemblPlants:AT3G06120.1 GeneID:819785 KEGG:ath:AT3G06120
TAIR:At3g06120 eggNOG:NOG271176 InParanoid:Q9M8K6 OMA:SHIAVER
PhylomeDB:Q9M8K6 ProtClustDB:CLSN2684638 Genevestigator:Q9M8K6
Uniprot:Q9M8K6
Length = 202
Score = 100 (40.3 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 99 HVIAERKRREKMNQQFIALSAVIPG--IKQMNKASVLEGTIKHLKELQERGKKLVEHTKR 156
H+ ER RR +MN+ +L ++ P IK+ ++AS++ G I+ +KELQ+ +++E KR
Sbjct: 3 HIAVERNRRRQMNEHLKSLRSLTPCFYIKRGDQASIIGGVIEFIKELQQL-VQVLESKKR 61
Query: 157 KAPESVVSVKRSQQTL 172
+ + S QT+
Sbjct: 62 RKTLNRPSFPYDHQTI 77
Score = 62 (26.9 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 18/71 (25%), Positives = 40/71 (56%)
Query: 174 DIVVRVSDNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQM 233
++ ++S +NV++R+ ++ +G + I+S +EKL V++ L VV ++
Sbjct: 116 NVEAKISGSNVVLRV-VSRRIVGQLVKIISVLEKLSFQVLHLNISSMEETVLYFFVV-KI 173
Query: 234 EVEFCLTVKEL 244
+E L+++EL
Sbjct: 174 GLECHLSLEEL 184
>TAIR|locus:2141206 [details] [associations]
symbol:DYT1 "AT4G21330" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IMP;TAS]
[GO:0048658 "tapetal layer development" evidence=IMP]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161554
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 GO:GO:0048658 EMBL:EF637083 EMBL:AL031187
IPI:IPI00519007 PIR:T05175 RefSeq:NP_193864.1 UniGene:At.54456
ProteinModelPortal:O81900 SMR:O81900 EnsemblPlants:AT4G21330.1
GeneID:827883 KEGG:ath:AT4G21330 TAIR:At4g21330 eggNOG:NOG316303
HOGENOM:HOG000112300 InParanoid:O81900 OMA:MEEAPPE PhylomeDB:O81900
ProtClustDB:CLSN2685365 Genevestigator:O81900 Uniprot:O81900
Length = 207
Score = 123 (48.4 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 30/84 (35%), Positives = 47/84 (55%)
Query: 102 AERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKELQERGKKLVE--HTKRKAP 159
AER+RREK++ + +AL + +P + M KAS++E I ++ ELQ K L+E H +AP
Sbjct: 36 AERRRREKLHCRLMALRSHVPIVTNMTKASIVEDAITYIGELQNNVKNLLETFHEMEEAP 95
Query: 160 ESVVSVKRSQQTLPDIVVRVSDNN 183
+ + P+ V SD N
Sbjct: 96 PEIDEEQTDPMIKPE--VETSDLN 117
>UNIPROTKB|Q5SMX2 [details] [associations]
symbol:P0498B01.25 "Basic helix-loop-helix protein-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP003417 ProteinModelPortal:Q5SMX2
EnsemblPlants:LOC_Os01g09930.1 Gramene:Q5SMX2 HOGENOM:HOG000237612
OMA:IRAREHI Uniprot:Q5SMX2
Length = 412
Score = 129 (50.5 bits), Expect = 9.4e-06, P = 9.4e-06
Identities = 25/58 (43%), Positives = 40/58 (68%)
Query: 98 EHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKELQERGKKLVEHTK 155
+H+I+ERKRREK+N F+AL AV+P + +KAS+L +H+K L+ + +L E +
Sbjct: 184 QHMISERKRREKLNDSFVALKAVLPTGSKKDKASILIRAREHIKSLESKLSELEEKNR 241
>UNIPROTKB|Q8H8E4 [details] [associations]
symbol:OJ1006F06.1 "Putative bHLH transcription protein"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000029066 EMBL:AC099399 ProteinModelPortal:Q8H8E4
STRING:Q8H8E4 Gramene:Q8H8E4 Uniprot:Q8H8E4
Length = 430
Score = 129 (50.5 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 48/165 (29%), Positives = 83/165 (50%)
Query: 83 GQGNRVASRSPLQA--QEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHL 140
G G V RS L ++++AER+RR+++N + L +++P I +M++ S+L TI ++
Sbjct: 165 GVGGGVHPRSKLHGTPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYV 224
Query: 141 KELQERGKKLVEHTKRKAPESVV---SVKRSQQ-TLPDIVVRVS-----DN----NVLIR 187
KEL ER K L E PE + ++K S +++VR S +N N I
Sbjct: 225 KELTERIKTLEEEIG-VTPEELDLLNTMKDSSSGNNNEMLVRNSTKFDVENRGSGNTRIE 283
Query: 188 IHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQ 232
I C N G + + VS +E L L + F ++ + + + +
Sbjct: 284 ICCPA-NPGVLLSTVSALEVLGLEIEQCVVSCFSDFGMQASCLQE 327
>UNIPROTKB|Q2R3F6 [details] [associations]
symbol:Os11g0523700 "Helix-loop-helix DNA-binding domain
containing protein, expressed" species:39947 "Oryza sativa Japonica
Group" [GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
GO:GO:0003677 EMBL:DP000010 EMBL:AP008217 GO:GO:0050826
GO:GO:0010440 Gene3D:4.10.280.10 SUPFAM:SSF47459
RefSeq:NP_001067987.2 UniGene:Os.56356
EnsemblPlants:LOC_Os11g32100.1 GeneID:4350609 KEGG:osa:4350609
OMA:DGKDSNA Uniprot:Q2R3F6
Length = 524
Score = 129 (50.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 37/126 (29%), Positives = 68/126 (53%)
Query: 61 SEDKRASDENLMAMKTRIVNKPGQGNRVASRSPLQAQEHVIAERKRREKMNQQFIALSAV 120
SED R +++ A K N G+ + + A+ +++AER+RR+K+N + L +V
Sbjct: 301 SEDARGGEDS-GAKKESNANSTVTGDGKGKKKGMPAK-NLMAERRRRKKLNDRLYMLRSV 358
Query: 121 IPGIKQMNKASVLEGTIKHLKELQERGKKL---VEHTKRKA--PESVVSVKRSQQTLPDI 175
+P I +M++AS+L I++LKEL ++ L +E + + P + S TLP +
Sbjct: 359 VPKISKMDRASILGDAIEYLKELLQKINDLQNELESSPATSSLPPTPTSFHPLTPTLPTL 418
Query: 176 VVRVSD 181
R+ +
Sbjct: 419 PSRIKE 424
>TAIR|locus:2080600 [details] [associations]
symbol:bHLH38 "basic helix-loop-helix 38" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0010106 "cellular response to iron ion
starvation" evidence=IEP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0055072 "iron ion homeostasis" evidence=IGI]
InterPro:IPR011598 InterPro:IPR015660 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 PANTHER:PTHR13935 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL138655 GO:GO:0055072
HSSP:P22415 HOGENOM:HOG000238662 ProtClustDB:CLSN2683761
EMBL:AF488576 EMBL:AK221542 EMBL:BT026419 IPI:IPI00516990
PIR:T47757 RefSeq:NP_191256.1 UniGene:At.34879
ProteinModelPortal:Q9M1K1 SMR:Q9M1K1 IntAct:Q9M1K1 STRING:Q9M1K1
DNASU:824864 EnsemblPlants:AT3G56970.1 GeneID:824864
KEGG:ath:AT3G56970 TAIR:At3g56970 eggNOG:NOG290862
InParanoid:Q9M1K1 OMA:KINCEEL PhylomeDB:Q9M1K1
Genevestigator:Q9M1K1 Uniprot:Q9M1K1
Length = 253
Score = 123 (48.4 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 49/195 (25%), Positives = 92/195 (47%)
Query: 38 TDSLASYYSQMSNPNSEYYC--TIKSEDKRASDENLMAMKTRIVNKPGQGNRVASRSPLQ 95
T+ SYY N N+ + T+ + +N + V+ +GN + +P+
Sbjct: 17 TNQYESYYGAGDNLNNGTFLELTVPQTYEVTHHQNSLG-----VSVSSEGNEI-DNNPVV 70
Query: 96 AQE--HVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLK---ELQERGKKL 150
++ H +ER RR+K+N F +L + +P Q K S+ E K LK ELQ++ K+L
Sbjct: 71 VKKLNHNASERDRRKKINTLFSSLRSCLPASDQSKKLSIPETVSKSLKYIPELQQQVKRL 130
Query: 151 VEHTK----RKAPESVVSVKRSQQT------LPDI-VVRVSDNNVLIRIHCEKQNIGFIS 199
++ + R + + + QQ L + R+ DN V++++ K + IS
Sbjct: 131 IQKKEEILVRVSGQRDFELYDKQQPKAVASYLSTVSATRLGDNEVMVQVSSSKIHNFSIS 190
Query: 200 NIVSEIEKLHLVVIN 214
N++ IE+ V+++
Sbjct: 191 NVLGGIEEDGFVLVD 205
>TAIR|locus:2065086 [details] [associations]
symbol:AT2G40200 "AT2G40200" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AF085279 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AF488586 EMBL:BT029997 EMBL:BT030051
IPI:IPI00547467 PIR:E84826 RefSeq:NP_181549.1 UniGene:At.37090
ProteinModelPortal:Q9XEF0 SMR:Q9XEF0 EnsemblPlants:AT2G40200.1
GeneID:818611 KEGG:ath:AT2G40200 TAIR:At2g40200 eggNOG:NOG318931
HOGENOM:HOG000095217 InParanoid:Q9XEF0 OMA:QPETISD PhylomeDB:Q9XEF0
ProtClustDB:CLSN2913057 ArrayExpress:Q9XEF0 Genevestigator:Q9XEF0
Uniprot:Q9XEF0
Length = 254
Score = 122 (48.0 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 33/128 (25%), Positives = 64/128 (50%)
Query: 96 AQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKELQERGKKLVEHTK 155
++ H +AE++RR+++N AL ++P +++KA++L I+ +KEL+++ +
Sbjct: 64 SRSHRLAEKRRRDRINSHLTALRKLVPNSDKLDKAALLATVIEQVKELKQKAAE--SPIF 121
Query: 156 RKAPESVVSVKRSQQTLPDIVVRVSDNNVLIRIH--CEKQNIGFISNIVSEIEKLHLVVI 213
+ P V +T+ D + N ++ + CE Q IS I+ + KL L I
Sbjct: 122 QDLPTEADEVTVQPETISDF--ESNTNTIIFKASFCCEDQPEA-ISEIIRVLTKLQLETI 178
Query: 214 NSRTIPFG 221
+ I G
Sbjct: 179 QAEIISVG 186
>TAIR|locus:2164605 [details] [associations]
symbol:AT5G56960 "AT5G56960" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010200 "response to chitin" evidence=IEP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0010200 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB024035 IPI:IPI00545938 RefSeq:NP_200506.1 UniGene:At.55597
ProteinModelPortal:Q9LTS4 SMR:Q9LTS4 EnsemblPlants:AT5G56960.1
GeneID:835798 KEGG:ath:AT5G56960 TAIR:At5g56960 eggNOG:NOG254434
HOGENOM:HOG000095216 InParanoid:Q9LTS4 OMA:RENATTH PhylomeDB:Q9LTS4
ProtClustDB:CLSN2687375 Genevestigator:Q9LTS4 Uniprot:Q9LTS4
Length = 466
Score = 124 (48.7 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 29/73 (39%), Positives = 42/73 (57%)
Query: 83 GQGNRVASRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKE 142
G G R S +H+I+ERKRREK+N+ F AL +++P + +KASVL + L
Sbjct: 274 GGGGRYTSGPSATQLQHMISERKRREKLNESFQALRSLLPPGTKKDKASVLSIAREQLSS 333
Query: 143 LQERGKKLVEHTK 155
LQ KL+E +
Sbjct: 334 LQGEISKLLERNR 346
Score = 38 (18.4 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 10 IHQYQGNSQSNSTTHG 25
I+Q + ++ N+TTHG
Sbjct: 252 INQRERFTRENATTHG 267
>TAIR|locus:2155503 [details] [associations]
symbol:ALC "AT5G67110" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0010047 "fruit dehiscence" evidence=IMP]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0010047 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB020742 EMBL:BT028946 EMBL:AF488605 IPI:IPI00537617
IPI:IPI00846166 IPI:IPI00846501 RefSeq:NP_001078810.1
RefSeq:NP_001078811.1 RefSeq:NP_201512.1 UniGene:At.28825
HSSP:P36956 ProteinModelPortal:Q9FHA2 SMR:Q9FHA2 IntAct:Q9FHA2
STRING:Q9FHA2 EnsemblPlants:AT5G67110.1 GeneID:836846
KEGG:ath:AT5G67110 TAIR:At5g67110 eggNOG:NOG329583
HOGENOM:HOG000033902 InParanoid:Q9FHA2 OMA:HTRINET PhylomeDB:Q9FHA2
ProtClustDB:CLSN2686902 Genevestigator:Q9FHA2 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 Uniprot:Q9FHA2
Length = 210
Score = 117 (46.2 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 24/64 (37%), Positives = 42/64 (65%)
Query: 81 KPGQGNRVASRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHL 140
+ G R + + + AQ H ++E+KRR K+N++ AL +IP + +KAS+L+ I++L
Sbjct: 80 RSGAKQRNSLKRNIDAQFHNLSEKKRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYL 139
Query: 141 KELQ 144
K+LQ
Sbjct: 140 KQLQ 143
>UNIPROTKB|Q69IU0 [details] [associations]
symbol:P0498F03.15 "Putative MYC-related DNA binding
protein RD22BP1" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AP008215 EMBL:AP006525 EMBL:AP007254
RefSeq:NP_001063693.1 UniGene:Os.86289
EnsemblPlants:LOC_Os09g34330.1 GeneID:4347601 KEGG:osa:4347601
OMA:GPTVSHV ProtClustDB:CLSN2725166 Uniprot:Q69IU0
Length = 284
Score = 120 (47.3 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 84 QGNRVASRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKEL 143
+G + R HV AER+RREK+N++F L A +P + +M+KAS+L ++ EL
Sbjct: 97 RGRKPGPRPDGPTVSHVEAERQRREKLNRRFCDLRAAVPTVSRMDKASLLADAAAYIAEL 156
Query: 144 QERGKKLVEHTKRKA 158
+ R +L E R+A
Sbjct: 157 RARVARL-ESDARQA 170
>TAIR|locus:2012393 [details] [associations]
symbol:AT1G68810 "AT1G68810" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AC011914 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC011665 EMBL:AY072161 EMBL:AY122983
IPI:IPI00517468 PIR:H96712 RefSeq:NP_564944.1 UniGene:At.46879
HSSP:P22415 ProteinModelPortal:Q9S7Y1 SMR:Q9S7Y1
EnsemblPlants:AT1G68810.1 GeneID:843213 KEGG:ath:AT1G68810
TAIR:At1g68810 eggNOG:NOG328059 HOGENOM:HOG000243133
InParanoid:Q9S7Y1 OMA:FVIKASL PhylomeDB:Q9S7Y1
ProtClustDB:CLSN2689090 Genevestigator:Q9S7Y1 Uniprot:Q9S7Y1
Length = 368
Score = 120 (47.3 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 38/164 (23%), Positives = 80/164 (48%)
Query: 96 AQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKELQERGKKLVEHTK 155
++ H AER+RRE++N L +++P + +KAS+L I+H+KEL+ R ++ T
Sbjct: 175 SKSHSEAERRRRERINNHLAKLRSILPNTTKTDKASLLAEVIQHVKELK-RETSVISETN 233
Query: 156 RKAPES---VVSVKRSQQTLPDIVVRVSDNNVLIR--IHCEKQNIGFISNIVSEIEKLHL 210
ES V+ ++T D +I+ + CE ++ + +++ ++ + L
Sbjct: 234 LVPTESDELTVAFTEEEET--------GDGRFVIKASLCCEDRS-DLLPDMIKTLKAMRL 284
Query: 211 VVINSRTIPFGNYALDITVVA-------QMEVEFCL-TVKELVK 246
+ + G ++ V ++E E+C+ T++E +K
Sbjct: 285 KTLKAEITTVGGRVKNVLFVTGEESSGEEVEEEYCIGTIEEALK 328
>TAIR|locus:2115080 [details] [associations]
symbol:SPT "AT4G36930" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009908 "flower
development" evidence=NAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;TAS]
[GO:0009409 "response to cold" evidence=IMP] [GO:0010114 "response
to red light" evidence=IMP] [GO:0010187 "negative regulation of
seed germination" evidence=IMP] [GO:0010154 "fruit development"
evidence=IMP] [GO:0048440 "carpel development" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007623 "circadian
rhythm" evidence=IEP] InterPro:IPR011598 InterPro:IPR024097
InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0007623 GO:GO:0009409 GO:GO:0003700 GO:GO:0006351
GO:GO:0010114 GO:GO:0010187 GO:GO:0048440 GO:GO:0010154
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:Z99707 EMBL:AL161590 EMBL:AF319540
EMBL:AK229267 EMBL:BT026462 IPI:IPI00541204 PIR:B85436
RefSeq:NP_568010.1 UniGene:At.4639 ProteinModelPortal:Q9FUA4
SMR:Q9FUA4 IntAct:Q9FUA4 STRING:Q9FUA4 EnsemblPlants:AT4G36930.1
GeneID:829847 KEGG:ath:AT4G36930 TAIR:At4g36930 eggNOG:NOG276771
HOGENOM:HOG000090429 InParanoid:Q9FUA4 OMA:NAPEMIN PhylomeDB:Q9FUA4
ProtClustDB:CLSN2917674 Genevestigator:Q9FUA4 GermOnline:AT4G36930
Uniprot:Q9FUA4
Length = 373
Score = 120 (47.3 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 30/95 (31%), Positives = 54/95 (56%)
Query: 50 NPNSEYYCTIKSEDKRASDENLMAMKTRIVNKPGQGNRVASRSPLQAQEHVIAERKRREK 109
N EY C + + DE A + K G +R +S+ A+ H ++E++RR +
Sbjct: 160 NETDEYDCESEEGGEAVVDE---APSS----KSGPSSRSSSKRCRAAEVHNLSEKRRRSR 212
Query: 110 MNQQFIALSAVIPGIKQMNKASVLEGTIKHLKELQ 144
+N++ AL ++IP + +KAS+L+ I++LK+LQ
Sbjct: 213 INEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQ 247
>TAIR|locus:2158392 [details] [associations]
symbol:BHLH92 "AT5G43650" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB016875 EMBL:AY065390 EMBL:AY096718 IPI:IPI00529613
RefSeq:NP_199178.1 UniGene:At.28504 ProteinModelPortal:Q9FIX5
SMR:Q9FIX5 PRIDE:Q9FIX5 EnsemblPlants:AT5G43650.1 GeneID:834385
KEGG:ath:AT5G43650 TAIR:At5g43650 eggNOG:NOG311504
HOGENOM:HOG000090799 InParanoid:Q9FIX5 OMA:QSYLALH PhylomeDB:Q9FIX5
ProtClustDB:CLSN2686830 Genevestigator:Q9FIX5 Uniprot:Q9FIX5
Length = 247
Score = 116 (45.9 bits), Expect = 0.00010, P = 0.00010
Identities = 31/124 (25%), Positives = 64/124 (51%)
Query: 86 NRVASRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKELQE 145
N VA +++ H++ ER RREK Q ++AL +++P + +K S++E + + +LQ
Sbjct: 78 NTVAPEKE-RSRRHMLKERTRREKQKQSYLALHSLLPFATKNDKNSIVEKAVDEIAKLQR 136
Query: 146 RGKKLVEHTKRKAPESVVSVKRSQQTLPDIVVRVSDNNVLIRIHCEKQNIGFISNIVSEI 205
K+LV K E S K + + VRV+ L + + + ++ ++ +++
Sbjct: 137 LKKELVRRIK-VIEEK--SAKDGHDEMSETKVRVNLKEPLSGLDSMLEALHYLKSMGTKL 193
Query: 206 EKLH 209
+ +H
Sbjct: 194 KTVH 197
>UNIPROTKB|Q948F6 [details] [associations]
symbol:OSJNBa0049O12.18 "Putative SPATULA" species:4530
"Oryza sativa" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P36956
PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:AC069158
ProteinModelPortal:Q948F6 Gramene:Q948F6 Genevestigator:Q948F6
Uniprot:Q948F6
Length = 298
Score = 117 (46.2 bits), Expect = 0.00012, P = 0.00012
Identities = 26/82 (31%), Positives = 52/82 (63%)
Query: 63 DKRASDENLMAMKTRIVNKPGQGNRVASRSPLQAQEHVIAERKRREKMNQQFIALSAVIP 122
D+ S+E L + ++ +P + SR+ A+ H ++E++RR ++N++ AL ++IP
Sbjct: 4 DRCESEEALGSSESEQPTRPARPRGKRSRA---AEVHNLSEKRRRSRINEKMKALQSLIP 60
Query: 123 GIKQMNKASVLEGTIKHLKELQ 144
+ +KAS+L+ I++LK+LQ
Sbjct: 61 NSSKTDKASMLDDAIEYLKQLQ 82
>UNIPROTKB|Q5NAE0 [details] [associations]
symbol:P0498A12.33 "Putative BP-5 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003020
ProteinModelPortal:Q5NAE0 Gramene:Q5NAE0 Uniprot:Q5NAE0
Length = 565
Score = 121 (47.7 bits), Expect = 0.00013, P = 0.00013
Identities = 28/88 (31%), Positives = 55/88 (62%)
Query: 57 CTIKSEDKRASDENLMAMKTRIVNKPGQGNRVASRSPLQAQEHVIAERKRREKMNQQFIA 116
C ++E + D++L + ++ K G + SR+ A+ H ++ER+RR+++N++ A
Sbjct: 279 CQAQAECSASQDDDLDD-EPGVLRKSGTRSTKRSRT---AEVHNLSERRRRDRINEKMRA 334
Query: 117 LSAVIPGIKQMNKASVLEGTIKHLKELQ 144
L +IP +++KAS+L+ I++LK LQ
Sbjct: 335 LQELIPNCNKIDKASMLDEAIEYLKTLQ 362
>UNIPROTKB|Q2QMN2 [details] [associations]
symbol:LOC_Os12g40590 "Helix-loop-helix DNA-binding domain
containing protein, expressed" species:39947 "Oryza sativa Japonica
Group" [GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:DP000011 EMBL:CM000149 eggNOG:NOG272270
KEGG:dosa:Os12t0597800-01 Uniprot:Q2QMN2
Length = 265
Score = 115 (45.5 bits), Expect = 0.00016, P = 0.00016
Identities = 26/87 (29%), Positives = 51/87 (58%)
Query: 64 KRASDENLMA-MKTRIVNKPGQGNRV---ASRSPLQAQEHVIAERKRREKMNQQFIALSA 119
K+ E L M ++ + + RV A R+P A+ H + E++RR ++N++F L
Sbjct: 118 KKPDGEPLTEKMDKKLPTRTEERRRVKHKARRNPGYAETHGLTEKRRRSRINEKFKMLQR 177
Query: 120 VIPGIKQMNKASVLEGTIKHLKELQER 146
++PG + +++S L+ TI ++K LQ++
Sbjct: 178 LVPGCDKCSQSSTLDRTIHYMKSLQQQ 204
>TAIR|locus:2039445 [details] [associations]
symbol:AMS "AT2G16910" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009555 "pollen development" evidence=IMP] [GO:0048658 "tapetal
layer development" evidence=IMP] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0009555 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR025610
Pfam:PF14215 EMBL:AC005167 EMBL:AF488565 IPI:IPI00529182 PIR:G84545
RefSeq:NP_179283.2 UniGene:At.48482 UniGene:At.70395
ProteinModelPortal:Q9ZVX2 SMR:Q9ZVX2 STRING:Q9ZVX2 PRIDE:Q9ZVX2
EnsemblPlants:AT2G16910.1 GeneID:816194 KEGG:ath:AT2G16910
TAIR:At2g16910 eggNOG:NOG313389 HOGENOM:HOG000033929
InParanoid:Q9ZVX2 OMA:PRTKSCE PhylomeDB:Q9ZVX2
ProtClustDB:CLSN2690121 ArrayExpress:Q9ZVX2 Genevestigator:Q9ZVX2
GO:GO:0048658 Uniprot:Q9ZVX2
Length = 571
Score = 119 (46.9 bits), Expect = 0.00022, P = 0.00022
Identities = 21/61 (34%), Positives = 43/61 (70%)
Query: 98 EHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKELQERGKKLVEHTKRK 157
++++AER+RR+K+N + AL +++P I ++++AS+L I ++KELQ K+L + +
Sbjct: 314 KNLMAERRRRKKLNDRLYALRSLVPRITKLDRASILGDAINYVKELQNEAKELQDELEEN 373
Query: 158 A 158
+
Sbjct: 374 S 374
>UNIPROTKB|Q8GRJ1 [details] [associations]
symbol:OJ1343_B12.103 "Transcription factor BHLH9-like
protein" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 HSSP:P61244 EMBL:AP003824 EMBL:AP004010
Uniprot:Q8GRJ1
Length = 417
Score = 117 (46.2 bits), Expect = 0.00023, P = 0.00023
Identities = 26/82 (31%), Positives = 51/82 (62%)
Query: 64 KRASDENLMAMKTRIVNKPGQGNRVASRSPLQAQE-HVIAERKRREKMNQQFIALSAVIP 122
KR +E L+ + + ++ R A++ +A E H ++ER+RR+++N++ AL ++P
Sbjct: 198 KRGREE-LVDSLSEVADETRPSKRPAAKRRTRAAEVHNLSERRRRDRINEKLRALQELVP 256
Query: 123 GIKQMNKASVLEGTIKHLKELQ 144
+ +KAS+L+ I++LK LQ
Sbjct: 257 HCNKTDKASILDEAIEYLKSLQ 278
>UNIPROTKB|Q84LF9 [details] [associations]
symbol:RERJ1 "Transcription Factor" species:4530 "Oryza
sativa" [GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P01106 EMBL:AB040744
ProteinModelPortal:Q84LF9 Gramene:Q84LF9 Genevestigator:Q84LF9
Uniprot:Q84LF9
Length = 310
Score = 115 (45.5 bits), Expect = 0.00023, P = 0.00023
Identities = 19/56 (33%), Positives = 41/56 (73%)
Query: 96 AQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKELQERGKKLV 151
A ++++ ER RR K+N++ AL +V+P I +M+KAS+++ I++++ LQ ++++
Sbjct: 91 ANKNILMERDRRRKLNEKLYALRSVVPNITKMDKASIIKDAIEYIQRLQAEEQQML 146
>TAIR|locus:2090847 [details] [associations]
symbol:ICE1 "AT3G26744" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA;TAS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=IEP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA;IDA] [GO:0050826 "response to freezing"
evidence=RCA;IMP] [GO:0010440 "stomatal lineage progression"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0009410 "response to xenobiotic
stimulus" evidence=RCA] [GO:0009640 "photomorphogenesis"
evidence=RCA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=RCA] [GO:0009845 "seed germination"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0009933 "meristem structural organization"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010182 "sugar mediated signaling pathway" evidence=RCA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0019915 "lipid
storage" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0048522 "positive regulation of
cellular process" evidence=RCA] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0045893 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0050826 EMBL:AB016889 GO:GO:0010440
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AB026648 EMBL:AY195621
EMBL:AY079016 EMBL:BT020379 EMBL:AK228443 IPI:IPI00518051
IPI:IPI00656676 RefSeq:NP_001030774.1 RefSeq:NP_001030776.2
RefSeq:NP_189309.2 UniGene:At.25302 ProteinModelPortal:Q9LSE2
SMR:Q9LSE2 STRING:Q9LSE2 PaxDb:Q9LSE2 PRIDE:Q9LSE2
EnsemblPlants:AT3G26744.1 EnsemblPlants:AT3G26744.2
EnsemblPlants:AT3G26744.4 GeneID:822287 KEGG:ath:AT3G26744
TAIR:At3g26744 eggNOG:NOG236974 HOGENOM:HOG000085036
InParanoid:Q9LSE2 OMA:NSESSGM PhylomeDB:Q9LSE2
ProtClustDB:CLSN2690572 Genevestigator:Q9LSE2 GermOnline:AT3G26744
Uniprot:Q9LSE2
Length = 494
Score = 118 (46.6 bits), Expect = 0.00023, P = 0.00023
Identities = 41/145 (28%), Positives = 73/145 (50%)
Query: 18 QSNSTTHGSMPFSGLISFQDTDSLASYYSQMSNPNSEYYCTIKSEDKRASDENLMAMKTR 77
QS+ + G+ SG+ F D + ++S N E S++ S + A +
Sbjct: 241 QSSGSKMGNSESSGMRRFSDDGDMDETGIEVSGLNYE------SDEINESGK--AAESVQ 292
Query: 78 IVNKPGQGNRVASRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTI 137
I G G + + + A ++++AER+RR+K+N + L +V+P I +M++AS+L I
Sbjct: 293 I----GGGGK-GKKKGMPA-KNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAI 346
Query: 138 KHLKELQERGKKLVEHTKRKAPESV 162
+LKEL +R L + P S+
Sbjct: 347 DYLKELLQRINDLHNELESTPPGSL 371
>TAIR|locus:2053733 [details] [associations]
symbol:PIF4 "AT2G43010" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0010017 "red or far-red light
signaling pathway" evidence=RCA;IMP] [GO:0010161 "red light
signaling pathway" evidence=IGI] [GO:0009704 "de-etiolation"
evidence=IMP] [GO:0010600 "regulation of auxin biosynthetic
process" evidence=IDA] [GO:0010928 "regulation of auxin mediated
signaling pathway" evidence=IDA] [GO:0000165 "MAPK cascade"
evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0006612 "protein targeting to
membrane" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=RCA] [GO:0009617 "response to bacterium" evidence=RCA]
[GO:0009630 "gravitropism" evidence=RCA] [GO:0009862 "systemic
acquired resistance, salicylic acid mediated signaling pathway"
evidence=RCA] [GO:0009867 "jasmonic acid mediated signaling
pathway" evidence=RCA] [GO:0010310 "regulation of hydrogen peroxide
metabolic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA] [GO:0030003
"cellular cation homeostasis" evidence=RCA] [GO:0031348 "negative
regulation of defense response" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0009585 Gene3D:4.10.280.10
SUPFAM:SSF47459 GO:GO:0010161 GO:GO:0009704 GO:GO:0010928
EMBL:AC006224 EMBL:AJ440755 EMBL:AF251694 EMBL:AY142625
EMBL:AF360221 EMBL:EF193514 EMBL:EF193515 EMBL:EF193516
EMBL:EF193517 EMBL:EF193518 EMBL:EF193519 EMBL:EF193520
EMBL:EF193521 EMBL:EF193522 EMBL:EF193523 EMBL:EF193524
EMBL:EF193525 EMBL:EF193526 EMBL:EF193527 IPI:IPI00520232
IPI:IPI00534557 PIR:H84860 RefSeq:NP_565991.2 UniGene:At.19015
ProteinModelPortal:Q8W2F3 SMR:Q8W2F3 IntAct:Q8W2F3 STRING:Q8W2F3
EnsemblPlants:AT2G43010.1 GeneID:818903 KEGG:ath:AT2G43010
TAIR:At2g43010 eggNOG:NOG244119 InParanoid:Q8W2F3 KO:K16189
OMA:IRETEME PhylomeDB:Q8W2F3 ProtClustDB:CLSN2680212
Genevestigator:Q8W2F3 GermOnline:AT2G43010 GO:GO:0010600
Uniprot:Q8W2F3
Length = 430
Score = 117 (46.2 bits), Expect = 0.00024, P = 0.00024
Identities = 27/78 (34%), Positives = 50/78 (64%)
Query: 67 SDENLMAMKTRIVNKPGQGNRVASRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQ 126
+DE++ ++ I NK Q + ++R A+ H ++ER+RR+++N++ AL +IP +
Sbjct: 232 TDESV-SLSDAIGNKSNQRSG-SNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSK 289
Query: 127 MNKASVLEGTIKHLKELQ 144
+KAS+L+ I +LK LQ
Sbjct: 290 TDKASILDEAIDYLKSLQ 307
>TAIR|locus:2089418 [details] [associations]
symbol:AT3G21330 "AT3G21330" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP001305 EMBL:AF488617 EMBL:BT004279 EMBL:BT020364
IPI:IPI00541948 RefSeq:NP_188770.1 UniGene:At.38078
ProteinModelPortal:Q8S3D2 SMR:Q8S3D2 EnsemblPlants:AT3G21330.1
GeneID:821687 KEGG:ath:AT3G21330 TAIR:At3g21330 eggNOG:NOG330001
HOGENOM:HOG000095219 InParanoid:Q9LIG3 OMA:LMARELC PhylomeDB:Q8S3D2
ProtClustDB:CLSN2685101 Genevestigator:Q8S3D2 Uniprot:Q8S3D2
Length = 373
Score = 116 (45.9 bits), Expect = 0.00025, P = 0.00025
Identities = 40/144 (27%), Positives = 70/144 (48%)
Query: 30 SGLISFQDTDSLASYYSQMSNPNSEYYCTIKSEDKRASDENLMAMKTRIVNKPGQGNRVA 89
S ISFQ + L S P++E +K RA+ + IV KP + N
Sbjct: 220 SSNISFQHSTCL----SDNVEPDAEAIAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKI 275
Query: 90 SRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKELQERGKK 149
S P +A R+RRE+++++ L ++PG +M+ AS+L+ +LK L+ + K
Sbjct: 276 STDP-----QTVAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKA 330
Query: 150 LVEHTKRKAPESVVSVKRSQQTLP 173
L E+ + K ++ +S + + P
Sbjct: 331 L-ENLRPKLDQTNLSFSSAPTSFP 353
>UNIPROTKB|Q5SMX4 [details] [associations]
symbol:P0498B01.36 "cDNA clone:J033115I17, full insert
sequence" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AP008207 EMBL:AP003417 EMBL:HQ858870
EMBL:AK102964 RefSeq:NP_001042293.1 UniGene:Os.32770 GeneID:4327325
KEGG:osa:4327325 eggNOG:NOG253236 OMA:GNNGFMC
ProtClustDB:CLSN2691168 Uniprot:Q5SMX4
Length = 439
Score = 117 (46.2 bits), Expect = 0.00025, P = 0.00025
Identities = 23/58 (39%), Positives = 39/58 (67%)
Query: 98 EHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKELQERGKKLVEHTK 155
+H+I+ERKRREK+N F+AL AV+P + +K S+L +++K L+ + +L E +
Sbjct: 254 QHMISERKRREKLNDSFLALKAVLPPGSKKDKTSILIRAREYVKSLESKLSELEEKNR 311
>UNIPROTKB|Q8WYA1 [details] [associations]
symbol:ARNTL2 "Aryl hydrocarbon receptor nuclear
translocator-like protein 2" species:9606 "Homo sapiens"
[GO:0004871 "signal transducer activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0046983 "protein dimerization
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IDA;NAS] [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0009649 "entrainment of circadian clock"
evidence=NAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0007623 "circadian
rhythm" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0000982 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity"
evidence=IDA] InterPro:IPR000014 InterPro:IPR001067
InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091
SMART:SM00353 InterPro:IPR001610 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0009649 GO:GO:0007623 GO:GO:0045944
GO:GO:0005667 GO:GO:0004871 GO:GO:0000982 SMART:SM00086
TIGRFAMs:TIGR00229 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOVERGEN:HBG107503 CTD:56938 eggNOG:NOG288887 KO:K09099
EMBL:AB039921 EMBL:AF256215 EMBL:AF231338 EMBL:AF231339
EMBL:AF246960 EMBL:AF246961 EMBL:AF246962 EMBL:AF246963
EMBL:AK296706 EMBL:AC068794 EMBL:AC092829 EMBL:BC000172
EMBL:BC125061 EMBL:BC125062 IPI:IPI00142781 IPI:IPI00163662
IPI:IPI00465306 IPI:IPI00788724 IPI:IPI00789255 IPI:IPI00795339
IPI:IPI00827866 IPI:IPI00827897 IPI:IPI01009213
RefSeq:NP_001234931.1 RefSeq:NP_001234932.1 RefSeq:NP_001234933.1
RefSeq:NP_001234934.1 RefSeq:NP_064568.3 UniGene:Hs.434269
UniGene:Hs.445447 PDB:2KDK PDBsum:2KDK ProteinModelPortal:Q8WYA1
SMR:Q8WYA1 IntAct:Q8WYA1 STRING:Q8WYA1 PhosphoSite:Q8WYA1
DMDM:124007121 PaxDb:Q8WYA1 PRIDE:Q8WYA1 Ensembl:ENST00000261178
Ensembl:ENST00000266503 Ensembl:ENST00000311001
Ensembl:ENST00000395901 Ensembl:ENST00000542388
Ensembl:ENST00000544915 Ensembl:ENST00000546179 GeneID:56938
KEGG:hsa:56938 UCSC:uc001rht.2 UCSC:uc001rhu.2 UCSC:uc001rhv.2
UCSC:uc001rhw.3 UCSC:uc009zji.2 GeneCards:GC12P027485
H-InvDB:HIX0037110 HGNC:HGNC:18984 MIM:614517 neXtProt:NX_Q8WYA1
PharmGKB:PA134896555 InParanoid:Q8WYA1 OMA:IPQCNPM PhylomeDB:Q8WYA1
GenomeRNAi:56938 NextBio:62501 ArrayExpress:Q8WYA1 Bgee:Q8WYA1
CleanEx:HS_ARNTL2 Genevestigator:Q8WYA1 Uniprot:Q8WYA1
Length = 636
Score = 119 (46.9 bits), Expect = 0.00025, P = 0.00025
Identities = 53/244 (21%), Positives = 108/244 (44%)
Query: 19 SNSTTHGSMPFS-GLISFQDTDSLASYYSQMSNPNSEYYCTIKSEDKRASDENLMAMKTR 77
S+ + G+ P + G S T+ S+P+ T K +K + + + TR
Sbjct: 26 SSRVSPGTRPTAMGSFSSHMTEFPRKRKGSDSDPSQSGIMTEKVVEKLSQNPLTYLLSTR 85
Query: 78 IVNKPGQGNRVAS---RSPLQA--QEHVIAERKRREKMNQQFIALSAVIPGI----KQMN 128
I G+RV + ++A + H E++RR+KMN LSA+IP ++++
Sbjct: 86 IEISASSGSRVEDGEHQVKMKAFREAHSQTEKRRRDKMNNLIEELSAMIPQCNPMARKLD 145
Query: 129 KASVLEGTIKHLKELQERGKKLVEHTKRKAPESVVSVKRSQQTLPDIVVRVSDNNVLIRI 188
K +VL ++HL+ L+ V R P + L ++++ ++ + + +
Sbjct: 146 KLTVLRMAVQHLRSLKGLTNSYVGSNYR--PSFL-----QDNELRHLILKTAEGFLFV-V 197
Query: 189 HCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNL 248
CE+ I F+S VS+I + +++ + D+ V + F ++ +E + +
Sbjct: 198 GCERGKILFVSKSVSKILNYDQASLTGQSLFDFLHPKDVAKVKEQLSSFDISPREKLIDA 257
Query: 249 RLAL 252
+ L
Sbjct: 258 KTGL 261
>UNIPROTKB|Q58GE3 [details] [associations]
symbol:UDT1 "Undeveloped tapetum 1" species:39947 "Oryza
sativa Japonica Group" [GO:0005634 "nucleus" evidence=IDA]
[GO:0048656 "tapetal layer formation" evidence=IMP] [GO:0048658
"tapetal layer development" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0048656 EMBL:AY953870
STRING:Q58GE3 KEGG:dosa:Os07t0549600-01 Gramene:Q58GE3
HOGENOM:HOG000084429 Uniprot:Q58GE3
Length = 234
Score = 112 (44.5 bits), Expect = 0.00026, P = 0.00026
Identities = 37/134 (27%), Positives = 60/134 (44%)
Query: 102 AERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKELQERGKKLVEH---TKRKA 158
AER+RR ++N AL AV+P I +M+K + L I+H+K LQ +L + +A
Sbjct: 69 AERRRRGRLNGNIFALRAVVPKITKMSKEATLSDAIEHIKNLQNEVLELQRQLGDSPGEA 128
Query: 159 PESVVSVKRSQQTLPDIVVRVSDNNVLIRIHCEKQNI--------GFISNIVSEIEKLHL 210
E S S+ +P LI + K N+ G + ++ + +
Sbjct: 129 WEKQGSASCSESFVPTENAHYQGQVELISLGSSKYNLKIFWTKRAGLFTKVLEALCSYKV 188
Query: 211 VVINSRTIPFGNYA 224
V++ TI F YA
Sbjct: 189 QVLSLNTISFYGYA 202
>TAIR|locus:2126876 [details] [associations]
symbol:UNE10 "AT4G00050" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009567
"double fertilization forming a zygote and endosperm" evidence=IMP]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0009506 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:AL161471 HSSP:P22415 GO:GO:0009567
EMBL:AF069299 EMBL:AF488561 EMBL:AK117229 EMBL:BT025971
IPI:IPI00517893 PIR:T01333 RefSeq:NP_191916.3 UniGene:At.44779
ProteinModelPortal:Q8GZ38 SMR:Q8GZ38 IntAct:Q8GZ38
EnsemblPlants:AT4G00050.1 GeneID:828175 KEGG:ath:AT4G00050
TAIR:At4g00050 eggNOG:NOG239145 HOGENOM:HOG000084918
InParanoid:Q8GZ38 OMA:MMSRMNM PhylomeDB:Q8GZ38
ProtClustDB:CLSN2690671 Genevestigator:Q8GZ38 Uniprot:Q8GZ38
Length = 399
Score = 114 (45.2 bits), Expect = 0.00047, P = 0.00047
Identities = 27/90 (30%), Positives = 51/90 (56%)
Query: 81 KPGQGNRVASRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHL 140
K G + V+++ A H +ERKRR+K+NQ+ L ++P + +KAS+L+ I++L
Sbjct: 200 KAGGKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYL 259
Query: 141 KELQERGKKLVEHTKRKAPESVVSVKRSQQ 170
K+LQ + + ++ P ++ + QQ
Sbjct: 260 KQLQAQVSMM---SRMNMPSMMLPMAMQQQ 286
>TAIR|locus:2116977 [details] [associations]
symbol:AT4G01460 "AT4G01460" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AF488590 EMBL:AF096370 EMBL:AL161492 EMBL:AY099780
EMBL:AY128881 IPI:IPI00528581 PIR:A85019 PIR:T01948
RefSeq:NP_192055.1 UniGene:At.34425 ProteinModelPortal:Q9M128
SMR:Q9M128 EnsemblPlants:AT4G01460.1 GeneID:828089
KEGG:ath:AT4G01460 TAIR:At4g01460 eggNOG:NOG293017
HOGENOM:HOG000238962 InParanoid:Q9M128 OMA:QINGEVM PhylomeDB:Q9M128
ProtClustDB:CLSN2685500 Genevestigator:Q9M128 Uniprot:Q9M128
Length = 315
Score = 98 (39.6 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 35/157 (22%), Positives = 71/157 (45%)
Query: 3 VDQDSTFIHQYQGNSQSNSTTHGSMPFSGLISFQDTDSLASYYSQMSNPNSEYYCTIKSE 62
+++ F+ Q +TT + L+ Q +S S + +N + T E
Sbjct: 22 MEEKIPFLQMLQCIEHPFTTTEPNQFLQSLLQIQTLES-KSCLTLETNIKRDPGQTDDPE 80
Query: 63 DKRASDENLMAMKTRIVNKPGQGNRVASRSPLQAQEHVIAERKRREKMNQQFIALSAVIP 122
++ + +K + K + + Q H+ ER RR +MN+ +L +++P
Sbjct: 81 KDPRTENGAVTVKEKRKRKRTRAPKNKDEVENQRMTHIAVERNRRRQMNEHLNSLRSLMP 140
Query: 123 G--IKQMNKASVLEGTIKHLKELQERGKKLVEHTKRK 157
+++ ++AS++ G I +KEL++ + L E KRK
Sbjct: 141 PSFLQRGDQASIVGGAIDFIKELEQLLQSL-EAEKRK 176
Score = 52 (23.4 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 14/57 (24%), Positives = 31/57 (54%)
Query: 174 DIVVRVSDNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVIN---SRTIPFGNYALDI 227
++ V N+V +++ C++ + IVS IE+L L +++ S + F Y+ ++
Sbjct: 223 EVEATVIQNHVSLKVRCKRGKRQILKAIVS-IEELKLAILHLTISSSFDFVIYSFNL 278
>TAIR|locus:2129710 [details] [associations]
symbol:bHLH104 "AT4G14410" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
EMBL:AL161538 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:Z97336 HOGENOM:HOG000238732
ProtClustDB:CLSN2689429 EMBL:AF488628 EMBL:AY102106 EMBL:AY133565
EMBL:AY088053 IPI:IPI00527516 IPI:IPI00532570 PIR:B71406
RefSeq:NP_567431.1 RefSeq:NP_849383.1 UniGene:At.4272
ProteinModelPortal:Q8L467 SMR:Q8L467 EnsemblPlants:AT4G14410.1
GeneID:827086 KEGG:ath:AT4G14410 TAIR:At4g14410 eggNOG:NOG307178
InParanoid:Q8L467 OMA:TKACRER PhylomeDB:Q8L467
Genevestigator:Q8L467 Uniprot:Q8L467
Length = 283
Score = 111 (44.1 bits), Expect = 0.00055, P = 0.00054
Identities = 27/72 (37%), Positives = 46/72 (63%)
Query: 103 ERKRREKMNQQFIALSAVI-PG-IKQMNKASVLEGTIKHLKELQERGKKLVEHTKRKAPE 160
ER RREK+N++F+ LS+V+ PG + +K ++L+ I+ L +L++ KL E T +K E
Sbjct: 139 ERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDDAIRILNQLRDEALKL-EETNQKLLE 197
Query: 161 SVVSVKRSQQTL 172
+ S+K + L
Sbjct: 198 EIKSLKAEKNEL 209
>TAIR|locus:2012345 [details] [associations]
symbol:PIF3 "AT1G09530" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009639 "response to red or far red
light" evidence=IMP] [GO:0010017 "red or far-red light signaling
pathway" evidence=RCA;IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0042802 "identical protein binding" evidence=IPI] [GO:0031539
"positive regulation of anthocyanin metabolic process"
evidence=IMP] [GO:0009740 "gibberellic acid mediated signaling
pathway" evidence=IMP] [GO:0009704 "de-etiolation" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=RCA] [GO:0009630
"gravitropism" evidence=RCA] [GO:0007165 "signal transduction"
evidence=TAS] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC003970
GO:GO:0009585 Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0010017
GO:GO:0009704 GO:GO:0009740 GO:GO:0031539 EMBL:AF100166
EMBL:AF251693 EMBL:AF088280 EMBL:AK117255 EMBL:EF193482
EMBL:EF193483 EMBL:EF193484 EMBL:EF193485 EMBL:EF193486
EMBL:EF193487 EMBL:EF193488 EMBL:EF193489 EMBL:EF193490
EMBL:EF193491 EMBL:EF193492 EMBL:EF193493 EMBL:EF193494
EMBL:EF193495 EMBL:EF193496 IPI:IPI00530297 PIR:H86228
RefSeq:NP_172424.1 RefSeq:NP_849626.1 UniGene:At.10926
ProteinModelPortal:O80536 SMR:O80536 DIP:DIP-33892N IntAct:O80536
STRING:O80536 EnsemblPlants:AT1G09530.1 EnsemblPlants:AT1G09530.2
GeneID:837479 KEGG:ath:AT1G09530 TAIR:At1g09530 eggNOG:NOG285764
InParanoid:O80536 KO:K12126 OMA:WENGQIS PhylomeDB:O80536
ProtClustDB:CLSN2679266 Genevestigator:O80536 GermOnline:AT1G09530
Uniprot:O80536
Length = 524
Score = 115 (45.5 bits), Expect = 0.00055, P = 0.00055
Identities = 30/84 (35%), Positives = 53/84 (63%)
Query: 61 SEDKRASDENLMAMKTRIVNKPGQGNRVASRSPLQAQEHVIAERKRREKMNQQFIALSAV 120
SED +E+ K ++ G G++ SRS A+ H ++ER+RR+++N++ AL +
Sbjct: 316 SED--VEEESGDGRKEAGPSRTGLGSK-RSRS---AEVHNLSERRRRDRINEKMRALQEL 369
Query: 121 IPGIKQMNKASVLEGTIKHLKELQ 144
IP +++KAS+L+ I++LK LQ
Sbjct: 370 IPNCNKVDKASMLDEAIEYLKSLQ 393
>UNIPROTKB|Q336V8 [details] [associations]
symbol:Os10g0544200 "Os10g0544200 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0003677 EMBL:DP000086 EMBL:AP008216
EMBL:CM000147 Gene3D:4.10.280.10 SUPFAM:SSF47459 eggNOG:NOG245311
EMBL:AK063669 RefSeq:NP_001065200.1 UniGene:Os.46563
EnsemblPlants:LOC_Os10g39750.1 GeneID:4349271 KEGG:osa:4349271
ProtClustDB:CLSN2693493 Uniprot:Q336V8
Length = 380
Score = 113 (44.8 bits), Expect = 0.00056, P = 0.00056
Identities = 22/58 (37%), Positives = 40/58 (68%)
Query: 93 PLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKELQERGKKL 150
P ++++AER+RR+++N + L +V+P I +M++ S+L TI ++KEL +R K L
Sbjct: 191 PGAPSKNLMAERRRRKRLNDRLSMLRSVVPRISKMDRTSILGDTIGYVKELMDRIKNL 248
>TAIR|locus:4010713916 [details] [associations]
symbol:AT4G28815 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
EMBL:AL161573 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL035353
PIR:H85335 PIR:T04518 EMBL:AJ577586 IPI:IPI00530422
RefSeq:NP_001078463.1 UniGene:At.71260 ProteinModelPortal:Q7XHI7
SMR:Q7XHI7 EnsemblPlants:AT4G28815.1 GeneID:5008171
KEGG:ath:AT4G28815 TAIR:At4g28815 eggNOG:NOG83291 PhylomeDB:Q7XHI7
Genevestigator:Q7XHI7 Uniprot:Q7XHI7
Length = 307
Score = 111 (44.1 bits), Expect = 0.00064, P = 0.00064
Identities = 25/71 (35%), Positives = 43/71 (60%)
Query: 83 GQGNRVASRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKE 142
G +R SR+ A+ H +AER+RREK+N++ L +IP + K S+LE I+++K
Sbjct: 142 GSTSRKRSRA---AEMHNLAERRRREKINERMKTLQQLIPRCNKSTKVSMLEDVIEYVKS 198
Query: 143 LQERGKKLVEH 153
L+ + + + H
Sbjct: 199 LEMQINQFMPH 209
>UNIPROTKB|Q69Y51 [details] [associations]
symbol:P0698A06.26-2 "Putative bHLH transcription factor
PTF1" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 InterPro:IPR024097
InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459
PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:AP003514
ProteinModelPortal:Q69Y51 EnsemblPlants:LOC_Os06g09370.3
Gramene:Q69Y51 HOGENOM:HOG000241730 Uniprot:Q69Y51
Length = 401
Score = 112 (44.5 bits), Expect = 0.00080, P = 0.00080
Identities = 28/85 (32%), Positives = 49/85 (57%)
Query: 87 RVASRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKELQER 146
R +R H IAER RREK++++ L ++P + +KAS+L+ I ++K LQ +
Sbjct: 238 RTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQLQ 297
Query: 147 GKKLVEHTKRKAPESVVSVKRSQQT 171
K++ ++ AP +V+ + R QT
Sbjct: 298 -VKVLSMSRLGAPGAVLPLLRESQT 321
>TAIR|locus:2155725 [details] [associations]
symbol:bHLH093 "AT5G65640" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0007275
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB026639 HOGENOM:HOG000029066 EMBL:AF488621 EMBL:BT025665
EMBL:AK229018 EMBL:AY085134 IPI:IPI00533579 IPI:IPI00785991
RefSeq:NP_001078801.1 RefSeq:NP_569014.1 UniGene:At.28897
ProteinModelPortal:Q9LSL1 SMR:Q9LSL1 EnsemblPlants:AT5G65640.1
GeneID:836690 KEGG:ath:AT5G65640 TAIR:At5g65640 eggNOG:NOG245311
InParanoid:Q9LSL1 OMA:PLMESDQ PhylomeDB:Q9LSL1
ProtClustDB:CLSN2686406 Genevestigator:Q9LSL1 Uniprot:Q9LSL1
Length = 351
Score = 111 (44.1 bits), Expect = 0.00083, P = 0.00083
Identities = 23/70 (32%), Positives = 47/70 (67%)
Query: 83 GQGNRVASRSPLQAQ--EHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHL 140
G+ N+ S+ L+ Q ++++AER+RR+++N + L +++P I +M++ S+L I ++
Sbjct: 162 GETNKKKSKK-LEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDAIDYM 220
Query: 141 KELQERGKKL 150
KEL ++ KL
Sbjct: 221 KELLDKINKL 230
>TAIR|locus:2040287 [details] [associations]
symbol:BHLH100 "basic helix-loop-helix protein 100"
species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0010106 "cellular response to iron
ion starvation" evidence=IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0055072 "iron ion homeostasis"
evidence=IGI] InterPro:IPR011598 InterPro:IPR015660 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 PANTHER:PTHR13935 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0009414
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AC005662 GO:GO:0055072 HSSP:P61244 EMBL:AY074635 EMBL:AF488626
IPI:IPI00522524 IPI:IPI00548751 PIR:E84839 RefSeq:NP_181657.1
RefSeq:NP_850349.1 UniGene:At.37027 ProteinModelPortal:Q9ZVB5
SMR:Q9ZVB5 EnsemblPlants:AT2G41240.1 GeneID:818723
KEGG:ath:AT2G41240 TAIR:At2g41240 eggNOG:NOG256140
HOGENOM:HOG000238662 InParanoid:Q9ZVB5 OMA:HNASERE PhylomeDB:Q9ZVB5
ProtClustDB:CLSN2683761 Genevestigator:Q9ZVB5 Uniprot:Q9ZVB5
Length = 242
Score = 108 (43.1 bits), Expect = 0.00085, P = 0.00085
Identities = 36/154 (23%), Positives = 75/154 (48%)
Query: 80 NKPGQGNRVASRSPLQAQE--HVIAERKRREKMNQQFIALSAVIPGIKQMNKASV---LE 134
N + NR +P+ ++ H +ER+RR+K+N F +L + +P Q K SV +
Sbjct: 45 NVSSENNRTLLDNPVVMKKLNHNASERERRKKINTMFSSLRSCLPPTNQTKKLSVSATVS 104
Query: 135 GTIKHLKELQERGKKLVEHTKR-----KAPESVVSVKRSQQTLPDIV--------VRVSD 181
+K++ ELQE+ KKL++ + +V ++ ++ + R+S+
Sbjct: 105 QALKYIPELQEQVKKLMKKKEELSFQISGQRDLVYTDQNSKSEEGVTSYASTVSSTRLSE 164
Query: 182 NNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINS 215
V+++I + N++S +E+ LV++ +
Sbjct: 165 TEVMVQISSLQTEKCSFGNVLSGVEEDGLVLVGA 198
>UNIPROTKB|Q5VRS4 [details] [associations]
symbol:OSJNBa0015I14.14 "Basic helix-loop-helix protein
SPATULA-like" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0006355 EMBL:CM000143
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:AP002536 KEGG:dosa:Os06t0164400-01
Uniprot:Q5VRS4
Length = 315
Score = 110 (43.8 bits), Expect = 0.00088, P = 0.00088
Identities = 24/62 (38%), Positives = 44/62 (70%)
Query: 83 GQGNRVASRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKE 142
G G++ SR+ A+ H ++E++RR K+N++ AL ++IP + +KAS+L+ I++LK+
Sbjct: 96 GSGSK-RSRA---AEVHNLSEKRRRSKINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQ 151
Query: 143 LQ 144
LQ
Sbjct: 152 LQ 153
>TAIR|locus:2046198 [details] [associations]
symbol:FRU "AT2G28160" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010039 "response to iron ion" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0034756 "regulation of iron ion
transport" evidence=IMP] [GO:0071281 "cellular response to iron
ion" evidence=IEP] [GO:0071369 "cellular response to ethylene
stimulus" evidence=IEP] [GO:0071732 "cellular response to nitric
oxide" evidence=IEP] [GO:0000041 "transition metal ion transport"
evidence=RCA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0071281 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
EMBL:AC005851 GO:GO:0071732 Gene3D:4.10.280.10 SUPFAM:SSF47459
GO:GO:0071369 EMBL:AF488570 EMBL:BT026446 IPI:IPI00547189
PIR:E84681 RefSeq:NP_850114.1 UniGene:At.43510
ProteinModelPortal:Q0V7X4 SMR:Q0V7X4 IntAct:Q0V7X4 STRING:Q0V7X4
PaxDb:Q0V7X4 PRIDE:Q0V7X4 EnsemblPlants:AT2G28160.1 GeneID:817362
KEGG:ath:AT2G28160 TAIR:At2g28160 eggNOG:NOG236355
HOGENOM:HOG000006047 InParanoid:Q0V7X4 OMA:NLKLWIT PhylomeDB:Q0V7X4
ProtClustDB:CLSN2690963 Genevestigator:Q0V7X4 GO:GO:0034756
Uniprot:Q0V7X4
Length = 318
Score = 110 (43.8 bits), Expect = 0.00089, P = 0.00089
Identities = 20/51 (39%), Positives = 37/51 (72%)
Query: 100 VIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKELQERGKKL 150
+I+ER+RR +M + AL +++P I +M+KAS++ + +++ELQ + KKL
Sbjct: 133 LISERRRRGRMKDKLYALRSLVPNITKMDKASIVGDAVLYVQELQSQAKKL 183
>UNIPROTKB|F1PZY3 [details] [associations]
symbol:ARNTL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0000982 "RNA polymerase II
core promoter proximal region sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0004871 "signal
transducer activity" evidence=IEA] InterPro:IPR000014
InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
SMART:SM00353 InterPro:IPR001610 GO:GO:0005737 GO:GO:0003677
GO:GO:0007623 GO:GO:0045944 GO:GO:0005667 GO:GO:0004871
GO:GO:0000982 SMART:SM00086 TIGRFAMs:TIGR00229
GeneTree:ENSGT00650000092935 Gene3D:4.10.280.10 SUPFAM:SSF47459
OMA:IPQCNPM EMBL:AAEX03015178 Ensembl:ENSCAFT00000017664
Uniprot:F1PZY3
Length = 624
Score = 114 (45.2 bits), Expect = 0.00090, P = 0.00090
Identities = 43/179 (24%), Positives = 80/179 (44%)
Query: 49 SNPNSEYYCTIKSEDKRASDENLMAMKTRIVNKPGQGNRVASRSPL----QAQE-HVIAE 103
S+P+ T K +K + + + TRI G+R+ Q +E H E
Sbjct: 46 SDPSQSGIMTEKMVEKLSKNPFTYLLSTRIEISASSGSRMEDGEQQVKMNQLREAHSQTE 105
Query: 104 RKRREKMNQQFIALSAVIPGI----KQMNKASVLEGTIKHLKELQERGKKLVEHTKRKAP 159
++RR+KMN LSA+IP ++++K +VL ++HLK L+ R P
Sbjct: 106 KRRRDKMNNLIEELSAMIPQCNPVPRKLDKLTVLRMAVQHLKSLKGMTSSYAGDNYR--P 163
Query: 160 ESVVSVKRSQQTLPDIVVRVSDNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTI 218
+ L ++++ ++ + + + CE+ I F+S VS+I + R++
Sbjct: 164 SFI-----QDNELRHLILKTAEGFLFV-VGCERGKILFVSKSVSKILNYDQASLTGRSL 216
>UNIPROTKB|Q6Z7E7 [details] [associations]
symbol:P0020C11.18 "Putative bHLH transcription factor
PTF1" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 InterPro:IPR024097
InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459
HSSP:P36956 PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:CM000139
EMBL:AP004865 EMBL:AK241924 EnsemblPlants:LOC_Os02g35660.1
OMA:TTAMQYL Uniprot:Q6Z7E7
Length = 524
Score = 113 (44.8 bits), Expect = 0.00091, P = 0.00091
Identities = 30/85 (35%), Positives = 48/85 (56%)
Query: 87 RVASRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKELQER 146
RV +R H IAER RREK++ + L ++P + NKAS+L+ I ++K LQ +
Sbjct: 313 RVRARRGQATDPHSIAERLRREKISDRMKDLQELVPNSNKTNKASMLDEIIDYVKFLQLQ 372
Query: 147 GKKLVEHTKRKAPESVVSVKRSQQT 171
K++ ++ A E+VV + QT
Sbjct: 373 -VKVLSMSRLGAAEAVVPLLTETQT 396
>UNIPROTKB|Q5KQG3 [details] [associations]
symbol:OSJNBb0086G17.12 "Putative uncharacterized protein
OSJNBb0086G17.12" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238962 OMA:SHIAVER EMBL:AC144455
ProteinModelPortal:Q5KQG3 EnsemblPlants:LOC_Os05g51820.1
Gramene:Q5KQG3 Uniprot:Q5KQG3
Length = 227
Score = 94 (38.1 bits), Expect = 0.00093, Sum P(2) = 0.00093
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 99 HVIAERKRREKMNQQFIALSAVIPG--IKQMNKASVLEGTIKHLKELQERGKKLVEHTKR 156
H+ ER RR +MN L ++ P IK+ ++AS++ G I +KELQ + L KR
Sbjct: 3 HIAVERNRRRQMNDHLKVLRSLTPAFYIKRGDQASIIGGAIDFIKELQTLLQSLEAQKKR 62
Query: 157 K 157
+
Sbjct: 63 R 63
Score = 49 (22.3 bits), Expect = 0.00093, Sum P(2) = 0.00093
Identities = 18/73 (24%), Positives = 36/73 (49%)
Query: 172 LPDIVVRVSDNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVA 231
+ D+ R+S NVL+R + I++ +E LHL V++ + L + V
Sbjct: 137 MADVEARISGANVLLRTLSRRAPP---VRIIALLESLHLEVLHLNITTMDDTVL-YSFVL 192
Query: 232 QMEVEFCLTVKEL 244
++ ++ L+V +L
Sbjct: 193 KIGLDCHLSVDDL 205
>TAIR|locus:2077680 [details] [associations]
symbol:PIL6 "AT3G59060" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0009585 "red,
far-red light phototransduction" evidence=IMP] [GO:0009693
"ethylene biosynthetic process" evidence=IMP] [GO:0010600
"regulation of auxin biosynthetic process" evidence=IDA]
[GO:0010928 "regulation of auxin mediated signaling pathway"
evidence=IDA] [GO:0000096 "sulfur amino acid metabolic process"
evidence=RCA] [GO:0006546 "glycine catabolic process" evidence=RCA]
[GO:0006636 "unsaturated fatty acid biosynthetic process"
evidence=RCA] [GO:0006733 "oxidoreduction coenzyme metabolic
process" evidence=RCA] [GO:0006766 "vitamin metabolic process"
evidence=RCA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0008652 "cellular amino acid biosynthetic process"
evidence=RCA] [GO:0009072 "aromatic amino acid family metabolic
process" evidence=RCA] [GO:0009073 "aromatic amino acid family
biosynthetic process" evidence=RCA] [GO:0009106 "lipoate metabolic
process" evidence=RCA] [GO:0009108 "coenzyme biosynthetic process"
evidence=RCA] [GO:0009117 "nucleotide metabolic process"
evidence=RCA] [GO:0009630 "gravitropism" evidence=RCA] [GO:0009684
"indoleacetic acid biosynthetic process" evidence=RCA] [GO:0009695
"jasmonic acid biosynthetic process" evidence=RCA] [GO:0009965
"leaf morphogenesis" evidence=RCA] [GO:0010017 "red or far-red
light signaling pathway" evidence=RCA] [GO:0015995 "chlorophyll
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] [GO:0019748 "secondary metabolic process"
evidence=RCA] [GO:0019761 "glucosinolate biosynthetic process"
evidence=RCA] [GO:0030003 "cellular cation homeostasis"
evidence=RCA] [GO:0030154 "cell differentiation" evidence=RCA]
[GO:0044272 "sulfur compound biosynthetic process" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0009693 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
EMBL:AL163527 GO:GO:0009585 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000240264 HSSP:P22415 GO:GO:0010928
ProtClustDB:CLSN2680212 GO:GO:0010600 EMBL:AF488598 EMBL:AB103112
EMBL:AY081271 EMBL:BT000049 IPI:IPI00541791 IPI:IPI00543835
IPI:IPI00890365 PIR:T47788 RefSeq:NP_001030889.1
RefSeq:NP_001030890.1 RefSeq:NP_191465.3 RefSeq:NP_851021.1
UniGene:At.43437 UniGene:At.67329 ProteinModelPortal:Q84LH8
SMR:Q84LH8 IntAct:Q84LH8 STRING:Q84LH8 EnsemblPlants:AT3G59060.2
EnsemblPlants:AT3G59060.3 EnsemblPlants:AT3G59060.4 GeneID:825075
KEGG:ath:AT3G59060 TAIR:At3g59060 eggNOG:NOG259206
InParanoid:Q84LH8 OMA:SHCGSNQ PhylomeDB:Q84LH8
Genevestigator:Q84LH8 Uniprot:Q84LH8
Length = 444
Score = 112 (44.5 bits), Expect = 0.00094, P = 0.00094
Identities = 29/84 (34%), Positives = 48/84 (57%)
Query: 62 EDKRASDENLMAMKTRIV-NKPGQGNRVASRSPLQAQEHVIAERKRREKMNQQFIALSAV 120
E SD L + + + NK Q + RS A+ H ++ER+RR+++N++ AL +
Sbjct: 224 ESVSQSDIGLTSTDDQTMGNKSSQRSGSTRRSRA-AEVHNLSERRRRDRINERMKALQEL 282
Query: 121 IPGIKQMNKASVLEGTIKHLKELQ 144
IP + +KAS+L+ I +LK LQ
Sbjct: 283 IPHCSRTDKASILDEAIDYLKSLQ 306
>UNIPROTKB|Q8S0C6 [details] [associations]
symbol:B1112D09.6 "Uncharacterized protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:CM000138
HSSP:P01106 EMBL:AP003432 EMBL:AK106333
EnsemblPlants:LOC_Os01g39330.1 eggNOG:NOG273636 OMA:LNDSFHT
Uniprot:Q8S0C6
Length = 454
Score = 112 (44.5 bits), Expect = 0.00097, P = 0.00097
Identities = 35/119 (29%), Positives = 60/119 (50%)
Query: 81 KPGQGNR------VASRSPLQAQE--HVIAERKRREKMNQQFIALSAVIPGIKQMNKASV 132
KPG G R A+ S + + H+++ERKRREK+N F L +++P + +K +V
Sbjct: 241 KPGGGGRGRQQEEAAAASATNSSQLYHMMSERKRREKLNDSFHTLRSLLPPCSKKDKTTV 300
Query: 133 LEGTIKHLK-------ELQERGKKLVEHTKRK--APESVVSVKRSQQTLPDIVVRVSDN 182
L K+LK EL+ KL +H A ++ + +R+QQ + + +D+
Sbjct: 301 LINAAKYLKSLETEITELEGTNTKLEKHIAGGGGAADAAMRARRAQQRAKVQISKAADS 359
>UNIPROTKB|Q7FA23 [details] [associations]
symbol:OSJNBa0058K23.6 "Os04g0618600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P36956
PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:AP008210
EMBL:CM000141 EMBL:AL662970 RefSeq:NP_001053893.1 UniGene:Os.4548
EnsemblPlants:LOC_Os04g52770.1 GeneID:4337015 KEGG:osa:4337015
eggNOG:NOG275283 OMA:RSAEFHN ProtClustDB:CLSN2695118 Uniprot:Q7FA23
Length = 181
Score = 104 (41.7 bits), Expect = 0.0010, P = 0.0010
Identities = 33/126 (26%), Positives = 65/126 (51%)
Query: 90 SRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKELQERGKK 149
+R A+ H +ER+RR+++N++ AL ++P + +K S+L+ I +LK LQ + +
Sbjct: 9 TRRSRSAEFHNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSLQLQLQM 68
Query: 150 LVEHTKRKAPESVVSVKRSQQTL---PDIV--VRVSDNNVLIRIHCEKQNIGFI-SNIVS 203
LV K AP +++ + P + +R S+ H +Q + S+ +S
Sbjct: 69 LVMG-KGMAPVVPPELQQYMHYITADPSQIPPIRPSEPRPFQITHATQQRQSNVESDFLS 127
Query: 204 EIEKLH 209
+++ LH
Sbjct: 128 QMQNLH 133
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.130 0.352 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 259 259 0.00088 114 3 11 22 0.48 33
32 0.49 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 74
No. of states in DFA: 574 (61 KB)
Total size of DFA: 162 KB (2097 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.85u 0.10s 27.95t Elapsed: 00:00:02
Total cpu time: 27.86u 0.10s 27.96t Elapsed: 00:00:02
Start: Sat May 11 00:31:36 2013 End: Sat May 11 00:31:38 2013