Query 038298
Match_columns 259
No_of_seqs 241 out of 1180
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 16:25:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038298.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038298hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 1.6E-16 5.6E-21 119.7 6.7 62 95-156 6-68 (82)
2 1hlo_A Protein (transcription 99.6 4.1E-15 1.4E-19 111.3 6.4 64 93-156 10-75 (80)
3 1nkp_B MAX protein, MYC proto- 99.6 6.5E-15 2.2E-19 110.8 7.1 62 95-156 2-65 (83)
4 1an4_A Protein (upstream stimu 99.6 1.1E-15 3.8E-20 110.0 2.7 54 94-147 4-63 (65)
5 4h10_B Circadian locomoter out 99.5 8.6E-15 2.9E-19 107.4 6.2 59 93-151 6-65 (71)
6 1nkp_A C-MYC, MYC proto-oncoge 99.5 1.3E-14 4.4E-19 110.7 7.0 61 95-155 6-69 (88)
7 4ati_A MITF, microphthalmia-as 99.5 1.6E-14 5.6E-19 115.7 6.9 61 94-154 26-90 (118)
8 1a0a_A BHLH, protein (phosphat 99.5 1.7E-15 5.9E-20 108.7 0.6 53 96-148 3-62 (63)
9 1nlw_A MAD protein, MAX dimeri 99.5 5.7E-14 2E-18 105.3 7.7 61 96-156 2-65 (80)
10 4h10_A ARYL hydrocarbon recept 99.4 2.3E-14 7.9E-19 105.7 2.9 53 93-145 7-63 (73)
11 3u5v_A Protein MAX, transcript 99.4 1.4E-13 4.7E-18 102.3 3.0 58 95-152 5-66 (76)
12 2ql2_B Neurod1, neurogenic dif 99.2 3E-11 1E-15 85.8 5.7 54 95-148 2-58 (60)
13 1mdy_A Protein (MYOD BHLH doma 99.1 3.3E-11 1.1E-15 87.6 5.1 55 93-147 10-66 (68)
14 4f3l_A Mclock, circadian locom 98.9 6.6E-10 2.3E-14 102.8 5.1 54 93-146 10-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.8 2.5E-09 8.4E-14 100.2 5.1 55 92-146 10-68 (387)
16 2lfh_A DNA-binding protein inh 98.6 6.3E-09 2.2E-13 75.2 0.9 45 101-145 20-67 (68)
17 4ath_A MITF, microphthalmia-as 98.4 3.2E-07 1.1E-11 68.7 5.7 48 107-154 4-55 (83)
18 4aya_A DNA-binding protein inh 98.1 4.6E-06 1.6E-10 64.3 5.5 48 102-149 32-82 (97)
19 1zpv_A ACT domain protein; str 97.2 0.0092 3.1E-07 43.5 12.0 67 183-253 5-71 (91)
20 1u8s_A Glycine cleavage system 96.4 0.026 8.8E-07 47.1 10.7 65 183-252 6-70 (192)
21 2ko1_A CTR148A, GTP pyrophosph 96.3 0.023 7.8E-07 40.8 8.4 51 183-235 5-55 (88)
22 2nyi_A Unknown protein; protei 96.1 0.037 1.3E-06 46.6 10.2 67 183-254 5-71 (195)
23 2nyi_A Unknown protein; protei 95.5 0.092 3.2E-06 44.1 9.9 68 182-253 92-164 (195)
24 1u8s_A Glycine cleavage system 95.2 0.14 4.7E-06 42.6 10.0 70 182-254 92-168 (192)
25 3p96_A Phosphoserine phosphata 92.4 0.61 2.1E-05 42.9 9.5 66 182-250 11-76 (415)
26 3o1l_A Formyltetrahydrofolate 91.3 2 6.8E-05 38.9 11.4 66 182-250 21-88 (302)
27 3obi_A Formyltetrahydrofolate 91.1 1.7 5.8E-05 38.9 10.8 67 181-250 4-72 (288)
28 3n0v_A Formyltetrahydrofolate 91.1 1.2 4.2E-05 39.9 9.8 64 183-250 8-73 (286)
29 2jhe_A Transcription regulator 90.7 0.65 2.2E-05 36.8 6.9 35 185-220 2-36 (190)
30 2f1f_A Acetolactate synthase i 90.7 1.3 4.5E-05 36.6 8.9 48 184-232 4-52 (164)
31 3lou_A Formyltetrahydrofolate 90.0 1.9 6.4E-05 38.8 10.0 67 182-250 9-78 (292)
32 1y7p_A Hypothetical protein AF 89.5 1.2 4E-05 38.9 7.8 62 183-250 4-69 (223)
33 2pc6_A Probable acetolactate s 88.9 1.7 5.7E-05 36.0 8.2 48 184-232 5-53 (165)
34 2fgc_A Acetolactate synthase, 85.7 3.7 0.00013 34.9 8.6 49 184-233 30-79 (193)
35 3nrb_A Formyltetrahydrofolate 85.5 3.7 0.00013 36.7 9.0 36 182-218 6-41 (287)
36 2f06_A Conserved hypothetical 69.5 24 0.00083 27.1 8.4 56 186-250 75-130 (144)
37 2qmx_A Prephenate dehydratase; 63.7 21 0.00073 31.7 7.7 52 184-236 201-252 (283)
38 2re1_A Aspartokinase, alpha an 62.6 31 0.001 27.6 7.9 39 177-216 97-138 (167)
39 2dt9_A Aspartokinase; protein- 60.7 32 0.0011 27.4 7.7 65 177-252 89-156 (167)
40 3luy_A Probable chorismate mut 59.1 83 0.0028 28.5 10.9 44 192-236 217-260 (329)
41 2lqj_A Mg2+ transport protein; 56.1 24 0.00083 26.1 5.7 63 184-248 9-74 (94)
42 2f06_A Conserved hypothetical 55.8 42 0.0015 25.7 7.4 37 185-222 8-44 (144)
43 3s1t_A Aspartokinase; ACT doma 51.7 47 0.0016 27.1 7.3 65 177-252 90-157 (181)
44 3mwb_A Prephenate dehydratase; 51.4 31 0.0011 31.2 6.6 51 184-235 202-253 (313)
45 2qmw_A PDT, prephenate dehydra 51.2 38 0.0013 29.9 7.0 51 183-234 186-239 (267)
46 2dtj_A Aspartokinase; protein- 50.9 50 0.0017 26.7 7.3 65 177-252 89-156 (178)
47 4go7_X Aspartokinase; transfer 50.9 43 0.0015 28.1 7.1 57 177-234 29-88 (200)
48 2re1_A Aspartokinase, alpha an 50.7 38 0.0013 27.0 6.5 39 177-216 19-58 (167)
49 2wt7_A Proto-oncogene protein 42.2 47 0.0016 22.6 4.9 39 103-154 1-39 (63)
50 2er8_A Regulatory protein Leu3 37.8 24 0.00081 24.0 2.9 20 138-157 49-68 (72)
51 2dtj_A Aspartokinase; protein- 36.1 1.4E+02 0.0049 23.8 7.9 37 177-214 9-46 (178)
52 1rwu_A Hypothetical UPF0250 pr 35.9 1.2E+02 0.0042 23.0 6.9 52 181-235 34-88 (109)
53 3he4_B Synzip5; heterodimeric 35.6 48 0.0016 20.9 3.7 22 133-154 5-26 (46)
54 2dt9_A Aspartokinase; protein- 35.4 1.6E+02 0.0055 23.1 8.3 39 177-216 10-49 (167)
55 1zme_C Proline utilization tra 34.3 28 0.00096 23.4 2.8 19 138-156 44-62 (70)
56 1pd7_B MAD1; PAH2, SIN3, eukar 34.3 47 0.0016 19.1 3.2 20 127-146 2-21 (26)
57 3c1m_A Probable aspartokinase; 33.1 93 0.0032 29.2 7.1 69 176-253 397-468 (473)
58 3ab4_A Aspartokinase; aspartat 32.3 1.4E+02 0.0047 27.5 8.0 65 177-252 338-405 (421)
59 2rrl_A FLIK, flagellar HOOK-le 31.1 92 0.0032 25.6 5.9 77 137-219 68-152 (169)
60 2l5g_A GPS2 protein, G protein 30.6 59 0.002 20.3 3.4 30 127-156 4-33 (38)
61 1xkm_B Distinctin chain B; por 29.5 49 0.0017 18.6 2.6 19 131-149 4-22 (26)
62 1phz_A Protein (phenylalanine 28.2 50 0.0017 31.2 4.2 51 183-234 34-84 (429)
63 3m05_A Uncharacterized protein 27.1 1.8E+02 0.0062 22.2 6.6 54 193-252 14-69 (114)
64 2jee_A YIIU; FTSZ, septum, coi 26.5 67 0.0023 23.4 3.7 23 133-155 15-37 (81)
65 3ab4_A Aspartokinase; aspartat 26.3 3.7E+02 0.013 24.5 9.8 39 177-216 258-297 (421)
66 3tvi_A Aspartokinase; structur 25.6 2.3E+02 0.0078 26.5 8.3 68 177-253 368-438 (446)
67 1dh3_A Transcription factor CR 25.6 51 0.0018 21.9 2.8 18 138-155 22-39 (55)
68 1hwt_C Protein (heme activator 24.9 36 0.0012 23.5 2.0 20 137-156 57-76 (81)
69 1gd2_E Transcription factor PA 24.4 56 0.0019 23.1 2.9 16 138-153 29-44 (70)
70 2dnr_A Synaptojanin-1; RRM dom 24.3 1.6E+02 0.0056 21.6 5.6 42 181-225 7-53 (91)
71 3fx7_A Putative uncharacterize 23.7 1.3E+02 0.0043 22.5 4.9 22 133-154 65-86 (94)
72 1pyi_A Protein (pyrimidine pat 23.4 67 0.0023 22.8 3.3 22 137-158 47-68 (96)
73 1ybx_A Conserved hypothetical 23.0 1.2E+02 0.004 24.3 4.9 52 133-191 43-94 (143)
74 2zzt_A Putative uncharacterize 21.3 2.4E+02 0.0082 20.5 7.0 58 197-255 11-71 (107)
75 3byp_A CZRB protein; membrane 21.1 2.2E+02 0.0074 19.8 8.6 58 197-255 11-73 (94)
76 3mgj_A Uncharacterized protein 20.5 3E+02 0.01 21.3 7.9 28 196-223 16-45 (118)
77 1ib8_A Conserved protein SP14. 20.4 2.8E+02 0.0097 22.2 6.9 48 205-257 22-69 (164)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.65 E-value=1.6e-16 Score=119.66 Aligned_cols=62 Identities=26% Similarity=0.435 Sum_probs=58.4
Q ss_pred hhhhhhHHHHHHHHHHHHhHHHHhccCCCC-CCCCccchHHHHHHHHHHHHHHHHHHHHhhhh
Q 038298 95 QAQEHVIAERKRREKMNQQFIALSAVIPGI-KQMNKASVLEGTIKHLKELQERGKKLVEHTKR 156 (259)
Q Consensus 95 ~~~~h~~~ER~RR~k~n~~~~~LrslvP~~-~k~dK~siL~~ai~YIk~Lq~~v~~L~~~~~~ 156 (259)
.+..|+.+||+||++||+.|..|+++||+. .|++|++||.+||+||++||.+++.|+++.+.
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~ 68 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLS 68 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577999999999999999999999999986 89999999999999999999999999987653
No 2
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.56 E-value=4.1e-15 Score=111.32 Aligned_cols=64 Identities=17% Similarity=0.389 Sum_probs=59.1
Q ss_pred cchhhhhhHHHHHHHHHHHHhHHHHhccCCCC--CCCCccchHHHHHHHHHHHHHHHHHHHHhhhh
Q 038298 93 PLQAQEHVIAERKRREKMNQQFIALSAVIPGI--KQMNKASVLEGTIKHLKELQERGKKLVEHTKR 156 (259)
Q Consensus 93 ~~~~~~h~~~ER~RR~k~n~~~~~LrslvP~~--~k~dK~siL~~ai~YIk~Lq~~v~~L~~~~~~ 156 (259)
...+..|+..||+||..||+.|..|+++||.. .|++|++||..||+||+.|++++++|+++.+.
T Consensus 10 ~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~ 75 (80)
T 1hlo_A 10 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDD 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588999999999999999999999999975 69999999999999999999999999998754
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.55 E-value=6.5e-15 Score=110.84 Aligned_cols=62 Identities=18% Similarity=0.382 Sum_probs=57.1
Q ss_pred hhhhhhHHHHHHHHHHHHhHHHHhccCCC--CCCCCccchHHHHHHHHHHHHHHHHHHHHhhhh
Q 038298 95 QAQEHVIAERKRREKMNQQFIALSAVIPG--IKQMNKASVLEGTIKHLKELQERGKKLVEHTKR 156 (259)
Q Consensus 95 ~~~~h~~~ER~RR~k~n~~~~~LrslvP~--~~k~dK~siL~~ai~YIk~Lq~~v~~L~~~~~~ 156 (259)
.+..|+..||+||..||+.|..|+++||. ..|++|++||.+||+||+.|+.+++.|+.+++.
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~ 65 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDD 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999997 489999999999999999999999999887653
No 4
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.55 E-value=1.1e-15 Score=110.01 Aligned_cols=54 Identities=28% Similarity=0.473 Sum_probs=49.5
Q ss_pred chhhhhhHHHHHHHHHHHHhHHHHhccCCCCC------CCCccchHHHHHHHHHHHHHHH
Q 038298 94 LQAQEHVIAERKRREKMNQQFIALSAVIPGIK------QMNKASVLEGTIKHLKELQERG 147 (259)
Q Consensus 94 ~~~~~h~~~ER~RR~k~n~~~~~LrslvP~~~------k~dK~siL~~ai~YIk~Lq~~v 147 (259)
..+..|+.+||+||++||+.|..|++|||... |++|++||.+||+||++||++.
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 34679999999999999999999999999864 7899999999999999999865
No 5
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.53 E-value=8.6e-15 Score=107.38 Aligned_cols=59 Identities=27% Similarity=0.436 Sum_probs=53.5
Q ss_pred cchhhhhhHHHHHHHHHHHHhHHHHhccCCCC-CCCCccchHHHHHHHHHHHHHHHHHHH
Q 038298 93 PLQAQEHVIAERKRREKMNQQFIALSAVIPGI-KQMNKASVLEGTIKHLKELQERGKKLV 151 (259)
Q Consensus 93 ~~~~~~h~~~ER~RR~k~n~~~~~LrslvP~~-~k~dK~siL~~ai~YIk~Lq~~v~~L~ 151 (259)
...+.+|+.+||+||++||+.|..|++|||.. .|+||++||.+||+||+.||.++.=|+
T Consensus 6 ~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 6 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34688999999999999999999999999974 699999999999999999999886553
No 6
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.53 E-value=1.3e-14 Score=110.69 Aligned_cols=61 Identities=25% Similarity=0.473 Sum_probs=56.0
Q ss_pred hhhhhhHHHHHHHHHHHHhHHHHhccCCCC---CCCCccchHHHHHHHHHHHHHHHHHHHHhhh
Q 038298 95 QAQEHVIAERKRREKMNQQFIALSAVIPGI---KQMNKASVLEGTIKHLKELQERGKKLVEHTK 155 (259)
Q Consensus 95 ~~~~h~~~ER~RR~k~n~~~~~LrslvP~~---~k~dK~siL~~ai~YIk~Lq~~v~~L~~~~~ 155 (259)
.+..|+..||+||.+||+.|..|+.+||.. .|++|++||.+||+||++|+.+.+.|..+++
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~ 69 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEED 69 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577999999999999999999999999975 6999999999999999999999998876543
No 7
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.51 E-value=1.6e-14 Score=115.72 Aligned_cols=61 Identities=23% Similarity=0.452 Sum_probs=52.6
Q ss_pred chhhhhhHHHHHHHHHHHHhHHHHhccCCCC----CCCCccchHHHHHHHHHHHHHHHHHHHHhh
Q 038298 94 LQAQEHVIAERKRREKMNQQFIALSAVIPGI----KQMNKASVLEGTIKHLKELQERGKKLVEHT 154 (259)
Q Consensus 94 ~~~~~h~~~ER~RR~k~n~~~~~LrslvP~~----~k~dK~siL~~ai~YIk~Lq~~v~~L~~~~ 154 (259)
..+..|+.+||+||++||+.|..|++|||.+ .|++|++||.+||+||++||.+++.|++..
T Consensus 26 ~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~ 90 (118)
T 4ati_A 26 QKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 90 (118)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577999999999999999999999999976 377899999999999999999999998754
No 8
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.51 E-value=1.7e-15 Score=108.73 Aligned_cols=53 Identities=26% Similarity=0.465 Sum_probs=48.1
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHhccCCCC-------CCCCccchHHHHHHHHHHHHHHHH
Q 038298 96 AQEHVIAERKRREKMNQQFIALSAVIPGI-------KQMNKASVLEGTIKHLKELQERGK 148 (259)
Q Consensus 96 ~~~h~~~ER~RR~k~n~~~~~LrslvP~~-------~k~dK~siL~~ai~YIk~Lq~~v~ 148 (259)
+.+|+.+||+||++||..|..|++|||.. .+.+||+||+.||+||++||++++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 56999999999999999999999999954 567799999999999999998753
No 9
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.49 E-value=5.7e-14 Score=105.33 Aligned_cols=61 Identities=21% Similarity=0.336 Sum_probs=55.9
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHhccCCCC---CCCCccchHHHHHHHHHHHHHHHHHHHHhhhh
Q 038298 96 AQEHVIAERKRREKMNQQFIALSAVIPGI---KQMNKASVLEGTIKHLKELQERGKKLVEHTKR 156 (259)
Q Consensus 96 ~~~h~~~ER~RR~k~n~~~~~LrslvP~~---~k~dK~siL~~ai~YIk~Lq~~v~~L~~~~~~ 156 (259)
+..|+..||+||..||..|..|+++||.. .|.+|++||.+|++||+.|+++.+.|+.+++.
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~ 65 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQ 65 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999964 68889999999999999999999999887653
No 10
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.45 E-value=2.3e-14 Score=105.71 Aligned_cols=53 Identities=28% Similarity=0.517 Sum_probs=48.9
Q ss_pred cchhhhhhHHHHHHHHHHHHhHHHHhccCCCC----CCCCccchHHHHHHHHHHHHH
Q 038298 93 PLQAQEHVIAERKRREKMNQQFIALSAVIPGI----KQMNKASVLEGTIKHLKELQE 145 (259)
Q Consensus 93 ~~~~~~h~~~ER~RR~k~n~~~~~LrslvP~~----~k~dK~siL~~ai~YIk~Lq~ 145 (259)
...+..|+.+||+||++||+.|..|++|||.+ .|+||++||..||+||+.|+.
T Consensus 7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 44688999999999999999999999999964 799999999999999999974
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.38 E-value=1.4e-13 Score=102.31 Aligned_cols=58 Identities=21% Similarity=0.294 Sum_probs=48.6
Q ss_pred hhhhhhHHHHHHHHHHHHhHHHHhccCCC---CCCC-CccchHHHHHHHHHHHHHHHHHHHH
Q 038298 95 QAQEHVIAERKRREKMNQQFIALSAVIPG---IKQM-NKASVLEGTIKHLKELQERGKKLVE 152 (259)
Q Consensus 95 ~~~~h~~~ER~RR~k~n~~~~~LrslvP~---~~k~-dK~siL~~ai~YIk~Lq~~v~~L~~ 152 (259)
.+..|+..||+||..||+.|..|+.+||. ..|. .|++||..||+||+.||+++++++.
T Consensus 5 rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 5 KRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999995 3454 6888999999999999999998653
No 12
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.17 E-value=3e-11 Score=85.76 Aligned_cols=54 Identities=20% Similarity=0.226 Sum_probs=49.2
Q ss_pred hhhhhhHHHHHHHHHHHHhHHHHhccCCCC---CCCCccchHHHHHHHHHHHHHHHH
Q 038298 95 QAQEHVIAERKRREKMNQQFIALSAVIPGI---KQMNKASVLEGTIKHLKELQERGK 148 (259)
Q Consensus 95 ~~~~h~~~ER~RR~k~n~~~~~LrslvP~~---~k~dK~siL~~ai~YIk~Lq~~v~ 148 (259)
++..|+..||+|+..||+.|..||.+||.. .|.+|..+|..||+||..|++.++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999974 588999999999999999998763
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.15 E-value=3.3e-11 Score=87.60 Aligned_cols=55 Identities=22% Similarity=0.323 Sum_probs=49.9
Q ss_pred cchhhhhhHHHHHHHHHHHHhHHHHhccCCC--CCCCCccchHHHHHHHHHHHHHHH
Q 038298 93 PLQAQEHVIAERKRREKMNQQFIALSAVIPG--IKQMNKASVLEGTIKHLKELQERG 147 (259)
Q Consensus 93 ~~~~~~h~~~ER~RR~k~n~~~~~LrslvP~--~~k~dK~siL~~ai~YIk~Lq~~v 147 (259)
...+..|+..||+|+..||+.|..||.+||. ..|++|+.||..||+||..|++.+
T Consensus 10 ~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 10 ADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3457789999999999999999999999996 478899999999999999999765
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.92 E-value=6.6e-10 Score=102.85 Aligned_cols=54 Identities=26% Similarity=0.482 Sum_probs=42.8
Q ss_pred cchhhhhhHHHHHHHHHHHHhHHHHhccCC-CCCCCCccchHHHHHHHHHHHHHH
Q 038298 93 PLQAQEHVIAERKRREKMNQQFIALSAVIP-GIKQMNKASVLEGTIKHLKELQER 146 (259)
Q Consensus 93 ~~~~~~h~~~ER~RR~k~n~~~~~LrslvP-~~~k~dK~siL~~ai~YIk~Lq~~ 146 (259)
...+..|+.+||+||++||..|..|++||| ...|+||++||..||.||+.|+..
T Consensus 10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 334678999999999999999999999999 568999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.81 E-value=2.5e-09 Score=100.16 Aligned_cols=55 Identities=27% Similarity=0.465 Sum_probs=49.9
Q ss_pred CcchhhhhhHHHHHHHHHHHHhHHHHhccCC----CCCCCCccchHHHHHHHHHHHHHH
Q 038298 92 SPLQAQEHVIAERKRREKMNQQFIALSAVIP----GIKQMNKASVLEGTIKHLKELQER 146 (259)
Q Consensus 92 ~~~~~~~h~~~ER~RR~k~n~~~~~LrslvP----~~~k~dK~siL~~ai~YIk~Lq~~ 146 (259)
....+.+|+.+||+||++||..|..|+.||| ...|+||++||..||.||+.|+..
T Consensus 10 ~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 10 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 3446889999999999999999999999999 578999999999999999999853
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.62 E-value=6.3e-09 Score=75.23 Aligned_cols=45 Identities=22% Similarity=0.414 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhHHHHhccCCCC---CCCCccchHHHHHHHHHHHHH
Q 038298 101 IAERKRREKMNQQFIALSAVIPGI---KQMNKASVLEGTIKHLKELQE 145 (259)
Q Consensus 101 ~~ER~RR~k~n~~~~~LrslvP~~---~k~dK~siL~~ai~YIk~Lq~ 145 (259)
.-||+|+..||+.|..||.+||.. .|++|..+|.-||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 468999999999999999999964 688999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.42 E-value=3.2e-07 Score=68.75 Aligned_cols=48 Identities=21% Similarity=0.416 Sum_probs=43.0
Q ss_pred HHHHHHhHHHHhccCCCC----CCCCccchHHHHHHHHHHHHHHHHHHHHhh
Q 038298 107 REKMNQQFIALSAVIPGI----KQMNKASVLEGTIKHLKELQERGKKLVEHT 154 (259)
Q Consensus 107 R~k~n~~~~~LrslvP~~----~k~dK~siL~~ai~YIk~Lq~~v~~L~~~~ 154 (259)
|..||++|..|..|||.. .+.+|.+||..|++||++||+..+.+.++.
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e 55 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 55 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999964 578999999999999999999888887643
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.07 E-value=4.6e-06 Score=64.25 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhHHHHhccCCC---CCCCCccchHHHHHHHHHHHHHHHHH
Q 038298 102 AERKRREKMNQQFIALSAVIPG---IKQMNKASVLEGTIKHLKELQERGKK 149 (259)
Q Consensus 102 ~ER~RR~k~n~~~~~LrslvP~---~~k~dK~siL~~ai~YIk~Lq~~v~~ 149 (259)
.||.|-..||+.|..||.+||. ..|..|..+|.-||+||..|++-++.
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 4578888899999999999996 46889999999999999999988764
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.16 E-value=0.0092 Score=43.53 Aligned_cols=67 Identities=12% Similarity=0.193 Sum_probs=52.7
Q ss_pred eEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHHH
Q 038298 183 NVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLALS 253 (259)
Q Consensus 183 ~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~ 253 (259)
.+.|.|.|++++ |++.+|...|-+.|..|.+.+.....+.+ .+.+..++.+ ...+++|.+.|+..-.
T Consensus 5 ~~~l~v~~~Drp-Gila~vt~~la~~~~NI~~i~~~~~~~~~-~~~i~v~~~~--~~~l~~l~~~L~~~~~ 71 (91)
T 1zpv_A 5 KAIITVVGKDKS-GIVAGVSGKIAELGLNIDDISQTVLDEYF-TMMAVVSSDE--KQDFTYLRNEFEAFGQ 71 (91)
T ss_dssp EEEEEEEESCCT-THHHHHHHHHHHTTCEEEEEEEEEETTEE-EEEEEEEESS--CCCHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCC-CHHHHHHHHHHHcCCCEEEEEeEEEcCEE-EEEEEEEeCC--CCCHHHHHHHHHHHHH
Confidence 467899999999 99999999999999999999987776543 3556666665 3467788888776443
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.43 E-value=0.026 Score=47.10 Aligned_cols=65 Identities=15% Similarity=0.199 Sum_probs=48.5
Q ss_pred eEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHH
Q 038298 183 NVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLAL 252 (259)
Q Consensus 183 ~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al 252 (259)
.+.|.|.|++++ |++..|...|.+.|+.|+.+++.+..+.+. .++.+.... ...++|.+.|..++
T Consensus 6 ~~~itv~~~Drp-Giva~vt~~La~~g~NI~d~~~~~~~~~f~-~~~~v~~~~---~~~~~l~~~L~~~~ 70 (192)
T 1u8s_A 6 HLVITAVGTDRP-GICNEVVRLVTQAGCNIIDSRIAMFGKEFT-LLMLISGSP---SNITRVETTLPLLG 70 (192)
T ss_dssp EEEEEEEEECCT-THHHHHHHHHHHTTCEEEEEEEEEETTEEE-EEEEEEECH---HHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCC-cHHHHHHHHHHHCCCCEEeeeeeecCCceE-EEEEEecCC---CCHHHHHHHHHHHH
Confidence 477999999999 999999999999999999999988777654 355555432 23444444444433
No 21
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=96.28 E-value=0.023 Score=40.75 Aligned_cols=51 Identities=18% Similarity=0.138 Sum_probs=41.6
Q ss_pred eEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecC
Q 038298 183 NVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEV 235 (259)
Q Consensus 183 ~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~ 235 (259)
.+.|+|.+.+++ |+|.+|..+|.+.|+.|.+......++ ...+.|...+.+
T Consensus 5 ~~~l~v~~~Dr~-G~L~~I~~~la~~~inI~~i~~~~~~~-~~~~~i~v~~~~ 55 (88)
T 2ko1_A 5 LAGIRIVGEDKN-GMTNQITGVISKFDTNIRTIVLNAKDG-IFTCNLMIFVKN 55 (88)
T ss_dssp EEEEEEEEECCT-THHHHHHHHHTTSSSCEEEEEEEECSS-EEEEEEEEEESS
T ss_pred EEEEEEEEECCC-cHHHHHHHHHHHCCCCeEEEEEEEcCC-EEEEEEEEEECC
Confidence 467889999999 999999999999999999999887666 444556666654
No 22
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.14 E-value=0.037 Score=46.58 Aligned_cols=67 Identities=15% Similarity=0.224 Sum_probs=49.3
Q ss_pred eEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHHHH
Q 038298 183 NVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLALSK 254 (259)
Q Consensus 183 ~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~ 254 (259)
.+.|.|.|++++ |++..|...|.++|+.|+.+.+.+..+.+. .++.+..... ...+....|+++|..
T Consensus 5 ~~~ltv~~~Drp-Giva~vs~~La~~g~NI~da~q~~~~~~f~-m~~~v~~~~~---~~~~~~~~l~~~L~~ 71 (195)
T 2nyi_A 5 SFVVSVAGSDRV-GIVHDFSWALKNISANVESSRMACLGGDFA-MIVLVSLNAK---DGKLIQSALESALPG 71 (195)
T ss_dssp EEEEEEEEECCT-THHHHHHHHHHHTTCEEEEEEEEEETTEEE-EEEEEEESSS---SSHHHHHHHHHHSTT
T ss_pred EEEEEEEeCCCC-cHHHHHHHHHHHCCCCEEEEEeEEECCeEE-EEEEEEecCc---cchhHHHHHHHHHHH
Confidence 477999999999 999999999999999999999988787754 3455554431 222234455555543
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=95.47 E-value=0.092 Score=44.11 Aligned_cols=68 Identities=10% Similarity=0.109 Sum_probs=47.8
Q ss_pred CeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeC-----CeEEEEEEEEEecCceecCHHHHHHHHHHHHH
Q 038298 182 NNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFG-----NYALDITVVAQMEVEFCLTVKELVKNLRLALS 253 (259)
Q Consensus 182 ~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~-----~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~ 253 (259)
..+.|.|.|++++ |++..|-..|-++|+.|..+...+.+ ...+.+.+...+.+ ... ++|.+.|.....
T Consensus 92 ~~~iltv~g~Drp-Giva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~--~~~-~~l~~~l~~~a~ 164 (195)
T 2nyi_A 92 REYELYVEGPDSE-GIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPF--PLY-QEVVTALSRVEE 164 (195)
T ss_dssp EEEEEEEEEECCT-THHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEG--GGH-HHHHHHHHHHHH
T ss_pred cEEEEEEEeCCCc-CHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCC--Ccc-HHHHHHHHHHHH
Confidence 3478999999999 99999999999999999999988876 22332344444432 233 555555554433
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=95.19 E-value=0.14 Score=42.58 Aligned_cols=70 Identities=7% Similarity=0.151 Sum_probs=49.9
Q ss_pred CeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeC-------CeEEEEEEEEEecCceecCHHHHHHHHHHHHHH
Q 038298 182 NNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFG-------NYALDITVVAQMEVEFCLTVKELVKNLRLALSK 254 (259)
Q Consensus 182 ~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~-------~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~ 254 (259)
....|.|.|++++ |++.+|.+.|.+.|++|..+...+.+ ...+.+.+.....+ ....++|.+.|......
T Consensus 92 ~~~~l~v~~~D~~-Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~--~~~~~~l~~~l~~~~~~ 168 (192)
T 1u8s_A 92 YTVEVYVESDDKL-GLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDS--GCNLMQLQEEFDALCTA 168 (192)
T ss_dssp EEEEEEEEESCCT-THHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECT--TSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCc-cHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCC--CCCHHHHHHHHHHHHHH
Confidence 3467899999999 99999999999999999998887765 22333344444443 34666666666654443
No 25
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=92.37 E-value=0.61 Score=42.92 Aligned_cols=66 Identities=12% Similarity=0.179 Sum_probs=49.6
Q ss_pred CeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 182 NNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 182 ~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
..++|.|.|++++ |+...|...|-++|..|+.++-...++.++ ..+...+.+. ..+.++|...|..
T Consensus 11 ~~~~lt~~g~Dr~-Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~-~~~~~~~~~~-~~~~~~l~~~l~~ 76 (415)
T 3p96_A 11 VSVLITVTGVDQP-GVTATLFEVLSRHGVELLNVEQVVIRHRLT-LGVLVCCPAD-VADGPALRHDVEA 76 (415)
T ss_dssp EEEEEEEEEECCT-THHHHHHHHHTTTTCEEEEEEEEEETTEEE-EEEEEEECHH-HHTSHHHHHHHHH
T ss_pred CeEEEEEEcCCCC-CHHHHHHHHHHHCCCCEEEeeeEEECCEeE-EEEEEEecCC-cCCHHHHHHHHHH
Confidence 4578999999999 999999999999999999999888888654 3455555432 2244555555543
No 26
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=91.27 E-value=2 Score=38.86 Aligned_cols=66 Identities=5% Similarity=0.136 Sum_probs=47.1
Q ss_pred CeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEe--CCeEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 182 NNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPF--GNYALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 182 ~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~--~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
..+.|.|.|++++ |+...|-..|-+.|+.|+.++-... .+.++ ..+...+.+ ...+.++|.+.+..
T Consensus 21 ~~~iLtv~c~Drp-GIVa~VS~~La~~g~NI~d~~q~~d~~~g~Ff-Mr~~~~~~~-~~~~~~~L~~~l~~ 88 (302)
T 3o1l_A 21 RTFRLVIACPDRV-GIVAKVSNFLASHNGWITEASHHSDNLSGWFF-MRHEIRADT-LPFDLDGFREAFTP 88 (302)
T ss_dssp CEEEEEEEEECCT-THHHHHHHHHHHTTCCEEEEEEEEETTTTEEE-EEEEEEGGG-SSSCHHHHHHHHHH
T ss_pred ceEEEEEECCCCC-CHHHHHHHHHHHCCCCEEEeeEEecCCCCeEE-EEEEEecCC-CCCCHHHHHHHHHH
Confidence 3578999999999 9999999999999999999887754 34332 223333332 13566676666644
No 27
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=91.14 E-value=1.7 Score=38.94 Aligned_cols=67 Identities=9% Similarity=0.233 Sum_probs=47.7
Q ss_pred CCeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEE--eCCeEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 181 DNNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIP--FGNYALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 181 ~~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~--~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
...+.|.|.|++++ |++..|-..|-++|+.|+.++... ..+.++ ..+...+.+. ..+.++|.+.+..
T Consensus 4 ~~~~iLtv~g~Drp-GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ff-mr~~~~~~~~-~~~~~~L~~~f~~ 72 (288)
T 3obi_A 4 HHQYVLTLSCPDRA-GIVSAVSTFLFENGQNILDAQQYNDTESGHFF-MRVVFNAAAK-VIPLASLRTGFGV 72 (288)
T ss_dssp CCEEEEEEEEECCT-THHHHHHHHHHHTTEEEEEEEEEEETTTTEEE-EEEEEEESSC-CCCHHHHHHHHHH
T ss_pred CCeEEEEEECCCCC-CHHHHHHHHHHHCCCcEEeeeeeecCCCCceE-EEEEEEcCCC-CCCHHHHHHHHHH
Confidence 34578999999999 999999999999999999988642 234332 2344455442 3566676666643
No 28
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=91.08 E-value=1.2 Score=39.88 Aligned_cols=64 Identities=9% Similarity=0.059 Sum_probs=46.5
Q ss_pred eEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEE--eCCeEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 183 NVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIP--FGNYALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 183 ~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~--~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
.+.|.|.|++++ |++..|-..|-+.|+.|+.++... ..+.++ ..+.+...+ ..+.++|.+.+..
T Consensus 8 ~~vLtv~c~Drp-GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ff-mr~~~~~~~--~~~~~~L~~~f~~ 73 (286)
T 3n0v_A 8 TWILTADCPSML-GTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFF-IRVEFRQPD--DFDEAGFRAGLAE 73 (286)
T ss_dssp CEEEEEEEECCT-THHHHHHHHHHHTTCEEEEEEEEEETTTTEEE-EEEEEECCS--SCCHHHHHHHHHH
T ss_pred cEEEEEEeCCCC-CHHHHHHHHHHHCCCCeeeeeeeccCCCCeeE-EEEEEecCC--CCCHHHHHHHHHH
Confidence 478999999999 999999999999999999988763 334332 234444443 3566666666543
No 29
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=90.67 E-value=0.65 Score=36.82 Aligned_cols=35 Identities=11% Similarity=0.257 Sum_probs=32.3
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEe
Q 038298 185 LIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPF 220 (259)
Q Consensus 185 ~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~ 220 (259)
-|+|.|.++. |++.+|+.+|.+.++++...++.+.
T Consensus 2 ~~~v~~~dr~-g~l~~i~~~l~~~~~ni~~~~~~~~ 36 (190)
T 2jhe_A 2 RLEVFCEDRL-GLTRELLDLLVLRGIDLRGIEIDPI 36 (190)
T ss_dssp EEEEEECSCT-THHHHHHHHHHHTTCCEEEEEEETT
T ss_pred EEEEEEecCC-cHHHHHHHHHHHcCCCeEEEEEecC
Confidence 4789999999 9999999999999999999998664
No 30
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=90.66 E-value=1.3 Score=36.57 Aligned_cols=48 Identities=10% Similarity=0.186 Sum_probs=39.3
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCC-eEEEEEEEEE
Q 038298 184 VLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGN-YALDITVVAQ 232 (259)
Q Consensus 184 v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~-~~l~~tI~aq 232 (259)
..|.|.+++++ |.|.+|...|.+.|+.|.+.++.+..+ ....++|.+.
T Consensus 4 ~~IsV~v~Nrp-GvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~ 52 (164)
T 2f1f_A 4 RILSVLLENES-GALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV 52 (164)
T ss_dssp EEEEEEEECCT-THHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE
T ss_pred EEEEEEEeCCC-cHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe
Confidence 45788899999 999999999999999999988876654 4444566666
No 31
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=90.01 E-value=1.9 Score=38.77 Aligned_cols=67 Identities=12% Similarity=0.227 Sum_probs=45.8
Q ss_pred CeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEE--eCCeEEEEEEEEEecC-ceecCHHHHHHHHHH
Q 038298 182 NNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIP--FGNYALDITVVAQMEV-EFCLTVKELVKNLRL 250 (259)
Q Consensus 182 ~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~--~~~~~l~~tI~aq~~~-~~~~t~~dl~~~L~~ 250 (259)
..+.|.+.|++++ |++..|-..|-+.|+.|+.++-.. ..+.++ ..+.....- ....+.++|...+..
T Consensus 9 ~~~vLtv~c~Dr~-GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ff-mr~~~~~~~~~~~~~~~~L~~~f~~ 78 (292)
T 3lou_A 9 HQFVLTLSCPSAA-GQVAAVVGLLDRHRCYVDELTVFDDDLSARFF-VRCVFHATDDADALRVDALRREFEP 78 (292)
T ss_dssp CEEEEEEEEESCS-CHHHHHHHHHHHTTEEEEEEEEEEETTTTEEE-EEEEEEECC----CCHHHHHHHHHH
T ss_pred CcEEEEEEcCCCC-CHHHHHHHHHHHCCCCEEeeEEEecCCCCceE-EEEEEEccCcccCCCHHHHHHHHHH
Confidence 4578999999999 999999999999999999988763 334332 223333330 113566666666643
No 32
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=89.46 E-value=1.2 Score=38.89 Aligned_cols=62 Identities=11% Similarity=0.127 Sum_probs=44.9
Q ss_pred eEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeC----CeEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 183 NVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFG----NYALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 183 ~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~----~~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
.+-|.|.+.+++ |+|.+|+..|-+.+..|.+.+..... +..- ++..++.+. .+++|.++|++
T Consensus 4 ~VtL~I~a~DRp-GLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A--~I~IEV~d~---~Le~LL~kLrk 69 (223)
T 1y7p_A 4 LRGLRIIAENKI-GVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKA--LIYFEIEGG---DFEKILERVKT 69 (223)
T ss_dssp CEEEEEEEECCT-THHHHHHHHCC----CEEEEEEEECCSSTTTTEE--EEEEEECSS---CHHHHHHHHHT
T ss_pred eEEEEEEEcCCC-CHHHHHHHHHHHcCCCceEEEEEccccCCcCCEE--EEEEEECCC---CHHHHHHHHhC
Confidence 467889999999 99999999999999999999987754 3332 233777764 67888887764
No 33
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=88.91 E-value=1.7 Score=36.00 Aligned_cols=48 Identities=15% Similarity=0.188 Sum_probs=39.2
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCC-eEEEEEEEEE
Q 038298 184 VLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGN-YALDITVVAQ 232 (259)
Q Consensus 184 v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~-~~l~~tI~aq 232 (259)
..|.|..++++ |.|.+|...|...|+.|.+.++.+..+ ....++|.+.
T Consensus 5 ~~IsV~veNrp-GvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~ 53 (165)
T 2pc6_A 5 HIISLLMENEA-GALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN 53 (165)
T ss_dssp EEEEEEEECST-THHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE
T ss_pred EEEEEEEeCCC-cHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe
Confidence 46788899999 999999999999999999988876653 4444666665
No 34
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=85.67 E-value=3.7 Score=34.92 Aligned_cols=49 Identities=4% Similarity=0.059 Sum_probs=39.6
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCC-eEEEEEEEEEe
Q 038298 184 VLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGN-YALDITVVAQM 233 (259)
Q Consensus 184 v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~-~~l~~tI~aq~ 233 (259)
..|.|..++++ |.|.+|...|...|+.|.+..+....+ ....+||.+.-
T Consensus 30 ~~LsVlVeN~p-GvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g 79 (193)
T 2fgc_A 30 HLVSMLVHNKP-GVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG 79 (193)
T ss_dssp EEEEEEEECCT-THHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE
T ss_pred EEEEEEECCCC-hHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEEC
Confidence 46778889999 999999999999999999988876555 34446676653
No 35
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=85.52 E-value=3.7 Score=36.72 Aligned_cols=36 Identities=11% Similarity=0.348 Sum_probs=33.2
Q ss_pred CeEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEE
Q 038298 182 NNVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTI 218 (259)
Q Consensus 182 ~~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs 218 (259)
..+.|.+.|++++ |+...|-..|-++|+.|+.++..
T Consensus 6 ~~~vLtv~c~Dr~-GIVa~Vs~~La~~g~NI~d~~q~ 41 (287)
T 3nrb_A 6 NQYVLSLACQDAP-GIVSEVSTFLFNNGANIVEAEQF 41 (287)
T ss_dssp TEEEEEEEEECCT-THHHHHHHHHHHTTCEEEEEEEE
T ss_pred CeEEEEEECCCCC-CHHHHHHHHHHHCCCCEEeeeee
Confidence 4578999999999 99999999999999999998865
No 36
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=69.52 E-value=24 Score=27.12 Aligned_cols=56 Identities=14% Similarity=0.226 Sum_probs=36.4
Q ss_pred EEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHH
Q 038298 186 IRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRL 250 (259)
Q Consensus 186 I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~ 250 (259)
|-+..+.++ |.+.+++++|.+.|+.|...-.+.-++... +....+ ..+..++.|++
T Consensus 75 v~v~~~d~p-Gvla~i~~~L~~~~InI~~~~~~~~~~~~~---~~i~~~-----d~~~A~~~L~~ 130 (144)
T 2f06_A 75 VGISCPNVP-GALAKVLGFLSAEGVFIEYMYSFANNNVAN---VVIRPS-----NMDKCIEVLKE 130 (144)
T ss_dssp EEEEEESST-THHHHHHHHHHHTTCCEEEEEEEEETTEEE---EEEEES-----CHHHHHHHHHH
T ss_pred EEEEeCCCC-cHHHHHHHHHHHCCCCEEEEEEEccCCcEE---EEEEeC-----CHHHHHHHHHH
Confidence 555678999 999999999999999996644332234332 223443 34555555554
No 37
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=63.74 E-value=21 Score=31.73 Aligned_cols=52 Identities=10% Similarity=0.055 Sum_probs=41.1
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCc
Q 038298 184 VLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVE 236 (259)
Q Consensus 184 v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~ 236 (259)
..|-+..++++ |.|.++|..|...|+....-..-+..+..-.|.|.+.+++.
T Consensus 201 tsl~f~~~~~p-GaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~ 252 (283)
T 2qmx_A 201 TSIVFALPNEQ-GSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGH 252 (283)
T ss_dssp EEEEEEEECCT-THHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESC
T ss_pred EEEEEEcCCCC-chHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecC
Confidence 34445556889 99999999999999999999988887765556677777653
No 38
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=62.57 E-value=31 Score=27.55 Aligned_cols=39 Identities=8% Similarity=0.029 Sum_probs=30.2
Q ss_pred EEEeCCeEEEEEEecC---CCCCHHHHHHHHHHhCCCeEEEEE
Q 038298 177 VRVSDNNVLIRIHCEK---QNIGFISNIVSEIEKLHLVVINSR 216 (259)
Q Consensus 177 V~~~~~~v~I~I~c~~---~~~gll~~Il~aLe~lgL~Vv~as 216 (259)
+.+.++-..|.|.... .+ |.+.+++++|.+.|+.|...+
T Consensus 97 i~~~~~~a~vsvvG~~m~~~~-Gv~a~i~~aL~~~~InI~~is 138 (167)
T 2re1_A 97 IDGDDTVCKVSAVGLGMRSHV-GVAAKIFRTLAEEGINIQMIS 138 (167)
T ss_dssp EEEESSEEEEEEECSSCTTCC-CHHHHHHHHHHHTTCCCCEEE
T ss_pred EEecCCEEEEEEECCCcCCCc-CHHHHHHHHHHHCCCcEEEEE
Confidence 4445566777776654 77 999999999999999997644
No 39
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=60.70 E-value=32 Score=27.38 Aligned_cols=65 Identities=9% Similarity=0.080 Sum_probs=42.0
Q ss_pred EEEeCCeEEEEEEec---CCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHH
Q 038298 177 VRVSDNNVLIRIHCE---KQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLAL 252 (259)
Q Consensus 177 V~~~~~~v~I~I~c~---~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al 252 (259)
+.+.++-..|.|... ..+ |.+.+++++|.+.|+.|.-.+. ... .+++.....+ .++.++.|++++
T Consensus 89 v~~~~~~a~vsvVG~gm~~~~-Gv~a~~f~aL~~~~InI~~is~---Se~--~is~vv~~~d-----~~~Av~~Lh~~f 156 (167)
T 2dt9_A 89 AILRPDIAKVSIVGVGLASTP-EVPAKMFQAVASTGANIEMIAT---SEV--RISVIIPAEY-----AEAALRAVHQAF 156 (167)
T ss_dssp EEEECSEEEEEEEESSGGGST-HHHHHHHHHHHHTTCCCCEEEE---CSS--EEEEEEEGGG-----HHHHHHHHHHHT
T ss_pred EEEeCCEEEEEEECCCcccCc-CHHHHHHHHHHHCCCCEEEEEc---cCC--EEEEEEeHHH-----HHHHHHHHHHHH
Confidence 555566677777664 378 9999999999999999944431 222 2334444433 455566666654
No 40
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=59.08 E-value=83 Score=28.49 Aligned_cols=44 Identities=9% Similarity=0.189 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCc
Q 038298 192 KQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVE 236 (259)
Q Consensus 192 ~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~ 236 (259)
+++ |.|.++|..|...|+....-..-+..+..-.|.|.+.+++.
T Consensus 217 ~~p-GaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~ 260 (329)
T 3luy_A 217 TGP-GVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAA 260 (329)
T ss_dssp CST-THHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSC
T ss_pred CCC-CHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCC
Confidence 478 99999999999999999999999999988788888888764
No 41
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=56.14 E-value=24 Score=26.13 Aligned_cols=63 Identities=19% Similarity=0.244 Sum_probs=41.2
Q ss_pred EEEEEEecCCCC-CHHHHHHHHHHhCCCeEEEEEEEEeCCe-E-EEEEEEEEecCceecCHHHHHHHH
Q 038298 184 VLIRIHCEKQNI-GFISNIVSEIEKLHLVVINSRTIPFGNY-A-LDITVVAQMEVEFCLTVKELVKNL 248 (259)
Q Consensus 184 v~I~I~c~~~~~-gll~~Il~aLe~lgL~Vv~asvs~~~~~-~-l~~tI~aq~~~~~~~t~~dl~~~L 248 (259)
+.|.|.|..... .....++++|+..++.+.+.....+++. + +..++.+.-.+. -.++.++.+|
T Consensus 9 Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~~~~veI~A~L~at~~~~--~~Le~iv~rL 74 (94)
T 2lqj_A 9 YQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAGDDNITLTAHLLMVGHTP--AKLERLVAEL 74 (94)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECSSSCEEEEEEEEEESCCH--HHHHHHHHHH
T ss_pred EEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCCCCeEEEEEEEEecCCCH--HHHHHHHHHH
Confidence 678999986542 5678889999999999988886665554 3 444555544432 2244444443
No 42
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=55.79 E-value=42 Score=25.68 Aligned_cols=37 Identities=11% Similarity=0.167 Sum_probs=30.0
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCC
Q 038298 185 LIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGN 222 (259)
Q Consensus 185 ~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~ 222 (259)
.|.|..++++ |.+.+|...|.+.|+.|....+....+
T Consensus 8 ~i~v~v~d~~-G~l~~i~~~la~~~inI~~i~~~~~~~ 44 (144)
T 2f06_A 8 QLSIFLENKS-GRLTEVTEVLAKENINLSALCIAENAD 44 (144)
T ss_dssp EEEEEECSSS-SHHHHHHHHHHHTTCCEEEEEEEECSS
T ss_pred EEEEEecCCC-cHHHHHHHHHHHCCCCEEEEEEEecCC
Confidence 4566778999 999999999999999998766554444
No 43
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=51.69 E-value=47 Score=27.09 Aligned_cols=65 Identities=12% Similarity=0.121 Sum_probs=41.1
Q ss_pred EEEeCCeEEEEEEec---CCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHH
Q 038298 177 VRVSDNNVLIRIHCE---KQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLAL 252 (259)
Q Consensus 177 V~~~~~~v~I~I~c~---~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al 252 (259)
+.+.++-..|.|... ..+ |.+.+++++|.+.|+.|.-.+.+ +.. +++...-.+ .+..++.|+++|
T Consensus 90 v~~~~~va~VsvVG~gm~~~~-Gvaa~~f~aLa~~~InI~~IstS---ei~--Is~vV~~~d-----~~~Av~aLH~~f 157 (181)
T 3s1t_A 90 LLYDDHIGKVSLIGAGMRSHP-GVTATFCEALAAVGVNIELISTS---EIR--ISVLCRDTE-----LDKAVVALHEAF 157 (181)
T ss_dssp EEEESCEEEEEEEEECCTTCH-HHHHHHHHHHHHTTCCCCEEEEE---TTE--EEEEEEGGG-----HHHHHHHHHHHH
T ss_pred EEEeCCEEEEEEEecccccCc-hHHHHHHHHHHHCCCcEEEEEcC---CCE--EEEEEeHHH-----HHHHHHHHHHHH
Confidence 455566667776543 567 99999999999999988665521 222 233334332 455566666655
No 44
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=51.35 E-value=31 Score=31.15 Aligned_cols=51 Identities=10% Similarity=0.137 Sum_probs=39.5
Q ss_pred EEEEEEec-CCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecC
Q 038298 184 VLIRIHCE-KQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEV 235 (259)
Q Consensus 184 v~I~I~c~-~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~ 235 (259)
..|-+..+ +++ |.|.++|..|...|+....-..-+..+..-.|.|.+.+++
T Consensus 202 TSl~f~~~~~~p-GaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg 253 (313)
T 3mwb_A 202 TTVVVPLPEDHP-GALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADG 253 (313)
T ss_dssp EEEEEECSSCCT-THHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEES
T ss_pred EEEEEEeCCCCC-CHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeC
Confidence 44555665 788 9999999999999999999888887766545566667664
No 45
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=51.24 E-value=38 Score=29.86 Aligned_cols=51 Identities=6% Similarity=0.113 Sum_probs=39.8
Q ss_pred eEEEEEEe---cCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEec
Q 038298 183 NVLIRIHC---EKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQME 234 (259)
Q Consensus 183 ~v~I~I~c---~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~ 234 (259)
...|-+.. ++++ |.|.++|..|...|+....-..-+..+..-.|.|.+.++
T Consensus 186 ktsl~f~~~~~~~~p-GaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e 239 (267)
T 2qmw_A 186 ATSLMFLITPMHDKP-GLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD 239 (267)
T ss_dssp CSEEEEEEEESSCCT-THHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES
T ss_pred eEEEEEEcCCCCCCc-ChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe
Confidence 34455566 6788 999999999999999999988888777644556666666
No 46
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=50.95 E-value=50 Score=26.65 Aligned_cols=65 Identities=8% Similarity=0.137 Sum_probs=41.4
Q ss_pred EEEeCCeEEEEEEec---CCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHH
Q 038298 177 VRVSDNNVLIRIHCE---KQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLAL 252 (259)
Q Consensus 177 V~~~~~~v~I~I~c~---~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al 252 (259)
+.+.++-.+|.|... ..+ |.+.+++++|.+.|+.|.-.+ +.. ..+ .+..... ..+..++.|+++|
T Consensus 89 v~~~~~~a~VsvVG~gm~~~~-Gv~arif~aLa~~~InI~~is--tSe-~~I--s~vV~~~-----d~~~Av~~Lh~~F 156 (178)
T 2dtj_A 89 VLYDDQVGKVSLVGAGMKSHP-GVTAEFMEALRDVNVNIELIS--TSE-IRI--SVLIRED-----DLDAAARALHEQF 156 (178)
T ss_dssp EEEESCEEEEEEEEECCTTCH-HHHHHHHHHHHHTTCCCCEEE--EET-TEE--EEEEEGG-----GHHHHHHHHHHHH
T ss_pred EEEeCCeEEEEEEcCCcccCc-cHHHHHHHHHHHCCCCEEEEE--cCC-CeE--EEEEeHH-----HHHHHHHHHHHHH
Confidence 455667777887654 566 999999999999999996643 222 222 3333222 2455566666655
No 47
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=50.94 E-value=43 Score=28.14 Aligned_cols=57 Identities=11% Similarity=0.176 Sum_probs=38.1
Q ss_pred EEEeCCeEEEEEE-ecCCCCCHHHHHHHHHHhCCCeE--EEEEEEEeCCeEEEEEEEEEec
Q 038298 177 VRVSDNNVLIRIH-CEKQNIGFISNIVSEIEKLHLVV--INSRTIPFGNYALDITVVAQME 234 (259)
Q Consensus 177 V~~~~~~v~I~I~-c~~~~~gll~~Il~aLe~lgL~V--v~asvs~~~~~~l~~tI~aq~~ 234 (259)
|....+.+.|.|. .+..+ |.+.+|+.+|.+.|+.| +.-+++...+...+++|.+.-.
T Consensus 29 Ia~~~~~a~Iti~g~~~~p-G~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~ 88 (200)
T 4go7_X 29 VAHDRSEAKVTIVGLPDIP-GYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD 88 (200)
T ss_dssp EEEECSEEEEEEEEEECST-THHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGG
T ss_pred EEccCCEEEEEEecCCCCc-cHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchh
Confidence 4555677788874 67888 99999999999999877 4334444444444455655444
No 48
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=50.67 E-value=38 Score=26.96 Aligned_cols=39 Identities=13% Similarity=0.200 Sum_probs=30.8
Q ss_pred EEEeCCeEEEEEE-ecCCCCCHHHHHHHHHHhCCCeEEEEE
Q 038298 177 VRVSDNNVLIRIH-CEKQNIGFISNIVSEIEKLHLVVINSR 216 (259)
Q Consensus 177 V~~~~~~v~I~I~-c~~~~~gll~~Il~aLe~lgL~Vv~as 216 (259)
|....+...|.|. .+.++ |.+.+|++.|.+.|+.|....
T Consensus 19 Ia~~~~~~~i~v~~~~~~~-G~~~~if~~La~~~Invd~i~ 58 (167)
T 2re1_A 19 IAFDKNQARINVRGVPDKP-GVAYQILGAVADANIEVDMII 58 (167)
T ss_dssp EEEECCCEEEEEEEEECCT-THHHHHHHHHHTTTCCCCCEE
T ss_pred EEecCCEEEEEEecCCCCc-CHHHHHHHHHHHcCCeEEEEE
Confidence 4455667788887 47888 999999999999998885443
No 49
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=42.22 E-value=47 Score=22.61 Aligned_cols=39 Identities=15% Similarity=0.211 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhHHHHhccCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHhh
Q 038298 103 ERKRREKMNQQFIALSAVIPGIKQMNKASVLEGTIKHLKELQERGKKLVEHT 154 (259)
Q Consensus 103 ER~RR~k~n~~~~~LrslvP~~~k~dK~siL~~ai~YIk~Lq~~v~~L~~~~ 154 (259)
||++|.....+..+-++= ..--.|+..|+.+++.|+.+.
T Consensus 1 Ekr~rrrerNR~AA~rcR-------------~rKk~~~~~Le~~v~~L~~~n 39 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCR-------------NRRRELTDTLQAETDQLEDEK 39 (63)
T ss_dssp CHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777776652 334566777777777766654
No 50
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=37.77 E-value=24 Score=24.02 Aligned_cols=20 Identities=15% Similarity=0.154 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhhhhc
Q 038298 138 KHLKELQERGKKLVEHTKRK 157 (259)
Q Consensus 138 ~YIk~Lq~~v~~L~~~~~~~ 157 (259)
.||..|+++|+.|+..+...
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999987654
No 51
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=36.10 E-value=1.4e+02 Score=23.78 Aligned_cols=37 Identities=5% Similarity=0.136 Sum_probs=28.7
Q ss_pred EEEeCCeEEEEEE-ecCCCCCHHHHHHHHHHhCCCeEEE
Q 038298 177 VRVSDNNVLIRIH-CEKQNIGFISNIVSEIEKLHLVVIN 214 (259)
Q Consensus 177 V~~~~~~v~I~I~-c~~~~~gll~~Il~aLe~lgL~Vv~ 214 (259)
|....+...|.|. .+.++ |.+.+|++.|.+.|+.|.-
T Consensus 9 Ia~~~~~~~Itv~~~~~~~-G~~a~if~~La~~~InId~ 46 (178)
T 2dtj_A 9 VATDKSEAKVTVLGISDKP-GEAAKVFRALADAEINIDM 46 (178)
T ss_dssp EEEECSEEEEEEEEEECST-THHHHHHHHHHHTTCCCCE
T ss_pred EEecCCEEEEEEecCCCCc-cHHHHHHHHHHHcCCCEEE
Confidence 3455677788884 57788 9999999999999965533
No 52
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=35.87 E-value=1.2e+02 Score=22.95 Aligned_cols=52 Identities=2% Similarity=0.084 Sum_probs=38.2
Q ss_pred CCeEEEEEEecCCCCCHHHHHHHHHHhC---CCeEEEEEEEEeCCeEEEEEEEEEecC
Q 038298 181 DNNVLIRIHCEKQNIGFISNIVSEIEKL---HLVVINSRTIPFGNYALDITVVAQMEV 235 (259)
Q Consensus 181 ~~~v~I~I~c~~~~~gll~~Il~aLe~l---gL~Vv~asvs~~~~~~l~~tI~aq~~~ 235 (259)
..++.++|.....+ ++...|.++++.+ +.++ ...-+. +|+.+.+||.+.+..
T Consensus 34 Pc~y~~KvIG~a~~-~~~~~V~~vv~~~~p~d~~~-~~r~Ss-~GkY~Svtv~v~v~S 88 (109)
T 1rwu_A 34 PTPFTYKVMGQALP-ELVDQVVEVVQRHAPGDYTP-TVKPSS-KGNYHSVSITINATH 88 (109)
T ss_dssp CCCEEEEEEEECCT-THHHHHHHHHHHHSSSCCCE-EEEESS-CSSEEEEEEEECCSS
T ss_pred CCCceEEEEEECcH-HHHHHHHHHHHHhCCCCCCc-eecCCC-CCeEEEEEEEEEECC
Confidence 35688899888888 8999999999887 5666 444444 566666777766664
No 53
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=35.64 E-value=48 Score=20.94 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 038298 133 LEGTIKHLKELQERGKKLVEHT 154 (259)
Q Consensus 133 L~~ai~YIk~Lq~~v~~L~~~~ 154 (259)
+.+--+||++|+++..+|+.-+
T Consensus 5 vkelknyiqeleernaelknlk 26 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLK 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHH
Confidence 4566789999999998887644
No 54
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=35.41 E-value=1.6e+02 Score=23.09 Aligned_cols=39 Identities=13% Similarity=0.130 Sum_probs=29.8
Q ss_pred EEEeCCeEEEEEEe-cCCCCCHHHHHHHHHHhCCCeEEEEE
Q 038298 177 VRVSDNNVLIRIHC-EKQNIGFISNIVSEIEKLHLVVINSR 216 (259)
Q Consensus 177 V~~~~~~v~I~I~c-~~~~~gll~~Il~aLe~lgL~Vv~as 216 (259)
|....+-.+|.|.. +.++ |.+.+|+++|.+.|+.|.-.+
T Consensus 10 Ia~~~~~a~Itv~g~~~~~-G~~a~if~~La~~~InVd~I~ 49 (167)
T 2dt9_A 10 VALDLDHAQIGLIGIPDQP-GIAAKVFQALAERGIAVDMII 49 (167)
T ss_dssp EEEECSEEEEEEEEEECST-THHHHHHHHHHHHTCCCSCEE
T ss_pred EEEeCCEEEEEEecCCCCC-CHHHHHHHHHHHcCCcEEEEE
Confidence 45556677787754 6677 999999999999998885433
No 55
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=34.34 E-value=28 Score=23.37 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 038298 138 KHLKELQERGKKLVEHTKR 156 (259)
Q Consensus 138 ~YIk~Lq~~v~~L~~~~~~ 156 (259)
.||..|+.+++.|+..+..
T Consensus 44 ~~~~~L~~ri~~Le~~l~~ 62 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNR 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4777777777777776543
No 56
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=34.31 E-value=47 Score=19.09 Aligned_cols=20 Identities=10% Similarity=0.041 Sum_probs=15.5
Q ss_pred CCccchHHHHHHHHHHHHHH
Q 038298 127 MNKASVLEGTIKHLKELQER 146 (259)
Q Consensus 127 ~dK~siL~~ai~YIk~Lq~~ 146 (259)
+...-+|-+|.+|+...+++
T Consensus 2 ~~nvq~LLeAAeyLErrEre 21 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRERE 21 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHh
Confidence 45667899999999877653
No 57
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=33.07 E-value=93 Score=29.23 Aligned_cols=69 Identities=14% Similarity=0.178 Sum_probs=43.1
Q ss_pred EEEEeCCeEEEEEEec---CCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHH
Q 038298 176 VVRVSDNNVLIRIHCE---KQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLAL 252 (259)
Q Consensus 176 eV~~~~~~v~I~I~c~---~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al 252 (259)
++.+.++-..|.|... ..+ |.+.+++++|.+.|+.|.-.+ ++.+-.++.+.....+ .+..++.|+++|
T Consensus 397 ~v~~~~~~a~vsvVG~gm~~~~-Gvaak~f~aL~~~~InI~mis---qgtSe~~Is~vV~~~d-----~~~Av~aLh~~f 467 (473)
T 3c1m_A 397 DVSVDKDVCVISVVGAGMRGAK-GIAGKIFTAVSESGANIKMIA---QGSSEVNISFVIDEKD-----LLNCVRKLHEKF 467 (473)
T ss_dssp EEEEEEEEEEEEEECTTTTTCT-THHHHHHHHHHHHTCCCCEEE---ESSCSSEEEEEEEGGG-----HHHHHHHHHHHH
T ss_pred eEEEeCCcEEEEEEecCCCCCh-hHHHHHHHHHHHCCCCEEEEe---cCCCCceEEEEEcHHH-----HHHHHHHHHHHH
Confidence 3444455566777654 467 999999999999999984333 2333233344444443 456667777765
Q ss_pred H
Q 038298 253 S 253 (259)
Q Consensus 253 ~ 253 (259)
.
T Consensus 468 ~ 468 (473)
T 3c1m_A 468 I 468 (473)
T ss_dssp T
T ss_pred h
Confidence 3
No 58
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=32.25 E-value=1.4e+02 Score=27.48 Aligned_cols=65 Identities=11% Similarity=0.137 Sum_probs=42.2
Q ss_pred EEEeCCeEEEEEEec---CCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHH
Q 038298 177 VRVSDNNVLIRIHCE---KQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLAL 252 (259)
Q Consensus 177 V~~~~~~v~I~I~c~---~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al 252 (259)
+.+.++-..|.|... ..+ |.+.+++++|.+.|+.|.-.+.+ .- ++.+.....+ .+..++.|+++|
T Consensus 338 v~~~~~~a~vsvVG~gm~~~~-Gv~a~~f~aL~~~~InI~~is~S--e~---~is~vV~~~d-----~~~Av~~Lh~~f 405 (421)
T 3ab4_A 338 VLYDDQVGKVSLVGAGMKSHP-GVTAEFMEALRDVNVNIELISTS--EI---RISVLIREDD-----LDAAARALHEQF 405 (421)
T ss_dssp EEEECCEEEEEEECGGGTSCT-THHHHHHHHHHHTTCCCCEEEEE--TT---EEEEEEEGGG-----HHHHHHHHHHHT
T ss_pred EEEeCCeEEEEEEccCcccCc-cHHHHHHHHHHHCCCCEEEEEcC--CC---eEEEEEeHHH-----HHHHHHHHHHHH
Confidence 455566677777654 567 99999999999999998644321 22 2233334332 556677777765
No 59
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=31.15 E-value=92 Score=25.65 Aligned_cols=77 Identities=5% Similarity=0.057 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHhhhh---cCCCccccccccCCCCCceEEEEeCCeEEEEEEecCCC-----CCHHHHHHHHHHhC
Q 038298 137 IKHLKELQERGKKLVEHTKR---KAPESVVSVKRSQQTLPDIVVRVSDNNVLIRIHCEKQN-----IGFISNIVSEIEKL 208 (259)
Q Consensus 137 i~YIk~Lq~~v~~L~~~~~~---~~~~s~~~~k~~~~~~p~VeV~~~~~~v~I~I~c~~~~-----~gll~~Il~aLe~l 208 (259)
.+|..+|-+++..+..+... ...+... -..-+|.+++.++.+.+.+...... ..-+.++-++|.+.
T Consensus 68 ~~w~qqL~qqI~~~~~~g~q~a~IrL~Ppe------LG~l~V~l~~~~~q~~v~f~a~~~~vReaLe~~lp~LRe~La~q 141 (169)
T 2rrl_A 68 HEWQQTFSQQVMLFTRQGQQSAQLRLHPEE------LGQVHISLKLDDNQAQLQMVSPHSHVRAALEAALPMLRTQLAES 141 (169)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEECCSSGG------GCCEEEEEEEETTEEEEEEECCSSHHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCCceEEEEEECccc------cCcEEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHc
Confidence 36667777777665443211 1111000 1122566778899999999887653 14588889999999
Q ss_pred CCeEEEEEEEE
Q 038298 209 HLVVINSRTIP 219 (259)
Q Consensus 209 gL~Vv~asvs~ 219 (259)
||.+...+|+.
T Consensus 142 Gi~L~~v~Vs~ 152 (169)
T 2rrl_A 142 GIQLGQSSISS 152 (169)
T ss_dssp TCEEEEEEEES
T ss_pred CCCeeeEEEec
Confidence 99999988865
No 60
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=30.56 E-value=59 Score=20.31 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=24.9
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHhhhh
Q 038298 127 MNKASVLEGTIKHLKELQERGKKLVEHTKR 156 (259)
Q Consensus 127 ~dK~siL~~ai~YIk~Lq~~v~~L~~~~~~ 156 (259)
|.-+.-|+++=+-|..|+.+++.|++++..
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566899999999999999999998754
No 61
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=29.52 E-value=49 Score=18.55 Aligned_cols=19 Identities=32% Similarity=0.237 Sum_probs=14.9
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 038298 131 SVLEGTIKHLKELQERGKK 149 (259)
Q Consensus 131 siL~~ai~YIk~Lq~~v~~ 149 (259)
|-|-+|-+|+.+|.++++.
T Consensus 4 sgliearkyleqlhrklkn 22 (26)
T 1xkm_B 4 SGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4577888999999887653
No 62
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=28.20 E-value=50 Score=31.23 Aligned_cols=51 Identities=6% Similarity=0.124 Sum_probs=38.5
Q ss_pred eEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEec
Q 038298 183 NVLIRIHCEKQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQME 234 (259)
Q Consensus 183 ~v~I~I~c~~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~ 234 (259)
...|-+..++++ |.|.++|..+...|+.+.+-..-+..+..-.|.|.+.++
T Consensus 34 KTSLiFsl~n~p-GAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~e 84 (429)
T 1phz_A 34 AISLIFSLKEEV-GALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLD 84 (429)
T ss_dssp CEEEEEEEECCT-THHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBC
T ss_pred eEEEEEEeCCCc-cHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEe
Confidence 345555667888 999999999999999998877777665544455666666
No 63
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=27.15 E-value=1.8e+02 Score=22.22 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEEEeCC--eEEEEEEEEEecCceecCHHHHHHHHHHHH
Q 038298 193 QNIGFISNIVSEIEKLHLVVINSRTIPFGN--YALDITVVAQMEVEFCLTVKELVKNLRLAL 252 (259)
Q Consensus 193 ~~~gll~~Il~aLe~lgL~Vv~asvs~~~~--~~l~~tI~aq~~~~~~~t~~dl~~~L~~al 252 (259)
++ .-+-++.++|.+.|+..+..+ ..++ +--+.+|..-++++ .++++++.|.++.
T Consensus 14 rp-~kld~V~~AL~~~G~~~t~v~--~~gGf~r~g~~~leivV~De---~Vd~vi~~I~~~a 69 (114)
T 3m05_A 14 QD-KDANYLSDQFIDQNVRATKLS--TTGGFLQSGNTTFMIGIEEE---RVPEVLEIIKKAS 69 (114)
T ss_dssp EH-HHHHHHHHHHHHTTCCEEEEE--EEETTTTEEEEEEEEEEEGG---GHHHHHHHHHHHH
T ss_pred CH-HHHHHHHHHHHHCCCCEEEEE--EeccccccCCEEEEEEEcHH---HHHHHHHHHHHHc
Confidence 45 679999999999999985444 4444 32245665566553 3677777777654
No 64
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=26.49 E-value=67 Score=23.42 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 038298 133 LEGTIKHLKELQERGKKLVEHTK 155 (259)
Q Consensus 133 L~~ai~YIk~Lq~~v~~L~~~~~ 155 (259)
+..||+-|.-||.++++|+++..
T Consensus 15 Iq~avdtI~lLqmEieELKekN~ 37 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNN 37 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999988654
No 65
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=26.32 E-value=3.7e+02 Score=24.48 Aligned_cols=39 Identities=5% Similarity=0.102 Sum_probs=31.9
Q ss_pred EEEeCCeEEEEEE-ecCCCCCHHHHHHHHHHhCCCeEEEEE
Q 038298 177 VRVSDNNVLIRIH-CEKQNIGFISNIVSEIEKLHLVVINSR 216 (259)
Q Consensus 177 V~~~~~~v~I~I~-c~~~~~gll~~Il~aLe~lgL~Vv~as 216 (259)
+....+.+.|.|. .+..+ |.+.+|++.|.+.|+.|..-.
T Consensus 258 i~~~~~~~~i~v~~~~~~~-g~~~~If~~La~~~I~vd~I~ 297 (421)
T 3ab4_A 258 VATDKSEAKVTVLGISDKP-GEAAKVFRALADAEINIDMVL 297 (421)
T ss_dssp EEEECSEEEEEEEEEESST-THHHHHHHHHHHTTCCCEEEE
T ss_pred EEeeCCEEEEEEeccCCcc-cHHHHHHHHHHHcCCcEEEEE
Confidence 4556777888887 57778 999999999999999886554
No 66
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=25.64 E-value=2.3e+02 Score=26.51 Aligned_cols=68 Identities=16% Similarity=0.245 Sum_probs=43.3
Q ss_pred EEEeCCeEEEEEEec---CCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHHH
Q 038298 177 VRVSDNNVLIRIHCE---KQNIGFISNIVSEIEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLALS 253 (259)
Q Consensus 177 V~~~~~~v~I~I~c~---~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~ 253 (259)
|.+.++-..|.|... ..+ |...+++++|.+.|+.|.-.+- |.+-+++++...-.+ .+..++.|+++|.
T Consensus 368 v~v~~~vA~VSvVG~gM~~~~-Gvaarif~aLa~~~InI~mIsq---gtSei~Is~vV~~~d-----~~~Av~aLH~~ff 438 (446)
T 3tvi_A 368 IEIHPNMALVATVGTGMAKTK-GIANKIFTALSKENVNIRMIDQ---GSSEINVIVGVETVD-----FEKAVKSIYNAFN 438 (446)
T ss_dssp EEEEEEEEEEEEECGGGSSCT-THHHHHHHHHHHTTCCEEEEEE---CSCTTEEEEEEEGGG-----HHHHHHHHHHHHC
T ss_pred EEEeCCeEEEEEECCCccCCh-hHHHHHHHHHHHCCCCEEEEEe---cCCCceEEEEEcHHH-----HHHHHHHHHHHHh
Confidence 444455567777654 467 9999999999999999866553 222223334444332 4566777777764
No 67
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=25.59 E-value=51 Score=21.95 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 038298 138 KHLKELQERGKKLVEHTK 155 (259)
Q Consensus 138 ~YIk~Lq~~v~~L~~~~~ 155 (259)
.|+.+|+.+|..|+.+..
T Consensus 22 ~~~~~LE~~v~~L~~eN~ 39 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNK 39 (55)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 688888888888877653
No 68
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=24.95 E-value=36 Score=23.50 Aligned_cols=20 Identities=35% Similarity=0.403 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 038298 137 IKHLKELQERGKKLVEHTKR 156 (259)
Q Consensus 137 i~YIk~Lq~~v~~L~~~~~~ 156 (259)
-.||..|+.+|+.||..+..
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~ 76 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999987654
No 69
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=24.42 E-value=56 Score=23.05 Aligned_cols=16 Identities=38% Similarity=0.416 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 038298 138 KHLKELQERGKKLVEH 153 (259)
Q Consensus 138 ~YIk~Lq~~v~~L~~~ 153 (259)
.||++|+.+|..|+..
T Consensus 29 ~~i~~LE~~v~~le~~ 44 (70)
T 1gd2_E 29 DHLKALETQVVTLKEL 44 (70)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5777777777777654
No 70
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.26 E-value=1.6e+02 Score=21.61 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=29.1
Q ss_pred CCeEEEEEEec-----CCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEE
Q 038298 181 DNNVLIRIHCE-----KQNIGFISNIVSEIEKLHLVVINSRTIPFGNYAL 225 (259)
Q Consensus 181 ~~~v~I~I~c~-----~~~~gll~~Il~aLe~lgL~Vv~asvs~~~~~~l 225 (259)
+..++|.++-. .-+..++..|++.|...| +|+.+.+.. |+.+
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G-~Vi~vr~~~--d~~f 53 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFG-EVILIRFVE--DKMW 53 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTC-CEEEEEECS--SSEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCC-CeEEEEEec--CCEE
Confidence 45677877432 112258899999999999 888888653 5533
No 71
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=23.72 E-value=1.3e+02 Score=22.51 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 038298 133 LEGTIKHLKELQERGKKLVEHT 154 (259)
Q Consensus 133 L~~ai~YIk~Lq~~v~~L~~~~ 154 (259)
.+.|=+||..|.++++-|++..
T Consensus 65 ~e~a~e~vp~L~~~i~vle~~~ 86 (94)
T 3fx7_A 65 DEAAQEQIAWLKERIRVLEEDY 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHhHHHHHHHHHhHHHH
Confidence 5688899999999999999864
No 72
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=23.36 E-value=67 Score=22.83 Aligned_cols=22 Identities=14% Similarity=0.005 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhcC
Q 038298 137 IKHLKELQERGKKLVEHTKRKA 158 (259)
Q Consensus 137 i~YIk~Lq~~v~~L~~~~~~~~ 158 (259)
-.||..|+.+++.|+..+....
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~ 68 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYG 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3599999999999999887654
No 73
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=23.03 E-value=1.2e+02 Score=24.33 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccccCCCCCceEEEEeCCeEEEEEEec
Q 038298 133 LEGTIKHLKELQERGKKLVEHTKRKAPESVVSVKRSQQTLPDIVVRVSDNNVLIRIHCE 191 (259)
Q Consensus 133 L~~ai~YIk~Lq~~v~~L~~~~~~~~~~s~~~~k~~~~~~p~VeV~~~~~~v~I~I~c~ 191 (259)
+.+..+-.+++|++.++++++++....+... .---|+|.+.|+.-++.|...
T Consensus 43 m~~mmkQAQkmQ~km~k~QeeL~~~eveg~s-------GgGlVkVtvnG~~ev~~I~Id 94 (143)
T 1ybx_A 43 INNLVKQAQKMQRDMERVQEELKEKTVEASA-------GGGAVTVVATGRKDIKEITIK 94 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCEEEEEE-------TTTTEEEEEETTCCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCEEEEEE-------CCCEEEEEEecCceEEEEEEC
Confidence 4566677788999999999998765432110 111467777776655555443
No 74
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=21.34 E-value=2.4e+02 Score=20.48 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhCC--CeEEEEEEEEeCCeEEEEEEEEEecCceec-CHHHHHHHHHHHHHHH
Q 038298 197 FISNIVSEIEKLH--LVVINSRTIPFGNYALDITVVAQMEVEFCL-TVKELVKNLRLALSKF 255 (259)
Q Consensus 197 ll~~Il~aLe~lg--L~Vv~asvs~~~~~~l~~tI~aq~~~~~~~-t~~dl~~~L~~al~~~ 255 (259)
.+.+|.+.|.+.. ..|.+..+-..|...+ ++++..+++...+ .+.++...|+.+|.+-
T Consensus 11 ~~~~I~~~l~~~~gV~~vh~lr~r~~G~~~~-v~~hI~v~~~~sv~eah~i~~~ie~~L~~~ 71 (107)
T 2zzt_A 11 MYDDIFAVLERFPNVHNPHRVRIRRVGTKYF-IEMDIEVDGKMSVKDAHELTVKIRKEMLKR 71 (107)
T ss_dssp HHHHHHHHHTTCSSCEEEEEEEEECSCC-CE-EEEEEEECTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCccccEEEEEEEECCcEE-EEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 4567777777663 5566666666676654 7888888765321 2346778888877654
No 75
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=21.07 E-value=2.2e+02 Score=19.81 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhC----CCeEEEEEEEEeCCeEEEEEEEEEecCceec-CHHHHHHHHHHHHHHH
Q 038298 197 FISNIVSEIEKL----HLVVINSRTIPFGNYALDITVVAQMEVEFCL-TVKELVKNLRLALSKF 255 (259)
Q Consensus 197 ll~~Il~aLe~l----gL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~-t~~dl~~~L~~al~~~ 255 (259)
.+..|.+.|.+. -.+|.+..+-..|...+ ++++..+++...+ ...++...++..|.+-
T Consensus 11 ~~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~-v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~ 73 (94)
T 3byp_A 11 EVERIRAFLQERIRGRALEVHDLKTRRAGPRSF-LEFHLVVRGDTPVEEAHRLCDELERALAQA 73 (94)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEE-EEEEEEECTTCBHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceeeeeEEEEEECCcEE-EEEEEEECCCCcHHHHHHHHHHHHHHHHHH
Confidence 455666666654 46787777777787754 7899999765332 2356777777777653
No 76
>3mgj_A Uncharacterized protein MJ1480; saccharop_DH_N domain, NESG, structural genomics, PSI-2, protein structure initiative; 2.70A {Methanocaldococcus jannaschii}
Probab=20.47 E-value=3e+02 Score=21.27 Aligned_cols=28 Identities=7% Similarity=-0.006 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHhCC--CeEEEEEEEEeCCe
Q 038298 196 GFISNIVSEIEKLH--LVVINSRTIPFGNY 223 (259)
Q Consensus 196 gll~~Il~aLe~lg--L~Vv~asvs~~~~~ 223 (259)
|+|.++|..+.++| ++|.++++-...+.
T Consensus 16 gil~~~LD~I~d~GG~F~I~~f~vG~~k~d 45 (118)
T 3mgj_A 16 LILPKVFDKILDMGGDYKVLEFEIGKRKTD 45 (118)
T ss_dssp SHHHHHHHHHHHTTCEEEEEEEECCSSTTS
T ss_pred hhHHHHHHHHHhcCCCEEEEEEecCCCCCC
Confidence 89999999999997 77888888654443
No 77
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=20.43 E-value=2.8e+02 Score=22.16 Aligned_cols=48 Identities=13% Similarity=0.239 Sum_probs=30.9
Q ss_pred HHhCCCeEEEEEEEEeCCeEEEEEEEEEecCceecCHHHHHHHHHHHHHHHhh
Q 038298 205 IEKLHLVVINSRTIPFGNYALDITVVAQMEVEFCLTVKELVKNLRLALSKFIK 257 (259)
Q Consensus 205 Le~lgL~Vv~asvs~~~~~~l~~tI~aq~~~~~~~t~~dl~~~L~~al~~~~~ 257 (259)
+++ |++++...+..-+...+ +.| -++....++++| ...+..+|..++.
T Consensus 22 ~~~-g~eLvdve~~~~g~~~~-LrV--~ID~~~gi~ldd-C~~vSr~is~~LD 69 (164)
T 1ib8_A 22 IEA-PFELVDIEYGKIGSDMI-LSI--FVDKPEGITLND-TADLTEMISPVLD 69 (164)
T ss_dssp HCS-SSEEEEEEEEEETTEEE-EEE--EEECSSCCCHHH-HHHHHHHHGGGTT
T ss_pred HcC-CcEEEEEEEEecCCCcE-EEE--EEECCCCCCHHH-HHHHHHHHHHHhc
Confidence 356 99999999987665432 223 333344688888 5556666665553
Done!