Query 038298
Match_columns 259
No_of_seqs 241 out of 1180
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 09:35:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038298.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038298hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.4 3.1E-13 6.6E-18 95.4 5.8 53 95-147 4-59 (60)
2 PF00010 HLH: Helix-loop-helix 99.4 4.6E-13 1E-17 93.8 5.4 49 96-144 2-55 (55)
3 smart00353 HLH helix loop heli 99.3 1.4E-12 3.1E-17 90.1 5.5 49 100-148 1-52 (53)
4 KOG1318 Helix loop helix trans 98.9 4.6E-09 1E-13 100.5 10.2 66 87-152 225-294 (411)
5 KOG1319 bHLHZip transcription 98.6 8.9E-08 1.9E-12 82.7 6.4 61 95-155 62-129 (229)
6 cd04897 ACT_ACR_3 ACT domain-c 98.6 8.3E-07 1.8E-11 66.5 10.1 70 185-256 3-72 (75)
7 cd04895 ACT_ACR_1 ACT domain-c 98.4 2.4E-06 5.2E-11 63.6 9.6 67 185-253 3-69 (72)
8 cd04896 ACT_ACR-like_3 ACT dom 98.4 3.8E-06 8.2E-11 63.0 9.7 69 185-256 2-72 (75)
9 cd04927 ACT_ACR-like_2 Second 98.3 9.8E-06 2.1E-10 60.4 10.2 68 184-254 1-69 (76)
10 cd04900 ACT_UUR-like_1 ACT dom 98.3 1.5E-05 3.3E-10 58.4 10.5 69 185-255 3-72 (73)
11 cd04925 ACT_ACR_2 ACT domain-c 98.2 2.1E-05 4.5E-10 58.1 10.3 71 185-257 2-73 (74)
12 KOG3561 Aryl-hydrocarbon recep 98.2 1.3E-06 2.8E-11 89.9 4.8 52 95-146 20-75 (803)
13 KOG4304 Transcriptional repres 98.2 9.5E-07 2.1E-11 80.2 3.3 55 95-149 32-94 (250)
14 KOG2483 Upstream transcription 98.1 7.2E-06 1.6E-10 73.6 7.7 62 93-154 57-121 (232)
15 cd04899 ACT_ACR-UUR-like_2 C-t 97.9 0.00014 3E-09 52.0 9.9 68 185-255 2-69 (70)
16 KOG0561 bHLH transcription fac 97.8 2E-05 4.4E-10 72.7 3.5 56 96-151 61-118 (373)
17 KOG2588 Predicted DNA-binding 97.6 4.1E-05 8.8E-10 79.6 4.2 60 94-153 275-335 (953)
18 PRK05007 PII uridylyl-transfer 97.6 0.00043 9.3E-09 73.0 10.9 83 172-257 795-879 (884)
19 cd04926 ACT_ACR_4 C-terminal 97.5 0.001 2.3E-08 48.6 9.5 68 184-254 2-69 (72)
20 KOG4029 Transcription factor H 97.5 0.00014 2.9E-09 65.0 4.5 63 92-154 106-172 (228)
21 cd04873 ACT_UUR-ACR-like ACT d 97.4 0.0032 6.9E-08 44.4 10.0 68 185-255 2-69 (70)
22 PLN03217 transcription factor 97.4 0.00038 8.2E-09 53.2 5.3 50 108-157 20-75 (93)
23 KOG3960 Myogenic helix-loop-he 97.4 0.00049 1.1E-08 62.3 6.8 60 96-155 119-180 (284)
24 PRK01759 glnD PII uridylyl-tra 97.3 0.0013 2.8E-08 69.2 10.5 83 172-257 770-854 (854)
25 PRK00275 glnD PII uridylyl-tra 97.3 0.002 4.3E-08 68.1 11.3 83 172-256 801-885 (895)
26 PF13740 ACT_6: ACT domain; PD 97.2 0.0093 2E-07 44.0 11.2 64 183-255 2-65 (76)
27 cd04928 ACT_TyrKc Uncharacteri 97.2 0.0051 1.1E-07 45.3 9.6 64 185-252 3-67 (68)
28 PRK04374 PII uridylyl-transfer 97.2 0.0036 7.7E-08 66.1 11.6 83 172-257 783-867 (869)
29 PRK05092 PII uridylyl-transfer 97.1 0.0038 8.2E-08 66.2 11.3 83 172-256 830-914 (931)
30 PF01842 ACT: ACT domain; Int 97.0 0.013 2.9E-07 40.6 10.1 37 185-222 2-38 (66)
31 PF13291 ACT_4: ACT domain; PD 96.8 0.0098 2.1E-07 43.8 8.3 53 183-236 6-59 (80)
32 TIGR01693 UTase_glnD [Protein- 96.8 0.0086 1.9E-07 62.9 10.8 81 173-256 767-849 (850)
33 PRK03381 PII uridylyl-transfer 96.8 0.01 2.2E-07 61.8 11.0 68 182-253 706-773 (774)
34 cd04893 ACT_GcvR_1 ACT domains 96.8 0.024 5.2E-07 41.9 10.0 62 184-250 2-63 (77)
35 PRK03059 PII uridylyl-transfer 96.8 0.01 2.3E-07 62.5 10.9 80 173-257 774-855 (856)
36 TIGR01693 UTase_glnD [Protein- 96.6 0.016 3.4E-07 61.0 11.0 83 172-256 655-740 (850)
37 COG2844 GlnD UTP:GlnB (protein 96.5 0.013 2.7E-07 61.0 9.2 83 171-256 777-861 (867)
38 cd04887 ACT_MalLac-Enz ACT_Mal 96.5 0.03 6.6E-07 40.2 8.7 61 186-249 2-62 (74)
39 PRK05007 PII uridylyl-transfer 96.5 0.027 5.8E-07 59.6 11.7 82 172-256 688-772 (884)
40 PRK01759 glnD PII uridylyl-tra 96.4 0.028 6.1E-07 59.3 11.6 83 172-257 664-749 (854)
41 cd04872 ACT_1ZPV ACT domain pr 96.4 0.023 4.9E-07 42.9 8.0 66 184-252 2-67 (88)
42 PRK03381 PII uridylyl-transfer 96.4 0.034 7.4E-07 58.0 11.7 79 173-253 588-667 (774)
43 cd04875 ACT_F4HF-DF N-terminal 96.3 0.036 7.7E-07 40.3 8.5 65 185-252 1-67 (74)
44 PRK00194 hypothetical protein; 96.2 0.033 7.2E-07 42.0 8.1 65 183-250 3-67 (90)
45 cd04869 ACT_GcvR_2 ACT domains 96.1 0.083 1.8E-06 38.6 9.6 65 186-253 2-71 (81)
46 cd04870 ACT_PSP_1 CT domains f 95.9 0.1 2.2E-06 38.2 8.9 64 185-252 1-64 (75)
47 cd04888 ACT_PheB-BS C-terminal 95.8 0.065 1.4E-06 38.5 7.5 63 185-249 2-64 (76)
48 PRK03059 PII uridylyl-transfer 95.8 0.086 1.9E-06 55.7 11.3 81 173-256 666-749 (856)
49 cd04886 ACT_ThrD-II-like C-ter 95.7 0.11 2.3E-06 36.2 8.2 62 186-250 1-66 (73)
50 PRK00275 glnD PII uridylyl-tra 95.6 0.093 2E-06 55.7 10.8 73 182-256 703-777 (895)
51 PRK04435 hypothetical protein; 95.4 0.12 2.6E-06 43.2 8.9 70 179-250 65-134 (147)
52 PRK05092 PII uridylyl-transfer 95.4 0.15 3.2E-06 54.4 11.4 82 173-256 720-804 (931)
53 cd04880 ACT_AAAH-PDT-like ACT 95.3 0.089 1.9E-06 38.2 6.8 63 187-250 3-66 (75)
54 cd04881 ACT_HSDH-Hom ACT_HSDH_ 95.1 0.13 2.8E-06 36.3 7.1 63 184-249 1-64 (79)
55 cd04894 ACT_ACR-like_1 ACT dom 94.5 0.22 4.7E-06 36.3 6.8 40 185-225 2-41 (69)
56 cd04905 ACT_CM-PDT C-terminal 94.4 0.25 5.3E-06 36.4 7.3 50 185-235 3-52 (80)
57 cd02116 ACT ACT domains are co 94.4 0.33 7.1E-06 30.5 7.2 34 186-220 1-34 (60)
58 cd04877 ACT_TyrR N-terminal AC 94.2 0.28 6E-06 35.6 7.1 46 185-235 2-47 (74)
59 cd04876 ACT_RelA-SpoT ACT dom 94.2 0.49 1.1E-05 31.5 8.0 49 186-235 1-49 (71)
60 PRK08577 hypothetical protein; 94.1 0.63 1.4E-05 38.1 9.8 66 182-249 55-121 (136)
61 cd04884 ACT_CBS C-terminal ACT 93.9 0.41 8.9E-06 34.4 7.5 63 186-251 2-66 (72)
62 KOG3910 Helix loop helix trans 93.8 0.047 1E-06 53.9 2.9 63 88-150 519-585 (632)
63 cd04878 ACT_AHAS N-terminal AC 93.7 0.66 1.4E-05 32.0 8.2 61 185-249 2-63 (72)
64 PRK04374 PII uridylyl-transfer 93.7 0.41 8.9E-06 50.8 10.0 71 181-256 688-759 (869)
65 cd04931 ACT_PAH ACT domain of 93.7 0.6 1.3E-05 36.0 8.3 51 184-235 15-65 (90)
66 cd04874 ACT_Af1403 N-terminal 93.5 0.85 1.8E-05 31.5 8.4 60 185-249 2-61 (72)
67 KOG4447 Transcription factor T 92.9 0.074 1.6E-06 45.1 2.4 53 95-147 78-132 (173)
68 PRK13011 formyltetrahydrofolat 92.6 1.1 2.3E-05 41.6 9.9 66 183-251 7-73 (286)
69 TIGR00655 PurU formyltetrahydr 92.5 0.94 2E-05 41.9 9.4 69 185-256 2-72 (280)
70 cd04903 ACT_LSD C-terminal ACT 92.1 1.2 2.5E-05 30.7 7.5 59 186-250 2-61 (71)
71 PRK07334 threonine dehydratase 91.9 1.8 3.8E-05 41.7 10.8 65 183-250 326-394 (403)
72 cd04909 ACT_PDH-BS C-terminal 91.9 1.2 2.7E-05 31.3 7.5 35 185-220 3-37 (69)
73 cd04904 ACT_AAAH ACT domain of 91.8 0.9 2E-05 33.2 6.9 48 187-235 4-51 (74)
74 KOG3560 Aryl-hydrocarbon recep 91.5 0.16 3.5E-06 50.8 3.2 40 102-141 32-75 (712)
75 cd04882 ACT_Bt0572_2 C-termina 91.4 1.2 2.6E-05 30.5 6.9 56 186-250 2-59 (65)
76 PRK13010 purU formyltetrahydro 91.3 1.3 2.8E-05 41.1 8.9 66 183-251 9-77 (289)
77 cd04885 ACT_ThrD-I Tandem C-te 91.2 1.3 2.9E-05 31.6 7.0 60 187-250 2-61 (68)
78 COG2844 GlnD UTP:GlnB (protein 91.1 1.5 3.3E-05 46.1 9.8 79 174-255 675-754 (867)
79 cd04879 ACT_3PGDH-like ACT_3PG 91.0 1.8 4E-05 29.5 7.5 59 186-250 2-61 (71)
80 cd04908 ACT_Bt0572_1 N-termina 90.9 2.5 5.3E-05 29.8 8.1 46 185-234 3-48 (66)
81 cd04929 ACT_TPH ACT domain of 90.8 1.4 3.1E-05 32.5 7.1 48 188-236 5-52 (74)
82 PRK06027 purU formyltetrahydro 90.6 1.9 4.1E-05 39.9 9.3 65 183-250 6-72 (286)
83 cd04883 ACT_AcuB C-terminal AC 89.6 4.7 0.0001 28.3 8.8 59 185-250 3-63 (72)
84 KOG3898 Transcription factor N 87.3 0.33 7.1E-06 44.3 1.7 54 93-146 70-126 (254)
85 PRK11895 ilvH acetolactate syn 86.6 6 0.00013 33.8 8.9 48 185-233 4-52 (161)
86 KOG3559 Transcriptional regula 86.1 0.7 1.5E-05 45.0 3.3 43 102-144 8-54 (598)
87 cd04930 ACT_TH ACT domain of t 85.8 4.1 8.9E-05 32.8 7.2 51 184-235 42-92 (115)
88 KOG3558 Hypoxia-inducible fact 85.5 0.66 1.4E-05 47.7 2.9 45 98-142 49-97 (768)
89 TIGR00119 acolac_sm acetolacta 85.1 8.1 0.00018 32.8 9.0 48 185-233 3-51 (157)
90 PRK11092 bifunctional (p)ppGpp 85.0 4.5 9.8E-05 42.1 8.8 52 184-236 627-678 (702)
91 PRK11589 gcvR glycine cleavage 84.9 2.9 6.3E-05 36.5 6.4 42 182-224 7-48 (190)
92 COG4492 PheB ACT domain-contai 84.7 6.2 0.00013 33.0 7.7 66 181-249 70-136 (150)
93 cd04889 ACT_PDH-BS-like C-term 84.5 4.9 0.00011 27.0 6.2 35 186-221 1-35 (56)
94 PRK10872 relA (p)ppGpp synthet 83.9 5.8 0.00013 41.6 9.1 52 184-236 667-719 (743)
95 cd04901 ACT_3PGDH C-terminal A 83.4 1.5 3.1E-05 30.6 3.2 57 187-250 3-59 (69)
96 KOG4395 Transcription factor A 83.1 2 4.3E-05 39.3 4.7 53 96-148 175-230 (285)
97 TIGR00691 spoT_relA (p)ppGpp s 83.0 6.1 0.00013 41.0 8.8 53 183-236 610-662 (683)
98 PRK13562 acetolactate synthase 81.9 12 0.00027 28.6 8.0 51 185-236 4-55 (84)
99 cd04906 ACT_ThrD-I_1 First of 80.9 13 0.00029 27.6 7.9 63 184-250 2-64 (85)
100 PRK08198 threonine dehydratase 80.7 13 0.00028 35.7 9.6 68 180-250 324-395 (404)
101 COG0788 PurU Formyltetrahydrof 79.9 10 0.00022 35.2 8.1 65 182-250 6-73 (287)
102 PRK11589 gcvR glycine cleavage 79.5 15 0.00031 32.2 8.7 65 184-251 96-165 (190)
103 cd04902 ACT_3PGDH-xct C-termin 78.6 8.9 0.00019 26.7 6.0 58 186-250 2-61 (73)
104 PF05088 Bac_GDH: Bacterial NA 77.8 18 0.0004 41.0 10.7 74 182-256 488-565 (1528)
105 PRK06737 acetolactate synthase 76.5 22 0.00047 26.6 7.7 47 185-232 4-51 (76)
106 TIGR01127 ilvA_1Cterm threonin 76.5 18 0.00039 34.3 9.1 67 181-250 303-373 (380)
107 PRK06382 threonine dehydratase 76.4 15 0.00033 35.3 8.7 67 181-250 328-398 (406)
108 PRK11152 ilvM acetolactate syn 75.9 21 0.00046 26.7 7.5 47 184-231 4-51 (76)
109 cd04937 ACT_AKi-DapG-BS_2 ACT 73.9 24 0.00053 24.5 7.2 23 192-215 13-35 (64)
110 cd04922 ACT_AKi-HSDH-ThrA_2 AC 73.4 26 0.00056 23.8 7.6 59 185-252 3-64 (66)
111 PRK08178 acetolactate synthase 72.3 33 0.00072 26.9 8.1 50 182-232 7-57 (96)
112 cd04892 ACT_AK-like_2 ACT doma 71.5 26 0.00056 23.0 7.5 33 185-218 2-37 (65)
113 COG3830 ACT domain-containing 71.4 11 0.00023 29.4 5.0 66 184-252 4-69 (90)
114 cd04920 ACT_AKiii-DAPDC_2 ACT 66.9 22 0.00048 24.9 5.6 51 192-253 12-62 (63)
115 cd04915 ACT_AK-Ectoine_2 ACT d 66.8 32 0.0007 24.3 6.5 52 193-253 14-65 (66)
116 COG0317 SpoT Guanosine polypho 66.2 42 0.00091 35.1 9.6 52 184-236 628-679 (701)
117 PRK08526 threonine dehydratase 65.9 38 0.00081 32.8 8.8 66 181-249 324-393 (403)
118 PRK11899 prephenate dehydratas 65.5 29 0.00063 32.1 7.6 53 183-236 194-246 (279)
119 cd04918 ACT_AK1-AT_2 ACT domai 65.3 33 0.00071 24.0 6.3 52 192-252 12-63 (65)
120 CHL00100 ilvH acetohydroxyacid 65.2 42 0.00091 29.0 8.1 48 184-232 3-51 (174)
121 PRK15385 magnesium transport p 64.7 60 0.0013 29.3 9.2 65 182-248 141-209 (225)
122 PRK11898 prephenate dehydratas 64.3 22 0.00048 32.8 6.6 52 184-236 197-249 (283)
123 TIGR01268 Phe4hydrox_tetr phen 63.4 24 0.00052 34.9 6.9 66 184-250 17-82 (436)
124 PRK00227 glnD PII uridylyl-tra 61.5 48 0.001 34.7 9.1 70 181-253 544-614 (693)
125 PF02120 Flg_hook: Flagellar h 60.5 31 0.00067 25.1 5.7 46 174-219 28-78 (85)
126 KOG3582 Mlx interactors and re 60.0 2.3 4.9E-05 44.0 -0.8 61 94-154 650-715 (856)
127 COG0077 PheA Prephenate dehydr 58.4 63 0.0014 30.1 8.4 53 183-236 194-246 (279)
128 PRK10622 pheA bifunctional cho 57.9 66 0.0014 31.1 8.8 50 186-236 300-349 (386)
129 PF13710 ACT_5: ACT domain; PD 57.7 65 0.0014 22.8 7.9 40 193-233 2-42 (63)
130 PRK14646 hypothetical protein; 54.0 1.1E+02 0.0024 25.8 8.6 54 200-256 12-66 (155)
131 cd04924 ACT_AK-Arch_2 ACT doma 53.9 65 0.0014 21.6 7.6 24 192-216 13-36 (66)
132 KOG4447 Transcription factor T 53.8 8.4 0.00018 32.9 1.7 42 102-143 29-72 (173)
133 cd04916 ACT_AKiii-YclM-BS_2 AC 53.1 68 0.0015 21.6 7.3 32 185-217 3-37 (66)
134 PRK14637 hypothetical protein; 52.2 99 0.0021 26.0 8.0 56 195-255 8-64 (151)
135 PRK14633 hypothetical protein; 51.2 89 0.0019 26.2 7.5 52 200-256 9-60 (150)
136 TIGR02079 THD1 threonine dehyd 49.3 1.1E+02 0.0024 29.6 8.9 54 181-235 323-377 (409)
137 KOG3582 Mlx interactors and re 49.0 5.7 0.00012 41.2 0.0 61 94-157 786-851 (856)
138 COG4747 ACT domain-containing 48.8 41 0.00089 27.8 4.9 40 185-225 5-44 (142)
139 PRK14645 hypothetical protein; 47.7 1.6E+02 0.0036 24.8 8.7 54 200-256 14-68 (154)
140 TIGR01270 Trp_5_monoox tryptop 46.9 66 0.0014 32.1 6.9 50 184-234 32-82 (464)
141 TIGR01124 ilvA_2Cterm threonin 46.5 1.3E+02 0.0027 30.2 9.0 65 181-250 323-387 (499)
142 cd04907 ACT_ThrD-I_2 Second of 46.4 1.2E+02 0.0026 22.5 7.7 62 184-250 2-63 (81)
143 cd04919 ACT_AK-Hom3_2 ACT doma 44.6 97 0.0021 21.0 7.9 25 192-217 13-37 (66)
144 COG2716 GcvR Glycine cleavage 43.7 72 0.0016 27.7 5.9 66 181-249 90-160 (176)
145 PF02344 Myc-LZ: Myc leucine z 43.6 26 0.00057 22.0 2.3 20 100-119 10-29 (32)
146 PRK14634 hypothetical protein; 43.1 1.5E+02 0.0033 24.9 7.8 51 203-256 15-66 (155)
147 cd04917 ACT_AKiii-LysC-EC_2 AC 42.4 1.1E+02 0.0024 20.9 7.4 50 192-252 13-62 (64)
148 PRK12483 threonine dehydratase 42.1 1.8E+02 0.004 29.3 9.4 52 181-235 343-394 (521)
149 PF07485 DUF1529: Domain of Un 41.9 1.2E+02 0.0025 24.8 6.7 51 197-253 69-121 (123)
150 PRK08639 threonine dehydratase 41.7 1.6E+02 0.0036 28.4 8.9 68 180-250 333-401 (420)
151 PF13840 ACT_7: ACT domain ; P 41.4 51 0.0011 23.3 4.0 34 182-216 5-42 (65)
152 cd04912 ACT_AKiii-LysC-EC-like 40.5 1.4E+02 0.0029 21.4 7.2 25 191-216 12-36 (75)
153 PRK14632 hypothetical protein; 40.2 1.5E+02 0.0033 25.4 7.5 49 203-256 16-64 (172)
154 cd04923 ACT_AK-LysC-DapG-like_ 39.6 1.1E+02 0.0024 20.1 7.0 24 192-216 12-35 (63)
155 PRK07431 aspartate kinase; Pro 39.5 1.9E+02 0.0042 29.2 9.2 64 178-252 514-580 (587)
156 KOG0456 Aspartate kinase [Amin 38.7 2.3E+02 0.0049 28.2 9.0 66 183-258 393-463 (559)
157 PRK09224 threonine dehydratase 37.5 2.5E+02 0.0054 28.1 9.5 66 181-250 326-391 (504)
158 PRK14639 hypothetical protein; 37.2 2.1E+02 0.0046 23.6 7.7 52 201-256 3-54 (140)
159 cd04936 ACT_AKii-LysC-BS-like_ 36.5 1.2E+02 0.0027 19.8 7.1 24 192-216 12-35 (63)
160 TIGR00656 asp_kin_monofn aspar 36.3 2.2E+02 0.0048 27.1 8.7 64 178-252 332-398 (401)
161 COG0779 Uncharacterized protei 35.3 1.7E+02 0.0038 24.7 6.9 54 199-257 11-66 (153)
162 PLN02551 aspartokinase 35.0 2.6E+02 0.0056 28.2 9.2 68 177-253 439-508 (521)
163 PRK14647 hypothetical protein; 34.0 2.5E+02 0.0053 23.7 7.7 50 202-256 15-65 (159)
164 PF05687 DUF822: Plant protein 33.8 1.2E+02 0.0027 25.6 5.6 41 92-134 8-48 (150)
165 PRK14636 hypothetical protein; 33.7 3.1E+02 0.0067 23.6 8.5 51 203-256 13-64 (176)
166 PRK14626 hypothetical protein; 33.6 1.3E+02 0.0028 24.0 5.6 51 133-190 7-57 (110)
167 COG3978 Acetolactate synthase 33.4 2.2E+02 0.0048 21.8 6.8 37 184-221 4-40 (86)
168 PRK08210 aspartate kinase I; R 33.2 1.9E+02 0.0041 27.7 7.7 37 177-214 333-372 (403)
169 cd04890 ACT_AK-like_1 ACT doma 32.5 1.6E+02 0.0034 19.8 6.9 24 192-216 12-35 (62)
170 PLN02905 beta-amylase 32.4 63 0.0014 33.6 4.4 41 80-120 71-111 (702)
171 PF03698 UPF0180: Uncharacteri 32.1 1.1E+02 0.0024 23.2 4.7 56 197-252 9-79 (80)
172 cd04933 ACT_AK1-AT_1 ACT domai 31.4 2.2E+02 0.0047 21.1 7.6 31 185-216 3-36 (78)
173 PRK07431 aspartate kinase; Pro 31.2 2.3E+02 0.0049 28.7 8.3 66 176-252 341-409 (587)
174 COG1707 ACT domain-containing 31.1 2.3E+02 0.005 24.8 7.0 61 185-249 4-64 (218)
175 PRK00341 hypothetical protein; 30.9 1.8E+02 0.004 22.3 5.9 52 183-236 17-71 (91)
176 COG3074 Uncharacterized protei 30.8 71 0.0015 23.8 3.3 24 133-156 13-36 (79)
177 COG0527 LysC Aspartokinases [A 30.8 2.8E+02 0.0061 27.4 8.5 67 176-253 376-445 (447)
178 cd04868 ACT_AK-like ACT domain 30.7 1.4E+02 0.0031 18.8 5.6 24 193-217 13-36 (60)
179 PRK14640 hypothetical protein; 30.6 3.2E+02 0.007 22.8 8.0 51 201-256 12-63 (152)
180 PLN02705 beta-amylase 30.5 2.3E+02 0.0051 29.5 8.0 26 95-120 84-109 (681)
181 PF01709 Transcrip_reg: Transc 30.5 99 0.0021 27.8 5.0 35 186-223 167-201 (234)
182 TIGR02865 spore_II_E stage II 30.2 1.3E+02 0.0027 31.9 6.4 60 197-256 466-525 (764)
183 PHA02568 J baseplate assembly 30.0 3.7E+02 0.0081 25.1 8.9 76 181-256 165-244 (300)
184 cd04921 ACT_AKi-HSDH-ThrA-like 29.9 2E+02 0.0044 20.2 7.6 26 192-218 13-38 (80)
185 PRK00907 hypothetical protein; 29.7 1.7E+02 0.0037 22.6 5.5 53 182-236 16-72 (92)
186 cd00554 MECDP_synthase MECDP_s 29.4 2.2E+02 0.0048 24.1 6.6 47 196-257 74-120 (153)
187 PLN02550 threonine dehydratase 29.1 2.6E+02 0.0056 28.8 8.2 64 182-250 416-479 (591)
188 PRK06349 homoserine dehydrogen 29.0 4E+02 0.0086 25.9 9.2 35 182-217 347-381 (426)
189 PRK00153 hypothetical protein; 29.0 1.5E+02 0.0032 23.1 5.2 50 133-189 5-54 (104)
190 cd04913 ACT_AKii-LysC-BS-like_ 28.4 1.9E+02 0.0041 19.5 7.5 24 191-215 10-33 (75)
191 PF09849 DUF2076: Uncharacteri 28.1 1.4E+02 0.0031 27.2 5.6 16 140-155 57-72 (247)
192 TIGR01269 Tyr_3_monoox tyrosin 27.9 2.3E+02 0.005 28.3 7.3 53 194-250 49-106 (457)
193 cd04891 ACT_AK-LysC-DapG-like_ 27.8 1.7E+02 0.0037 18.7 6.3 26 191-217 9-34 (61)
194 PRK09977 putative Mg(2+) trans 27.7 4.4E+02 0.0095 23.5 9.2 63 181-249 142-204 (215)
195 PRK00084 ispF 2-C-methyl-D-ery 27.4 2.3E+02 0.005 24.2 6.4 47 196-257 77-123 (159)
196 PRK14623 hypothetical protein; 27.4 2.9E+02 0.0062 22.0 6.5 26 133-158 3-28 (106)
197 cd04932 ACT_AKiii-LysC-EC_1 AC 27.2 2.5E+02 0.0053 20.4 8.3 25 191-216 12-36 (75)
198 PRK09034 aspartate kinase; Rev 26.9 3E+02 0.0066 27.0 8.1 68 177-253 379-449 (454)
199 cd07940 DRE_TIM_IPMS 2-isoprop 26.8 2.4E+02 0.0052 25.3 6.9 38 184-223 190-228 (268)
200 TIGR00151 ispF 2C-methyl-D-ery 26.7 2.4E+02 0.0053 24.0 6.4 47 196-257 74-120 (155)
201 PF06005 DUF904: Protein of un 26.6 1E+02 0.0022 22.8 3.6 22 133-154 13-34 (72)
202 PRK14627 hypothetical protein; 26.3 3.2E+02 0.0069 21.3 6.6 25 134-158 4-28 (100)
203 PRK06291 aspartate kinase; Pro 26.1 3.7E+02 0.008 26.4 8.5 67 177-252 392-461 (465)
204 PRK14638 hypothetical protein; 26.0 3.7E+02 0.008 22.4 7.4 50 203-256 16-66 (150)
205 COG0440 IlvH Acetolactate synt 25.9 2.4E+02 0.0052 24.3 6.2 61 185-249 6-67 (163)
206 PRK14641 hypothetical protein; 25.8 3.4E+02 0.0074 23.3 7.3 47 206-257 20-67 (173)
207 PLN02317 arogenate dehydratase 25.8 2.5E+02 0.0055 27.3 7.1 39 184-223 284-322 (382)
208 PF02576 DUF150: Uncharacteris 25.6 3.6E+02 0.0079 21.8 7.6 50 203-256 4-53 (141)
209 PRK14625 hypothetical protein; 25.5 3.2E+02 0.007 21.8 6.6 50 133-189 4-53 (109)
210 cd04911 ACT_AKiii-YclM-BS_1 AC 25.4 2E+02 0.0042 21.5 5.0 22 195-216 15-36 (76)
211 PRK06635 aspartate kinase; Rev 25.2 3.5E+02 0.0076 25.7 8.0 66 176-252 333-401 (404)
212 PRK00092 ribosome maturation p 24.7 4.1E+02 0.0088 22.0 7.4 51 202-256 14-64 (154)
213 TIGR00103 DNA_YbaB_EbfC DNA-bi 24.3 3.4E+02 0.0075 21.1 6.5 26 133-158 7-32 (102)
214 TIGR00656 asp_kin_monofn aspar 24.3 4.7E+02 0.01 24.8 8.7 40 177-217 254-296 (401)
215 PRK06291 aspartate kinase; Pro 23.7 5E+02 0.011 25.5 9.0 39 178-217 316-357 (465)
216 COG4747 ACT domain-containing 23.6 4.1E+02 0.0089 22.0 6.8 38 186-225 72-111 (142)
217 cd04935 ACT_AKiii-DAPDC_1 ACT 23.0 3E+02 0.0065 19.9 6.6 25 191-216 12-36 (75)
218 cd07943 DRE_TIM_HOA 4-hydroxy- 23.0 2.5E+02 0.0053 25.2 6.2 38 184-223 186-224 (263)
219 PRK02047 hypothetical protein; 23.0 3.3E+02 0.0071 20.8 6.0 64 182-253 15-82 (91)
220 PRK14630 hypothetical protein; 23.0 4.4E+02 0.0095 21.8 7.3 49 201-254 14-63 (143)
221 PRK08841 aspartate kinase; Val 22.8 3.6E+02 0.0077 26.0 7.6 63 179-252 314-376 (392)
222 PRK14621 hypothetical protein; 22.2 3.8E+02 0.0082 21.4 6.4 26 133-158 6-31 (111)
223 PRK14624 hypothetical protein; 22.0 4.1E+02 0.0089 21.4 6.6 26 133-158 8-33 (115)
224 PRK14622 hypothetical protein; 21.5 4E+02 0.0088 20.9 6.5 26 133-158 3-28 (103)
225 PRK02001 hypothetical protein; 21.5 3.8E+02 0.0083 22.5 6.6 47 204-257 14-60 (152)
226 PRK15422 septal ring assembly 20.8 1.5E+02 0.0033 22.5 3.6 23 133-155 13-35 (79)
227 PRK00227 glnD PII uridylyl-tra 20.7 1.6E+02 0.0035 30.9 4.9 39 184-227 632-670 (693)
228 PF05088 Bac_GDH: Bacterial NA 20.6 4.1E+02 0.0089 30.7 8.3 32 182-214 16-47 (1528)
229 PF14689 SPOB_a: Sensor_kinase 20.0 3.2E+02 0.0068 19.2 5.0 45 100-151 13-57 (62)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.42 E-value=3.1e-13 Score=95.37 Aligned_cols=53 Identities=34% Similarity=0.609 Sum_probs=50.3
Q ss_pred hhhhhhHHHHHHHHHHHHhHHHHhccCCCC---CCCCccchHHHHHHHHHHHHHHH
Q 038298 95 QAQEHVIAERKRREKMNQQFIALSAVIPGI---KQMNKASVLEGTIKHLKELQERG 147 (259)
Q Consensus 95 ~~~~h~~~ER~RR~k~n~~~~~LrslvP~~---~k~dK~siL~~ai~YIk~Lq~~v 147 (259)
.+..|+..||+||++||..|..|+.+||.. .+++|++||..||+||+.|+.++
T Consensus 4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999987 89999999999999999999876
No 2
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.40 E-value=4.6e-13 Score=93.76 Aligned_cols=49 Identities=37% Similarity=0.637 Sum_probs=46.6
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHhccCCCC-----CCCCccchHHHHHHHHHHHH
Q 038298 96 AQEHVIAERKRREKMNQQFIALSAVIPGI-----KQMNKASVLEGTIKHLKELQ 144 (259)
Q Consensus 96 ~~~h~~~ER~RR~k~n~~~~~LrslvP~~-----~k~dK~siL~~ai~YIk~Lq 144 (259)
+..|+..||+||.+||+.|..|+.+||.. .+.+|++||..||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 57899999999999999999999999976 78999999999999999997
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.35 E-value=1.4e-12 Score=90.12 Aligned_cols=49 Identities=37% Similarity=0.541 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHhHHHHhccCCC---CCCCCccchHHHHHHHHHHHHHHHH
Q 038298 100 VIAERKRREKMNQQFIALSAVIPG---IKQMNKASVLEGTIKHLKELQERGK 148 (259)
Q Consensus 100 ~~~ER~RR~k~n~~~~~LrslvP~---~~k~dK~siL~~ai~YIk~Lq~~v~ 148 (259)
+..||+||++||+.|..|+++||. ..+++|++||.+||+||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 368999999999999999999994 6799999999999999999999875
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.94 E-value=4.6e-09 Score=100.48 Aligned_cols=66 Identities=27% Similarity=0.432 Sum_probs=57.2
Q ss_pred CCCCCCcchhhhhhHHHHHHHHHHHHhHHHHhccCCCC----CCCCccchHHHHHHHHHHHHHHHHHHHH
Q 038298 87 RVASRSPLQAQEHVIAERKRREKMNQQFIALSAVIPGI----KQMNKASVLEGTIKHLKELQERGKKLVE 152 (259)
Q Consensus 87 ~~~~r~~~~~~~h~~~ER~RR~k~n~~~~~LrslvP~~----~k~dK~siL~~ai~YIk~Lq~~v~~L~~ 152 (259)
+...|...++..|+++|||||++||+++..|..|||.+ .+..|..||..+++||+.||+..++..+
T Consensus 225 ~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E 294 (411)
T KOG1318|consen 225 TALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARE 294 (411)
T ss_pred chhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 44455666788999999999999999999999999986 5777999999999999999998875443
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.60 E-value=8.9e-08 Score=82.72 Aligned_cols=61 Identities=28% Similarity=0.465 Sum_probs=54.3
Q ss_pred hhhhhhHHHHHHHHHHHHhHHHHhccCCCC-------CCCCccchHHHHHHHHHHHHHHHHHHHHhhh
Q 038298 95 QAQEHVIAERKRREKMNQQFIALSAVIPGI-------KQMNKASVLEGTIKHLKELQERGKKLVEHTK 155 (259)
Q Consensus 95 ~~~~h~~~ER~RR~k~n~~~~~LrslvP~~-------~k~dK~siL~~ai~YIk~Lq~~v~~L~~~~~ 155 (259)
++..|.-+||+||+.||..|..|..|||.+ .|..||-||..+|+||.+|.+++...+++..
T Consensus 62 rr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s 129 (229)
T KOG1319|consen 62 RRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVS 129 (229)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999999999999999964 3778999999999999999998887777654
No 6
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.57 E-value=8.3e-07 Score=66.53 Aligned_cols=70 Identities=13% Similarity=0.197 Sum_probs=57.5
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHHHHHh
Q 038298 185 LIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLALSKFI 256 (259)
Q Consensus 185 ~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~~~ 256 (259)
+|+|.|++++ |+|.+|..+|-++|++|.+|.|++.|+++.++ |...-.++..++-++..+.|+++|...+
T Consensus 3 vveV~~~DRp-GLL~~i~~~l~~~~l~I~~A~I~T~gera~D~-FyV~d~~g~kl~~~~~~~~l~~~L~~al 72 (75)
T cd04897 3 VVTVQCRDRP-KLLFDVVCTLTDMDYVVFHATIDTDGDDAHQE-YYIRHKDGRTLSTEGERQRVIKCLEAAI 72 (75)
T ss_pred EEEEEeCCcC-cHHHHHHHHHHhCCeEEEEEEEeecCceEEEE-EEEEcCCCCccCCHHHHHHHHHHHHHHH
Confidence 5899999999 99999999999999999999999999999985 4555555567765555666777666554
No 7
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.43 E-value=2.4e-06 Score=63.55 Aligned_cols=67 Identities=16% Similarity=0.310 Sum_probs=56.3
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHHH
Q 038298 185 LIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLALS 253 (259)
Q Consensus 185 ~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~ 253 (259)
+|+|.+++++ |+|.+|.++|.++||+|..|.|++.|+++.++ |...-.++..++-.+....|+++|.
T Consensus 3 viev~a~DRp-GLL~~i~~~l~~~gl~I~~AkIsT~Gerv~Dv-FyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 3 LVKVDSARKP-GILLEAVQVLTDLDLCITKAYISSDGGWFMDV-FHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred EEEEEECCcC-CHHHHHHHHHHHCCcEEEEEEEeecCCeEEEE-EEEECCCCCCCCCHHHHHHHHHHhc
Confidence 6899999999 99999999999999999999999999999985 4455445566665566778888774
No 8
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.39 E-value=3.8e-06 Score=62.99 Aligned_cols=69 Identities=19% Similarity=0.249 Sum_probs=55.8
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEE--EeCCeEEEEEEEEEecCceecCHHHHHHHHHHHHHHHh
Q 038298 185 LIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTI--PFGNYALDITVVAQMEVEFCLTVKELVKNLRLALSKFI 256 (259)
Q Consensus 185 ~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs--~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~~~ 256 (259)
+|+|.|.+++ |+|.+|.++|..+|++|..|.|+ +.|+++.+++.+ ..++ ..++-.+-.+.|+++|...+
T Consensus 2 vlev~a~DRp-GLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g-~kl~d~~~~~~L~~~L~~~l 72 (75)
T cd04896 2 LLQIRCVDQK-GLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDG-KKIMDPKKQAALCARLREEM 72 (75)
T ss_pred EEEEEeCCcc-cHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCC-CccCCHHHHHHHHHHHHHHh
Confidence 5899999999 99999999999999999999999 999999996655 5444 34654455667777776554
No 9
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.30 E-value=9.8e-06 Score=60.36 Aligned_cols=68 Identities=16% Similarity=0.278 Sum_probs=49.4
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEE-eCCeEEEEEEEEEecCceecCHHHHHHHHHHHHHH
Q 038298 184 VLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIP-FGNYALDITVVAQMEVEFCLTVKELVKNLRLALSK 254 (259)
Q Consensus 184 v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~-~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~ 254 (259)
++++|.|++++ |+|.++..+|..+|++|++|.+.+ .++.+++.+ ...-.++. ...++..+.|+++|.+
T Consensus 1 ~~~ei~~~Dr~-gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F-~V~d~~~~-~~~~~~~~~l~~~L~~ 69 (76)
T cd04927 1 FLLKLFCSDRK-GLLHDVTEVLYELELTIERVKVSTTPDGRVLDLF-FITDAREL-LHTKKRREETYDYLRA 69 (76)
T ss_pred CEEEEEECCCC-CHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEE-EEeCCCCC-CCCHHHHHHHHHHHHH
Confidence 46899999999 999999999999999999999986 889999854 44432322 2223334444444443
No 10
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.27 E-value=1.5e-05 Score=58.40 Aligned_cols=69 Identities=22% Similarity=0.290 Sum_probs=54.5
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEe-CCeEEEEEEEEEecCceecCHHHHHHHHHHHHHHH
Q 038298 185 LIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPF-GNYALDITVVAQMEVEFCLTVKELVKNLRLALSKF 255 (259)
Q Consensus 185 ~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~-~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~~ 255 (259)
.|.|.|++++ |+|.+|..+|..+||+|++|.+.+. ++.++++ |...-.++..+..++..+.|+++|.++
T Consensus 3 ~i~v~~~Dr~-gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~-F~v~~~~~~~~~~~~~~~~l~~~L~~~ 72 (73)
T cd04900 3 EVFIYTPDRP-GLFARIAGALDQLGLNILDARIFTTRDGYALDT-FVVLDPDGEPIGERERLARIREALEDA 72 (73)
T ss_pred EEEEEecCCC-CHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEE-EEEECCCCCCCChHHHHHHHHHHHHhh
Confidence 5789999999 9999999999999999999999887 5788874 444444444555556667788877664
No 11
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.22 E-value=2.1e-05 Score=58.12 Aligned_cols=71 Identities=13% Similarity=0.199 Sum_probs=56.5
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecC-ceecCHHHHHHHHHHHHHHHhh
Q 038298 185 LIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEV-EFCLTVKELVKNLRLALSKFIK 257 (259)
Q Consensus 185 ~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~-~~~~t~~dl~~~L~~al~~~~~ 257 (259)
+|+|.+++++ |+|.+|..+|..+|+.|+.|.+.+.++.+++. |.+.-.+ +..+..++-.++|+++|.++++
T Consensus 2 ~~~v~~~Dr~-gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~-f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 2 AIELTGTDRP-GLLSEVFAVLADLHCNVVEARAWTHNGRLACV-IYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred EEEEEECCCC-CHHHHHHHHHHHCCCcEEEEEEEEECCEEEEE-EEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 5889999999 99999999999999999999999999998874 4444322 3345455667888888887764
No 12
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.20 E-value=1.3e-06 Score=89.85 Aligned_cols=52 Identities=27% Similarity=0.503 Sum_probs=48.4
Q ss_pred hhhhhhHHHHHHHHHHHHhHHHHhccCCCC----CCCCccchHHHHHHHHHHHHHH
Q 038298 95 QAQEHVIAERKRREKMNQQFIALSAVIPGI----KQMNKASVLEGTIKHLKELQER 146 (259)
Q Consensus 95 ~~~~h~~~ER~RR~k~n~~~~~LrslvP~~----~k~dK~siL~~ai~YIk~Lq~~ 146 (259)
.+..|+.+|||||++||..+.+|.+|||.. -|+||.+||..||.+|+.+++.
T Consensus 20 ~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 20 KRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 377999999999999999999999999975 5999999999999999999885
No 13
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.20 E-value=9.5e-07 Score=80.18 Aligned_cols=55 Identities=31% Similarity=0.518 Sum_probs=49.1
Q ss_pred hhhhhhHHHHHHHHHHHHhHHHHhccCCC--------CCCCCccchHHHHHHHHHHHHHHHHH
Q 038298 95 QAQEHVIAERKRREKMNQQFIALSAVIPG--------IKQMNKASVLEGTIKHLKELQERGKK 149 (259)
Q Consensus 95 ~~~~h~~~ER~RR~k~n~~~~~LrslvP~--------~~k~dK~siL~~ai~YIk~Lq~~v~~ 149 (259)
++..|-+.||+||.+||+.+..|+.|||. .+|++||.||.-|++|++.|+.....
T Consensus 32 rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 32 RKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 46688899999999999999999999994 27889999999999999999986654
No 14
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.14 E-value=7.2e-06 Score=73.63 Aligned_cols=62 Identities=18% Similarity=0.382 Sum_probs=51.8
Q ss_pred cchhhhhhHHHHHHHHHHHHhHHHHhccCCCC--CCCC-ccchHHHHHHHHHHHHHHHHHHHHhh
Q 038298 93 PLQAQEHVIAERKRREKMNQQFIALSAVIPGI--KQMN-KASVLEGTIKHLKELQERGKKLVEHT 154 (259)
Q Consensus 93 ~~~~~~h~~~ER~RR~k~n~~~~~LrslvP~~--~k~d-K~siL~~ai~YIk~Lq~~v~~L~~~~ 154 (259)
...+..|+.-||+||..|++.|..|+.+||.. .+.. .++||..|..||+.|+.+....+..+
T Consensus 57 ~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~ 121 (232)
T KOG2483|consen 57 ASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDI 121 (232)
T ss_pred CcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHH
Confidence 34577899999999999999999999999975 2333 58999999999999998877665544
No 15
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.94 E-value=0.00014 Score=51.99 Aligned_cols=68 Identities=18% Similarity=0.251 Sum_probs=55.5
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHHHHH
Q 038298 185 LIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLALSKF 255 (259)
Q Consensus 185 ~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~~ 255 (259)
.|.|.+++++ |+|.+|+.+|.++++.|.++.+.+.++.++. +|+++-.++.... .+..+.|+++|.+.
T Consensus 2 ~l~v~~~d~~-gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~-~f~i~~~~~~~~~-~~~~~~i~~~l~~~ 69 (70)
T cd04899 2 VLELTALDRP-GLLADVTRVLAELGLNIHSAKIATLGERAED-VFYVTDADGQPLD-PERQEALRAALGEA 69 (70)
T ss_pred EEEEEEcCCc-cHHHHHHHHHHHCCCeEEEEEEEecCCEEEE-EEEEECCCCCcCC-HHHHHHHHHHHHhh
Confidence 5789999999 9999999999999999999999998887774 6777765555544 45677888888764
No 16
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.75 E-value=2e-05 Score=72.69 Aligned_cols=56 Identities=25% Similarity=0.423 Sum_probs=49.1
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHhccCCC--CCCCCccchHHHHHHHHHHHHHHHHHHH
Q 038298 96 AQEHVIAERKRREKMNQQFIALSAVIPG--IKQMNKASVLEGTIKHLKELQERGKKLV 151 (259)
Q Consensus 96 ~~~h~~~ER~RR~k~n~~~~~LrslvP~--~~k~dK~siL~~ai~YIk~Lq~~v~~L~ 151 (259)
+.--+.-||+|-+-||..|..||+|+|. +.|..||.||+.+.+||.+|+.+.-+|-
T Consensus 61 ReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll 118 (373)
T KOG0561|consen 61 REIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTELL 118 (373)
T ss_pred HHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccccc
Confidence 4455668999999999999999999996 6899999999999999999998765553
No 17
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.65 E-value=4.1e-05 Score=79.56 Aligned_cols=60 Identities=30% Similarity=0.499 Sum_probs=54.5
Q ss_pred chhhhhhHHHHHHHHHHHHhHHHHhccCCC-CCCCCccchHHHHHHHHHHHHHHHHHHHHh
Q 038298 94 LQAQEHVIAERKRREKMNQQFIALSAVIPG-IKQMNKASVLEGTIKHLKELQERGKKLVEH 153 (259)
Q Consensus 94 ~~~~~h~~~ER~RR~k~n~~~~~LrslvP~-~~k~dK~siL~~ai~YIk~Lq~~v~~L~~~ 153 (259)
.++..|+.+|||.|..||+++..|+.+||+ ..|..|.++|..||+||++|+...+.++.+
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~ 335 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLE 335 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchh
Confidence 458899999999999999999999999997 479999999999999999999887776654
No 18
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.59 E-value=0.00043 Score=72.97 Aligned_cols=83 Identities=16% Similarity=0.264 Sum_probs=64.5
Q ss_pred CCceEEE--EeCCeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHH
Q 038298 172 LPDIVVR--VSDNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLR 249 (259)
Q Consensus 172 ~p~VeV~--~~~~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~ 249 (259)
.|.|.+. ..+.-.+|+|.|.+++ |+|.+|.++|.++||+|.+|.|+|.|+++.+++.+ .-.++..++ .+..+.|+
T Consensus 795 ~~~V~~d~~~s~~~TvlEV~a~DRp-GLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV-~~~~g~~l~-~~~~~~l~ 871 (884)
T PRK05007 795 PTEVSFLPTHTDRRSYMELIALDQP-GLLARVGKIFADLGISLHGARITTIGERVEDLFIL-ATADRRALN-EELQQELR 871 (884)
T ss_pred CCEEEEccCCCCCeEEEEEEeCCch-HHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEE-EcCCCCcCC-HHHHHHHH
Confidence 3455553 2345578999999999 99999999999999999999999999999986544 444455677 55567777
Q ss_pred HHHHHHhh
Q 038298 250 LALSKFIK 257 (259)
Q Consensus 250 ~al~~~~~ 257 (259)
++|...+.
T Consensus 872 ~~L~~~l~ 879 (884)
T PRK05007 872 QRLTEALN 879 (884)
T ss_pred HHHHHHHh
Confidence 77776653
No 19
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.55 E-value=0.001 Score=48.63 Aligned_cols=68 Identities=13% Similarity=0.193 Sum_probs=51.9
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHHHH
Q 038298 184 VLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLALSK 254 (259)
Q Consensus 184 v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~ 254 (259)
..|.|.+++++ |+|.+|..+|.++|++|+++.+.+.++..+ .+|...-.++.... .+..++|+++|..
T Consensus 2 tri~V~~~D~~-Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~-d~f~v~~~~~~~~~-~~~~~~l~~~l~~ 69 (72)
T cd04926 2 VRLELRTEDRV-GLLSDVTRVFRENGLTVTRAEISTQGDMAV-NVFYVTDANGNPVD-PKTIEAVRQEIGP 69 (72)
T ss_pred eEEEEEECCcc-CHHHHHHHHHHHCCcEEEEEEEecCCCeEE-EEEEEECCCCCcCC-HHHHHHHHHHhcc
Confidence 35778899999 999999999999999999999988877666 46666544444443 3556677777653
No 20
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.46 E-value=0.00014 Score=64.99 Aligned_cols=63 Identities=22% Similarity=0.260 Sum_probs=54.2
Q ss_pred CcchhhhhhHHHHHHHHHHHHhHHHHhccCCC----CCCCCccchHHHHHHHHHHHHHHHHHHHHhh
Q 038298 92 SPLQAQEHVIAERKRREKMNQQFIALSAVIPG----IKQMNKASVLEGTIKHLKELQERGKKLVEHT 154 (259)
Q Consensus 92 ~~~~~~~h~~~ER~RR~k~n~~~~~LrslvP~----~~k~dK~siL~~ai~YIk~Lq~~v~~L~~~~ 154 (259)
...++..++..||+|=+.+|..|..||.+||. .+|..|..+|.-||.||+.|+.-++.-+...
T Consensus 106 ~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 106 TSAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 44567788899999999999999999999995 5688999999999999999998877655443
No 21
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.38 E-value=0.0032 Score=44.38 Aligned_cols=68 Identities=19% Similarity=0.221 Sum_probs=52.3
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHHHHH
Q 038298 185 LIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLALSKF 255 (259)
Q Consensus 185 ~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~~ 255 (259)
.|.|.|++++ |+|.+|+.+|.++|+.|.++.+.+.++... ..|.+.-.++...+ ++-.+.|++.|...
T Consensus 2 ~l~i~~~d~~-g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~~~~~l~~~l~~~ 69 (70)
T cd04873 2 VVEVYAPDRP-GLLADITRVLADLGLNIHDARISTTGERAL-DVFYVTDSDGRPLD-PERIARLEEALEDA 69 (70)
T ss_pred EEEEEeCCCC-CHHHHHHHHHHHCCCeEEEEEEeecCCEEE-EEEEEECCCCCcCC-HHHHHHHHHHHHhh
Confidence 4778999999 999999999999999999999988877544 46666655543333 45667777777653
No 22
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.38 E-value=0.00038 Score=53.19 Aligned_cols=50 Identities=22% Similarity=0.418 Sum_probs=42.0
Q ss_pred HHHHHhHHHHhccCCCC------CCCCccchHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038298 108 EKMNQQFIALSAVIPGI------KQMNKASVLEGTIKHLKELQERGKKLVEHTKRK 157 (259)
Q Consensus 108 ~k~n~~~~~LrslvP~~------~k~dK~siL~~ai~YIk~Lq~~v~~L~~~~~~~ 157 (259)
++|++++..|+.|+|.. .+..-+-||+|+..||+.|+.+|..|.+.+.+.
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~L 75 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSEL 75 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999963 333445589999999999999999999987653
No 23
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.37 E-value=0.00049 Score=62.26 Aligned_cols=60 Identities=22% Similarity=0.330 Sum_probs=50.4
Q ss_pred hhhhhHHHHHHHHHHHHhHHHH-hccCCC-CCCCCccchHHHHHHHHHHHHHHHHHHHHhhh
Q 038298 96 AQEHVIAERKRREKMNQQFIAL-SAVIPG-IKQMNKASVLEGTIKHLKELQERGKKLVEHTK 155 (259)
Q Consensus 96 ~~~h~~~ER~RR~k~n~~~~~L-rslvP~-~~k~dK~siL~~ai~YIk~Lq~~v~~L~~~~~ 155 (259)
+..--+.||+|=.|+|+.|.+| |.-.++ ....-|+.||..||.||..||.-++++.++.+
T Consensus 119 RKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~ 180 (284)
T KOG3960|consen 119 RKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEK 180 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 4456779999999999999999 455565 46788999999999999999999988877543
No 24
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=97.33 E-value=0.0013 Score=69.18 Aligned_cols=83 Identities=14% Similarity=0.241 Sum_probs=65.0
Q ss_pred CCceEEE--EeCCeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHH
Q 038298 172 LPDIVVR--VSDNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLR 249 (259)
Q Consensus 172 ~p~VeV~--~~~~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~ 249 (259)
.|.|.+. ..+.-.+|+|.+.+++ |+|.+|.++|.++|++|..|.|+|.|+++.+++.+ .-.++..++-++. +.|+
T Consensus 770 ~~~V~~dn~~s~~~T~iev~a~Drp-GLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv-~~~~g~~l~~~~~-~~l~ 846 (854)
T PRK01759 770 KTEVRFLNEEKQEQTEMELFALDRA-GLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFIL-TNQQGQALDEEER-KALK 846 (854)
T ss_pred CCEEEEccCCCCCeEEEEEEeCCch-HHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEE-ECCCCCcCChHHH-HHHH
Confidence 3455553 2334578999999999 99999999999999999999999999999986554 4444456665554 8888
Q ss_pred HHHHHHhh
Q 038298 250 LALSKFIK 257 (259)
Q Consensus 250 ~al~~~~~ 257 (259)
++|...++
T Consensus 847 ~~L~~~l~ 854 (854)
T PRK01759 847 SRLLSNLS 854 (854)
T ss_pred HHHHHHhC
Confidence 88887653
No 25
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=97.28 E-value=0.002 Score=68.10 Aligned_cols=83 Identities=13% Similarity=0.190 Sum_probs=62.3
Q ss_pred CCceEEEEe--CCeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHH
Q 038298 172 LPDIVVRVS--DNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLR 249 (259)
Q Consensus 172 ~p~VeV~~~--~~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~ 249 (259)
.|.|.+... ++...|.|.+.+++ |+|.+|..+|..+||+|+.|.|.|.+++++++ |.+.-.++..++..+..+.|+
T Consensus 801 ~~~V~i~~~~~~~~T~i~V~a~Drp-GLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~-F~V~d~~g~~l~~~~~~~~l~ 878 (895)
T PRK00275 801 PTQVTISNDAQRPVTVLEIIAPDRP-GLLARIGRIFLEFDLSLQNAKIATLGERVEDV-FFITDADNQPLSDPQLCSRLQ 878 (895)
T ss_pred CCEEEEEECCCCCeEEEEEEECCCC-CHHHHHHHHHHHCCCEEEEeEEEecCCEEEEE-EEEECCCCCCCCCHHHHHHHH
Confidence 355665432 34578999999999 99999999999999999999999999999985 555544444555444455666
Q ss_pred HHHHHHh
Q 038298 250 LALSKFI 256 (259)
Q Consensus 250 ~al~~~~ 256 (259)
++|.+.+
T Consensus 879 ~~L~~~L 885 (895)
T PRK00275 879 DAICEQL 885 (895)
T ss_pred HHHHHHH
Confidence 6666554
No 26
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.21 E-value=0.0093 Score=44.03 Aligned_cols=64 Identities=13% Similarity=0.283 Sum_probs=48.3
Q ss_pred eEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHHHHH
Q 038298 183 NVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLALSKF 255 (259)
Q Consensus 183 ~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~~ 255 (259)
.++|.+.+++++ |++..|..+|.++|.++++++..+.++.+. ..+.+++... + ...|+.+|.++
T Consensus 2 ~~vItv~G~Drp-Giv~~v~~~l~~~g~ni~d~~~~~~~~~f~-~~~~v~~~~~---~----~~~l~~~L~~l 65 (76)
T PF13740_consen 2 QLVITVVGPDRP-GIVAAVTGVLAEHGCNIEDSRQAVLGGRFT-LIMLVSIPED---S----LERLESALEEL 65 (76)
T ss_dssp EEEEEEEEE--T-THHHHHHHHHHCTT-EEEEEEEEEETTEEE-EEEEEEESHH---H----HHHHHHHHHHH
T ss_pred EEEEEEEecCCC-cHHHHHHHHHHHCCCcEEEEEEEEEcCeEE-EEEEEEeCcc---c----HHHHHHHHHHH
Confidence 478999999999 999999999999999999999999999864 5666666621 3 34555555554
No 27
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.21 E-value=0.0051 Score=45.26 Aligned_cols=64 Identities=17% Similarity=0.150 Sum_probs=45.5
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEe-CCeEEEEEEEEEecCceecCHHHHHHHHHHHH
Q 038298 185 LIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPF-GNYALDITVVAQMEVEFCLTVKELVKNLRLAL 252 (259)
Q Consensus 185 ~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~-~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al 252 (259)
.|-|.|+.++ |+|+++..+|..+||+|+.|.+.+. ++.+++ +|.+.-.++. .-++|-++|..||
T Consensus 3 eI~V~~~Dr~-gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LD-tF~V~d~~~~--~~~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGDKP-KLLSQLSSLLGDLGLNIAEAHAFSTDDGLALD-IFVVTGWKRG--ETAALGHALQKEI 67 (68)
T ss_pred EEEEEECCCc-chHHHHHHHHHHCCCceEEEEEEEcCCCeEEE-EEEEecCCcc--chHHHHHHHHHhh
Confidence 4678899999 9999999999999999999998765 556676 4555433321 2344444544443
No 28
>PRK04374 PII uridylyl-transferase; Provisional
Probab=97.16 E-value=0.0036 Score=66.05 Aligned_cols=83 Identities=20% Similarity=0.265 Sum_probs=64.5
Q ss_pred CCceEEEE--eCCeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHH
Q 038298 172 LPDIVVRV--SDNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLR 249 (259)
Q Consensus 172 ~p~VeV~~--~~~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~ 249 (259)
.|.|.+.. .++-..|.|.+.+++ |+|.+|..+|..+|++|..|.|.|.+++++++ |.++-.++..++.++. +.|+
T Consensus 783 ~~~V~~~~~~~~~~t~leI~a~Drp-GLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~-F~V~d~~g~~~~~~~~-~~l~ 859 (869)
T PRK04374 783 APRVEFSESAGGRRTRISLVAPDRP-GLLADVAHVLRMQHLRVHDARIATFGERAEDQ-FQITDEHDRPLSESAR-QALR 859 (869)
T ss_pred CCeEEEeecCCCCeEEEEEEeCCcC-cHHHHHHHHHHHCCCeEEEeEEEecCCEEEEE-EEEECCCCCcCChHHH-HHHH
Confidence 35566643 234578999999999 99999999999999999999999999999985 4455444445555554 8888
Q ss_pred HHHHHHhh
Q 038298 250 LALSKFIK 257 (259)
Q Consensus 250 ~al~~~~~ 257 (259)
++|...+.
T Consensus 860 ~~L~~~l~ 867 (869)
T PRK04374 860 DALCACLD 867 (869)
T ss_pred HHHHHHhc
Confidence 88877654
No 29
>PRK05092 PII uridylyl-transferase; Provisional
Probab=97.11 E-value=0.0038 Score=66.23 Aligned_cols=83 Identities=16% Similarity=0.282 Sum_probs=64.0
Q ss_pred CCceEEEE--eCCeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHH
Q 038298 172 LPDIVVRV--SDNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLR 249 (259)
Q Consensus 172 ~p~VeV~~--~~~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~ 249 (259)
.|.|.+.- .+....|.|.|.+++ |+|.+|..+|.++|++|.+|.+.|.++++++ +|.+.-.++..++..+....|+
T Consensus 830 ~~~V~~~~~~s~~~t~i~I~~~Drp-GLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D-~F~v~d~~g~~i~~~~~~~~l~ 907 (931)
T PRK05092 830 PPRVTIDNEASNRFTVIEVNGRDRP-GLLYDLTRALSDLNLNIASAHIATYGERAVD-VFYVTDLFGLKITNEARQAAIR 907 (931)
T ss_pred CCEEEEeeCCCCCeEEEEEEECCcC-cHHHHHHHHHHHCCceEEEEEEEEcCCEEEE-EEEEeCCCCCcCCCHHHHHHHH
Confidence 35666643 234578999999999 9999999999999999999999999999987 4566555555555444466777
Q ss_pred HHHHHHh
Q 038298 250 LALSKFI 256 (259)
Q Consensus 250 ~al~~~~ 256 (259)
++|...+
T Consensus 908 ~~L~~~L 914 (931)
T PRK05092 908 RALLAAL 914 (931)
T ss_pred HHHHHHh
Confidence 7777665
No 30
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=97.03 E-value=0.013 Score=40.61 Aligned_cols=37 Identities=5% Similarity=0.141 Sum_probs=34.9
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCC
Q 038298 185 LIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGN 222 (259)
Q Consensus 185 ~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~ 222 (259)
.|.|.|++++ |.|.+|.+.|.++|+.|..+...+.++
T Consensus 2 ~v~v~~~drp-G~l~~v~~~la~~~inI~~~~~~~~~~ 38 (66)
T PF01842_consen 2 RVRVIVPDRP-GILADVTEILADHGINIDSISQSSDKD 38 (66)
T ss_dssp EEEEEEETST-THHHHHHHHHHHTTEEEEEEEEEEESS
T ss_pred EEEEEcCCCC-CHHHHHHHHHHHcCCCHHHeEEEecCC
Confidence 5789999999 999999999999999999999988887
No 31
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=96.83 E-value=0.0098 Score=43.84 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=42.0
Q ss_pred eEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeC-CeEEEEEEEEEecCc
Q 038298 183 NVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFG-NYALDITVVAQMEVE 236 (259)
Q Consensus 183 ~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~-~~~l~~tI~aq~~~~ 236 (259)
.+.|+|.+.+++ |+|.+|..+|.+.|+.|.+.++.... +....++|..++.+.
T Consensus 6 ~~~l~i~~~dr~-GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~ 59 (80)
T PF13291_consen 6 PVRLRIEAEDRP-GLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDL 59 (80)
T ss_dssp EEEEEEEEE--T-THHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSH
T ss_pred EEEEEEEEEcCC-CHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCH
Confidence 366889999999 99999999999999999999988863 555557888888863
No 32
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.81 E-value=0.0086 Score=62.92 Aligned_cols=81 Identities=19% Similarity=0.277 Sum_probs=64.0
Q ss_pred CceEEEE--eCCeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 173 PDIVVRV--SDNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 173 p~VeV~~--~~~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
|.|.+.- .+.-..|.|.|.+++ |+|.+|.++|.++|++|.++.+.+.++++.+ +|.++...+..++- +..+.|++
T Consensus 767 ~~V~~d~~~s~~~t~~~v~~~Drp-Gll~~i~~~l~~~~~~i~~a~i~t~~~~~~d-~F~v~~~~g~~~~~-~~~~~l~~ 843 (850)
T TIGR01693 767 PRVTILNTASRKATIMEVRALDRP-GLLARVGRTLEELGLSIQSAKITTFGEKAED-VFYVTDLFGLKLTD-EEEQRLLE 843 (850)
T ss_pred CeEEEccCCCCCeEEEEEEECCcc-HHHHHHHHHHHHCCCeEEEEEEEecCcccee-EEEEECCCCCCCCH-HHHHHHHH
Confidence 4455532 234578999999999 9999999999999999999999999999887 46666666666664 56788888
Q ss_pred HHHHHh
Q 038298 251 ALSKFI 256 (259)
Q Consensus 251 al~~~~ 256 (259)
+|...+
T Consensus 844 ~L~~~l 849 (850)
T TIGR01693 844 VLAASV 849 (850)
T ss_pred HHHHHh
Confidence 887654
No 33
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.78 E-value=0.01 Score=61.84 Aligned_cols=68 Identities=12% Similarity=0.210 Sum_probs=56.6
Q ss_pred CeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHHH
Q 038298 182 NNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLALS 253 (259)
Q Consensus 182 ~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~ 253 (259)
+-..|.|.|.+++ |+|.+|..+|..+|++|.+|.|.|.++.++++ |.+.-.++..++ ++ .+.|+++|.
T Consensus 706 ~~t~i~V~a~Drp-GLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~-F~V~d~~g~~~~-~~-~~~l~~~L~ 773 (774)
T PRK03381 706 DATVLEVRAADRP-GLLARLARALERAGVDVRWARVATLGADVVDV-FYVTGAAGGPLA-DA-RAAVEQAVL 773 (774)
T ss_pred CeEEEEEEeCCch-hHHHHHHHHHHHCCCeEEEEEEeecCCeEEEE-EEEECCCCCcCc-hH-HHHHHHHhh
Confidence 3478999999999 99999999999999999999999999999974 555655555665 33 678888774
No 34
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.75 E-value=0.024 Score=41.94 Aligned_cols=62 Identities=13% Similarity=0.190 Sum_probs=48.4
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 184 VLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 184 v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
+.|.+.|++++ |++.+|-+.|.++|..|+.++....++.++ ..+....+. .+.++|.+.|..
T Consensus 2 ~iltv~g~Dr~-GiVa~vs~~la~~g~nI~d~~q~~~~~~F~-m~~~~~~~~---~~~~~l~~~l~~ 63 (77)
T cd04893 2 LVISALGTDRP-GILNELTRAVSESGCNILDSRMAILGTEFA-LTMLVEGSW---DAIAKLEAALPG 63 (77)
T ss_pred EEEEEEeCCCC-hHHHHHHHHHHHcCCCEEEceeeEEcCEEE-EEEEEEecc---ccHHHHHHHHHH
Confidence 57889999999 999999999999999999999888788664 344555542 355666665555
No 35
>PRK03059 PII uridylyl-transferase; Provisional
Probab=96.75 E-value=0.01 Score=62.47 Aligned_cols=80 Identities=14% Similarity=0.230 Sum_probs=60.8
Q ss_pred CceEEEE--eCCeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 173 PDIVVRV--SDNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 173 p~VeV~~--~~~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
|.|.+.. .++-..|.|.|.+++ |+|.+|..+|..+|++|..|.|.|.++++++++. +. +.. ....+-.+.|++
T Consensus 774 ~~V~~~~~~~~~~T~i~V~a~Drp-GLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~-V~-~~~--~~~~~~~~~l~~ 848 (856)
T PRK03059 774 PRVDLRPDERGQYYILSVSANDRP-GLLYAIARVLAEHRVSVHTAKINTLGERVEDTFL-ID-GSG--LSDNRLQIQLET 848 (856)
T ss_pred ceEEEEEcCCCCEEEEEEEeCCcc-hHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEE-Ec-CCC--CCCHHHHHHHHH
Confidence 3455533 234578999999999 9999999999999999999999999999998544 32 221 333455678888
Q ss_pred HHHHHhh
Q 038298 251 ALSKFIK 257 (259)
Q Consensus 251 al~~~~~ 257 (259)
+|.+.++
T Consensus 849 ~L~~~L~ 855 (856)
T PRK03059 849 ELLDALA 855 (856)
T ss_pred HHHHHhc
Confidence 8877664
No 36
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.62 E-value=0.016 Score=61.01 Aligned_cols=83 Identities=18% Similarity=0.179 Sum_probs=60.5
Q ss_pred CCceEEEE--eCCeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEE-EeCCeEEEEEEEEEecCceecCHHHHHHHH
Q 038298 172 LPDIVVRV--SDNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTI-PFGNYALDITVVAQMEVEFCLTVKELVKNL 248 (259)
Q Consensus 172 ~p~VeV~~--~~~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs-~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L 248 (259)
.|.|.+.- .++...|.|.+++++ |+|.+|..+|..+||+|+.|.|. +.++.+++ +|.++-.++..++.++..+.|
T Consensus 655 ~~~v~~~~~~~~~~t~i~V~~~Drp-gLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD-~F~V~~~~g~~~~~~~~~~~i 732 (850)
T TIGR01693 655 GPLALIDGTRPSGGTEVFIYAPDQP-GLFAKVAGALAMLSLSVHDAQVNTTKDGVALD-TFVVQDLFGSPPAAERVFQEL 732 (850)
T ss_pred CCEEEEeccCCCCeEEEEEEeCCCC-cHHHHHHHHHHHCCCeEEEEEEEEecCCEEEE-EEEEECCCCCCCCcHHHHHHH
Confidence 34454421 235568999999999 99999999999999999999998 67888887 455555555555544545556
Q ss_pred HHHHHHHh
Q 038298 249 RLALSKFI 256 (259)
Q Consensus 249 ~~al~~~~ 256 (259)
+++|..++
T Consensus 733 ~~~L~~~L 740 (850)
T TIGR01693 733 LQGLVDVL 740 (850)
T ss_pred HHHHHHHH
Confidence 66665554
No 37
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.013 Score=61.02 Aligned_cols=83 Identities=16% Similarity=0.285 Sum_probs=63.9
Q ss_pred CCCceEEEE--eCCeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHH
Q 038298 171 TLPDIVVRV--SDNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNL 248 (259)
Q Consensus 171 ~~p~VeV~~--~~~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L 248 (259)
..|.|.+.- ..+...+++.+.+++ |+|..|..+|.+++|++.+|.|+|+|.++.+.+ ....-.+..++ .++.+.+
T Consensus 777 i~p~v~i~~t~~~~~t~lEv~alDRp-GLLa~v~~v~~dl~l~i~~AkItT~GErveD~F-~vt~~~~~~l~-~~~~q~l 853 (867)
T COG2844 777 IPPRVTILPTASNDKTVLEVRALDRP-GLLAALAGVFADLGLSLHSAKITTFGERVEDVF-IVTDADGQALN-AELRQSL 853 (867)
T ss_pred cCCceeeccccCCCceEEEEEeCCcc-cHHHHHHHHHHhcccceeeeeeccccccceeEE-EEeccccccCC-HHHHHHH
Confidence 347777743 345678999999999 999999999999999999999999999998854 44444444554 4556777
Q ss_pred HHHHHHHh
Q 038298 249 RLALSKFI 256 (259)
Q Consensus 249 ~~al~~~~ 256 (259)
.++|...+
T Consensus 854 ~~~ll~al 861 (867)
T COG2844 854 LQRLLEAL 861 (867)
T ss_pred HHHHHHHh
Confidence 77766544
No 38
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.48 E-value=0.03 Score=40.17 Aligned_cols=61 Identities=11% Similarity=0.137 Sum_probs=45.2
Q ss_pred EEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHH
Q 038298 186 IRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLR 249 (259)
Q Consensus 186 I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~ 249 (259)
|+|.+..++ |+|.+|+.+|.+.|..|.+.+.....+....+.|..++.+... ++++.++|+
T Consensus 2 l~v~~~d~~-g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~~~~--l~~i~~~L~ 62 (74)
T cd04887 2 LRLELPNRP-GMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPSEEH--AETIVAAVR 62 (74)
T ss_pred EEEEeCCCC-chHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCCHHH--HHHHHHHHh
Confidence 678899999 9999999999999999999888776544444566677766433 334444443
No 39
>PRK05007 PII uridylyl-transferase; Provisional
Probab=96.47 E-value=0.027 Score=59.63 Aligned_cols=82 Identities=15% Similarity=0.207 Sum_probs=58.9
Q ss_pred CCceEEEE--eCCeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCC-eEEEEEEEEEecCceecCHHHHHHHH
Q 038298 172 LPDIVVRV--SDNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGN-YALDITVVAQMEVEFCLTVKELVKNL 248 (259)
Q Consensus 172 ~p~VeV~~--~~~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~-~~l~~tI~aq~~~~~~~t~~dl~~~L 248 (259)
.|.|.+.. .++...|.|.|++++ |+|.+|..+|..+||+|+.|.|.+.++ .++++ |.+.-.++..++ ++....|
T Consensus 688 ~p~V~i~~~~~~~~t~V~V~a~Drp-GLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~-F~V~d~~g~~~~-~~~~~~I 764 (884)
T PRK05007 688 KPLVLLSKQATRGGTEIFIWSPDRP-YLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDT-FIVLEPDGSPLS-QDRHQVI 764 (884)
T ss_pred CCeEEEEecCCCCeEEEEEEecCCc-CHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEE-EEEECCCCCCCC-HHHHHHH
Confidence 45555543 335678999999999 999999999999999999999887766 78874 444444444455 3444556
Q ss_pred HHHHHHHh
Q 038298 249 RLALSKFI 256 (259)
Q Consensus 249 ~~al~~~~ 256 (259)
+++|.+.+
T Consensus 765 ~~~L~~aL 772 (884)
T PRK05007 765 RKALEQAL 772 (884)
T ss_pred HHHHHHHH
Confidence 66665544
No 40
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=96.44 E-value=0.028 Score=59.29 Aligned_cols=83 Identities=22% Similarity=0.225 Sum_probs=61.0
Q ss_pred CCceEEEE--eCCeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEE-eCCeEEEEEEEEEecCceecCHHHHHHHH
Q 038298 172 LPDIVVRV--SDNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIP-FGNYALDITVVAQMEVEFCLTVKELVKNL 248 (259)
Q Consensus 172 ~p~VeV~~--~~~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~-~~~~~l~~tI~aq~~~~~~~t~~dl~~~L 248 (259)
.|.|.+.- ..+...|.|.|++++ |+|.+|..+|..+||+|+.|.|.+ .++.++++ |.+.-.++..++ .+..+.|
T Consensus 664 ~~~V~i~~~~~~~~t~V~V~~~Drp-GLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~-F~V~d~~g~~~~-~~~~~~l 740 (854)
T PRK01759 664 DLLVKISNRFSRGGTEIFIYCQDQA-NLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDS-FIVTELNGKLLE-FDRRRQL 740 (854)
T ss_pred CCEEEEEecCCCCeEEEEEEecCCc-cHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEE-EEEeCCCCCCCC-HHHHHHH
Confidence 45555532 345578999999999 999999999999999999999876 78889975 444444445555 3445567
Q ss_pred HHHHHHHhh
Q 038298 249 RLALSKFIK 257 (259)
Q Consensus 249 ~~al~~~~~ 257 (259)
+++|.+.++
T Consensus 741 ~~~L~~aL~ 749 (854)
T PRK01759 741 EQALTKALN 749 (854)
T ss_pred HHHHHHHHc
Confidence 777666553
No 41
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.41 E-value=0.023 Score=42.87 Aligned_cols=66 Identities=12% Similarity=0.267 Sum_probs=50.0
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHH
Q 038298 184 VLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLAL 252 (259)
Q Consensus 184 v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al 252 (259)
+.|.+.|++++ |++.+|.+.|-++|++|++.+..+.++.+. ..+.+.+.. ...++++|...|....
T Consensus 2 ~vl~i~g~D~p-Giva~vt~~la~~g~nI~~~~~~~~~~~f~-~~~~v~~~~-~~~~~~~L~~~l~~l~ 67 (88)
T cd04872 2 AVITVVGKDRV-GIVAGVSTKLAELNVNILDISQTIMDGYFT-MIMIVDISE-SNLDFAELQEELEELG 67 (88)
T ss_pred EEEEEEcCCCC-CHHHHHHHHHHHcCCCEEechhHhhCCccE-EEEEEEeCC-CCCCHHHHHHHHHHHH
Confidence 57899999999 999999999999999999999777666543 455555553 1356677776666543
No 42
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.37 E-value=0.034 Score=58.05 Aligned_cols=79 Identities=15% Similarity=0.127 Sum_probs=57.5
Q ss_pred CceEEEEe-CCeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHH
Q 038298 173 PDIVVRVS-DNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLA 251 (259)
Q Consensus 173 p~VeV~~~-~~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~a 251 (259)
|.|.++.. .+.+.|.|.|++++ |+|++|..+|..+|++|++|.+.+.++.+++ +|.+.-..+.....+++.+.|.++
T Consensus 588 ~~v~~~~~~~~~~~V~V~~~Drp-GLfa~i~~vL~~~glnI~dA~i~t~dg~~ld-~F~V~~~~~~~~~~~~l~~~L~~~ 665 (774)
T PRK03381 588 VHVEIAPADPHMVEVTVVAPDRR-GLLSKAAGVLALHRLRVRSASVRSHDGVAVL-EFVVSPRFGSPPDAALLRQDLRRA 665 (774)
T ss_pred CEEEEeeCCCCeEEEEEEecCCc-cHHHHHHHHHHHCCCeEEEeEEEecCCEEEE-EEEEECCCCCcchHHHHHHHHHHH
Confidence 44444322 35678999999999 9999999999999999999999997777776 455554444333445566666655
Q ss_pred HH
Q 038298 252 LS 253 (259)
Q Consensus 252 l~ 253 (259)
|.
T Consensus 666 L~ 667 (774)
T PRK03381 666 LD 667 (774)
T ss_pred Hc
Confidence 54
No 43
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.34 E-value=0.036 Score=40.30 Aligned_cols=65 Identities=11% Similarity=0.178 Sum_probs=45.5
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEe-CCeEEEEEEEEEecCcee-cCHHHHHHHHHHHH
Q 038298 185 LIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPF-GNYALDITVVAQMEVEFC-LTVKELVKNLRLAL 252 (259)
Q Consensus 185 ~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~-~~~~l~~tI~aq~~~~~~-~t~~dl~~~L~~al 252 (259)
.|.|.|++++ |++.+|.+.|-++|+.+++.+..+. ++..+ .+.+++..... .+.++|...|....
T Consensus 1 ii~v~g~D~~-Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f--~~~~~~~~~~~~~~~~~l~~~l~~l~ 67 (74)
T cd04875 1 ILTLSCPDRP-GIVAAVSGFLAEHGGNIVESDQFVDPDSGRF--FMRVEFELEGFDLSREALEAAFAPVA 67 (74)
T ss_pred CEEEEcCCCC-CHHHHHHHHHHHcCCCEEeeeeeecCCCCeE--EEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3789999999 9999999999999999999987752 33333 34444443322 45666666665543
No 44
>PRK00194 hypothetical protein; Validated
Probab=96.24 E-value=0.033 Score=41.96 Aligned_cols=65 Identities=12% Similarity=0.252 Sum_probs=49.0
Q ss_pred eEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 183 NVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 183 ~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
.+.|.|.|++++ |++.+|.+.|-++|+.|++.+..+.++... +.+.+.+.. ...+.++|.+.|..
T Consensus 3 ~~~ltv~g~Drp-Giva~vt~~la~~g~nI~~~~~~~~~~~~~-~~~~v~~~~-~~~~~~~l~~~l~~ 67 (90)
T PRK00194 3 KAIITVIGKDKV-GIIAGVSTVLAELNVNILDISQTIMDGYFT-MIMLVDISE-SKKDFAELKEELEE 67 (90)
T ss_pred eEEEEEEcCCCC-CHHHHHHHHHHHcCCCEEehhhHhhCCeeE-EEEEEEecC-CCCCHHHHHHHHHH
Confidence 467899999999 999999999999999999988777666543 455566553 13455666665554
No 45
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=96.13 E-value=0.083 Score=38.60 Aligned_cols=65 Identities=6% Similarity=0.134 Sum_probs=48.3
Q ss_pred EEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCC-----eEEEEEEEEEecCceecCHHHHHHHHHHHHH
Q 038298 186 IRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGN-----YALDITVVAQMEVEFCLTVKELVKNLRLALS 253 (259)
Q Consensus 186 I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~-----~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~ 253 (259)
|.|.|++++ |++.+|-+.|.++|+.|.+.+..+.+. ..+...+...+.. ..+..+|...|+..-.
T Consensus 2 l~v~g~D~~-Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~--~~~~~~l~~~l~~l~~ 71 (81)
T cd04869 2 VEVVGNDRP-GIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA--GTDLDALREELEELCD 71 (81)
T ss_pred EEEEeCCCC-CHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC--CCCHHHHHHHHHHHHH
Confidence 679999999 999999999999999999999888762 2232445555553 3566777766665443
No 46
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.86 E-value=0.1 Score=38.17 Aligned_cols=64 Identities=13% Similarity=0.216 Sum_probs=48.6
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHH
Q 038298 185 LIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLAL 252 (259)
Q Consensus 185 ~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al 252 (259)
+|.|.+.+++ |++.++.++|.++|+++.+.+..+.++.+ ...+.+.+... .+.++|...|....
T Consensus 1 ~vtv~G~Drp-Giv~~vt~~la~~~~nI~dl~~~~~~~~f-~~~~~v~~p~~--~~~~~l~~~l~~l~ 64 (75)
T cd04870 1 LITVTGPDRP-GLTSALTEVLAAHGVRILDVGQAVIHGRL-SLGILVQIPDS--ADSEALLKDLLFKA 64 (75)
T ss_pred CEEEEcCCCC-CHHHHHHHHHHHCCCCEEecccEEEcCee-EEEEEEEcCCC--CCHHHHHHHHHHHH
Confidence 3678899999 99999999999999999999988887753 34555565543 45666666655544
No 47
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.78 E-value=0.065 Score=38.47 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=43.4
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHH
Q 038298 185 LIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLR 249 (259)
Q Consensus 185 ~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~ 249 (259)
.|.|.++.++ |++.+|+..|.++|+.|...+.....+...++.|...+.+.. ..+++|.++|+
T Consensus 2 ~l~i~~~d~~-g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~-~~l~~l~~~L~ 64 (76)
T cd04888 2 TLSLLLEHRP-GVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMN-GDIDELLEELR 64 (76)
T ss_pred EEEEEecCCC-chHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchH-HHHHHHHHHHh
Confidence 4778899999 999999999999999998887654333344455556665432 12445555444
No 48
>PRK03059 PII uridylyl-transferase; Provisional
Probab=95.76 E-value=0.086 Score=55.73 Aligned_cols=81 Identities=15% Similarity=0.266 Sum_probs=57.3
Q ss_pred CceEEEE--eCCeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEE-eCCeEEEEEEEEEecCceecCHHHHHHHHH
Q 038298 173 PDIVVRV--SDNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIP-FGNYALDITVVAQMEVEFCLTVKELVKNLR 249 (259)
Q Consensus 173 p~VeV~~--~~~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~-~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~ 249 (259)
|-|-++. ..+...|-|.|++++ |+|++|..+|..+||+|+.|.+.+ .++.+++ +|.+.-.++. ...++....|+
T Consensus 666 ~~v~~~~~~~~~~~~v~i~~~d~~-gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld-~f~V~~~~~~-~~~~~~~~~i~ 742 (856)
T PRK03059 666 PIVRARLSPAGEGLQVMVYTPDQP-DLFARICGYFDRAGFSILDARVHTTRHGYALD-TFQVLDPEED-VHYRDIINLVE 742 (856)
T ss_pred CeEEEEecCCCCeEEEEEEecCCC-cHHHHHHHHHHHCCCceeeeEEEEcCCCeEEE-EEEEeCCCCC-CChHHHHHHHH
Confidence 4444433 335678999999999 999999999999999999999854 5667787 4555444433 34445556666
Q ss_pred HHHHHHh
Q 038298 250 LALSKFI 256 (259)
Q Consensus 250 ~al~~~~ 256 (259)
++|.+.+
T Consensus 743 ~~l~~~l 749 (856)
T PRK03059 743 HELAERL 749 (856)
T ss_pred HHHHHHH
Confidence 6666554
No 49
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.66 E-value=0.11 Score=36.17 Aligned_cols=62 Identities=11% Similarity=0.170 Sum_probs=41.7
Q ss_pred EEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeC----CeEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 186 IRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFG----NYALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 186 I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~----~~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
+.|.++.++ |.|.+|++.|.+.|++|.+....... .....+.|..++.+. -.++++.+.|++
T Consensus 1 ~~v~~~d~~-G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~--~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRP-GQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGA--EHIEEIIAALRE 66 (73)
T ss_pred CEEEeCCCC-ChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCH--HHHHHHHHHHHH
Confidence 467889999 99999999999999999988766542 233334455555432 224455555544
No 50
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=95.58 E-value=0.093 Score=55.72 Aligned_cols=73 Identities=19% Similarity=0.298 Sum_probs=52.6
Q ss_pred CeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEE-eCCeEEEEEEEEEecCceec-CHHHHHHHHHHHHHHHh
Q 038298 182 NNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIP-FGNYALDITVVAQMEVEFCL-TVKELVKNLRLALSKFI 256 (259)
Q Consensus 182 ~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~-~~~~~l~~tI~aq~~~~~~~-t~~dl~~~L~~al~~~~ 256 (259)
+...|.|.|.+++ |+|++|..+|..+||+|+.|.|.+ -++.+++ +|.+.-.++..+ ...+-.+.|+++|.+.+
T Consensus 703 ~~t~V~V~~~Drp-gLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD-~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L 777 (895)
T PRK00275 703 GGTQIFIYAPDQH-DFFAATVAAMDQLNLNIHDARIITSSSQFTLD-TYIVLDDDGEPIGDNPARIEQIREGLTEAL 777 (895)
T ss_pred CeEEEEEEeCCCC-cHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEE-EEEEeCCCCCCccchHHHHHHHHHHHHHHH
Confidence 5678999999999 999999999999999999999854 5566777 455554444442 22244455666655543
No 51
>PRK04435 hypothetical protein; Provisional
Probab=95.42 E-value=0.12 Score=43.22 Aligned_cols=70 Identities=14% Similarity=0.136 Sum_probs=51.7
Q ss_pred EeCCeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 179 VSDNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 179 ~~~~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
..|+.+.|.+.+.+++ |+|.+|++.|.+.|+.|...+.....+...+++|...+.+.. ..+++|..+|++
T Consensus 65 ~~~r~vtL~i~l~Dr~-GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~-~~L~~Li~~L~~ 134 (147)
T PRK04435 65 VKGKIITLSLLLEDRS-GTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSME-GDIDELLEKLRN 134 (147)
T ss_pred CCCcEEEEEEEEecCC-CHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChH-HHHHHHHHHHHc
Confidence 5688899999999999 999999999999999998887654333334456666765531 235666666553
No 52
>PRK05092 PII uridylyl-transferase; Provisional
Probab=95.37 E-value=0.15 Score=54.39 Aligned_cols=82 Identities=16% Similarity=0.115 Sum_probs=57.1
Q ss_pred CceEEEEe--CCeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEE-eCCeEEEEEEEEEecCceecCHHHHHHHHH
Q 038298 173 PDIVVRVS--DNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIP-FGNYALDITVVAQMEVEFCLTVKELVKNLR 249 (259)
Q Consensus 173 p~VeV~~~--~~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~-~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~ 249 (259)
+.|.++.. .+...|.|.|.+++ |+|.+|..+|..+|++|+.|.+.+ .++.+++ +|.++-.++......+-...|.
T Consensus 720 ~~v~~~~~~~~~~t~v~I~~~Dr~-GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD-~F~V~~~~g~~~~~~~~~~~l~ 797 (931)
T PRK05092 720 LATEVRPDPARGVTEVTVLAADHP-GLFSRIAGACAAAGANIVDARIFTTTDGRALD-TFWIQDAFGRDEDEPRRLARLA 797 (931)
T ss_pred cEEEEEecCCCCeEEEEEEeCCCC-cHHHHHHHHHHHCCCcEEEEEEEEecCCeEEE-EEEEECCCCCCCCCHHHHHHHH
Confidence 45555433 35688999999999 999999999999999999999877 5666775 4555544433333333445555
Q ss_pred HHHHHHh
Q 038298 250 LALSKFI 256 (259)
Q Consensus 250 ~al~~~~ 256 (259)
++|.+++
T Consensus 798 ~~L~~~l 804 (931)
T PRK05092 798 KAIEDAL 804 (931)
T ss_pred HHHHHHH
Confidence 5555544
No 53
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=95.28 E-value=0.089 Score=38.21 Aligned_cols=63 Identities=11% Similarity=0.100 Sum_probs=43.4
Q ss_pred EEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCc-eecCHHHHHHHHHH
Q 038298 187 RIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVE-FCLTVKELVKNLRL 250 (259)
Q Consensus 187 ~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~-~~~t~~dl~~~L~~ 250 (259)
-+..++++ |.|.+|++.|.+.|+.+.+....+..+..-.+.|...++.. .....+++...|++
T Consensus 3 ~~~l~d~p-G~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 3 VFSLKNKP-GALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred EEEeCCcC-CHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 34557788 99999999999999999998877766543345556666543 22334555555544
No 54
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.10 E-value=0.13 Score=36.34 Aligned_cols=63 Identities=8% Similarity=0.184 Sum_probs=42.6
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCC-eEEEEEEEEEecCceecCHHHHHHHHH
Q 038298 184 VLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGN-YALDITVVAQMEVEFCLTVKELVKNLR 249 (259)
Q Consensus 184 v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~-~~l~~tI~aq~~~~~~~t~~dl~~~L~ 249 (259)
++|+|.+.+++ |.+.+++..|.+.++.+.+.......+ ....+.+.....+. -.++++...|+
T Consensus 1 ~yl~i~~~d~~-g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~i~~L~ 64 (79)
T cd04881 1 YYLRLTVKDKP-GVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSE--AALNAALAEIE 64 (79)
T ss_pred CEEEEEeCCCC-cHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCH--HHHHHHHHHHH
Confidence 36899999999 999999999999999999887665432 32223444444332 22444555544
No 55
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.49 E-value=0.22 Score=36.33 Aligned_cols=40 Identities=18% Similarity=0.365 Sum_probs=36.4
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEE
Q 038298 185 LIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYAL 225 (259)
Q Consensus 185 ~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l 225 (259)
.|.|.|+++. |+-.++.+.+-+.||.|+...+++.|..-+
T Consensus 2 vitvnCPDkt-GLgcdlcr~il~fGl~i~rgd~sTDGkWCy 41 (69)
T cd04894 2 VITINCPDKT-GLGCDLCRIILEFGLNITRGDDSTDGRWCY 41 (69)
T ss_pred EEEEeCCCcc-CcccHHHHHHHHhceEEEecccccCCcEEE
Confidence 5889999999 999999999999999999999999777544
No 56
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=94.43 E-value=0.25 Score=36.42 Aligned_cols=50 Identities=8% Similarity=0.083 Sum_probs=38.0
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecC
Q 038298 185 LIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEV 235 (259)
Q Consensus 185 ~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~ 235 (259)
.|.+..++++ |.|.+|++.|.++|+.+++....+..+..-.+.|.++.+.
T Consensus 3 sl~~~~~d~~-G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~ 52 (80)
T cd04905 3 SIVFTLPNKP-GALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEG 52 (80)
T ss_pred EEEEEECCCC-CHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEEC
Confidence 3455667888 9999999999999999999887776554334566666664
No 57
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=94.42 E-value=0.33 Score=30.55 Aligned_cols=34 Identities=6% Similarity=0.213 Sum_probs=29.6
Q ss_pred EEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEe
Q 038298 186 IRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPF 220 (259)
Q Consensus 186 I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~ 220 (259)
|.+.|+..+ |.+.+++..|...++.+........
T Consensus 1 i~i~~~~~~-~~l~~i~~~l~~~~~~i~~~~~~~~ 34 (60)
T cd02116 1 LTVSGPDRP-GLLAKVLSVLAEAGINITSIEQRTS 34 (60)
T ss_pred CEEEecCCC-chHHHHHHHHHHCCCcEEEEEeEEc
Confidence 467888888 9999999999999999998887554
No 58
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=94.19 E-value=0.28 Score=35.64 Aligned_cols=46 Identities=11% Similarity=0.144 Sum_probs=36.6
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecC
Q 038298 185 LIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEV 235 (259)
Q Consensus 185 ~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~ 235 (259)
.|+|.|.+++ |+|.+|+.++.+++..+.+.++.+- +. ++ +..++.+
T Consensus 2 ~l~I~~~dr~-Gll~dI~~~i~~~~~nI~~~~~~~~-~~-i~--l~i~v~~ 47 (74)
T cd04877 2 RLEITCEDRL-GITQEVLDLLVEHNIDLRGIEIDPK-GR-IY--LNFPTIE 47 (74)
T ss_pred EEEEEEEccc-hHHHHHHHHHHHCCCceEEEEEecC-Ce-EE--EEeEecC
Confidence 4789999999 9999999999999999999998664 33 43 4445554
No 59
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=94.18 E-value=0.49 Score=31.46 Aligned_cols=49 Identities=14% Similarity=0.246 Sum_probs=36.4
Q ss_pred EEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecC
Q 038298 186 IRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEV 235 (259)
Q Consensus 186 I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~ 235 (259)
|+|.|.+++ |.+.++++.|.++++++.+..+...++....+.|......
T Consensus 1 l~v~~~~~~-~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 49 (71)
T cd04876 1 IRVEAIDRP-GLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRD 49 (71)
T ss_pred CEEEEeccC-cHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECC
Confidence 467889999 9999999999999999999887665533332344444443
No 60
>PRK08577 hypothetical protein; Provisional
Probab=94.11 E-value=0.63 Score=38.07 Aligned_cols=66 Identities=12% Similarity=0.239 Sum_probs=47.8
Q ss_pred CeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeC-CeEEEEEEEEEecCceecCHHHHHHHHH
Q 038298 182 NNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFG-NYALDITVVAQMEVEFCLTVKELVKNLR 249 (259)
Q Consensus 182 ~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~-~~~l~~tI~aq~~~~~~~t~~dl~~~L~ 249 (259)
+.+.|.|.+.+++ |+|.+|+..|.++++.+.+.+..+.. +....+.+...+.+.. ..++++.+.|+
T Consensus 55 ~~~~I~V~~~Dr~-GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~-~~l~~l~~~L~ 121 (136)
T PRK08577 55 KLVEIELVVEDRP-GVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSD-IDLEELEEELK 121 (136)
T ss_pred cEEEEEEEEcCCC-CHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCch-hhHHHHHHHHH
Confidence 3678899999999 99999999999999999988776654 4444455666776531 23455555554
No 61
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.88 E-value=0.41 Score=34.35 Aligned_cols=63 Identities=13% Similarity=0.116 Sum_probs=41.1
Q ss_pred EEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEe--CCeEEEEEEEEEecCceecCHHHHHHHHHHH
Q 038298 186 IRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPF--GNYALDITVVAQMEVEFCLTVKELVKNLRLA 251 (259)
Q Consensus 186 I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~--~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~a 251 (259)
+.+.-++++ |.|.++++.|.++|+.|++...... +.....+.|...++... ..++|.+.|++.
T Consensus 2 l~v~~~d~p-G~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~--~~~~i~~~L~~~ 66 (72)
T cd04884 2 FTFLLEDKP-GTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRS--KENELIEELKAK 66 (72)
T ss_pred EEEEecCCC-ccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecch--HHHHHHHHHhCc
Confidence 456778999 9999999999999999998876554 23232344444443211 145555555443
No 62
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=93.79 E-value=0.047 Score=53.91 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=51.2
Q ss_pred CCCCCcchhhhhhHHHHHHHHHHHHhHHHHhccCCC----CCCCCccchHHHHHHHHHHHHHHHHHH
Q 038298 88 VASRSPLQAQEHVIAERKRREKMNQQFIALSAVIPG----IKQMNKASVLEGTIKHLKELQERGKKL 150 (259)
Q Consensus 88 ~~~r~~~~~~~h~~~ER~RR~k~n~~~~~LrslvP~----~~k~dK~siL~~ai~YIk~Lq~~v~~L 150 (259)
+..|...+++..++.||-|=..||+.|.+|-.+.-. .....|.-||..|+.-|-.|++||.+-
T Consensus 519 kaeREkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 519 KAEREKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred hhhHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 344555678889999999988999999999776542 244568999999999999999999874
No 63
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=93.74 E-value=0.66 Score=31.96 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=41.2
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEe-CCeEEEEEEEEEecCceecCHHHHHHHHH
Q 038298 185 LIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPF-GNYALDITVVAQMEVEFCLTVKELVKNLR 249 (259)
Q Consensus 185 ~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~-~~~~l~~tI~aq~~~~~~~t~~dl~~~L~ 249 (259)
.|.|.+.+++ |.|.+|+..|.+.++.+.+.+.... ++....+.|...+.+ -.++++...|+
T Consensus 2 ~l~i~~~d~~-g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~ 63 (72)
T cd04878 2 TLSVLVENEP-GVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDD---DVIEQIVKQLN 63 (72)
T ss_pred EEEEEEcCCC-cHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCH---HHHHHHHHHHh
Confidence 4677888999 9999999999999999988887654 344333444444421 23444444443
No 64
>PRK04374 PII uridylyl-transferase; Provisional
Probab=93.71 E-value=0.41 Score=50.80 Aligned_cols=71 Identities=11% Similarity=0.226 Sum_probs=51.1
Q ss_pred CCeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEE-eCCeEEEEEEEEEecCceecCHHHHHHHHHHHHHHHh
Q 038298 181 DNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIP-FGNYALDITVVAQMEVEFCLTVKELVKNLRLALSKFI 256 (259)
Q Consensus 181 ~~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~-~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~~~ 256 (259)
.+...|-|.|.+++ |+|++|..+|..+||+|+.|.+.+ .++.+++ +|.+.-.++.. .++ ..+|+++|.+.+
T Consensus 688 ~~~~~v~v~~~d~~-gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld-~f~V~~~~~~~--~~~-~~~i~~~l~~~l 759 (869)
T PRK04374 688 NDALEVFVYSPDRD-GLFAAIVATLDRKGYGIHRARVLDAPHDAIFD-VFEVLPQDTYA--DGD-PQRLAAALRQVL 759 (869)
T ss_pred CCeEEEEEEeCCCc-cHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEE-EEEEeCCCCCC--hHH-HHHHHHHHHHHH
Confidence 35678899999999 999999999999999999999877 5666776 45554333322 222 333566655544
No 65
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.66 E-value=0.6 Score=36.00 Aligned_cols=51 Identities=6% Similarity=0.127 Sum_probs=40.0
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecC
Q 038298 184 VLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEV 235 (259)
Q Consensus 184 v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~ 235 (259)
..|-+.+++++ |.|.++|..|...|+.+.+-..-+..+..-.|.|...++.
T Consensus 15 tslif~l~~~p-GsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg 65 (90)
T cd04931 15 ISLIFSLKEEV-GALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDK 65 (90)
T ss_pred EEEEEEcCCCC-cHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEc
Confidence 45556668888 9999999999999999999888877665545566666654
No 66
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.51 E-value=0.85 Score=31.55 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=40.4
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHH
Q 038298 185 LIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLR 249 (259)
Q Consensus 185 ~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~ 249 (259)
.|.+.+..++ |.|.+++..|.+.++.+.+.+.....+....++ ..+.+. -..+++.+.|+
T Consensus 2 ~l~i~~~d~~-g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~--i~~~~~--~~~~~~~~~L~ 61 (72)
T cd04874 2 ALSIIAEDKP-GVLRDLTGVIAEHGGNITYTQQFIEREGKARIY--MELEGV--GDIEELVEELR 61 (72)
T ss_pred eEEEEeCCCC-ChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEE--EEEecc--ccHHHHHHHHh
Confidence 4678899999 999999999999999999887765433333233 344432 23444444443
No 67
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=92.88 E-value=0.074 Score=45.06 Aligned_cols=53 Identities=25% Similarity=0.332 Sum_probs=46.6
Q ss_pred hhhhhhHHHHHHHHHHHHhHHHHhccCCC--CCCCCccchHHHHHHHHHHHHHHH
Q 038298 95 QAQEHVIAERKRREKMNQQFIALSAVIPG--IKQMNKASVLEGTIKHLKELQERG 147 (259)
Q Consensus 95 ~~~~h~~~ER~RR~k~n~~~~~LrslvP~--~~k~dK~siL~~ai~YIk~Lq~~v 147 (259)
++.-|+.-||+|=..+|+.|.+||.++|. ..|..|.--|.-|..||..|-+=.
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl 132 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVL 132 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhcc
Confidence 57789999999999999999999999996 577788888999999999886533
No 68
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=92.61 E-value=1.1 Score=41.64 Aligned_cols=66 Identities=8% Similarity=0.116 Sum_probs=47.5
Q ss_pred eEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEE-eCCeEEEEEEEEEecCceecCHHHHHHHHHHH
Q 038298 183 NVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIP-FGNYALDITVVAQMEVEFCLTVKELVKNLRLA 251 (259)
Q Consensus 183 ~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~-~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~a 251 (259)
.+.|.|.|++++ |++.+|-+.|-++|++|.+.+..+ .++..+ +..+++......+.++|...|...
T Consensus 7 ~~vitv~G~Drp-GIVa~VT~~La~~~vNI~dls~~~~~~~~~F--~m~~~~~~p~~~~~~~L~~~L~~l 73 (286)
T PRK13011 7 TFVLTLSCPSAA-GIVAAVTGFLAEHGCYITELHSFDDRLSGRF--FMRVEFHSEEGLDEDALRAGFAPI 73 (286)
T ss_pred eEEEEEEeCCCC-CHHHHHHHHHHhCCCCEEEeeeeecCCCCeE--EEEEEEecCCCCCHHHHHHHHHHH
Confidence 477899999999 999999999999999999988753 344444 344555433345666666655544
No 69
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=92.51 E-value=0.94 Score=41.88 Aligned_cols=69 Identities=22% Similarity=0.301 Sum_probs=50.0
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeC--CeEEEEEEEEEecCceecCHHHHHHHHHHHHHHHh
Q 038298 185 LIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFG--NYALDITVVAQMEVEFCLTVKELVKNLRLALSKFI 256 (259)
Q Consensus 185 ~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~--~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~~~ 256 (259)
.|.+.|++++ |+...|-..|-+.|+.|++++.+... +.++ ..+.+.+.+ ...+.++|...|..++.+-+
T Consensus 2 ~itv~g~D~~-GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~-mr~~v~~~~-~~~~~~~l~~~l~~~~~~~~ 72 (280)
T TIGR00655 2 ILLVSCPDQK-GLVAAISTFIAKHGANIISNDQHTDPETGRFF-MRVEFQLEG-FRLEESSLLAAFKSALAEKF 72 (280)
T ss_pred EEEEECCCCC-ChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEE-EEEEEEeCC-CCCCHHHHHHHHHHHHHHHh
Confidence 4789999999 99999999999999999999977642 4432 234444442 24677888877777444433
No 70
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.15 E-value=1.2 Score=30.65 Aligned_cols=59 Identities=10% Similarity=0.149 Sum_probs=40.5
Q ss_pred EEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEe-CCeEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 186 IRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPF-GNYALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 186 I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~-~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
|.+.+.+++ |.+.+|+..|.++++.+.+...... ++..-. +...+++. ..+++.+.|++
T Consensus 2 l~i~~~d~~-g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~--i~i~v~~~---~~~~~i~~l~~ 61 (71)
T cd04903 2 LIVVHKDKP-GAIAKVTSVLADHEINIAFMRVSRKEKGDQAL--MVIEVDQP---IDEEVIEEIKK 61 (71)
T ss_pred EEEEeCCCC-ChHHHHHHHHHHcCcCeeeeEEEeccCCCeEE--EEEEeCCC---CCHHHHHHHHc
Confidence 677889999 9999999999999999988876553 222221 23455543 45566665553
No 71
>PRK07334 threonine dehydratase; Provisional
Probab=91.91 E-value=1.8 Score=41.72 Aligned_cols=65 Identities=12% Similarity=0.207 Sum_probs=48.3
Q ss_pred eEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEe----CCeEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 183 NVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPF----GNYALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 183 ~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~----~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
.+.|+|.+.+++ |+|.+|+..|.+.++.|.+.++.+. .+....+.|..++.+.. .+++|.++|++
T Consensus 326 ~v~l~I~~~dr~-GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~--~L~~vi~~Lr~ 394 (403)
T PRK07334 326 LARLRVDIRDRP-GALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAA--HLQEVIAALRA 394 (403)
T ss_pred EEEEEEEeCCCC-CHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHH--HHHHHHHHHHH
Confidence 488999999999 9999999999999999999887654 34444456666776532 24455555554
No 72
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.90 E-value=1.2 Score=31.27 Aligned_cols=35 Identities=9% Similarity=0.215 Sum_probs=30.6
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEe
Q 038298 185 LIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPF 220 (259)
Q Consensus 185 ~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~ 220 (259)
.+.+.+++++ |.|.++++.|.++|+.+........
T Consensus 3 ~~~v~~~d~~-G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 3 DLYVDVPDEP-GVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEcCCCC-CHHHHHHHHHHHcCCCceeeEeEEe
Confidence 4778899999 9999999999999999988765554
No 73
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=91.85 E-value=0.9 Score=33.20 Aligned_cols=48 Identities=10% Similarity=0.155 Sum_probs=38.3
Q ss_pred EEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecC
Q 038298 187 RIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEV 235 (259)
Q Consensus 187 ~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~ 235 (259)
-+..++++ |.|.++|..+...|+.+.+-..-+..+..-.|.|..+++.
T Consensus 4 ~f~l~~~p-G~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 4 IFSLKEEV-GALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred EEEeCCCC-cHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc
Confidence 34457788 9999999999999999999988887776555666666664
No 74
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=91.48 E-value=0.16 Score=50.84 Aligned_cols=40 Identities=25% Similarity=0.523 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhHHHHhccCCC----CCCCCccchHHHHHHHHH
Q 038298 102 AERKRREKMNQQFIALSAVIPG----IKQMNKASVLEGTIKHLK 141 (259)
Q Consensus 102 ~ER~RR~k~n~~~~~LrslvP~----~~k~dK~siL~~ai~YIk 141 (259)
.-++-|+++|.-++.|.+|+|. ++|.||.|||.-++-|++
T Consensus 32 PSKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 32 PSKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred cchhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 3466789999999999999996 699999999999999985
No 75
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.42 E-value=1.2 Score=30.51 Aligned_cols=56 Identities=9% Similarity=0.112 Sum_probs=38.3
Q ss_pred EEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeC--CeEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 186 IRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFG--NYALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 186 I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~--~~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
|.|.-+.++ |.|.+++..|.+.|+.|.+....... +.. .+...++. .+++.+.|++
T Consensus 2 i~v~~~d~p-G~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~---~v~~~ve~-----~~~~~~~L~~ 59 (65)
T cd04882 2 LAVEVPDKP-GGLHEILQILSEEGINIEYMYAFVEKKGGKA---LLIFRTED-----IEKAIEVLQE 59 (65)
T ss_pred EEEEeCCCC-cHHHHHHHHHHHCCCChhheEEEccCCCCeE---EEEEEeCC-----HHHHHHHHHH
Confidence 567788999 99999999999999999776654433 222 23445553 4455555554
No 76
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=91.28 E-value=1.3 Score=41.14 Aligned_cols=66 Identities=6% Similarity=0.212 Sum_probs=45.6
Q ss_pred eEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEE--EeCC-eEEEEEEEEEecCceecCHHHHHHHHHHH
Q 038298 183 NVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTI--PFGN-YALDITVVAQMEVEFCLTVKELVKNLRLA 251 (259)
Q Consensus 183 ~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs--~~~~-~~l~~tI~aq~~~~~~~t~~dl~~~L~~a 251 (259)
.+.|.|.|++++ |+...|-..|-+.|+.|++.+-. +..+ +++-+.+.. .....++.++|...|...
T Consensus 9 ~~iitv~G~Dr~-GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~--~~~~~~~~~~l~~~l~~l 77 (289)
T PRK13010 9 SYVLTLACPSAP-GIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHA--QSAEAASVDTFRQEFQPV 77 (289)
T ss_pred CEEEEEECCCCC-CcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEc--CCCCCCCHHHHHHHHHHH
Confidence 467999999999 99999999999999999999874 2233 333222221 122245667776666553
No 77
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.16 E-value=1.3 Score=31.55 Aligned_cols=60 Identities=12% Similarity=0.077 Sum_probs=40.0
Q ss_pred EEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 187 RIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 187 ~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
+|.-+.+| |-|.++++.|.+ |.+|+..+....+...-.++|..+..+.. ..++|.+.|++
T Consensus 2 ~v~ipdkP-G~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~--~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERP-GALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDRE--DLAELKERLEA 61 (68)
T ss_pred EEECCCCC-CHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHH--HHHHHHHHHHH
Confidence 56778999 999999999999 99998877655433223345556666532 24455554443
No 78
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.08 E-value=1.5 Score=46.11 Aligned_cols=79 Identities=16% Similarity=0.219 Sum_probs=57.8
Q ss_pred ceEEEEeCCeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEE-eCCeEEEEEEEEEecCceecCHHHHHHHHHHHH
Q 038298 174 DIVVRVSDNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIP-FGNYALDITVVAQMEVEFCLTVKELVKNLRLAL 252 (259)
Q Consensus 174 ~VeV~~~~~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~-~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al 252 (259)
.+.++...+...|.|.|+.++ .+|+.+..++...|++|+.|.|.+ .+|+.++ ||.+...++..+. +|-...++..|
T Consensus 675 ~~~~r~~~~~teV~V~a~d~p-~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alD-tfiv~~~~g~~~~-~dr~~~~~~~l 751 (867)
T COG2844 675 LISVRPHSGGTEVFVYAPDRP-RLFAVVCAALSRRGLSIVDAQIFTTRDGYALD-TFIVLEPDGFPVE-EDRRAALRGEL 751 (867)
T ss_pred eeeecccCCceEEEEEcCCCc-cHHHHHHHHHccCCCceeeeEEEEccCCceee-eEEEecCCCCccc-hhHHHHHHHHH
Confidence 344566677789999999999 999999999999999999999755 5556998 5555554555555 44444444544
Q ss_pred HHH
Q 038298 253 SKF 255 (259)
Q Consensus 253 ~~~ 255 (259)
...
T Consensus 752 ~~~ 754 (867)
T COG2844 752 IEA 754 (867)
T ss_pred HHH
Confidence 443
No 79
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=90.96 E-value=1.8 Score=29.48 Aligned_cols=59 Identities=8% Similarity=0.104 Sum_probs=41.1
Q ss_pred EEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeC-CeEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 186 IRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFG-NYALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 186 I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~-~~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
+.|.+..++ |.+.+|++.|.+.|+.+.+..+...+ +....++| .+++. ..+++.+.|+.
T Consensus 2 l~v~~~d~~-g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~--~v~~~---~~~~l~~~l~~ 61 (71)
T cd04879 2 LLIVHKDVP-GVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVL--DVDSP---VPEEVLEELKA 61 (71)
T ss_pred EEEEecCCC-CHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEE--EcCCC---CCHHHHHHHHc
Confidence 567888999 99999999999999999998876654 22222344 33332 34566666654
No 80
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=90.86 E-value=2.5 Score=29.79 Aligned_cols=46 Identities=4% Similarity=0.081 Sum_probs=35.4
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEec
Q 038298 185 LIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQME 234 (259)
Q Consensus 185 ~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~ 234 (259)
.|.|..++++ |.|.+|++.|.+.|+.|.+..+...++. ..+....+
T Consensus 3 ri~v~v~d~p-G~La~v~~~l~~~~inI~~i~~~~~~~~---~~~rl~~~ 48 (66)
T cd04908 3 QLSVFLENKP-GRLAAVTEILSEAGINIRALSIADTSEF---GILRLIVS 48 (66)
T ss_pred EEEEEEcCCC-ChHHHHHHHHHHCCCCEEEEEEEecCCC---CEEEEEEC
Confidence 3667889999 9999999999999999988876665553 23444444
No 81
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.85 E-value=1.4 Score=32.52 Aligned_cols=48 Identities=8% Similarity=0.168 Sum_probs=36.8
Q ss_pred EEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCc
Q 038298 188 IHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVE 236 (259)
Q Consensus 188 I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~ 236 (259)
+..+.++ |.|.++|..++..|+.+.+-..-+..+..-.|.|...++..
T Consensus 5 ~~l~~~~-g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~ 52 (74)
T cd04929 5 FSLKNEV-GGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECD 52 (74)
T ss_pred EEcCCCC-cHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC
Confidence 3446778 99999999999999999998887766654455666666543
No 82
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=90.60 E-value=1.9 Score=39.90 Aligned_cols=65 Identities=6% Similarity=0.164 Sum_probs=47.9
Q ss_pred eEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEE--eCCeEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 183 NVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIP--FGNYALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 183 ~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~--~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
.+.|.+.|++++ |++..|-++|-++|+.+.+++.++ .++. +...+.+.++ ....+.++|...|..
T Consensus 6 ~~vitv~G~Drp-GIVa~Vt~~La~~g~NI~d~s~~~~~~~g~-F~m~i~v~~~-~~~~~~~~L~~~L~~ 72 (286)
T PRK06027 6 RYVLTLSCPDRP-GIVAAVSNFLYEHGGNIVDADQFVDPETGR-FFMRVEFEGD-GLIFNLETLRADFAA 72 (286)
T ss_pred eEEEEEECCCCC-cHHHHHHHHHHHCCCCEEEceeEEcCCCCe-EEEEEEEEeC-CCCCCHHHHHHHHHH
Confidence 577899999999 999999999999999999999888 7774 3334444442 223455566555543
No 83
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.61 E-value=4.7 Score=28.27 Aligned_cols=59 Identities=12% Similarity=0.250 Sum_probs=39.4
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEe--CCeEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 185 LIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPF--GNYALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 185 ~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~--~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
.|.+.+++++ |.|.++++.|.+.|+.+.+...... ++... +.|.....+ .+++.+.|++
T Consensus 3 ~~~v~~~d~p-G~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~-v~i~v~~~~-----~~~~~~~L~~ 63 (72)
T cd04883 3 QIEVRVPDRP-GQLADIAAIFKDRGVNIVSVLVYPSKEEDNKI-LVFRVQTMN-----PRPIIEDLRR 63 (72)
T ss_pred EEEEEECCCC-CHHHHHHHHHHHcCCCEEEEEEeccCCCCeEE-EEEEEecCC-----HHHHHHHHHH
Confidence 5677889999 9999999999999999987754332 22222 344443322 3455666554
No 84
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=87.30 E-value=0.33 Score=44.33 Aligned_cols=54 Identities=26% Similarity=0.304 Sum_probs=45.9
Q ss_pred cchhhhhhHHHHHHHHHHHHhHHHHhccCCC---CCCCCccchHHHHHHHHHHHHHH
Q 038298 93 PLQAQEHVIAERKRREKMNQQFIALSAVIPG---IKQMNKASVLEGTIKHLKELQER 146 (259)
Q Consensus 93 ~~~~~~h~~~ER~RR~k~n~~~~~LrslvP~---~~k~dK~siL~~ai~YIk~Lq~~ 146 (259)
..++..=+.-||+|--.+|+-|..||.++|. ..|+.|.-.|.-|-+||..|++-
T Consensus 70 ~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 70 TLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV 126 (254)
T ss_pred hhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence 3456677889999999999999999999995 47788888999999999988753
No 85
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=86.58 E-value=6 Score=33.77 Aligned_cols=48 Identities=13% Similarity=0.127 Sum_probs=39.0
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeC-CeEEEEEEEEEe
Q 038298 185 LIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFG-NYALDITVVAQM 233 (259)
Q Consensus 185 ~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~-~~~l~~tI~aq~ 233 (259)
.|.|..++++ |.|.+|...|...|+.+.+..+.... +....++|++.-
T Consensus 4 ~IsV~veN~p-GvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~ 52 (161)
T PRK11895 4 TLSVLVENEP-GVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG 52 (161)
T ss_pred EEEEEEcCCC-cHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC
Confidence 5778889999 99999999999999999998887765 344446676654
No 86
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=86.13 E-value=0.7 Score=45.01 Aligned_cols=43 Identities=40% Similarity=0.498 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhHHHHhccCCCC----CCCCccchHHHHHHHHHHHH
Q 038298 102 AERKRREKMNQQFIALSAVIPGI----KQMNKASVLEGTIKHLKELQ 144 (259)
Q Consensus 102 ~ER~RR~k~n~~~~~LrslvP~~----~k~dK~siL~~ai~YIk~Lq 144 (259)
+-|.||++-|-.|..|..++|-. +..||++|+.-|..|||--.
T Consensus 8 aA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr~ 54 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMRN 54 (598)
T ss_pred HHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHHH
Confidence 55999999999999999999963 66999999999999998543
No 87
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.81 E-value=4.1 Score=32.75 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=38.5
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecC
Q 038298 184 VLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEV 235 (259)
Q Consensus 184 v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~ 235 (259)
..|-+..++++ |.|.++|..+...|+.+.+-..-+..+..-.|.|...++.
T Consensus 42 tSlifsl~~~p-GsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg 92 (115)
T cd04930 42 ATLLFSLKEGF-SSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEV 92 (115)
T ss_pred EEEEEEeCCCC-cHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEe
Confidence 34555557888 9999999999999999999888777555444555556554
No 88
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=85.50 E-value=0.66 Score=47.75 Aligned_cols=45 Identities=33% Similarity=0.458 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHHHHHhHHHHhccCCC----CCCCCccchHHHHHHHHHH
Q 038298 98 EHVIAERKRREKMNQQFIALSAVIPG----IKQMNKASVLEGTIKHLKE 142 (259)
Q Consensus 98 ~h~~~ER~RR~k~n~~~~~LrslvP~----~~k~dK~siL~~ai~YIk~ 142 (259)
.-..+-|-||.|=|+-|+.|..+||- .+..|||||+.-||-|++-
T Consensus 49 kSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 49 KSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 33446799999999999999999994 3778999999999999873
No 89
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=85.15 E-value=8.1 Score=32.80 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=39.4
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeC-CeEEEEEEEEEe
Q 038298 185 LIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFG-NYALDITVVAQM 233 (259)
Q Consensus 185 ~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~-~~~l~~tI~aq~ 233 (259)
.|.|..++++ |.|.+|...|...|+.+.+..+.+.+ +....+||++.-
T Consensus 3 ~isI~ven~p-GvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~ 51 (157)
T TIGR00119 3 ILSVLVENEP-GVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG 51 (157)
T ss_pred EEEEEEcCCC-cHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC
Confidence 5778889999 99999999999999999998888776 344456676654
No 90
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=85.00 E-value=4.5 Score=42.13 Aligned_cols=52 Identities=10% Similarity=0.060 Sum_probs=43.9
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCc
Q 038298 184 VLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVE 236 (259)
Q Consensus 184 v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~ 236 (259)
+.|+|.+.+++ |+|.+|+.+|-+.++.|.+.++....+....+.|..++.+-
T Consensus 627 v~i~I~~~dr~-GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~ 678 (702)
T PRK11092 627 AEIKVEMFNHQ-GALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARDR 678 (702)
T ss_pred EEEEEEEeCCC-CHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECCH
Confidence 56888999999 99999999999999999999987765555556777888864
No 91
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=84.94 E-value=2.9 Score=36.52 Aligned_cols=42 Identities=14% Similarity=0.210 Sum_probs=38.6
Q ss_pred CeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeE
Q 038298 182 NNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYA 224 (259)
Q Consensus 182 ~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~ 224 (259)
..++|.+.+++++ |++..|-++|.++|..++.++.+.+++.+
T Consensus 7 ~~lviTviG~Drp-GIVa~vs~~l~~~g~NI~ds~~t~lgg~F 48 (190)
T PRK11589 7 HYLVITALGADRP-GIVNTITRHVSSCGCNIEDSRLAMLGEEF 48 (190)
T ss_pred cEEEEEEEcCCCC-hHHHHHHHHHHHcCCCeeehhhHhhCCce
Confidence 4578899999999 99999999999999999999999999864
No 92
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=84.68 E-value=6.2 Score=33.01 Aligned_cols=66 Identities=20% Similarity=0.376 Sum_probs=46.8
Q ss_pred CCeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEE-EEEeCCeEEEEEEEEEecCceecCHHHHHHHHH
Q 038298 181 DNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSR-TIPFGNYALDITVVAQMEVEFCLTVKELVKNLR 249 (259)
Q Consensus 181 ~~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~as-vs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~ 249 (259)
+..+-+.+..+++. |.|+++|+++-..++.|+..+ -.+..++.- +|+...... -...+++++.+|+
T Consensus 70 ~ri~TL~l~ledr~-G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~An-vtlsi~~ss-m~~~V~~ii~kl~ 136 (150)
T COG4492 70 ERIITLSLSLEDRV-GILSDVLDVIAREEINVLTIHQTIPLQGRAN-VTLSIDTSS-MEKDVDKIIEKLR 136 (150)
T ss_pred ceEEEEEEEEhhhh-hhHHHHHHHHHHhCCcEEEEecccccCceee-EEEEEEchh-hhhhHHHHHHHHh
Confidence 45577888999999 999999999999999998876 355677653 565554442 1234556665554
No 93
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=84.52 E-value=4.9 Score=27.05 Aligned_cols=35 Identities=6% Similarity=0.145 Sum_probs=29.8
Q ss_pred EEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeC
Q 038298 186 IRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFG 221 (259)
Q Consensus 186 I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~ 221 (259)
|.|.++.++ |.|.+++..|.+.|+.|....+...+
T Consensus 1 ~~v~~~d~~-G~l~~i~~~l~~~~inI~~~~~~~~~ 35 (56)
T cd04889 1 LSVFVENKP-GRLAEVTEILAEAGINIKAISIAETR 35 (56)
T ss_pred CEEEeCCCC-ChHHHHHHHHHHcCCCEeeEEEEEcc
Confidence 356788999 99999999999999999887766544
No 94
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=83.93 E-value=5.8 Score=41.60 Aligned_cols=52 Identities=10% Similarity=0.210 Sum_probs=42.5
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeC-CeEEEEEEEEEecCc
Q 038298 184 VLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFG-NYALDITVVAQMEVE 236 (259)
Q Consensus 184 v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~-~~~l~~tI~aq~~~~ 236 (259)
+.|.|.+.+++ |+|.+|..+|.+.++.|.+.++.... +....+.|..++.+-
T Consensus 667 v~I~I~~~Dr~-GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~ 719 (743)
T PRK10872 667 LVVRVTANDRS-GLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNL 719 (743)
T ss_pred EEEEEEEcCCC-CHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCH
Confidence 56788999999 99999999999999999999986643 444446677788764
No 95
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=83.40 E-value=1.5 Score=30.65 Aligned_cols=57 Identities=14% Similarity=0.242 Sum_probs=37.2
Q ss_pred EEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 187 RIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 187 ~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
-+.+.+++ |++.+|+..|.+.|+.+...+....++... +.+ .++.. .++++.++|++
T Consensus 3 ~~~~~d~~-g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~-~~~--~~~~~---~l~~li~~l~~ 59 (69)
T cd04901 3 LHIHKNVP-GVLGQINTILAEHNINIAAQYLQTRGEIGY-VVI--DIDSE---VSEELLEALRA 59 (69)
T ss_pred EEEecCCC-cHHHHHHHHHHHcCCCHHHHhccCCCCEEE-EEE--EcCCC---CCHHHHHHHHc
Confidence 35778889 999999999999999986655433333322 223 34432 45566666653
No 96
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=83.09 E-value=2 Score=39.35 Aligned_cols=53 Identities=23% Similarity=0.194 Sum_probs=43.9
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHhccCCCC---CCCCccchHHHHHHHHHHHHHHHH
Q 038298 96 AQEHVIAERKRREKMNQQFIALSAVIPGI---KQMNKASVLEGTIKHLKELQERGK 148 (259)
Q Consensus 96 ~~~h~~~ER~RR~k~n~~~~~LrslvP~~---~k~dK~siL~~ai~YIk~Lq~~v~ 148 (259)
+..-+..||+|-..+|..|+.||..||.. .|..|..-|.-|-.||--|-....
T Consensus 175 r~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 175 RLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred hcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 44557789999999999999999999975 566677789999999988876653
No 97
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=83.04 E-value=6.1 Score=41.00 Aligned_cols=53 Identities=15% Similarity=0.264 Sum_probs=44.0
Q ss_pred eEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCc
Q 038298 183 NVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVE 236 (259)
Q Consensus 183 ~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~ 236 (259)
.+.|+|.+.+++ |+|.+|+.+|-+.+..|.+.++....+....+.|..++.+-
T Consensus 610 ~v~I~I~~~dr~-GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~ 662 (683)
T TIGR00691 610 IVDINIEAVDRK-GVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKNY 662 (683)
T ss_pred EEEEEEEEecCC-CHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECCH
Confidence 356888999999 99999999999999999999987765555556777788864
No 98
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=81.90 E-value=12 Score=28.60 Aligned_cols=51 Identities=8% Similarity=0.208 Sum_probs=40.6
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEE-EEEEEEEecCc
Q 038298 185 LIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYAL-DITVVAQMEVE 236 (259)
Q Consensus 185 ~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l-~~tI~aq~~~~ 236 (259)
.|.+..++++ |.|.+|...|...|+.+.+-++....+.-+ .+||.+..+++
T Consensus 4 ~isvlVeN~~-GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~ 55 (84)
T PRK13562 4 ILKLQVADQV-STLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDD 55 (84)
T ss_pred EEEEEEECCC-CHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCH
Confidence 5778889999 999999999999999998888877666433 36777765543
No 99
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.89 E-value=13 Score=27.61 Aligned_cols=63 Identities=13% Similarity=0.094 Sum_probs=38.0
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 184 VLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 184 v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
.++.|.-+.+| |-|.++++.|- +..|............-.+.|..++.++ .-..+++.+.|++
T Consensus 2 ~vl~v~ipD~P-G~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~-~~~~~~i~~~L~~ 64 (85)
T cd04906 2 ALLAVTIPERP-GSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANG-AEELAELLEDLKS 64 (85)
T ss_pred eEEEEecCCCC-cHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCc-HHHHHHHHHHHHH
Confidence 46888999999 99999999998 6666655544333222224455666551 1123444444443
No 100
>PRK08198 threonine dehydratase; Provisional
Probab=80.66 E-value=13 Score=35.67 Aligned_cols=68 Identities=16% Similarity=0.240 Sum_probs=48.5
Q ss_pred eCCeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEe----CCeEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 180 SDNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPF----GNYALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 180 ~~~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~----~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
.+..+.+.|.-++++ |.|.++++.|-+.|..|+..+.... ......++|..+..+.. ..++|.+.|++
T Consensus 324 ~gr~~~l~v~l~D~P-G~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~--~~~~l~~~L~~ 395 (404)
T PRK08198 324 AGRYLKLRVRLPDRP-GQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPE--HIEEILDALRD 395 (404)
T ss_pred cCCEEEEEEEeCCCC-CHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHH--HHHHHHHHHHH
Confidence 355678999999999 9999999999999999988776542 22233456666665432 35566666654
No 101
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=79.92 E-value=10 Score=35.19 Aligned_cols=65 Identities=14% Similarity=0.175 Sum_probs=44.4
Q ss_pred CeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEe--CCeEEEEEEEEEecCce-ecCHHHHHHHHHH
Q 038298 182 NNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPF--GNYALDITVVAQMEVEF-CLTVKELVKNLRL 250 (259)
Q Consensus 182 ~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~--~~~~l~~tI~aq~~~~~-~~t~~dl~~~L~~ 250 (259)
..+.+.++|+.++ |+...|-..|-+.|..|++++-... ++++ +..+....+. ..+.+.|.+.+..
T Consensus 6 ~~~~LtvsCpd~~-GiVaais~~l~~~g~NI~~~~qf~D~~~g~F---FmR~~f~~~~~~~~~~~l~~~f~~ 73 (287)
T COG0788 6 DTFILTVSCPDQP-GIVAAISGFLAEHGCNIVDSDQFDDPETGRF---FMRVEFEGEGGPLDREALRAAFAP 73 (287)
T ss_pred cceEEEEecCCCC-CcHHHHHHHHHHcCCceeecccccccccCeE---EEEEEEecCCCcccHHHHHHHHHH
Confidence 3477899999999 9999999999999999999885532 2222 3344443332 2555555444443
No 102
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=79.46 E-value=15 Score=32.17 Aligned_cols=65 Identities=9% Similarity=0.165 Sum_probs=44.9
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCC-----eEEEEEEEEEecCceecCHHHHHHHHHHH
Q 038298 184 VLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGN-----YALDITVVAQMEVEFCLTVKELVKNLRLA 251 (259)
Q Consensus 184 v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~-----~~l~~tI~aq~~~~~~~t~~dl~~~L~~a 251 (259)
+.|.|...+++ |++.+|-+.|-++|+.|.+-+.-+.+. ..+...+.+.+.. ...+++|...|...
T Consensus 96 ~~v~v~G~DrP-GIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~--~~~~~~L~~~l~~l 165 (190)
T PRK11589 96 VWVQVEVADSP-HLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPA--SQDAANIEQAFKAL 165 (190)
T ss_pred EEEEEEECCCC-CHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCC--CCCHHHHHHHHHHH
Confidence 67888899999 999999999999999997766555442 2343344444444 34555655555443
No 103
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=78.57 E-value=8.9 Score=26.70 Aligned_cols=58 Identities=14% Similarity=0.251 Sum_probs=37.9
Q ss_pred EEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEE--eCCeEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 186 IRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIP--FGNYALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 186 I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~--~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
+-+..+.++ |.+.++.+.|.++|+.+.+..+.. .++... +.| .++.. . ..++.+.|++
T Consensus 2 l~v~~~d~~-G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~-~~i--~v~~~--~-~~~~~~~l~~ 61 (73)
T cd04902 2 LVVRNTDRP-GVIGKVGTILGEAGINIAGMQVGRDEPGGEAL-MVL--SVDEP--V-PDEVLEELRA 61 (73)
T ss_pred EEEEeCCCC-CHHHHHHHHHHHcCcChhheEeeccCCCCEEE-EEE--EeCCC--C-CHHHHHHHHc
Confidence 345778899 999999999999999997776544 234443 333 44432 1 3455555543
No 104
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=77.82 E-value=18 Score=40.97 Aligned_cols=74 Identities=16% Similarity=0.133 Sum_probs=56.3
Q ss_pred CeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEE---EEEe-CCeEEEEEEEEEecCceecCHHHHHHHHHHHHHHHh
Q 038298 182 NNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSR---TIPF-GNYALDITVVAQMEVEFCLTVKELVKNLRLALSKFI 256 (259)
Q Consensus 182 ~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~as---vs~~-~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~~~ 256 (259)
+.+.++|.....+ ..|++||-.|+++||.|+.-. +.+- +..+.-+.|..+..++......++.+.+.++|..+.
T Consensus 488 ~~~~lkiy~~~~~-~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~~v~ 565 (1528)
T PF05088_consen 488 GRLRLKIYHPGEP-LPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFEAVW 565 (1528)
T ss_pred CeEEEEEEcCCCC-cCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHHHHh
Confidence 4588899887777 899999999999999998865 3332 222322357777777777788899999999988764
No 105
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=76.53 E-value=22 Score=26.64 Aligned_cols=47 Identities=4% Similarity=-0.005 Sum_probs=37.5
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCe-EEEEEEEEE
Q 038298 185 LIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNY-ALDITVVAQ 232 (259)
Q Consensus 185 ~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~-~l~~tI~aq 232 (259)
.|.+..++++ |.|.+|...+..-|+.+-+-++...++. +-.+||.+.
T Consensus 4 tisi~v~n~p-GVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~ 51 (76)
T PRK06737 4 TFSLVIHNDP-SVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV 51 (76)
T ss_pred EEEEEEecCC-CHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE
Confidence 5778888999 9999999999999999998888765543 334666654
No 106
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=76.47 E-value=18 Score=34.32 Aligned_cols=67 Identities=12% Similarity=0.110 Sum_probs=45.6
Q ss_pred CCeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEe----CCeEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 181 DNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPF----GNYALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 181 ~~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~----~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
+..+.+.|.-++++ |.|.++++.+.+.|.+|++...... ......++|..+..+. -..++|.+.|++
T Consensus 303 gr~~~l~v~l~D~p-G~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~--~~~~~i~~~L~~ 373 (380)
T TIGR01127 303 GRKVRIETVLPDRP-GALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGK--EHLDEILKILRD 373 (380)
T ss_pred CCEEEEEEEeCCCC-CHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCH--HHHHHHHHHHHH
Confidence 45678889999999 9999999999999999988765421 1122335666666532 234455555543
No 107
>PRK06382 threonine dehydratase; Provisional
Probab=76.41 E-value=15 Score=35.34 Aligned_cols=67 Identities=12% Similarity=0.056 Sum_probs=44.3
Q ss_pred CCeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEE----EeCCeEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 181 DNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTI----PFGNYALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 181 ~~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs----~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
+..+.+.|.-++++ |.|.+|++.|.+++++|++.... ........++|.++..+. ...++|.+.|++
T Consensus 328 ~~~~rl~v~v~D~p-G~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~--~~~~~v~~~L~~ 398 (406)
T PRK06382 328 GQLVRIECNIPDRP-GNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQ--DHLDRILNALRE 398 (406)
T ss_pred CCEEEEEEEcCCCC-CHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCH--HHHHHHHHHHHH
Confidence 44577888899999 99999999999999999887654 222322334555555422 123344555443
No 108
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=75.86 E-value=21 Score=26.65 Aligned_cols=47 Identities=6% Similarity=0.110 Sum_probs=36.9
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCe-EEEEEEEE
Q 038298 184 VLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNY-ALDITVVA 231 (259)
Q Consensus 184 v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~-~l~~tI~a 231 (259)
..|.|...+++ |.|.+|+..+.--|+.|-+-++....+. .-.+||.+
T Consensus 4 ~~lsi~v~n~p-GVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v 51 (76)
T PRK11152 4 HQLTIKARFRP-EVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV 51 (76)
T ss_pred EEEEEEEECCc-cHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE
Confidence 35677888999 9999999999999999988888775443 33456655
No 109
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=73.86 E-value=24 Score=24.48 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=19.9
Q ss_pred CCCCCHHHHHHHHHHhCCCeEEEE
Q 038298 192 KQNIGFISNIVSEIEKLHLVVINS 215 (259)
Q Consensus 192 ~~~~gll~~Il~aLe~lgL~Vv~a 215 (259)
..+ |.+.+++++|.+.|+.|...
T Consensus 13 ~~~-gi~~~if~aL~~~~I~v~~~ 35 (64)
T cd04937 13 GVP-GVMAKIVGALSKEGIEILQT 35 (64)
T ss_pred CCc-CHHHHHHHHHHHCCCCEEEE
Confidence 456 99999999999999999633
No 110
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=73.43 E-value=26 Score=23.81 Aligned_cols=59 Identities=8% Similarity=0.162 Sum_probs=35.3
Q ss_pred EEEEEec---CCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHH
Q 038298 185 LIRIHCE---KQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLAL 252 (259)
Q Consensus 185 ~I~I~c~---~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al 252 (259)
+|.+.+. ..+ +.+.+++++|.+.|+.|.-.+... .+ .+++|...-.+ .+++.+.|+.+|
T Consensus 3 ~isvvg~~~~~~~-~~~~~i~~~l~~~~I~v~~i~~~~-s~--~~is~~v~~~~-----~~~~~~~lh~~~ 64 (66)
T cd04922 3 ILALVGDGMAGTP-GVAATFFSALAKANVNIRAIAQGS-SE--RNISAVIDEDD-----ATKALRAVHERF 64 (66)
T ss_pred EEEEECCCCCCCc-cHHHHHHHHHHHCCCCEEEEEecC-cc--cEEEEEEeHHH-----HHHHHHHHHHHH
Confidence 3555443 445 899999999999999996554332 22 22333333222 345566666665
No 111
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=72.26 E-value=33 Score=26.91 Aligned_cols=50 Identities=14% Similarity=0.278 Sum_probs=39.2
Q ss_pred CeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEE-EEEEEE
Q 038298 182 NNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALD-ITVVAQ 232 (259)
Q Consensus 182 ~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~-~tI~aq 232 (259)
+...|.+..++++ |.|.+|...+..-|..|-+-++...++.-++ +||.+.
T Consensus 7 ~~~tisvlv~N~p-GVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~ 57 (96)
T PRK08178 7 DNVILELTVRNHP-GVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN 57 (96)
T ss_pred CCEEEEEEEECCc-CHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc
Confidence 3466888999999 9999999999999999988887776664332 566554
No 112
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=71.49 E-value=26 Score=23.03 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=24.8
Q ss_pred EEEEEec---CCCCCHHHHHHHHHHhCCCeEEEEEEE
Q 038298 185 LIRIHCE---KQNIGFISNIVSEIEKLHLVVINSRTI 218 (259)
Q Consensus 185 ~I~I~c~---~~~~gll~~Il~aLe~lgL~Vv~asvs 218 (259)
+|.|.+. ..+ +.+.+++++|.+.++.+.....+
T Consensus 2 ~i~i~g~~~~~~~-~~~~~i~~~l~~~~i~v~~i~~~ 37 (65)
T cd04892 2 LVSVVGAGMRGTP-GVAARIFSALAEAGINIIMISQG 37 (65)
T ss_pred EEEEECCCCCCCc-cHHHHHHHHHHHCCCcEEEEEcC
Confidence 3555433 455 89999999999999999776643
No 113
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=71.39 E-value=11 Score=29.40 Aligned_cols=66 Identities=8% Similarity=0.202 Sum_probs=46.2
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHH
Q 038298 184 VLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLAL 252 (259)
Q Consensus 184 v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al 252 (259)
++|.|...+++ |....|..+|-++|+.+++.+-+...+++ ..-+.+..... ..+...|.+.|..+.
T Consensus 4 avITV~GkDr~-GIva~is~vLAe~~vNIldisQtvm~~~f-tm~~lV~~~~~-~~d~~~lr~~l~~~~ 69 (90)
T COG3830 4 AVITVIGKDRV-GIVAAVSRVLAEHGVNILDISQTVMDGFF-TMIMLVDISKE-VVDFAALRDELAAEG 69 (90)
T ss_pred EEEEEEcCCCC-chhHHHHHHHHHcCCcEEEHHHHHHhhhc-eeeeEEcCChH-hccHHHHHHHHHHHH
Confidence 67888899999 99999999999999999999877777753 23344444422 234444444444443
No 114
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.93 E-value=22 Score=24.88 Aligned_cols=51 Identities=14% Similarity=0.160 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHHH
Q 038298 192 KQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLALS 253 (259)
Q Consensus 192 ~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~ 253 (259)
..+ |.+.+++++|.+.++.++.... +-.++++...-.+ .++.++.|+.+|.
T Consensus 12 ~~~-gv~~~~~~~L~~~~i~~i~~~~-----s~~~is~vv~~~d-----~~~av~~LH~~f~ 62 (63)
T cd04920 12 SLL-HKLGPALEVFGKKPVHLVSQAA-----NDLNLTFVVDEDQ-----ADGLCARLHFQLI 62 (63)
T ss_pred cCc-cHHHHHHHHHhcCCceEEEEeC-----CCCeEEEEEeHHH-----HHHHHHHHHHHHh
Confidence 456 8999999999998877755442 2234444444432 4667778877763
No 115
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=66.78 E-value=32 Score=24.30 Aligned_cols=52 Identities=15% Similarity=0.239 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHHH
Q 038298 193 QNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLALS 253 (259)
Q Consensus 193 ~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~ 253 (259)
.+ |.+.+++++|.+.|+.|...+.+. +-.++++...-. ..++.++.|+++|.
T Consensus 14 ~~-gv~~ki~~~L~~~~I~v~~i~~~~---s~~~is~~V~~~-----~~~~av~~Lh~~f~ 65 (66)
T cd04915 14 TP-GVLARGLAALAEAGIEPIAAHQSM---RNVDVQFVVDRD-----DYDNAIKALHAALV 65 (66)
T ss_pred cc-hHHHHHHHHHHHCCCCEEEEEecC---CeeEEEEEEEHH-----HHHHHHHHHHHHHh
Confidence 46 899999999999999996655433 222333333322 25667777777663
No 116
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=66.16 E-value=42 Score=35.14 Aligned_cols=52 Identities=12% Similarity=0.156 Sum_probs=44.0
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCc
Q 038298 184 VLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVE 236 (259)
Q Consensus 184 v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~ 236 (259)
+.|.|...+++ |+|.+|+++|-+.+..|.+.+.....+....+.|..++.+-
T Consensus 628 ~~i~v~~~~r~-glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~n~ 679 (701)
T COG0317 628 VDIEIRAYDRS-GLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVKNL 679 (701)
T ss_pred EEEEEEEcccc-chHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEECcH
Confidence 56777888999 99999999999999999999988877776666777788763
No 117
>PRK08526 threonine dehydratase; Provisional
Probab=65.90 E-value=38 Score=32.83 Aligned_cols=66 Identities=9% Similarity=0.111 Sum_probs=46.2
Q ss_pred CCeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCe----EEEEEEEEEecCceecCHHHHHHHHH
Q 038298 181 DNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNY----ALDITVVAQMEVEFCLTVKELVKNLR 249 (259)
Q Consensus 181 ~~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~----~l~~tI~aq~~~~~~~t~~dl~~~L~ 249 (259)
|..+.+.+..+.++ |.|.+++..+-+.+.+|+.......... ...++|.++..+.. ..++|.+.|+
T Consensus 324 ~r~~~~~~~~~d~p-g~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~~--~~~~~~~~l~ 393 (403)
T PRK08526 324 YRKMKLHVTLVDKP-GALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGKE--HQEEIRKILT 393 (403)
T ss_pred CCEEEEEEEcCCCC-CHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCHH--HHHHHHHHHH
Confidence 45688899999999 9999999999999999998877553333 12245666666532 2344444443
No 118
>PRK11899 prephenate dehydratase; Provisional
Probab=65.54 E-value=29 Score=32.07 Aligned_cols=53 Identities=6% Similarity=-0.016 Sum_probs=43.5
Q ss_pred eEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCc
Q 038298 183 NVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVE 236 (259)
Q Consensus 183 ~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~ 236 (259)
...|-+..++++ |.|.++|..+...|+....-..-+..+..-.|.|...+++.
T Consensus 194 ktsl~~~~~~~p-GaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~ 246 (279)
T PRK11899 194 VTTFVFRVRNIP-AALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGH 246 (279)
T ss_pred eEEEEEEeCCCC-ChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECC
Confidence 344555557889 99999999999999999999988888877677778887764
No 119
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=65.33 E-value=33 Score=24.00 Aligned_cols=52 Identities=8% Similarity=0.041 Sum_probs=32.3
Q ss_pred CCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHH
Q 038298 192 KQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLAL 252 (259)
Q Consensus 192 ~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al 252 (259)
+.+ |.+.+++++|.+.|+.|.-.+..+-+ .++++...-.+ .+..++.|++.|
T Consensus 12 ~~~-~~~~~i~~aL~~~~I~v~~i~~g~s~---~sis~~v~~~~-----~~~av~~Lh~~f 63 (65)
T cd04918 12 RSS-LILERAFHVLYTKGVNVQMISQGASK---VNISLIVNDSE-----AEGCVQALHKSF 63 (65)
T ss_pred CCc-cHHHHHHHHHHHCCCCEEEEEecCcc---ceEEEEEeHHH-----HHHHHHHHHHHH
Confidence 345 89999999999999999655543322 22333333322 345566666665
No 120
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=65.24 E-value=42 Score=28.98 Aligned_cols=48 Identities=15% Similarity=0.179 Sum_probs=36.6
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCe-EEEEEEEEE
Q 038298 184 VLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNY-ALDITVVAQ 232 (259)
Q Consensus 184 v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~-~l~~tI~aq 232 (259)
-.|.|...+++ |.|.+|...|...|+.+.+.++.+..+. .-.+||.+.
T Consensus 3 ~~isvlv~n~P-GVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~ 51 (174)
T CHL00100 3 HTLSVLVEDES-GVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP 51 (174)
T ss_pred EEEEEEEeCcC-CHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE
Confidence 35778889999 9999999999999999988887653222 224566644
No 121
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=64.74 E-value=60 Score=29.30 Aligned_cols=65 Identities=8% Similarity=0.247 Sum_probs=41.6
Q ss_pred CeEEEEEEecCCCC-CHHHHHHHHHHhCCCeEEEEEEEEeCC-e--EEEEEEEEEecCceecCHHHHHHHH
Q 038298 182 NNVLIRIHCEKQNI-GFISNIVSEIEKLHLVVINSRTIPFGN-Y--ALDITVVAQMEVEFCLTVKELVKNL 248 (259)
Q Consensus 182 ~~v~I~I~c~~~~~-gll~~Il~aLe~lgL~Vv~asvs~~~~-~--~l~~tI~aq~~~~~~~t~~dl~~~L 248 (259)
..+.+.|.|..... .....+++.|++.++.+.+.++..+++ . .+++++.+.-.+ ....++++..|
T Consensus 141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~--~~~le~iv~~L 209 (225)
T PRK15385 141 KRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADY--RKTRELIISRI 209 (225)
T ss_pred eEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCc--hhhHHHHHHHH
Confidence 35678899987662 347888899999999999999876643 2 222333333322 23455555544
No 122
>PRK11898 prephenate dehydratase; Provisional
Probab=64.28 E-value=22 Score=32.80 Aligned_cols=52 Identities=10% Similarity=0.010 Sum_probs=39.4
Q ss_pred EEEEEEecCC-CCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCc
Q 038298 184 VLIRIHCEKQ-NIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVE 236 (259)
Q Consensus 184 v~I~I~c~~~-~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~ 236 (259)
..|-+..+.. + |.|.++|..|...|+.+.+-...+..++.-.|.|.+.++..
T Consensus 197 tslif~l~~~~p-GsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~ 249 (283)
T PRK11898 197 TSLVLTLPNNLP-GALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGH 249 (283)
T ss_pred EEEEEEeCCCCc-cHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEcc
Confidence 4455666554 8 99999999999999999998888876665455666666543
No 123
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=63.44 E-value=24 Score=34.89 Aligned_cols=66 Identities=6% Similarity=0.114 Sum_probs=43.7
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 184 VLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 184 v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
..|-+...+++ |.|.++|..+...|+.+.+-..-+.....-.|.|.+.+++...-.++++.+.|++
T Consensus 17 TSLiFsL~d~p-GaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~~~~v~~aL~~Lk~ 82 (436)
T TIGR01268 17 TSLIFSLKEEA-GALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEASDRKLEGVIEHLRQ 82 (436)
T ss_pred EEEEEEcCCCC-cHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCccHHHHHHHHHHHH
Confidence 44555557788 9999999999999999999887776555444555566654321223444444443
No 124
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=61.52 E-value=48 Score=34.65 Aligned_cols=70 Identities=4% Similarity=0.037 Sum_probs=48.6
Q ss_pred CCeEEEEEE-ecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHHH
Q 038298 181 DNNVLIRIH-CEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLALS 253 (259)
Q Consensus 181 ~~~v~I~I~-c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~ 253 (259)
+.+..+.|. +++++ |.++++...|--+|+.|.+|++.+ ++..+. .|.+.-..+..-....|.+.++.++.
T Consensus 544 ~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~ 614 (693)
T PRK00227 544 EEDGFFTVIWHGDYP-RELVRVLALIAAKGWNILSARMVA-NGPWSA-EFDVRANGPQDFDPQEFLQAYKSGVY 614 (693)
T ss_pred ccCCeEEEEecCCcc-cHHHHHHHHHHhcCceeeEeEEec-CCceEE-EEEEecCCCCCCChHHHHHHHHHhhc
Confidence 334455555 48889 999999999999999999999999 555442 34444344444556666666666553
No 125
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=60.52 E-value=31 Score=25.15 Aligned_cols=46 Identities=13% Similarity=0.263 Sum_probs=33.2
Q ss_pred ceEEEEeCCeEEEEEEecCCC-----CCHHHHHHHHHHhCCCeEEEEEEEE
Q 038298 174 DIVVRVSDNNVLIRIHCEKQN-----IGFISNIVSEIEKLHLVVINSRTIP 219 (259)
Q Consensus 174 ~VeV~~~~~~v~I~I~c~~~~-----~gll~~Il~aLe~lgL~Vv~asvs~ 219 (259)
.|.++..++.+.|.|.++... ..-+..+.++|...|+.+.+.++..
T Consensus 28 ~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~ 78 (85)
T PF02120_consen 28 EVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQ 78 (85)
T ss_dssp EEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEES
T ss_pred EEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEE
Confidence 455677888999999987654 1347788999999999999877654
No 126
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=59.96 E-value=2.3 Score=44.03 Aligned_cols=61 Identities=21% Similarity=0.276 Sum_probs=51.6
Q ss_pred chhhhhhHHHHHHHHHHHHhHHHHhccCCCC-----CCCCccchHHHHHHHHHHHHHHHHHHHHhh
Q 038298 94 LQAQEHVIAERKRREKMNQQFIALSAVIPGI-----KQMNKASVLEGTIKHLKELQERGKKLVEHT 154 (259)
Q Consensus 94 ~~~~~h~~~ER~RR~k~n~~~~~LrslvP~~-----~k~dK~siL~~ai~YIk~Lq~~v~~L~~~~ 154 (259)
.+...|+.+|.+||..++-.|..|.+++-+. .|+.+..-+...+.||.-++.+...+.++-
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~ 715 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEA 715 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhh
Confidence 4578899999999999999999999998764 566677779999999999998877776654
No 127
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=58.38 E-value=63 Score=30.08 Aligned_cols=53 Identities=8% Similarity=0.070 Sum_probs=43.6
Q ss_pred eEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCc
Q 038298 183 NVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVE 236 (259)
Q Consensus 183 ~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~ 236 (259)
...|-+..++++ |.|.++|..|...|++...-..-+...+.-.|.|...+++.
T Consensus 194 kTsl~f~~~n~P-GaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~ 246 (279)
T COG0077 194 KTSLIFSVPNKP-GALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGH 246 (279)
T ss_pred eEEEEEEcCCCC-chHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecC
Confidence 344555666899 99999999999999999999988888877677788887765
No 128
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=57.91 E-value=66 Score=31.14 Aligned_cols=50 Identities=8% Similarity=0.180 Sum_probs=41.8
Q ss_pred EEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCc
Q 038298 186 IRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVE 236 (259)
Q Consensus 186 I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~ 236 (259)
+-+..++++ |.|.++|..|...|+....-..-+..+....|.|...+.+.
T Consensus 300 l~~~~~~~p-GaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~ 349 (386)
T PRK10622 300 LLMATGQQA-GALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQAN 349 (386)
T ss_pred EEEEcCCCC-cHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCC
Confidence 334446889 99999999999999999999988888887778888888764
No 129
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=57.69 E-value=65 Score=22.76 Aligned_cols=40 Identities=18% Similarity=0.162 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEEEeCC-eEEEEEEEEEe
Q 038298 193 QNIGFISNIVSEIEKLHLVVINSRTIPFGN-YALDITVVAQM 233 (259)
Q Consensus 193 ~~~gll~~Il~aLe~lgL~Vv~asvs~~~~-~~l~~tI~aq~ 233 (259)
++ |.|.+|+..+.--|+.+-+-++...++ ....++|.+.-
T Consensus 2 ~~-GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~ 42 (63)
T PF13710_consen 2 QP-GVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG 42 (63)
T ss_dssp ST-THHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES
T ss_pred Cc-HHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee
Confidence 56 999999999999999998888777333 34446665554
No 130
>PRK14646 hypothetical protein; Provisional
Probab=53.99 E-value=1.1e+02 Score=25.78 Aligned_cols=54 Identities=7% Similarity=0.033 Sum_probs=35.1
Q ss_pred HHHHHHHhCCCeEEEEEEEEeCCe-EEEEEEEEEecCceecCHHHHHHHHHHHHHHHh
Q 038298 200 NIVSEIEKLHLVVINSRTIPFGNY-ALDITVVAQMEVEFCLTVKELVKNLRLALSKFI 256 (259)
Q Consensus 200 ~Il~aLe~lgL~Vv~asvs~~~~~-~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~~~ 256 (259)
-+-..++++|++++...+..-++. ++. |...-.++..++++| ...+..+|..++
T Consensus 12 li~p~~~~~G~eLvdve~~~~~~~~~Lr--V~IDk~~g~gVtldD-C~~vSr~is~~L 66 (155)
T PRK14646 12 LLEKVANEFDLKICSLNIQTNQNPIVIK--IIIKKTNGDDISLDD-CALFNTPASEEI 66 (155)
T ss_pred HHHHHHHHcCCEEEEEEEEeCCCCeEEE--EEEECCCCCCccHHH-HHHHHHHHHHHh
Confidence 344567899999999999886654 443 333333334588877 455666666554
No 131
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.90 E-value=65 Score=21.64 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=19.7
Q ss_pred CCCCCHHHHHHHHHHhCCCeEEEEE
Q 038298 192 KQNIGFISNIVSEIEKLHLVVINSR 216 (259)
Q Consensus 192 ~~~~gll~~Il~aLe~lgL~Vv~as 216 (259)
..+ +.+.+++++|.+.|+.|.-.+
T Consensus 13 ~~~-~~~~~i~~~L~~~~I~v~~i~ 36 (66)
T cd04924 13 GTP-GVAGRVFGALGKAGINVIMIS 36 (66)
T ss_pred CCc-cHHHHHHHHHHHCCCCEEEEE
Confidence 445 899999999999999985444
No 132
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=53.85 E-value=8.4 Score=32.86 Aligned_cols=42 Identities=21% Similarity=0.299 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhHHHHhccCCCCCCCCccch--HHHHHHHHHHH
Q 038298 102 AERKRREKMNQQFIALSAVIPGIKQMNKASV--LEGTIKHLKEL 143 (259)
Q Consensus 102 ~ER~RR~k~n~~~~~LrslvP~~~k~dK~si--L~~ai~YIk~L 143 (259)
.||.|-.++++.|.-|+.|+|+.....|+-+ |.-+-+||..|
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~ 72 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSL 72 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhH
Confidence 7899999999999999999997532222221 44444444444
No 133
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.13 E-value=68 Score=21.61 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=23.4
Q ss_pred EEEEEec---CCCCCHHHHHHHHHHhCCCeEEEEEE
Q 038298 185 LIRIHCE---KQNIGFISNIVSEIEKLHLVVINSRT 217 (259)
Q Consensus 185 ~I~I~c~---~~~~gll~~Il~aLe~lgL~Vv~asv 217 (259)
+|.+.+. ..+ +.+.+++.+|.+.|+.|.-.+.
T Consensus 3 lisivg~~~~~~~-~~~~~i~~~L~~~~i~v~~i~~ 37 (66)
T cd04916 3 LIMVVGEGMKNTV-GVSARATAALAKAGINIRMINQ 37 (66)
T ss_pred EEEEEcCCCCCCc-cHHHHHHHHHHHCCCCEEEEEe
Confidence 3444443 456 8999999999999999955543
No 134
>PRK14637 hypothetical protein; Provisional
Probab=52.23 E-value=99 Score=25.99 Aligned_cols=56 Identities=9% Similarity=0.070 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHhCCCeEEEEEEEEeCCe-EEEEEEEEEecCceecCHHHHHHHHHHHHHHH
Q 038298 195 IGFISNIVSEIEKLHLVVINSRTIPFGNY-ALDITVVAQMEVEFCLTVKELVKNLRLALSKF 255 (259)
Q Consensus 195 ~gll~~Il~aLe~lgL~Vv~asvs~~~~~-~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~~ 255 (259)
-|....+-.+++++|++++...+..-+.. ++.++| . ....++++| ...+..+|...
T Consensus 8 ~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~I--D--~~~gV~idd-C~~vSr~Is~~ 64 (151)
T PRK14637 8 LGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVI--Y--SAGGVGLDD-CARVHRILVPR 64 (151)
T ss_pred ccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEE--E--CCCCCCHHH-HHHHHHHHHHH
Confidence 37888888899999999999999886664 554433 2 334588777 34455554443
No 135
>PRK14633 hypothetical protein; Provisional
Probab=51.15 E-value=89 Score=26.17 Aligned_cols=52 Identities=12% Similarity=0.180 Sum_probs=34.9
Q ss_pred HHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHHHHHh
Q 038298 200 NIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLALSKFI 256 (259)
Q Consensus 200 ~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~~~ 256 (259)
.+-..++++|++++...+..-++.++.++| +....++++| ...+..+|...+
T Consensus 9 lv~p~~~~~G~eL~dve~~~~~~~~lrV~I----D~~~Gv~ldd-C~~vSr~i~~~L 60 (150)
T PRK14633 9 IVEPITADLGYILWGIEVVGSGKLTIRIFI----DHENGVSVDD-CQIVSKEISAVF 60 (150)
T ss_pred HHHHHHHHCCCEEEEEEEEeCCCcEEEEEE----eCCCCCCHHH-HHHHHHHHHHHh
Confidence 344567999999999998876665554333 3334588877 556666666554
No 136
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=49.31 E-value=1.1e+02 Score=29.56 Aligned_cols=54 Identities=2% Similarity=-0.048 Sum_probs=38.7
Q ss_pred CCeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEE-eCCeEEEEEEEEEecC
Q 038298 181 DNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIP-FGNYALDITVVAQMEV 235 (259)
Q Consensus 181 ~~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~-~~~~~l~~tI~aq~~~ 235 (259)
|..+.+++.-+.+| |-|.++++.+-..+.+|+....-. .+-..-.+.|..++.+
T Consensus 323 ~r~~~~~v~ipdrP-GaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~ 377 (409)
T TIGR02079 323 GLKHYFIVRFPQRP-GALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELND 377 (409)
T ss_pred CCEEEEEEEeCCCC-CHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCC
Confidence 56788999999999 999999997777777888776552 2222223456666665
No 137
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=48.99 E-value=5.7 Score=41.21 Aligned_cols=61 Identities=23% Similarity=0.369 Sum_probs=50.8
Q ss_pred chhhhhhHHHHHHHHHHHHhHHHHhccCCCC-----CCCCccchHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038298 94 LQAQEHVIAERKRREKMNQQFIALSAVIPGI-----KQMNKASVLEGTIKHLKELQERGKKLVEHTKRK 157 (259)
Q Consensus 94 ~~~~~h~~~ER~RR~k~n~~~~~LrslvP~~-----~k~dK~siL~~ai~YIk~Lq~~v~~L~~~~~~~ 157 (259)
-....|+.+||+||-.+.+.|..|..|.|.. .+..++|||. +.|+.+++.-+.+.+....+
T Consensus 786 ~v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~~~k 851 (856)
T KOG3582|consen 786 MVSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKIEGK 851 (856)
T ss_pred eeecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhhhhh
Confidence 3466899999999999999999999999953 5678899999 88899998888887765433
No 138
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=48.78 E-value=41 Score=27.77 Aligned_cols=40 Identities=10% Similarity=0.299 Sum_probs=34.5
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEE
Q 038298 185 LIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYAL 225 (259)
Q Consensus 185 ~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l 225 (259)
.|.|..++++ |.|..++.+|-+.|+.+-..++.-.+++-+
T Consensus 5 QISvFlENk~-GRL~~~~~~L~eagINiRA~tiAdt~dFGI 44 (142)
T COG4747 5 QISVFLENKP-GRLASVANKLKEAGINIRAFTIADTGDFGI 44 (142)
T ss_pred EEEEEecCCc-chHHHHHHHHHHcCCceEEEEeccccCcce
Confidence 4778889999 999999999999999998888877777643
No 139
>PRK14645 hypothetical protein; Provisional
Probab=47.70 E-value=1.6e+02 Score=24.76 Aligned_cols=54 Identities=17% Similarity=0.110 Sum_probs=34.3
Q ss_pred HHHHHHHhCCCeEEEEEEEEeCC-eEEEEEEEEEecCceecCHHHHHHHHHHHHHHHh
Q 038298 200 NIVSEIEKLHLVVINSRTIPFGN-YALDITVVAQMEVEFCLTVKELVKNLRLALSKFI 256 (259)
Q Consensus 200 ~Il~aLe~lgL~Vv~asvs~~~~-~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~~~ 256 (259)
.+-..++++|++++...+..-++ .++.+ ...-.++..++++| ...+.++|..++
T Consensus 14 li~~~~~~~G~elvdve~~~~~~~~ilrV--~ID~~~~~~v~ldd-C~~vSr~is~~L 68 (154)
T PRK14645 14 LAEGALEPLGYEVLEVQVQRSGGKRIVLV--RIDRKDEQPVTVED-LERASRALEAEL 68 (154)
T ss_pred HHHHHHHHcCCEEEEEEEEeCCCCeEEEE--EEECCCCCCcCHHH-HHHHHHHHHHHh
Confidence 34456689999999999887654 44443 33322234588877 445666666555
No 140
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=46.87 E-value=66 Score=32.10 Aligned_cols=50 Identities=12% Similarity=0.169 Sum_probs=36.3
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEE-EEEEEEec
Q 038298 184 VLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALD-ITVVAQME 234 (259)
Q Consensus 184 v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~-~tI~aq~~ 234 (259)
.-|-+..+..+ |.|.++|..++..|+.+.+-..-+.....-. +.|.+.++
T Consensus 32 tSLIFsL~d~p-GaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~E 82 (464)
T TIGR01270 32 LSIIFSLSNVV-GDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVE 82 (464)
T ss_pred EEEEEECCCCc-hHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEE
Confidence 44555567778 9999999999999999999887776555333 34444444
No 141
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=46.46 E-value=1.3e+02 Score=30.15 Aligned_cols=65 Identities=12% Similarity=0.061 Sum_probs=42.4
Q ss_pred CCeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 181 DNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 181 ~~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
+.++.+.|.-+.++ |.|.++++.|-. ..|+..+....+...-+++|..++.+.. ..++|.+.|++
T Consensus 323 ~re~~l~V~iPerP-Gal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~~~~~--~~~~l~~~L~~ 387 (499)
T TIGR01124 323 QREALLAVTIPEQP-GSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQLSNPQ--ERQEILARLND 387 (499)
T ss_pred CCEEEEEEEeCCCC-CHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEeCCHH--HHHHHHHHHHH
Confidence 56789999999999 999999999987 3555555443333333456666766421 24455554443
No 142
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.39 E-value=1.2e+02 Score=22.52 Aligned_cols=62 Identities=16% Similarity=0.128 Sum_probs=41.8
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 184 VLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 184 v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
.++.|.-+-++ |-|.+.++.|-. +.+|..-+..-.++..=++.+-.++.+. ..++|.+.|++
T Consensus 2 ~~~~v~iPErp-Gal~~Fl~~l~p-~~~ITeF~YR~~~~~~a~vlvGi~~~~~---~~~~l~~~l~~ 63 (81)
T cd04907 2 RLFRFEFPERP-GALKKFLNELLP-KWNITLFHYRNQGSDYGRVLVGIQVPDA---DLDELKERLDA 63 (81)
T ss_pred eEEEEEcCCCC-CHHHHHHHHhCC-CCeEeEEEEecCCCCceeEEEEEEeChH---HHHHHHHHHHH
Confidence 56788899999 999999999932 6788887776655543334455566542 45566665554
No 143
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.65 E-value=97 Score=20.96 Aligned_cols=25 Identities=4% Similarity=0.100 Sum_probs=20.5
Q ss_pred CCCCCHHHHHHHHHHhCCCeEEEEEE
Q 038298 192 KQNIGFISNIVSEIEKLHLVVINSRT 217 (259)
Q Consensus 192 ~~~~gll~~Il~aLe~lgL~Vv~asv 217 (259)
..+ |.+.+++++|.+.|++|.-.+.
T Consensus 13 ~~~-~~~~~if~~L~~~~I~v~~i~q 37 (66)
T cd04919 13 NMI-GIAGRMFTTLADHRINIEMISQ 37 (66)
T ss_pred CCc-CHHHHHHHHHHHCCCCEEEEEe
Confidence 456 8999999999999999955443
No 144
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=43.69 E-value=72 Score=27.74 Aligned_cols=66 Identities=14% Similarity=0.242 Sum_probs=43.0
Q ss_pred CCeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEE--EEEEeCC---eEEEEEEEEEecCceecCHHHHHHHHH
Q 038298 181 DNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINS--RTIPFGN---YALDITVVAQMEVEFCLTVKELVKNLR 249 (259)
Q Consensus 181 ~~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~a--svs~~~~---~~l~~tI~aq~~~~~~~t~~dl~~~L~ 249 (259)
...+.+++...+++ |++-++.+-|..+|+.+.+- ......+ ..||+.|.+.+. .++.+.+|.+.+.
T Consensus 90 ~~~v~v~v~a~Drp-gIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lP--a~~~i~~l~~~f~ 160 (176)
T COG2716 90 PAPVWVYVDANDRP-GIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLP--ANLSISALRDAFE 160 (176)
T ss_pred CceEEEEEEecCCc-cHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCC--CcCcHHHHHHHHH
Confidence 34577888899999 99999999999999998553 3332222 245544444444 4455555554443
No 145
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=43.58 E-value=26 Score=22.03 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHhHHHHhc
Q 038298 100 VIAERKRREKMNQQFIALSA 119 (259)
Q Consensus 100 ~~~ER~RR~k~n~~~~~Lrs 119 (259)
...=|+||+.++.++..||.
T Consensus 10 keqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 10 KEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34458999999999999985
No 146
>PRK14634 hypothetical protein; Provisional
Probab=43.11 E-value=1.5e+02 Score=24.89 Aligned_cols=51 Identities=4% Similarity=0.027 Sum_probs=32.7
Q ss_pred HHHHhCCCeEEEEEEEEeCCe-EEEEEEEEEecCceecCHHHHHHHHHHHHHHHh
Q 038298 203 SEIEKLHLVVINSRTIPFGNY-ALDITVVAQMEVEFCLTVKELVKNLRLALSKFI 256 (259)
Q Consensus 203 ~aLe~lgL~Vv~asvs~~~~~-~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~~~ 256 (259)
..++++|++++...+..-+.. ++. |...-.++..++++| ...+..+|..++
T Consensus 15 ~~~~~~G~elvdve~~~~~~~~~lr--V~ID~~~g~~v~ldd-C~~vSr~is~~L 66 (155)
T PRK14634 15 ATAADKGFELCGIQVLTHLQPMTLQ--VQIRRSSGSDVSLDD-CAGFSGPMGEAL 66 (155)
T ss_pred HHHHHcCCEEEEEEEEeCCCCcEEE--EEEECCCCCcccHHH-HHHHHHHHHHHh
Confidence 346799999999998876544 443 333333343488877 455666666554
No 147
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.43 E-value=1.1e+02 Score=20.92 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=28.6
Q ss_pred CCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHH
Q 038298 192 KQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLAL 252 (259)
Q Consensus 192 ~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al 252 (259)
..+ |.+.+++++|.+.++.+++- +.+-.++++...-.+ .+.+++.|+..|
T Consensus 13 ~~~-~v~~~i~~~L~~i~i~~i~~-----~~s~~~is~~V~~~~-----~~~a~~~Lh~~f 62 (64)
T cd04917 13 ETA-GVEKRIFDALEDINVRMICY-----GASNHNLCFLVKEED-----KDEVVQRLHSRL 62 (64)
T ss_pred CCc-CHHHHHHHHHHhCCeEEEEE-----ecCccEEEEEEeHHH-----HHHHHHHHHHHH
Confidence 456 89999999997655554332 223233444333322 455566666655
No 148
>PRK12483 threonine dehydratase; Reviewed
Probab=42.08 E-value=1.8e+02 Score=29.32 Aligned_cols=52 Identities=12% Similarity=0.071 Sum_probs=38.1
Q ss_pred CCeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecC
Q 038298 181 DNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEV 235 (259)
Q Consensus 181 ~~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~ 235 (259)
+..+.+.|..+.++ |-|.++++.|-+. +|+..+......+.-.+.|..+..+
T Consensus 343 ~r~~~~~v~~~d~p-G~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~ 394 (521)
T PRK12483 343 QREAIIAVTIPEQP-GSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHP 394 (521)
T ss_pred CCEEEEEEEeCCCC-CHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCC
Confidence 56788999999999 9999999999877 7766665444444344556666654
No 149
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=41.92 E-value=1.2e+02 Score=24.79 Aligned_cols=51 Identities=14% Similarity=0.032 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhCCCeEEEEE--EEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHHH
Q 038298 197 FISNIVSEIEKLHLVVINSR--TIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLALS 253 (259)
Q Consensus 197 ll~~Il~aLe~lgL~Vv~as--vs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~ 253 (259)
-+..++.+|.+.|++|+... ...-.-+++ .+|..-.+ .+.+|+++||.||.
T Consensus 69 EV~pvi~aL~~~GI~vtAlHNH~l~e~Prl~--ymH~~~~g----dp~~lA~~vr~Ald 121 (123)
T PF07485_consen 69 EVNPVISALRKNGIEVTALHNHWLFEQPRLF--YMHIWGVG----DPAKLARKVRAALD 121 (123)
T ss_pred HHHHHHHHHHHCCceEEEEecccccCCCCEE--EEEEEecC----CHHHHHHHHHHHHh
Confidence 47889999999999996654 333333444 35555443 37889999999985
No 150
>PRK08639 threonine dehydratase; Validated
Probab=41.72 E-value=1.6e+02 Score=28.42 Aligned_cols=68 Identities=4% Similarity=0.026 Sum_probs=42.1
Q ss_pred eCCeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEe-CCeEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 180 SDNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPF-GNYALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 180 ~~~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~-~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
.+..+.+++.-+.++ |-|.++++.+-..+-+|+..+.-.. +...-.+.|..+..+.. ..+++.+.|++
T Consensus 333 ~~r~~~~~v~ipdrP-GaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~~~--h~~~i~~~L~~ 401 (420)
T PRK08639 333 EGLKHYFIVNFPQRP-GALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKDAE--DYDGLIERMEA 401 (420)
T ss_pred cCCEEEEEEEeCCCC-CHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCCHH--HHHHHHHHHHH
Confidence 356788999999999 9999999966665558876654421 11121344555665421 23444444443
No 151
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=41.44 E-value=51 Score=23.26 Aligned_cols=34 Identities=12% Similarity=0.131 Sum_probs=26.6
Q ss_pred CeEEEEEEec----CCCCCHHHHHHHHHHhCCCeEEEEE
Q 038298 182 NNVLIRIHCE----KQNIGFISNIVSEIEKLHLVVINSR 216 (259)
Q Consensus 182 ~~v~I~I~c~----~~~~gll~~Il~aLe~lgL~Vv~as 216 (259)
+-..|.|.++ ..+ |.+.++..+|.+.|+.|...+
T Consensus 5 ~~~~i~v~g~g~~~~~~-Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 5 DWAKISVVGPGLRFDVP-GVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEEEECGTTTSH-HHHHHHHHHHHHTTS-ECEEE
T ss_pred CEEEEEEEccccCCCcc-cHHHHHHHHHHHCCCCEEEEE
Confidence 3456777776 356 999999999999999997766
No 152
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=40.52 E-value=1.4e+02 Score=21.41 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=21.0
Q ss_pred cCCCCCHHHHHHHHHHhCCCeEEEEE
Q 038298 191 EKQNIGFISNIVSEIEKLHLVVINSR 216 (259)
Q Consensus 191 ~~~~~gll~~Il~aLe~lgL~Vv~as 216 (259)
...+ |.+.+++++|.+.|+.|....
T Consensus 12 ~~~~-g~~~~if~~L~~~~I~v~~i~ 36 (75)
T cd04912 12 LGAH-GFLAKVFEIFAKHGLSVDLIS 36 (75)
T ss_pred CCCc-cHHHHHHHHHHHcCCeEEEEE
Confidence 3456 999999999999999996664
No 153
>PRK14632 hypothetical protein; Provisional
Probab=40.15 E-value=1.5e+02 Score=25.39 Aligned_cols=49 Identities=10% Similarity=0.034 Sum_probs=31.0
Q ss_pred HHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHHHHHh
Q 038298 203 SEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLALSKFI 256 (259)
Q Consensus 203 ~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~~~ 256 (259)
..++++|++++...+..-+..++.++| +....++++| ...+..+|..++
T Consensus 16 pv~~~~G~eLvdve~~~~~~~~lrV~I----D~~~GV~ldD-C~~vSr~is~~L 64 (172)
T PRK14632 16 PFLASLGLELWGIELSYGGRTVVRLFV----DGPEGVTIDQ-CAEVSRHVGLAL 64 (172)
T ss_pred HHHHHCCCEEEEEEEEeCCCcEEEEEE----ECCCCCCHHH-HHHHHHHHHHHh
Confidence 346799999999998753333443333 3334588877 455666665554
No 154
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.62 E-value=1.1e+02 Score=20.12 Aligned_cols=24 Identities=4% Similarity=0.129 Sum_probs=20.2
Q ss_pred CCCCCHHHHHHHHHHhCCCeEEEEE
Q 038298 192 KQNIGFISNIVSEIEKLHLVVINSR 216 (259)
Q Consensus 192 ~~~~gll~~Il~aLe~lgL~Vv~as 216 (259)
..+ +.+.+++.+|.+.++.|.-.+
T Consensus 12 ~~~-~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 12 SHP-GVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred CCc-cHHHHHHHHHHHCCCCEEEEE
Confidence 345 899999999999999996665
No 155
>PRK07431 aspartate kinase; Provisional
Probab=39.50 E-value=1.9e+02 Score=29.20 Aligned_cols=64 Identities=8% Similarity=0.045 Sum_probs=41.4
Q ss_pred EEeCCeEEEEEEec---CCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHH
Q 038298 178 RVSDNNVLIRIHCE---KQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLAL 252 (259)
Q Consensus 178 ~~~~~~v~I~I~c~---~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al 252 (259)
.+..+-..|.+... ..+ |++.+++.+|.+.|+.|..... +-+++++.+.-.+ .++.++.|+++|
T Consensus 514 ~~~~~va~VSvVG~gm~~~~-gv~~ri~~aL~~~~I~v~~i~~-----S~~~Is~vV~~~~-----~~~av~~Lh~~f 580 (587)
T PRK07431 514 EDGPAIAKVSIVGAGMPGTP-GVAARMFRALADAGINIEMIAT-----SEIRTSCVVAEDD-----GVKALQAVHQAF 580 (587)
T ss_pred EEeCCeEEEEEECCCccCCc-CHHHHHHHHHHHCCCcEEEeec-----cceEEEEEEeHHH-----HHHHHHHHHHHh
Confidence 33444455666543 567 9999999999999999976652 2233444444332 456677777766
No 156
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=38.72 E-value=2.3e+02 Score=28.22 Aligned_cols=66 Identities=21% Similarity=0.387 Sum_probs=38.2
Q ss_pred eEEEEEEecCC--CCCHHHHHHHHHHhCCCeE--EEEEEEEeCCeEEEEEEEEEecCceecCHHHH-HHHHHHHHHHHhh
Q 038298 183 NVLIRIHCEKQ--NIGFISNIVSEIEKLHLVV--INSRTIPFGNYALDITVVAQMEVEFCLTVKEL-VKNLRLALSKFIK 257 (259)
Q Consensus 183 ~v~I~I~c~~~--~~gll~~Il~aLe~lgL~V--v~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl-~~~L~~al~~~~~ 257 (259)
-.+|.|...+. ..|.|.+|+..|+++||.| +..+ -+|+ -...+.. .....|| .+.|++|...+=.
T Consensus 393 v~mldI~Str~l~q~GFLAkvFti~ek~~isVDvvaTS-------EV~i--SltL~~~-~~~sreliq~~l~~a~eeL~k 462 (559)
T KOG0456|consen 393 VTMLDIASTRMLGQHGFLAKVFTIFEKLGISVDVVATS-------EVSI--SLTLDPS-KLDSRELIQGELDQAVEELEK 462 (559)
T ss_pred EEEEEecccchhhhhhHHHHHHHHHHHhCcEEEEEEee-------eEEE--EEecChh-hhhhHHHHHhhHHHHHHHHHH
Confidence 34566766543 2389999999999999876 3322 1232 2233322 2223333 3778887666544
Q ss_pred c
Q 038298 258 L 258 (259)
Q Consensus 258 ~ 258 (259)
|
T Consensus 463 i 463 (559)
T KOG0456|consen 463 I 463 (559)
T ss_pred h
Confidence 4
No 157
>PRK09224 threonine dehydratase; Reviewed
Probab=37.52 E-value=2.5e+02 Score=28.06 Aligned_cols=66 Identities=14% Similarity=0.064 Sum_probs=41.9
Q ss_pred CCeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 181 DNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 181 ~~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
+..+.+.|.-+.++ |-|.++++.|- +..|+..+....+...-.++|..++.+... ..++|.+.|++
T Consensus 326 ~re~~l~v~iPerP-GaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~~~-~~~~i~~~L~~ 391 (504)
T PRK09224 326 QREALLAVTIPEEP-GSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRGQE-ERAEIIAQLRA 391 (504)
T ss_pred CCEEEEEEEeCCCC-CHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCChhh-HHHHHHHHHHH
Confidence 46789999999999 99999999998 566655554433333333556666654211 13455555543
No 158
>PRK14639 hypothetical protein; Provisional
Probab=37.21 E-value=2.1e+02 Score=23.59 Aligned_cols=52 Identities=10% Similarity=0.079 Sum_probs=33.3
Q ss_pred HHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHHHHHh
Q 038298 201 IVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLALSKFI 256 (259)
Q Consensus 201 Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~~~ 256 (259)
+-..++++|++++...+..-++..+ +.|.. +....++++| ...+..+|..++
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~-lrV~I--d~~~gv~idd-C~~vSr~is~~L 54 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKI-YRVYI--TKEGGVNLDD-CERLSELLSPIF 54 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcE-EEEEE--eCCCCCCHHH-HHHHHHHHHHHh
Confidence 3457889999999999887665432 23333 3334488877 445666665554
No 159
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=36.48 E-value=1.2e+02 Score=19.84 Aligned_cols=24 Identities=4% Similarity=0.130 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHHHhCCCeEEEEE
Q 038298 192 KQNIGFISNIVSEIEKLHLVVINSR 216 (259)
Q Consensus 192 ~~~~gll~~Il~aLe~lgL~Vv~as 216 (259)
..+ +.+.+++.+|.+.++.|.-.+
T Consensus 12 ~~~-~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 12 SHP-GVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred CCc-cHHHHHHHHHHHCCCcEEEEE
Confidence 445 899999999999999996665
No 160
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=36.32 E-value=2.2e+02 Score=27.07 Aligned_cols=64 Identities=16% Similarity=0.230 Sum_probs=39.4
Q ss_pred EEeCCeEEEEEEe---cCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHH
Q 038298 178 RVSDNNVLIRIHC---EKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLAL 252 (259)
Q Consensus 178 ~~~~~~v~I~I~c---~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al 252 (259)
.+..+-..|.|.. ...+ |.+.+++++|.+.|+.|.... + .+ .++++.....+ .+..++.|++.|
T Consensus 332 ~~~~~~a~IsvVG~~~~~~~-g~~a~i~~~L~~~gIni~~i~--~-s~--~~is~vv~~~d-----~~~av~~Lh~~f 398 (401)
T TIGR00656 332 EVEEGLAKVSIVGAGMVGAP-GVASEIFSALEEKNINILMIG--S-SE--TNISFLVDEKD-----AEKAVRKLHEVF 398 (401)
T ss_pred EEeCCeEEEEEECCCcccCc-cHHHHHHHHHHHCCCcEEEEE--c-CC--CEEEEEEeHHH-----HHHHHHHHHHHH
Confidence 3334445555543 3567 999999999999999998543 2 12 22344444433 455566666665
No 161
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.25 E-value=1.7e+02 Score=24.74 Aligned_cols=54 Identities=17% Similarity=0.327 Sum_probs=36.7
Q ss_pred HHHHH-HHHhCCCeEEEEEEEEeCC-eEEEEEEEEEecCceecCHHHHHHHHHHHHHHHhh
Q 038298 199 SNIVS-EIEKLHLVVINSRTIPFGN-YALDITVVAQMEVEFCLTVKELVKNLRLALSKFIK 257 (259)
Q Consensus 199 ~~Il~-aLe~lgL~Vv~asvs~~~~-~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~~~~ 257 (259)
..+++ .++.+|++++...+...+. .++.+ -++....++++| ...+.+++..++.
T Consensus 11 ~~liep~~~~lG~ELv~ve~~~~~~~~~lrI----~id~~g~v~ldd-C~~vSr~is~~LD 66 (153)
T COG0779 11 TELIEPVVESLGFELVDVEFVKEGRDSVLRI----YIDKEGGVTLDD-CADVSRAISALLD 66 (153)
T ss_pred HHHHHHhHhhcCcEEEEEEEEEcCCCcEEEE----EeCCCCCCCHHH-HHHHHHHHHHHhc
Confidence 33443 4589999999999999884 55533 344446788888 5567777666554
No 162
>PLN02551 aspartokinase
Probab=34.96 E-value=2.6e+02 Score=28.22 Aligned_cols=68 Identities=10% Similarity=0.153 Sum_probs=43.3
Q ss_pred EEEeCCeEEEEEEec--CCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHHH
Q 038298 177 VRVSDNNVLIRIHCE--KQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLALS 253 (259)
Q Consensus 177 V~~~~~~v~I~I~c~--~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~ 253 (259)
|.+..+-..|.|.+. ..+ |++.+++.+|.+.|+.|.-.+..+ +-+++++...-. ..+..++.|+++|.
T Consensus 439 V~v~~~vAiISvVG~~~~~~-gvaariF~aLa~~gInV~mIsqga---SeinIS~vV~~~-----d~~~Av~aLH~~Ff 508 (521)
T PLN02551 439 VNLLQGRSIISLIGNVQRSS-LILEKVFRVLRTNGVNVQMISQGA---SKVNISLIVNDD-----EAEQCVRALHSAFF 508 (521)
T ss_pred EEEeCCEEEEEEEccCCCCc-cHHHHHHHHHHHCCCCeEEEEecC---CCcEEEEEEeHH-----HHHHHHHHHHHHHh
Confidence 344455556666543 356 899999999999999996655322 223344444433 25667788888774
No 163
>PRK14647 hypothetical protein; Provisional
Probab=34.03 E-value=2.5e+02 Score=23.65 Aligned_cols=50 Identities=14% Similarity=0.182 Sum_probs=32.3
Q ss_pred HHHHHhCCCeEEEEEEEEeCCe-EEEEEEEEEecCceecCHHHHHHHHHHHHHHHh
Q 038298 202 VSEIEKLHLVVINSRTIPFGNY-ALDITVVAQMEVEFCLTVKELVKNLRLALSKFI 256 (259)
Q Consensus 202 l~aLe~lgL~Vv~asvs~~~~~-~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~~~ 256 (259)
-..++++|++++...+..-+.. ++.+.| +....++++| ...+..+|...+
T Consensus 15 ~~~~~~~G~~L~dv~~~~~~~~~~lrV~I----D~~~gvsldd-C~~vSr~is~~L 65 (159)
T PRK14647 15 EQVLSSLGLELVELEYKREGREMVLRLFI----DKEGGVNLDD-CAEVSRELSEIL 65 (159)
T ss_pred HHHHHHCCCEEEEEEEEecCCCeEEEEEE----eCCCCCCHHH-HHHHHHHHHHHH
Confidence 3457899999999999886654 443333 3344588777 445556665544
No 164
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=33.78 E-value=1.2e+02 Score=25.62 Aligned_cols=41 Identities=22% Similarity=0.213 Sum_probs=27.1
Q ss_pred CcchhhhhhHHHHHHHHHHHHhHHHHhccCCCCCCCCccchHH
Q 038298 92 SPLQAQEHVIAERKRREKMNQQFIALSAVIPGIKQMNKASVLE 134 (259)
Q Consensus 92 ~~~~~~~h~~~ER~RR~k~n~~~~~LrslvP~~~k~dK~siL~ 134 (259)
+-..+.+.+.-||+||.=-...|.-||.. +..+.-|..=+.
T Consensus 8 t~kErEnnk~RERrRRAIaakIfaGLR~~--Gny~Lp~~aD~N 48 (150)
T PF05687_consen 8 TWKERENNKRRERRRRAIAAKIFAGLRAH--GNYKLPKHADNN 48 (150)
T ss_pred cHhhhHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCcCCHH
Confidence 34457777889999997777778888876 333444443333
No 165
>PRK14636 hypothetical protein; Provisional
Probab=33.72 E-value=3.1e+02 Score=23.61 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=32.0
Q ss_pred HHHHhCCCeEEEEEEEEeCC-eEEEEEEEEEecCceecCHHHHHHHHHHHHHHHh
Q 038298 203 SEIEKLHLVVINSRTIPFGN-YALDITVVAQMEVEFCLTVKELVKNLRLALSKFI 256 (259)
Q Consensus 203 ~aLe~lgL~Vv~asvs~~~~-~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~~~ 256 (259)
..++++|++++...+..-+. .++.++| .-.++..++++| ...+..+|..++
T Consensus 13 p~~~~~GleLvdve~~~~~~~~~lrV~I--D~~~~ggV~lDD-C~~vSr~Is~~L 64 (176)
T PRK14636 13 PEAKALGLDLVRVAMFGGKSDPTLQIMA--ERPDTRQLVIED-CAALSRRLSDVF 64 (176)
T ss_pred HHHHHcCCEEEEEEEEcCCCCeEEEEEE--ECCCCCCcCHHH-HHHHHHHHHHHh
Confidence 34689999999999877554 4454433 322223488777 455666666554
No 166
>PRK14626 hypothetical protein; Provisional
Probab=33.61 E-value=1.3e+02 Score=24.00 Aligned_cols=51 Identities=16% Similarity=0.110 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccccCCCCCceEEEEeCCeEEEEEEe
Q 038298 133 LEGTIKHLKELQERGKKLVEHTKRKAPESVVSVKRSQQTLPDIVVRVSDNNVLIRIHC 190 (259)
Q Consensus 133 L~~ai~YIk~Lq~~v~~L~~~~~~~~~~s~~~~k~~~~~~p~VeV~~~~~~v~I~I~c 190 (259)
+.+-++-.+++|++.++++++++.+..+... .---|+|.+.|..-+++|.+
T Consensus 7 ~~~mmkqaq~mQ~km~~~qeeL~~~~v~g~s-------ggG~VkV~~nG~~ev~~i~I 57 (110)
T PRK14626 7 LAELMKQMQSIKENVEKAKEELKKEEIVVEV-------GGGMVKVVSNGLGEIKDVEI 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEEEEe-------cCcEEEEEEECCccEEEEEE
Confidence 5566777889999999999998765432110 11146677777665555554
No 167
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=33.36 E-value=2.2e+02 Score=21.81 Aligned_cols=37 Identities=3% Similarity=-0.050 Sum_probs=31.0
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeC
Q 038298 184 VLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFG 221 (259)
Q Consensus 184 v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~ 221 (259)
..+.|....++ +.|.+||+..+--|+.|..-+.++.-
T Consensus 4 yqldl~ar~~p-e~leRVLrvtrhRGF~vcamnmt~~~ 40 (86)
T COG3978 4 YQLDLSARFNP-ETLERVLRVTRHRGFRVCAMNMTAAV 40 (86)
T ss_pred EEEeeeccCCh-HHHHHHHHHhhhcCeEEEEeeccccc
Confidence 34566777888 99999999999999999888877763
No 168
>PRK08210 aspartate kinase I; Reviewed
Probab=33.22 E-value=1.9e+02 Score=27.66 Aligned_cols=37 Identities=16% Similarity=0.279 Sum_probs=28.4
Q ss_pred EEEeCCeEEEEEEec---CCCCCHHHHHHHHHHhCCCeEEE
Q 038298 177 VRVSDNNVLIRIHCE---KQNIGFISNIVSEIEKLHLVVIN 214 (259)
Q Consensus 177 V~~~~~~v~I~I~c~---~~~~gll~~Il~aLe~lgL~Vv~ 214 (259)
+.+.++-.+|.|... ..+ |.+.+++++|.+.++.|+.
T Consensus 333 v~~~~~~a~isvvG~~~~~~~-g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 333 PSVRENCAKVSIVGAGMAGVP-GVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred EEEeCCcEEEEEEcCCcCCCc-cHHHHHHHHHHhCCCCEEE
Confidence 445556666766543 567 9999999999999999975
No 169
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=32.55 E-value=1.6e+02 Score=19.82 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=20.7
Q ss_pred CCCCCHHHHHHHHHHhCCCeEEEEE
Q 038298 192 KQNIGFISNIVSEIEKLHLVVINSR 216 (259)
Q Consensus 192 ~~~~gll~~Il~aLe~lgL~Vv~as 216 (259)
..+ |.+.+|+++|++.|+.|....
T Consensus 12 ~~~-~~~~~if~~l~~~~i~v~~i~ 35 (62)
T cd04890 12 GEV-GFLRKIFEILEKHGISVDLIP 35 (62)
T ss_pred ccc-CHHHHHHHHHHHcCCeEEEEe
Confidence 456 899999999999999997764
No 170
>PLN02905 beta-amylase
Probab=32.39 E-value=63 Score=33.58 Aligned_cols=41 Identities=24% Similarity=0.339 Sum_probs=31.9
Q ss_pred cCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHhHHHHhcc
Q 038298 80 NKPGQGNRVASRSPLQAQEHVIAERKRREKMNQQFIALSAV 120 (259)
Q Consensus 80 ~k~~~~~~~~~r~~~~~~~h~~~ER~RR~k~n~~~~~Lrsl 120 (259)
-.+.++...+.|.-..+.+....||+||.--...|.-||..
T Consensus 71 ~~~~~~~~~~~~~~~ere~~~~rer~rrai~~~i~~glr~~ 111 (702)
T PLN02905 71 GTPGGGGSRRSRPLEEKERTKLRERHRRAITARILAGLRRH 111 (702)
T ss_pred CCCCCCccCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 36666767777777788889999999997777777777765
No 171
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=32.09 E-value=1.1e+02 Score=23.18 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhCCCeEEEEEEEE---------e-CC--eEE---EEEEEEEecCceecCHHHHHHHHHHHH
Q 038298 197 FISNIVSEIEKLHLVVINSRTIP---------F-GN--YAL---DITVVAQMEVEFCLTVKELVKNLRLAL 252 (259)
Q Consensus 197 ll~~Il~aLe~lgL~Vv~asvs~---------~-~~--~~l---~~tI~aq~~~~~~~t~~dl~~~L~~al 252 (259)
-|.+|-++|++.|.+|+.-.--. + |. .++ +....+-+=+...+|++|+++.|++-|
T Consensus 9 ~Ls~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~~n~mg~~d~~~~~pVInA~G~T~eEI~~~v~~rl 79 (80)
T PF03698_consen 9 GLSNVKEALREKGYEVVDLENEQDLQNVDAIVVTGQDTNMMGIQDTSTKVPVINASGLTAEEIVQEVEERL 79 (80)
T ss_pred CchHHHHHHHHCCCEEEecCCccccCCcCEEEEECCCcccccccccccCceEEecCCCCHHHHHHHHHHhh
Confidence 48899999999999998744211 0 00 011 001112222335789999999998765
No 172
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.42 E-value=2.2e+02 Score=21.10 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=23.4
Q ss_pred EEEEEe---cCCCCCHHHHHHHHHHhCCCeEEEEE
Q 038298 185 LIRIHC---EKQNIGFISNIVSEIEKLHLVVINSR 216 (259)
Q Consensus 185 ~I~I~c---~~~~~gll~~Il~aLe~lgL~Vv~as 216 (259)
+|.|.. +..+ |.+.+|+++|.+.|+.|-...
T Consensus 3 ~i~i~~~~~~~~~-g~~a~IF~~La~~~InVDmI~ 36 (78)
T cd04933 3 MLDITSTRMLGQY-GFLAKVFSIFETLGISVDVVA 36 (78)
T ss_pred EEEEEcCCCCCcc-CHHHHHHHHHHHcCCcEEEEE
Confidence 455543 3556 999999999999999886554
No 173
>PRK07431 aspartate kinase; Provisional
Probab=31.23 E-value=2.3e+02 Score=28.66 Aligned_cols=66 Identities=14% Similarity=0.171 Sum_probs=42.9
Q ss_pred EEEEeCCeEEEEEEec---CCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHH
Q 038298 176 VVRVSDNNVLIRIHCE---KQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLAL 252 (259)
Q Consensus 176 eV~~~~~~v~I~I~c~---~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al 252 (259)
++.+..+-.+|.|.+. ..+ |.+.+++.+|.+.++.|...+. .+. .++|...-. ..++.++.|+++|
T Consensus 341 ~i~~~~~~a~IsvvG~gm~~~~-gi~~ki~~aL~~~~I~i~~i~s---Se~--~Is~vv~~~-----d~~~av~~Lh~~f 409 (587)
T PRK07431 341 EVLVETNVAKLSISGAGMMGRP-GIAAKMFDTLAEAGINIRMIST---SEV--KVSCVIDAE-----DGDKALRAVCEAF 409 (587)
T ss_pred cEEEeCCeEEEEEECCCcccCc-cHHHHHHHHHHHCCCcEEEEEc---CCC--EEEEEEcHH-----HHHHHHHHHHHHh
Confidence 3555566677877654 456 9999999999999999976661 222 233333222 2456666777666
No 174
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=31.13 E-value=2.3e+02 Score=24.84 Aligned_cols=61 Identities=11% Similarity=0.105 Sum_probs=44.1
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHH
Q 038298 185 LIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLR 249 (259)
Q Consensus 185 ~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~ 249 (259)
-|.|..++++ |.|.++-..+-++|..++.+.-..-.+.-. ..|..++++. -..+.|..+|+
T Consensus 4 ~lsi~~enk~-GvL~~ltgiiae~ggNIt~~q~~~~~~g~~-~~iYmEiEgi--~d~e~l~~~lk 64 (218)
T COG1707 4 GLSIIAENKP-GVLRDLTGIIAEEGGNITYAQQFLEKDGEK-ALIYMEIEGI--DDFEKLLERLK 64 (218)
T ss_pred eeEEEeecCc-cHHHHHHHHHHhcCCceEeeehhhhccCce-EEEEEEeeCC--CCHHHHHHHhh
Confidence 3678889999 999999999999999999988655455422 3456676653 23556666554
No 175
>PRK00341 hypothetical protein; Provisional
Probab=30.90 E-value=1.8e+02 Score=22.26 Aligned_cols=52 Identities=13% Similarity=0.058 Sum_probs=35.7
Q ss_pred eEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEE---EeCCeEEEEEEEEEecCc
Q 038298 183 NVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTI---PFGNYALDITVVAQMEVE 236 (259)
Q Consensus 183 ~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs---~~~~~~l~~tI~aq~~~~ 236 (259)
++-++|.....+ ++...|++.++.+. ++-...++ .-+|+.+.+||.+.+.+.
T Consensus 17 ~~~~KViG~~~~-~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~s~ 71 (91)
T PRK00341 17 DYPIKVIGDTGV-GFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVATDE 71 (91)
T ss_pred CccEEEEEcCch-hHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEECCH
Confidence 366888888888 89999999998664 44333221 236667778888887764
No 176
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.78 E-value=71 Score=23.83 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 038298 133 LEGTIKHLKELQERGKKLVEHTKR 156 (259)
Q Consensus 133 L~~ai~YIk~Lq~~v~~L~~~~~~ 156 (259)
+..||+-|.-||-.|++|+++...
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~ 36 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNS 36 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 678999999999999999987653
No 177
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=30.76 E-value=2.8e+02 Score=27.45 Aligned_cols=67 Identities=16% Similarity=0.258 Sum_probs=43.5
Q ss_pred EEEEeCCeEEEEEEe---cCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHH
Q 038298 176 VVRVSDNNVLIRIHC---EKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLAL 252 (259)
Q Consensus 176 eV~~~~~~v~I~I~c---~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al 252 (259)
++.+..+-.+|.|.. ...+ |...+++++|.+.++.++..+.+ -+++.+ =+++. ..+..++.|+++|
T Consensus 376 ~v~~~~~~a~vsiVG~gm~~~~-gvaa~~f~aL~~~~ini~~issS-----e~~Is~--vV~~~---~~~~av~~LH~~~ 444 (447)
T COG0527 376 EVEVEEGLALVSIVGAGMRSNP-GVAARIFQALAEENINIIMISSS-----EISISF--VVDEK---DAEKAVRALHEAF 444 (447)
T ss_pred eEEeeCCeeEEEEEccccccCc-CHHHHHHHHHHhCCCcEEEEEcC-----CceEEE--EEccH---HHHHHHHHHHHHH
Confidence 355555556666643 3556 99999999999999999877621 123333 33332 2566677888776
Q ss_pred H
Q 038298 253 S 253 (259)
Q Consensus 253 ~ 253 (259)
.
T Consensus 445 ~ 445 (447)
T COG0527 445 F 445 (447)
T ss_pred h
Confidence 4
No 178
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=30.65 E-value=1.4e+02 Score=18.75 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEE
Q 038298 193 QNIGFISNIVSEIEKLHLVVINSRT 217 (259)
Q Consensus 193 ~~~gll~~Il~aLe~lgL~Vv~asv 217 (259)
.+ |.+.+++++|.+.++.+.....
T Consensus 13 ~~-~~~~~i~~~l~~~~i~i~~i~~ 36 (60)
T cd04868 13 TP-GVAAKIFSALAEAGINVDMISQ 36 (60)
T ss_pred CC-CHHHHHHHHHHHCCCcEEEEEc
Confidence 45 8999999999999999866553
No 179
>PRK14640 hypothetical protein; Provisional
Probab=30.57 E-value=3.2e+02 Score=22.80 Aligned_cols=51 Identities=12% Similarity=0.188 Sum_probs=32.7
Q ss_pred HHHHHHhCCCeEEEEEEEEeCCe-EEEEEEEEEecCceecCHHHHHHHHHHHHHHHh
Q 038298 201 IVSEIEKLHLVVINSRTIPFGNY-ALDITVVAQMEVEFCLTVKELVKNLRLALSKFI 256 (259)
Q Consensus 201 Il~aLe~lgL~Vv~asvs~~~~~-~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~~~ 256 (259)
+-..++++|++++...+..-+.. ++.+.| +....++++| ...+.++|..++
T Consensus 12 i~p~~~~~G~el~dve~~~~~~~~~lrV~I----D~~~gv~ldd-C~~vSr~is~~L 63 (152)
T PRK14640 12 LEAPVVALGFELWGIEFIRAGKHSTLRVYI----DGENGVSVEN-CAEVSHQVGAIM 63 (152)
T ss_pred HHHHHHhcCCEEEEEEEEecCCCcEEEEEE----ECCCCCCHHH-HHHHHHHHHHHh
Confidence 33456889999999998875553 443322 3334588877 455666665554
No 180
>PLN02705 beta-amylase
Probab=30.51 E-value=2.3e+02 Score=29.47 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=19.1
Q ss_pred hhhhhhHHHHHHHHHHHHhHHHHhcc
Q 038298 95 QAQEHVIAERKRREKMNQQFIALSAV 120 (259)
Q Consensus 95 ~~~~h~~~ER~RR~k~n~~~~~Lrsl 120 (259)
.+......||+||.--...|.-||..
T Consensus 84 e~e~~~~rer~rrai~~ki~aglr~~ 109 (681)
T PLN02705 84 EKERTKLRERHRRAITSRMLAGLRQY 109 (681)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 57778889999997666666666653
No 181
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=30.50 E-value=99 Score=27.82 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=26.6
Q ss_pred EEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCe
Q 038298 186 IRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNY 223 (259)
Q Consensus 186 I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~ 223 (259)
+.|.|+... |..|..+|+++|+.|.++.+.-+...
T Consensus 167 ~~~~c~p~~---~~~v~~~L~~~g~~i~~~e~~~~P~~ 201 (234)
T PF01709_consen 167 FEFICDPSD---LSAVKKALEKKGYEIESAELEYIPNN 201 (234)
T ss_dssp EEEEEEGGG---HHHHHHHHHHTT---SEEEEEEEESS
T ss_pred EEEEECHHH---HHHHHHHHHHcCCCeeEEEEEEeCCC
Confidence 888998877 99999999999999999987554444
No 182
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=30.22 E-value=1.3e+02 Score=31.86 Aligned_cols=60 Identities=7% Similarity=0.001 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHHHHHh
Q 038298 197 FISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLALSKFI 256 (259)
Q Consensus 197 ll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~~~ 256 (259)
.-.+|.++|++.|+.|.++.+....+.-+.+.+...-..+.+.+.+++...|.+++.+-|
T Consensus 466 ~e~~i~~~L~~~gi~v~~v~~~~~~~g~~~I~l~~~~~~g~~~~~k~i~~~ls~~~g~~~ 525 (764)
T TIGR02865 466 LEEKIIRALNKNGIPYEDVLAYNTEGGNIDVELTIAACGGRGECEKKIAPIISEVTGELM 525 (764)
T ss_pred HHHHHHHHHHHCCCeeEEEEEEEcCCCcEEEEEEEcCCCCccchHHHHHHHHHHHhCCce
Confidence 446799999999999999999887777666666666666677788888888888876544
No 183
>PHA02568 J baseplate assembly protein; Provisional
Probab=29.99 E-value=3.7e+02 Score=25.09 Aligned_cols=76 Identities=7% Similarity=0.111 Sum_probs=52.3
Q ss_pred CCeEEEEEEecCCC----CCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHHHHHh
Q 038298 181 DNNVLIRIHCEKQN----IGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLALSKFI 256 (259)
Q Consensus 181 ~~~v~I~I~c~~~~----~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~~~ 256 (259)
++.|.|-|...... ..++..|-.+|...++.-+...++...-..+.|.|.+.+.-...-..+++...++.+|..++
T Consensus 165 pGtV~V~il~~~~~G~ps~~Ll~~V~~~l~~e~vrPl~d~VtV~sa~~v~~~I~a~l~l~~g~~~~~v~~~a~~~l~~y~ 244 (300)
T PHA02568 165 PAEVVVTVLSREGNGTASEDLLAAVRAALNREDVRPVTDRVTVQSATIVPYQIRATLYLYPGPDSEVILAAAEARLQAYA 244 (300)
T ss_pred CCEEEEEEEcCCCCCCCCHHHHHHHHHHhcccccCCCCCEEEEECCEEEEEEEEEEEEEcCCCChHHHHHHHHHHHHHHH
Confidence 46777777543222 14778888888777888888888888887777777776654333446777777777776654
No 184
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=29.87 E-value=2e+02 Score=20.23 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHHHHHhCCCeEEEEEEE
Q 038298 192 KQNIGFISNIVSEIEKLHLVVINSRTI 218 (259)
Q Consensus 192 ~~~~gll~~Il~aLe~lgL~Vv~asvs 218 (259)
..+ +.+.+++++|.+.++.+.-.+.+
T Consensus 13 ~~~-~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 13 GVP-GIAARIFSALARAGINVILISQA 38 (80)
T ss_pred CCc-cHHHHHHHHHHHCCCcEEEEEec
Confidence 455 89999999999999999655543
No 185
>PRK00907 hypothetical protein; Provisional
Probab=29.73 E-value=1.7e+02 Score=22.63 Aligned_cols=53 Identities=6% Similarity=0.075 Sum_probs=36.5
Q ss_pred CeEEEEEEecCCCCCHHHHHHHHHHhCCCeE----EEEEEEEeCCeEEEEEEEEEecCc
Q 038298 182 NNVLIRIHCEKQNIGFISNIVSEIEKLHLVV----INSRTIPFGNYALDITVVAQMEVE 236 (259)
Q Consensus 182 ~~v~I~I~c~~~~~gll~~Il~aLe~lgL~V----v~asvs~~~~~~l~~tI~aq~~~~ 236 (259)
.++-|+|.....+ ++...|++.++.+.-+. +...-|. +|+.+.+|+...+.+.
T Consensus 16 c~fpiKVmG~a~~-~l~~~V~~vv~~h~p~~~~~~i~~r~Ss-~GkY~Svtv~i~ats~ 72 (92)
T PRK00907 16 GTFELSAMGTAER-GLETELPRLLAATGVELLQERISWKHSS-SGKYVSVRIGFRAESR 72 (92)
T ss_pred CCCeEEEEEcCch-hHHHHHHHHHHHhCCCCCcCcEEeccCC-CCEEEEEEEEEEECCH
Confidence 4577899888889 99999999998775322 2222233 6666667777766653
No 186
>cd00554 MECDP_synthase MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene, catalyzes the formation of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid biosynthesis. This pathway is present in bacteria, plants and some protozoa but is distinct from that used by mammals and Archaea. MECDP_synthase forms a homotrimer, carrying three active sites, each of which is formed in a cleft between pairs of subunits.
Probab=29.41 E-value=2.2e+02 Score=24.15 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHHHHHhh
Q 038298 196 GFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLALSKFIK 257 (259)
Q Consensus 196 gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~~~~ 257 (259)
-+|.++++.+++.|..+.|.. +||+++...-. .....+++.|.+++.
T Consensus 74 ~lL~~~~~~~~~~g~~i~niD----------~tii~e~PKi~-----p~~~~m~~~ls~~L~ 120 (153)
T cd00554 74 ILLEEALKLIREKGYEIVNID----------ITIIAERPKIS-----PYREAMRANLAELLG 120 (153)
T ss_pred HHHHHHHHHHHHcCCEEEEEE----------EEEEecCCcch-----HHHHHHHHHHHHHhC
Confidence 479999999999999999876 46777765432 234566666666654
No 187
>PLN02550 threonine dehydratase
Probab=29.15 E-value=2.6e+02 Score=28.80 Aligned_cols=64 Identities=6% Similarity=0.057 Sum_probs=40.6
Q ss_pred CeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 182 NNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 182 ~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
..+.+.|..+.++ |.|.++++.|-+. +|+..+.....-..-.++|..+..+.. ..++|.++|++
T Consensus 416 r~~~~~v~ipd~p-G~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~--~~~~i~~~l~~ 479 (591)
T PLN02550 416 QEAVLATFMPEEP-GSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGVHTEQ--ELQALKKRMES 479 (591)
T ss_pred CEEEEEEEcCCCC-CHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEeCCHH--HHHHHHHHHHH
Confidence 3577889999999 9999999999876 666555443222222345555665432 24455555544
No 188
>PRK06349 homoserine dehydrogenase; Provisional
Probab=29.02 E-value=4e+02 Score=25.90 Aligned_cols=35 Identities=9% Similarity=0.201 Sum_probs=30.4
Q ss_pred CeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEE
Q 038298 182 NNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRT 217 (259)
Q Consensus 182 ~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asv 217 (259)
..++|++...+++ |.|.+|-..|.+.++.+.+...
T Consensus 347 ~~yylRl~v~d~p-GvLa~I~~~f~~~~vsI~si~q 381 (426)
T PRK06349 347 SKYYLRLLVADKP-GVLAKIAAIFAENGISIESILQ 381 (426)
T ss_pred eeEEEEEEecCCc-chHHHHHHHHhhcCccEEEEEe
Confidence 3588999999999 9999999999999998876543
No 189
>PRK00153 hypothetical protein; Validated
Probab=28.99 E-value=1.5e+02 Score=23.07 Aligned_cols=50 Identities=16% Similarity=0.227 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccccCCCCCceEEEEeCCeEEEEEE
Q 038298 133 LEGTIKHLKELQERGKKLVEHTKRKAPESVVSVKRSQQTLPDIVVRVSDNNVLIRIH 189 (259)
Q Consensus 133 L~~ai~YIk~Lq~~v~~L~~~~~~~~~~s~~~~k~~~~~~p~VeV~~~~~~v~I~I~ 189 (259)
+.+-++-.+++|+++++++++++....+.. ..---|+|.+.|..-++.|.
T Consensus 5 ~~~m~~qaq~~q~~~~~~q~~l~~~~~~~~-------s~~G~V~V~v~G~~~v~~i~ 54 (104)
T PRK00153 5 MQNLMKQAQQMQEKMQKMQEELAQMEVEGE-------AGGGLVKVTMTGKKEVKRVK 54 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEEEE-------ECCCeEEEEEecCceEEEEE
Confidence 456677788899999999998875443210 01114667776665555543
No 190
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=28.43 E-value=1.9e+02 Score=19.46 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=20.3
Q ss_pred cCCCCCHHHHHHHHHHhCCCeEEEE
Q 038298 191 EKQNIGFISNIVSEIEKLHLVVINS 215 (259)
Q Consensus 191 ~~~~~gll~~Il~aLe~lgL~Vv~a 215 (259)
+..+ |.+.+++++|.+.|+.|.-.
T Consensus 10 ~~~~-g~~~~i~~~L~~~~I~i~~i 33 (75)
T cd04913 10 PDKP-GVAAKIFGALAEANINVDMI 33 (75)
T ss_pred CCCC-cHHHHHHHHHHHcCCeEEEE
Confidence 4566 99999999999999999543
No 191
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=28.07 E-value=1.4e+02 Score=27.23 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhhh
Q 038298 140 LKELQERGKKLVEHTK 155 (259)
Q Consensus 140 Ik~Lq~~v~~L~~~~~ 155 (259)
||+|+.||++||.++.
T Consensus 57 L~~a~~ri~eLe~ql~ 72 (247)
T PF09849_consen 57 LKQAQARIQELEAQLQ 72 (247)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6889999999999863
No 192
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=27.94 E-value=2.3e+02 Score=28.29 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHhCCCeEEEEEEEEe--CC---eEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 194 NIGFISNIVSEIEKLHLVVINSRTIPF--GN---YALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 194 ~~gll~~Il~aLe~lgL~Vv~asvs~~--~~---~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
. |.|.++|..+++.++.+.+...-+. .. ..+.++|.+++.. ..++++.+.|++
T Consensus 49 ~-g~L~~~l~~f~~~~inl~hiEsr~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~l~~ 106 (457)
T TIGR01269 49 I-SSLHRILKYIETFKLNLVHFETRPTRTLSNADVDYSCLITLEANE---INMSLLIESLRG 106 (457)
T ss_pred c-hhHHHHHHHHHHcCCcEEEeecCCccccCCCCCceEEEEEEeccH---hhHHHHHHHHHh
Confidence 5 8899999999999999988775442 22 3355666666554 346677777765
No 193
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.80 E-value=1.7e+02 Score=18.71 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=21.5
Q ss_pred cCCCCCHHHHHHHHHHhCCCeEEEEEE
Q 038298 191 EKQNIGFISNIVSEIEKLHLVVINSRT 217 (259)
Q Consensus 191 ~~~~~gll~~Il~aLe~lgL~Vv~asv 217 (259)
+..+ |.+.+++++|.+.|+.+...+.
T Consensus 9 ~~~~-~~~~~i~~~L~~~~i~i~~i~~ 34 (61)
T cd04891 9 PDKP-GVAAKIFSALAEAGINVDMIVQ 34 (61)
T ss_pred CCCC-cHHHHHHHHHHHcCCcEEEEEE
Confidence 4556 9999999999999999966554
No 194
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=27.70 E-value=4.4e+02 Score=23.46 Aligned_cols=63 Identities=5% Similarity=0.105 Sum_probs=42.0
Q ss_pred CCeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHH
Q 038298 181 DNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLR 249 (259)
Q Consensus 181 ~~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~ 249 (259)
.+...+.|.|.... +.++++.|.+.++.+.+.++....+.. .+++...+.. ..+.+++.+.|.
T Consensus 142 ~~~~~~~i~~~~~~---~~~i~~~l~~~~i~i~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~l~~~L~ 204 (215)
T PRK09977 142 NKHYHLQLTLVNGN---VVSMLDWFKQQKIKTDLVSLQENEDHE-VVAIDITLHA--TTSIEDLYRLLK 204 (215)
T ss_pred cCcEEEEEEEcccc---HHHHHHHHHHcCceEEEEEEEecCCCc-EEEEEEEECC--CCCHHHHHHHHh
Confidence 34466777786444 688999999999999998876544332 2345555553 356677766664
No 195
>PRK00084 ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed
Probab=27.42 E-value=2.3e+02 Score=24.24 Aligned_cols=47 Identities=13% Similarity=0.136 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHHHHHhh
Q 038298 196 GFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLALSKFIK 257 (259)
Q Consensus 196 gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~~~~ 257 (259)
-+|.++++.+.+.|..+.|.. +||.+|...-.+ ....+++.|.+++.
T Consensus 77 ~lL~~~~~~~~~~g~~i~niD----------~tii~e~PKi~p-----~~~~m~~~la~~L~ 123 (159)
T PRK00084 77 VLLREVARLLRAKGYRIGNVD----------ITIIAQRPKMAP-----HIEEMRANIAEDLG 123 (159)
T ss_pred HHHHHHHHHHHHcCCEEEEEE----------EEEEcCCCcchH-----HHHHHHHHHHHHhC
Confidence 479999999999999999877 456777665322 34566666666654
No 196
>PRK14623 hypothetical protein; Provisional
Probab=27.39 E-value=2.9e+02 Score=21.98 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcC
Q 038298 133 LEGTIKHLKELQERGKKLVEHTKRKA 158 (259)
Q Consensus 133 L~~ai~YIk~Lq~~v~~L~~~~~~~~ 158 (259)
+.+-.+-.+++|++.++++++++...
T Consensus 3 ~~~~mkqaqkmQ~km~~~Qeel~~~~ 28 (106)
T PRK14623 3 MMGMMGKLKEAQQKVEATKKRLDTVL 28 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccE
Confidence 45666778899999999999886543
No 197
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.15 E-value=2.5e+02 Score=20.38 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=21.0
Q ss_pred cCCCCCHHHHHHHHHHhCCCeEEEEE
Q 038298 191 EKQNIGFISNIVSEIEKLHLVVINSR 216 (259)
Q Consensus 191 ~~~~~gll~~Il~aLe~lgL~Vv~as 216 (259)
+..+ |.+.+|+++|.+.|+.|-...
T Consensus 12 ~~~~-g~~~~IF~~La~~~I~VDmI~ 36 (75)
T cd04932 12 LHAQ-GFLAKVFGILAKHNISVDLIT 36 (75)
T ss_pred CCCc-CHHHHHHHHHHHcCCcEEEEe
Confidence 4567 999999999999999886654
No 198
>PRK09034 aspartate kinase; Reviewed
Probab=26.94 E-value=3e+02 Score=26.99 Aligned_cols=68 Identities=12% Similarity=0.154 Sum_probs=42.7
Q ss_pred EEEeCCeEEEEEEe---cCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHHH
Q 038298 177 VRVSDNNVLIRIHC---EKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLALS 253 (259)
Q Consensus 177 V~~~~~~v~I~I~c---~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~ 253 (259)
+.+..+-.+|.|.. ...+ |.+.+++.+|.+.|+.|.-.+..+ .+ .+++|...-.+ .++.++.|+.+|.
T Consensus 379 I~~~~~va~VsivG~g~~~~~-gv~arif~aL~~~~InV~mIsq~~-Se--~~Is~vV~~~d-----~~~av~~LH~~f~ 449 (454)
T PRK09034 379 LEIEHDLAIIMVVGEGMRQTV-GVAAKITKALAEANINIQMINQGS-SE--ISIMFGVKNED-----AEKAVKAIYNAFF 449 (454)
T ss_pred EEEeCCEEEEEEECCCCCCCc-cHHHHHHHHHHHCCCCEEEEEecC-Cc--ceEEEEEcHHH-----HHHHHHHHHHHHh
Confidence 45556667777743 2456 899999999999999996655333 22 23333333222 4555677777764
No 199
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=26.81 E-value=2.4e+02 Score=25.32 Aligned_cols=38 Identities=21% Similarity=0.416 Sum_probs=31.4
Q ss_pred EEEEEEecCCCCCH-HHHHHHHHHhCCCeEEEEEEEEeCCe
Q 038298 184 VLIRIHCEKQNIGF-ISNIVSEIEKLHLVVINSRTIPFGNY 223 (259)
Q Consensus 184 v~I~I~c~~~~~gl-l~~Il~aLe~lgL~Vv~asvs~~~~~ 223 (259)
+.|.+||-+.. |+ +...+.+++ .|.+.+++++..+|++
T Consensus 190 i~l~~H~Hn~~-GlA~An~laAi~-aG~~~iD~s~~GlG~~ 228 (268)
T cd07940 190 VPISVHCHNDL-GLAVANSLAAVE-AGARQVECTINGIGER 228 (268)
T ss_pred eeEEEEecCCc-chHHHHHHHHHH-hCCCEEEEEeeccccc
Confidence 66888998888 54 788888886 5999999999888854
No 200
>TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. Members of this protein family are 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, the IspF protein of the deoxyxylulose (non-mevalonate) pathway of IPP biosynthesis. This protein occurs as an IspDF bifunctional fusion protein in about 20 percent of bacterial genomes.
Probab=26.68 E-value=2.4e+02 Score=23.98 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHHHHHhh
Q 038298 196 GFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLALSKFIK 257 (259)
Q Consensus 196 gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~~~~ 257 (259)
-+|.++++.+++.|..|.|.. +||.++...-.+ ....+++.|.+++.
T Consensus 74 ~lL~~~~~~~~~~g~~i~niD----------~tii~e~PKi~p-----~~~~m~~~la~~L~ 120 (155)
T TIGR00151 74 VLLRHAVALIKEKGYRIGNVD----------ITIIAQRPKLLP-----HIPAMRENIAELLG 120 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEE----------EEEEcCCCcchH-----HHHHHHHHHHHHhC
Confidence 479999999999999999877 356676654322 34456666666554
No 201
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=26.55 E-value=1e+02 Score=22.78 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 038298 133 LEGTIKHLKELQERGKKLVEHT 154 (259)
Q Consensus 133 L~~ai~YIk~Lq~~v~~L~~~~ 154 (259)
+..||+-|..||.++++|+++.
T Consensus 13 i~~aveti~~Lq~e~eeLke~n 34 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKN 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999864
No 202
>PRK14627 hypothetical protein; Provisional
Probab=26.29 E-value=3.2e+02 Score=21.33 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcC
Q 038298 134 EGTIKHLKELQERGKKLVEHTKRKA 158 (259)
Q Consensus 134 ~~ai~YIk~Lq~~v~~L~~~~~~~~ 158 (259)
.+-.+-.+.+|++.++++++++...
T Consensus 4 ~~~mkqaq~mQ~km~~~Q~el~~~~ 28 (100)
T PRK14627 4 RQLMQMAQQMQRQMQKVQEELAATI 28 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccE
Confidence 3455667888999999988886543
No 203
>PRK06291 aspartate kinase; Provisional
Probab=26.11 E-value=3.7e+02 Score=26.39 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=40.8
Q ss_pred EEEeCCeEEEEEEec---CCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHH
Q 038298 177 VRVSDNNVLIRIHCE---KQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLAL 252 (259)
Q Consensus 177 V~~~~~~v~I~I~c~---~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al 252 (259)
+.+.++-.+|.|.+. ..+ |.+.+++.+|.+.|+.|.-.+..+ +-.+++|...-.+ .+..++.|+.+|
T Consensus 392 i~~~~~~a~IsvvG~gm~~~~-gv~~rif~aL~~~~I~v~~isqgs---Se~~Is~vV~~~d-----~~~av~~Lh~~f 461 (465)
T PRK06291 392 VTFDKDVCVVAVVGAGMAGTP-GVAGRIFSALGESGINIKMISQGS---SEVNISFVVDEED-----GERAVKVLHDEF 461 (465)
T ss_pred eEEeCCEEEEEEEcCCccCCc-ChHHHHHHHHHHCCCCEEEEEecc---ccCeEEEEEeHHH-----HHHHHHHHHHHh
Confidence 444555666777654 456 999999999999999997555332 2223333333222 345555555554
No 204
>PRK14638 hypothetical protein; Provisional
Probab=26.04 E-value=3.7e+02 Score=22.44 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=31.5
Q ss_pred HHHHhCCCeEEEEEEEEeCCe-EEEEEEEEEecCceecCHHHHHHHHHHHHHHHh
Q 038298 203 SEIEKLHLVVINSRTIPFGNY-ALDITVVAQMEVEFCLTVKELVKNLRLALSKFI 256 (259)
Q Consensus 203 ~aLe~lgL~Vv~asvs~~~~~-~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~~~ 256 (259)
..++++|++++...+..-+.. ++.+.| .-+ +..++++| ...+..+|..++
T Consensus 16 ~i~~~~G~elvdve~~~~~~~~~lrV~I--D~~-~G~v~ldd-C~~vSr~is~~L 66 (150)
T PRK14638 16 RIAEEQGLEIFDVQYRRESRGWVLRIII--DNP-VGYVSVRD-CELFSREIERFL 66 (150)
T ss_pred HHHHHcCCEEEEEEEEecCCCcEEEEEE--ECC-CCCcCHHH-HHHHHHHHHHHh
Confidence 456899999999999886554 444333 222 22377777 455666665554
No 205
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=25.91 E-value=2.4e+02 Score=24.25 Aligned_cols=61 Identities=16% Similarity=0.267 Sum_probs=42.7
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCe-EEEEEEEEEecCceecCHHHHHHHHH
Q 038298 185 LIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNY-ALDITVVAQMEVEFCLTVKELVKNLR 249 (259)
Q Consensus 185 ~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~-~l~~tI~aq~~~~~~~t~~dl~~~L~ 249 (259)
.+.+...+.+ |.|.++...+-..|+.+-+..+....+. .-++||++.-+ + -.++.+.+.|.
T Consensus 6 ilsvlv~ne~-GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~-~--~~~EQi~kQL~ 67 (163)
T COG0440 6 ILSLLVENEP-GVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGD-E--QVLEQIIKQLN 67 (163)
T ss_pred EEEEEEECCC-CeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCC-c--chHHHHHHHHH
Confidence 4556677889 9999999999999999988777665543 34577777663 2 23455554443
No 206
>PRK14641 hypothetical protein; Provisional
Probab=25.82 E-value=3.4e+02 Score=23.35 Aligned_cols=47 Identities=4% Similarity=0.104 Sum_probs=31.1
Q ss_pred HhCCCeEEEEEEEEeCCe-EEEEEEEEEecCceecCHHHHHHHHHHHHHHHhh
Q 038298 206 EKLHLVVINSRTIPFGNY-ALDITVVAQMEVEFCLTVKELVKNLRLALSKFIK 257 (259)
Q Consensus 206 e~lgL~Vv~asvs~~~~~-~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~~~~ 257 (259)
+++|++++...+..-+.. ++. |... ....++++| ...+.++|..++.
T Consensus 20 ~~~G~eLvdve~~~~~~~~~lr--V~ID--~~~gv~lDd-C~~vSr~Is~~LD 67 (173)
T PRK14641 20 KGEGVYLVSMTVKGSGKGRKIE--VLLD--ADTGIRIDQ-CAFFSRRIRERLE 67 (173)
T ss_pred ccCCeEEEEEEEEeCCCCcEEE--EEEe--CCCCCCHHH-HHHHHHHHHHHhC
Confidence 489999999999886654 443 3333 334588877 5556667766554
No 207
>PLN02317 arogenate dehydratase
Probab=25.75 E-value=2.5e+02 Score=27.30 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=30.6
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCe
Q 038298 184 VLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNY 223 (259)
Q Consensus 184 v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~ 223 (259)
..|-+.-+.++ |.|.++|..|...++.+..-..-+....
T Consensus 284 TSivfsl~~~p-G~L~k~L~~Fa~~~INLtkIESRP~~~~ 322 (382)
T PLN02317 284 TSIVFSLEEGP-GVLFKALAVFALRDINLTKIESRPQRKR 322 (382)
T ss_pred EEEEEEcCCCC-chHHHHHHHHHHCCCCEEEEEeeecCCC
Confidence 33444456788 9999999999999999998887775544
No 208
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=25.62 E-value=3.6e+02 Score=21.82 Aligned_cols=50 Identities=16% Similarity=0.284 Sum_probs=28.2
Q ss_pred HHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHHHHHh
Q 038298 203 SEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLALSKFI 256 (259)
Q Consensus 203 ~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~~~ 256 (259)
..++++|++++...+..-++..+ +.|...-+ ..++++|+.+ +..+|...+
T Consensus 4 ~~~~~~g~~l~~v~~~~~~~~~~-l~V~id~~--~gv~lddc~~-~sr~i~~~L 53 (141)
T PF02576_consen 4 PLLEELGLELVDVEVVKEGGNRI-LRVFIDKD--GGVSLDDCEK-VSRAISALL 53 (141)
T ss_dssp HHH-S-SSEEEEEEEEEETTEEE-EEEEEE-S--S---HHHHHH-HHHHHGGGT
T ss_pred cchhhcCCEEEEEEEEECCCCEE-EEEEEEeC--CCCCHHHHHH-HHHHHHHHH
Confidence 45789999999999998887633 33333333 3488888554 555554443
No 209
>PRK14625 hypothetical protein; Provisional
Probab=25.53 E-value=3.2e+02 Score=21.77 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccccCCCCCceEEEEeCCeEEEEEE
Q 038298 133 LEGTIKHLKELQERGKKLVEHTKRKAPESVVSVKRSQQTLPDIVVRVSDNNVLIRIH 189 (259)
Q Consensus 133 L~~ai~YIk~Lq~~v~~L~~~~~~~~~~s~~~~k~~~~~~p~VeV~~~~~~v~I~I~ 189 (259)
+.+.++-.+.+|++.++++++++....+... .---|+|.+.|+.-+++|.
T Consensus 4 m~~mmkqaq~mQ~km~~~Q~el~~~~v~g~s-------ggG~VkV~~~G~~~v~~I~ 53 (109)
T PRK14625 4 LGGLMKQAQAMQQKLADAQARLAETTVEGTS-------GGGMVTVTLMGNGELVRVL 53 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEEEEE-------CCCeEEEEEecCceEEEEE
Confidence 4566777788999999999988654432110 0113556666655444443
No 210
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.40 E-value=2e+02 Score=21.51 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHhCCCeEEEEE
Q 038298 195 IGFISNIVSEIEKLHLVVINSR 216 (259)
Q Consensus 195 ~gll~~Il~aLe~lgL~Vv~as 216 (259)
.|.+.++|+.||+.|+.+-+.-
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~P 36 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHMP 36 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeeec
Confidence 3999999999999999987654
No 211
>PRK06635 aspartate kinase; Reviewed
Probab=25.17 E-value=3.5e+02 Score=25.70 Aligned_cols=66 Identities=14% Similarity=0.193 Sum_probs=0.0
Q ss_pred EEEEeCCeEEEEEEe---cCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHH
Q 038298 176 VVRVSDNNVLIRIHC---EKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLAL 252 (259)
Q Consensus 176 eV~~~~~~v~I~I~c---~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al 252 (259)
.+.+..+-.+|.|.+ ...+ |.+.+++++|.+.|+.|.-.+.+. .+++|...-.+ .+...+.|+.+|
T Consensus 333 ~i~~~~~ia~isvvG~~~~~~~-g~~a~i~~~La~~~Ini~~i~ss~-----~~is~vv~~~d-----~~~a~~~Lh~~f 401 (404)
T PRK06635 333 SVTYDDDIAKVSVVGVGMRSHP-GVAAKMFEALAEEGINIQMISTSE-----IKISVLIDEKY-----LELAVRALHEAF 401 (404)
T ss_pred eEEEcCCeEEEEEECCCCCCCc-hHHHHHHHHHHHCCCCEEEEEecC-----CeEEEEEcHHH-----HHHHHHHHHHHH
No 212
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=24.69 E-value=4.1e+02 Score=22.04 Aligned_cols=51 Identities=10% Similarity=0.188 Sum_probs=30.4
Q ss_pred HHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHHHHHh
Q 038298 202 VSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLALSKFI 256 (259)
Q Consensus 202 l~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~~~ 256 (259)
-..++++|++++...+..-++..+ +.|.. +....++++| ...+..+|...+
T Consensus 14 ~~~~~~~g~~l~dv~~~~~~~~~~-l~V~I--d~~~gv~idd-c~~~Sr~is~~L 64 (154)
T PRK00092 14 EPVVEALGYELVDVEYVKEGRDST-LRIYI--DKEGGIDLDD-CEEVSRQISAVL 64 (154)
T ss_pred HHHHHHCCCEEEEEEEEecCCCcE-EEEEE--ECCCCCCHHH-HHHHHHHHHHHh
Confidence 345688999999999887544432 23333 3333477766 444555555443
No 213
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=24.33 E-value=3.4e+02 Score=21.09 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcC
Q 038298 133 LEGTIKHLKELQERGKKLVEHTKRKA 158 (259)
Q Consensus 133 L~~ai~YIk~Lq~~v~~L~~~~~~~~ 158 (259)
+.+.+.-++++|+++++++++++...
T Consensus 7 ~~~m~kqaq~mQ~k~~~~q~eL~~~~ 32 (102)
T TIGR00103 7 LGELMKQAQQMQEKMKKLQEEIAQFE 32 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccE
Confidence 56677778889999999999886543
No 214
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=24.29 E-value=4.7e+02 Score=24.78 Aligned_cols=40 Identities=15% Similarity=0.281 Sum_probs=31.1
Q ss_pred EEEeCCeEEEEEE---ecCCCCCHHHHHHHHHHhCCCeEEEEEE
Q 038298 177 VRVSDNNVLIRIH---CEKQNIGFISNIVSEIEKLHLVVINSRT 217 (259)
Q Consensus 177 V~~~~~~v~I~I~---c~~~~~gll~~Il~aLe~lgL~Vv~asv 217 (259)
+...++-.+|.|. ....+ |.+.+++.+|.+.++.|...+.
T Consensus 254 I~~~~~va~vsv~g~~~~~~~-g~~~~if~~L~~~~I~i~~i~~ 296 (401)
T TIGR00656 254 IALRKNVTRVTVHGLGMLGKR-GFLARIFGALAERNINVDLISQ 296 (401)
T ss_pred EEEECCEEEEEEecCCCCCCc-cHHHHHHHHHHHcCCcEEEEEc
Confidence 4555666778887 44567 9999999999999999976543
No 215
>PRK06291 aspartate kinase; Provisional
Probab=23.74 E-value=5e+02 Score=25.47 Aligned_cols=39 Identities=23% Similarity=0.194 Sum_probs=29.6
Q ss_pred EEeCCeEEEEEEec---CCCCCHHHHHHHHHHhCCCeEEEEEE
Q 038298 178 RVSDNNVLIRIHCE---KQNIGFISNIVSEIEKLHLVVINSRT 217 (259)
Q Consensus 178 ~~~~~~v~I~I~c~---~~~~gll~~Il~aLe~lgL~Vv~asv 217 (259)
...++-.+|.|.+. ..+ |.+.+++++|.+.|+.|.-.+.
T Consensus 316 t~~~~valIsI~g~~m~~~~-g~~arvf~~L~~~gI~V~mIsq 357 (465)
T PRK06291 316 TLIKNVALINISGAGMVGVP-GTAARIFSALAEEGVNVIMISQ 357 (465)
T ss_pred EeeCCEEEEEEeCCCCCCCc-cHHHHHHHHHHHCCCcEEEEEe
Confidence 34455667888754 456 8999999999999999976543
No 216
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=23.62 E-value=4.1e+02 Score=22.00 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=27.5
Q ss_pred EEEEecCCCCCHHHHHHHHHHhCCCeE--EEEEEEEeCCeEE
Q 038298 186 IRIHCEKQNIGFISNIVSEIEKLHLVV--INSRTIPFGNYAL 225 (259)
Q Consensus 186 I~I~c~~~~~gll~~Il~aLe~lgL~V--v~asvs~~~~~~l 225 (259)
+-|..++.| |-|++|+++|-..++.+ +-|-++.- +..+
T Consensus 72 laVEmeD~P-G~l~~I~~vl~d~diNldYiYAFv~ek-~KAl 111 (142)
T COG4747 72 LAVEMEDVP-GGLSRIAEVLGDADINLDYIYAFVTEK-QKAL 111 (142)
T ss_pred EEEEecCCC-CcHHHHHHHHhhcCcCceeeeeeeecC-ceEE
Confidence 456788999 99999999998887655 55555443 4444
No 217
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.05 E-value=3e+02 Score=19.90 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=21.0
Q ss_pred cCCCCCHHHHHHHHHHhCCCeEEEEE
Q 038298 191 EKQNIGFISNIVSEIEKLHLVVINSR 216 (259)
Q Consensus 191 ~~~~~gll~~Il~aLe~lgL~Vv~as 216 (259)
+..+ |.+.+|+++|.+.|+.|-.-.
T Consensus 12 ~~~~-g~~~~IF~~La~~~I~vDmI~ 36 (75)
T cd04935 12 WQQV-GFLADVFAPFKKHGVSVDLVS 36 (75)
T ss_pred CCcc-CHHHHHHHHHHHcCCcEEEEE
Confidence 4556 999999999999999986654
No 218
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=23.03 E-value=2.5e+02 Score=25.18 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=32.0
Q ss_pred EEEEEEecCCCCCH-HHHHHHHHHhCCCeEEEEEEEEeCCe
Q 038298 184 VLIRIHCEKQNIGF-ISNIVSEIEKLHLVVINSRTIPFGNY 223 (259)
Q Consensus 184 v~I~I~c~~~~~gl-l~~Il~aLe~lgL~Vv~asvs~~~~~ 223 (259)
+.|.+||-+.. |+ +...+.+++ .|.+.+++++.-.|++
T Consensus 186 ~~l~~H~Hn~~-GlA~AN~laAi~-aGa~~vd~s~~GlG~~ 224 (263)
T cd07943 186 TPVGFHGHNNL-GLAVANSLAAVE-AGATRIDGSLAGLGAG 224 (263)
T ss_pred ceEEEEecCCc-chHHHHHHHHHH-hCCCEEEeecccccCC
Confidence 46788998888 54 788888886 6999999999998887
No 219
>PRK02047 hypothetical protein; Provisional
Probab=23.01 E-value=3.3e+02 Score=20.77 Aligned_cols=64 Identities=16% Similarity=0.231 Sum_probs=41.2
Q ss_pred CeEEEEEEecCCCCCHHHHHHHHHHhC--CCeE--EEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHHH
Q 038298 182 NNVLIRIHCEKQNIGFISNIVSEIEKL--HLVV--INSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLALS 253 (259)
Q Consensus 182 ~~v~I~I~c~~~~~gll~~Il~aLe~l--gL~V--v~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~ 253 (259)
.++.++|.....+ ++...|.+.++.+ +++. +...-|. +|+.+.+||.+.+.+... +..|.++|.
T Consensus 15 c~~~~KvIG~~~~-~~~~~v~~iv~~~~~~~~~~~i~~k~Ss-~GkY~Svtv~v~v~s~eq------~~~iY~~L~ 82 (91)
T PRK02047 15 SDFPIKVMGKAHP-EFADTIFKVVSVHDPEFDLEKIEERPSS-GGNYTGLTITVRATSREQ------LDNIYRALT 82 (91)
T ss_pred CCCeEEEEEeCcH-hHHHHHHHHHHHhCCCCccCceEEccCC-CCeEEEEEEEEEECCHHH------HHHHHHHHh
Confidence 4577888888888 7888888888766 4333 4444444 566667788777775322 345555554
No 220
>PRK14630 hypothetical protein; Provisional
Probab=22.99 E-value=4.4e+02 Score=21.83 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=29.9
Q ss_pred HHHHHHhCCCeEEEEEEEEeCC-eEEEEEEEEEecCceecCHHHHHHHHHHHHHH
Q 038298 201 IVSEIEKLHLVVINSRTIPFGN-YALDITVVAQMEVEFCLTVKELVKNLRLALSK 254 (259)
Q Consensus 201 Il~aLe~lgL~Vv~asvs~~~~-~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~ 254 (259)
+-..++++|++++...+..-++ .++. |.. +....++++| ...+..++..
T Consensus 14 i~~~~~~~G~eLvdve~~~~~~~~~lr--V~I--d~~~gV~idD-C~~vSr~i~~ 63 (143)
T PRK14630 14 IKNVTDRLGIEIIEINTFRNRNEGKIQ--IVL--YKKDSFGVDT-LCDLHKMILL 63 (143)
T ss_pred HHHHHHHcCCEEEEEEEEecCCCcEEE--EEE--ECCCCCCHHH-HHHHHHHHHH
Confidence 3345799999999999877544 4443 333 3334588777 3444444443
No 221
>PRK08841 aspartate kinase; Validated
Probab=22.79 E-value=3.6e+02 Score=26.04 Aligned_cols=63 Identities=14% Similarity=0.128 Sum_probs=40.2
Q ss_pred EeCCeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHH
Q 038298 179 VSDNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLAL 252 (259)
Q Consensus 179 ~~~~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al 252 (259)
..++-..|.+.....+ |.+.+++.+|.+.++.|+...- .+ .++++...-. ..+..++.|+..|
T Consensus 314 ~~~~~a~vsvVG~~~~-gv~~~~~~aL~~~~I~i~~i~~---s~--~~is~vv~~~-----~~~~av~~lH~~f 376 (392)
T PRK08841 314 NSESVSLLTLVGLEAN-GMVEHACNLLAQNGIDVRQCST---EP--QSSMLVLDPA-----NVDRAANILHKTY 376 (392)
T ss_pred EeCCEEEEEEECCCCh-HHHHHHHHHHHhCCCCEEEEEC---CC--cEEEEEEeHH-----HHHHHHHHHHHHH
Confidence 3344556666666667 9999999999999999966553 22 3333433332 2455566666665
No 222
>PRK14621 hypothetical protein; Provisional
Probab=22.23 E-value=3.8e+02 Score=21.41 Aligned_cols=26 Identities=12% Similarity=0.277 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcC
Q 038298 133 LEGTIKHLKELQERGKKLVEHTKRKA 158 (259)
Q Consensus 133 L~~ai~YIk~Lq~~v~~L~~~~~~~~ 158 (259)
+.+.++-.+++|++.++++++++...
T Consensus 6 m~~mmkqaq~mQ~km~~~Q~eL~~~~ 31 (111)
T PRK14621 6 LGDMMKQIQQAGEKMQDVQKQLEKLV 31 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccE
Confidence 45667777888889988888886443
No 223
>PRK14624 hypothetical protein; Provisional
Probab=21.96 E-value=4.1e+02 Score=21.39 Aligned_cols=26 Identities=4% Similarity=0.220 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcC
Q 038298 133 LEGTIKHLKELQERGKKLVEHTKRKA 158 (259)
Q Consensus 133 L~~ai~YIk~Lq~~v~~L~~~~~~~~ 158 (259)
+.+..+-.+++|++.+++++++++..
T Consensus 8 m~~~mkqAq~mQ~km~~~QeeL~~~~ 33 (115)
T PRK14624 8 MSEALSNMGNIREKMEEVKKRIASIR 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccE
Confidence 66777778888999999988886544
No 224
>PRK14622 hypothetical protein; Provisional
Probab=21.52 E-value=4e+02 Score=20.87 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcC
Q 038298 133 LEGTIKHLKELQERGKKLVEHTKRKA 158 (259)
Q Consensus 133 L~~ai~YIk~Lq~~v~~L~~~~~~~~ 158 (259)
+.+-.+-.+++|++.++++++++...
T Consensus 3 ~~~lmkqaq~mQ~~m~~~q~el~~~~ 28 (103)
T PRK14622 3 IQYLMRQAKKLEKAMADAKEKLAEIA 28 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccE
Confidence 34556667888888888888876543
No 225
>PRK02001 hypothetical protein; Validated
Probab=21.45 E-value=3.8e+02 Score=22.53 Aligned_cols=47 Identities=11% Similarity=0.212 Sum_probs=30.5
Q ss_pred HHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHHHHHhh
Q 038298 204 EIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLALSKFIK 257 (259)
Q Consensus 204 aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~~~~ 257 (259)
.++++|++++...+.. +..+.+.| +....++++| ...+..+|..++.
T Consensus 14 ~~~~~g~eLvdv~~~~--~~~lrV~I----D~~~Gv~ldd-C~~vSr~is~~LD 60 (152)
T PRK02001 14 LLEGPELFLVDLTISP--DNKIVVEI----DGDEGVWIED-CVELSRAIEHNLD 60 (152)
T ss_pred hhhhcCcEEEEEEEEc--CCEEEEEE----ECCCCCCHHH-HHHHHHHHHHHhc
Confidence 4578999999999874 33344333 3344588877 5566777766553
No 226
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=20.81 E-value=1.5e+02 Score=22.49 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 038298 133 LEGTIKHLKELQERGKKLVEHTK 155 (259)
Q Consensus 133 L~~ai~YIk~Lq~~v~~L~~~~~ 155 (259)
+..||+-|.-||-+|++|+++..
T Consensus 13 IqqAvdtI~LLqmEieELKekn~ 35 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNN 35 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999998754
No 227
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=20.69 E-value=1.6e+02 Score=30.90 Aligned_cols=39 Identities=8% Similarity=0.159 Sum_probs=35.0
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEE
Q 038298 184 VLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDI 227 (259)
Q Consensus 184 v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~ 227 (259)
.+++|-...++ |+|..|+.+|. +|.-+.++++|..++..
T Consensus 632 ~~~e~r~~dr~-g~l~~~~~~l~----~~~~~~~~~~g~~~~~~ 670 (693)
T PRK00227 632 NILEVRTEDRR-GALGALLGVLP----DLLWITASTPGATMIVQ 670 (693)
T ss_pred cEEEEEeCccc-cHHHHHHHHhh----hhhhHhhcCCCcceEEE
Confidence 56788899999 99999999999 89999999999988753
No 228
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=20.62 E-value=4.1e+02 Score=30.66 Aligned_cols=32 Identities=13% Similarity=0.234 Sum_probs=28.6
Q ss_pred CeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEE
Q 038298 182 NNVLIRIHCEKQNIGFISNIVSEIEKLHLVVIN 214 (259)
Q Consensus 182 ~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~ 214 (259)
....|.|.|++.| +++-.|..+|..+|+.|..
T Consensus 16 ~~TvI~IV~dDmP-FLVDSV~~~L~r~gl~I~~ 47 (1528)
T PF05088_consen 16 DHTVIEIVTDDMP-FLVDSVRMELNRQGLTIHL 47 (1528)
T ss_pred CCeEEEEEcCCCC-cHHHHHHHHHHhCCCceEE
Confidence 3577999999999 9999999999999999843
No 229
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=20.04 E-value=3.2e+02 Score=19.16 Aligned_cols=45 Identities=13% Similarity=0.171 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHhHHHHhccCCCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q 038298 100 VIAERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKELQERGKKLV 151 (259)
Q Consensus 100 ~~~ER~RR~k~n~~~~~LrslvP~~~k~dK~siL~~ai~YIk~Lq~~v~~L~ 151 (259)
+..=|.-|=.+...+..+..++- ..=.++|.+||+++-..++.+.
T Consensus 13 ~~~lR~~RHD~~NhLqvI~gllq-------lg~~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 13 IDSLRAQRHDFLNHLQVIYGLLQ-------LGKYEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------TT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 33446667778888888888842 2236889999999999888763
Done!