BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038300
(401 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 133/233 (57%), Gaps = 29/233 (12%)
Query: 174 VLIKSFRELEGKYIDYLSD--LIKKKVVPVGPLV---QDPVEQTDH--------EKGATE 220
+L+ +F ELE I L + L K V PVGPLV + +QT+ +
Sbjct: 210 ILVNTFFELEPNAIKALQEPGLDKPPVYPVGPLVNIGKQEAKQTEESECLKWLDNQPLGS 269
Query: 221 IIHEYF-----LSKEEMEDIALGLELSGVNFIWVVRFPCG----------AKVKVDEELP 265
+++ F L+ E++ ++ALGL S F+WV+R P G ++ LP
Sbjct: 270 VLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLP 329
Query: 266 ESFLERTKERAMVIEGWAPQMKILGHPSIGGFVSHCGWSSVMESMRLGVPIIAMPMHVDQ 325
FLERTK+R VI WAPQ ++L HPS GGF++HCGW+S +ES+ G+P+IA P++ +Q
Sbjct: 330 PGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQ 389
Query: 326 PLNARLV-EDVGIGLEVRRNKCGRIQREEMARVIKEVVMEREGEKIKRKTREM 377
+NA L+ ED+ L R G ++REE+ARV+K ++ EG+ ++ K +E+
Sbjct: 390 KMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKEL 442
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 160/326 (49%), Gaps = 61/326 (18%)
Query: 94 LASSLNIPAVYFLVSSAATSAFMFHAIKKNSLGDANDDDEEFPSSSIFIHDYYMKSYFSN 153
+ + IP+ FL S+ + M ++K + + DD + H SN
Sbjct: 130 VGNEFGIPSYLFLTSNVGFLSLML-SLKNRQIEEVFDDSDR-------DHQLLNIPGISN 181
Query: 154 MVESPTTKRLLQCFE---------------RSCNIVLIKSFRELEGKYIDYLSDLIKK-- 196
V P+ CF R +++ +F +LE ID L D +K
Sbjct: 182 QV--PSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIP 239
Query: 197 KVVPVGPLVQ-----DP-VEQTDH--------EKGATEIIHEYFLS------KEEMEDIA 236
+ VGPL+ +P ++Q H E+ ++ F S ++ +IA
Sbjct: 240 PIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIA 299
Query: 237 LGLELSGVNFIWVVRFPCGAKVKVDEELPESFLERTK-ERAMVIEGWAPQMKILGHPSIG 295
LGL+ SGV F+W A+ KV PE FLE + E +I GWAPQ+++L H +IG
Sbjct: 300 LGLKHSGVRFLW----SNSAEKKV---FPEGFLEWMELEGKGMICGWAPQVEVLAHKAIG 352
Query: 296 GFVSHCGWSSVMESMRLGVPIIAMPMHVDQPLNA-RLVEDVGIGLEVR---RNKCGRIQR 351
GFVSHCGW+S++ESM GVPI+ P++ +Q LNA RLV++ G+GL +R R +
Sbjct: 353 GFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAA 412
Query: 352 EEMARVIKEVVMEREGEKIKRKTREM 377
EE+ + +K+ +M+++ + +K +EM
Sbjct: 413 EEIEKGLKD-LMDKD-SIVHKKVQEM 436
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 118/234 (50%), Gaps = 40/234 (17%)
Query: 174 VLIKSFRELEGKYIDYLSDLIKKKVVPVGPL----VQDP-VEQTD--------------- 213
+L+ +F ELE I+ LS I + P+GPL Q P + Q D
Sbjct: 229 ILLNTFNELESDVINALSSTIPS-IYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLD 287
Query: 214 --HEKGATEIIHEYF-----LSKEEMEDIALGLELSGVNFIWVVR--FPCGAKVKVDEEL 264
K +++ F ++ E++ + A GL +F+W++R G V E
Sbjct: 288 WLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEF 347
Query: 265 PESFLERTKERAMVIEGWAPQMKILGHPSIGGFVSHCGWSSVMESMRLGVPIIAMPMHVD 324
+R +I W PQ K+L HPSIGGF++HCGW+S ES+ GVP++ P D
Sbjct: 348 TNEIADRG-----LIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFAD 402
Query: 325 QPLNARLV-EDVGIGLEVRRNKCGRIQREEMARVIKEVVMEREGEKIKRKTREM 377
QP + R + + IG+E+ N ++REE+A++I EV+ +G+K+K+K E+
Sbjct: 403 QPTDCRFICNEWEIGMEIDTN----VKREELAKLINEVIAGDKGKKMKQKAMEL 452
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 160/326 (49%), Gaps = 61/326 (18%)
Query: 94 LASSLNIPAVYFLVSSAATSAFMFHAIKKNSLGDANDDDEEFPSSSIFIHDYYMKSYFSN 153
+ + IP+ FL S+ + M ++K + + DD + H SN
Sbjct: 130 VGNEFGIPSYLFLTSNVGFLSLML-SLKNRQIEEVFDDSDR-------DHQLLNIPGISN 181
Query: 154 MVESPTTKRLLQCFE---------------RSCNIVLIKSFRELEGKYIDYLSDLIKK-- 196
V P+ CF R +++ +F +LE ID L D +K
Sbjct: 182 QV--PSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIP 239
Query: 197 KVVPVGPLVQ-----DP-VEQTDH--------EKGATEIIHEYFLS------KEEMEDIA 236
+ VGPL+ +P ++Q H E+ ++ F S ++ +IA
Sbjct: 240 PIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIA 299
Query: 237 LGLELSGVNFIWVVRFPCGAKVKVDEELPESFLERTK-ERAMVIEGWAPQMKILGHPSIG 295
LGL+ SGV F+W A+ KV PE FLE + E +I GWAPQ+++L H +IG
Sbjct: 300 LGLKHSGVRFLW----SNSAEKKV---FPEGFLEWMELEGKGMICGWAPQVEVLAHKAIG 352
Query: 296 GFVSHCGWSSVMESMRLGVPIIAMPMHVDQPLNA-RLVEDVGIGLEVR---RNKCGRIQR 351
GFVSHCGW+S++ESM GVPI+ P++ +Q LNA RLV++ G+GL +R R +
Sbjct: 353 GFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAA 412
Query: 352 EEMARVIKEVVMEREGEKIKRKTREM 377
EE+ + +K+ +M+++ + +K +EM
Sbjct: 413 EEIEKGLKD-LMDKD-SIVHKKVQEM 436
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 107 bits (268), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 131/250 (52%), Gaps = 39/250 (15%)
Query: 147 MKSYFSNMVESPTTKRLLQCFERSCNIVLIKSFRELEGKYIDYLSDLIKKKV---VPVGP 203
+ S FS M+ R+ Q ++ V I SF EL+ D L++ +K K+ + +GP
Sbjct: 196 LNSLFSRMLH-----RMGQVLPKA-TAVFINSFEELD----DSLTNDLKSKLKTYLNIGP 245
Query: 204 --LVQDP--VEQTD------HEKGATEIIHEYF---LSKEEMEDIAL--GLELSGVNFIW 248
L+ P V T E+ T +++ F + E +AL LE S V FIW
Sbjct: 246 FNLITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIW 305
Query: 249 VVRFPCGAKVKVDEELPESFLERTKERAMVIEGWAPQMKILGHPSIGGFVSHCGWSSVME 308
+R K +V LPE FLE+T+ MV+ WAPQ ++L H ++G FV+HCGW+S+ E
Sbjct: 306 SLR----DKARV--HLPEGFLEKTRGYGMVVP-WAPQAEVLAHEAVGAFVTHCGWNSLWE 358
Query: 309 SMRLGVPIIAMPMHVDQPLNARLVEDVGIGLEVR-RNKCGRIQREEMARVIKEVVMEREG 367
S+ GVP+I P DQ LN R+VEDV LE+ R + G + + +++ + +G
Sbjct: 359 SVAGGVPLICRPFFGDQRLNGRMVEDV---LEIGVRIEGGVFTKSGLMSCFDQILSQEKG 415
Query: 368 EKIKRKTREM 377
+K++ R +
Sbjct: 416 KKLRENLRAL 425
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 108/221 (48%), Gaps = 32/221 (14%)
Query: 171 CNIVLIKSFRELEGKYIDYLSDLIKKKVVPVGPL-VQDPVEQTDHEKGATEIIHEYFLSK 229
N V I SF + + L+ K ++ VGP + P + E G E + ++ S
Sbjct: 216 ANAVAINSFATIHPLIENELNSKFKL-LLNVGPFNLTTPQRKVSDEHGCLEWLDQHENSS 274
Query: 230 --------------EEMEDIALGLELSGVNFIWVVRFPCGAKVKVDEELPESFLERTKER 275
E+ +A LE G FIW R E+LP+ FLERTK +
Sbjct: 275 VVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRG------DPKEKLPKGFLERTKTK 328
Query: 276 AMVIEGWAPQMKILGHPSIGGFVSHCGWSSVMESMRLGVPIIAMPMHVDQPLNARLVE-- 333
++ WAPQ++IL H S+G F++H GW+SV+E + GVP+I+ P DQ LN L E
Sbjct: 329 GKIV-AWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESV 387
Query: 334 -DVGIGLEVRRNKCGRIQREEMARVIKEVVMEREGEKIKRK 373
++G+G++ G + +E + + + E+ M E I R+
Sbjct: 388 LEIGVGVD-----NGVLTKESIKKAL-ELTMSSEKGGIMRQ 422
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 282 WAPQMKILGHPSIGGFVSHCGWSSVMESMRLGVPIIAMPMHVDQPLNARLVEDVGIGLEV 341
W PQ +LGHP F++H G + + E++ G+P + +P+ DQP N + G + V
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIAHXKARGAAVRV 134
Query: 342 RRNKCGRIQ-REEMARVIKEVVMEREGEKIKR 372
N + RVI + + K+ R
Sbjct: 135 DFNTXSSTDLLNALKRVINDPSYKENVXKLSR 166
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 119/300 (39%), Gaps = 45/300 (15%)
Query: 68 PSFFNILKNLSPDLLIYDLIQPWAPALASSLNIPAVYFLVSSAATSAF------------ 115
P + + PDL++YD+ AP L +IP V + A F
Sbjct: 99 PQLEDAYADDRPDLIVYDIASWPAPVLGRKWDIPFVQLSPTFVAYEGFEEDVPAVQDPTA 158
Query: 116 --MFHAIKKNSLGDANDDDEEFPSSSIFIHDYYMKSYF--SNMVESPTTKRLLQCFERSC 171
A GDA + E + + + S F + V++P T+ L+ C
Sbjct: 159 DRGEEAAAPAGTGDAEEGAE---AEDGLVRFFTRLSAFLEEHGVDTPATEFLIA--PNRC 213
Query: 172 NIVLIKSFRELEGKYIDYLSDLIKKKVVPVGPLVQDPVEQTDHEK-GATEIIHEYFLSKE 230
+ L ++F +++G D + VGP D Q E G + L
Sbjct: 214 IVALPRTF-QIKG-------DTVGDNYTFVGPTYGDRSHQGTWEGPGDGRPVLLIALGSA 265
Query: 231 EMEDIALGLE-LSGVNFI-WVVRFPCGAKVKVDE--ELPESFLERTKERAMVIEGWAPQM 286
+ + LS V+ + W V G V + E+P + + + W PQ+
Sbjct: 266 FTDHLDFYRTCLSAVDGLDWHVVLSVGRFVDPADLGEVPPN---------VEVHQWVPQL 316
Query: 287 KILGHPSIGGFVSHCGWSSVMESMRLGVPIIAMPMHVDQPLNARLVEDVGIGLEVRRNKC 346
IL S F++H G S ME++ VP++A+P +Q +NA + ++G+G + R++
Sbjct: 317 DILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQV 374
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 23/142 (16%)
Query: 248 WVVRFPCGAKVKVDE--ELPESFLERTKERAMVIEGWAPQMKILGHPSIGGFVSHCGWSS 305
W + G KV E ELP++ + + W PQ+ IL + FV+H G
Sbjct: 263 WHLVLQIGRKVTPAELGELPDN---------VEVHDWVPQLAILRQADL--FVTHAGAGG 311
Query: 306 VMESMRLGVPIIAMPMHVDQPLNARLVEDVGIGLE----------VRRNKCGRIQREEMA 355
E + P+IA+P VDQ NA +++ +G+ + +R + E+A
Sbjct: 312 SQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRETALALVDDPEVA 371
Query: 356 RVIKEVVMEREGEKIKRKTREM 377
R ++ + E E R+ ++
Sbjct: 372 RRLRRIQAEMAQEGGTRRAADL 393
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 282 WAPQMKILGHPSIGGFVSHCGWSSVMESMRLGVPIIAMPMHVDQPLNARLVEDVGIG 338
W P +K+L ++ V+H G ++ E++ G P++ +P D AR V+ +G+G
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQLGLG 358
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 282 WAPQMKILGHPSIGGFVSHCGWSSVMESMRLGVPIIAMPMHVDQPLNARLVEDVGIG 338
W P +K+L ++ V+H G ++ E++ G P++ +P D AR V+ +G+G
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQLGLG 358
>pdb|3H4I|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products
pdb|3H4T|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products - Gtfah1 In Complex With Udp-2f-Glc
Length = 404
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 294 IGGFVSHCGWSSVMESMRLGVPIIAMPMHVDQPLNARLVEDVGIGL 339
+ V H G + R G P + +P DQP A V D+G+G+
Sbjct: 285 VAAVVHHGGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGV 330
>pdb|1IIR|A Chain A, Crystal Structure Of Udp-Glucosyltransferase Gtfb
Length = 415
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 294 IGGFVSHCGWSSVMESMRLGVPIIAMPMHVDQPLNARLVEDVGIGL 339
+ + H G + + R G P I +P DQP A V ++G+G+
Sbjct: 302 VAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGV 347
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/81 (19%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 297 FVSHCGWSSVMESMRLGVPIIAMPMHVDQPLNARLVEDVGIGLEVRRNKCGRIQREEMAR 356
+ H G +++ ++ GVP +P Q N ++ +GIG + + G + E+ R
Sbjct: 308 IIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDA---EAGSLGAEQCRR 364
Query: 357 VIKEVVMEREGEKIKRKTREM 377
++ + + +++++ EM
Sbjct: 365 LLDDAGLREAALRVRQEMSEM 385
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/81 (19%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 297 FVSHCGWSSVMESMRLGVPIIAMPMHVDQPLNARLVEDVGIGLEVRRNKCGRIQREEMAR 356
+ H G +++ ++ GVP +P Q N ++ +GIG + + G + E+ R
Sbjct: 308 IIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDA---EAGSLGAEQCRR 364
Query: 357 VIKEVVMEREGEKIKRKTREM 377
++ + + +++++ EM
Sbjct: 365 LLDDAGLREAALRVRQEMSEM 385
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 279 IEGWAPQMKILGHPSIGGFVSHCGWSSVMESMRLGVPIIAMPMHVD 324
+E W PQ +L H + V H G + + ++ GVP ++ P D
Sbjct: 296 LESWVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFPWAGD 339
>pdb|2OOQ|A Chain A, Crystal Structure Of The Human Receptor Phosphatase Ptprt
pdb|2OOQ|B Chain B, Crystal Structure Of The Human Receptor Phosphatase Ptprt
Length = 286
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 281 GWAPQMKILGHPSIGGFVSHCGWSSVMESMRLGVPIIAMPMHVDQPLNARLVEDVGIGLE 340
G+ Q+K L P G V HC + R G IA+ +D N +V+ E
Sbjct: 199 GFVRQVKFLNPPEAGPIVVHCS----AGAGRTGC-FIAIDTMLDMAENEGVVDIFNCVRE 253
Query: 341 VRRNKCGRIQREEMARVIKEVVME 364
+R + +Q EE + + ++E
Sbjct: 254 LRAQRVNLVQTEEQYVFVHDAILE 277
>pdb|2XCI|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCU|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
Length = 374
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%)
Query: 294 IGGFVSHCGWSSVMESMRLGVPIIAMPMHVDQPLNARLVEDVGIGLEVRRNKCGRIQREE 353
+GG + G +++E G+P+I P +E G G EV+ + E
Sbjct: 283 VGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAGFEVKNETELVTKLTE 342
Query: 354 MARVIKEVVMEREGEKIK 371
+ V KE+ +E + +IK
Sbjct: 343 LLSVKKEIKVEEKSREIK 360
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 292 PSIGGFVSHCGWSSVMESMRLGVPIIAMPMHVDQPLNARLVEDVGIGLEVRRNKCG 347
P+ V H G + + + GVP +++P+ + +ARL+ G G+EV + G
Sbjct: 298 PACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAG 353
>pdb|1RRV|A Chain A, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase
Gtfd As A Complex With Tdp And The Natural Substrate,
Desvancosaminyl Vancomycin.
pdb|1RRV|B Chain B, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase
Gtfd As A Complex With Tdp And The Natural Substrate,
Desvancosaminyl Vancomycin
Length = 416
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 294 IGGFVSHCGWSSVMESMRLGVPIIAMPMHVDQPLNARLVEDVGIGL 339
+ + H + + R GVP + +P + DQP A V +GIG+
Sbjct: 303 VAAVIHHGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGV 348
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 292 PSIGGFVSHCGWSSVMESMRLGVPIIAMPMHVDQPLNARLVEDVGIGLEVRRNKCG 347
P+ V H G + + + GVP +++P+ + +ARL+ G G+EV + G
Sbjct: 299 PACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAG 354
>pdb|4GNS|B Chain B, Crystal Structure Of The Chs5-Chs6 Exomer Cargo Adaptor
Complex
Length = 754
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 24/96 (25%)
Query: 157 SPTTKRLLQCFER----SCNIVLIKSFRELEGKYIDYLSDLIKKKVVPVGPLVQDPVEQT 212
SP+ ++ Q R SC ++ + F E + DLI V +GP+
Sbjct: 25 SPSVQKGYQFLNRDIFKSCPRIMERQFGECLHNRTHLIKDLISSGNVGLGPI-------- 76
Query: 213 DHEKGATEIIHEYFLSKEEMEDIA-----LGLELSG 243
EI+H +L+K E E+ G+E+SG
Sbjct: 77 -------EIVHMSYLNKHEKEEFGEYFYVTGIEVSG 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,768,492
Number of Sequences: 62578
Number of extensions: 424387
Number of successful extensions: 932
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 899
Number of HSP's gapped (non-prelim): 35
length of query: 401
length of database: 14,973,337
effective HSP length: 101
effective length of query: 300
effective length of database: 8,652,959
effective search space: 2595887700
effective search space used: 2595887700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)