BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038303
         (461 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|296083914|emb|CBI24302.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 295/455 (64%), Positives = 360/455 (79%)

Query: 6   SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAH 65
           +S+NH+TFT AL A S  H   K LEIHA  I+ GH  DIFIQN+LLH YV   +   A 
Sbjct: 72  TSHNHFTFTHALIASSSLHALHKTLEIHARAIKSGHYSDIFIQNTLLHSYVVENNFVFAK 131

Query: 66  QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHK 125
            +F S+  PDVVSWT+IISGLSKCGF +EAI  F  +DVKPN +TLVSV+SAC  L + +
Sbjct: 132 SVFKSISSPDVVSWTSIISGLSKCGFDEEAIGEFLSMDVKPNTSTLVSVVSACCGLRAVR 191

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GKAIH +SLR+++ +NIILDNA+LDFY++CG L S  YLF+KM +R+V+SWTTM+GG A
Sbjct: 192 FGKAIHGYSLRSMDGDNIILDNALLDFYVKCGYLVSAKYLFMKMFRRDVISWTTMVGGLA 251

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G C+EAV VFQ M K  EA PNE TLVNVL+ACSS+SAL+ G++VHSYISTRYDL V 
Sbjct: 252 QGGLCEEAVEVFQAMVKGGEAVPNEVTLVNVLTACSSLSALNLGRWVHSYISTRYDLVVD 311

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             VGNA+INMY KC D+ +A++VFN L +KD ISWST+I G+AMNG G  ALQ FSLM++
Sbjct: 312 GNVGNALINMYAKCSDMYMAVRVFNELTHKDMISWSTIIGGMAMNGHGMHALQFFSLMLV 371

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
           + V PDDVTFI L+SACSH GLV+QGLI FKAM+ VY I PQMQHYAC+VDMYGRAGLLE
Sbjct: 372 HGVSPDDVTFIGLLSACSHAGLVEQGLIFFKAMNNVYGIAPQMQHYACMVDMYGRAGLLE 431

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EAEAFIR MP+EAE  +WGALLNAC+IH N++MF RI Q L N KGVS+GT AL+SNT+A
Sbjct: 432 EAEAFIRGMPMEAEGPIWGALLNACKIHGNEKMFGRIDQSLRNAKGVSIGTLALLSNTYA 491

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            ++RW+D NK+RD +R MGLKK +GCSWIEV+  I
Sbjct: 492 SSNRWDDANKVRDMMRDMGLKKMSGCSWIEVDAMI 526


>gi|147788829|emb|CAN73311.1| hypothetical protein VITISV_018159 [Vitis vinifera]
          Length = 725

 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 293/455 (64%), Positives = 358/455 (78%)

Query: 6   SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAH 65
           +S+NH+TFT AL A S  H   K LEIHA  I+ GH  DIFIQN+LLH YV   +   A 
Sbjct: 6   TSHNHFTFTHALIASSSLHALHKTLEIHARAIKSGHYSDIFIQNTLLHSYVVENNXVFAK 65

Query: 66  QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHK 125
            +F S+  PDVVSWT+IISGLSKCGF +EAI  F  +DVKPN +TLVSV+SAC  L + +
Sbjct: 66  SVFKSISSPDVVSWTSIISGLSKCGFDEEAIGEFLSMDVKPNTSTLVSVVSACCGLRAVR 125

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GKAIH +SLR+++ +NIILDNA+LDFY++CG L S  YLF+KM +R+V+SWTTM+GG A
Sbjct: 126 FGKAIHGYSLRSMDGDNIILDNALLDFYVKCGYLVSAKYLFMKMFRRDVISWTTMVGGLA 185

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G C+EAV VFQ M K  EA PNE TLVNVL+ACSS+SAL+ G++VHSYIS RYDL V 
Sbjct: 186 QGGLCEEAVEVFQAMVKGGEAVPNEVTLVNVLTACSSLSALNLGRWVHSYISIRYDLVVD 245

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             VGNA+INMY KC D+ +A++VFN L +KD ISWST+I G+AMNG G  ALQ FSLM++
Sbjct: 246 GNVGNALINMYAKCSDMYMAVRVFNELTHKDMISWSTIIGGMAMNGHGMHALQFFSLMLV 305

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
           + V PDDVTFI L+SACSH GLV+QGLI FKAM+ VY I PQMQHYAC+VDMYGRAGLLE
Sbjct: 306 HGVSPDDVTFIGLLSACSHAGLVEQGLIFFKAMNNVYGIAPQMQHYACMVDMYGRAGLLE 365

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EAEAFIR MP+EAE  +WGALLNAC+IH N++MF  I Q L N KGVS+GT AL+SNT+A
Sbjct: 366 EAEAFIRGMPMEAEGPIWGALLNACKIHGNEKMFGXIBQSLRNAKGVSIGTLALLSNTYA 425

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            ++RW+D NK+RD +R MGLKK +GCSWIEV+  I
Sbjct: 426 SSNRWDDANKVRDMMRDMGLKKMSGCSWIEVDAMI 460



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 153/358 (42%), Gaps = 47/358 (13%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHV-IEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           N  T    L ACS          +H+++ I Y  + D  + N+L++ Y    D++ A ++
Sbjct: 209 NEVTLVNVLTACSSLSALNLGRWVHSYISIRYDLVVDGNVGNALINMYAKCSDMYMAVRV 268

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSH 124
           FN +   D++SW+TII G++  G    A+  F  +    V P+  T + +LSACS     
Sbjct: 269 FNELTHKDMISWSTIIGGMAMNGHGMHALQFFSLMLVHGVSPDDVTFIGLLSACS----- 323

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
                 HA     L E  +I   A+ + Y     +A             +  +  M+  Y
Sbjct: 324 ------HA----GLVEQGLIFFKAMNNVY----GIAP-----------QMQHYACMVDMY 358

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
              G  +EA +  + M    E  P    L+N   AC           +   +     +S+
Sbjct: 359 GRAGLLEEAEAFIRGMPMEAEG-PIWGALLN---ACKIHGNEKMFGXIBQSLRNAKGVSI 414

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD----KISWSTVISGLAMNGCGRQALQLF 300
             L    + N Y        A +V +M+  +D    K+S  + I   AM      A + F
Sbjct: 415 GTLA--LLSNTYASSNRWDDANKVRDMM--RDMGLKKMSGCSWIEVDAMINRYDGANRSF 470

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMY 358
           +    + V PD  TFI L SA SH  LV+QG +   A +    I+P++QHYACVVD+Y
Sbjct: 471 AFAGKSRVLPDIATFIGLFSASSHKELVEQGFVFLGATND-DGIMPKIQHYACVVDIY 527


>gi|449442521|ref|XP_004139030.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like isoform 1 [Cucumis sativus]
 gi|449442523|ref|XP_004139031.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like isoform 2 [Cucumis sativus]
          Length = 517

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 290/461 (62%), Positives = 366/461 (79%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML  PSS+NH+TFT ALKAC   H  QK LEIHAH+I+ GHL DIFIQNSLLHFY+   D
Sbjct: 54  MLRYPSSHNHFTFTYALKACCFLHQTQKGLEIHAHLIKSGHLSDIFIQNSLLHFYILDGD 113

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSS 120
           + SA  IF+S+  PDVVSWT+IISGLSK GF KEA+  F  ++V+PN+ TLV+ LSACSS
Sbjct: 114 VSSASLIFDSIPDPDVVSWTSIISGLSKLGFEKEALSKFLSMNVRPNSTTLVTALSACSS 173

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           L   KLGKAIH   +R LNE N+IL+NA+LDFY+RC  L S   LF KMPKR+VVSWTTM
Sbjct: 174 LRCLKLGKAIHGLRMRTLNEENVILENALLDFYVRCAYLRSAENLFEKMPKRDVVSWTTM 233

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           IGGYA+ G C+EAV VFQ M    EA PNEATLVNVLSACSSISAL  G++VHSYI++R+
Sbjct: 234 IGGYAQSGLCEEAVRVFQNMVHVGEAIPNEATLVNVLSACSSISALHLGQWVHSYINSRH 293

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
           D+ +   VGNA+INMYVKCG++ +AI +F  + +KD +SWST+ISGLAMNG G+QA  LF
Sbjct: 294 DVIIDGNVGNALINMYVKCGNMEMAILIFKAIEHKDIVSWSTIISGLAMNGLGKQAFVLF 353

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
           SLM+++ V PDD+TF+ L+SACSHGGL++QG+++F+AM  VY I PQM+HYAC+VDMYG+
Sbjct: 354 SLMLVHGVSPDDITFLGLLSACSHGGLINQGMMVFEAMKDVYNISPQMRHYACMVDMYGK 413

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           AGLL+EAEAFI+EMP+EAE  VWGALL+AC++H N++ ++++R+ L+  KGV+VGTFAL+
Sbjct: 414 AGLLDEAEAFIKEMPMEAEGPVWGALLHACQLHGNEKKYEKVREWLLGSKGVTVGTFALL 473

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           SNT+A  DRW D N +R  +R  GLKK  G SWIE+  S +
Sbjct: 474 SNTYACCDRWNDANDVRVAMRSRGLKKMAGRSWIEMVDSTY 514


>gi|449476231|ref|XP_004154679.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like, partial [Cucumis sativus]
          Length = 472

 Score =  606 bits (1562), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 286/454 (62%), Positives = 360/454 (79%)

Query: 3   SCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIF 62
           S P S+NH+TFT ALKAC   H  QK LEIHAH+I+ GHL DIFIQNSLLHFY+   D+ 
Sbjct: 11  SLPISHNHFTFTYALKACCFLHQTQKGLEIHAHLIKSGHLSDIFIQNSLLHFYILDGDVS 70

Query: 63  SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLV 122
           SA  IF+S+  PDVVSWT+IISGLSK GF KEA+  F  ++V+PN+ TLV+ LS CSSL 
Sbjct: 71  SASLIFDSIPDPDVVSWTSIISGLSKLGFEKEALSKFLSMNVRPNSTTLVTALSTCSSLR 130

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
             KLGKAIH   +R LNE N+IL+NA+LDFY+RC  L S   LF KMPKR+VVSWTTMIG
Sbjct: 131 CLKLGKAIHGLRMRTLNEENVILENALLDFYVRCAYLRSAENLFEKMPKRDVVSWTTMIG 190

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
           GYA+ G C+EAV VFQ M    EA PNEATLVNVLSACSSISAL  G++VHSYI++R+D+
Sbjct: 191 GYAQSGLCEEAVRVFQNMVHVGEAIPNEATLVNVLSACSSISALHLGQWVHSYINSRHDV 250

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
            +   VGNA+INMYVKCG++ +AI +F    +KD +SWST+ISGLAMNG G+QA  LFSL
Sbjct: 251 IIDGNVGNALINMYVKCGNMEMAILIFKATEHKDIVSWSTIISGLAMNGLGKQAFVLFSL 310

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
           M+++ + PDDVTF+ L+SACSHGGL++QG+++F+AM  VY I PQM+HYAC+VDMYG+AG
Sbjct: 311 MLVHGISPDDVTFLGLLSACSHGGLINQGMMVFEAMKDVYNISPQMRHYACMVDMYGKAG 370

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSN 422
           LL+EAEAFI+EMP+EAE  VWGALL+AC++H N++ ++++R+ L+  KGV+VGTFAL+SN
Sbjct: 371 LLDEAEAFIKEMPMEAEGPVWGALLHACQLHGNEKKYEKVREWLLGSKGVTVGTFALLSN 430

Query: 423 TFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           T+A  DRW D N +R  +R  GLKK  G SWIE+
Sbjct: 431 TYACCDRWNDANDVRVAMRSRGLKKMAGRSWIEM 464


>gi|357446587|ref|XP_003593569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355482617|gb|AES63820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 528

 Score =  546 bits (1406), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 261/456 (57%), Positives = 339/456 (74%), Gaps = 2/456 (0%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           MLSC SS+NHYTFT ALKAC   H H K LEIHA +I+ GH+ D FI+N+LL+FY++  D
Sbjct: 49  MLSCSSSHNHYTFTHALKACCSYHAHAKGLEIHARLIKSGHIFDGFIKNTLLYFYLSSND 108

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSS 120
           + SA ++F S+  PDVVSWT++ISGLSKCGF  EAI+ F  I+VKPNA TLVS +SACSS
Sbjct: 109 VVSATRVFKSIPSPDVVSWTSLISGLSKCGFETEAIEAFSSINVKPNALTLVSAISACSS 168

Query: 121 LVSHKLGKAIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
           + + K GKAIHA+ L++L  + NI+  NA LD Y +CG  ++   +FVKM KR+V+SWTT
Sbjct: 169 IGAIKFGKAIHAYGLKSLMIDGNIVFYNAALDLYAKCGFFSNARNVFVKMSKRDVISWTT 228

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           ++  YA  G C EAV VF++M  + EAEPNE+T+V VLSAC+SI +LS G +VH YI  R
Sbjct: 229 LLMAYARGGQCGEAVEVFKQMIVSGEAEPNESTVVTVLSACASIGSLSLGCWVHDYIEKR 288

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
            DL V   +GNA++NMYVKCGD+ + ++VFNM+ +KD ISW TVI GLAMNG G+Q +Q+
Sbjct: 289 IDLDVDGNIGNALVNMYVKCGDMKMGLKVFNMVVHKDVISWGTVICGLAMNGYGKQVVQM 348

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
           FS M+++ V PDDVTFI L+SACSH GLV +G++ FKAM   Y IVPQM HY C+VDMYG
Sbjct: 349 FSHMLVHGVLPDDVTFIGLLSACSHVGLVSEGMMFFKAMRDSYGIVPQMSHYGCMVDMYG 408

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFAL 419
           RA L EEA AF++ MP+EAE  +W ALL AC+ H N+EM + IR   ++ K V VGT AL
Sbjct: 409 RASLFEEAVAFLKGMPVEAEGPIWSALLQACKTHGNEEMSEWIRGQ-IHDKNVGVGTLAL 467

Query: 420 MSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
           +SN +A ++RW+D N +R  +R  GLKK  G SW+E
Sbjct: 468 LSNIYASSERWDDANNVRKIMRGTGLKKVAGLSWVE 503


>gi|217074958|gb|ACJ85839.1| unknown [Medicago truncatula]
 gi|388521431|gb|AFK48777.1| unknown [Medicago truncatula]
          Length = 515

 Score =  543 bits (1398), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 260/456 (57%), Positives = 338/456 (74%), Gaps = 2/456 (0%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           MLSC SS+NHYTFT ALKAC   H H K LEIHA +I+ GH+ D FI+N+LL+FY++  D
Sbjct: 49  MLSCSSSHNHYTFTHALKACCSYHAHAKGLEIHARLIKSGHIFDGFIKNTLLYFYLSSND 108

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSS 120
           + SA ++F S+  PDVVSWT++ISGLSKCGF  EAI+ F  I+VKPNA TLVS +SACSS
Sbjct: 109 VVSATRVFKSIPSPDVVSWTSLISGLSKCGFETEAIEAFSSINVKPNALTLVSAISACSS 168

Query: 121 LVSHKLGKAIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
           + + K GKAIHA+ L++L  + NI+  NA LD Y +CG  ++   +FVKM KR+V+SWTT
Sbjct: 169 IGAIKFGKAIHAYGLKSLMIDGNIVFYNAALDLYAKCGFFSNARNVFVKMSKRDVISWTT 228

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           ++  YA  G C EAV VF++M  + EAEPNE+T+V VLSAC+SI +LS G +VH YI  R
Sbjct: 229 LLMAYARGGQCGEAVEVFKQMIVSGEAEPNESTVVTVLSACASIGSLSLGCWVHDYIEKR 288

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
            DL V   +GNA++NMYVKCGD+ + ++VFNM+ +KD ISW TVI GLAMN  G+Q +Q+
Sbjct: 289 IDLDVDGNIGNALVNMYVKCGDMKMGLKVFNMVVHKDVISWGTVICGLAMNEYGKQVVQM 348

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
           FS M+++ V PDDVTFI L+SACSH GLV +G++ FKAM   Y IVPQM HY C+VDMYG
Sbjct: 349 FSHMLVHGVLPDDVTFIGLLSACSHVGLVSEGMMFFKAMRDSYGIVPQMSHYGCMVDMYG 408

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFAL 419
           RA L EEA AF++ MP+EAE  +W ALL AC+ H N+EM + IR   ++ K V VGT AL
Sbjct: 409 RASLFEEAVAFLKGMPVEAEGPIWSALLQACKTHGNEEMSEWIRGQ-IHDKNVGVGTLAL 467

Query: 420 MSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
           +SN +A ++RW+D N +R  +R  GLKK  G SW+E
Sbjct: 468 LSNIYASSERWDDANNVRKIMRGTGLKKVAGLSWVE 503


>gi|356555244|ref|XP_003545944.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 521

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 257/462 (55%), Positives = 341/462 (73%), Gaps = 7/462 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           +LS P S+NHYTFT AL+AC   H   KALEIHAH+++ GH  D+F+QNSLLHFY+   D
Sbjct: 47  ILSHPFSHNHYTFTHALRACYSHHSRSKALEIHAHLVKSGHYLDLFLQNSLLHFYLAHND 106

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID-----VKPNANTLVSVL 115
           + SA  +F S+  PDVVSWT+++SGL+K GF  +A+  F  ++     V+PNA TLV+ L
Sbjct: 107 VVSASNLFRSIPSPDVVSWTSLVSGLAKSGFEAQALHHFTNMNAKPKIVRPNAATLVAAL 166

Query: 116 SACSSLVSHKLGKAIHAHSLRNL-NENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV 174
            ACSSL +  LGK+ HA+ LR L  + N+I DNA+L+ Y +CG+L +   LF K+  R+V
Sbjct: 167 CACSSLGALGLGKSAHAYGLRMLIFDGNVIFDNAVLELYAKCGALKNAQNLFDKVFARDV 226

Query: 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
           VSWTT++ GYA  G+C+EA +VF+ M    EAEPNEAT+V VLSA +SI ALS G++VHS
Sbjct: 227 VSWTTLLMGYARGGYCEEAFAVFKRMVLNAEAEPNEATVVTVLSASASIGALSLGQWVHS 286

Query: 235 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
           YI +RYDL V   + NA++NMYVKCGD+ + ++VF+M+ +KD ISW TVI GLAMNG  +
Sbjct: 287 YIDSRYDLVVDGNIENALLNMYVKCGDMQMGLRVFDMIVHKDAISWGTVICGLAMNGYEK 346

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
           + L+LFS M++  V PDDVTFI ++SACSH GLV++G++ FKAM   Y IVPQM+HY C+
Sbjct: 347 KTLELFSRMLVEVVEPDDVTFIGVLSACSHAGLVNEGVMFFKAMRDFYGIVPQMRHYGCM 406

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414
           VDMYGRAGLLEEAEAF+R MP+EAE  +WGALL AC+IH N++M + I   L   K V V
Sbjct: 407 VDMYGRAGLLEEAEAFLRSMPVEAEGPIWGALLQACKIHGNEKMSEWIMGHL-KGKSVGV 465

Query: 415 GTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           GT AL+SN +A ++RW+D NK+R  +R   LKK  GCSW+E+
Sbjct: 466 GTLALLSNMYASSERWDDANKVRKSMRGTRLKKVAGCSWVEL 507


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/461 (39%), Positives = 293/461 (63%), Gaps = 6/461 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           MLS     ++YT    LKAC+ +   ++  E+H   I+ G   D+++ N+L+  Y     
Sbjct: 116 MLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDV 175

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSA 117
           I SA ++F++    D+VSWTT+I G  K GF +E + +F   CG +++ +  TLV VLS+
Sbjct: 176 IRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSS 235

Query: 118 CSSLVSHKLGKAIHAHSLRNLNEN-NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
           C+ L   +LG+ +H + +RN N N ++ + NA++D Y++CG       +F +MP +NVVS
Sbjct: 236 CARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVS 295

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           W +MI G A++G  KE++ +F++M++    +P++ TLV VL++C+++  L  GK+VH+Y+
Sbjct: 296 WNSMISGLAQKGQFKESLYMFRKMQRLG-VKPDDVTLVAVLNSCANLGVLELGKWVHAYL 354

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
             R  +     +GNA+++MY KCG +  A  VF  +  KD  S++ +I GLAM+G G +A
Sbjct: 355 D-RNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKA 413

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
           L LFS M    + PD+VTF+ +++ACSH GLV++G   F+ MST+Y + PQ++HY C+VD
Sbjct: 414 LDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVD 473

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGT 416
           + GRAGL+ EAE FIR MPIE +  V GALL AC+IH   E+ + + + +   +    G 
Sbjct: 474 LLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGA 533

Query: 417 FALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           + LMSN ++ A+RW D  K+R  ++   L+K  GCS IE++
Sbjct: 534 YVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIELD 574


>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 615

 Score =  360 bits (924), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 190/459 (41%), Positives = 281/459 (61%), Gaps = 4/459 (0%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    S + YT    LKACS +H   +AL+IHAH I+ G   ++F++N+L+ FY     
Sbjct: 129 MLLIGLSPDTYTLPYLLKACSQSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGF 188

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSS 120
           I +  ++F+     D++SWTT+I   SK G+  EAI  F  ++   +  TLV VLSACS 
Sbjct: 189 IEAVEKVFDQGPHWDLISWTTLIQAYSKMGYPSEAIAAFFRMNCTADRMTLVVVLSACSQ 248

Query: 121 LVSHKLGKAIHAHSLRNLNE--NNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWT 178
           L    LGK I A+   +L +  +++ L NA+LD Y++CG       LF  MP +N+VSW 
Sbjct: 249 LGDFTLGKKILAYMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWN 308

Query: 179 TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST 238
           +MI G A +G  KEA+ +F+ M+ T   +P+  TLV VL++C+++  L  GK+VHSYI  
Sbjct: 309 SMISGLAHQGLFKEALHMFRRMQ-TMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDK 367

Query: 239 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQ 298
            + +     V NA+++MY KCG +  A  VF  +  KD  S++ +I G AM+G   +AL 
Sbjct: 368 NH-MKADGYVANALVDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALA 426

Query: 299 LFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMY 358
           +FS M    V PD VT + ++SACSH GL+++G   F+ MS +Y + PQ +HY C+VD+ 
Sbjct: 427 IFSEMPRMGVRPDHVTLVGVLSACSHAGLLEEGRRHFQDMSRLYHLQPQTEHYGCMVDLL 486

Query: 359 GRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFA 418
           GRAGL+ EAEAF  +MPI  + SVWG+LL AC+IH   E+ + + Q L+  +    G + 
Sbjct: 487 GRAGLISEAEAFTNKMPIVPDASVWGSLLGACKIHAKVELGETVIQKLIEMEPERDGAYI 546

Query: 419 LMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           LMSN ++ A+RW D  K R  +++  +KK  GCS IEV+
Sbjct: 547 LMSNIYSSANRWRDALKWRKAMKQNNIKKTPGCSSIEVD 585


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  355 bits (911), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 183/472 (38%), Positives = 286/472 (60%), Gaps = 21/472 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           ++YT+    KAC+     +   EI  HV+  G   DIF+ N+++H  V+  D+  A ++F
Sbjct: 78  DNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMF 137

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHK 125
           +     D+VSW ++I+G  + G+  EA++ +  + V   KP+  T++ V+S+C+ L    
Sbjct: 138 DKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLD 197

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC----------------GYLFVKM 169
           LG+  H +   N  +  + L NA++D Y++CG+L S                   LF +M
Sbjct: 198 LGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEM 257

Query: 170 PKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 229
           P ++VV W  MIGGY      KEA+++F EM+      P+E T+V+ LSACS + AL  G
Sbjct: 258 PDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMN-INPDEVTMVSCLSACSQLGALDVG 316

Query: 230 KYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAM 289
            ++H YI  +++LS++  +G A+I+MY KCG +  AIQVF  L  ++ ++W+ +ISGLA+
Sbjct: 317 IWIHHYIE-KHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLAL 375

Query: 290 NGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQ 349
           +G    A+  FS MI N+V PD+VTF+ L+SAC HGGLV++G   F  MS+ + + P+++
Sbjct: 376 HGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLK 435

Query: 350 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNK 409
           HY+C+VD+ GRAGLLEEAE  I+ MPIEA+  VWGAL  ACRIH N  M +R    L+  
Sbjct: 436 HYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQM 495

Query: 410 KGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
                G + L++N +  A+ W++  K R  +R+ G++K  GCS IEVN  ++
Sbjct: 496 DPHDSGIYVLLANMYGEAEMWKEAGKXRKLMRQRGVEKTPGCSSIEVNGIVY 547



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 189/378 (50%), Gaps = 26/378 (6%)

Query: 40  GHLHDIFIQNSLLHFYVTV--KDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAID 97
           G + D F  + L+ F      +D+     I  +   P+  SW   I G       +EA+ 
Sbjct: 5   GLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVV 64

Query: 98  MFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFY 153
           ++  +      KP+  T   +  AC+ L   ++G  I  H L    +++I + NA++   
Sbjct: 65  LYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLL 124

Query: 154 IRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATL 213
           + CG L     +F K   R++VSW +MI GY  RG+  EA++ ++EM K +  +P+E T+
Sbjct: 125 VSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREM-KVEGIKPDEVTM 183

Query: 214 VNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 273
           + V+S+C+ +  L  G+  H YI     L ++  + NA+++MY+KCG++  A ++F+ + 
Sbjct: 184 IGVVSSCAQLEDLDLGRESHCYIEEN-GLKLTVPLANALMDMYMKCGNLESARKLFDSMT 242

Query: 274 YKDKISWST----------------VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIA 317
            K  +SW+T                +I G      G++AL LF+ M    + PD+VT ++
Sbjct: 243 NKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVS 302

Query: 318 LISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIE 377
            +SACS  G +D G+ +   +   +E+   +     ++DMY + G + +A    +E+P  
Sbjct: 303 CLSACSQLGALDVGIWIHHYIEK-HELSLNVALGTALIDMYAKCGKITKAIQVFQELPGR 361

Query: 378 AEWSVWGALLNACRIHRN 395
              + W A+++   +H N
Sbjct: 362 NSLT-WTAIISGLALHGN 378


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  352 bits (902), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 185/486 (38%), Positives = 287/486 (59%), Gaps = 34/486 (6%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           ++YT+    KAC+     +   EI  HV+  G   DIF+ N+++H  V+  D+  A ++F
Sbjct: 106 DNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMF 165

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHK 125
           +     D+VSW ++I+G  + G+  EA++ +  + V   KP+  T++ V+S+C+ L    
Sbjct: 166 DKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLD 225

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG+  H +   N  +  + L NA++D Y++CG+L S   LF  M  + +VSWTTM+ GYA
Sbjct: 226 LGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYA 285

Query: 186 ERGFCKEAVSVFQEM------------------EKTKEA------------EPNEATLVN 215
           + G    A  +F EM                   + KEA             P+E T+V+
Sbjct: 286 QSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVS 345

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
            LSACS + AL  G ++H YI  +++LS++  +G A+I+MY KCG +  AIQVF  L  +
Sbjct: 346 CLSACSQLGALDVGIWIHHYIE-KHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGR 404

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILF 335
           + ++W+ +ISGLA++G    A+  FS MI N+V PD+VTF+ L+SAC HGGLV++G   F
Sbjct: 405 NSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYF 464

Query: 336 KAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN 395
             MS+ + + P+++HY+C+VD+ GRAGLLEEAE  I+ MPIEA+  VWGAL  ACRIH N
Sbjct: 465 SQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGN 524

Query: 396 DEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
             M +R    L+       G + L++N +  A+ W++  K R  +R+ G++K  GCS IE
Sbjct: 525 VLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSIE 584

Query: 456 VNPSIF 461
           VN  ++
Sbjct: 585 VNGIVY 590



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 105/402 (26%), Positives = 197/402 (49%), Gaps = 41/402 (10%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTV--KDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           +I + ++  G + D F  + L+ F      +D+     I  +   P+  SW   I G   
Sbjct: 24  QIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLD 83

Query: 89  CGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
               +EA+ ++  +      KP+  T   +  AC+ L   ++G  I  H L    +++I 
Sbjct: 84  SENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIF 143

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           + NA++   + CG L     +F K   R++VSW +MI GY  RG+  EA++ ++EM K +
Sbjct: 144 VSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREM-KVE 202

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
             +P+E T++ V+S+C+ +  L  G+  H YI     L ++  + NA+++MY+KCG++  
Sbjct: 203 GIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEEN-GLKLTVPLANALMDMYMKCGNLES 261

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGC-------------------------------G 293
           A ++F+ +  K  +SW+T++ G A +G                                G
Sbjct: 262 ARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRG 321

Query: 294 RQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
           ++AL LF+ M    + PD+VT ++ +SACS  G +D G+ +   +   +E+   +     
Sbjct: 322 KEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEK-HELSLNVALGTA 380

Query: 354 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN 395
           ++DMY + G + +A    +E+P     + W A+++   +H N
Sbjct: 381 LIDMYAKCGKITKAIQVFQELPGRNSLT-WTAIISGLALHGN 421


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  350 bits (898), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 188/483 (38%), Positives = 284/483 (58%), Gaps = 35/483 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YTF   +KA +          IH  V++     D+FI NSL+HFY ++ D+ SA+ +F
Sbjct: 130 NSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVF 189

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           + +V  D+VSW ++ISG  + G  +EA+ +F  +   + +PN  T+V VLSAC+  +  +
Sbjct: 190 SKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLE 249

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+    +  RN  + N+IL NA+LD Y++CGSL     LF KM ++++VSWTTMI GYA
Sbjct: 250 FGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYA 309

Query: 186 -------------------------------ERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
                                          + G  KEA+++F+E++  K  +PNE TL 
Sbjct: 310 KVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLA 369

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
           + L+AC+ + A+  G ++H YI  +  + ++  +  ++I+MY KCG +  A++VF  +  
Sbjct: 370 STLAACAQLGAMDLGGWIHVYIK-KQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVER 428

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           +D   WS +I+GLAM+G GR A+ LFS M    V P+ VTF  L+ ACSH GLVD+G + 
Sbjct: 429 RDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLF 488

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F  M  VY +VP  +HYAC+VD+ GRAG LEEA   I +MPI    SVWGALL ACRI+ 
Sbjct: 489 FNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYG 548

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           N E+ +     L+     + G + L+SN +A A +W+  +++R  ++  GL+K+ GCS I
Sbjct: 549 NVELAEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSI 608

Query: 455 EVN 457
           EVN
Sbjct: 609 EVN 611



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 107/430 (24%), Positives = 206/430 (47%), Gaps = 56/430 (13%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHF--YVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           ++HAH++  G   D      L       +   +  A ++F+ +  P++ +W T+I   + 
Sbjct: 48  QLHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYACKVFDQIPRPNLYTWNTLIRAFAS 107

Query: 89  CGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
                + + +F  +       PN+ T   V+ A + + S   G+AIH   ++    +++ 
Sbjct: 108 SPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLF 167

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           + N+++ FY   G L S   +F K+ ++++VSW +MI G+ + G  +EA+ +F+ M K +
Sbjct: 168 ISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRM-KME 226

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
            A PN  T+V VLSAC+    L FG++   YI  R  + ++ ++ NA+++MYVKCG +  
Sbjct: 227 NARPNRVTMVGVLSACAKRIDLEFGRWACDYIE-RNGIDINLILSNAMLDMYVKCGSLED 285

Query: 265 AIQVFNMLAYKDKISWSTVISGLA-------------------------------MNGCG 293
           A ++F+ +  KD +SW+T+I G A                                NG  
Sbjct: 286 ARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKP 345

Query: 294 RQALQLFSLMIINA-VFPDDVTFIALISACSHGGLVDQG-----LILFKAMSTVYEIVPQ 347
           ++AL +F  + +N    P++VT  + ++AC+  G +D G      I  + +   + I   
Sbjct: 346 KEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTS 405

Query: 348 MQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIR 403
           +      +DMY + G LE+A      +    +  VW A++    +H +     ++F +++
Sbjct: 406 L------IDMYSKCGHLEKALEVFYSVE-RRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQ 458

Query: 404 QDLVNKKGVS 413
           +  V    V+
Sbjct: 459 ETKVKPNAVT 468


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  348 bits (892), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 173/453 (38%), Positives = 285/453 (62%), Gaps = 7/453 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +TF   LK CS      +  +IHA +++ G     F++N+L+H Y    ++  A ++F
Sbjct: 123 DEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVF 182

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHK 125
           + +   +V +W ++ +G +K G  +E + +F     +D++ +  TLVSVL+AC  L   +
Sbjct: 183 DEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLE 242

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG+ I+ +      + N  L  +++D Y +CG + +   LF +M +R+VV+W+ MI GY+
Sbjct: 243 LGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYS 302

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST-RYDLSV 244
           +   C+EA+ +F EM+K    +PNE T+V++LS+C+ + AL  GK+VH +I   R  L+V
Sbjct: 303 QASRCREALDLFHEMQKAN-IDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTV 361

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           +  +G A+++ Y KCG V  +I+VF  +  K+ +SW+ +I GLA NG G++AL+ F LM+
Sbjct: 362 T--LGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLML 419

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
              V P+DVTFI ++SACSH GLVD+G  LF +MS  + I P+++HY C+VD+ GRAGL+
Sbjct: 420 EKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLI 479

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           EEA  FI+ MPI+    +W  LL +C++H+N E+ +   + L+  +    G + L+SN +
Sbjct: 480 EEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIY 539

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           A   RWED  K+R E++  G+KK  GCS IE++
Sbjct: 540 ASVGRWEDALKVRGEMKEKGIKKTPGCSLIELD 572



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 185/369 (50%), Gaps = 19/369 (5%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTV--KDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           EIHAH+I+   L    +  +LL     +    +  A  IF  +  PD  ++  +I G + 
Sbjct: 42  EIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQIDEPDSPAYNIMIRGFTL 101

Query: 89  CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
                EAI +F  +    V+P+  T   +L  CS L +   G+ IHA  ++    ++  +
Sbjct: 102 KQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFV 161

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            N ++  Y  CG +     +F +M +RNV +W +M  GY + G  +E V +F EM +  +
Sbjct: 162 KNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLEL-D 220

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
              +E TLV+VL+AC  ++ L  G++++ Y+  +  L  +  +  ++++MY KCG V  A
Sbjct: 221 IRFDEVTLVSVLTACGRLADLELGEWINRYVEEK-GLKGNPTLITSLVDMYAKCGQVDTA 279

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
            ++F+ +  +D ++WS +ISG +     R+AL LF  M    + P+++T ++++S+C+  
Sbjct: 280 RRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVL 339

Query: 326 GLVDQG-----LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 380
           G ++ G      I  K M     +         ++D Y + G +E +     +MP++   
Sbjct: 340 GALETGKWVHFFIKKKRMKLTVTL------GTALMDFYAKCGSVESSIEVFGKMPVKNVL 393

Query: 381 SVWGALLNA 389
           S W  L+  
Sbjct: 394 S-WTVLIQG 401



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 21/145 (14%)

Query: 191 KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLS---VSN 246
           K ++S+F E  KT            +L  C +I  L+    +H++ I TR  L      N
Sbjct: 16  KTSISLFPENPKTL-----------ILEQCKTIRDLN---EIHAHLIKTRLLLKPKVAEN 61

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
           L+ +A I +      +  A+ +F  +   D  +++ +I G  +     +A+ LF  M  N
Sbjct: 62  LLESAAILLPT---SMDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHEN 118

Query: 307 AVFPDDVTFIALISACSHGGLVDQG 331
           +V PD+ TF  ++  CS    + +G
Sbjct: 119 SVQPDEFTFPCILKVCSRLQALSEG 143


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  344 bits (882), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 179/463 (38%), Positives = 284/463 (61%), Gaps = 15/463 (3%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S + +T    +K+CS          + A+  + G + D F+ NSL+H Y +  D+ +AH 
Sbjct: 168 SPDQHTVANTVKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHV 227

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG-IDVKPNAN--TLVSVLSACSSLVS 123
           +F++V    V++W  +I+G  K G  KE ++MF G ++V+   +  TL+SV +AC  L  
Sbjct: 228 LFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGD 287

Query: 124 HKLGKAIHAHS-----LRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWT 178
             LG+ I  ++     LR+ N     L  A++D Y +CG L     LF +M  R+VV+W+
Sbjct: 288 ANLGQWIAEYAEEKGMLRSRN-----LATALVDMYAKCGELDKARRLFDRMHSRDVVAWS 342

Query: 179 TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST 238
            MI GY +   C+EA+++F EM+ T E  PN+ T+V+VLSAC+ + AL  GK+VHSYI  
Sbjct: 343 AMISGYTQSDRCREALAIFNEMQGT-EVNPNDVTMVSVLSACAVLGALETGKWVHSYIR- 400

Query: 239 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQ 298
           R DL ++ ++G A+++ Y KCG +  A++ F  +  ++  +W+ +I G+A NG  R+AL+
Sbjct: 401 RKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALE 460

Query: 299 LFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMY 358
           LFS M+   + P DVTFI ++ ACSHG LV++G   F +M+  Y I P+++HY C+VD+ 
Sbjct: 461 LFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLL 520

Query: 359 GRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFA 418
           GRAGL++EA  FIR MPIE    VW ALL+AC +H+N E+ +   + +V       G + 
Sbjct: 521 GRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYI 580

Query: 419 LMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           L+SNT+A   +W++   +R E++  G++K  GCS IE+  +IF
Sbjct: 581 LLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIELEGTIF 623



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 167/316 (52%), Gaps = 8/316 (2%)

Query: 78  SWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIHAH 133
           S+  +I    + G  ++A+ +F  +     V P+ +T+ + + +CS +    +G+ + A+
Sbjct: 137 SYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQAY 196

Query: 134 SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
           + +     +  + N+++  Y  CG + +   LF  +  + V++W  MI GY + G  KE 
Sbjct: 197 AFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEV 256

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVI 253
           V +F+ M + + A  +E TL++V +AC  +   + G+++  Y   +  L   NL   A++
Sbjct: 257 VEMFKGMLEVR-APFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNL-ATALV 314

Query: 254 NMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDV 313
           +MY KCG++  A ++F+ +  +D ++WS +ISG   +   R+AL +F+ M    V P+DV
Sbjct: 315 DMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDV 374

Query: 314 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIRE 373
           T ++++SAC+  G ++ G  +   +    ++   +     +VD Y + G +++A      
Sbjct: 375 TMVSVLSACAVLGALETGKWVHSYIRR-KDLPLTVILGTALVDFYAKCGCIKDAVKAFES 433

Query: 374 MPIEAEWSVWGALLNA 389
           MP+   W+ W AL+  
Sbjct: 434 MPVRNTWT-WTALIKG 448


>gi|356546651|ref|XP_003541737.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 293

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 157/272 (57%), Positives = 207/272 (76%), Gaps = 1/272 (0%)

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G+C+EA +VF+ M  ++EAEPNEAT+V VLSAC+SI  LS G++VHSYI +R+DL V   
Sbjct: 12  GYCEEAFAVFKRMVLSEEAEPNEATIVTVLSACASIGTLSLGQWVHSYIDSRHDLVVDEN 71

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           +GNA++NMYVKCGD+ +  +VF+M+ +KD ISW T I GLAMNG  R  L+LFS M++  
Sbjct: 72  IGNALLNMYVKCGDMQMGFRVFDMIVHKDVISWGTFICGLAMNGYERNTLELFSRMLVEG 131

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           V PD+VTFI ++SACSH GL+++G++ FKAM   Y IVPQM+HY C+VDMYGRAGL EEA
Sbjct: 132 VEPDNVTFIGVLSACSHAGLLNEGVMFFKAMRDFYGIVPQMRHYGCMVDMYGRAGLFEEA 191

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
           EA +R MP+EAE  +WGALL AC+IHRN++M + IR  L   K V VGT AL+SN +A +
Sbjct: 192 EALLRRMPVEAEGPIWGALLQACKIHRNEKMSEWIRGHL-KGKSVGVGTLALLSNMYASS 250

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPS 459
           +RW+D  K+R  +R  GLKK  GCSW+E+  S
Sbjct: 251 ERWDDAKKVRKSMRGTGLKKVAGCSWVELEMS 282



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 95/179 (53%), Gaps = 12/179 (6%)

Query: 90  GFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIHAH--SLRNL--NEN 141
           G+ +EA  +F  +    + +PN  T+V+VLSAC+S+ +  LG+ +H++  S  +L  +EN
Sbjct: 12  GYCEEAFAVFKRMVLSEEAEPNEATIVTVLSACASIGTLSLGQWVHSYIDSRHDLVVDEN 71

Query: 142 NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME 201
              + NA+L+ Y++CG +     +F  +  ++V+SW T I G A  G+ +  + +F  M 
Sbjct: 72  ---IGNALLNMYVKCGDMQMGFRVFDMIVHKDVISWGTFICGLAMNGYERNTLELFSRM- 127

Query: 202 KTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCG 260
             +  EP+  T + VLSACS    L+ G      +   Y +         +++MY + G
Sbjct: 128 LVEGVEPDNVTFIGVLSACSHAGLLNEGVMFFKAMRDFYGIVPQMRHYGCMVDMYGRAG 186



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 10/126 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIF----IQNSLLHFYV 56
           +LS  +  N  T    L AC+          +H+++      HD+     I N+LL+ YV
Sbjct: 25  VLSEEAEPNEATIVTVLSACASIGTLSLGQWVHSYI---DSRHDLVVDENIGNALLNMYV 81

Query: 57  TVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVS 113
              D+    ++F+ +V  DV+SW T I GL+  G+ +  +++F  +    V+P+  T + 
Sbjct: 82  KCGDMQMGFRVFDMIVHKDVISWGTFICGLAMNGYERNTLELFSRMLVEGVEPDNVTFIG 141

Query: 114 VLSACS 119
           VLSACS
Sbjct: 142 VLSACS 147


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  340 bits (872), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 178/487 (36%), Positives = 285/487 (58%), Gaps = 36/487 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           ++YT+    K C+       A EI  HVI+ G   D+F+ N+++H  V+  ++ +A ++F
Sbjct: 154 DNYTYPLLFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLF 213

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLVSHK 125
           +     D+VSW +II+G  +CG   EA D++     ++V P+  T++ V+SA + L +  
Sbjct: 214 DESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLA 273

Query: 126 LGKAIHAHSLRNLNEN-NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           LG+ +H  S+  +  N  + L NA++D YI+C ++ +   LF  M K+ VVSWTTM+ GY
Sbjct: 274 LGRKLH-QSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGY 332

Query: 185 AERGFCKEAVSVFQEM------------------EKTKEA------------EPNEATLV 214
           A+ G  + AV +F EM                  +++KEA             P++ T+V
Sbjct: 333 AKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVV 392

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
           N LSACS + AL  G ++H Y+  +++L+++  +G A+++MY KCG++  AIQVF  +  
Sbjct: 393 NCLSACSQLGALDVGIWMHHYVD-KHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPG 451

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           ++ ++W+ +I GLA++G    A+  FS MI   + PD++TFI ++SAC HGGLVDQG   
Sbjct: 452 RNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDY 511

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F  M++ Y I P+++HY+C+VD+ GRAG LEEAE  IR MP E +  VWGAL    RIH 
Sbjct: 512 FYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHG 571

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           N  M +R    L+       G + L++N +  A+ WE   K+R  +   G++K  GCS I
Sbjct: 572 NVHMGERAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSI 631

Query: 455 EVNPSIF 461
           E+N  ++
Sbjct: 632 EMNGLVY 638



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 100/414 (24%), Positives = 189/414 (45%), Gaps = 44/414 (10%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV--KDIFSAHQIFNSVVFP 74
           L+AC+      K  EIHA +I  G + D F  + L+ F      +++    +I N+    
Sbjct: 61  LEACT---SMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNAANL 117

Query: 75  DVVSWTTIISGLSKCGFHKEAIDMFCGIDVK----PNANTLVSVLSACSSLVSHKLGKAI 130
           +  SW   I G  +      A+ ++  +  K    P+  T   +   C+          I
Sbjct: 118 NXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEI 177

Query: 131 HAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFC 190
             H ++   ++++ + NAI+   + CG L +   LF +   R++VSW ++I GY   G  
Sbjct: 178 LGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLA 237

Query: 191 KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGN 250
            EA  ++ +M +     P+E T++ V+SA + +  L+ G+ +H  I     L+++  + N
Sbjct: 238 DEAFDLYYKMGELN-VMPDEVTMIGVVSASAQLENLALGRKLHQSIE-EMGLNLTVPLAN 295

Query: 251 AVINMYVKCGDV----------------------------GI---AIQVFNMLAYKDKIS 279
           A+++MY+KC ++                            G+   A+++FN +  KD + 
Sbjct: 296 ALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVL 355

Query: 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMS 339
           W+ +I G       ++AL LF  M  ++V PD +T +  +SACS  G +D G+ +   + 
Sbjct: 356 WNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVD 415

Query: 340 TVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
             + +   +     +VDMY + G +++A     EMP     + W A++    +H
Sbjct: 416 K-HNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLT-WTAIICGLALH 467



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 142/335 (42%), Gaps = 47/335 (14%)

Query: 92  HKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILD 151
           HK+    +    V   +N L+S+L AC+S+      K IHA  +       +I D   L 
Sbjct: 38  HKDKPTNWNASHVLIQSNPLLSLLEACTSMAKM---KEIHAQMI----STGLISDGFALS 90

Query: 152 FYIR-CG-----SLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
             +  C      +L  C  +       N  SW   I GY E      AV +++ M +   
Sbjct: 91  RLVAFCAISEWRNLDYCDKILNNAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGS 150

Query: 206 AEPNEATLVNVLSACSSIS-ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
           A P+  T   +   C+  S + +  + +   I   +D  +   V NA+I++ V CG++  
Sbjct: 151 AIPDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGFDSDL--FVHNAIIHVLVSCGELLA 208

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS- 323
           A ++F+    +D +SW+++I+G    G   +A  L+  M    V PD+VT I ++SA + 
Sbjct: 209 ARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQ 268

Query: 324 ----------HGGLVDQGLIL-----------------FKAMSTVYEIVPQ--MQHYACV 354
                     H  + + GL L                  +A   ++E + +  +  +  +
Sbjct: 269 LENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTM 328

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           V  Y + GLLE A     EMP E +  +W AL+  
Sbjct: 329 VIGYAKFGLLESAVRLFNEMP-EKDVVLWNALIGG 362


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  340 bits (872), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 178/487 (36%), Positives = 285/487 (58%), Gaps = 36/487 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           ++YT+    K C+       A EI  HVI+ G   D+F+ N+++H  V+  ++ +A ++F
Sbjct: 154 DNYTYPLLFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLF 213

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLVSHK 125
           +     D+VSW +II+G  +CG   EA D++     ++V P+  T++ V+SA + L +  
Sbjct: 214 DESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLA 273

Query: 126 LGKAIHAHSLRNLNEN-NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           LG+ +H  S+  +  N  + L NA++D YI+C ++ +   LF  M K+ VVSWTTM+ GY
Sbjct: 274 LGRKLH-QSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGY 332

Query: 185 AERGFCKEAVSVFQEM------------------EKTKEA------------EPNEATLV 214
           A+ G  + AV +F EM                  +++KEA             P++ T+V
Sbjct: 333 AKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVV 392

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
           N LSACS + AL  G ++H Y+  +++L+++  +G A+++MY KCG++  AIQVF  +  
Sbjct: 393 NCLSACSQLGALDVGIWMHHYVD-KHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPG 451

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           ++ ++W+ +I GLA++G    A+  FS MI   + PD++TFI ++SAC HGGLVDQG   
Sbjct: 452 RNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDY 511

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F  M++ Y I P+++HY+C+VD+ GRAG LEEAE  IR MP E +  VWGAL    RIH 
Sbjct: 512 FYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHG 571

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           N  M +R    L+       G + L++N +  A+ WE   K+R  +   G++K  GCS I
Sbjct: 572 NVHMGERAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSI 631

Query: 455 EVNPSIF 461
           E+N  ++
Sbjct: 632 EMNGLVY 638



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/414 (24%), Positives = 190/414 (45%), Gaps = 44/414 (10%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV--KDIFSAHQIFNSVVFP 74
           L+AC+      K  EIHA +I  G + D F  + L+ F      +++    +I N+    
Sbjct: 61  LEACT---SMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNAANL 117

Query: 75  DVVSWTTIISGLSKCGFHKEAIDMFCGIDVK----PNANTLVSVLSACSSLVSHKLGKAI 130
           +V SW   I G  +      A+ ++  +  K    P+  T   +   C+          I
Sbjct: 118 NVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEI 177

Query: 131 HAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFC 190
             H ++   ++++ + NAI+   + CG L +   LF +   R++VSW ++I GY   G  
Sbjct: 178 LGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLA 237

Query: 191 KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGN 250
            EA  ++ +M +     P+E T++ V+SA + +  L+ G+ +H  I     L+++  + N
Sbjct: 238 DEAFDLYYKMGELN-VMPDEVTMIGVVSASAQLENLALGRKLHQSIE-EMGLNLTVPLAN 295

Query: 251 AVINMYVKCGDV----------------------------GI---AIQVFNMLAYKDKIS 279
           A+++MY+KC ++                            G+   A+++FN +  KD + 
Sbjct: 296 ALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVL 355

Query: 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMS 339
           W+ +I G       ++AL LF  M  ++V PD +T +  +SACS  G +D G+ +   + 
Sbjct: 356 WNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVD 415

Query: 340 TVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
             + +   +     +VDMY + G +++A     EMP     + W A++    +H
Sbjct: 416 K-HNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLT-WTAIICGLALH 467



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 143/335 (42%), Gaps = 47/335 (14%)

Query: 92  HKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILD 151
           HK+    +    V   +N L+S+L AC+S+      K IHA  +       +I D   L 
Sbjct: 38  HKDKPTNWNASHVLIQSNPLLSLLEACTSMAKM---KEIHAQMI----STGLISDGFALS 90

Query: 152 FYIR-CG-----SLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
             +  C      +L  C  +       NV SW   I GY E      AV +++ M +   
Sbjct: 91  RLVAFCAISEWRNLDYCDKILNNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGS 150

Query: 206 AEPNEATLVNVLSACSSIS-ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
           A P+  T   +   C+  S + +  + +   I   +D  +   V NA+I++ V CG++  
Sbjct: 151 AIPDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGFDSDL--FVHNAIIHVLVSCGELLA 208

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS- 323
           A ++F+    +D +SW+++I+G    G   +A  L+  M    V PD+VT I ++SA + 
Sbjct: 209 ARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQ 268

Query: 324 ----------HGGLVDQGLIL-----------------FKAMSTVYEIVPQ--MQHYACV 354
                     H  + + GL L                  +A   ++E + +  +  +  +
Sbjct: 269 LENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTM 328

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           V  Y + GLLE A     EMP E +  +W AL+  
Sbjct: 329 VIGYAKFGLLESAVRLFNEMP-EKDVVLWNALIGG 362


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 183/487 (37%), Positives = 285/487 (58%), Gaps = 35/487 (7%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           P   + +TF   +KA S           H  VI+     D+FI NSL+HFY    ++   
Sbjct: 131 PDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLG 190

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSL 121
           +++F ++   DVVSW ++I+   + G  +EA+++F  ++   VKPN  T+V VLSAC+  
Sbjct: 191 YRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKK 250

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
              + G+ +H++  RN    ++ L NA+LD Y +CGS+     LF KMP++++VSWTTM+
Sbjct: 251 SDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTML 310

Query: 182 GGYA-------------------------------ERGFCKEAVSVFQEMEKTKEAEPNE 210
            GYA                               + G  KEA+ +F E++ +K A+P+E
Sbjct: 311 VGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDE 370

Query: 211 ATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN 270
            TLV+ LSAC+ + A+  G ++H YI  +  + ++  +  ++I+MY KCGD+  A+ VF+
Sbjct: 371 VTLVSTLSACAQLGAMDLGGWIHVYIK-KQGMKLNCHLTTSLIDMYCKCGDLQKALMVFH 429

Query: 271 MLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQ 330
            +  KD   WS +I+GLAM+G G+ A+ LFS M  + V P+ VTF  ++ ACSH GLV++
Sbjct: 430 SVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEE 489

Query: 331 GLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 390
           G   F  M  VY ++P ++HYAC+VD+ GRAGLLEEA   I +MP+    SVWGALL AC
Sbjct: 490 GRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGAC 549

Query: 391 RIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTG 450
            IH N  + ++    L+  +  + G + L+SN +A A +W+  + +R  +R +GLKK+ G
Sbjct: 550 TIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPG 609

Query: 451 CSWIEVN 457
           CS IEV+
Sbjct: 610 CSSIEVD 616



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 123/430 (28%), Positives = 213/430 (49%), Gaps = 56/430 (13%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYV--TVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           +IHA ++  G   D F  + L+          +  A Q+F+ +  P++ +W T+I   + 
Sbjct: 53  QIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYAS 112

Query: 89  CGFHKEAIDMFCGIDVK----PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
                +++ +F  +  +    P+  T   ++ A S L     GKA H   ++ L  +++ 
Sbjct: 113 SSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVF 172

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           + N+++ FY +CG L     +FV +P+R+VVSW +MI  + + G  +EA+ +FQEME T+
Sbjct: 173 ILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEME-TQ 231

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
             +PN  T+V VLSAC+  S   FG++VHSYI  R  +  S  + NA+++MY KCG V  
Sbjct: 232 NVKPNGITMVGVLSACAKKSDFEFGRWVHSYIE-RNRIGESLTLSNAMLDMYTKCGSVED 290

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNG-----------------------------CG-- 293
           A ++F+ +  KD +SW+T++ G A  G                             CG  
Sbjct: 291 AKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKP 350

Query: 294 RQALQLF-SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
           ++AL+LF  L +     PD+VT ++ +SAC+  G +D G         VY I  Q     
Sbjct: 351 KEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLG-----GWIHVY-IKKQGMKLN 404

Query: 353 C-----VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDRIR 403
           C     ++DMY + G L++A      +    +  VW A++    +H + +    +F +++
Sbjct: 405 CHLTTSLIDMYCKCGDLQKALMVFHSVE-RKDVFVWSAMIAGLAMHGHGKDAIALFSKMQ 463

Query: 404 QDLVNKKGVS 413
           +D V    V+
Sbjct: 464 EDKVKPNAVT 473



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 133/282 (47%), Gaps = 16/282 (5%)

Query: 112 VSVLSACSSLVSHKLGKAIHAHSLRN------LNENNIILDNAILDFYIRCGSLASCGYL 165
           +S++  CS     K  K IHA  LR        + + +I   A+  F     SL     +
Sbjct: 39  LSLIDQCSET---KQLKQIHAQMLRTGLFFDPFSASRLITAAALSPF----PSLDYAQQV 91

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
           F ++P  N+ +W T+I  YA      +++ +F  M       P++ T   ++ A S +  
Sbjct: 92  FDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEE 151

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285
           L  GK  H  +  +  L     + N++I+ Y KCG++G+  +VF  +  +D +SW+++I+
Sbjct: 152 LFTGKAFHGMV-IKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMIT 210

Query: 286 GLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 345
                GC  +AL+LF  M    V P+ +T + ++SAC+     + G  +   +     I 
Sbjct: 211 AFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIER-NRIG 269

Query: 346 PQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
             +     ++DMY + G +E+A+    +MP E +   W  +L
Sbjct: 270 ESLTLSNAMLDMYTKCGSVEDAKRLFDKMP-EKDIVSWTTML 310


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 183/489 (37%), Positives = 285/489 (58%), Gaps = 41/489 (8%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S +++T+    KA       ++  +++  V++ G   D ++ NSL+  Y  V  + +  Q
Sbjct: 129 SPDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQ 188

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLV 122
           +F  +   DVVSW  +ISG  KC  +++A+D+F  +     ++PN  T+VS LSAC +L 
Sbjct: 189 VFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALK 248

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLA---------------------- 160
             +LGK IH +    L    I + NA++D Y +CG L+                      
Sbjct: 249 MLELGKEIHRYVREQLG-FTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVS 307

Query: 161 ---SCGYL------FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEA 211
              +CG L      F + P R+VV WT MI GY +     +AV++F+EM+  K   P+  
Sbjct: 308 GYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQ-IKRVSPDRF 366

Query: 212 TLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 271
           TLV +L+ C+ +  L  GK++H YI     + +  +VG A+I MY KCG +  ++++FN 
Sbjct: 367 TLVALLTGCAQLGTLEQGKWIHGYIDEN-KIMIDAVVGTALIEMYAKCGFIEKSLEIFNG 425

Query: 272 LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
           L  KD  SW+++I GLAMNG   +AL+LF+ M+   V PDD+TFI ++SACSHGGLV++G
Sbjct: 426 LKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEG 485

Query: 332 LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP---IEAEWSVWGALLN 388
              F++M+ VY+I P+++HY C++D+ GRAG L+EAE  I + P    E    ++GALL+
Sbjct: 486 RKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLS 545

Query: 389 ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
           ACR H N EM +R+ + LV  +        L++N +A ADRWED  K+R +++ +G+KK 
Sbjct: 546 ACRTHGNVEMGERVAKRLVGIESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKV 605

Query: 449 TGCSWIEVN 457
            GCS +EVN
Sbjct: 606 PGCSSVEVN 614



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 174/347 (50%), Gaps = 41/347 (11%)

Query: 57  TVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVS 113
           ++ ++  A +IFN +  P +  +  +I   +K G  ++A+ +F  +    + P+  T   
Sbjct: 78  SIGNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPF 137

Query: 114 VLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
           V  A   L   + G+ ++   +++  E +  + N+++D Y   G + +   +F +MP+R+
Sbjct: 138 VFKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRD 197

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
           VVSW  +I GY +    ++AV VF+ M++     PNEAT+V+ LSAC ++  L  GK +H
Sbjct: 198 VVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIH 257

Query: 234 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG 293
            Y+  R  L  +  +GNA+++MY KCG + IA ++FN +  K  I W++++SG     CG
Sbjct: 258 RYV--REQLGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYV--NCG 313

Query: 294 R---------------------------------QALQLFSLMIINAVFPDDVTFIALIS 320
           +                                  A+ LF  M I  V PD  T +AL++
Sbjct: 314 QLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLT 373

Query: 321 ACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
            C+  G ++QG  +   +     ++  +   A +++MY + G +E++
Sbjct: 374 GCAQLGTLEQGKWIHGYIDENKIMIDAVVGTA-LIEMYAKCGFIEKS 419


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 170/487 (34%), Positives = 290/487 (59%), Gaps = 36/487 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYV------------ 56
           N YTF   LK+C+ +   ++  +IH HV++ G+  D+++  SL+  Y             
Sbjct: 65  NSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVF 124

Query: 57  -------------------TVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAID 97
                              +  +I SA ++F+ +   DVVSW  +ISG ++ G +KEA++
Sbjct: 125 DRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALE 184

Query: 98  MF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
           +F      +V+P+  T+V+VLSAC+   S +LG+ +H+    +   +N+ + NA++D Y 
Sbjct: 185 LFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYS 244

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           +CG + +   LF  +  ++VVSW T+IGGY      KEA+ +FQEM ++ E+ PN+ T+V
Sbjct: 245 KCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGES-PNDVTIV 303

Query: 215 NVLSACSSISALSFGKYVHSYISTRY-DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 273
           ++L AC+ + A+  G+++H YI  +  D++ +  +  ++I+MY KCGD+  A QVFN + 
Sbjct: 304 SILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSML 363

Query: 274 YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI 333
           +K   SW+ +I G AM+G       LFS M  N + PDD+TF+ L+SACSH G +D G  
Sbjct: 364 HKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRH 423

Query: 334 LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           +FK+M+  Y+I P+++HY C++D+ G +GL +EA+  I+ MP+E +  +W +LL ACR H
Sbjct: 424 IFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRH 483

Query: 394 RNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSW 453
            N E+ +   ++L+  +  + G++ L+SN +A A  W++  K+R  +   G+KK  GCS 
Sbjct: 484 GNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSS 543

Query: 454 IEVNPSI 460
           IE++  +
Sbjct: 544 IEIDSEV 550



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 105/233 (45%), Gaps = 32/233 (13%)

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224
           +F  + + N + W TM+ GYA       A+ ++  M  +    PN  T   +L +C+   
Sbjct: 22  VFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVM-ISLGLLPNSYTFPFLLKSCAKSK 80

Query: 225 ALSFGKYVHSYI---STRYDLSV-SNLVG--------------------------NAVIN 254
           A   G+ +H ++       DL V ++L+                            A+I 
Sbjct: 81  AFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALIT 140

Query: 255 MYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVT 314
            Y   G++  A ++F+ +  KD +SW+ +ISG A  G  ++AL+LF  M+   V PD+ T
Sbjct: 141 GYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGT 200

Query: 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
            + ++SAC+    V+ G  +   +   +     ++    ++D+Y + G +E A
Sbjct: 201 MVTVLSACAQSRSVELGRQVHSWIDD-HGFGSNLKIVNALIDLYSKCGQVETA 252


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 173/462 (37%), Positives = 277/462 (59%), Gaps = 7/462 (1%)

Query: 3   SCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIF 62
           +CP+  + +T   ALK+CS          + A+ ++ G + D F+ +SL+H Y +  D+ 
Sbjct: 115 ACPA--DQHTAACALKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVA 172

Query: 63  SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACS 119
           +A  +F++     VV W  I++   K G   E ++MF G   + V  +  TLVSV++AC 
Sbjct: 173 AARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACG 232

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
            +   KLGK +  H        N  L  A++D Y +CG +     LF  M  R+VV+W+ 
Sbjct: 233 RIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSA 292

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           MI GY +   C+EA+ +F EM+  +  EPN+ T+V+VLSAC+ + AL  GK+VHSY+  R
Sbjct: 293 MISGYTQADQCREALGLFSEMQLAR-VEPNDVTMVSVLSACAVLGALETGKWVHSYVR-R 350

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
             LS++ ++G A+++ Y KCG +  A++ F  +  K+  +W+ +I G+A NG GR+AL+L
Sbjct: 351 KRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALEL 410

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
           FS M    + P DVTFI ++ ACSH  LV++G   F +M+  Y I P+++HY C+VD+ G
Sbjct: 411 FSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLG 470

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFAL 419
           RAGL++EA  FIR MPIE    +W ALL++C +HRN  + +   + +++      G + L
Sbjct: 471 RAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVL 530

Query: 420 MSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           +SN +A A +W+D   +R E++  G++K  GCS IE++  +F
Sbjct: 531 LSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGVVF 572



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 151/310 (48%), Gaps = 9/310 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    +++  T    + AC      +    +  HV E G   +  +  +L+  Y    +
Sbjct: 212 MLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGE 271

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           I  A ++F+ +   DVV+W+ +ISG ++    +EA+ +F  +    V+PN  T+VSVLSA
Sbjct: 272 IGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSA 331

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C+ L + + GK +H++  R       IL  A++DFY +CG +      F  MP +N  +W
Sbjct: 332 CAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTW 391

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
           T +I G A  G  +EA+ +F  M +    EP + T + VL ACS    +  G+     ++
Sbjct: 392 TALIKGMATNGRGREALELFSSMREAG-IEPTDVTFIGVLMACSHSCLVEEGRRHFDSMA 450

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDKISWSTVISGLAMN---GCG 293
             Y +         ++++  + G V  A Q +  M    + + W  ++S  A++   G G
Sbjct: 451 RDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIG 510

Query: 294 RQAL-QLFSL 302
            +AL Q+ SL
Sbjct: 511 EEALKQIISL 520


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  338 bits (866), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 168/448 (37%), Positives = 274/448 (61%), Gaps = 3/448 (0%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           YTF   LKAC+     Q+  ++H   ++ G L D+++QNSLLHFY        A ++F+ 
Sbjct: 106 YTFPVVLKACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDE 165

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAI 130
           ++  DVVSWT +ISG  + G   EAI++F  +DV PN  T VSVL AC  +    +GK +
Sbjct: 166 MLVRDVVSWTGLISGYVRTGLFDEAINLFLKMDVVPNVATFVSVLVACGRMGYLSMGKGV 225

Query: 131 HAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFC 190
           H    +      +++ NA++D Y++C  L     LF ++P R++VSWT++I G  +    
Sbjct: 226 HGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQP 285

Query: 191 KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGN 250
           K+++ +F +M+ +   EP+   L +VLSAC+S+ AL +G++V  YI  R  +     +G 
Sbjct: 286 KDSLELFYDMQISG-VEPDRIILTSVLSACASLGALDYGRWVQEYIE-RQGIEWDIHIGT 343

Query: 251 AVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP 310
           A+++MY KCG + +A+ +FN +  ++  +W+ ++ GLAM+G G +AL+ F LMI   + P
Sbjct: 344 ALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRP 403

Query: 311 DDVTFIALISACSHGGLVDQGLILFKAM-STVYEIVPQMQHYACVVDMYGRAGLLEEAEA 369
           ++VTF+A+++AC H GLV +G   F  M S  +   P+++HY C++D+  RAGLL+EA  
Sbjct: 404 NEVTFLAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYK 463

Query: 370 FIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADR 429
           FIR MP+  +  +WGALL+AC+ + N E+   I   L+  K    G + L+SN +A  +R
Sbjct: 464 FIRNMPLPPDVLIWGALLSACKANGNVELSQEILSHLLELKSQDSGVYVLLSNIYATNER 523

Query: 430 WEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           W+D  ++R  ++  G++K  G S IEV+
Sbjct: 524 WDDVTRVRRLMKDKGIRKFPGSSVIEVD 551



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/375 (30%), Positives = 187/375 (49%), Gaps = 26/375 (6%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP---------DVVSWTT 81
           +IHAH+I  G LHD F+ +        V + F  H  F    F            + + T
Sbjct: 23  QIHAHLIASGLLHDEFVLSK-------VSEFFGKHIGFVDYAFDFLNQTDLHVGTLPYNT 75

Query: 82  IISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNL 138
           +I+  +     K A  ++    G    P+  T   VL AC+  +  + G+ +H  +++  
Sbjct: 76  LIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKMG 135

Query: 139 NENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQ 198
              ++ + N++L FY  CG     G +F +M  R+VVSWT +I GY   G   EA+++F 
Sbjct: 136 FLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFL 195

Query: 199 EMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVK 258
           +M+      PN AT V+VL AC  +  LS GK VH  +  R    +  +VGNA+++MYVK
Sbjct: 196 KMDVV----PNVATFVSVLVACGRMGYLSMGKGVHGLVYKR-AFGIGLVVGNALVDMYVK 250

Query: 259 CGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIAL 318
           C  +  A ++F+ L  +D +SW+++ISGL      + +L+LF  M I+ V PD +   ++
Sbjct: 251 CECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSV 310

Query: 319 ISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEA 378
           +SAC+  G +D G  + + +     I   +     +VDMY + G +E A      +P   
Sbjct: 311 LSACASLGALDYGRWVQEYIER-QGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRN 369

Query: 379 EWSVWGALLNACRIH 393
            ++ W ALL    +H
Sbjct: 370 IFT-WNALLGGLAMH 383


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  337 bits (865), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 178/457 (38%), Positives = 276/457 (60%), Gaps = 8/457 (1%)

Query: 4   CPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFS 63
           CP   + +T   ALK+CS          I A+ ++ G + D F+ +SL+H Y + +D+ +
Sbjct: 116 CP---DQHTVACALKSCSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAA 172

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSS 120
           A  +F++V    VV W  II+   K G   E ++MF G   + V  +  TLVSV++AC  
Sbjct: 173 AQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGR 232

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           +   KLGK +  +        N  L  A++D Y +CG L     LF  M  R+VV+W+ M
Sbjct: 233 IGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAM 292

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           I GY +   C+EA+++F EM+   E EPN+ T+V+VLSAC+ + AL  GK+VHSYI  R 
Sbjct: 293 ISGYTQADQCREALALFSEMQ-LAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIR-RK 350

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
            LS++ ++G A+++ Y KCG +  A++ F  +  K+  +W+ +I G+A NG GR+AL+LF
Sbjct: 351 RLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELF 410

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
           S M   ++ P DVTFI ++ ACSH  LV++G   F +M+  Y I P+ +HY CVVD+ GR
Sbjct: 411 SSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGR 470

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           AGL++EA  FIR MPIE    +W ALL++C +H+N E+ +   + +V+      G + L+
Sbjct: 471 AGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIVSLNPSHSGDYILL 530

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           SN +A   +W++   IR E++  G++K  GCS IE++
Sbjct: 531 SNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELD 567



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 153/310 (49%), Gaps = 9/310 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    +++  T    + AC      +    +  +V E G + +  +  +L+  Y    +
Sbjct: 211 MLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGE 270

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           +  A ++F+ +   DVV+W+ +ISG ++    +EA+ +F  +   +V+PN  T+VSVLSA
Sbjct: 271 LGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSA 330

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C+ L + + GK +H++  R      IIL  A++DFY +CG +      F  MP +N  +W
Sbjct: 331 CAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTW 390

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
           T +I G A  G  +EA+ +F  M K    EP + T + VL ACS    +  G+     ++
Sbjct: 391 TALIKGMATNGRGREALELFSSMRKAS-IEPTDVTFIGVLMACSHSCLVEEGRRHFDSMT 449

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDKISWSTVISGLAMNG---CG 293
             Y +         V+++  + G +  A Q +  M    + + W  ++S  A++     G
Sbjct: 450 QDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIG 509

Query: 294 RQAL-QLFSL 302
            +AL Q+ SL
Sbjct: 510 EEALKQIVSL 519


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  337 bits (864), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 170/455 (37%), Positives = 274/455 (60%), Gaps = 5/455 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    +  C+     ++  +IH + I  G   D+ + N L++ Y    ++ +AH++F
Sbjct: 220 NSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLF 279

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHK 125
             +   DV SW  II G S    H EA+  F  + V   KPN+ T+VSVL AC+ L + +
Sbjct: 280 ERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALE 339

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ IH +++R+  E+N ++ NA+++ Y +CG++ S   LF +MPK+NVV+W  +I GY+
Sbjct: 340 QGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYS 399

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G   EA+++F EM+  +  +P+   +V+VL AC+   AL  GK +H Y + R     +
Sbjct: 400 QHGHPHEALALFIEMQ-AQGIKPDSFAIVSVLPACAHFLALEQGKQIHGY-TIRSGFESN 457

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
            +VG  ++++Y KCG+V  A ++F  +  +D +SW+T+I    ++G G  AL LFS M  
Sbjct: 458 VVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQE 517

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
                D + F A+++ACSH GLVDQGL  F+ M + Y + P+++HYAC+VD+ GRAG L+
Sbjct: 518 TGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLD 577

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EA   I+ M +E + +VWGALL ACRIH N E+ ++  + L      + G + L+SN +A
Sbjct: 578 EANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYA 637

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            A RWED  K+R  ++  G+KK+ GCS + V+  +
Sbjct: 638 EAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDV 672



 Score =  221 bits (562), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 126/403 (31%), Positives = 222/403 (55%), Gaps = 19/403 (4%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           F   +KAC      Q   ++H  +I  G   D+ +  +L   Y     + +A Q+F+ + 
Sbjct: 123 FLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMP 182

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHKLGKA 129
             DVVSW  II+G S+ G   EA+ +F  + V   KPN++TLVSV+  C+ L++ + GK 
Sbjct: 183 KRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQ 242

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           IH +++R+  E+++++ N +++ Y +CG++ +   LF +MP R+V SW  +IGGY+    
Sbjct: 243 IHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQ 302

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
             EA++ F  M+  +  +PN  T+V+VL AC+ + AL  G+ +H Y + R     +++VG
Sbjct: 303 HHEALAFFNRMQ-VRGIKPNSITMVSVLPACAHLFALEQGQQIHGY-AIRSGFESNDVVG 360

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
           NA++NMY KCG+V  A ++F  +  K+ ++W+ +ISG + +G   +AL LF  M    + 
Sbjct: 361 NALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIK 420

Query: 310 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV----VDMYGRAGLLE 365
           PD    ++++ AC+H   ++QG  +       Y I    +    V    VD+Y + G + 
Sbjct: 421 PDSFAIVSVLPACAHFLALEQGKQIHG-----YTIRSGFESNVVVGTGLVDIYAKCGNVN 475

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDRIRQ 404
            A+     MP E +   W  ++ A  IH + E    +F ++++
Sbjct: 476 TAQKLFERMP-EQDVVSWTTMILAYGIHGHGEDALALFSKMQE 517



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 178/332 (53%), Gaps = 9/332 (2%)

Query: 66  QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLV 122
           Q   + +  + V W   I G  K GF  +A+ ++  +    + P+    +SV+ AC S  
Sbjct: 75  QFTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQS 134

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
             + G+ +H   +    E+++I+  A+   Y +CGSL +   +F +MPKR+VVSW  +I 
Sbjct: 135 DLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIA 194

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
           GY++ G   EA+++F EM+     +PN +TLV+V+  C+ + AL  GK +H Y + R  +
Sbjct: 195 GYSQNGQPYEALALFSEMQ-VNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCY-AIRSGI 252

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
               LV N ++NMY KCG+V  A ++F  +  +D  SW+ +I G ++N    +AL  F+ 
Sbjct: 253 ESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNR 312

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFK-AMSTVYEIVPQMQHYACVVDMYGRA 361
           M +  + P+ +T ++++ AC+H   ++QG  +   A+ + +E    + +   +V+MY + 
Sbjct: 313 MQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGN--ALVNMYAKC 370

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           G +  A      MP +     W A+++    H
Sbjct: 371 GNVNSAYKLFERMP-KKNVVAWNAIISGYSQH 401


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 176/487 (36%), Positives = 291/487 (59%), Gaps = 38/487 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YT+   LK  +     +   E+H H+++ G   ++F+QN+L+H Y    ++  A  +F
Sbjct: 118 DEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVF 177

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           +     DVV+W  +ISG ++     E++ +F  ++   V P++ TLVSVLSACS L    
Sbjct: 178 DRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLN 237

Query: 126 LGKAIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASC--------------------GY 164
           +GK +H + +++L  E   +L+NA++D Y  CG + +                     G+
Sbjct: 238 VGKRVHRY-VKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGF 296

Query: 165 L-----------FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATL 213
                       F KMP+R+ VSWT MI GY +    KE +S+F+EM+     +P+E T+
Sbjct: 297 TNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAAN-IKPDEFTM 355

Query: 214 VNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 273
           V++L+AC+ + AL  G+++ +YI  + ++ + + VGNA+I+MY  CG+V  AI++FN + 
Sbjct: 356 VSILTACAHLGALELGEWIKAYID-KNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMP 414

Query: 274 YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI 333
           ++DKISW+ VI GLA+NG G +AL +FS M+  ++ PD+VT I ++ AC+H G+VD+G  
Sbjct: 415 HRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKK 474

Query: 334 LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
            F  M+T + I P + HY C+VD+ GRAG L+EA   I+ MP++    VWG+LL ACR+H
Sbjct: 475 FFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVH 534

Query: 394 RNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSW 453
           R++EM +   Q ++  +  +   + L+ N +A  +RWE  +++R  +   G+KK  GCS 
Sbjct: 535 RDEEMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSL 594

Query: 454 IEVNPSI 460
           IE+N S+
Sbjct: 595 IEMNGSV 601



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 112/415 (26%), Positives = 196/415 (47%), Gaps = 45/415 (10%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVT--VKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           +IH+  I  G + +  +   ++ F     + D+  A  +F+++  P+   W  +I G S+
Sbjct: 37  QIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSR 96

Query: 89  CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
            G    A+ M+C +    V P+  T   +L   +   + K G+ +H H ++    +N+ +
Sbjct: 97  VGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFV 156

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            NA++  Y   G ++    +F +  K +VV+W  MI GY       E++ +F EME+ + 
Sbjct: 157 QNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMR- 215

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS--NLVGNAVINMYVKCGDVG 263
             P+  TLV+VLSACS +  L+ GK VH Y+    DL +    ++ NA+I+MY  CGD+ 
Sbjct: 216 VLPSSITLVSVLSACSKLKDLNVGKRVHRYVK---DLKIEPVRVLENALIDMYAACGDMD 272

Query: 264 IAIQVFNMLAYKDKISWSTVISG---LAMNGCGR-------------------------- 294
            A+ +F+ +  +D ISW+ +++G   L   G  R                          
Sbjct: 273 TALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNR 332

Query: 295 --QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
             + L LF  M    + PD+ T +++++AC+H G ++ G  + KA     EI        
Sbjct: 333 FKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWI-KAYIDKNEIKIDSFVGN 391

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDRIRQDL 406
            ++DMY   G +E+A      MP   + S W A++    I+   +E  D   Q L
Sbjct: 392 ALIDMYFNCGNVEKAIRIFNAMPHRDKIS-WTAVIFGLAINGYGEEALDMFSQML 445


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 172/492 (34%), Positives = 292/492 (59%), Gaps = 36/492 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVT--- 57
           M+S     N YTF   LKAC+ +   ++  +IH HV++ G   D+++  SL+  YV    
Sbjct: 94  MISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGR 153

Query: 58  ---VKDIF-------------------------SAHQIFNSVVFPDVVSWTTIISGLSKC 89
               + +F                         SA ++F+ +   DVVSW  +ISG ++ 
Sbjct: 154 XEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAET 213

Query: 90  GFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
           G +KEA+++F      +VKP+ +T+V+VLSAC+   S +LG+ +H+    +   +N+ + 
Sbjct: 214 GNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIV 273

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           NA++D YI+CG + +   LF  +  ++V+SW T+IGGY      KEA+ +FQEM ++ E+
Sbjct: 274 NALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES 333

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYD-LSVSNLVGNAVINMYVKCGDVGIA 265
            PNE T++++L AC+ + A+  G+++H YI  R   +S  + +  ++I+MY KCGD+  A
Sbjct: 334 -PNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAA 392

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
            QVF+ +  +   SW+ +I G AM+G    A  +FS M  + + PDD+TF+ L+SACSH 
Sbjct: 393 QQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHS 452

Query: 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 385
           G++D G  +F++M+  Y+I P+++HY C++D+ G +GL +EAE  I  M ++ +  +W +
Sbjct: 453 GMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCS 512

Query: 386 LLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445
           LL AC++H N E+ +   Q+L+  +  + G++ L+SN +A A RW +  K R  +   G+
Sbjct: 513 LLKACKMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGM 572

Query: 446 KKKTGCSWIEVN 457
           KK  GCS IE++
Sbjct: 573 KKVPGCSSIEID 584



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 126/435 (28%), Positives = 223/435 (51%), Gaps = 46/435 (10%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVT---VKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           IHA +I+ G  +  +  + L+ F V       +  A  +F+S+  P+++ W T+  G + 
Sbjct: 21  IHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNLLIWNTMFRGHAL 80

Query: 89  CGFHKEAIDMF-CGIDVK--PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
                 A+ ++ C I +   PN+ T   +L AC+   + + G+ IH H L+   + ++ +
Sbjct: 81  SSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDLYV 140

Query: 146 DNAILDFYIRCG-------------------------SLASCGY------LFVKMPKRNV 174
             +++  Y++ G                           AS GY      +F ++P ++V
Sbjct: 141 HTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDV 200

Query: 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
           VSW  +I GYAE G  KEA+ +F+EM KT   +P+E+T+V VLSAC+  +++  G+ VHS
Sbjct: 201 VSWNALISGYAETGNYKEALELFKEMMKTN-VKPDESTMVTVLSACAQSASIELGRQVHS 259

Query: 235 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
           +I      S   +V NA+I++Y+KCG+V  A  +F  L+YKD ISW+T+I G       +
Sbjct: 260 WIDDHGFGSNLKIV-NALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYK 318

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY-AC 353
           +AL LF  M+ +   P++VT ++++ AC+H G +D G  +   +    + V         
Sbjct: 319 EALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTS 378

Query: 354 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFD---RIRQDLVNK 409
           ++DMY + G +E A+     M +    S W A++    +H R +  FD   R+R+D +  
Sbjct: 379 LIDMYAKCGDIEAAQQVFDSM-LNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEP 437

Query: 410 KGVS-VGTFALMSNT 423
             ++ VG  +  S++
Sbjct: 438 DDITFVGLLSACSHS 452


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 177/492 (35%), Positives = 289/492 (58%), Gaps = 36/492 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYV---- 56
           M+S   S N YTF    K+C+ +   Q+  +IHA +++YG   D+ +  SL+  Y     
Sbjct: 69  MISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGI 128

Query: 57  -----------TVKDIFS----------------AHQIFNSVVFPDVVSWTTIISGLSKC 89
                      + +D+ S                A ++F+ +   DVVSW  +ISG ++ 
Sbjct: 129 VEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEI 188

Query: 90  GFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
           G +KEA+++F     +DVKP+ +T+ +VLS C+   + +LG+ IH+    +   +N+ L 
Sbjct: 189 GRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLV 248

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           NA++D Y +CG +     LF  +  ++V+SW T+IGGYA     KEA+ VFQEM K  E 
Sbjct: 249 NALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGET 308

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIA 265
            PN+ T++++L AC+ + A+  G+++H YI  +    ++N  +  ++I+MY KCG++  A
Sbjct: 309 -PNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAA 367

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
            QVF+ +  K   S + +I G AM+G    A  L S M  + + PDD+TF+ L+SACSH 
Sbjct: 368 NQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHA 427

Query: 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 385
           GL D G  +FK+M+  Y I P+++HY C++D+ GR+GL +EAE  I  M +E +  +WG+
Sbjct: 428 GLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGS 487

Query: 386 LLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445
           LL AC+IH+N E+ + I Q L+  +  + G++ L+SN +A + RW+D  ++R  +   GL
Sbjct: 488 LLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGL 547

Query: 446 KKKTGCSWIEVN 457
           KK  GCS IE++
Sbjct: 548 KKVPGCSSIEID 559



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 115/256 (44%), Gaps = 37/256 (14%)

Query: 149 ILDFYIRCGSLASCGY---LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
           +LDF I         Y   +F  + + N +SW TMI G+A       A++++  M  +  
Sbjct: 15  LLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYM-ISLG 73

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
             PN  T   +  +C+   A   GK +H+ I  +Y L+V   V  ++I+MY + G V  A
Sbjct: 74  LSPNSYTFPFLFKSCAKSKAAQEGKQIHAQI-LKYGLTVDLHVHTSLISMYAQNGIVEDA 132

Query: 266 IQVFNMLAY-------------------------------KDKISWSTVISGLAMNGCGR 294
            +VF+  ++                               KD +SW+ +ISG A  G  +
Sbjct: 133 HKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYK 192

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
           +AL+LF+ M+   V PD+ T   ++S C+H G V+ G  +   +   +     ++    +
Sbjct: 193 EALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDN-HGFGSNLKLVNAL 251

Query: 355 VDMYGRAGLLEEAEAF 370
           +D+Y + G +E A   
Sbjct: 252 IDLYSKCGEMERAHGL 267


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 181/490 (36%), Positives = 288/490 (58%), Gaps = 41/490 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +++T+    KA        KA ++   V + G   D +++NSL+  Y  +        +F
Sbjct: 136 DNFTYPFVFKAIGYLGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLF 195

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLVSH 124
           + +   DV+SW  +ISG  KC   ++AI++FC +     + P+  T+VS LSAC++L   
Sbjct: 196 DEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRL 255

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           +LGK IH H +R+  +   I+ NA+LD Y +CG L+    +F +MP +NV+ WTTM+ GY
Sbjct: 256 ELGKKIH-HYVRDNVKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGY 314

Query: 185 AERGFCKEA-------------------------------VSVFQEMEKTKEAEPNEATL 213
           A  G  +EA                               V++F+EM+  ++ +P++  +
Sbjct: 315 ANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQ-IRKVKPDKFIV 373

Query: 214 VNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 273
           V++L+ C+   A+  GK++H +I     + +  +VG A+I MY KCG +  A+++F  L 
Sbjct: 374 VSLLTGCAQTGAIEQGKWIHEFIDEN-RIPIDAVVGTALIEMYAKCGFIEKALEIFYGLR 432

Query: 274 YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI 333
            KD  SW+++I GLAMNG   +AL+LFS M    V PDD+TFI ++SACSHGGLV++G  
Sbjct: 433 VKDTASWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSACSHGGLVEEGRK 492

Query: 334 LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW---SVWGALLNAC 390
            F +M   Y+I P+++HY C+VD+ GRAGLL EAE  I+++P E +     ++G+LL+AC
Sbjct: 493 FFNSMRMEYQIKPKVEHYGCLVDLLGRAGLLNEAEELIKKIPDENKAITVPLYGSLLSAC 552

Query: 391 RIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTG 450
           RI+ N EM +R+ + LV  +        L++N +A ADRWED  K+R +++ +G+KK  G
Sbjct: 553 RIYGNVEMGERVAKQLVKFESSDSSVHTLLANIYAFADRWEDVTKVRRKMKDLGVKKTPG 612

Query: 451 CSWIEVNPSI 460
           CS IEV+  I
Sbjct: 613 CSSIEVDSII 622


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  334 bits (857), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 171/485 (35%), Positives = 291/485 (60%), Gaps = 38/485 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVT------VKDIF 62
           N YTF   LK+C+ +   ++  +IH HV++ G+  D+++  SL+  YV        + +F
Sbjct: 87  NCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVF 146

Query: 63  -------------------------SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAID 97
                                    SA ++F+ +   DVVSW  +ISG ++ G +KEA++
Sbjct: 147 DQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALE 206

Query: 98  MF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
           +F      +V+P+ +T+VSV+SAC+   S +LG+ +H+    +   +N+ + NA++D YI
Sbjct: 207 LFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYI 266

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           +CG + +   LF  +  ++V+SW T+IGGY      KEA+ +FQEM ++ E+ PN+ T++
Sbjct: 267 KCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES-PNDVTML 325

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGN--AVINMYVKCGDVGIAIQVFNML 272
           ++L AC+ + A+  G+++H YI+ R    V+N   +  ++I+MY KCGD+  A QVF+ +
Sbjct: 326 SILPACAHLGAIEIGRWIHVYINKRLK-GVANASSHRTSLIDMYAKCGDIEAAQQVFDSI 384

Query: 273 AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL 332
             +   SW+ +I G AM+G    A  +FS M  N + PDD+TF+ L+SACSH G++D G 
Sbjct: 385 LNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGR 444

Query: 333 ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI 392
            +F++M   Y+I P+++HY C++D+ G +GL +EAE  I  M +E +  +W +LL AC++
Sbjct: 445 HIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKM 504

Query: 393 HRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCS 452
           H N E+ +   Q+L+  +  + G++ L+SN +A A RW +  KIR  +   G+KK  GCS
Sbjct: 505 HGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCS 564

Query: 453 WIEVN 457
            IE++
Sbjct: 565 SIEID 569



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 122/275 (44%), Gaps = 39/275 (14%)

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGY---LFVKMPKRNVVSWTTMIGGY 184
           + IHA  ++    N     + +++F +         Y   +F  + + N++ W TM  G+
Sbjct: 4   RMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 63

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLS 243
           A       A+ ++  M  +    PN  T   +L +C+   A   G+ +H ++    YDL 
Sbjct: 64  ALSSDPVSALYLYVCM-ISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLD 122

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAY----------------------------- 274
           +   V  ++I+MYV+ G +  A +VF+  ++                             
Sbjct: 123 L--YVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEI 180

Query: 275 --KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL 332
             KD +SW+ +ISG A  G  ++AL+LF  M+   V PD+ T ++++SAC+    ++ G 
Sbjct: 181 PIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGR 240

Query: 333 ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
            +   +   +     ++    ++D+Y + G +E A
Sbjct: 241 QVHSWIDD-HGFGSNLKIVNALIDLYIKCGEVETA 274


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  333 bits (855), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 169/452 (37%), Positives = 273/452 (60%), Gaps = 5/452 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N++TF   LKAC+     Q  ++IH  V++ G   D+F++ SL+  Y     +  AH++F
Sbjct: 111 NNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVF 170

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHK 125
           + +   +VVSWT IISG    G  +EAIDMF     +++ P++ T+V VLSAC+ L    
Sbjct: 171 DDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLN 230

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ IH   +      N+ +  +++D Y +CG++     +F  MP++++VSW  MI GYA
Sbjct: 231 SGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYA 290

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G  KEA+ +F +M++ +  +P+  T+V VLSAC+ + AL  G++V   +  R +   +
Sbjct: 291 LNGLPKEAIDLFLQMQR-ENVKPDCYTVVGVLSACARLGALELGEWVSGLVD-RNEFLYN 348

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
            ++G A+I++Y KCG +  A +VF  +  KD++ W+ +ISGLAMNG  + +  LF  +  
Sbjct: 349 PVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEK 408

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             + PD  TFI L+  C+H GLVD+G   F +M   + + P ++HY C+VD+ GRAGLL+
Sbjct: 409 LGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLD 468

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EA   IR MP+EA   VWGALL ACRIHR+ ++ +   + L+  +  + G + L+SN ++
Sbjct: 469 EAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYS 528

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
              +W++  K+R  +    ++K  GCSWIEV+
Sbjct: 529 ANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVD 560



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/355 (28%), Positives = 182/355 (51%), Gaps = 7/355 (1%)

Query: 38  EYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAID 97
            +G  HD ++ N +L       D      +F+ +  P++  W T+I GL       +AI+
Sbjct: 39  RFGLCHDNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIE 98

Query: 98  MFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
            +  +  +   PN  T   VL AC+ L+  +LG  IH   ++   + ++ +  +++  Y 
Sbjct: 99  FYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYA 158

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           +CG L     +F  +P +NVVSWT +I GY   G  +EA+ +F+ + +   A P+  T+V
Sbjct: 159 KCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLA-PDSFTIV 217

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
            VLSAC+ +  L+ G+++H  I     +  +  VG ++++MY KCG++  A  VF+ +  
Sbjct: 218 RVLSACTQLGDLNSGEWIHKCI-MEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPE 276

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           KD +SW  +I G A+NG  ++A+ LF  M    V PD  T + ++SAC+  G ++ G  +
Sbjct: 277 KDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWV 336

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
              +    E +        ++D+Y + G +  A    + M  E +  VW A+++ 
Sbjct: 337 -SGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMK-EKDRVVWNAIISG 389


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  333 bits (855), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 169/484 (34%), Positives = 292/484 (60%), Gaps = 36/484 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYV---------TVK 59
           N YTF   LK+C+ +   ++  ++H  V+++G   D++I  SL+  YV          V 
Sbjct: 102 NSYTFPFLLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVX 161

Query: 60  D----------------------IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAID 97
           D                      I SAH++F+ +   DVVSW   ISG ++ G +KEA++
Sbjct: 162 DKSSHRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALE 221

Query: 98  MFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
           +F  +   +V+P+ +T+V+VLSAC+   S +LG+ +H+    +    N+ + NA++D Y 
Sbjct: 222 LFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYS 281

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           +CG L +   LF  +  ++V+SW T+IGGY      KEA+ +FQ+M ++ E +PN+ T++
Sbjct: 282 KCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGE-KPNDVTML 340

Query: 215 NVLSACSSISALSFGKYVHSYISTRYD-LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 273
           ++LSAC+ + A+  G+++H YI  R   ++ ++ +  ++I+MY KCGD+  A QVF+ + 
Sbjct: 341 SILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSML 400

Query: 274 YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI 333
            +   SW+ +I G AM+G    A  +FS M  N + PDD+TF+ L+SACSH G++D G  
Sbjct: 401 NRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRH 460

Query: 334 LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           +F++M+  Y+++P+++HY C++D+ G +GL +EAE  I  M +E +  +W +LL AC++H
Sbjct: 461 IFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMH 520

Query: 394 RNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSW 453
            N E+ +   Q+L+  +  + G++ L+SN +A A+RW +  K R  +   G+KK  GCS 
Sbjct: 521 GNVELGESYAQNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSS 580

Query: 454 IEVN 457
           IE++
Sbjct: 581 IEID 584



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 114/435 (26%), Positives = 212/435 (48%), Gaps = 46/435 (10%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVT---VKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           IHA +I+ G  +  +  + LL   V       +  A  +F+++  P ++ W T+  G + 
Sbjct: 21  IHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQEPXLLIWNTMFRGHAL 80

Query: 89  CGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
                 A+ ++     + + PN+ T   +L +C+   + K G+ +H   L+   + ++ +
Sbjct: 81  SSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYI 140

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFC--------------- 190
             +++  Y++ G L     +  K   R+VVS+T +I GYA RG                 
Sbjct: 141 HTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDEIPVKDV 200

Query: 191 ----------------KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
                           KEA+ +F++M KT    P+E+T+V VLSAC+   ++  G+ VHS
Sbjct: 201 VSWNAXISGYAETGNYKEALELFKKMMKTN-VRPDESTMVTVLSACAQSGSIELGRQVHS 259

Query: 235 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
           +I+  +    +  + NA+I++Y KCG++  A  +F  L+ KD ISW+T+I G       +
Sbjct: 260 WIND-HGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYK 318

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY-AC 353
           +AL LF  M+ +   P+DVT ++++SAC+H G +D G  +   +    + V         
Sbjct: 319 EALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTS 378

Query: 354 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFD---RIRQDLVNK 409
           ++DMY + G +E A+     M +    S W A++    +H R +  FD   R+R++ +  
Sbjct: 379 LIDMYAKCGDIEAAQQVFDSM-LNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEP 437

Query: 410 KGVS-VGTFALMSNT 423
             ++ VG  +  S++
Sbjct: 438 DDITFVGLLSACSHS 452



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 125/290 (43%), Gaps = 40/290 (13%)

Query: 112 VSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGY---LFVK 168
           +S+L  C +L S ++   IHA  ++    N     + +L+  +         Y   +F  
Sbjct: 6   LSLLHXCKTLQSLRI---IHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDT 62

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           + +  ++ W TM  G+A       A+ ++  M       PN  T   +L +C+   A   
Sbjct: 63  IQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLL-PNSYTFPFLLKSCAKSXAFKE 121

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV-------------------- 268
           G+ +H  +  ++   +   +  ++I+MYV+ G +  A +V                    
Sbjct: 122 GQQLHGQV-LKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYA 180

Query: 269 -----------FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIA 317
                      F+ +  KD +SW+  ISG A  G  ++AL+LF  M+   V PD+ T + 
Sbjct: 181 SRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVT 240

Query: 318 LISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           ++SAC+  G ++ G  +   ++  +     ++    ++D+Y + G LE A
Sbjct: 241 VLSACAQSGSIELGRQVHSWIND-HGFGXNLKIVNALIDLYSKCGELETA 289


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 176/491 (35%), Positives = 285/491 (58%), Gaps = 35/491 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYV---- 56
           ML C    N YTF   LK+C+     Q+  +IH HV++ G   D F+  SL++ Y     
Sbjct: 123 MLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGE 182

Query: 57  -----------TVKDIFS----------------AHQIFNSVVFPDVVSWTTIISGLSKC 89
                      +++D  S                A ++F  +   D VSW  +I+G ++ 
Sbjct: 183 LGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQS 242

Query: 90  GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
           G  +EA+  F  +   +V PN +T+V+VLSAC+   S +LG  + +    +   +N+ L 
Sbjct: 243 GRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLV 302

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           NA++D Y +CG L     LF  + +++++SW  MIGGY+     KEA+++F++M+++   
Sbjct: 303 NALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSN-V 361

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
           EPN+ T V++L AC+ + AL  GK++H+YI  ++    +  +  ++I+MY KCG++  A 
Sbjct: 362 EPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAK 421

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
           QVF  +  K   SW+ +ISGLAM+G    AL+LF  M      PDD+TF+ ++SACSH G
Sbjct: 422 QVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAG 481

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 386
           LV+ G   F +M   Y+I P++QHY C++D+ GRAGL +EAEA ++ M ++ + ++WG+L
Sbjct: 482 LVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSL 541

Query: 387 LNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446
           L ACR+H N E+ +   + L   +  + G + L+SN +A A RW+D  +IR ++   G+K
Sbjct: 542 LGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMK 601

Query: 447 KKTGCSWIEVN 457
           K  GCS IEV+
Sbjct: 602 KVPGCSSIEVD 612



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 132/446 (29%), Positives = 220/446 (49%), Gaps = 50/446 (11%)

Query: 5   PSSYNHYTFTQ---ALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYV--TVK 59
           P+S   Y   Q   +L   S     Q   +IH+ +I+ G  +  F  + L+ F       
Sbjct: 21  PTSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFG 80

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSV 114
           ++  A  +F S+  P+   W T+I G S       AID +     CG  V+PN+ T   +
Sbjct: 81  NLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCG--VEPNSYTFPFL 138

Query: 115 LSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC------------ 162
           L +C+ + + + GK IH H L+   E++  +  ++++ Y + G L               
Sbjct: 139 LKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDA 198

Query: 163 --------GY-----------LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
                   GY           LF ++P R+ VSW  MI GYA+ G  +EA++ FQEM++ 
Sbjct: 199 VSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRA 258

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
             A PNE+T+V VLSAC+   +L  G +V S+I      S   LV NA+I+MY KCGD+ 
Sbjct: 259 NVA-PNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLV-NALIDMYSKCGDLD 316

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
            A  +F  +  KD ISW+ +I G +     ++AL LF  M  + V P+DVTF++++ AC+
Sbjct: 317 KARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACA 376

Query: 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 383
           + G +D G  +   +   +  +     +  ++DMY + G +E A+     M  ++  S W
Sbjct: 377 YLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGS-W 435

Query: 384 GALLNACRIHRND----EMFDRIRQD 405
            A+++   +H +     E+F ++R +
Sbjct: 436 NAMISGLAMHGHANMALELFRQMRDE 461


>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
 gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
          Length = 583

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 171/450 (38%), Positives = 275/450 (61%), Gaps = 9/450 (2%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +TF   LKACS     ++  ++H  V++ G L D ++QNSL+  Y    D   A ++F+ 
Sbjct: 106 FTFPVLLKACSNFSGSREGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDE 165

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAI 130
           ++  DVVSW ++ISG  K G   EAI +F  +DV+P+  TLVSVL+AC+       GK I
Sbjct: 166 MLVRDVVSWNSLISGFMKAGHFDEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGI 225

Query: 131 HAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFC 190
           H    R   + N++L NA+LD Y++ G       +F ++P R++VSWT MI G  +    
Sbjct: 226 HGVIERRF-KVNLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHP 284

Query: 191 KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR---YDLSVSNL 247
           K+++ +F  M +T    P+   L +VLSAC+S+  L FG +VH YI+ R   +D+ +   
Sbjct: 285 KQSLELFSMM-RTLGISPDAIILTSVLSACASLGTLDFGTWVHEYINQRGIKWDIHI--- 340

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
            G A+++MY KCG + +A+++F  ++ ++  +W+ ++ GLAM+G   +AL LF +MII+ 
Sbjct: 341 -GTAIVDMYAKCGCIEMALKIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISG 399

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           V P+++TF+A+++AC H GLVD+G   F  MS +Y ++P+++HY C++D++ RAGLLEEA
Sbjct: 400 VKPNEITFLAILTACCHCGLVDEGRKYFDNMSKLYNLLPKLEHYGCMIDLFCRAGLLEEA 459

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
               R MP++ +  +WG LLNAC    N E+  RI+  ++       G F L+SN  A  
Sbjct: 460 VELARTMPMKPDVLIWGLLLNACTTVGNIELSHRIQDYILELDHDDSGVFVLLSNISAIN 519

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            RW +  ++R  ++  G++K  G S IEV+
Sbjct: 520 QRWSNVTRLRRLMKDRGVRKAPGSSVIEVD 549



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 191/374 (51%), Gaps = 25/374 (6%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDI--FSAHQIFNSVVFPDVVSWTTIISGLSK 88
           +IHA ++  G ++D F+ + ++ F+    +   ++   +           + ++I+G   
Sbjct: 23  QIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDYLEQGNTRLGSFPFNSLINGYVG 82

Query: 89  CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
             F + A+ ++  +      P+  T   +L ACS+    + G+ +H   ++     +  +
Sbjct: 83  GEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGVVVKLGLLADHYV 142

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            N+++  Y  CG  +  G +F +M  R+VVSW ++I G+ + G   EA+SVF  M    +
Sbjct: 143 QNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAISVFFRM----D 198

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
            EP+  TLV+VL+AC+    L  GK +H  I  R+ +++  ++GNA+++MYVK G    A
Sbjct: 199 VEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKVNL--VLGNAMLDMYVKNGCFYEA 256

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
             +F+ L  +D +SW+ +I+GL  +   +Q+L+LFS+M    + PD +   +++SAC+  
Sbjct: 257 KNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSACASL 316

Query: 326 GLVDQGLILFKAMSTVYEIVPQ------MQHYACVVDMYGRAGLLEEAEAFIREMPIEAE 379
           G +D G       + V+E + Q      +     +VDMY + G +E A      M     
Sbjct: 317 GTLDFG-------TWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQRNT 369

Query: 380 WSVWGALLNACRIH 393
           ++ W ALL    +H
Sbjct: 370 FT-WNALLCGLAMH 382



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 143/299 (47%), Gaps = 17/299 (5%)

Query: 111 LVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFY---IRCGSLASCGYLFV 167
           L+  +  C +L   ++ + IHA  + +    +  + + +++F+   +  G  A C YL  
Sbjct: 8   LLDSIKDCKNL---RIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYA-CDYLEQ 63

Query: 168 KMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 227
              +     + ++I GY    F + AVSV++ M +     P+  T   +L ACS+ S   
Sbjct: 64  GNTRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFV-PDMFTFPVLLKACSNFSGSR 122

Query: 228 FGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGL 287
            G+ VH  +  +  L   + V N++I  Y  CGD   A +VF+ +  +D +SW+++ISG 
Sbjct: 123 EGRQVHGVV-VKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGF 181

Query: 288 AMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 347
              G   +A+ +F  M +    P   T +++++AC+  G +  G  +   +   +++   
Sbjct: 182 MKAGHFDEAISVFFRMDVE---PSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKVNLV 238

Query: 348 MQHYACVVDMYGRAGLLEEAEAFIREMPIE--AEWSVW-GALLNACRIHRNDEMFDRIR 403
           + +   ++DMY + G   EA+    E+P      W++    L+ +    ++ E+F  +R
Sbjct: 239 LGN--AMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMR 295


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 166/484 (34%), Positives = 290/484 (59%), Gaps = 36/484 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YTF   LK+C+     ++ L+IH HV++ G+  D+++  SL+  YV  + +  AH++F
Sbjct: 62  NSYTFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVF 121

Query: 69  N-------------------------------SVVFPDVVSWTTIISGLSKCGFHKEAID 97
           +                                +   DVVSW  +ISG  + G +KEA++
Sbjct: 122 DRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALE 181

Query: 98  MF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
           +F      +V+P+ +T+V+V+SA +   S +LG+ +H+    +   +N+ + NA++DFY 
Sbjct: 182 LFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYS 241

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           +CG + +   LF+ +  ++V+SW  +IGGY      KEA+ +FQEM ++ E+ PN+ T++
Sbjct: 242 KCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGES-PNDVTML 300

Query: 215 NVLSACSSISALSFGKYVHSYISTRYD-LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 273
           ++L AC+ + A+  G+++H YI  R   ++ ++ +  ++I+MY KCGD+  A QVFN + 
Sbjct: 301 SILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSML 360

Query: 274 YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI 333
           +K   +W+ +I G AM+G    A  +FS M  N + PDD+TF+ L+SACSH G++D G  
Sbjct: 361 HKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRH 420

Query: 334 LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           +F++M+  Y+I P+++HY C++D+ G +GL +EAE  I  M +E +  +W +LL AC++H
Sbjct: 421 IFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMH 480

Query: 394 RNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSW 453
            N E+ ++  Q+L   +  + G++ L+SN +A A RW +  +IR  +   G+KK  GCS 
Sbjct: 481 GNVELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSS 540

Query: 454 IEVN 457
           IE++
Sbjct: 541 IEID 544



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 102/233 (43%), Gaps = 32/233 (13%)

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224
           +F  + + N++ W TM  G+A       A+ ++  M  +    PN  T   +L +C+ + 
Sbjct: 19  VFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCM-ISLGLLPNSYTFPFLLKSCAKLK 77

Query: 225 ALSFGKYVHSYI-STRYDLS-------VSNLVGN----------------------AVIN 254
           A   G  +H ++    Y+L        +S  V N                      A++ 
Sbjct: 78  ASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVT 137

Query: 255 MYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVT 314
            Y   G +  A  +F+ +  KD +SW+ +ISG    G  ++AL+LF  M+   V PD+ T
Sbjct: 138 GYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDEST 197

Query: 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
            + +ISA +  G ++ G  +   ++  +     ++    ++D Y + G +E A
Sbjct: 198 MVTVISASARSGSIELGRQVHSWIAD-HGFGSNLKIVNALIDFYSKCGEMETA 249



 Score = 38.9 bits (89), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 66/155 (42%), Gaps = 31/155 (20%)

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS- 323
           AI VF  +   + + W+T+  G A++     AL+L+  MI   + P+  TF  L+ +C+ 
Sbjct: 16  AISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAK 75

Query: 324 ----------HGGLVDQG--LILF------------KAMSTVYEIVPQMQH-----YACV 354
                     HG ++  G  L L+            + +   +++  +  H     Y  +
Sbjct: 76  LKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTAL 135

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           V  Y   G +E A     E+P++   S W A+++ 
Sbjct: 136 VTGYASRGYIESARNMFDEIPVKDVVS-WNAMISG 169


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 166/484 (34%), Positives = 288/484 (59%), Gaps = 36/484 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YTF   LK+C+ +   ++  +IH HV++ G   D+++  SL+  YV    +  AH++F
Sbjct: 90  NSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVF 149

Query: 69  NS-------------------------------VVFPDVVSWTTIISGLSKCGFHKEAID 97
           +                                +   DVVSW  +ISG ++ G +KEA++
Sbjct: 150 DESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALE 209

Query: 98  MFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
           +F  +   +V+P+ +T+V+V+SAC+   S +LG+ +H+    +   +N+ + NA++D Y 
Sbjct: 210 LFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYS 269

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           +CG L +   LF  +P ++V+SW T+IGGY      KEA+ +FQEM ++ E  PN+ T++
Sbjct: 270 KCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET-PNDVTML 328

Query: 215 NVLSACSSISALSFGKYVHSYISTRYD-LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 273
           ++L AC+ + A+  G+++H YI  R   ++ ++ +  ++I+MY KCGD+  A QVFN + 
Sbjct: 329 SILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSIL 388

Query: 274 YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI 333
           +K   SW+ +I G AM+G    +  +FS M  N + PDD+TF+ L+SACSH G++D G  
Sbjct: 389 HKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRH 448

Query: 334 LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           +F++M+  Y++ P+++HY C++D+ G +GL +EAE  I  M +E +  +W +LL AC++H
Sbjct: 449 IFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMH 508

Query: 394 RNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSW 453
            N E+ +   Q+L+  +  + G++ L+SN +A A RW +    R  +   G+KK  GCS 
Sbjct: 509 GNVELGESFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVPGCSS 568

Query: 454 IEVN 457
           IE++
Sbjct: 569 IEID 572



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 129/296 (43%), Gaps = 38/296 (12%)

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGY---LFVKMPKRNVVSWTTMIGGY 184
           + IHA  ++    N     + +++F I         Y   +F  + + N++ W TM  G+
Sbjct: 7   RMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 66

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           A       A+ ++  M  +    PN  T   +L +C+   A   G+ +H ++  +    +
Sbjct: 67  ALSSDPVSALKLYVCM-ISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHV-LKLGCDL 124

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVF------NMLAY------------------------ 274
              V  ++I+MYV+ G +  A +VF      ++++Y                        
Sbjct: 125 DLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIP 184

Query: 275 -KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI 333
            KD +SW+ +ISG A  G  ++AL+LF  M+   V PD+ T + ++SAC+  G ++ G  
Sbjct: 185 VKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQ 244

Query: 334 LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           +   +   +     ++    ++D+Y + G LE A      +P +   S W  L+  
Sbjct: 245 VHSWIDD-HGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVIS-WNTLIGG 298


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 170/485 (35%), Positives = 291/485 (60%), Gaps = 38/485 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVT------VKDIF 62
           N YTF   LK+C+ +   ++  +IH HV++ G+  D+++  SL+  YV        + +F
Sbjct: 102 NCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVF 161

Query: 63  -------------------------SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAID 97
                                    SA ++F+ +   DVVSW  +ISG ++ G +KEA++
Sbjct: 162 DQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALE 221

Query: 98  MF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
           +F      +V+P+ +T+VSV+SAC+   S +LG+ +H+    +   +N+ + NA++D YI
Sbjct: 222 LFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYI 281

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           +CG + +   LF  +  ++V+SW T+IGGY      KEA+ +FQEM ++ E+ PN+ T++
Sbjct: 282 KCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES-PNDVTML 340

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGN--AVINMYVKCGDVGIAIQVFNML 272
           ++L AC+ + A+  G+++H YI+ R    V+N   +  ++I+MY KCGD+  A QVF+ +
Sbjct: 341 SILPACAHLGAIEIGRWIHVYINKRLK-GVANASSHRTSLIDMYAKCGDIEAAQQVFDSI 399

Query: 273 AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL 332
             +   SW+ +I G AM+G    A  +FS M  N + PDD+TF+ L+SACSH G++D G 
Sbjct: 400 LNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGR 459

Query: 333 ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI 392
            +F++M   Y+I P+++HY C++D+ G +GL +EAE  I  M +E +  +W +LL AC++
Sbjct: 460 HIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKM 519

Query: 393 HRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCS 452
           + N E+ +   Q+L+  +  + G++ L+SN +A A RW +  KIR  +   G+KK  GCS
Sbjct: 520 YANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCS 579

Query: 453 WIEVN 457
            IE++
Sbjct: 580 SIEID 584



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 131/291 (45%), Gaps = 42/291 (14%)

Query: 112 VSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGY---LFVK 168
           +S+L  C +L S ++   IHA  ++    N     + +++F +         Y   +F  
Sbjct: 6   LSLLHNCKTLQSLRM---IHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFET 62

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           + + N++ W TM  G+A       A+ ++  M  +    PN  T   +L +C+   A   
Sbjct: 63  IQEPNLLIWNTMFRGHALSSDPVSALYLYVCM-ISLGLLPNCYTFPFLLKSCAKSKAFRE 121

Query: 229 GKYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY------------- 274
           G+ +H ++    YDL +   V  ++I+MYV+ G +  A +VF+  ++             
Sbjct: 122 GQQIHGHVLKLGYDLDL--YVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGY 179

Query: 275 ------------------KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFI 316
                             KD +SW+ +ISG A  G  ++AL+LF  M+   V PD+ T +
Sbjct: 180 ASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMV 239

Query: 317 ALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           +++SAC+    ++ G  +   +   +     ++    ++D+Y + G +E A
Sbjct: 240 SVVSACAQSASIELGRQVHSWIDD-HGFGSNLKIVNALIDLYIKCGEVETA 289


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 169/458 (36%), Positives = 270/458 (58%), Gaps = 37/458 (8%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           MLS     ++YT    LKAC+ +   ++  E+H   I+ G   D+++ N+L+  Y     
Sbjct: 131 MLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDV 190

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSS 120
           I SA ++F++    D+VSWTT+I G  K GF +E + ++                     
Sbjct: 191 IRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLYI-------------------- 230

Query: 121 LVSHKLGKAIHAHSLRNLNEN-NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
                         +RN N N ++ + NA++D Y++CG       +F +MP +NVVSW +
Sbjct: 231 --------------IRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNS 276

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           MI G A++G  KE++ +F++M++    +P++ TLV VL++C+++  L  GK+VH+Y+  R
Sbjct: 277 MISGLAQKGQFKESLYMFRKMQRLG-VKPDDVTLVAVLNSCANLGVLELGKWVHAYLD-R 334

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
             +     +GNA+++MY KCG +  A  VF  +  KD  S++ +I GLAM+G G +AL L
Sbjct: 335 NQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDL 394

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
           FS M    + PD+VTF+ +++ACSH GLV++G   F+ MST+Y + PQ++HY C+VD+ G
Sbjct: 395 FSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLG 454

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFAL 419
           RAGL+ EAE FIR MPIE +  V GALL AC+IH   E+ + + + +   +    G + L
Sbjct: 455 RAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVL 514

Query: 420 MSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           MSN ++ A+RW D  K+R  ++   L+K  GCS IE++
Sbjct: 515 MSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIELD 552


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 181/485 (37%), Positives = 285/485 (58%), Gaps = 41/485 (8%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +T+   LKA       ++  ++   +++ G   D ++ NSL+  Y  + ++ +A ++F+ 
Sbjct: 244 FTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDE 303

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKL 126
           +   D VSW  +ISG  +C   ++AI+ F  +    + KP+  T+VS LSAC++L + +L
Sbjct: 304 MTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLEL 363

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSL-------------------------AS 161
           G  IH +  + L     I DNA+LD Y +CG L                          +
Sbjct: 364 GDEIHNYVRKELGFTTRI-DNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYIN 422

Query: 162 CGYL------FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVN 215
           CG L      F K P R+VV WT MI GY +     +AV++F+EM+  +  +P++ T+V 
Sbjct: 423 CGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQ-IQRVKPDKFTVVT 481

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           +L+ C+ + AL  GK++H Y+     +++  +VG A+I MY KCG V  ++++F  L  K
Sbjct: 482 LLTGCAQLGALEQGKWIHGYLDENR-ITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDK 540

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILF 335
           D  SW+++I GLAMNG   +AL+LFS M      PDD+TFI ++SACSHGGLV++G   F
Sbjct: 541 DTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFF 600

Query: 336 KAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPI---EAEWSVWGALLNACRI 392
            +M  V+ I P+++HY CV+D+ GRAGLL+EAE  I+E+PI   E    ++GALL+ACRI
Sbjct: 601 NSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRI 660

Query: 393 HRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCS 452
           H N +M +R+ + L N +        L++N +A  DRWED  K+R +++ +G+KK  GCS
Sbjct: 661 HNNVDMGERLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCS 720

Query: 453 WIEVN 457
            IEV+
Sbjct: 721 LIEVD 725



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 195/409 (47%), Gaps = 42/409 (10%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYV--TVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           +I + +   G   D    N L+ F    ++ ++  A +IFN V  P +  +  ++   +K
Sbjct: 161 QIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKMYAK 220

Query: 89  CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
            G  ++ + +F  +    + P+  T   VL A   L   + G+ +    ++   + +  +
Sbjct: 221 RGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYV 280

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            N+++D Y    ++ +   LF +M  R+ VSW  MI GY      ++A++ F+EM++   
Sbjct: 281 YNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGN 340

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
            +P+EAT+V+ LSAC+++  L  G  +H+Y+  R +L  +  + NA+++MY KCG + IA
Sbjct: 341 EKPDEATVVSTLSACTALKNLELGDEIHNYV--RKELGFTTRIDNALLDMYAKCGCLNIA 398

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQ------------------------------ 295
             +F+ ++ K+ I W+++ISG    G  R+                              
Sbjct: 399 RNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFD 458

Query: 296 -ALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
            A+ LF  M I  V PD  T + L++ C+  G ++QG  +   +     I   +     +
Sbjct: 459 DAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDE-NRITMDVVVGTAL 517

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIR 403
           ++MY + G ++++     E+  + + + W +++  C +  N +  + +R
Sbjct: 518 IEMYSKCGCVDKSLEIFYELE-DKDTASWTSII--CGLAMNGKTSEALR 563


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 182/485 (37%), Positives = 285/485 (58%), Gaps = 41/485 (8%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +T+   LKA       ++  ++   +++ G   D ++ NSL+  Y  + ++ +A ++F+ 
Sbjct: 198 FTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDE 257

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKL 126
           +   D VSW  +ISG  +C   ++AI+ F  +    + KP+  T+VS LSAC++L + +L
Sbjct: 258 MTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLEL 317

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSL-------------------------AS 161
           G  IH +  + L     I DNA+LD Y +CG L                          +
Sbjct: 318 GDEIHNYVRKELGFTTRI-DNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYIN 376

Query: 162 CGYL------FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVN 215
           CG L      F K P R+VV WT MI GY +     +AV++F+EM+  K  +P++ T+V 
Sbjct: 377 CGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQK-IKPDKFTVVT 435

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           +L+ C+ + AL  GK++H Y+     +++  +VG A+I MY KCG V  ++++F  L  K
Sbjct: 436 LLTGCAQLGALEQGKWIHGYLDENR-ITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDK 494

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILF 335
           D  SW+++I GLAMNG   +AL+LFS M      PDD+TFI ++SACSHGGLV++G   F
Sbjct: 495 DTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFF 554

Query: 336 KAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPI---EAEWSVWGALLNACRI 392
            +M  V+ I P+++HY CV+D+ GRAGLL+EAE  I+E+PI   E    ++GALL+ACRI
Sbjct: 555 NSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRI 614

Query: 393 HRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCS 452
           H N +M +R+ + L N +        L++N +A  DRWED  K+R +++ +G+KK  GCS
Sbjct: 615 HNNVDMGERLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCS 674

Query: 453 WIEVN 457
            IEV+
Sbjct: 675 LIEVD 679



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/409 (23%), Positives = 195/409 (47%), Gaps = 42/409 (10%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYV--TVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           +I + +   G   D    N L+ F    ++ ++  A +IFN V  P +  +  ++   +K
Sbjct: 115 QIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKIYAK 174

Query: 89  CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
            G  ++ + +F  +    + P+  T   VL A   L   + G+ +    ++   + +  +
Sbjct: 175 RGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYV 234

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            N+++D Y    ++ +   LF +M  R+ VSW  MI GY      ++A++ F+EM++   
Sbjct: 235 YNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGN 294

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
            +P+EAT+V+ LSAC+++  L  G  +H+Y+  R +L  +  + NA+++MY KCG + IA
Sbjct: 295 EKPDEATVVSTLSACTALKNLELGDEIHNYV--RKELGFTTRIDNALLDMYAKCGCLNIA 352

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQ------------------------------ 295
             +F+ ++ K+ I W+++ISG    G  R+                              
Sbjct: 353 RNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFD 412

Query: 296 -ALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
            A+ LF  M I  + PD  T + L++ C+  G ++QG  +   +     I   +     +
Sbjct: 413 DAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDE-NRITMDVVVGTAL 471

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIR 403
           ++MY + G ++++     E+  + + + W +++  C +  N +  + +R
Sbjct: 472 IEMYSKCGCVDKSLEIFYELE-DKDTASWTSII--CGLAMNGKTSEALR 517


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 165/456 (36%), Positives = 283/456 (62%), Gaps = 6/456 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           ++YT+   L AC+     +     H  V++ G   D+F+ N+L+ FY        A  +F
Sbjct: 110 DNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVF 169

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSH 124
           +     DVV+W  +I+     G  ++A D+   +    +++P+  T+VS++ AC+ L + 
Sbjct: 170 DESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNL 229

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           + GK +H++S     + N+ ++NAILD Y +C  + S   +F ++ +++V+SWT+M+ G 
Sbjct: 230 ERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGL 289

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           A+ G+ +EA+++FQ+M+  K  E +E TLV VLSAC+   AL  GKY+H  I  +++++ 
Sbjct: 290 AKSGYFQEALALFQKMQLNK-IELDEITLVGVLSACAQTGALDQGKYIHLLID-KFEINC 347

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
             ++  A+++MY KCG + +A+QVF  +  ++  +W+ +I GLAM+G G  A+ LF  M 
Sbjct: 348 DLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQME 407

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
            + + PDDVTFIAL+ ACSH GLVD+GL +F+AM   ++I P+M+HY CVVD+  RA  +
Sbjct: 408 HDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKV 467

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           ++A AFI  MPI+A   +W  LL ACR   + ++ ++I + ++  +  S G + ++SN +
Sbjct: 468 DDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLY 527

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           AG  +W+   K+R +++  G++K  GCSWIE+N  I
Sbjct: 528 AGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMI 563



 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 117/387 (30%), Positives = 205/387 (52%), Gaps = 12/387 (3%)

Query: 28  KALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK--DIFSAHQIFNSVVFPDVVSWTTIISG 85
           K  + HA ++    LH+    + L+ F       D+  A ++F  +  PD     T+I G
Sbjct: 26  KTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRG 85

Query: 86  LSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN 142
            ++     EA+ ++  +    V  +  T   VL+AC+ L + KLG+  H   L+N   ++
Sbjct: 86  YARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSD 145

Query: 143 IILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202
           + + NA++ FY  CGS      +F +   R+VV+W  MI  +  +G  ++A  +  EM K
Sbjct: 146 LFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTK 205

Query: 203 TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 262
                P+E T+V+++ AC+ +  L  GK++HSY S    L  +  V NA+++MY KC D+
Sbjct: 206 LDNLRPDEVTMVSLVPACAQLGNLERGKFLHSY-SKELGLDENLRVNNAILDMYCKCDDI 264

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
             A +VFN +  KD +SW++++SGLA +G  ++AL LF  M +N +  D++T + ++SAC
Sbjct: 265 ESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSAC 324

Query: 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
           +  G +DQG  +   +   +EI   +     +VDMY + G ++ A    R M +   ++ 
Sbjct: 325 AQTGALDQGKYIHLLIDK-FEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFT- 382

Query: 383 WGALLNACRIHRNDE----MFDRIRQD 405
           W AL+    +H + E    +FD++  D
Sbjct: 383 WNALIGGLAMHGHGEDAISLFDQMEHD 409



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 132/291 (45%), Gaps = 9/291 (3%)

Query: 104 VKPNAN--TLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI--RCGSL 159
           +KP++    L+SV    +   S    K  HA  LR    +N +  + ++ F      G L
Sbjct: 2   IKPSSKCTKLISVDFLKTHCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDL 61

Query: 160 ASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
                LF +M   +     TMI GYA      EAVS++  M + +    +  T   VL+A
Sbjct: 62  NYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVE-RGVPVDNYTYPFVLAA 120

Query: 220 CSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS 279
           C+ + A+  G+  H  +  +        V NA+I  Y  CG  G A  VF+    +D ++
Sbjct: 121 CARLGAVKLGRRFHCEV-LKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVT 179

Query: 280 WSTVISGLAMNGCGRQALQLFSLMI-INAVFPDDVTFIALISACSHGGLVDQGLILFKAM 338
           W+ +I+     G   +A  L   M  ++ + PD+VT ++L+ AC+  G +++G  L  + 
Sbjct: 180 WNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFL-HSY 238

Query: 339 STVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           S    +   ++    ++DMY +   +E A+     +  E +   W ++L+ 
Sbjct: 239 SKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIR-EKDVLSWTSMLSG 288


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  331 bits (849), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 170/488 (34%), Positives = 289/488 (59%), Gaps = 36/488 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYV------------ 56
           N YTF   LK+C+ +    +  +IH  V++ G   D+++  SL+  YV            
Sbjct: 63  NSYTFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVF 122

Query: 57  -------------------TVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAID 97
                              +  DI SA ++F+ +   DVVSW  +ISG ++ G +KEA++
Sbjct: 123 DRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALE 182

Query: 98  MF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
           +F     ++V+P+ +T V+VLSAC+   S +LG+ +H+    +  ++N+ + NA++D Y 
Sbjct: 183 LFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYS 242

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           +CG + +   LF  +  ++V+SW T+IGGY      KEA+ +FQEM ++ E  PN+ T++
Sbjct: 243 KCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET-PNDVTML 301

Query: 215 NVLSACSSISALSFGKYVHSYISTRYD-LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 273
           +VL AC+ + A+  G+++H YI  R   ++ ++ +  ++I+MY KCGD+  A QVFN + 
Sbjct: 302 SVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSML 361

Query: 274 YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI 333
           +K   SW+ +I G AM+G    +  LFS M    + PDD+TF+ L+SACSH G++D G  
Sbjct: 362 HKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRH 421

Query: 334 LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           +F++M+  Y++ P+++HY C++D+ G +GL +EAE  I  M +E +  +W +LL AC++H
Sbjct: 422 IFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMH 481

Query: 394 RNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSW 453
            N E+ +   Q+L+  +  +  ++ L+SN +A A RWED  +IR  +    +KK  GCS 
Sbjct: 482 GNVELAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSS 541

Query: 454 IEVNPSIF 461
           IEV+  +F
Sbjct: 542 IEVDSVVF 549



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 186/382 (48%), Gaps = 46/382 (12%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSS 120
           A  +F ++  P+ + W T+I G +       ++ ++     + + PN+ T   +L +C+ 
Sbjct: 17  ATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAK 76

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
             +   G+ IH   L+   + ++ +  +++  Y++   L     +F +   R+VVS+T +
Sbjct: 77  SKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTAL 136

Query: 181 IGGYAERGFC-------------------------------KEAVSVFQEMEKTKEAEPN 209
           I GYA RG                                 KEA+ +F+EM K     P+
Sbjct: 137 ITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMN-VRPD 195

Query: 210 EATLVNVLSACSSISALSFGKYVHSYISTR-YDLSVSNL-VGNAVINMYVKCGDVGIAIQ 267
           E+T V VLSAC+   ++  G+ VHS++    +D   SNL + NA+I++Y KCG+V  A  
Sbjct: 196 ESTYVTVLSACAHSGSIELGRQVHSWVDDHGFD---SNLKIVNALIDLYSKCGEVETACG 252

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           +F  L+YKD ISW+T+I G       ++AL LF  M+ +   P+DVT ++++ AC+H G 
Sbjct: 253 LFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGA 312

Query: 328 VDQGLILFKAMSTVYEIVPQMQHY-ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 386
           +D G  +   +    + V         ++DMY + G +E A      M +    S W A+
Sbjct: 313 IDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSM-LHKSLSSWNAM 371

Query: 387 LNACRIH-RNDEMFD---RIRQ 404
           +    +H R D  FD   R+R+
Sbjct: 372 IFGFAMHGRADASFDLFSRMRK 393


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  331 bits (848), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 184/489 (37%), Positives = 286/489 (58%), Gaps = 35/489 (7%)

Query: 3   SCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIF 62
           SC    N +TF    KA S          +H  VI+     D+FI NSL++FY +     
Sbjct: 166 SCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPD 225

Query: 63  SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 119
            AH++F ++   DVVSW  +I+  +  G   +A+ +F  +   DVKPN  T+VSVLSAC+
Sbjct: 226 LAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACA 285

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
             +  + G+ I ++   N    ++IL+NA+LD Y++CG +     LF KM ++++VSWTT
Sbjct: 286 KKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTT 345

Query: 180 MIGGYAERGFCKEA-------------------------------VSVFQEMEKTKEAEP 208
           M+ G+A+ G   EA                               +S+F EM+ +K+A+P
Sbjct: 346 MLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKP 405

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           +E TL+  L A + + A+ FG ++H YI  ++D++++  +  ++++MY KCG++  A++V
Sbjct: 406 DEVTLICALCASAQLGAIDFGHWIHVYIK-KHDINLNCHLATSLLDMYAKCGNLNKAMEV 464

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F+ +  KD   WS +I  LAM G G+ AL LFS M+   + P+ VTF  ++ AC+H GLV
Sbjct: 465 FHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLV 524

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
           ++G  LF+ M  +Y IVPQ+QHY CVVD++GRAGLLE+A +FI +MPI    +VWGALL 
Sbjct: 525 NEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLG 584

Query: 389 ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
           AC  H N E+ +   Q+L+  +  + G F L+SN +A A  WE  + +R  +R   +KK+
Sbjct: 585 ACSRHGNVELAELAYQNLLELEPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKE 644

Query: 449 TGCSWIEVN 457
             CS I+VN
Sbjct: 645 PWCSSIDVN 653



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 185/397 (46%), Gaps = 42/397 (10%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYV--TVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           +IHAH++      D +  + LL  Y   +   +  A  +FN +  P++  W T+I G + 
Sbjct: 90  QIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYAS 149

Query: 89  CGFHKEA----IDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
                ++    + M       PN  T   +  A S L    LG  +H   ++    +++ 
Sbjct: 150 SSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLF 209

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           + N++++FY   G+      +F  MP ++VVSW  MI  +A  G   +A+ +FQEME  K
Sbjct: 210 ILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEME-MK 268

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
           + +PN  T+V+VLSAC+    L FG+++ SYI      +   ++ NA+++MYVKCG +  
Sbjct: 269 DVKPNVITMVSVLSACAKKIDLEFGRWICSYIENN-GFTEHLILNNAMLDMYVKCGCIND 327

Query: 265 AIQVFNMLAYKDKISWSTVISGLA-------------------------------MNGCG 293
           A  +FN ++ KD +SW+T++ G A                                NG  
Sbjct: 328 AKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKP 387

Query: 294 RQALQLFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
           R AL LF  M ++    PD+VT I  + A +  G +D G  +   +   ++I        
Sbjct: 388 RVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKK-HDINLNCHLAT 446

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
            ++DMY + G L +A      +    +  VW A++ A
Sbjct: 447 SLLDMYAKCGNLNKAMEVFHAVE-RKDVYVWSAMIGA 482


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  331 bits (848), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 169/455 (37%), Positives = 277/455 (60%), Gaps = 7/455 (1%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
            ++ +TF+  LKACS     ++  ++HA +++ G   + F++N+L+  Y     I  A  
Sbjct: 118 QHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARH 177

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVS 123
           +F+ +    +V+W +++SG +K G   E + +F  I    ++ +  T++SVL AC  L +
Sbjct: 178 VFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLAN 237

Query: 124 HKLGKAIHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
            ++G+ I  + + + L  NN  L  +++D Y +CG + +   LF +M KR+VV+W+ MI 
Sbjct: 238 LEIGELIGEYIVSKGLRRNNT-LTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMIS 296

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
           GYA+   CKEA+++F EM+K     PNE T+V+VL +C+ + A   GK+VH YI  +  +
Sbjct: 297 GYAQADRCKEALNLFHEMQKGN-VYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKK-KM 354

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
            ++  +G  +I+ Y KCG +  +++VF  +++K+  +W+ +I GLA NG G+ AL+ FS 
Sbjct: 355 KLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSS 414

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
           M+ N V P+DVTFI ++SACSH  LVDQG  LF +M   ++I P+++HY C+VD+ GRAG
Sbjct: 415 MLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAG 474

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSN 422
            LEEA  FI  MP      VW  LL +CR H+N EM ++  + +   +    G + L+SN
Sbjct: 475 FLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSN 534

Query: 423 TFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           T+A   R ED  ++R  I+   +KK  GCS IE++
Sbjct: 535 TYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELD 569



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 133/268 (49%), Gaps = 14/268 (5%)

Query: 128 KAIHAHSLRNLNENNIILDNAILD--FYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           + +HAH L+     + I+  A+L+    +   ++     +F  + K    ++  MI G A
Sbjct: 38  QQVHAHLLKTRRLLDPIITEAVLESAALLLPDTIDYALSIFNHIDKPESSAYNVMIRGLA 97

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
            +     A+ +F++M + K  + ++ T  +VL ACS + AL  G+ VH+ I  +     +
Sbjct: 98  FKRSPDNALLLFKKMHE-KSVQHDKFTFSSVLKACSRMKALREGEQVHALI-LKSGFKSN 155

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V N +I MY  CG +G+A  VF+ +  +  ++W++++SG   NG   + ++LF  ++ 
Sbjct: 156 EFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILE 215

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQH----YACVVDMYGRA 361
             +  DDVT I+++ AC     ++ G ++ +     Y +   ++        ++DMY + 
Sbjct: 216 LRIEFDDVTMISVLMACGRLANLEIGELIGE-----YIVSKGLRRNNTLTTSLIDMYAKC 270

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNA 389
           G ++ A     EM  + +   W A+++ 
Sbjct: 271 GQVDTARKLFDEMD-KRDVVAWSAMISG 297


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  331 bits (848), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 172/484 (35%), Positives = 286/484 (59%), Gaps = 36/484 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV---KD----- 60
           N YTF   LK+C+     ++  +IH HV++ G+  D+++  SL+  YV     KD     
Sbjct: 102 NSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVF 161

Query: 61  -----------------------IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAID 97
                                  I SA ++F+ +   DVVSW  IISG +  G +KEA+D
Sbjct: 162 DGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALD 221

Query: 98  MF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
           +F      +VKP+ +T+V+V+SAC+   S +LG+ +H+    +   +N+ + NA++D Y 
Sbjct: 222 LFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYS 281

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           +CG + +   LF  +  ++V+SW TMIGGY      KEA+ +FQEM ++ E  PN+ T++
Sbjct: 282 KCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGE-NPNDVTML 340

Query: 215 NVLSACSSISALSFGKYVHSYISTRYD-LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 273
           ++L AC+ + A+ FG+++H YI  R   ++ ++ +  ++I+MY KCGD+  A QVFN + 
Sbjct: 341 SILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMH 400

Query: 274 YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI 333
           ++   + + +I G AM+G    A  +FS M  N + PDD+TF+ L+SACSH G++D G  
Sbjct: 401 HRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRR 460

Query: 334 LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           +F++M+  Y+I P+++HY C++D+ G  GL +EAE  I  M +E +  +W +LL AC++H
Sbjct: 461 IFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMH 520

Query: 394 RNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSW 453
            N E+ +   Q L+  +  + G++ L+SN +A A RW +   IR  +   G+KK  GCS 
Sbjct: 521 GNVELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSS 580

Query: 454 IEVN 457
           IE++
Sbjct: 581 IEID 584



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 188/381 (49%), Gaps = 40/381 (10%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKD---IFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           IHA +I+ G  +  +  + LL F +   +   +  A  +F ++  P+++ W T+  G + 
Sbjct: 21  IHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQEPNLLIWNTMFRGHAL 80

Query: 89  CGFHKEAIDMF-CGIDVK--PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
                 AI ++ C I +   PN+ T   +L +C+ L   K G+ IH H L+   E ++ +
Sbjct: 81  SSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYV 140

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFC--------------- 190
             +++  Y++ G       +F     R+VVS+T +I GYA RG+                
Sbjct: 141 HTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDV 200

Query: 191 ----------------KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
                           KEA+ +F+EM KT   +P+E+T+V V+SAC+   ++  G+ VHS
Sbjct: 201 VSWNAIISGYADTGNNKEALDLFKEMMKTN-VKPDESTMVTVVSACAQSGSIQLGRQVHS 259

Query: 235 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
           +I   + L  +  + NA+I++Y KCG+V  A  +F  L+ KD ISW+T+I G       +
Sbjct: 260 WIDD-HGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYK 318

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY-AC 353
           +AL LF  M+ +   P+DVT ++++ AC+  G +D G  +   +    + V         
Sbjct: 319 EALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTS 378

Query: 354 VVDMYGRAGLLEEAEAFIREM 374
           ++DMY + G +E A      M
Sbjct: 379 LIDMYAKCGDIEAAHQVFNSM 399


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 160/452 (35%), Positives = 275/452 (60%), Gaps = 5/452 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N++T    LKAC+     +  L+IH+ +++ G+ HD+F++ SLL  YV   +   A ++F
Sbjct: 113 NNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVF 172

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHK 125
           + +   +VVSWT II+G    G  +EAI  F     + +KP++ +LV VL+AC+ L    
Sbjct: 173 DDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCT 232

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ I  +   +    N+ +  ++LD Y++CG+L     +F  MP++++VSW+TMI GYA
Sbjct: 233 SGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYA 292

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G  ++A+ +F +M+ ++  +P+  T+V VLSAC+++ AL  G +  S +  R +   +
Sbjct: 293 FNGLPQQALDLFFQMQ-SENLKPDCYTMVGVLSACATLGALDLGIWASSLMD-RNEFLSN 350

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
            ++G A+I+MY KCG V  A ++F  +  KD++ W+ ++ GL+MNG  +    LFSL+  
Sbjct: 351 PVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEK 410

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
           + + PD+ TFI L+  C+HGG V++G   F  M  V+ + P ++HY C+VD+ GRAGLL 
Sbjct: 411 HGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLN 470

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EA   I  MP++    VWGALL  C++H++  + +++ + L+  +  + G +  +SN ++
Sbjct: 471 EAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYS 530

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           G  RWE+  KIR  ++   ++K   CSWIE++
Sbjct: 531 GNHRWEEAEKIRSTMKEQQIQKIRACSWIEID 562



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 105/370 (28%), Positives = 188/370 (50%), Gaps = 14/370 (3%)

Query: 21  SLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWT 80
            L H H + L +H          D ++ N +L   +       +  +F+ V  P++  W 
Sbjct: 31  QLKHIHARLLRLHLD-------QDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWN 83

Query: 81  TIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRN 137
           T+I GL       +AI ++    G    PN  T+  VL AC+  +  +LG  IH+  ++ 
Sbjct: 84  TMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKA 143

Query: 138 LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVF 197
             ++++ +  ++L  Y++C +      +F  +P +NVVSWT +I GY   G  +EA+  F
Sbjct: 144 GYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAF 203

Query: 198 QEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYV 257
           +++ +    +P+  +LV VL+AC+ +   + G+++  YIS    +  +  V  ++++MYV
Sbjct: 204 KKLLEMG-LKPDSFSLVKVLAACARLGDCTSGEWIDRYISDS-GMGRNVFVATSLLDMYV 261

Query: 258 KCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIA 317
           KCG++  A  +F+ +  KD +SWST+I G A NG  +QAL LF  M    + PD  T + 
Sbjct: 262 KCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVG 321

Query: 318 LISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIE 377
           ++SAC+  G +D G I   ++    E +        ++DMY + G + +A      M   
Sbjct: 322 VLSACATLGALDLG-IWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMK-R 379

Query: 378 AEWSVWGALL 387
            +  VW A++
Sbjct: 380 KDRVVWNAMM 389


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 160/452 (35%), Positives = 275/452 (60%), Gaps = 5/452 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N++T    LKAC+     +  L+IH+ +++ G+ HD+F++ SLL  YV   +   A ++F
Sbjct: 113 NNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVF 172

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHK 125
           + +   +VVSWT II+G    G  +EAI  F     + +KP++ +LV VL+AC+ L    
Sbjct: 173 DDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCT 232

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ I  +   +    N+ +  ++LD Y++CG+L     +F  MP++++VSW+TMI GYA
Sbjct: 233 SGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYA 292

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G  ++A+ +F +M+ ++  +P+  T+V VLSAC+++ AL  G +  S +  R +   +
Sbjct: 293 FNGLPQQALDLFFQMQ-SENLKPDCYTMVGVLSACATLGALDLGIWASSLMD-RNEFLSN 350

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
            ++G A+I+MY KCG V  A ++F  +  KD++ W+ ++ GL+MNG  +    LFSL+  
Sbjct: 351 PVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEK 410

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
           + + PD+ TFI L+  C+HGG V++G   F  M  V+ + P ++HY C+VD+ GRAGLL 
Sbjct: 411 HGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLN 470

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EA   I  MP++    VWGALL  C++H++  + +++ + L+  +  + G +  +SN ++
Sbjct: 471 EAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYS 530

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           G  RWE+  KIR  ++   ++K   CSWIE++
Sbjct: 531 GNHRWEEAEKIRSTMKEQQIQKIRACSWIEID 562



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/370 (28%), Positives = 189/370 (51%), Gaps = 14/370 (3%)

Query: 21  SLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWT 80
            L H H + L +H          D ++ N +L   +       +  +F+ V  P++  W 
Sbjct: 31  QLKHIHARLLRLHLD-------QDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWN 83

Query: 81  TIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRN 137
           T+I GL       +AI ++    G    PN  T+  VL AC+  +  +LG  IH+  ++ 
Sbjct: 84  TMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKA 143

Query: 138 LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVF 197
             ++++ +  ++L  Y++C +      +F  +P +NVVSWT +I GY   G  +EA+  F
Sbjct: 144 GYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAF 203

Query: 198 QEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYV 257
           +++ +    +P+  +LV VL+AC+ +   + G+++  YIS    +  +  V  ++++MYV
Sbjct: 204 KKLLEMG-LKPDSFSLVKVLAACARLGDCTSGEWIDRYISDS-GMGRNVFVATSLLDMYV 261

Query: 258 KCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIA 317
           KCG++  A  +F+ +  KD +SWST+I G A NG  +QAL LF  M    + PD  T + 
Sbjct: 262 KCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVG 321

Query: 318 LISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIE 377
           ++SAC+  G +D G I   ++    E +        ++DMY + G + +A      M  +
Sbjct: 322 VLSACATLGALDLG-IWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMK-K 379

Query: 378 AEWSVWGALL 387
            +  VW A++
Sbjct: 380 KDRVVWNAMM 389


>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 591

 Score =  329 bits (843), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 169/452 (37%), Positives = 273/452 (60%), Gaps = 7/452 (1%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFN 69
           +T    LKA +L    ++  +IHA  I+ G +  ++++ N+L+  Y     I    ++F+
Sbjct: 111 FTIPLVLKALALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFD 170

Query: 70  SVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKL 126
                D+VSWTT+I   +K G +  A++ F   C + ++ +  TLV VLSACS+L    L
Sbjct: 171 ECPHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNL 230

Query: 127 GKAIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           G+ +H++    ++ + ++ + NA+LD Y++C  L S   +F +MP +NVV+W  MI G A
Sbjct: 231 GQKVHSYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLA 290

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
            +G  +EA+  F+ M+  K  +P+E TLV VL++C+++  L  GK+VH+Y+   + L+  
Sbjct: 291 YQGRYREALDTFRMMQD-KGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILA-D 348

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             VGNA+++MY KCG +  A +VF  +  +D  S++ +I GLA++G    A Q+FS M  
Sbjct: 349 KFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFR 408

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             + P++VTF+ L+ ACSHGGLV +G   F  MS  Y++ PQ +HY C++D+ GRAGL++
Sbjct: 409 VGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVK 468

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EAE  I +M I  +    GALL ACRIH N ++ + + Q L        GT+ LM+N ++
Sbjct: 469 EAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTELDPDEEGTYILMTNLYS 528

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
              RW+D  KIR  ++   ++K  GCS IEV+
Sbjct: 529 SVHRWKDALKIRKTMKNKKMRKTPGCSLIEVD 560



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 95/208 (45%), Gaps = 4/208 (1%)

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
           EP+  T+  VL A + I  +  G+ +H+       +  +  V N ++ +Y  CG +    
Sbjct: 107 EPDGFTIPLVLKALALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQ 166

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
           +VF+   ++D +SW+T+I      G   +A++ F  M    +  D  T + ++SACS+ G
Sbjct: 167 KVFDECPHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLG 226

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 386
            ++ G  +   +    ++   +     ++DMY +   L  A     EMP++     W A+
Sbjct: 227 DLNLGQKVHSYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVK-NVVTWNAM 285

Query: 387 LNACRIH-RNDEMFDRIRQDLVNKKGVS 413
           ++      R  E  D  R  ++  KGV 
Sbjct: 286 ISGLAYQGRYREALDTFR--MMQDKGVK 311


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 175/496 (35%), Positives = 287/496 (57%), Gaps = 40/496 (8%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYV---- 56
           M+S     N Y+F   LK+C+ +   ++  +IHA V++ G   D ++  SL+  Y     
Sbjct: 55  MVSLGHLPNSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGG 114

Query: 57  ---------------------------TVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
                                      +  D  SA ++F+ +   DVVSW  +I+G  + 
Sbjct: 115 LEDARKVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVEN 174

Query: 90  GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLN----ENN 142
           G ++EA+++F  +   +V+P+  TLVSV+SAC+   S +LG+ +H+    + +     ++
Sbjct: 175 GRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSS 234

Query: 143 IILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202
           + + NA++D Y +CG + +   LF  +  ++VVSW T+IGGY      KEA+ +FQEM +
Sbjct: 235 LKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLR 294

Query: 203 TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD-LSVSNLVGNAVINMYVKCGD 261
           + E  PN+ TL++VL AC+ + A+  G+++H YI  +   ++    +  ++I+MY KCGD
Sbjct: 295 SGEC-PNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGD 353

Query: 262 VGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISA 321
           +  A QVFN + Y+   SW+ +I G AM+G    A  LFS M  N V PDD+TF+ L+SA
Sbjct: 354 IEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSA 413

Query: 322 CSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 381
           CSH GL+D G  +FK+M+  Y + P+++HY C++D+ G +GL +EAE  I  MP+E +  
Sbjct: 414 CSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGV 473

Query: 382 VWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIR 441
           +W +LL AC+ H N E+ +   Q L+  +  + G++ L+SN +A A RWED  ++R  + 
Sbjct: 474 IWCSLLKACKKHGNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLN 533

Query: 442 RMGLKKKTGCSWIEVN 457
             G+KK  GCS IEV+
Sbjct: 534 GKGMKKVPGCSSIEVD 549



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 192/400 (48%), Gaps = 45/400 (11%)

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVS 123
           +F ++  P+++ W T++ G +       A++M+     +   PN+ +   +L +C+   +
Sbjct: 20  VFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKSKA 79

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            + G+ IHA  L+     +  +  +++  Y R G L     +F     R+VVS T +I G
Sbjct: 80  FEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITG 139

Query: 184 YAERGFCK-------------------------------EAVSVFQEMEKTKEAEPNEAT 212
           YA RG  +                               EA+ +F+EM +T    P+E T
Sbjct: 140 YASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTN-VRPDEGT 198

Query: 213 LVNVLSACSSISALSFGKYVHSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF 269
           LV+V+SAC+   ++  G+ VHS++      +  S S  + NA+I++Y KCGDV  A  +F
Sbjct: 199 LVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLF 258

Query: 270 NMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVD 329
             L+ KD +SW+T+I G       ++AL LF  M+ +   P+DVT ++++ AC+H G +D
Sbjct: 259 EGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAID 318

Query: 330 QGLILFKAMSTVYE-IVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
            G  +   +    + +  +      ++DMY + G +E A      M +    S W A++ 
Sbjct: 319 IGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSM-LYRSLSSWNAMIF 377

Query: 389 ACRIHRND----EMFDRIRQDLVNKKGVS-VGTFALMSNT 423
              +H       ++F R+R + V    ++ VG  +  S++
Sbjct: 378 GFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHS 417


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 175/494 (35%), Positives = 285/494 (57%), Gaps = 39/494 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML   +  +++TF   LKACS      +  +IH HV+  G   D+F+ NSL+  Y     
Sbjct: 84  MLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHTHVLRLGFGSDLFVCNSLIDMYCKCFR 143

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF--------------------- 99
           + SA   ++ + F D VSW +IISG  + G  ++A D+F                     
Sbjct: 144 LDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKARDLFEEMPMRRNVVCWTAMINGYGK 203

Query: 100 ----------------CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNI 143
                              +V+PNA T+V +LSACS+L ++++G+ +      N    N 
Sbjct: 204 EGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCNYEVGRFLSVFIDVNKIPLNT 263

Query: 144 ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
           IL  A++D Y +CG +     +F  +  +N+ SW  +I G  + G  +EA+ +++ M K 
Sbjct: 264 ILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHM-KA 322

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
           +  +PNE TLVNVLSAC+ + AL  G+ VH Y+  R  L ++ ++  A+++MY KCG + 
Sbjct: 323 QSVKPNEITLVNVLSACAGLGALELGREVHLYLG-RNGLDLNVILATALVDMYAKCGKID 381

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
            A  +F   + KD   W+ +I GLA +G GR +L +FS M+   V P+DVTFI ++SAC+
Sbjct: 382 DACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACN 441

Query: 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 383
           H GLV++G + F +M+  + + P+++HYAC+VD+ GRAG L+EA   ++ M I  +  +W
Sbjct: 442 HSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYELVQNMLIPPDSIIW 501

Query: 384 GALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443
           GALL+ACRIHRN E+ D+I + ++  +  ++G   L+SN +A + RW+D  ++R +++  
Sbjct: 502 GALLSACRIHRNLELADKISETIMASQDPNIGFCILLSNIYASSGRWKDVARVRRQVKEK 561

Query: 444 GLKKKTGCSWIEVN 457
            +KK +GCSW+EV+
Sbjct: 562 RIKKPSGCSWVEVD 575


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 171/486 (35%), Positives = 289/486 (59%), Gaps = 40/486 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N Y+F   LK+C+ +    +  +IH HV++ G+  D+++  SL+  Y     +  AH++F
Sbjct: 64  NSYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVF 123

Query: 69  N-------------------------------SVVFPDVVSWTTIISG-LSKCGFHKEAI 96
           +                                +   DVVSW  +ISG +  C F KEA+
Sbjct: 124 DRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNF-KEAL 182

Query: 97  DMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFY 153
           +++  +   +VKP+ +T+V+V+SAC+   S +LG+ +H+    +   +NI + N ++D Y
Sbjct: 183 ELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLY 242

Query: 154 IRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATL 213
            +CG + +   LF  + K++V+SW T+IGG+      KEA+ +FQEM ++ E+ PN+ T+
Sbjct: 243 SKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGES-PNDVTM 301

Query: 214 VNVLSACSSISALSFGKYVHSYISTRYD--LSVSNLVGNAVINMYVKCGDVGIAIQVFNM 271
           ++VL AC+ + A+  G+++H YI+ R     + S+L+  ++I+MY KCGD+  A QVF+ 
Sbjct: 302 LSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLL-TSLIDMYAKCGDIEAAKQVFDS 360

Query: 272 LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
           +  +   SW+ +I G AM+G    A  LFS M  N + PDD+TF+ L+SACSH G++D G
Sbjct: 361 MLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLG 420

Query: 332 LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACR 391
             +F++MS  Y+I P+++HY C++D+ G  GL +EA+  IR MP+E +  +W +LL AC+
Sbjct: 421 RHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACK 480

Query: 392 IHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGC 451
           +H N E+ +   Q+L+  +  + G++ L+SN +A A RW+   KIR  +   G+KK  GC
Sbjct: 481 MHNNVELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGC 540

Query: 452 SWIEVN 457
           S IE++
Sbjct: 541 SSIEID 546



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 106/235 (45%), Gaps = 36/235 (15%)

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224
           +F  + + N++ W TM  G+A       A+ ++  M  +    PN  +   +L +C+   
Sbjct: 21  IFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCM-ISLGLLPNSYSFPFLLKSCAKSK 79

Query: 225 ALSFGKYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM------------ 271
           AL  G+ +H ++    YDL +   V  ++I+MY + G +  A +VF+             
Sbjct: 80  ALIEGQQIHGHVLKLGYDLDM--YVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTAL 137

Query: 272 -------------------LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD 312
                              ++ KD +SW+ +ISG       ++AL+L+  M+   V PD+
Sbjct: 138 ITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDE 197

Query: 313 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
            T + ++SAC+  G ++ G  L   +   +     ++    ++D+Y + G +E A
Sbjct: 198 STMVTVVSACAQSGSIELGRQLHSWIED-HGFGSNIKIVNVLIDLYSKCGEVETA 251



 Score = 42.0 bits (97), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 3/104 (2%)

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
           AI +F  +   + + W+T+  G A+N     AL+L+  MI   + P+  +F  L+ +C+ 
Sbjct: 18  AISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAK 77

Query: 325 G-GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
              L++   I    +   Y++   M     ++ MY + G LE+A
Sbjct: 78  SKALIEGQQIHGHVLKLGYDL--DMYVNTSLISMYAQNGRLEDA 119


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  327 bits (839), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 172/496 (34%), Positives = 295/496 (59%), Gaps = 40/496 (8%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFY----- 55
           M+S     + YTF   LK+C+ +   ++  +IH HV++ G   DI++  SL+  Y     
Sbjct: 80  MISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGR 139

Query: 56  --------------------------VTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
                                     V+   I SA ++F+ +   DVVSW  +ISG  + 
Sbjct: 140 LEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVET 199

Query: 90  GFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
           G +KEA+++F  +    +V+P+ +T+V+V+SAC+   S +LG+ +H+    +   +N+ +
Sbjct: 200 GNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKI 259

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            NA++D Y + G + +   LF  +  ++V+SW T+IGGY      KEA+ +FQEM ++ E
Sbjct: 260 VNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 319

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL--VGNAVINMYVKCGDVG 263
             PN+ T++++L AC+ + A+  G+++H YI+ +    V+N+  +  ++I+MY KCGD+ 
Sbjct: 320 T-PNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDID 378

Query: 264 IAIQVFNM-LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
            A QVF+  ++ +   +W+ +ISG AM+G    A  +FS M +N + PDD+TF+ L+SAC
Sbjct: 379 AAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSAC 438

Query: 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
           SH G++D G  +F++M+  YEI P+++HY C++D+ G +GL +EAE  I  MP+E +  +
Sbjct: 439 SHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVI 498

Query: 383 WGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442
           W +LL AC+IH N E+ +   + L+  +  + G++ L+SN +A A RW +  KIR  +  
Sbjct: 499 WCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLND 558

Query: 443 MGLKKKT-GCSWIEVN 457
            G+KKK  GCS IE++
Sbjct: 559 KGMKKKVPGCSSIEID 574



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 118/438 (26%), Positives = 214/438 (48%), Gaps = 49/438 (11%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVK--DIFS-AHQIFNSVVFPDVVSWTTIISGLSK 88
           IHA +I+ G  +  +  + LL F V     D F  A  +F+++  P+++ W T+  G + 
Sbjct: 7   IHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGHAL 66

Query: 89  CGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
                 A+ ++     + + P++ T   +L +C+     K G+ IH H L+   + +I +
Sbjct: 67  SSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYV 126

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFC--------------- 190
             +++  Y + G L     +F     R+VVS+T +I GY  RG+                
Sbjct: 127 HTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDV 186

Query: 191 ----------------KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
                           KEA+ +F+EM       P+E+T+V V+SAC+   ++  G++VHS
Sbjct: 187 VSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHS 246

Query: 235 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
           +I+     S   +V NA+I++Y K G+V  A ++F+ L  KD ISW+T+I G       +
Sbjct: 247 WINDHGFASNLKIV-NALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYK 305

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG----LILFKAMSTVYEIVPQMQH 350
           +AL LF  M+ +   P+DVT ++++ AC+H G +D G    + + K +  V   V  +Q 
Sbjct: 306 EALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQ- 364

Query: 351 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFD---RIRQDL 406
              ++DMY + G ++ A+            S W A+++   +H R +  FD   R+R + 
Sbjct: 365 -TSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNG 423

Query: 407 VNKKGVS-VGTFALMSNT 423
           +    ++ VG  +  S++
Sbjct: 424 IEPDDITFVGLLSACSHS 441



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 108/242 (44%), Gaps = 11/242 (4%)

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGY---LFVKMPKRNVVSWTTMIGGY 184
           + IHA  ++    N     + +L+F +         Y   +F  + + N++ W TM  G+
Sbjct: 5   RXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGH 64

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLS 243
           A       A+ ++  M  +    P+  T   +L +C+       G+ +H ++    +DL 
Sbjct: 65  ALSSDPVSALKLYLVM-ISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLD 123

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           +   V  ++I+MY + G +  A +VF++ +++D +S++ +I+G    G    A +LF   
Sbjct: 124 I--YVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFD-- 179

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
                  D V++ A+IS     G   + L LFK M  +  + P       VV    ++  
Sbjct: 180 --EIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDS 237

Query: 364 LE 365
           +E
Sbjct: 238 IE 239


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 167/484 (34%), Positives = 285/484 (58%), Gaps = 36/484 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVT------VKDIF 62
           N YTF   LK+C+ +   ++  +IH HV++ G+  D+F+  SL+  YV        + +F
Sbjct: 133 NSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVF 192

Query: 63  -------------------------SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAID 97
                                    SA ++F+ +   DVVSW  +ISG ++ G +KEA++
Sbjct: 193 DRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALE 252

Query: 98  MF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
           +F      +++P+ +T+V+V+SAC+   S +LG+ +H+    +   +N+ + N+++D Y 
Sbjct: 253 LFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYS 312

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           +CG L +   LF  +  ++V+SW T+IGGY      KEA+ +FQEM ++ E  PN+ T++
Sbjct: 313 KCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE-RPNDVTML 371

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSV-SNLVGNAVINMYVKCGDVGIAIQVFNMLA 273
           ++L AC+ + A+  G+++H YI  R   +  ++ +  ++I+MY KCGD+  A QVFN + 
Sbjct: 372 SILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSIL 431

Query: 274 YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI 333
           +K   SW+ +I G AM+G    A  +FS M    + PDD+TF+ L+SACS  G++D G  
Sbjct: 432 HKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRH 491

Query: 334 LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           +F+ M+  Y+I P+++HY C++D+ G +GL +EAE  I  M +E +  +W +LL AC+I 
Sbjct: 492 IFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIR 551

Query: 394 RNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSW 453
            N E+ +   Q+L+  +  + G + L+SN +A A RW +  KIR  +   G+KK  GCS 
Sbjct: 552 GNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSS 611

Query: 454 IEVN 457
           IE++
Sbjct: 612 IEID 615



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 127/289 (43%), Gaps = 38/289 (13%)

Query: 112 VSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGY---LFVK 168
           +S+L  C +L S +L   IHA  ++    N     + +L+  +         Y   +F  
Sbjct: 37  LSLLHNCKTLQSLRL---IHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFET 93

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           + + N++ W TM  G+A       A+ ++  M  +    PN  T   +L +C+   A   
Sbjct: 94  IQEPNLLIWNTMFRGHALSSDPVSALKLYVCM-ISLGLLPNSYTFPFLLKSCAKSKAFKE 152

Query: 229 GKYVHSYI-STRYDLS-------VSNLVGN----------------------AVINMYVK 258
           G+ +H ++    YDL        +S  V N                      A+I  Y  
Sbjct: 153 GQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYAS 212

Query: 259 CGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIAL 318
            G +  A ++F+ +  KD +SW+ +ISG A  G  ++AL+LF  M+   + PD+ T + +
Sbjct: 213 RGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTV 272

Query: 319 ISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           +SAC+  G ++ G  +   +   +     ++    ++D+Y + G LE A
Sbjct: 273 VSACAQSGSIELGRQVHSWIDD-HGFGSNLKIVNSLMDLYSKCGELETA 320


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 172/494 (34%), Positives = 277/494 (56%), Gaps = 39/494 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+S  +  N YTF    K+C+      +  ++HAHV++ G  H+ F+  SL++ Y    +
Sbjct: 119 MISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGE 178

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK--------------- 105
           + +A  +F+     D VS+T +I+G +  GF  EA ++F  I V+               
Sbjct: 179 LVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQS 238

Query: 106 -------------------PNANTLVSVLSACS-SLVSHKLGKAIHAHSLRNLNENNIIL 145
                              PN +T++SVLSAC+ S  S +LG  + +        +NI L
Sbjct: 239 GRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRL 298

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            N ++D Y++CG L     LF K+  +NVVSW  MIGGY      KEA+ +F+ M ++  
Sbjct: 299 VNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSN- 357

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG--NAVINMYVKCGDVG 263
            +PN+ T +++L AC+++ AL  GK+VH+Y+      S+ N V    ++I+MY KCGD+ 
Sbjct: 358 IDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMK-SMKNTVALWTSLIDMYAKCGDLA 416

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
           +A ++F+ +  K   +W+ +ISG AM+G    AL LFS M      PDD+TF+ +++AC 
Sbjct: 417 VAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACK 476

Query: 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 383
           H GL+  G   F +M   Y++ P++ HY C++D++GRAGL +EAE  ++ M ++ + ++W
Sbjct: 477 HAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIW 536

Query: 384 GALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443
            +LL ACRIHR  E+ + + + L   +  +   + L+SN +AGA RWED  KIR  +   
Sbjct: 537 CSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDN 596

Query: 444 GLKKKTGCSWIEVN 457
            +KK  GCS IEV+
Sbjct: 597 RMKKVPGCSSIEVD 610



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 122/408 (29%), Positives = 208/408 (50%), Gaps = 47/408 (11%)

Query: 27  QKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK--DIFSAHQIFNSVVFPDVVSWTTIIS 84
           Q   +IH+ +I+ G  +  F  + L+ F       D+  A  +F ++  P+ V W  +I 
Sbjct: 42  QTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNHMIR 101

Query: 85  GLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNEN 141
           GLS       A++ +  +     +PN  T  S+  +C+ +     GK +HAH L+   E+
Sbjct: 102 GLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEH 161

Query: 142 NIILDNAILDFYIRCGSL-------------------------ASCGY------LFVKMP 170
           N  +  ++++ Y + G L                         AS G+      LF ++P
Sbjct: 162 NAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIP 221

Query: 171 KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS-SISALSFG 229
            R+VVSW  MI GYA+ G  +EA++ F+EM + K   PN +T+++VLSAC+ S S+L  G
Sbjct: 222 VRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAK-VTPNVSTMLSVLSACAQSGSSLQLG 280

Query: 230 KYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAM 289
            +V S+I  R   S   LV N +I+MYVKCGD+  A  +F  +  K+ +SW+ +I G   
Sbjct: 281 NWVRSWIEDRGLGSNIRLV-NGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTH 339

Query: 290 NGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG----LILFKAMSTVYEIV 345
             C ++AL LF  M+ + + P+DVTF++++ AC++ G +D G      + K M ++   V
Sbjct: 340 MSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTV 399

Query: 346 PQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
                +  ++DMY + G L  A+     M  ++  + W A+++   +H
Sbjct: 400 AL---WTSLIDMYAKCGDLAVAKRIFDCMNTKS-LATWNAMISGFAMH 443



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 50/259 (19%), Positives = 105/259 (40%), Gaps = 61/259 (23%)

Query: 194 VSVFQEMEKTKEAEP----NEATLVNVLSACSSISALSFGKYVHSYIST----RYDLSVS 245
           VS  Q +  +  + P    ++   + +LS C ++  L   K +HS I          ++S
Sbjct: 8   VSTLQVLSFSDPSPPYKLVHDHPSLTLLSNCKTLQTL---KQIHSQIIKTGLHNTHFALS 64

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
            L+    ++ +   GD+  A+ +F  +   + + W+ +I GL+ +     AL+ +  MI 
Sbjct: 65  KLIEFCAVSPH---GDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMIS 121

Query: 306 NAVFPDDVTFIALISACS------------------------------------HGGLVD 329
           +   P++ TF ++  +C+                                    +G LV+
Sbjct: 122 SGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVN 181

Query: 330 QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN- 388
             L+  K  S++ + V     +  ++  Y   G L+EA     E+P+    S W A+++ 
Sbjct: 182 ARLVFDK--SSMRDAVS----FTALITGYASKGFLDEARELFDEIPVRDVVS-WNAMISG 234

Query: 389 ---ACRIHRNDEMFDRIRQ 404
              + R+      F+ +R+
Sbjct: 235 YAQSGRVEEAMAFFEEMRR 253


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 182/493 (36%), Positives = 285/493 (57%), Gaps = 38/493 (7%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           P   N +TF   +KA +          +H   I+     D+F+ NSL+HFY +   +  A
Sbjct: 235 PFGPNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLA 294

Query: 65  HQIFNSVVF--PDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 119
           + +F  +     D+VSW ++++G  + G+  +A+D+F  +    V PNA T+VSV+SAC+
Sbjct: 295 YLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACA 354

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
             ++  LG+ +  +  RN    N+ + NA +D +++CG +     LF  M KR+VVSWTT
Sbjct: 355 KTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTT 414

Query: 180 MIGGYA-------------------------------ERGFCKEAVSVFQEMEKTKE-AE 207
           +I GYA                               + G  KEA+++F+E++ TK  A 
Sbjct: 415 IIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGAR 474

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
           P++ TL++ LSAC+ + A+  G+++H YI  +  + ++  +  ++I+MY K GDV  AI+
Sbjct: 475 PDQVTLLSTLSACAQLGAMDIGEWIHGYIK-KERIQLNRNLATSLIDMYSKSGDVEKAIE 533

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           VF+ +  KD   WS +I+GLAM+G G  A++LF  M    V P+ VTF  L+ ACSH GL
Sbjct: 534 VFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGL 593

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           VD+G  LF  M  VY +VP+ +HY+C+VD+ GRAG LEEA  FI  MP+    SVWGALL
Sbjct: 594 VDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALL 653

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
            AC IH N E+ ++    L+  +  + G + L+SN +A    WE  +++R ++R  GLKK
Sbjct: 654 GACCIHGNLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKK 713

Query: 448 KTGCSWIEVNPSI 460
           +TGCS IE++ ++
Sbjct: 714 ETGCSSIEIDGTV 726



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/412 (25%), Positives = 202/412 (49%), Gaps = 53/412 (12%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA----HQIFNSVVFPDVVSWTTIISGL 86
           +IHA ++    LHD +  + L  F       FSA     ++F+ +  P++ SW  +I  L
Sbjct: 157 QIHAQMLRTNKLHDPYAASEL--FTAAAFSSFSALDYARKVFDQIPQPNLYSWNILIRAL 214

Query: 87  SKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN 142
           +      +++ +F  +       PN  T   ++ A +      +GKA+H  +++    ++
Sbjct: 215 ATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDD 274

Query: 143 IILDNAILDFYIRCGSLASCGYLFVKMPK---RNVVSWTTMIGGYAERGFCKEAVSVFQE 199
           + + N+++ FY  CG L    YL  +M +   +++VSW +M+ G+ + G+  +A+ +F+ 
Sbjct: 275 VFVLNSLIHFYASCGHL-DLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFER 333

Query: 200 MEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKC 259
           M + +   PN  T+V+V+SAC+    L+ G+ V  YI  R ++ ++  V NA I+M+VKC
Sbjct: 334 M-RNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYID-RNEMMMNLNVCNATIDMFVKC 391

Query: 260 GDVGIAIQVFNMLAYKDKISWSTVISGLA------------------------------- 288
           G+V IA  +F+ +  +D +SW+T+I G A                               
Sbjct: 392 GEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYE 451

Query: 289 MNGCGRQALQLFSLMII--NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 346
            +G  ++AL +F  + +  +   PD VT ++ +SAC+  G +D G  +   +    E + 
Sbjct: 452 QSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKK--ERIQ 509

Query: 347 QMQHYAC-VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
             ++ A  ++DMY ++G +E+A      +    +  VW A++    +H   E
Sbjct: 510 LNRNLATSLIDMYSKSGDVEKAIEVFHSIG-NKDVFVWSAMIAGLAMHGRGE 560


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 176/488 (36%), Positives = 286/488 (58%), Gaps = 46/488 (9%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYV------------ 56
           N YTF   LK+C+      +  +IHAHV++ G + D+FI  SL++ Y             
Sbjct: 128 NSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVF 187

Query: 57  ---TVKDIFS----------------AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAID 97
                +D  S                A Q+F+ +   DVVSW  +I+G ++ G  KEA+ 
Sbjct: 188 DQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALL 247

Query: 98  MFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNEN-----NIILDNAI 149
           +F  +   +V PN +T+VSVLSAC+   +  LG     +S+R+  E+     N+ L NA+
Sbjct: 248 LFEDMRKANVPPNESTIVSVLSACAQSNALDLG-----NSMRSWIEDRGLCSNLKLVNAL 302

Query: 150 LDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN 209
           +D Y +CG L +   LF  M +R+V+SW  MIGGY      KEA+++F+EM  +   EP 
Sbjct: 303 IDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASG-VEPT 361

Query: 210 EATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF 269
           E T +++L +C+ + A+  GK++H+YI+  ++   ++L   ++I++Y KCG++  A QVF
Sbjct: 362 EITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLS-TSLIDLYAKCGNIVAARQVF 420

Query: 270 NMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVD 329
           + +  K   SW+ +I GLAM+G   +A +LFS M  + + P+++TF+ ++SAC H GLVD
Sbjct: 421 DGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVD 480

Query: 330 QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
            G   F +M   Y+I P+ QHY C++D+ GRAGL EEAE+ ++ M ++ + ++WG+LL A
Sbjct: 481 LGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGA 540

Query: 390 CRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKT 449
           CR H   E+ + + + L   +  + G + L+SN +AGA +W+D  +IR  +   G+KK  
Sbjct: 541 CRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVP 600

Query: 450 GCSWIEVN 457
           GC+ IEV+
Sbjct: 601 GCTTIEVD 608



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 128/451 (28%), Positives = 224/451 (49%), Gaps = 45/451 (9%)

Query: 5   PSSYNHYTFTQ---ALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK-- 59
           PSS   Y   Q   +LK  S     +   +IHAH+I+ G  + +F  + L+ F    +  
Sbjct: 18  PSSDPPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSG 77

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLS 116
           DI  A  +FNS+  P++  W ++I GLS       A+  F  +    V+PN+ T   +L 
Sbjct: 78  DISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLK 137

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
           +C+ L S   GK IHAH L+    +++ +  ++++ Y + G + +   +F +   R+ +S
Sbjct: 138 SCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAIS 197

Query: 177 WTTMIGGYAERGFCKEAVSVFQEME------------------KTKEA------------ 206
           +T +I GYA  G+   A  +F EM                   ++KEA            
Sbjct: 198 FTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANV 257

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
            PNE+T+V+VLSAC+  +AL  G  + S+I  R   S   LV NA+I+MY KCGD+  A 
Sbjct: 258 PPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLV-NALIDMYSKCGDLQTAR 316

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
           ++F+ +  +D ISW+ +I G       ++AL LF  M+ + V P ++TF++++ +C+H G
Sbjct: 317 ELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLG 376

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 386
            +D G  +   ++  +  V        ++D+Y + G +  A      M I++  S W A+
Sbjct: 377 AIDLGKWIHAYINKNFNSV-STSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLAS-WNAM 434

Query: 387 LNACRIH----RNDEMFDRIRQDLVNKKGVS 413
           +    +H    +  E+F ++  D +    ++
Sbjct: 435 ICGLAMHGQADKAFELFSKMSSDGIEPNEIT 465


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 172/493 (34%), Positives = 281/493 (56%), Gaps = 54/493 (10%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           L AC+      +  EIH++ I  G   D F+ N+L+  Y     +  A  +FN + F DV
Sbjct: 266 LPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDV 325

Query: 77  VSW-----------------------------------TTIISGLSKCGFHKEAIDMFCG 101
           VSW                                   + +I+G ++ G+ +EA+D F  
Sbjct: 326 VSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQ 385

Query: 102 IDV---KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRN------------LNENNIILD 146
           + +   +PN+ T++S+LSAC+SL +   G   HA+SL+              +  ++++ 
Sbjct: 386 MILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVH 445

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKR--NVVSWTTMIGGYAERGFCKEAVSVFQEM-EKT 203
           NA++D Y +C S  +   +F  +P+R  NVV+WT MIGGYA+ G   +A+ +F EM  K 
Sbjct: 446 NALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKP 505

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS-NLVGNAVINMYVKCGDV 262
               PN  T+  +L AC+ +S+L  GK +H+Y++  ++   S   V N +I+MY KCGDV
Sbjct: 506 YAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDV 565

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
             A  VF+ +  ++++SW++++SG  M+G G++AL +F  M      PDD++F+ L+ AC
Sbjct: 566 DTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYAC 625

Query: 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
           SH G+VDQGL  F  M + Y ++   QHYACV+D+  R+G L++A   I+EMP+E   ++
Sbjct: 626 SHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAI 685

Query: 383 WGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442
           W ALL+ACR+H N E+ +     LV+ K  + G++ L+SN +A A RW+D  +IR  +++
Sbjct: 686 WVALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQLMKK 745

Query: 443 MGLKKKTGCSWIE 455
            G+KK+ GCSW++
Sbjct: 746 SGIKKRPGCSWVQ 758



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 129/471 (27%), Positives = 226/471 (47%), Gaps = 69/471 (14%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML   +  +H+T   ALKAC     ++     H  +   G   ++F+ N+L+  Y     
Sbjct: 140 MLRAGTKPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGS 199

Query: 61  IFSAHQIFNSVV---FPDVVSWTTIISGLSKCGFHKEAIDMFC---------GIDVKPNA 108
           +  A  +F+ +      DV+SW +I++   K    + A+D+F            + + + 
Sbjct: 200 LEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDI 259

Query: 109 NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168
            ++V++L AC+SL +    K IH++++RN    +  + NA++D Y +CGS+     +F  
Sbjct: 260 ISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNV 319

Query: 169 MPKRNVVSWTTM-----------------------------------IGGYAERGFCKEA 193
           M  ++VVSW  M                                   I GYA+RG+ +EA
Sbjct: 320 MEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEA 379

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN------- 246
           +  FQ+M     +EPN  T++++LSAC+S+ ALS G   H+Y   +  LS+ N       
Sbjct: 380 LDTFQQM-ILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGD 438

Query: 247 ----LVGNAVINMYVKCGDVGIAIQVFNMLAYKDK--ISWSTVISGLAMNGCGRQALQLF 300
               +V NA+I+MY KC     A  +FN +  +++  ++W+ +I G A  G    AL+LF
Sbjct: 439 GEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLF 498

Query: 301 SLMIIN--AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA-CVVDM 357
           S MI    AV P+  T   ++ AC+H   +  G  +   ++  +E    +   A C++DM
Sbjct: 499 SEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDM 558

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDE---MFDRIRQ 404
           Y + G ++ A      MP   E S W ++++   +H R  E   +FD++++
Sbjct: 559 YSKCGDVDTARNVFDSMPKRNEVS-WTSMMSGYGMHGRGKEALDIFDKMQK 608



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 5/162 (3%)

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           L   ++  Y+ CG+ +    +  ++     V W  ++  + E G    A+ V   M +  
Sbjct: 85  LGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAG 144

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
             +P+  TL   L AC  + +   G   H  I        +  V NA++ MY + G +  
Sbjct: 145 -TKPDHFTLPYALKACGELPSYRSGSAFHGLICCN-GFESNVFVCNALVAMYSRSGSLED 202

Query: 265 AIQVFNMLAYK---DKISWSTVISGLAMNGCGRQALQLFSLM 303
           A  VF+ +  K   D ISW+++++        R AL LFS M
Sbjct: 203 ASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEM 244



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 5/116 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHD--IFIQNSLLHFYVTVKDIFSAHQ 66
           N YT +  L AC+     +   +IHA+V  +        F+ N L+  Y    D+ +A  
Sbjct: 511 NAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARN 570

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACS 119
           +F+S+   + VSWT+++SG    G  KEA+D+F  +      P+  + + +L ACS
Sbjct: 571 VFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACS 626


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  325 bits (832), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 178/498 (35%), Positives = 286/498 (57%), Gaps = 47/498 (9%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYV---- 56
           M+S     N YTF   LK+C+ +   ++  +IHA V++ G   D +   SL+  Y     
Sbjct: 74  MVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGR 133

Query: 57  ---------------------------TVKDIFSAHQIFNSVVFPDVVSWTTIISG-LSK 88
                                      +  D+ SA ++F+ +   DVVSW  +I+G +  
Sbjct: 134 LEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVEN 193

Query: 89  CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHA-----HSLRNLNE 140
           CG+ +EA+++F  +   +V+P+  TLVSVLSAC+   S +LG+ IH      H   +   
Sbjct: 194 CGY-EEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGS--- 249

Query: 141 NNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEM 200
            ++ + NA +  Y +CG +     LF  +  ++VVSW T+IGGY      KEA+ +FQEM
Sbjct: 250 -SLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEM 308

Query: 201 EKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD-LSVSNLVGNAVINMYVKC 259
            ++ E+ PN+ T+++VL AC+ + A+  G+++H YI  R   ++  + +  ++I+MY KC
Sbjct: 309 LRSGES-PNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKC 367

Query: 260 GDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALI 319
           GD+  A QVFN + +K   SW+ +I G AM+G    A  LFS M  N + PDD+T + L+
Sbjct: 368 GDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLL 427

Query: 320 SACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAE 379
           SACSH GL+D G  +FK+++  Y I P+++HY C++D+ G AGL +EAE  I  MP+E +
Sbjct: 428 SACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPD 487

Query: 380 WSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDE 439
             +W +LL AC++H N E+ +   Q L+  +  + G++ L+SN +A A RWED  +IR+ 
Sbjct: 488 GVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREV 547

Query: 440 IRRMGLKKKTGCSWIEVN 457
           +   G+KK  GCS IE++
Sbjct: 548 LNGKGMKKVPGCSSIEID 565



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 187/387 (48%), Gaps = 41/387 (10%)

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVS 123
           +F +   P+++ W T++ GL+        ++M+  +      PNA T   +L +C+   +
Sbjct: 39  VFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKT 98

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSL---------------ASC-----G 163
            + G+ IHA  ++   E +     +++  Y R G L                SC     G
Sbjct: 99  FEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITG 158

Query: 164 Y-----------LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEAT 212
           Y           +F  + +R+VVSW  MI GY E    +EA+ +F+EM +T    P+E T
Sbjct: 159 YASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTN-VRPDEGT 217

Query: 213 LVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 272
           LV+VLSAC+   ++  G+ +H+ +   +    S  + NA I +Y KCGDV IA  +F  L
Sbjct: 218 LVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGL 277

Query: 273 AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL 332
           + KD +SW+T+I G       ++AL LF  M+ +   P+DVT ++++ AC+H G +D G 
Sbjct: 278 SCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGR 337

Query: 333 ILFKAMSTVYEIVPQMQHY-ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACR 391
            +   +    + V         ++DMY + G +E A      M +    S W A++    
Sbjct: 338 WIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSM-MHKSLSSWNAMIFGFA 396

Query: 392 IHRND----EMFDRIRQDLVNKKGVSV 414
           +H       ++F R+R++ +    +++
Sbjct: 397 MHGRANAAFDLFSRMRKNGIEPDDITL 423



 Score = 41.6 bits (96), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
           A+ VF      + + W+T++ GLA +      L+++  M+     P+  TF  L+ +C+ 
Sbjct: 36  AVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAK 95

Query: 325 GGLVDQGLILFKAMSTVYEIVPQMQHYA--CVVDMYGRAGLLEEA 367
               ++G    +  + V ++  ++  YA   ++ MY R G LE+A
Sbjct: 96  SKTFEEGR---QIHAQVMKLGCELDRYAHTSLISMYARNGRLEDA 137


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  324 bits (830), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 174/493 (35%), Positives = 280/493 (56%), Gaps = 54/493 (10%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           L AC+      +  EIH++ I  G   D F+ N+L+  Y     +  A ++FN + F DV
Sbjct: 266 LPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDV 325

Query: 77  VSW-----------------------------------TTIISGLSKCGFHKEAIDMFCG 101
           VSW                                   + +I+G ++ G  +EA+D F  
Sbjct: 326 VSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQ 385

Query: 102 IDV---KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRN------------LNENNIILD 146
           + +   +PN+ T++S+LSAC+SL +   G  IHA+SL+              +  ++++ 
Sbjct: 386 MILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVY 445

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKR--NVVSWTTMIGGYAERGFCKEAVSVFQEM-EKT 203
           NA++D Y +C S  +   +F  +P+R  NVV+WT MIGGYA+ G   +A+ +F EM  K 
Sbjct: 446 NALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKP 505

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS-NLVGNAVINMYVKCGDV 262
               PN  T+  +L AC+ ++AL  GK +H+Y++  ++   S   V N +I+MY KCGDV
Sbjct: 506 YAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDV 565

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
             A  VF+ +  ++++SW++++SG  M+G G++AL +F  M      PDD++F+ L+ AC
Sbjct: 566 DTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYAC 625

Query: 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
           SH G+VDQGL  F  M   Y++V   +HYACV+D+  R G L++A   I+EMP+E    +
Sbjct: 626 SHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVI 685

Query: 383 WGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442
           W ALL+ACR+H N E+ +     LVN K  + G++ L+SN +A A RW+D  +IR  +++
Sbjct: 686 WVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKK 745

Query: 443 MGLKKKTGCSWIE 455
            G+KK+ GCSW++
Sbjct: 746 SGIKKRPGCSWVQ 758



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 127/471 (26%), Positives = 228/471 (48%), Gaps = 69/471 (14%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML   +  +H+T   ALKAC     +     +H  +   G   ++F+ N+L+  Y     
Sbjct: 140 MLRAGTKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGS 199

Query: 61  IFSAHQIFNSVV---FPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---------KPNA 108
           +  A  +F+ +      DV+SW +I++   K    + A+++F  + +         + + 
Sbjct: 200 LEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDI 259

Query: 109 NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168
            ++V++L AC+SL +    K IH++++RN    +  + NA++D Y +CGS+     +F  
Sbjct: 260 ISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNV 319

Query: 169 MPKRNVVSWTTM-----------------------------------IGGYAERGFCKEA 193
           M  ++VVSW  M                                   I GYA+RG  +EA
Sbjct: 320 MEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEA 379

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN------- 246
           +  FQ+M     +EPN  T++++LSAC+S+ ALS G  +H+Y   +  LS+ N       
Sbjct: 380 LDAFQQM-ILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGD 438

Query: 247 ----LVGNAVINMYVKCGDVGIAIQVFNMLAYKDK--ISWSTVISGLAMNGCGRQALQLF 300
               +V NA+I+MY KC     A  +F+ +  +++  ++W+ +I G A  G    AL++F
Sbjct: 439 GEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIF 498

Query: 301 SLMIIN--AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA-CVVDM 357
           S MI    AV P+  T   ++ AC+H   +  G  +   ++  +E  P +   A C++DM
Sbjct: 499 SEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDM 558

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDE---MFDRIRQ 404
           Y + G ++ A      MP   E S W ++++   +H R  E   +FD++++
Sbjct: 559 YSKCGDVDTARNVFDSMPKRNEVS-WTSMMSGYGMHGRGKEALDIFDKMQK 608



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 73/162 (45%), Gaps = 5/162 (3%)

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           L   ++  Y+ CG+      +  ++     V W  ++  + + G    A+ V   M +  
Sbjct: 85  LGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAG 144

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
             +P+  TL   L AC  + +   G+ +H  I        +  V NA++ MY +CG +  
Sbjct: 145 -TKPDHFTLPYALKACGELPSYCCGRALHGLICCN-GFESNVFVCNALVAMYSRCGSLED 202

Query: 265 AIQVFNMLAYK---DKISWSTVISGLAMNGCGRQALQLFSLM 303
           A  VF+ +  K   D ISW+++++        R AL+LFS M
Sbjct: 203 ASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEM 244



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 84/182 (46%), Gaps = 11/182 (6%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHD--IFIQNSLLHFYVTVKDIFSAHQ 66
           N YT +  L AC+     +   +IHA+V  +        F+ N L+  Y    D+ +A  
Sbjct: 511 NAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARN 570

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVS 123
           +F+S+   + VSWT+++SG    G  KEA+D+F  +      P+  + + +L ACS   S
Sbjct: 571 VFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSH--S 628

Query: 124 HKLGKAIHAHSLRNLNENNIILDN---AILDFYIRCGSLASCGYLFVKMP-KRNVVSWTT 179
             + + ++   +   + + +        ++D   RCG L        +MP + + V W  
Sbjct: 629 GMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVA 688

Query: 180 MI 181
           ++
Sbjct: 689 LL 690


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  323 bits (829), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 176/491 (35%), Positives = 277/491 (56%), Gaps = 35/491 (7%)

Query: 4   CPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFS 63
           C    N +TF   +KA S     +    +H   I+     D++I NSL+ FY    D+  
Sbjct: 120 CEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSM 179

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSS 120
           A ++F  +   DVVSW ++IS  ++    ++A+++F  ++   V PN+ T+V VLSAC+ 
Sbjct: 180 AERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAK 239

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
            +  + G+ + ++  R   + ++ L NA+LD Y +CGS+     LF +MP+R+V SWT M
Sbjct: 240 KLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIM 299

Query: 181 IGGYA-------------------------------ERGFCKEAVSVFQEMEKTKEAEPN 209
           + GYA                               + G  KEA+++F E++ +K A+P+
Sbjct: 300 LDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPD 359

Query: 210 EATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF 269
           E TLV+ LSAC+ + A+  G ++H YI  R  + ++  + +++++MY KCG +  A++VF
Sbjct: 360 EVTLVSTLSACAQLGAIDLGGWIHVYIK-REGIVLNCHLISSLVDMYAKCGSLEKALEVF 418

Query: 270 NMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVD 329
             +  +D   WS +I+GL M+G G+ A+ LF  M    V P+ VTF  ++ ACSH GLVD
Sbjct: 419 YSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVD 478

Query: 330 QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           +G + F  M  VY +VP+M+HYAC+VD+ GRAG LEEA   I EM      SVWGALL A
Sbjct: 479 EGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGA 538

Query: 390 CRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKT 449
           C +H N E+ +     L+  +  + G   L+SN +A   RWE  +++R  +R   LKK+ 
Sbjct: 539 CSLHMNVELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEP 598

Query: 450 GCSWIEVNPSI 460
           GCS IE N ++
Sbjct: 599 GCSSIEANGNV 609



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 110/403 (27%), Positives = 197/403 (48%), Gaps = 46/403 (11%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFS----AHQIFNSVVFPDVVSWTTIISGL 86
           E+HA ++  G   D F  + L  F  +    FS    A  +F+ +  P++ +W T+I   
Sbjct: 43  EVHARMLRTGLFFDPFSASKL--FTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAY 100

Query: 87  SKCGFHKEAIDMFCGIDVK----PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN 142
           +      ++  +F  +  K    PN  T   V+ A S L + ++G A+H  +++     +
Sbjct: 101 ASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMD 160

Query: 143 IILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202
           + + N+++ FY  CG L+    LF  +  ++VVSW +MI  +A+    ++A+ +F +ME+
Sbjct: 161 LYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMER 220

Query: 203 TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 262
            +   PN  T+V VLSAC+    L FG++V SYI  R  + V   + NA+++MY KCG V
Sbjct: 221 -ENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIE-RKGIKVDLTLCNAMLDMYTKCGSV 278

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLA-------------------------------MNG 291
             A ++F+ +  +D  SW+ ++ G A                                NG
Sbjct: 279 DDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNG 338

Query: 292 CGRQALQLFSLMIINAVF-PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQH 350
             ++AL +F+ + ++ +  PD+VT ++ +SAC+  G +D G  +   +     IV     
Sbjct: 339 KPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKR-EGIVLNCHL 397

Query: 351 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
            + +VDMY + G LE+A      +  E +  VW A++    +H
Sbjct: 398 ISSLVDMYAKCGSLEKALEVFYSVE-ERDVYVWSAMIAGLGMH 439


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 178/490 (36%), Positives = 283/490 (57%), Gaps = 34/490 (6%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+S     N +TF   LKAC+    + +A+ +HA  I+ G      +QN++L  YV  + 
Sbjct: 128 MVSAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLGMGPHACVQNAILTAYVACRL 187

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSA 117
           I SA Q+F+ +    +VSW ++I+G SK GF  EAI +F     + V+ +  TLVS+LSA
Sbjct: 188 ILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSA 247

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
            S   +  LG+ +H + +    E + I+ NA++D Y +CG L    ++F +M  ++VVSW
Sbjct: 248 SSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSW 307

Query: 178 TTMIGGYAERGFCKEAVSVF-------------------QEMEKTKEAE----------- 207
           T+M+  YA +G  + AV +F                   QE + T+  E           
Sbjct: 308 TSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVM 367

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
           P++ATLV++LS CS+   L+ GK  H YI     ++VS  + N++I+MY KCG +  AI 
Sbjct: 368 PDDATLVSILSCCSNTGDLALGKQAHCYICDNI-ITVSVTLCNSLIDMYAKCGALQTAID 426

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           +F  +  K+ +SW+ +I  LA++G G +A+++F  M  + ++PD++TF  L+SACSH GL
Sbjct: 427 IFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGL 486

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           VD G   F  M + + I P ++HYAC+VD+ GR G L EA   I++MP++ +  VWGALL
Sbjct: 487 VDMGRYYFDIMISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPVKPDVVVWGALL 546

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
            ACRI+ N E+  +I + L+     + G + L+SN ++ + RW+D  KIR  +   G+KK
Sbjct: 547 GACRIYGNLEIAKQIMKQLLELGRFNSGLYVLLSNMYSESQRWDDMKKIRKIMDDSGIKK 606

Query: 448 KTGCSWIEVN 457
               S+IE++
Sbjct: 607 CRAISFIEID 616


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 170/481 (35%), Positives = 278/481 (57%), Gaps = 35/481 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYV---- 56
           ML C    N YTF   LK+C+     Q+  +IH HV++ G   D F+  SL++ Y     
Sbjct: 123 MLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGE 182

Query: 57  -----------TVKDIFS----------------AHQIFNSVVFPDVVSWTTIISGLSKC 89
                      +++D  S                A ++F  +   D VSW  +I+G ++ 
Sbjct: 183 LGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQS 242

Query: 90  GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
           G  +EA+  F  +   +V PN +T+V+VLSAC+   S +LG  + +    +   +N+ L 
Sbjct: 243 GRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLV 302

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           NA++D Y +CG L     LF  + +++++SW  MIGGY+     KEA+++F++M+++   
Sbjct: 303 NALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSN-V 361

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
           EPN+ T V++L AC+ + AL  GK++H+YI  ++    +  +  ++I+MY KCG++  A 
Sbjct: 362 EPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAK 421

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
           QVF  +  K   SW+ +ISGLAM+G    AL+LF  M      PDD+TF+ ++SACSH G
Sbjct: 422 QVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAG 481

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 386
           LV+ G   F +M   Y+I P++QHY C++D+ GRAGL +EAEA ++ M ++ + ++WG+L
Sbjct: 482 LVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSL 541

Query: 387 LNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446
           L ACR+H N E+ +   + L   +  + G + L+SN +A A RW+D  +IR ++   G+K
Sbjct: 542 LGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMK 601

Query: 447 K 447
           K
Sbjct: 602 K 602



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 132/446 (29%), Positives = 220/446 (49%), Gaps = 50/446 (11%)

Query: 5   PSSYNHYTFTQ---ALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHF--YVTVK 59
           P+S   Y   Q   +L   S     Q   +IH+ +I+ G  +  F  + L+ F       
Sbjct: 21  PTSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFG 80

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSV 114
           ++  A  +F S+  P+   W T+I G S       AID +     CG  V+PN+ T   +
Sbjct: 81  NLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCG--VEPNSYTFPFL 138

Query: 115 LSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC------------ 162
           L +C+ + + + GK IH H L+   E++  +  ++++ Y + G L               
Sbjct: 139 LKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDA 198

Query: 163 --------GY-----------LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
                   GY           LF ++P R+ VSW  MI GYA+ G  +EA++ FQEM++ 
Sbjct: 199 VSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRA 258

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
             A PNE+T+V VLSAC+   +L  G +V S+I      S   LV NA+I+MY KCGD+ 
Sbjct: 259 NVA-PNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLV-NALIDMYSKCGDLD 316

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
            A  +F  +  KD ISW+ +I G +     ++AL LF  M  + V P+DVTF++++ AC+
Sbjct: 317 KARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACA 376

Query: 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 383
           + G +D G  +   +   +  +     +  ++DMY + G +E A+     M  ++  S W
Sbjct: 377 YLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGS-W 435

Query: 384 GALLNACRIHRND----EMFDRIRQD 405
            A+++   +H +     E+F ++R +
Sbjct: 436 NAMISGLAMHGHANMALELFRQMRDE 461


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  322 bits (824), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 177/483 (36%), Positives = 276/483 (57%), Gaps = 35/483 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YTF   +KA +          +H   ++     D+F+ NSL+H Y +  D+ SA ++F
Sbjct: 130 NKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVF 189

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
            ++   DVVSW ++I+G  + G   +A+++F  +   DVK +  T+V VLSAC+ + + +
Sbjct: 190 TTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLE 249

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ + ++   N    N+ L NA+LD Y +CGS+     LF  M +++ V+WTTM+ GYA
Sbjct: 250 FGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYA 309

Query: 186 -------------------------------ERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
                                          + G   EA+ VF E++  K  + N+ TLV
Sbjct: 310 ISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLV 369

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
           + LSAC+ + AL  G+++HSYI  ++ + ++  V +A+I+MY KCGD+  + +VFN +  
Sbjct: 370 STLSACAQVGALELGRWIHSYIK-KHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEK 428

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           +D   WS +I GLAM+GCG +A+ +F  M    V P+ VTF  +  ACSH GLVD+   L
Sbjct: 429 RDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESL 488

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F  M + Y IVP+ +HYAC+VD+ GR+G LE+A  FI  MPI    SVWGALL AC+IH 
Sbjct: 489 FHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHA 548

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           N  + +     L+  +  + G   L+SN +A   +WE+ +++R  +R  GLKK+ GCS I
Sbjct: 549 NLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSI 608

Query: 455 EVN 457
           E++
Sbjct: 609 EID 611



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 169/318 (53%), Gaps = 20/318 (6%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYV--TVKDIFSAHQIFNSVVFPDVVSWTTIISG--- 85
           + H H+I  G   D +  + L       +   +  A ++F+ +  P+  +W T+I     
Sbjct: 48  QTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYAS 107

Query: 86  -----LSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNE 140
                LS   F    +DM       PN  T   ++ A + + S  LG+++H  ++++   
Sbjct: 108 GPDPVLSIWAF----LDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVG 163

Query: 141 NNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEM 200
           +++ + N+++  Y  CG L S   +F  + +++VVSW +MI G+ ++G   +A+ +F++M
Sbjct: 164 SDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKM 223

Query: 201 EKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCG 260
           E +++ + +  T+V VLSAC+ I  L FG+ V SYI     ++V+  + NA+++MY KCG
Sbjct: 224 E-SEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEEN-RVNVNLTLANAMLDMYTKCG 281

Query: 261 DVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALIS 320
            +  A ++F+ +  KD ++W+T++ G A++     A ++ + M       D V + ALIS
Sbjct: 282 SIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQK----DIVAWNALIS 337

Query: 321 ACSHGGLVDQGLILFKAM 338
           A    G  ++ LI+F  +
Sbjct: 338 AYEQNGKPNEALIVFHEL 355


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  322 bits (824), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 178/483 (36%), Positives = 275/483 (56%), Gaps = 35/483 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YTF   +KA +          +H   I+     D+F+ NSL+H Y +  D+ SA ++F
Sbjct: 132 NKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVF 191

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
            ++   DVVSW ++I+G  + G   +A+++F  +   DVK +  T+V VLSAC+ +   +
Sbjct: 192 TTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLE 251

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ + ++   N    N+ L NA+LD Y +CGS+     LF  M +++ V+WTTM+ GYA
Sbjct: 252 FGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYA 311

Query: 186 -------------------------------ERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
                                          + G   EA+ VF E++  K  + N+ TLV
Sbjct: 312 ISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLV 371

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
           + LSAC+ + AL  G+++HSYI  +  + ++  V +A+I+MY KCGD+  A +VFN +  
Sbjct: 372 STLSACAQVGALELGRWIHSYIK-KNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEK 430

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           +D   WS +I GLAM+GCG +A+ +F  M    V P+ VTF  +  ACSH GLVD+   L
Sbjct: 431 RDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESL 490

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F  M + Y IVP+ +HYAC+VD+ GR+G LE+A  FI  MPI    SVWGALL AC+IH 
Sbjct: 491 FYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHA 550

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           N  + +     L+  +  + G   L+SN +A + +W++ +++R  +R  GLKK+ GCS I
Sbjct: 551 NLSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSI 610

Query: 455 EVN 457
           E++
Sbjct: 611 EID 613



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 106/436 (24%), Positives = 211/436 (48%), Gaps = 67/436 (15%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFS----AHQIFNSVVFPDVVSWTTIISGL 86
           + HAH+I  G   D +  + L  F +     F+    A ++F+ +  P+  +W T+I   
Sbjct: 49  QTHAHMIRTGMFSDPYSASKL--FAIAALSSFASLEYARKVFDEIPQPNSFTWNTLIRA- 105

Query: 87  SKCGFHKEAIDMFCGI-----------DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSL 135
                +    D  C I              PN  T   ++ A + + S  LG+++H  ++
Sbjct: 106 -----YASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAI 160

Query: 136 RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVS 195
           ++   +++ + N+++  Y  CG L S   +F  + +++VVSW +MI G+ ++G   +A+ 
Sbjct: 161 KSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALE 220

Query: 196 VFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINM 255
           +F++ME +++ + +  T+V VLSAC+ I  L FG+ V SYI     ++V+  + NA+++M
Sbjct: 221 LFKKME-SEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEEN-RVNVNLTLANAMLDM 278

Query: 256 YVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAM-------------------------- 289
           Y KCG +  A ++F+ +  KD ++W+T++ G A+                          
Sbjct: 279 YTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALI 338

Query: 290 -----NGCGRQALQLF-SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 343
                NG   +AL +F  L +   +  + +T ++ +SAC+  G ++ G  +    S + +
Sbjct: 339 SAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIH---SYIKK 395

Query: 344 IVPQMQHY--ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH----RNDE 397
              +M  Y  + ++ MY + G LE+A      +  + +  VW A++    +H       +
Sbjct: 396 NGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVE-KRDVFVWSAMIGGLAMHGCGSEAVD 454

Query: 398 MFDRIRQDLVNKKGVS 413
           MF ++++  V   GV+
Sbjct: 455 MFYKMQEANVKPNGVT 470


>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
           small; Tetratricopeptide-like helical [Medicago
           truncatula]
          Length = 971

 Score =  322 bits (824), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 165/483 (34%), Positives = 280/483 (57%), Gaps = 36/483 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +++T+   LK C   +     L +  HV+++G   DIF+ N+ +   ++  ++  A+ +F
Sbjct: 157 DNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVF 216

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           N     D+V+W ++I+G  K G   EAI ++  ++   V+PN  T++ ++S+CS +    
Sbjct: 217 NKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLN 276

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LGK  H +   +  E  I L NA++D Y++CG L +   LF  M ++ +VSWTTM+ GYA
Sbjct: 277 LGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYA 336

Query: 186 ERGFC-------------------------------KEAVSVFQEMEKTKEAEPNEATLV 214
             GF                                KEA+++F EM+  +  EP++ T+V
Sbjct: 337 RFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQ-IRTIEPDKVTMV 395

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
           N LSACS + AL  G ++H YI  R+ LS+   +G A+++MY KCG++  A+QVF  +  
Sbjct: 396 NCLSACSQLGALDVGIWIHHYIE-RHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQ 454

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           ++ ++W+ VI GLA++G  + AL  FS MI   + PD++TF+ ++SAC HGGLV++G   
Sbjct: 455 RNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKY 514

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F  MS+ + + P+++HY+C+VD+ GRAG LEEAE  ++ MP+ A+ +V GAL  ACR++ 
Sbjct: 515 FSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYG 574

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           N ++ +R    L+       G + L+++ ++ A  W++    R  +   G++K  GCS +
Sbjct: 575 NVQIGERTAFKLLEIDPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLV 634

Query: 455 EVN 457
           E+N
Sbjct: 635 EIN 637



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 193/404 (47%), Gaps = 41/404 (10%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHF--YVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           +I A ++  G + + F  + L+ F      K++    +I   +   +V SW   I G  +
Sbjct: 75  QIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRIKELNVFSWNAAIRGYVE 134

Query: 89  CGFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
            G  +        M  G  +KP+ +T   +L  C    S  LG  +  H L+   E +I 
Sbjct: 135 SGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIF 194

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           + NA +   + CG L+    +F K   R++V+W +MI G  +RG   EA+ +++EME  K
Sbjct: 195 VHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEK 254

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
              PNE T++ ++S+CS +  L+ GK  H YI   + L  +  + NA+++MYVKCG++  
Sbjct: 255 -VRPNEITMIGMISSCSQVQDLNLGKEFHCYIK-EHGLEFTIPLTNALMDMYVKCGELLT 312

Query: 265 AIQVFNMLAYKDKISWSTVISGLA--------------------------MNGC-----G 293
           A  +F+ +A K  +SW+T++ G A                          ++GC     G
Sbjct: 313 ARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQG 372

Query: 294 RQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
           ++AL LF  M I  + PD VT +  +SACS  G +D G+ +   +   +++   +     
Sbjct: 373 KEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIER-HKLSIDVALGTA 431

Query: 354 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
           +VDMY + G +  A     E+P +     W A++    +H N +
Sbjct: 432 LVDMYAKCGNIARALQVFEEIP-QRNCLTWTAVICGLALHGNAQ 474



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 101/218 (46%), Gaps = 6/218 (2%)

Query: 109 NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGS--LASCGYLF 166
           N L+S+L  C SLV     K I A  +      N    + ++ F     S  L  C  + 
Sbjct: 58  NPLLSILERCKSLVQL---KQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRIL 114

Query: 167 VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 226
            ++ + NV SW   I GY E G  +    +++ M      +P+  T   +L  C    + 
Sbjct: 115 YRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSS 174

Query: 227 SFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
             G  V  ++  ++       V NA I M + CG++ +A  VFN    +D ++W+++I+G
Sbjct: 175 CLGLGVLGHV-LKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITG 233

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
               G   +A++++  M    V P+++T I +IS+CS 
Sbjct: 234 CVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQ 271


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  321 bits (823), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 160/433 (36%), Positives = 267/433 (61%), Gaps = 7/433 (1%)

Query: 32  IHAHVIEYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           +H++ I+   L  ++   N+LL  Y    D+ SA ++F  +    VVSWT++I+G  + G
Sbjct: 374 LHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREG 433

Query: 91  FHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
               AI +F  +    V P+   + S+L+AC+   + K GK +H +   N  E N  + N
Sbjct: 434 LSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSN 493

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           A+ D Y +CGS+     +F  M K++V+SW TMIGGY +     EA+++F EM++  E++
Sbjct: 494 ALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQR--ESK 551

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
           P+  T+  +L AC+S++AL  G+ +H Y + R   S    V NAV++MYVKCG + +A  
Sbjct: 552 PDGTTVACILPACASLAALDKGREIHGY-ALRNGYSEDKYVTNAVVDMYVKCGLLVLARS 610

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           +F+M+  KD +SW+ +I+G  M+G G +A+  F+ M +  + PD+V+FI+++ ACSH GL
Sbjct: 611 LFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGL 670

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           +D+G  +F  M    +I P ++HYAC+VD+  R G L +A  FI+ MPI+ + ++WGALL
Sbjct: 671 LDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALL 730

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
             CRIH + ++ +++ + +   +  + G + L++N +A A++WE+  K+R +I + GLKK
Sbjct: 731 CGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKK 790

Query: 448 KTGCSWIEVNPSI 460
             GCSWIE+   I
Sbjct: 791 NPGCSWIEIKGKI 803



 Score =  191 bits (484), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 205/391 (52%), Gaps = 16/391 (4%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML      N YTF+  LK  +     ++  ++H  + + G      + NSL+ FY   + 
Sbjct: 242 MLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRK 301

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNANTLVSVL 115
           +  A ++F+ +   DV+SW ++ISG  K G     I++F      G+D+  +  T+V+V 
Sbjct: 302 VRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDI--DLATMVNVF 359

Query: 116 SACSSLVSHKLGKAIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV 174
            AC+++ +  LGK +H++S++    +  +  +N +LD Y +CG L S   +F +M ++ V
Sbjct: 360 VACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTV 419

Query: 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
           VSWT+MI GY   G    A+ +F EM K++   P+   + ++L+AC+    L  GK VH 
Sbjct: 420 VSWTSMITGYVREGLSDGAIKLFDEM-KSRGVVPDVYAVTSILNACAINGNLKSGKIVHD 478

Query: 235 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
           YI    +L  ++ V NA+ +MY KCG +  A  VF+ +  KD ISW+T+I G   N    
Sbjct: 479 YIREN-NLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPN 537

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQMQHYAC 353
           +AL LF+ M   +  PD  T   ++ AC+    +D+G  I   A+   Y     + +   
Sbjct: 538 EALTLFAEMQRESK-PDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTN--A 594

Query: 354 VVDMYGRAGLLEEAEAFIREMPIE--AEWSV 382
           VVDMY + GLL  A +    +P +    W+V
Sbjct: 595 VVDMYVKCGLLVLARSLFDMIPNKDLVSWTV 625



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 177/368 (48%), Gaps = 11/368 (2%)

Query: 6   SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAH 65
           S+++   +   L+ C+     +    + + +   G + D  +   L+  YV   D+    
Sbjct: 146 SNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGR 205

Query: 66  QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLV 122
            +F+ +    +  W  +IS  S  G + E+I++F     + +KPN+ T  S+L   +++ 
Sbjct: 206 MVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVA 265

Query: 123 SHKLGKAIHAHSLR-NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
             + G+ +H    +   N  N ++ N+++ FY     +     LF ++  R+V+SW +MI
Sbjct: 266 RVEEGRQVHGLICKLGFNSYNTVV-NSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMI 324

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
            GY + G     + +F +M      + + AT+VNV  AC++I  L  GK +HSY      
Sbjct: 325 SGYVKNGLDDRGIEIFIKM-LVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAAT 383

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
           L       N +++MY KCGD+  AI+VF  +  K  +SW+++I+G    G    A++LF 
Sbjct: 384 LDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFD 443

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA--CVVDMYG 359
            M    V PD     ++++AC+  G +  G I+      + E   +   +    + DMY 
Sbjct: 444 EMKSRGVVPDVYAVTSILNACAINGNLKSGKIVH---DYIRENNLETNSFVSNALTDMYA 500

Query: 360 RAGLLEEA 367
           + G +++A
Sbjct: 501 KCGSMKDA 508



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 5/172 (2%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           L AC+      K  EIH + +  G+  D ++ N+++  YV    +  A  +F+ +   D+
Sbjct: 561 LPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDL 620

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS-SLVSHKLGKAIHA 132
           VSWT +I+G    G+  EAI+ F  +    ++P+  + +S+L ACS S +  +  K  + 
Sbjct: 621 VSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNI 680

Query: 133 HSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIGG 183
                  E N+     ++D   R G+L         MP K +   W  ++ G
Sbjct: 681 MKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCG 732


>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 591

 Score =  321 bits (823), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 174/487 (35%), Positives = 280/487 (57%), Gaps = 41/487 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           ++YT+   LK        ++  +IHA V++ G   D ++ NSL+  Y  +  +    Q+F
Sbjct: 107 DNYTYPYVLKGIGCIGEVREGEKIHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVF 166

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV----KPNANTLVSVLSACSSLVSH 124
             +   D VSW  +ISG  +C   +EA+D++  + +    KPN  T+VS LSAC+ L + 
Sbjct: 167 EEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNL 226

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLAS----------------------- 161
           +LGK IH +    L+   I + NA+LD Y +CG ++                        
Sbjct: 227 ELGKEIHDYIANELDLTPI-MGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGY 285

Query: 162 --CG------YLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATL 213
             CG      YLF + P R+VV WT MI GY +    ++A+++F EM+  +  EP++  +
Sbjct: 286 VICGQLDQARYLFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQ-IRGVEPDKFIV 344

Query: 214 VNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 273
           V +L+ C+ + AL  GK++H+YI     + +  +V  A+I MY KCG +  ++++FN L 
Sbjct: 345 VTLLTGCAQLGALEQGKWIHNYIDEN-RIKMDAVVSTALIEMYAKCGCIEKSLEIFNGLK 403

Query: 274 YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI 333
             D  SW+++I GLAMNG   +AL+LF  M    + PDD+TF+A++SAC H GLV++G  
Sbjct: 404 DMDTTSWTSIICGLAMNGKTSEALELFEAMQTCGLKPDDITFVAVLSACGHAGLVEEGRK 463

Query: 334 LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW---SVWGALLNAC 390
           LF +MS++Y I P ++HY C +D+ GRAGLL+EAE  ++++P +       ++GALL+AC
Sbjct: 464 LFHSMSSIYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPDQNNEIIVPLYGALLSAC 523

Query: 391 RIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTG 450
           R + N +M +R+   L   K        L+++ +A ADRWED  K+R +++ +G+KK  G
Sbjct: 524 RTYGNIDMGERLATALAKVKSSDSSLHTLLASIYASADRWEDVRKVRSKMKDLGIKKVPG 583

Query: 451 CSWIEVN 457
            S IEV+
Sbjct: 584 YSAIEVD 590



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 104/359 (28%), Positives = 176/359 (49%), Gaps = 47/359 (13%)

Query: 12  TFTQALKAC-SLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYV--TVKDIFSAHQIF 68
           T+   LK+C S++   Q    I AH+  +G   D  I N L+ F +  ++ D   A++IF
Sbjct: 10  TYISLLKSCKSMSQLKQ----IQAHIFCFGLQQDRDILNKLMAFSMDSSLGDFNYANRIF 65

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           N +  P +  +  +I    K G  + AI +F  +    V P+  T   VL     +   +
Sbjct: 66  NHIHHPSLFIYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVR 125

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ IHA  ++   E +  + N+++D Y   G +     +F +MP+R+ VSW  MI GY 
Sbjct: 126 EGEKIHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYV 185

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
                +EAV V++ M+     +PNEAT+V+ LSAC+ +  L  GK +H YI+   DL  +
Sbjct: 186 RCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIANELDL--T 243

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR----------- 294
            ++GNA+++MY KCG V +A ++F+ +  K+   W+++++G  +  CG+           
Sbjct: 244 PIMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVI--CGQLDQARYLFERS 301

Query: 295 ----------------------QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
                                  A+ LF  M I  V PD    + L++ C+  G ++QG
Sbjct: 302 PSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQG 360


>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
 gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  321 bits (823), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 172/483 (35%), Positives = 281/483 (58%), Gaps = 36/483 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           ++YT++   K C+         EI   V++ G   D+++ N ++H  V+V +   AH++F
Sbjct: 153 DNYTYSFLFKVCANLVLSYMGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVF 212

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           +     D+VSW ++I+G  +    +EA+ ++  +    VKP+  T++ V+SAC+ L S K
Sbjct: 213 DEGCVRDLVSWNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLK 272

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG+ IH +   +     I L NA++D Y++CG L +   LF  M K+ VVSWTTMI GYA
Sbjct: 273 LGREIHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYA 332

Query: 186 ERGFCK-------------------------------EAVSVFQEMEKTKEAEPNEATLV 214
           + G                                  EA+ +F+EM+ +   +P++ T++
Sbjct: 333 KNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSN-MKPDKVTML 391

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
           + LSACS + AL  G + H+YI  +++LS+   +G A+I+MY KCG++  A+QVFN +  
Sbjct: 392 HCLSACSQLGALDTGMWTHNYIK-KHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPR 450

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           ++ ++W+ +I GLA+ G    A+  FS MI + + PD++TF+ +++AC HGGLV++G   
Sbjct: 451 RNSLTWTAIIGGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKY 510

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F  M + + + PQ +HY+C+V++ GRAGLLEEAE  I+ MP+EA+  VWGAL  AC IHR
Sbjct: 511 FDQMKSRFNLSPQPKHYSCMVNLLGRAGLLEEAEELIKTMPMEADAMVWGALFFACGIHR 570

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           N  + +R    L++      G + L++N +  A +WE+   IR  +   G++K  G S I
Sbjct: 571 NLLIGERAASKLLDLDPHDSGIYVLLANMYREAGKWEEAQNIRKMMMERGVEKTPGSSSI 630

Query: 455 EVN 457
           EVN
Sbjct: 631 EVN 633



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 192/403 (47%), Gaps = 43/403 (10%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYV--TVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           +I A +I  G + D F  + L+ F      +++    +I N++  P+V SW  +I G  +
Sbjct: 71  QIQAQMILTGLILDGFASSRLISFCAISESRNLDYCIKILNNLQNPNVFSWNAVIRGCVE 130

Query: 89  CGFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
               ++ +     M      +P+  T   +   C++LV   +G  I    L+   + ++ 
Sbjct: 131 SENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGFEILGQVLKMGFDKDMY 190

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           L N I+   +  G       +F +   R++VSW ++I GY  R   +EA+ ++Q+M  T+
Sbjct: 191 LYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPREAMGIYQQM-ITE 249

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVG 263
             +P+E T++ V+SAC+ + +L  G+ +H YI  +  +L +S  + NA+++MYVKCGD+ 
Sbjct: 250 HVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKIS--LVNALMDMYVKCGDLE 307

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNG----CGR------------------------- 294
               +F+ +  K  +SW+T+I G A NG     G+                         
Sbjct: 308 AGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANL 367

Query: 295 --QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
             +AL+LF  M  + + PD VT +  +SACS  G +D G+     +   + +   +    
Sbjct: 368 SFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNYIKK-HNLSLDVALGT 426

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN 395
            ++DMY + G + +A     EMP     + W A++    ++ N
Sbjct: 427 ALIDMYAKCGNMTKALQVFNEMPRRNSLT-WTAIIGGLALYGN 468


>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1026

 Score =  321 bits (822), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 165/483 (34%), Positives = 280/483 (57%), Gaps = 36/483 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +++T+   LK C   +     L +  HV+++G   DIF+ N+ +   ++  ++  A+ +F
Sbjct: 157 DNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVF 216

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           N     D+V+W ++I+G  K G   EAI ++  ++   V+PN  T++ ++S+CS +    
Sbjct: 217 NKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLN 276

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LGK  H +   +  E  I L NA++D Y++CG L +   LF  M ++ +VSWTTM+ GYA
Sbjct: 277 LGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYA 336

Query: 186 ERGFC-------------------------------KEAVSVFQEMEKTKEAEPNEATLV 214
             GF                                KEA+++F EM+  +  EP++ T+V
Sbjct: 337 RFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQ-IRTIEPDKVTMV 395

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
           N LSACS + AL  G ++H YI  R+ LS+   +G A+++MY KCG++  A+QVF  +  
Sbjct: 396 NCLSACSQLGALDVGIWIHHYIE-RHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQ 454

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           ++ ++W+ VI GLA++G  + AL  FS MI   + PD++TF+ ++SAC HGGLV++G   
Sbjct: 455 RNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKY 514

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F  MS+ + + P+++HY+C+VD+ GRAG LEEAE  ++ MP+ A+ +V GAL  ACR++ 
Sbjct: 515 FSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYG 574

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           N ++ +R    L+       G + L+++ ++ A  W++    R  +   G++K  GCS +
Sbjct: 575 NVQIGERTAFKLLEIDPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLV 634

Query: 455 EVN 457
           E+N
Sbjct: 635 EIN 637



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 193/404 (47%), Gaps = 41/404 (10%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHF--YVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           +I A ++  G + + F  + L+ F      K++    +I   +   +V SW   I G  +
Sbjct: 75  QIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRIKELNVFSWNAAIRGYVE 134

Query: 89  CGFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
            G  +        M  G  +KP+ +T   +L  C    S  LG  +  H L+   E +I 
Sbjct: 135 SGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIF 194

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           + NA +   + CG L+    +F K   R++V+W +MI G  +RG   EA+ +++EME  K
Sbjct: 195 VHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEK 254

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
              PNE T++ ++S+CS +  L+ GK  H YI   + L  +  + NA+++MYVKCG++  
Sbjct: 255 -VRPNEITMIGMISSCSQVQDLNLGKEFHCYIK-EHGLEFTIPLTNALMDMYVKCGELLT 312

Query: 265 AIQVFNMLAYKDKISWSTVISGLA--------------------------MNGC-----G 293
           A  +F+ +A K  +SW+T++ G A                          ++GC     G
Sbjct: 313 ARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQG 372

Query: 294 RQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
           ++AL LF  M I  + PD VT +  +SACS  G +D G+ +   +   +++   +     
Sbjct: 373 KEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIER-HKLSIDVALGTA 431

Query: 354 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
           +VDMY + G +  A     E+P +     W A++    +H N +
Sbjct: 432 LVDMYAKCGNIARALQVFEEIP-QRNCLTWTAVICGLALHGNAQ 474



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 101/218 (46%), Gaps = 6/218 (2%)

Query: 109 NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGS--LASCGYLF 166
           N L+S+L  C SLV     K I A  +      N    + ++ F     S  L  C  + 
Sbjct: 58  NPLLSILERCKSLVQL---KQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRIL 114

Query: 167 VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 226
            ++ + NV SW   I GY E G  +    +++ M      +P+  T   +L  C    + 
Sbjct: 115 YRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSS 174

Query: 227 SFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
             G  V  ++  ++       V NA I M + CG++ +A  VFN    +D ++W+++I+G
Sbjct: 175 CLGLGVLGHV-LKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITG 233

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
               G   +A++++  M    V P+++T I +IS+CS 
Sbjct: 234 CVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQ 271


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  321 bits (822), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 168/452 (37%), Positives = 273/452 (60%), Gaps = 5/452 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           ++YTF   +++C++    ++  E+H +++++G   D+F+Q+SL+  Y    +      +F
Sbjct: 127 DNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVF 186

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHK 125
             +V  ++VSWT +I+G  +  + KE + +F    G   +PNA TLVSVL AC+ L    
Sbjct: 187 GEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLN 246

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LGK IH + ++   + ++ L NA++  Y +CG++ +   LF  M  +N+VSW  MI  Y 
Sbjct: 247 LGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYE 306

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +      AV +F+ M+  K  + +  T+V+V+SAC+S+ AL+ G+++H  +  R  L ++
Sbjct: 307 QNNAGANAVKLFRRMQAEK-VDFDYITMVSVISACASLGALNTGRWMHELVK-RKGLEIN 364

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             + NA+I+MY KCG++ +A +VF  L  +  +SW+++I   A +G G  AL+LFS M  
Sbjct: 365 VSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKD 424

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             V P+  TF A+ +AC H GLV++G   F++M   Y I+P ++H AC+VD+ GRAG L 
Sbjct: 425 EGVKPNSFTFAAVFTACRHSGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLM 484

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EA  FI +MP+E + SVWGALL +CRIH N E+ + + + L      +V  + LMSN +A
Sbjct: 485 EAYEFIDKMPVEPDVSVWGALLGSCRIHSNLELAELVAEKLFLLDPQTVTFYVLMSNIYA 544

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            A RWED  ++R  +    LKK  G S +EVN
Sbjct: 545 EAGRWEDAARLRKLMEERELKKIPGHSLVEVN 576



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 115/416 (27%), Positives = 212/416 (50%), Gaps = 27/416 (6%)

Query: 6   SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFS-A 64
           ++Y+  +F   L  CS + P      IHA V+  G   ++ +   L+     +      A
Sbjct: 25  TNYHSRSFNYLLNCCS-SLPDLS--RIHALVVTNGCGQNLLLSTKLIITACCLAPTMDYA 81

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSL 121
            ++F+ +   DV  W T+I G +  G  +EA+ ++    G  + P+  T   V+ +C+ L
Sbjct: 82  RKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVL 141

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
            + + GK +H + +++  ++++ + ++++  Y + G       +F +M  RN+VSWT +I
Sbjct: 142 SALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVI 201

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRY 240
            GY +  + KE + VF+EM  +   +PN  TLV+VL AC+ +  L+ GK +H Y I    
Sbjct: 202 AGYVQNRYFKEGLGVFREMVGSG-TQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGV 260

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
           D  VS  + NA+I +Y KCG+V  A  +F+ +  ++ +SW+ +I+    N  G  A++LF
Sbjct: 261 DPDVS--LTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLF 318

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQG-----LILFKAMSTVYEIVPQMQHYACVV 355
             M    V  D +T +++ISAC+  G ++ G     L+  K +     I   +      +
Sbjct: 319 RRMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNAL------I 372

Query: 356 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDRIRQDLV 407
           DMY + G ++ A      +P  +  S W +++ AC  H + E    +F R++ + V
Sbjct: 373 DMYAKCGNIDLAREVFERLPCRSVVS-WTSMIGACASHGHGEDALKLFSRMKDEGV 427


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 170/453 (37%), Positives = 265/453 (58%), Gaps = 5/453 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T +  L  C L      AL +H + +++G   ++F+ N+++  Y  +  +    ++F+ +
Sbjct: 172 TVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGM 231

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              D+V+W +IISG  + G    A++MFCG+    V P+  TL+S+ SA +       G+
Sbjct: 232 SSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGR 291

Query: 129 AIHAHSLR-NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           ++H + +R   +  +II  NAI+D Y +   + +   +F  MP R+ VSW T+I GY + 
Sbjct: 292 SVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQN 351

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G   EA+ V+  M+K +  +P + T V+VL A S + AL  G  +H+ +S +  L++   
Sbjct: 352 GLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHA-LSIKTGLNLDVY 410

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           VG  VI++Y KCG +  A+ +F     +    W+ VISG+ ++G G +AL LFS M    
Sbjct: 411 VGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEG 470

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           + PD VTF++L++ACSH GLVDQG   F  M T Y I P  +HYAC+VDM+GRAG L++A
Sbjct: 471 ISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDA 530

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
             FIR MPI+ + ++WGALL ACRIH N EM     Q+L      +VG + LMSN +A  
Sbjct: 531 FDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKV 590

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            +W+  +++R  +RR  L+K  G S IEV  S+
Sbjct: 591 GKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSV 623



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 110/413 (26%), Positives = 213/413 (51%), Gaps = 17/413 (4%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFN 69
           +TF   L+A   A     A ++HA  +  G L  D F   +L+H Y+    +  A++ F+
Sbjct: 72  FTFPPLLRA---AQGPGTAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFD 128

Query: 70  SVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKL 126
            +   DV +W  ++SGL +     EA+ +F  +    V  +A T+ SVL  C  L    L
Sbjct: 129 EMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRAL 188

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
             A+H +++++  ++ + + NA++D Y + G L     +F  M  R++V+W ++I G+ +
Sbjct: 189 ALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQ 248

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
            G    AV +F  M  +    P+  TL+++ SA +    +  G+ VH Y+  R    V +
Sbjct: 249 GGQVASAVEMFCGMRDSG-VSPDVLTLLSLASAIAQCGDICGGRSVHCYM-VRRGWDVGD 306

Query: 247 LV-GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
           ++ GNA+++MY K   +  A ++F+ +  +D +SW+T+I+G   NG   +A+ ++  M  
Sbjct: 307 IIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQK 366

Query: 306 N-AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
           +  + P   TF++++ A SH G + QG  +  A+S    +   +    CV+D+Y + G L
Sbjct: 367 HEGLKPIQGTFVSVLPAYSHLGALQQGTRM-HALSIKTGLNLDVYVGTCVIDLYAKCGKL 425

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQDLVNKKGVS 413
           +EA     + P  +    W A+++   +H +      +F +++Q+ ++   V+
Sbjct: 426 DEAMLLFEQTPRRST-GPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVT 477


>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 614

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 174/487 (35%), Positives = 278/487 (57%), Gaps = 41/487 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           ++YT+   LK        ++  ++HA V++ G   D ++ NS +  Y  +  +    Q+F
Sbjct: 107 DNYTYPYVLKGIGCIGEVREGEKVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVF 166

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAID----MFCGIDVKPNANTLVSVLSACSSLVSH 124
             +   D VSW  +ISG  +C   +EA+D    M+   + KPN  T+VS LSAC+ L + 
Sbjct: 167 EEMPDRDAVSWNIMISGYVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNL 226

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLAS----------------------- 161
           +LGK IH +    L+   I + NA+LD Y +CG ++                        
Sbjct: 227 ELGKEIHDYIASELDLTTI-MGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGY 285

Query: 162 --CGYL------FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATL 213
             CG L      F + P R++V WT MI GY +    +E +++F EM+  +  +P++  +
Sbjct: 286 VICGQLDQARNLFERSPSRDIVLWTAMINGYVQFNRFEETIALFGEMQ-IRGVKPDKFIV 344

Query: 214 VNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 273
           V +L+ C+   AL  GK++H+YI     + V  +VG A+I MY KCG +  + ++FN L 
Sbjct: 345 VTLLTGCAQSGALEQGKWIHNYIDEN-RIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLK 403

Query: 274 YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI 333
            KD  SW+++I GLAMNG   +AL+LF  M    + PDD+TF+A++SACSH GLV++G  
Sbjct: 404 EKDTTSWTSIICGLAMNGKPSEALELFKAMQTCGLKPDDITFVAVLSACSHAGLVEEGRK 463

Query: 334 LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW---SVWGALLNAC 390
           LF +MS++Y I P ++HY C +D+ GRAGLL+EAE  ++++P +       ++GALL+AC
Sbjct: 464 LFHSMSSMYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPAQNNEIIVPLYGALLSAC 523

Query: 391 RIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTG 450
           R + N +M +R+   L   K        L+++ +A ADRWED  K+R++++ +G+KK  G
Sbjct: 524 RTYGNIDMGERLATALAKVKSSDSSLHTLLASIYASADRWEDVRKVRNKMKDLGIKKVPG 583

Query: 451 CSWIEVN 457
            S IEV+
Sbjct: 584 YSAIEVD 590



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 187/393 (47%), Gaps = 44/393 (11%)

Query: 12  TFTQALKAC-SLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYV--TVKDIFSAHQIF 68
           T+   LK+C S++   Q    I AH+   G   D    N L+ F +  ++ D   A++IF
Sbjct: 10  TYISLLKSCKSMSQLKQ----IQAHIFCVGLQQDRDTLNKLMAFSMDSSLGDFNYANRIF 65

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           N +  P +  +  +I    K G  + AI +F  +    V P+  T   VL     +   +
Sbjct: 66  NYIHDPSLFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGEVR 125

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ +HA  ++   E +  + N+ +D Y   G +     +F +MP R+ VSW  MI GY 
Sbjct: 126 EGEKVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYV 185

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
                +EAV V++ M      +PNEAT+V+ LSAC+ +  L  GK +H YI++  DL+  
Sbjct: 186 RCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIASELDLTT- 244

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA--------- 296
            ++GNA+++MY KCG V +A ++F+ +  K+   W+++++G  + G   QA         
Sbjct: 245 -IMGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSPS 303

Query: 297 ----------------------LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
                                 + LF  M I  V PD    + L++ C+  G ++QG  +
Sbjct: 304 RDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQGKWI 363

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
              +      V  +   A +++MY + G +E++
Sbjct: 364 HNYIDENRIKVDAVVGTA-LIEMYAKCGCIEKS 395


>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
          Length = 514

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 165/429 (38%), Positives = 266/429 (62%), Gaps = 5/429 (1%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           IH H ++ G    +F+ N+L+H Y     +  A ++F+ ++  D+VSW T+I G S+   
Sbjct: 46  IHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNK 105

Query: 92  HKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148
           +KE + +F  +   ++K +A T+V ++ ACS L   +   ++  +   N  E ++ L N 
Sbjct: 106 YKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNT 165

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
           ++D Y R G+L +   LF  MPKR+V+SWT+MI GY++     +AV +FQEM   K  +P
Sbjct: 166 LIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAK-VKP 224

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           ++ T+ +VLSAC+ +  L  G  VH YI  R+ +     VGN++I+MY KCG V  A++V
Sbjct: 225 DKVTVASVLSACAHLGKLDVGWAVHHYIR-RHGVQADIYVGNSLIDMYCKCGMVEKALEV 283

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F+ +  KD +SW++VISGLA+NG    AL LFS M+   V P   TF+ ++ AC+H GLV
Sbjct: 284 FHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLV 343

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
           ++GL  F++M +V+ +VP M+HY CVVD+  R+G +++A  FI++MPI  +  VW  LL+
Sbjct: 344 NKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLS 403

Query: 389 ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
           AC++H N  + +   + L+       G + L+SNT+AG DRW+D  K+R+ +    ++K 
Sbjct: 404 ACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKP 463

Query: 449 TGCSWIEVN 457
           +G S IEV+
Sbjct: 464 SGSSSIEVD 472



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 141/260 (54%), Gaps = 4/260 (1%)

Query: 114 VLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
           V++  +++ +  +  +IH H+L+   E+ + + NA++  Y  CG L     +F  M  R+
Sbjct: 30  VVALTTNINASTISSSIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRD 89

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
           +VSW T+I GY++    KE + +F  M      + +  T+V ++ ACS +    F   + 
Sbjct: 90  LVSWNTLICGYSQYNKYKEVLRLFDAM-TAANIKADAVTMVKIILACSHLGDWEFADSMV 148

Query: 234 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG 293
            YI    +L +   +GN +I+MY + G++  A ++F+ +  +D ISW+++I+G +     
Sbjct: 149 KYIKEN-NLEIDVYLGNTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQF 207

Query: 294 RQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
             A++LF  M+   V PD VT  +++SAC+H G +D G  +   +   + +   +     
Sbjct: 208 SDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRR-HGVQADIYVGNS 266

Query: 354 VVDMYGRAGLLEEA-EAFIR 372
           ++DMY + G++E+A E F R
Sbjct: 267 LIDMYCKCGMVEKALEVFHR 286


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 168/486 (34%), Positives = 275/486 (56%), Gaps = 36/486 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YTF    K  +     +   ++H HV+++G  +++F+  +L+  Y+    + +A  +F
Sbjct: 138 DRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVF 197

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHK 125
           +     DV++W  IIS  +K G  +E+  +F  ++ K   P   TLV VLSACS L   +
Sbjct: 198 DVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLR 257

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC--------------------GY- 164
            GK +H++      E+N++L+NA++D Y  CG + S                     G+ 
Sbjct: 258 TGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFT 317

Query: 165 ----------LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
                      F KMP+++ VSWT MI GY      KEA+ +F+ M+ T   +P+E T+V
Sbjct: 318 NLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQAT-NVKPDEFTMV 376

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
           +VL+AC+ + AL  G+++ +YI  R  +     V NA+I+MY KCGDV  A  +F  ++ 
Sbjct: 377 SVLTACAHLGALELGEWIRTYID-RNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQ 435

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           +DK +W+ +I GLA+NG G +AL +FS M+  ++ PD++T+I ++SAC+H GLVD+G   
Sbjct: 436 RDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKY 495

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F  M++ + I P + HY C+VD+  RAG L+EA   I  MPI+A   VWGALL  CR++R
Sbjct: 496 FLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYR 555

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
             +M + + + ++  +  +   + L+ N +A   RW D  ++R  +   G+KK  GCS I
Sbjct: 556 ESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLI 615

Query: 455 EVNPSI 460
           E+N  +
Sbjct: 616 EMNGRV 621



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 110/395 (27%), Positives = 201/395 (50%), Gaps = 44/395 (11%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVK--DIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           ++H   I+ G   +  +QN ++ F  T +  D   A ++F+ +  P++  W T+I G S+
Sbjct: 57  QVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSR 116

Query: 89  CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
             F +  + ++  +    VKP+  T   +    +  ++ + G+ +H H L++  + N+ +
Sbjct: 117 LDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFV 176

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
             A++  Y+ CG L +   +F   PK +V++W  +I  Y + G  +E+  +F  ME  K+
Sbjct: 177 HTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMED-KQ 235

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV-SNLV-GNAVINMYVKCGDVG 263
             P   TLV VLSACS +  L  GK VHSY+    +  V SNLV  NA+I+MY  CG++ 
Sbjct: 236 VLPTTVTLVLVLSACSKLKDLRTGKKVHSYVK---NCKVESNLVLENAMIDMYADCGEMD 292

Query: 264 IAIQVFNMLAYKDKISWSTVISGLA--------------------------MNGCGR--- 294
            A+ +F  +  +D ISW+T++SG                            ++G  R   
Sbjct: 293 SALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNR 352

Query: 295 --QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
             +AL+LF  M    V PD+ T +++++AC+H G ++ G  + +      +I   +    
Sbjct: 353 FKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWI-RTYIDRNKIKNDLFVRN 411

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
            ++DMY + G +++AE+  REM    +++ W A++
Sbjct: 412 ALIDMYFKCGDVDKAESIFREMSQRDKFT-WTAMI 445


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  319 bits (817), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 168/486 (34%), Positives = 275/486 (56%), Gaps = 36/486 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YTF    K  +     +   ++H HV+++G  +++F+  +L+  Y+    + +A  +F
Sbjct: 117 DRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVF 176

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHK 125
           +     DV++W  IIS  +K G  +E+  +F  ++ K   P   TLV VLSACS L   +
Sbjct: 177 DVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLR 236

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC--------------------GY- 164
            GK +H++      E+N++L+NA++D Y  CG + S                     G+ 
Sbjct: 237 TGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFT 296

Query: 165 ----------LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
                      F KMP+++ VSWT MI GY      KEA+ +F+ M+ T   +P+E T+V
Sbjct: 297 NLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATN-VKPDEFTMV 355

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
           +VL+AC+ + AL  G+++ +YI  R  +     V NA+I+MY KCGDV  A  +F  ++ 
Sbjct: 356 SVLTACAHLGALELGEWIRTYID-RNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQ 414

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           +DK +W+ +I GLA+NG G +AL +FS M+  ++ PD++T+I ++SAC+H GLVD+G   
Sbjct: 415 RDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKY 474

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F  M++ + I P + HY C+VD+  RAG L+EA   I  MPI+A   VWGALL  CR++R
Sbjct: 475 FLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYR 534

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
             +M + + + ++  +  +   + L+ N +A   RW D  ++R  +   G+KK  GCS I
Sbjct: 535 ESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLI 594

Query: 455 EVNPSI 460
           E+N  +
Sbjct: 595 EMNGRV 600



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/395 (27%), Positives = 201/395 (50%), Gaps = 44/395 (11%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVK--DIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           ++H   I+ G   +  +QN ++ F  T +  D   A ++F+ +  P++  W T+I G S+
Sbjct: 36  QVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSR 95

Query: 89  CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
             F +  + ++  +    VKP+  T   +    +  ++ + G+ +H H L++  + N+ +
Sbjct: 96  LDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFV 155

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
             A++  Y+ CG L +   +F   PK +V++W  +I  Y + G  +E+  +F  ME  K+
Sbjct: 156 HTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMED-KQ 214

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV-SNLV-GNAVINMYVKCGDVG 263
             P   TLV VLSACS +  L  GK VHSY+    +  V SNLV  NA+I+MY  CG++ 
Sbjct: 215 VLPTTVTLVLVLSACSKLKDLRTGKKVHSYVK---NCKVESNLVLENAMIDMYADCGEMD 271

Query: 264 IAIQVFNMLAYKDKISWSTVISGLA--------------------------MNGCGR--- 294
            A+ +F  +  +D ISW+T++SG                            ++G  R   
Sbjct: 272 SALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNR 331

Query: 295 --QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
             +AL+LF  M    V PD+ T +++++AC+H G ++ G  + +      +I   +    
Sbjct: 332 FKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWI-RTYIDRNKIKNDLFVRN 390

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
            ++DMY + G +++AE+  REM    +++ W A++
Sbjct: 391 ALIDMYFKCGDVDKAESIFREMSQRDKFT-WTAMI 424


>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
 gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
          Length = 513

 Score =  319 bits (817), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 159/453 (35%), Positives = 277/453 (61%), Gaps = 9/453 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +TF   LK+C+      +  ++H  +I+ G + +I+++NSL+HFY   K    A ++F
Sbjct: 33  DMFTFPAVLKSCAKFVGIGEGRQVHGVIIKMGFVCNIYVENSLVHFYSVCKRFGDASRVF 92

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
           + ++  DVVSWT +ISG  + G   EA+ +F  +DV+PNA T VSVL AC       +GK
Sbjct: 93  DEMLVRDVVSWTGVISGYVRAGLFDEAVGLFLRMDVEPNAATFVSVLVACGRKGYLSVGK 152

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IH  S ++     + + NA++D Y++CG L     +F ++ ++++VSWT++I G  +  
Sbjct: 153 GIHGLSFKSAFGVGLEVSNALMDMYVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCN 212

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI---STRYDLSVS 245
             KEA+ +FQ+M+ +   EP+   L +VLSAC+ + AL +G++VH +I   + ++D+   
Sbjct: 213 CPKEALELFQDMQSSG-IEPDGIILTSVLSACARLGALDYGRWVHEHIDRKAIKWDIQ-- 269

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             +G A+++MY KCG + +++Q+FN + +K+ ++W+ +++GLAM+G   + L+LF  M+ 
Sbjct: 270 --IGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTWNALLNGLAMHGHAYKVLELFEEMVR 327

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAM-STVYEIVPQMQHYACVVDMYGRAGLL 364
             + P++VTF+A+++AC H GLV++G   F  M    Y + P+++HY C+VD+  RA LL
Sbjct: 328 VGMRPNEVTFLAILTACCHCGLVNEGRQYFNWMKGQQYNLPPRLEHYGCMVDLLCRARLL 387

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           +EA    + MP+  +  + GALL+AC+ + N E+   I    V       G + L+SN  
Sbjct: 388 DEALELTKAMPMSPDVRIMGALLSACKENGNTELPQEILDRFVELDSHDSGVYVLLSNIH 447

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           A   RW+D  +IR  ++  G+KK  G + IE++
Sbjct: 448 AINQRWDDVTRIRRLMKEKGIKKPPGSTVIELD 480



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/288 (35%), Positives = 153/288 (53%), Gaps = 7/288 (2%)

Query: 106 PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYL 165
           P+  T  +VL +C+  V    G+ +H   ++     NI ++N+++ FY  C        +
Sbjct: 32  PDMFTFPAVLKSCAKFVGIGEGRQVHGVIIKMGFVCNIYVENSLVHFYSVCKRFGDASRV 91

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
           F +M  R+VVSWT +I GY   G   EAV +F  M    + EPN AT V+VL AC     
Sbjct: 92  FDEMLVRDVVSWTGVISGYVRAGLFDEAVGLFLRM----DVEPNAATFVSVLVACGRKGY 147

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285
           LS GK +H  +S +    V   V NA+++MYVKCG +  A QVF+ LA KD +SW+++IS
Sbjct: 148 LSVGKGIHG-LSFKSAFGVGLEVSNALMDMYVKCGCLPGAKQVFDELAEKDIVSWTSIIS 206

Query: 286 GLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 345
           GL    C ++AL+LF  M  + + PD +   +++SAC+  G +D G  + + +     I 
Sbjct: 207 GLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACARLGALDYGRWVHEHIDR-KAIK 265

Query: 346 PQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
             +Q    +VDMY + G +E +      MP       W ALLN   +H
Sbjct: 266 WDIQIGTAMVDMYAKCGCIEMSMQIFNGMP-HKNVLTWNALLNGLAMH 312



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 101/218 (46%), Gaps = 15/218 (6%)

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
            +  ++ GYA     K A  V++ + K     P+  T   VL +C+    +  G+ VH  
Sbjct: 1   PFNALVSGYAIGDRPKTAFLVYRRIVKDGFL-PDMFTFPAVLKSCAKFVGIGEGRQVHGV 59

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
           I  +     +  V N++++ Y  C   G A +VF+ +  +D +SW+ VISG    G   +
Sbjct: 60  I-IKMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDE 118

Query: 296 ALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL----ILFKAMSTVYEIVPQMQHY 351
           A+ LF  M +    P+  TF++++ AC   G +  G     + FK+   V      ++  
Sbjct: 119 AVGLFLRMDVE---PNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGV-----GLEVS 170

Query: 352 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
             ++DMY + G L  A+    E+  E +   W ++++ 
Sbjct: 171 NALMDMYVKCGCLPGAKQVFDELA-EKDIVSWTSIISG 207


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  318 bits (816), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 172/464 (37%), Positives = 275/464 (59%), Gaps = 9/464 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML   +  ++Y+F   LKAC+      K  EIH+  ++ G   D+F+QN+L+  + +   
Sbjct: 118 MLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGA 177

Query: 61  IFSAHQIFN--SVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSV 114
           + +A  +F+    +  DVVSW ++ISG  +   ++ A+ +F  +     + P+  TLVS 
Sbjct: 178 VEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSA 237

Query: 115 LSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV 174
           LS C  L    LGK IH     +    ++ + ++++D Y +CG +     +F ++P RN 
Sbjct: 238 LSVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNT 297

Query: 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
           V WT+MI GYA+    KEA+ +F+EM+    A  + AT+  VLSAC    AL+ G+++H 
Sbjct: 298 VCWTSMIAGYAQSDLFKEAIELFREMQIGGFAA-DAATIACVLSACGHWGALAQGRWIHL 356

Query: 235 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
           Y   R  + +     NA+I MY KCGD+  A+++F+ L   D  SWS VISGLAMNG   
Sbjct: 357 YCE-RNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESD 415

Query: 295 QALQLFSLM-IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
           +AL LFS M +I+ + P+++TF+ ++ AC+HGG VD+GL  F AM+ +Y + P ++HY C
Sbjct: 416 KALHLFSQMEMISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGC 475

Query: 354 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVS 413
           +VD+ GRA LL EAE FIR +PI+ +  +W +LL ACR H N E+ +   + +   +   
Sbjct: 476 MVDLLGRANLLVEAEKFIRTLPIQPDVVIWRSLLFACRNHGNIELAEFAAKQIEELEPRR 535

Query: 414 VGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            G   L+SN +A A RW D  ++R ++    +KK+ GCS++E++
Sbjct: 536 CGARVLLSNVYASASRWGDVKRVRKDMATQRIKKQPGCSFVEID 579



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 168/318 (52%), Gaps = 10/318 (3%)

Query: 21  SLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFS-AHQIFNSVVFPDVVSW 79
           +L+HP +   +I +H I  G   D  + + LL++ ++    F+ +  +F  +  P+V SW
Sbjct: 37  NLSHP-RSFNQILSHAIASGVFRDPVVSSKLLYYSLSHDHDFAFSRTLFFQIHKPNVFSW 95

Query: 80  TTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR 136
             +    S+  F  E I ++  +      P+  +   VL AC+ L     G+ IH+ +L+
Sbjct: 96  NFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLK 155

Query: 137 NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK--RNVVSWTTMIGGYAERGFCKEAV 194
                ++ + NA++  +  CG++ +   +F  +P   R+VVSW +MI GY +    + A+
Sbjct: 156 LGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELAL 215

Query: 195 SVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS-YISTRYDLSVSNLVGNAVI 253
            VF E+       P+E TLV+ LS C  +  L  GK +H  +  + + L V   VG+++I
Sbjct: 216 KVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDV--FVGSSLI 273

Query: 254 NMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDV 313
           +MY KCG +  A +VF+ + +++ + W+++I+G A +   ++A++LF  M I     D  
Sbjct: 274 DMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAA 333

Query: 314 TFIALISACSHGGLVDQG 331
           T   ++SAC H G + QG
Sbjct: 334 TIACVLSACGHWGALAQG 351


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  318 bits (815), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 163/488 (33%), Positives = 285/488 (58%), Gaps = 40/488 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVT------VKDIF 62
           N +TF   LK+C+ +   ++  +IH HV++ G   D+++  SL+  Y         + +F
Sbjct: 74  NFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVF 133

Query: 63  -------------------------SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAID 97
                                    SA ++F+ +   DVVSW  +ISG ++ G +K+A++
Sbjct: 134 DRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALE 193

Query: 98  MF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
           +F      +VKP+ +T+ +V+SAC+   S +LG+ +H+    +   +N+ + NA++D Y 
Sbjct: 194 LFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYS 253

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           +CG + +   L   +  ++V+SW T+IGGY      KEA+ +FQEM ++ E  PN+ T++
Sbjct: 254 KCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET-PNDVTML 312

Query: 215 NVLSACSSISALSFGKYVHSYISTRYD---LSVSNLVGNAVINMYVKCGDVGIAIQVFNM 271
           ++L AC+ + A+  G+++H YI  +     ++ ++ +  ++I+MY KCGD+  A QV + 
Sbjct: 313 SILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDS 372

Query: 272 LAYKDKIS-WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQ 330
            A+   +S W+ +I G AM+G    A  +FS M  N + PDD+TF+ L+SACSH G++D 
Sbjct: 373 SAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDL 432

Query: 331 GLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 390
           G  +F++M   Y I P+++HY C++D+ G +GL +EAE  I  MP+E +  +W +LL AC
Sbjct: 433 GRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKAC 492

Query: 391 RIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKT- 449
           +IH N E+ +   + L+  +  + G++ L+SN +A A +W +  KIR  +   G+KKK  
Sbjct: 493 KIHGNLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVP 552

Query: 450 GCSWIEVN 457
           GCS IE++
Sbjct: 553 GCSSIEID 560



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 105/403 (26%), Positives = 195/403 (48%), Gaps = 46/403 (11%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSS 120
           A  +F ++  P+ + W  +  G +       A+ ++     + + PN  T   +L +C+ 
Sbjct: 28  AISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAK 87

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
             + K G+ IH H L+   + ++ +  +++  Y + G L     +F +   R+VVS+T +
Sbjct: 88  SKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTAL 147

Query: 181 IGGYAERGFC-------------------------------KEAVSVFQEMEKTKEAEPN 209
           I GYA RG+                                K+A+ +F+EM KT   +P+
Sbjct: 148 ITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTN-VKPD 206

Query: 210 EATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF 269
           E+T+  V+SAC+   ++  G+ VHS+I+     S   +V NA+I++Y KCG+V  A ++ 
Sbjct: 207 ESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIV-NALIDLYSKCGEVETACELL 265

Query: 270 NMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVD 329
             L+ KD ISW+T+I G       ++AL LF  M+ +   P+DVT ++++ AC+H G +D
Sbjct: 266 EGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAID 325

Query: 330 QG----LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 385
            G    + + K +  V  +         ++DMY + G ++ A             S W A
Sbjct: 326 IGRWIHVYIDKKLKGVV-VTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNA 384

Query: 386 LLNACRIH-RNDEMFD---RIRQDLVNKKGVS-VGTFALMSNT 423
           ++    +H R +  FD   R+R++ +    ++ VG  +  S++
Sbjct: 385 MIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHS 427


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  318 bits (814), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 172/492 (34%), Positives = 277/492 (56%), Gaps = 54/492 (10%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           L AC       +  E+H + I  G   D+F+ N+L+  Y     + +A ++FN + F DV
Sbjct: 272 LPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDV 331

Query: 77  VSWTTIISGLSKCGFHKEAIDMF-------CGIDVK------------------------ 105
           VSW  +++G S+ G  + A ++F         +DV                         
Sbjct: 332 VSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQ 391

Query: 106 -------PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNL----------NENNIILDNA 148
                  PN  T++SVLSAC+SL +   G  IHA+SL+N            + ++++ NA
Sbjct: 392 MIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNA 451

Query: 149 ILDFYIRCGSLASCGYLFVKMP--KRNVVSWTTMIGGYAERGFCKEAVSVFQEM-EKTKE 205
           ++D Y +C S  +   +F  +P  +RNVV+WT MIGG+A+ G   +A+ +F EM  +   
Sbjct: 452 LIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYG 511

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYI--STRYDLSVSNLVGNAVINMYVKCGDVG 263
             PN  T+  +L AC+ ++A+  GK +H+Y+    RY+ S +  V N +I+MY KCGDV 
Sbjct: 512 VAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYE-SSAYFVANCLIDMYSKCGDVD 570

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
            A  VF+ ++ K  ISW+++++G  M+G G +AL +F  M      PDD+TF+ ++ ACS
Sbjct: 571 TARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACS 630

Query: 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 383
           H G+VDQGL  F +MS  Y + P+ +HYAC +D+  R+G L++A   +++MP+E    VW
Sbjct: 631 HCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVW 690

Query: 384 GALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443
            ALL+ACR+H N E+ +     LV     + G++ L+SN +A A RW+D  +IR  +++ 
Sbjct: 691 VALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKS 750

Query: 444 GLKKKTGCSWIE 455
           G+KK+ GCSW++
Sbjct: 751 GIKKRPGCSWVQ 762



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 127/476 (26%), Positives = 220/476 (46%), Gaps = 81/476 (17%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML   +  +H+T    LKAC     ++     H  +   G   ++FI N+L+  Y     
Sbjct: 146 MLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 205

Query: 61  IFSAHQIFNSVV---FPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV----KPNAN---- 109
           +  A  IF+ +      DV+SW +I+S   K      A+D+F  + +    KP       
Sbjct: 206 LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 265

Query: 110 -TLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLAS------- 161
            ++V++L AC SL +    K +H +++RN    ++ + NA++D Y +CG + +       
Sbjct: 266 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNM 325

Query: 162 -------------CGY-----------LFVKMPKRN----VVSWTTMIGGYAERGFCKEA 193
                         GY           LF  M K N    VV+WT +I GY++RG   EA
Sbjct: 326 MEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEA 385

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN------- 246
           +++F++M  +    PN  T+++VLSAC+S+ A S G  +H+Y      L++ N       
Sbjct: 386 LNLFRQMIFSGSL-PNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDE 444

Query: 247 --LVGNAVINMYVKCGDVGIAIQVFNMLAYKDK--ISWSTVISGLAMNGCGRQALQLFSL 302
             +V NA+I+MY KC     A  +F+ +  +++  ++W+ +I G A  G    AL+LF  
Sbjct: 445 DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVE 504

Query: 303 MIIN--AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA-------- 352
           MI     V P+  T   ++ AC+H       L   +    ++  V +   Y         
Sbjct: 505 MISEPYGVAPNAYTISCILMACAH-------LAAIRIGKQIHAYVLRHHRYESSAYFVAN 557

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDE---MFDRIRQ 404
           C++DMY + G ++ A      M  ++  S W +++    +H R  E   +FD++R+
Sbjct: 558 CLIDMYSKCGDVDTARHVFDSMSQKSAIS-WTSMMTGYGMHGRGSEALDIFDKMRK 612



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 167/378 (44%), Gaps = 66/378 (17%)

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVS 123
           +   V     V W  +I    K G    AI++ C +     +P+  TL  VL AC  L S
Sbjct: 111 VLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPS 170

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKR---NVVSWTTM 180
           ++ G A H     N  E+N+ + NA++  Y RCGSL     +F ++ +R   +V+SW ++
Sbjct: 171 YRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSI 230

Query: 181 IGGYAERGFCKEAVSVFQEM-----EKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           +  + +      A+ +F +M     EK      +  ++VN+L AC S+ A+   K VH  
Sbjct: 231 VSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGN 290

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS---------------- 279
            + R        VGNA+I+ Y KCG +  A++VFNM+ +KD +S                
Sbjct: 291 -AIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEA 349

Query: 280 -------------------WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALIS 320
                              W+ VI+G +  GC  +AL LF  MI +   P+ VT I+++S
Sbjct: 350 AFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLS 409

Query: 321 ACSHGGLVDQG------------LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
           AC+  G   QG            L L        E    +  Y  ++DMY +    + A 
Sbjct: 410 ACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDE---DLMVYNALIDMYSKCRSFKAAR 466

Query: 369 AFIREMPIEAE----WSV 382
           +   ++P+E      W+V
Sbjct: 467 SIFDDIPLEERNVVTWTV 484



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 120/304 (39%), Gaps = 53/304 (17%)

Query: 101 GIDVKPNANTLVSVLSACSSLVS-HKLGKAIHAH------------SLRNLNENNII--- 144
           G+DV P+     S+L  C S  + H++ + I A             SL  L     I   
Sbjct: 32  GVDVYPS--HFASLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPR 89

Query: 145 -LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
            L   ++  Y+ CG+      +  ++     V W  +I  + ++G    A++V   M + 
Sbjct: 90  SLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRA 149

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
               P+  TL +VL AC  + +   G   H  I        +  + NA++ MY +CG + 
Sbjct: 150 G-TRPDHFTLPHVLKACGELPSYRCGSAFHGLICCN-GFESNVFICNALVAMYSRCGSLE 207

Query: 264 IAIQVFNMLAYK---DKISWSTVISGLAMNGCGRQALQLFSLMII------NAVFPDDVT 314
            A  +F+ +  +   D ISW++++S    +     AL LFS M +           D ++
Sbjct: 208 EASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIIS 267

Query: 315 FIALISACS-----------HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
            + ++ AC            HG  +  G              P +     ++D Y + GL
Sbjct: 268 IVNILPACGSLKAVPQTKEVHGNAIRNGTF------------PDVFVGNALIDAYAKCGL 315

Query: 364 LEEA 367
           +E A
Sbjct: 316 MENA 319



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 7/117 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHD---IFIQNSLLHFYVTVKDIFSAH 65
           N YT +  L AC+     +   +IHA+V+ + H ++    F+ N L+  Y    D+ +A 
Sbjct: 515 NAYTISCILMACAHLAAIRIGKQIHAYVLRH-HRYESSAYFVANCLIDMYSKCGDVDTAR 573

Query: 66  QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACS 119
            +F+S+     +SWT++++G    G   EA+D+F  +      P+  T + VL ACS
Sbjct: 574 HVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACS 630


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  318 bits (814), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 157/415 (37%), Positives = 258/415 (62%), Gaps = 6/415 (1%)

Query: 49  NSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VK 105
           N+LL  Y     +  A  +F+ +    VV+WT++I+  ++ G   EAI +F  +D   V 
Sbjct: 37  NTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVS 96

Query: 106 PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYL 165
           P+  T+ +VL AC+   S + GK +H +   N  ++NI + NA++D Y +CGS+     +
Sbjct: 97  PDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSV 156

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
           F++MP ++++SW TMIGGY++     EA+S+F +M    E +P+  TL  +L AC+S+++
Sbjct: 157 FLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDM--VLEMKPDGTTLACILPACASLAS 214

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285
           L  GK VH +I  R        V NA+++MYVKCG   +A  +F+M+  KD I+W+ +I+
Sbjct: 215 LDRGKEVHGHI-LRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIA 273

Query: 286 GLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 345
           G  M+G G  A+  F+ M    + PD+V+FI+++ ACSH GL+D+G   F  M     + 
Sbjct: 274 GYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVK 333

Query: 346 PQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQD 405
           P+++HYAC+VD+  R+G L  A  FI+ MPIE + ++WGALL+ CRIH + ++ +++ + 
Sbjct: 334 PKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEH 393

Query: 406 LVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +   +  + G + L++NT+A A++WE+  K+R +I R GLKK  GCSWIEV   +
Sbjct: 394 VFELEPENTGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVKSKV 448



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 143/279 (51%), Gaps = 4/279 (1%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +T T  L AC+     +   ++H ++ E     +IF+ N+L+  Y     +  A+ +F  
Sbjct: 100 FTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLE 159

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCG--IDVKPNANTLVSVLSACSSLVSHKLGK 128
           +   D++SW T+I G SK     EA+ +F    +++KP+  TL  +L AC+SL S   GK
Sbjct: 160 MPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLEMKPDGTTLACILPACASLASLDRGK 219

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H H LRN   ++  + NA++D Y++CG       LF  +P +++++WT MI GY   G
Sbjct: 220 EVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHG 279

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
           F   A++ F EM +    EP+E + +++L ACS    L  G    + +    ++      
Sbjct: 280 FGNNAITTFNEMRQAG-IEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEH 338

Query: 249 GNAVINMYVKCGDVGIAIQ-VFNMLAYKDKISWSTVISG 286
              ++++  + G + +A + + +M    D   W  ++SG
Sbjct: 339 YACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSG 377



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 100/339 (29%), Positives = 166/339 (48%), Gaps = 20/339 (5%)

Query: 111 LVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP 170
           +VS+L AC++     LG+A+H   ++          N +LD Y +CG L     +F  M 
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 171 KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGK 230
            R VV+WT++I  YA  G   EA+ +F EM++ +   P+  T+  VL AC+   +L  GK
Sbjct: 61  VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDR-EGVSPDIFTITTVLHACACNGSLENGK 119

Query: 231 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMN 290
            VH+YI    D+  +  V NA+++MY KCG +  A  VF  +  KD ISW+T+I G + N
Sbjct: 120 DVHNYIREN-DMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKN 178

Query: 291 GCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL-----ILFKAMSTVYEIV 345
               +AL LF  M++  + PD  T   ++ AC+    +D+G      IL     +  ++ 
Sbjct: 179 SLPNEALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVA 237

Query: 346 PQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH--RNDEM--FDR 401
             +      VDMY + G+   A      +P + +   W  ++    +H   N+ +  F+ 
Sbjct: 238 NAL------VDMYVKCGVPVLARLLFDMIPTK-DLITWTVMIAGYGMHGFGNNAITTFNE 290

Query: 402 IRQDLVNKKGVS-VGTFALMSNTFAGADRWEDTNKIRDE 439
           +RQ  +    VS +      S++    + W   N ++DE
Sbjct: 291 MRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDE 329


>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
 gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
          Length = 638

 Score =  318 bits (814), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 174/489 (35%), Positives = 279/489 (57%), Gaps = 42/489 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +T    +KAC++A   + AL +H   +  G +  +F+ N+LLH Y +   +  + + F
Sbjct: 111 NEFTLPFVVKACTIAQAREHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFF 170

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHK 125
           + +V  +VVSW ++I G ++ G  +E   +F  +  +    +  TLVS+L ACS   + +
Sbjct: 171 DEMVDRNVVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLE 230

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSL-------------------------- 159
           +G+ +H   L + +  ++IL++A++D Y +CG L                          
Sbjct: 231 IGRLVHCRMLVSGSRVDLILESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQT 290

Query: 160 -------ASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEAT 212
                  A C   F  MP+RN+VSW  MI  Y +RG C EA+ ++ +M+    A P+E T
Sbjct: 291 KHGSVNAARC--WFDHMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLA-PDEIT 347

Query: 213 LVNVLSACSSISALSFGKYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 271
           LV VLSA   I  L+ GK VH YI    Y+  VS  + N++++MY KCG V  AI +F+ 
Sbjct: 348 LVAVLSASGRIGDLTVGKMVHLYIRDNIYNPDVS--LVNSLLDMYAKCGQVDTAISLFSE 405

Query: 272 LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
           +  ++ +SW+ +I GLAM+G     +  F  M+ ++  PD +TF+AL+SACSHGGL++ G
Sbjct: 406 MCNRNVVSWNVIIGGLAMHGRALDTITFFRSMVTDSFAPDGITFVALLSACSHGGLLETG 465

Query: 332 LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACR 391
              F++M  VY +  +++HYAC+VD+ GR G LE+A   I+EMP++ +  VWGALL ACR
Sbjct: 466 QHYFESMRHVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACR 525

Query: 392 IHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGC 451
           IH N ++  ++ + L+  +G+S G F L+SN      +WED  ++R  ++  G +K  G 
Sbjct: 526 IHGNVKIGRQVIKQLLELEGISGGLFVLISNLLYETHQWEDMKRLRKLMKEWGTRKDMGV 585

Query: 452 SWIEVNPSI 460
           S IE+N SI
Sbjct: 586 SSIEINNSI 594



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 193/415 (46%), Gaps = 57/415 (13%)

Query: 5   PSSYNHY--TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD-- 60
           P+   H+  +  + L+ C      Q+  ++HAH++ +G L      + LL  Y  +    
Sbjct: 4   PARAGHHLPSLQKLLRQCRSI---QRLNQLHAHLLVHGSLSAA--SDLLLASYCALAKAG 58

Query: 61  ---IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSV 114
              +  A ++F+ +  PD V + TII         +EA+ +  G+    + PN  TL  V
Sbjct: 59  HGVLCHARRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFV 118

Query: 115 LSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV 174
           + AC+   + +   A+H  +LR      + + NA+L  Y   GSL      F +M  RNV
Sbjct: 119 VKACTIAQAREHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNV 178

Query: 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
           VSW +MIGGYA+ G  +E  S+F EM +    E +E TLV++L ACS    L  G+ VH 
Sbjct: 179 VSWNSMIGGYAQAGDTREVCSLFGEMRRQGFLE-DEFTLVSLLIACSQEGNLEIGRLVHC 237

Query: 235 YI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWST--------- 282
            +    +R DL    ++ +A+++MY KCGD+ +A + F M+  K  +SW++         
Sbjct: 238 RMLVSGSRVDL----ILESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKHG 293

Query: 283 ----------------------VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALIS 320
                                 +IS     G   +AL L++ M    + PD++T +A++S
Sbjct: 294 SVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLS 353

Query: 321 ACSH-GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
           A    G L    ++       +Y   P +     ++DMY + G ++ A +   EM
Sbjct: 354 ASGRIGDLTVGKMVHLYIRDNIYN--PDVSLVNSLLDMYAKCGQVDTAISLFSEM 406


>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
 gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
 gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
 gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
          Length = 598

 Score =  317 bits (813), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 168/450 (37%), Positives = 260/450 (57%), Gaps = 3/450 (0%)

Query: 9   NHYTFTQALKACS-LAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           + YT   ALKAC+ L    ++  + HA   + G L  + +QN+L+ FY        A ++
Sbjct: 116 DGYTLPAALKACARLGGGLREGCQAHAVAEKAGFLGRVPVQNALVTFYGACGQCGDARKV 175

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLG 127
           F+ +   DVVSWT ++S  ++ G   EA+ +   +DV PN  TL SVL AC +L + + G
Sbjct: 176 FDEMAERDVVSWTALLSAFTRGGMFMEALGVLAEMDVTPNEVTLASVLVACGNLGTARAG 235

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           KA+H    R   E N+I+ NA+LD Y++C  L     +F  +  R++VSWT MI G  + 
Sbjct: 236 KAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQC 295

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
               EA+ VF  M+ +   +P++  L  VLSAC+S+ AL  G++VH YI  R  +     
Sbjct: 296 KRPSEALEVFNAMQISG-VKPDKVVLSTVLSACASLGALESGRWVHEYIE-RKGIEWDVH 353

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           VG +V++MYVKCG +  A+ +F  +  K+  SW+ +I+G A++G GR+AL  F  M+ + 
Sbjct: 354 VGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDRMVASG 413

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           + P++VTFI ++ AC H GLV +G  LF+ M+  Y++ P   HY C+VD+ GRAGL++EA
Sbjct: 414 LHPNEVTFITVLGACCHSGLVQEGRQLFELMTKSYKLSPWEDHYGCMVDLLGRAGLIQEA 473

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
              I+ MP+      W  LL+AC+ H   +   +I   +   +    G + L+SN +A +
Sbjct: 474 YDVIKAMPMRPGVFTWVTLLSACQAHGRMDFSQQILMHIHELESSGNGIYVLLSNMYAVS 533

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           DRW D  K R  +   G++K+ G S IEVN
Sbjct: 534 DRWADVGKARGFMNEKGMQKEPGSSVIEVN 563


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  317 bits (813), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 172/492 (34%), Positives = 277/492 (56%), Gaps = 54/492 (10%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           L AC       +  E+H + I  G   D+F+ N+L+  Y     + +A ++FN + F DV
Sbjct: 279 LPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDV 338

Query: 77  VSWTTIISGLSKCGFHKEAIDMF-------CGIDVK------------------------ 105
           VSW  +++G S+ G  + A ++F         +DV                         
Sbjct: 339 VSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQ 398

Query: 106 -------PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNL----------NENNIILDNA 148
                  PN  T++SVLSAC+SL +   G  IHA+SL+N            + ++++ NA
Sbjct: 399 MIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNA 458

Query: 149 ILDFYIRCGSLASCGYLFVKMP--KRNVVSWTTMIGGYAERGFCKEAVSVFQEM-EKTKE 205
           ++D Y +C S  +   +F  +P  +RNVV+WT MIGG+A+ G   +A+ +F EM  +   
Sbjct: 459 LIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYG 518

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYI--STRYDLSVSNLVGNAVINMYVKCGDVG 263
             PN  T+  +L AC+ ++A+  GK +H+Y+    RY+ S +  V N +I+MY KCGDV 
Sbjct: 519 VAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYE-SSAYFVANCLIDMYSKCGDVD 577

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
            A  VF+ ++ K  ISW+++++G  M+G G +AL +F  M      PDD+TF+ ++ ACS
Sbjct: 578 TARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACS 637

Query: 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 383
           H G+VDQGL  F +MS  Y + P+ +HYAC +D+  R+G L++A   +++MP+E    VW
Sbjct: 638 HCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVW 697

Query: 384 GALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443
            ALL+ACR+H N E+ +     LV     + G++ L+SN +A A RW+D  +IR  +++ 
Sbjct: 698 VALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKS 757

Query: 444 GLKKKTGCSWIE 455
           G+KK+ GCSW++
Sbjct: 758 GIKKRPGCSWVQ 769



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 127/476 (26%), Positives = 220/476 (46%), Gaps = 81/476 (17%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML   +  +H+T    LKAC     ++     H  +   G   ++FI N+L+  Y     
Sbjct: 153 MLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 212

Query: 61  IFSAHQIFNSVV---FPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV----KPNAN---- 109
           +  A  IF+ +      DV+SW +I+S   K      A+D+F  + +    KP       
Sbjct: 213 LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 272

Query: 110 -TLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLAS------- 161
            ++V++L AC SL +    K +H +++RN    ++ + NA++D Y +CG + +       
Sbjct: 273 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNM 332

Query: 162 -------------CGY-----------LFVKMPKRN----VVSWTTMIGGYAERGFCKEA 193
                         GY           LF  M K N    VV+WT +I GY++RG   EA
Sbjct: 333 MEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEA 392

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN------- 246
           +++F++M  +    PN  T+++VLSAC+S+ A S G  +H+Y      L++ N       
Sbjct: 393 LNLFRQMIFSGSL-PNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDE 451

Query: 247 --LVGNAVINMYVKCGDVGIAIQVFNMLAYKDK--ISWSTVISGLAMNGCGRQALQLFSL 302
             +V NA+I+MY KC     A  +F+ +  +++  ++W+ +I G A  G    AL+LF  
Sbjct: 452 DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVE 511

Query: 303 MIIN--AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA-------- 352
           MI     V P+  T   ++ AC+H       L   +    ++  V +   Y         
Sbjct: 512 MISEPYGVAPNAYTISCILMACAH-------LAAIRIGKQIHAYVLRHHRYESSAYFVAN 564

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDE---MFDRIRQ 404
           C++DMY + G ++ A      M  ++  S W +++    +H R  E   +FD++R+
Sbjct: 565 CLIDMYSKCGDVDTARHVFDSMSQKSAIS-WTSMMTGYGMHGRGSEALDIFDKMRK 619



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 167/378 (44%), Gaps = 66/378 (17%)

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVS 123
           +   V     V W  +I    K G    AI++ C +     +P+  TL  VL AC  L S
Sbjct: 118 VLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPS 177

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKR---NVVSWTTM 180
           ++ G A H     N  E+N+ + NA++  Y RCGSL     +F ++ +R   +V+SW ++
Sbjct: 178 YRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSI 237

Query: 181 IGGYAERGFCKEAVSVFQEM-----EKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           +  + +      A+ +F +M     EK      +  ++VN+L AC S+ A+   K VH  
Sbjct: 238 VSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGN 297

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS---------------- 279
            + R        VGNA+I+ Y KCG +  A++VFNM+ +KD +S                
Sbjct: 298 -AIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEA 356

Query: 280 -------------------WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALIS 320
                              W+ VI+G +  GC  +AL LF  MI +   P+ VT I+++S
Sbjct: 357 AFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLS 416

Query: 321 ACSHGGLVDQG------------LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
           AC+  G   QG            L L        E    +  Y  ++DMY +    + A 
Sbjct: 417 ACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDE---DLMVYNALIDMYSKCRSFKAAR 473

Query: 369 AFIREMPIEAE----WSV 382
           +   ++P+E      W+V
Sbjct: 474 SIFDDIPLEERNVVTWTV 491



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 120/304 (39%), Gaps = 53/304 (17%)

Query: 101 GIDVKPNANTLVSVLSACSSLVS-HKLGKAIHAH------------SLRNLNENNII--- 144
           G+DV P+     S+L  C S  + H++ + I A             SL  L     I   
Sbjct: 39  GVDVYPS--HFASLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPR 96

Query: 145 -LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
            L   ++  Y+ CG+      +  ++     V W  +I  + ++G    A++V   M + 
Sbjct: 97  SLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRA 156

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
               P+  TL +VL AC  + +   G   H  I        +  + NA++ MY +CG + 
Sbjct: 157 G-TRPDHFTLPHVLKACGELPSYRCGSAFHGLICCN-GFESNVFICNALVAMYSRCGSLE 214

Query: 264 IAIQVFNMLAYK---DKISWSTVISGLAMNGCGRQALQLFSLMII------NAVFPDDVT 314
            A  +F+ +  +   D ISW++++S    +     AL LFS M +           D ++
Sbjct: 215 EASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIIS 274

Query: 315 FIALISACS-----------HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
            + ++ AC            HG  +  G              P +     ++D Y + GL
Sbjct: 275 IVNILPACGSLKAVPQTKEVHGNAIRNGTF------------PDVFVGNALIDAYAKCGL 322

Query: 364 LEEA 367
           +E A
Sbjct: 323 MENA 326



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 7/117 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHD---IFIQNSLLHFYVTVKDIFSAH 65
           N YT +  L AC+     +   +IHA+V+ + H ++    F+ N L+  Y    D+ +A 
Sbjct: 522 NAYTISCILMACAHLAAIRIGKQIHAYVLRH-HRYESSAYFVANCLIDMYSKCGDVDTAR 580

Query: 66  QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACS 119
            +F+S+     +SWT++++G    G   EA+D+F  +      P+  T + VL ACS
Sbjct: 581 HVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACS 637


>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
          Length = 648

 Score =  317 bits (811), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 168/485 (34%), Positives = 272/485 (56%), Gaps = 38/485 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +H TF   +KAC+          +  HV + G   D+F+ N+ +HF+     +  A ++F
Sbjct: 120 DHLTFPFLIKACARLQYRSYGAAVLGHVQKLGFSADVFVVNAAMHFWSVRGPMAFARRLF 179

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNANTLVSVLSACSSLVS 123
           +     DVVSW T+I G  + G  +EA+++F      G  V+P+  T++  +S C+ +  
Sbjct: 180 DESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGD 239

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            +LGK +H           + L NA++D Y++CGSL     +F ++  R  VSWTTMI G
Sbjct: 240 LELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVG 299

Query: 184 YAERGFC-------------------------------KEAVSVFQEMEKTKEAEPNEAT 212
           +A  G                                 KEA+++F EM+K+K  +PNE T
Sbjct: 300 HARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSK-VDPNEIT 358

Query: 213 LVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 272
           +VN+LSACS + AL  G +VH YI  R+ L +S  +G ++++MY KCG++  AI VFN +
Sbjct: 359 MVNLLSACSQLGALEMGMWVHHYID-RHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEI 417

Query: 273 AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL 332
             ++ ++W+++I GLA +G   +A++ F  MI   + PD++TFI ++SAC H GLV+ G 
Sbjct: 418 PVQNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVEAGR 477

Query: 333 ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI 392
             F  M   Y +  +M+HY+C++D+ GRAG L+EAE  +  MP++ +  VWGAL  ACR+
Sbjct: 478 QFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNAMPMDPDAVVWGALFFACRM 537

Query: 393 HRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCS 452
           H N  + ++    LV       G + L++N +A A+  +  +K+R  +R +G++K  GCS
Sbjct: 538 HGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCS 597

Query: 453 WIEVN 457
            IE+N
Sbjct: 598 CIELN 602



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 101/399 (25%), Positives = 180/399 (45%), Gaps = 54/399 (13%)

Query: 30  LEIHAHVIEYG----HLHDIFIQNSLLHFY----VTVKDIFSAHQIFNSVVFP--DVVSW 79
           L++HAH +  G    H    FI   +  F      + + +  A  I  S+  P      +
Sbjct: 25  LKLHAHHLVSGLLSSHSTSPFIDRLVAAFAHSDPASPRPLLHALAILASLPSPPDSAFPY 84

Query: 80  TTIISGLSKCGFHKEAIDMFC---------GIDVKPNANTLVSVLSACSSLVSHKLGKAI 130
                 LS C  H+  +D  C             +P+  T   ++ AC+ L     G A+
Sbjct: 85  NAAFRALSLCP-HQHLVDRHCLPLYRALLHSGSARPDHLTFPFLIKACARLQYRSYGAAV 143

Query: 131 HAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFC 190
             H  +     ++ + NA + F+   G +A    LF + P R+VVSW T+IGGY   G  
Sbjct: 144 LGHVQKLGFSADVFVVNAAMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLP 203

Query: 191 KEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
           +EA+ +F  + E      P+E T++  +S C+ +  L  GK +H ++  +       L+ 
Sbjct: 204 REALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLM- 262

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVI------------------------- 284
           NAV++MYVKCG + +A  VF  ++ +  +SW+T+I                         
Sbjct: 263 NAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVF 322

Query: 285 ------SGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM 338
                 +G   N  G++A+ LF  M  + V P+++T + L+SACS  G ++ G+ +   +
Sbjct: 323 PWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYI 382

Query: 339 STVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIE 377
              +++   +     +VDMY + G +++A     E+P++
Sbjct: 383 DR-HKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQ 420


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 161/453 (35%), Positives = 265/453 (58%), Gaps = 6/453 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T T  + +C+     ++  EIH  ++  G   D F+ ++L+  Y     +  A ++F  +
Sbjct: 401 TLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQI 460

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
              +VVSW ++I+G S  G  K  I++F  +D   ++P   TL S+L ACS  V+ +LGK
Sbjct: 461 QRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGK 520

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IH + +RN  E +I ++++++D Y +CG++ S   +F  MPK NVVSW  MI GY + G
Sbjct: 521 FIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVG 580

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
              EA+ +F +M K    +P+  T  +VL ACS ++ L  GK +H++I     L ++ +V
Sbjct: 581 SYLEALVIFTDMRKAG-VKPDAITFTSVLPACSQLAVLEKGKEIHNFI-IESKLEINEVV 638

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
             A+++MY KCG V  A+ +FN L  +D +SW+++I+    +G   +AL+LF  M  +  
Sbjct: 639 MGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDA 698

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD VTF+A++SACSH GLVD+G   F  M   Y   P ++HY+C++D+ GR G L EA 
Sbjct: 699 KPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAY 758

Query: 369 AFIREMP-IEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
             ++  P I  +  +   L +AC +H+  ++ ++I + L+ K      T+ ++SN +A  
Sbjct: 759 EILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASV 818

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            +W++  K+R +I+ +GLKK  GCSWIEV   I
Sbjct: 819 KKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRI 851



 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 117/407 (28%), Positives = 219/407 (53%), Gaps = 19/407 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +T+   LKACS          +H HVI+ G   D+ + +S +  Y        A ++F
Sbjct: 297 DAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLF 356

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHK 125
           + +   DV SW  +IS   + G  ++A+++F  + V   KP++ TL +V+S+C+ L+  +
Sbjct: 357 DEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLE 416

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK IH   +R+    +  + +A++D Y +CG L     +F ++ ++NVVSW +MI GY+
Sbjct: 417 RGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYS 476

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
            +G  K  + +F+ M++ +   P   TL ++L ACS    L  GK++H YI  R  +   
Sbjct: 477 LKGDSKSCIELFRRMDE-EGIRPTLTTLSSILMACSRSVNLQLGKFIHGYI-IRNRVEAD 534

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V +++I++Y KCG++G A  VF  +   + +SW+ +ISG    G   +AL +F+ M  
Sbjct: 535 IFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRK 594

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGL----ILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
             V PD +TF +++ ACS   ++++G      + ++   + E+V        ++DMY + 
Sbjct: 595 AGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVV-----MGALLDMYAKC 649

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQ 404
           G ++EA     ++P E ++  W +++ A   H       ++F++++Q
Sbjct: 650 GAVDEALHIFNQLP-ERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQ 695



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 183/355 (51%), Gaps = 20/355 (5%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP-DVVSWTTIISGLSKCG 90
           IH  ++  G  ++I +  SL++ Y +     SA  +F ++  P D+  W  +++  +K  
Sbjct: 217 IHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACTKNF 276

Query: 91  FHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
              E +++F  +     +KP+A T  SVL ACS L     GK +H H +++    ++++ 
Sbjct: 277 IFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVM 336

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           ++ +  Y +C        LF +MP+R+V SW  +I  Y + G  ++A+ +F+EM K    
Sbjct: 337 SSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEM-KVSGF 395

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
           +P+  TL  V+S+C+ +  L  GK +H  +  R   ++   V +A+++MY KCG + +A 
Sbjct: 396 KPDSVTLTTVISSCARLLDLERGKEIHMEL-VRSGFALDGFVSSALVDMYGKCGCLEMAK 454

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH-- 324
           +VF  +  K+ +SW+++I+G ++ G  +  ++LF  M    + P   T  +++ ACS   
Sbjct: 455 EVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSV 514

Query: 325 ----GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP 375
               G  +   +I  +  + ++         + ++D+Y + G +  AE   + MP
Sbjct: 515 NLQLGKFIHGYIIRNRVEADIFV-------NSSLIDLYFKCGNIGSAENVFQNMP 562



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 131/278 (47%), Gaps = 26/278 (9%)

Query: 109 NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168
           N  ++ ++A S+L    LGK IH   +    +NNI L  ++++ Y  C    S   +F  
Sbjct: 197 NRCLARVTAGSAL-EELLGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQT 255

Query: 169 MPKR-NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 227
           +    ++  W  ++    +     E + VF  +      +P+  T  +VL ACS +  + 
Sbjct: 256 IENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVG 315

Query: 228 FGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGL 287
           +GK VH+++  +   ++  +V ++ + MY KC     AI++F+ +  +D  SW+ VIS  
Sbjct: 316 YGKMVHTHV-IKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCY 374

Query: 288 AMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS-----------HGGLVDQGLILFK 336
             +G   +AL+LF  M ++   PD VT   +IS+C+           H  LV  G  L  
Sbjct: 375 YQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDG 434

Query: 337 AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
            +S+             +VDMYG+ G LE A+    ++
Sbjct: 435 FVSS------------ALVDMYGKCGCLEMAKEVFEQI 460


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 161/453 (35%), Positives = 265/453 (58%), Gaps = 6/453 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T T  + +C+     ++  EIH  ++  G   D F+ ++L+  Y     +  A ++F  +
Sbjct: 209 TLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQI 268

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
              +VVSW ++I+G S  G  K  I++F  +D   ++P   TL S+L ACS  V+ +LGK
Sbjct: 269 QRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGK 328

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IH + +RN  E +I ++++++D Y +CG++ S   +F  MPK NVVSW  MI GY + G
Sbjct: 329 FIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVG 388

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
              EA+ +F +M K    +P+  T  +VL ACS ++ L  GK +H++I     L ++ +V
Sbjct: 389 SYLEALVIFTDMRKAG-VKPDAITFTSVLPACSQLAVLEKGKEIHNFI-IESKLEINEVV 446

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
             A+++MY KCG V  A+ +FN L  +D +SW+++I+    +G   +AL+LF  M  +  
Sbjct: 447 MGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDA 506

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD VTF+A++SACSH GLVD+G   F  M   Y   P ++HY+C++D+ GR G L EA 
Sbjct: 507 KPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAY 566

Query: 369 AFIREMP-IEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
             ++  P I  +  +   L +AC +H+  ++ ++I + L+ K      T+ ++SN +A  
Sbjct: 567 EILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASV 626

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            +W++  K+R +I+ +GLKK  GCSWIEV   I
Sbjct: 627 KKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRI 659



 Score =  191 bits (484), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 117/407 (28%), Positives = 219/407 (53%), Gaps = 19/407 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +T+   LKACS          +H HVI+ G   D+ + +S +  Y        A ++F
Sbjct: 105 DAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLF 164

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHK 125
           + +   DV SW  +IS   + G  ++A+++F  + V   KP++ TL +V+S+C+ L+  +
Sbjct: 165 DEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLE 224

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK IH   +R+    +  + +A++D Y +CG L     +F ++ ++NVVSW +MI GY+
Sbjct: 225 RGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYS 284

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
            +G  K  + +F+ M++ +   P   TL ++L ACS    L  GK++H YI  R  +   
Sbjct: 285 LKGDSKSCIELFRRMDE-EGIRPTLTTLSSILMACSRSVNLQLGKFIHGYI-IRNRVEAD 342

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V +++I++Y KCG++G A  VF  +   + +SW+ +ISG    G   +AL +F+ M  
Sbjct: 343 IFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRK 402

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGL----ILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
             V PD +TF +++ ACS   ++++G      + ++   + E+V        ++DMY + 
Sbjct: 403 AGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVV-----MGALLDMYAKC 457

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQ 404
           G ++EA     ++P E ++  W +++ A   H       ++F++++Q
Sbjct: 458 GAVDEALHIFNQLP-ERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQ 503



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 189/370 (51%), Gaps = 20/370 (5%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP-D 75
           LK C  +   ++   IH  ++  G  ++I +  SL++ Y +     SA  +F ++  P D
Sbjct: 10  LKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLD 69

Query: 76  VVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIH 131
           +  W  +++  +K     E +++F  +     +KP+A T  SVL ACS L     GK +H
Sbjct: 70  ITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVH 129

Query: 132 AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
            H +++    ++++ ++ +  Y +C        LF +MP+R+V SW  +I  Y + G  +
Sbjct: 130 THVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPE 189

Query: 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNA 251
           +A+ +F+EM K    +P+  TL  V+S+C+ +  L  GK +H  +  R   ++   V +A
Sbjct: 190 KALELFEEM-KVSGFKPDSVTLTTVISSCARLLDLERGKEIHMEL-VRSGFALDGFVSSA 247

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD 311
           +++MY KCG + +A +VF  +  K+ +SW+++I+G ++ G  +  ++LF  M    + P 
Sbjct: 248 LVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPT 307

Query: 312 DVTFIALISACSH------GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             T  +++ ACS       G  +   +I  +  + ++         + ++D+Y + G + 
Sbjct: 308 LTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFV-------NSSLIDLYFKCGNIG 360

Query: 366 EAEAFIREMP 375
            AE   + MP
Sbjct: 361 SAENVFQNMP 370



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 129/280 (46%), Gaps = 25/280 (8%)

Query: 107 NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLF 166
           +   L+S+L  C      K GK IH   +    +NNI L  ++++ Y  C    S   +F
Sbjct: 2   DTTKLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVF 61

Query: 167 VKMPKR-NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
             +    ++  W  ++    +     E + VF  +      +P+  T  +VL ACS +  
Sbjct: 62  QTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGR 121

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285
           + +GK VH+++  +   ++  +V ++ + MY KC     AI++F+ +  +D  SW+ VIS
Sbjct: 122 VGYGKMVHTHV-IKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVIS 180

Query: 286 GLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS-----------HGGLVDQGLIL 334
               +G   +AL+LF  M ++   PD VT   +IS+C+           H  LV  G  L
Sbjct: 181 CYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFAL 240

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
              +S+             +VDMYG+ G LE A+    ++
Sbjct: 241 DGFVSSA------------LVDMYGKCGCLEMAKEVFEQI 268


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 166/484 (34%), Positives = 287/484 (59%), Gaps = 36/484 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YTF   LK+C+ +   ++  +IH HV++ G   D+++  SL+  YV    +  AH++F
Sbjct: 133 NSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVF 192

Query: 69  N-------------------------------SVVFPDVVSWTTIISGLSKCGFHKEAID 97
           +                                +   DVVSW  +ISG ++ G +KEA++
Sbjct: 193 DKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALE 252

Query: 98  MFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
           +F  +   +V+P+ +T+V+V+SAC+   S +LG+ +H     +   +N+ + NA++D Y 
Sbjct: 253 LFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYS 312

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           +CG L +   LF ++P ++V+SW T+IGGY      KEA+ +FQEM ++ E  PN+ T++
Sbjct: 313 KCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET-PNDVTML 371

Query: 215 NVLSACSSISALSFGKYVHSYISTRYD-LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 273
           ++L AC+ + A+  G+++H YI  R   ++ ++ +  ++I+MY KCGD+  A QVFN + 
Sbjct: 372 SILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSIL 431

Query: 274 YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI 333
           +K   SW+ +I G AM+G    +  LFS M    + PDD+TF+ L+SACSH G++D G  
Sbjct: 432 HKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRH 491

Query: 334 LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           +F+ M+  Y++ P+++HY C++D+ G +GL +EAE  I  M +E +  +W +LL AC++H
Sbjct: 492 IFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMH 551

Query: 394 RNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSW 453
            N E+ +   ++L+  +  + G++ L+SN +A A RW +  K R  +   G+KK  GCS 
Sbjct: 552 GNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSS 611

Query: 454 IEVN 457
           IE++
Sbjct: 612 IEID 615



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 138/313 (44%), Gaps = 43/313 (13%)

Query: 112 VSVLSACSSLVSHKLGKAIHAHSLR-NLNENNIILDNAILDFYIRCGSLASCGY---LFV 167
           +S+L  C +L S ++   IHA  ++  L+  N  L + +++F I         Y   +F 
Sbjct: 37  LSLLHNCKTLQSLRI---IHAQMIKIGLHNTNYAL-SKLIEFCILSPHFEGLPYAISVFK 92

Query: 168 KMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 227
            + + N++ W TM  G+A       A+ ++  M  +    PN  T   VL +C+   A  
Sbjct: 93  TIQEPNLLIWNTMFRGHALSSDPVSALKLYVCM-ISLGLLPNSYTFPFVLKSCAKSKAFK 151

Query: 228 FGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM---------------- 271
            G+ +H ++  +    +   V  ++I+MYV+ G +  A +VF+                 
Sbjct: 152 EGQQIHGHV-LKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGY 210

Query: 272 ---------------LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFI 316
                          +  KD +SW+ +ISG A  G  ++AL+LF  M+   V PD+ T +
Sbjct: 211 ASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMV 270

Query: 317 ALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPI 376
            ++SAC+  G ++ G  +   +   +     ++    ++D+Y + G LE A      +P 
Sbjct: 271 TVVSACAQSGSIELGRQVHLWIDD-HGFGSNLKIVNALIDLYSKCGELETACGLFERLPY 329

Query: 377 EAEWSVWGALLNA 389
           +   S W  L+  
Sbjct: 330 KDVIS-WNTLIGG 341


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  315 bits (808), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 165/454 (36%), Positives = 271/454 (59%), Gaps = 5/454 (1%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S + +TF   LKAC+     +  +++H+ V++ G   D F++ SL++ Y     I +A +
Sbjct: 105 SPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFK 164

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVS 123
           +F+ +   +  SWT  ISG    G  +EAIDMF     + ++P++ +LV VLSAC     
Sbjct: 165 VFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGD 224

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            + G+ I  +   N    N+ +  A++DFY +CG++     +F  M ++N+VSW++MI G
Sbjct: 225 LRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQG 284

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           YA  G  KEA+ +F +M   +  +P+   +V VL +C+ + AL  G +  + I+    L 
Sbjct: 285 YASNGLPKEALDLFFKM-LNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLD 343

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
            ++++G A+I+MY KCG +  A +VF  +  KD++ W+  ISGLAM+G  + AL LF  M
Sbjct: 344 -NSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQM 402

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
             + + PD  TF+ L+ AC+H GLV++G   F +M  V+ + P+++HY C+VD+ GRAG 
Sbjct: 403 EKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGC 462

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           L+EA   I+ MP+EA   VWGALL  CR+HR+ ++ + + + L+  +    G + L+SN 
Sbjct: 463 LDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNI 522

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +A + +WE+  KIR  +   G+KK  G SWIEV+
Sbjct: 523 YAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVD 556



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 184/361 (50%), Gaps = 7/361 (1%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           IHA ++  G   D ++ N +L F     +   + +I +    P++  + T+I GL     
Sbjct: 29  IHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLNDC 88

Query: 92  HKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148
            +E+I+++  +    + P++ T   VL AC+ ++  +LG  +H+  ++   E +  +  +
Sbjct: 89  FQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVKIS 148

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
           +++ Y +CG + +   +F  +P +N  SWT  I GY   G C+EA+ +F+ + +     P
Sbjct: 149 LINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMG-LRP 207

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           +  +LV VLSAC     L  G+++  YI T   +  +  V  A+++ Y KCG++  A  V
Sbjct: 208 DSFSLVEVLSACKRTGDLRSGEWIDEYI-TENGMVRNVFVATALVDFYGKCGNMERARSV 266

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F+ +  K+ +SWS++I G A NG  ++AL LF  M+   + PD    + ++ +C+  G +
Sbjct: 267 FDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGAL 326

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
           + G      ++   E +        ++DMY + G ++ A    R M  + +  VW A ++
Sbjct: 327 ELGDWASNLING-NEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMR-KKDRVVWNAAIS 384

Query: 389 A 389
            
Sbjct: 385 G 385


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  315 bits (808), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 178/489 (36%), Positives = 273/489 (55%), Gaps = 44/489 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYG-HLHDIFIQNSLLHFYV----------- 56
           N +TF    K+C+ +    +A ++HAH ++   HLH   +  SL+H Y            
Sbjct: 126 NSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHP-HVHTSLIHMYSQVGELRHARLV 184

Query: 57  ----TVKDIFS----------------AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAI 96
               T++D  S                A ++F+ +   DVVSW  +I+G  + G  +EA+
Sbjct: 185 FDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEAL 244

Query: 97  DMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFY 153
             F  +   DV PN +T+VSVLSAC  L S +LGK I +         N+ L NA++D Y
Sbjct: 245 ACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMY 304

Query: 154 IRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATL 213
            +CG + +   LF  M  ++V+ W TMIGGY      +EA+ +F+ M + +   PN+ T 
Sbjct: 305 SKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLR-ENVTPNDVTF 363

Query: 214 VNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGN-----AVINMYVKCGDVGIAIQV 268
           + VL AC+S+ AL  GK+VH+YI    +L  +  V N     ++I MY KCG V +A QV
Sbjct: 364 LAVLPACASLGALDLGKWVHAYIDK--NLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQV 421

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F  +  +   SW+ +ISGLAMNG   +AL LF  MI     PDD+TF+ ++SAC+  G V
Sbjct: 422 FRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFV 481

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
           + G   F +M+  Y I P++QHY C++D+  R+G  +EA+  +  M +E + ++WG+LLN
Sbjct: 482 ELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLN 541

Query: 389 ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
           ACRIH   E  + + + L   +  + G + L+SN +AGA RW+D  KIR ++   G+KK 
Sbjct: 542 ACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKV 601

Query: 449 TGCSWIEVN 457
            GC+ IE++
Sbjct: 602 PGCTSIEID 610



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 117/437 (26%), Positives = 216/437 (49%), Gaps = 54/437 (12%)

Query: 24  HPHQKAL----------EIHAHVIEYGHLHDIFIQNSLLHF--YVTVKDIFSAHQIFNSV 71
           HPH   L          +IH+ +I+ G  + +F Q+ L+ F      +D+  A  +F+S+
Sbjct: 26  HPHLNLLAKCPDIPSLKQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSI 85

Query: 72  VF--PDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKL 126
               P++  W T+I   S       ++ +F  +    + PN++T  S+  +C+   +   
Sbjct: 86  HHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHE 145

Query: 127 GKAIHAHSLR---------------------NLNENNIILDN----------AILDFYIR 155
            K +HAH+L+                      L    ++ D           A++  Y+ 
Sbjct: 146 AKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVS 205

Query: 156 CGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVN 215
            G +     LF ++P ++VVSW  MI GY + G  +EA++ F  M++  +  PN++T+V+
Sbjct: 206 EGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEA-DVSPNQSTMVS 264

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           VLSAC  + +L  GK++ S++  R       LV NA+++MY KCG++G A ++F+ +  K
Sbjct: 265 VLSACGHLRSLELGKWIGSWVRDRGFGKNLQLV-NALVDMYSKCGEIGTARKLFDGMEDK 323

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILF 335
           D I W+T+I G        +AL LF +M+   V P+DVTF+A++ AC+  G +D G  + 
Sbjct: 324 DVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVH 383

Query: 336 KAMSTVYE---IVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI 392
             +    +    V  +  +  ++ MY + G +E AE   R M   +  S W A+++   +
Sbjct: 384 AYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLAS-WNAMISGLAM 442

Query: 393 HRNDEMFDRIRQDLVNK 409
           + + E    + ++++N+
Sbjct: 443 NGHAERALGLFEEMINE 459



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 149/297 (50%), Gaps = 17/297 (5%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALE----IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIF 62
           S N  T    L AC     H ++LE    I + V + G   ++ + N+L+  Y    +I 
Sbjct: 256 SPNQSTMVSVLSACG----HLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIG 311

Query: 63  SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 119
           +A ++F+ +   DV+ W T+I G      ++EA+ +F  +   +V PN  T ++VL AC+
Sbjct: 312 TARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACA 371

Query: 120 SLVSHKLGKAIHAHSLRNL----NENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVV 175
           SL +  LGK +HA+  +NL    N NN+ L  +I+  Y +CG +     +F  M  R++ 
Sbjct: 372 SLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLA 431

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           SW  MI G A  G  + A+ +F+EM   +  +P++ T V VLSAC+    +  G    S 
Sbjct: 432 SWNAMISGLAMNGHAERALGLFEEM-INEGFQPDDITFVGVLSACTQAGFVELGHRYFSS 490

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIA-IQVFNMLAYKDKISWSTVISGLAMNG 291
           ++  Y +S        +I++  + G    A + + NM    D   W ++++   ++G
Sbjct: 491 MNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHG 547


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 163/455 (35%), Positives = 265/455 (58%), Gaps = 5/455 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T+   L AC          EIH+ V++ G + DI +QN+L+  Y     I  A  +F
Sbjct: 445 NKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLF 504

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           N +V  D++SWT +I GL+K G   EA+ +F  +    +KPN  T  S+L+ACSS  +  
Sbjct: 505 NKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALD 564

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ IH   +      +  + N +++ Y  CGS+     +F +M +R++V++  MIGGYA
Sbjct: 565 WGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYA 624

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
                KEA+ +F  +++ +  +P++ T +N+L+AC++  +L + K +HS +     LS +
Sbjct: 625 AHNLGKEALKLFDRLQE-EGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDT 683

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
           +L GNA+++ Y KCG    A+ VF+ +  ++ ISW+ +I G A +G G+  LQLF  M +
Sbjct: 684 SL-GNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKM 742

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             + PD VTF++L+SACSH GL+++G   F +MS  + I P ++HY C+VD+ GRAG L+
Sbjct: 743 EGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLD 802

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           E EA I+ MP +A   +WGALL ACRIH N  + +R  +  +     +   +  +S+ +A
Sbjct: 803 EVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYA 862

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            A  W+   K+R  + + G+ K+ G SWIEV   +
Sbjct: 863 AAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKL 897



 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 123/405 (30%), Positives = 218/405 (53%), Gaps = 19/405 (4%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T  + L +C      +   EIH   ++   L D+ + N +L+ Y     I  A ++F+ +
Sbjct: 246 TTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKM 305

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
               VVSWT II G + CG  + A ++F  +    V PN  T ++VL+A S   + K GK
Sbjct: 306 ETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGK 365

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H+H L   +E+++ +  A++  Y +CGS   C  +F K+  R++++W TMIGG AE G
Sbjct: 366 TVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGG 425

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR---YDLSVS 245
             +EA  ++ +M++ +   PN+ T V +L+AC + +AL +G+ +HS +      +D+SV 
Sbjct: 426 NWEEASEIYHQMQR-EGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQ 484

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
               NA+I+MY +CG +  A  +FN +  KD ISW+ +I GLA +G G +AL +F  M  
Sbjct: 485 ----NALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQ 540

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA-CVVDMYGRAGLL 364
             + P+ VT+ ++++ACS    +D G  + +    +   +    H A  +V+MY   G +
Sbjct: 541 AGLKPNRVTYTSILNACSSPAALDWGRRIHQ--QVIEAGLATDAHVANTLVNMYSMCGSV 598

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQD 405
           ++A      M  + +   + A++     H       ++FDR++++
Sbjct: 599 KDARQVFDRM-TQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEE 642



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/392 (28%), Positives = 204/392 (52%), Gaps = 21/392 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N   + + LK C          E+H H+I++  + D +  N+L++ Y+    I  A Q++
Sbjct: 140 NSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVW 199

Query: 69  NSVVFPD--VVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVS 123
           N +   +  V SW  ++ G  + G+ +EA+ +   +    +     T + +LS+C S  +
Sbjct: 200 NKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSA 259

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            + G+ IH  +++     ++ + N IL+ Y +CGS+     +F KM  ++VVSWT +IGG
Sbjct: 260 LECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGG 319

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI---STRY 240
           YA+ G  + A  +FQ+M++ +   PN  T +NVL+A S  +AL +GK VHS+I       
Sbjct: 320 YADCGHSEIAFEIFQKMQQ-EGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHES 378

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
           DL+    VG A++ MY KCG      QVF  L  +D I+W+T+I GLA  G   +A +++
Sbjct: 379 DLA----VGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIY 434

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST---VYEIVPQMQHYACVVDM 357
             M    + P+ +T++ L++AC +   +  G  +   +     +++I  Q      ++ M
Sbjct: 435 HQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQ----NALISM 490

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           Y R G +++A     +M +  +   W A++  
Sbjct: 491 YARCGSIKDARLLFNKM-VRKDIISWTAMIGG 521


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  315 bits (806), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 151/432 (34%), Positives = 270/432 (62%), Gaps = 6/432 (1%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           +H + I+     ++ + N LL  Y    ++ SA Q+F ++    VVSWT++I+G ++ G 
Sbjct: 273 LHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGL 332

Query: 92  HKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148
              ++ +F  ++   + P+  T+ ++L AC+     + GK +H +   N  ++++ + NA
Sbjct: 333 SDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNA 392

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
           ++D Y +CGS+     +F +M  +++VSW TMIGGY++     EA+++F EM+    ++P
Sbjct: 393 LMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYN--SKP 450

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           N  T+  +L AC+S++AL  G+ +H +I  R   S+   V NA+++MY+KCG +G+A  +
Sbjct: 451 NSITMACILPACASLAALERGQEIHGHI-LRNGFSLDRHVANALVDMYLKCGALGLARLL 509

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F+M+  KD +SW+ +I+G  M+G G +A+  F+ M  + + PD+V+FI+++ ACSH GL+
Sbjct: 510 FDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLL 569

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
           D+G   F  M     I P+ +HYAC+VD+  RAG L +A  FI+ MPIE + ++WGALL 
Sbjct: 570 DEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLC 629

Query: 389 ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
            CRI+ + ++ +++ + +   +  + G + L++N +A A++WE+  K+R+ I R GL+K 
Sbjct: 630 GCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKN 689

Query: 449 TGCSWIEVNPSI 460
            GCSWIE+   +
Sbjct: 690 PGCSWIEIKGKV 701



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/350 (30%), Positives = 182/350 (52%), Gaps = 30/350 (8%)

Query: 58  VKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSV 114
           ++ + SA ++F+ +   DV+SW ++ISG    G  ++ +D+F     + +  +  T+VSV
Sbjct: 198 IRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSV 257

Query: 115 LSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV 174
           ++ CS+     LG+A+H ++++      + L+N +LD Y + G+L S   +F  M +R+V
Sbjct: 258 VAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSV 317

Query: 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
           VSWT+MI GYA  G    +V +F EMEK +   P+  T+  +L AC+    L  GK VH+
Sbjct: 318 VSWTSMIAGYAREGLSDMSVRLFHEMEK-EGISPDIFTITTILHACACTGLLENGKDVHN 376

Query: 235 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
           YI     +     V NA+++MY KCG +G A  VF+ +  KD +SW+T+I G + N    
Sbjct: 377 YIKEN-KMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPN 435

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYE 343
           +AL LF  M  N+  P+ +T   ++ AC+           HG ++  G  L + ++    
Sbjct: 436 EALNLFVEMQYNSK-PNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANA-- 492

Query: 344 IVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
                     +VDMY + G L  A      +P E +   W  ++    +H
Sbjct: 493 ----------LVDMYLKCGALGLARLLFDMIP-EKDLVSWTVMIAGYGMH 531



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 148/279 (53%), Gaps = 4/279 (1%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +T T  L AC+     +   ++H ++ E     D+F+ N+L+  Y     +  AH +F+ 
Sbjct: 353 FTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSE 412

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSVLSACSSLVSHKLGK 128
           +   D+VSW T+I G SK     EA+++F  +  + KPN+ T+  +L AC+SL + + G+
Sbjct: 413 MQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNSKPNSITMACILPACASLAALERGQ 472

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IH H LRN    +  + NA++D Y++CG+L     LF  +P++++VSWT MI GY   G
Sbjct: 473 EIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHG 532

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
           +  EA++ F EM +    EP+E + +++L ACS    L  G    + +     +   +  
Sbjct: 533 YGSEAIAAFNEM-RNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEH 591

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYK-DKISWSTVISG 286
              ++++  + G++  A +   M+  + D   W  ++ G
Sbjct: 592 YACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCG 630



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 143/329 (43%), Gaps = 64/329 (19%)

Query: 105 KPNA--NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC 162
           KP+    T  SVL  C+ L S + G+ IH+    N  E + +L + ++  Y+ CG L   
Sbjct: 96  KPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREG 155

Query: 163 GYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK-------------------- 202
             +F K+    V  W  ++ GYA+ G  +E++S+F+ M +                    
Sbjct: 156 RRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRD 215

Query: 203 -----------------TKEAEPNEATLV-----------NVLSACSSISALSFGKYVHS 234
                             K  +  E  L+           +V++ CS+   L  G+ +H 
Sbjct: 216 VISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHG 275

Query: 235 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
           Y + +        + N +++MY K G++  AIQVF  +  +  +SW+++I+G A  G   
Sbjct: 276 Y-AIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSD 334

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA-- 352
            +++LF  M    + PD  T   ++ AC+  GL++ G         V+  + + +  +  
Sbjct: 335 MSVRLFHEMEKEGISPDIFTITTILHACACTGLLENG-------KDVHNYIKENKMQSDL 387

Query: 353 ----CVVDMYGRAGLLEEAEAFIREMPIE 377
                ++DMY + G + +A +   EM ++
Sbjct: 388 FVSNALMDMYAKCGSMGDAHSVFSEMQVK 416



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 15/173 (8%)

Query: 6   SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAH 65
           S  N  T    L AC+     ++  EIH H++  G   D  + N+L+  Y+    +  A 
Sbjct: 448 SKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLAR 507

Query: 66  QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLV 122
            +F+ +   D+VSWT +I+G    G+  EAI  F  +    ++P+  + +S+L AC    
Sbjct: 508 LLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYAC---- 563

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNA------ILDFYIRCGSLASCGYLFVKM 169
           SH  G         N+  NN  ++        I+D   R G+L+   Y F+KM
Sbjct: 564 SHS-GLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSK-AYKFIKM 614


>gi|357164322|ref|XP_003580018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Brachypodium distachyon]
          Length = 593

 Score =  315 bits (806), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 163/459 (35%), Positives = 265/459 (57%), Gaps = 8/459 (1%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQ------KALEIHAHVIEYGHLHDIFIQNSLLHFYVTV 58
           P   + YT    LKAC+            +  ++HA   + G L  + ++N+L+  Y   
Sbjct: 102 PRRPDGYTLPATLKACARLGAGGDDGGLREGRQVHAVAEKGGFLGRLPVRNALVTLYGVC 161

Query: 59  KDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSAC 118
            +   A ++F+ +   DVVSWT ++S   + G   EA+ +   +DV PN  TL  VL AC
Sbjct: 162 GECGDARRVFDEMASRDVVSWTALVSAFVRGGRFAEALVLVGQMDVVPNEGTLACVLVAC 221

Query: 119 SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWT 178
             L + + GKA+H   LR  ++  +I+ NA+LD Y++C  L     +F ++  R+V+SWT
Sbjct: 222 GRLGAARAGKAVHGWYLRRESDLKLIVGNAVLDMYVKCEKLDLARRVFDRLLVRDVISWT 281

Query: 179 TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST 238
            MI G  +     +A+ VF EM+K++  +P++  L  VLSAC+S+ AL  G++VH YI  
Sbjct: 282 IMISGLVQCKLPSKALEVFNEMQKSR-VKPDKVVLSTVLSACTSLGALESGRWVHEYIE- 339

Query: 239 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQ 298
           R  +     VG ++++MY KCG +  ++ +F  +  K+  SW+ +I+G A++G GR+AL+
Sbjct: 340 RKGIEWDVHVGTSLVDMYAKCGCLETSLSIFRKMPLKNLSSWNALINGFALHGHGREALE 399

Query: 299 LFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMY 358
            F  M+ + + P++V+FI ++ AC H GLV +GL LF++M   Y++ P  +HY  VVD+ 
Sbjct: 400 HFDRMVASGLAPNEVSFIIVLGACCHSGLVQEGLQLFESMKNSYKLSPWEEHYGSVVDLL 459

Query: 359 GRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFA 418
           GRAGL+ EA +  + MP+      WGALL+AC+ HR  +   +I + +   +    G +A
Sbjct: 460 GRAGLIHEAYSVTKAMPMRPAVFTWGALLSACQAHRQVDFSQQILRHVHELESSESGVYA 519

Query: 419 LMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           L+SN +A   RW D  ++R  +   GL+K+ G S IEVN
Sbjct: 520 LLSNIYAVNHRWADVKRVRGLMSEKGLQKEPGSSVIEVN 558


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  314 bits (805), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 174/451 (38%), Positives = 263/451 (58%), Gaps = 10/451 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +TF   LK+C   +  ++  E+H  VI+ G   + F+  +L+  Y +   I +A+++F
Sbjct: 50  NCFTFPVILKSCVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVF 109

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
             ++  +V++WT +I+G   C     A  +F   D+ P  + +V   +  S  +  K   
Sbjct: 110 GEMIERNVIAWTAMINGYITCCDLVTARRLF---DLAPERD-IVLWNTMISGYIEAK--D 163

Query: 129 AIHAHSLRNLNENNIILD-NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
            I A  L +   N  ++  N +L+ Y   G + +C  LF +MP+RNV SW  +IGGY   
Sbjct: 164 VIRARELFDKMPNKDVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRN 223

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR-YDLSVSN 246
           G   E +S F+ M       PN+ATLVNVLSAC+ + AL  GK+VH Y  +  Y  +V  
Sbjct: 224 GCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNV-- 281

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            V NA+++MY KCG V  A+ VF  +  KD ISW+T+I GLA++G G  AL LFS M I 
Sbjct: 282 YVRNALMDMYAKCGVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIA 341

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
              PD +TFI ++ AC+H GLV+ G   FK+M+  Y IVP+++HY C+VD+ GRAGLL  
Sbjct: 342 GENPDGITFIGILCACTHMGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAH 401

Query: 367 AEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAG 426
           A  FIR+MPIEA+  +W ALL ACR+++N E+ +   + L+  +  +   + ++SN +  
Sbjct: 402 AVDFIRKMPIEADAVIWAALLGACRVYKNVELAELALEKLIEFEPKNPANYVMLSNIYGD 461

Query: 427 ADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
             RW+D  +++  +R  G KK  GCS IEVN
Sbjct: 462 FGRWKDVARLKVAMRDTGFKKLPGCSLIEVN 492



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 158/346 (45%), Gaps = 38/346 (10%)

Query: 63  SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACS 119
           +AH++F+ +  P+   W  +  G S+   HK+ I +F    G+DV PN  T   +L +C 
Sbjct: 3   NAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCV 62

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
            + + K G+ +H   +++    N  +   ++D Y   G++ +   +F +M +RNV++WT 
Sbjct: 63  KINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTA 122

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           MI GY     C + V+  +  +   E    +  L N +              +  YI  +
Sbjct: 123 MINGYIT---CCDLVTARRLFDLAPE---RDIVLWNTM--------------ISGYIEAK 162

Query: 240 YDLSVSNLVG----------NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAM 289
             +    L            N V+N Y   GDV    ++F  +  ++  SW+ +I G   
Sbjct: 163 DVIRARELFDKMPNKDVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTR 222

Query: 290 NGCGRQALQLFSLMIINA-VFPDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVPQ 347
           NGC  + L  F  M+++  V P+D T + ++SAC+  G +D G  +   A S  Y+    
Sbjct: 223 NGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVY 282

Query: 348 MQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           +++   ++DMY + G++E A    + M    +   W  ++    +H
Sbjct: 283 VRN--ALMDMYAKCGVVETALDVFKSMD-NKDLISWNTIIGGLAVH 325


>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
 gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
          Length = 650

 Score =  314 bits (805), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 171/494 (34%), Positives = 275/494 (55%), Gaps = 40/494 (8%)

Query: 2   LSCPSSY--NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK 59
           L C SS   +H TF   LKAC+          +  HV + G   D+F+ N+ +HF+    
Sbjct: 111 LLCSSSARPDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVHFWSVSG 170

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNANTLVSV 114
            +  A ++F+     DVVSW T+I G  + G  +EA+++F      G  V+P+  T++  
Sbjct: 171 SMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGA 230

Query: 115 LSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV 174
           +S C+ +   +LGK +H           + L NA++D Y++CGSL     +F ++  + V
Sbjct: 231 VSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTV 290

Query: 175 VSWTTMIGGYAERGFC-------------------------------KEAVSVFQEMEKT 203
           VSWTTMI G+A  G                                 KEA+++F EM+++
Sbjct: 291 VSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQES 350

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
           K  +PNE T+VN+LSACS + AL  G +VH YI  R+ L +S  +G ++++MY KCG++ 
Sbjct: 351 K-VDPNEITMVNLLSACSQLGALEMGMWVHHYID-RHQLYLSVALGTSLVDMYAKCGNIK 408

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
            AI +F  +  K+ ++W+ +I GLA +G   +A++ F  MI   + PD++TFI ++SAC 
Sbjct: 409 KAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACC 468

Query: 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 383
           H GLV +G   F  M   Y +  +M+HY+C++D+ GRAG L+EAE  +  MP++ +  VW
Sbjct: 469 HAGLVKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMDPDAVVW 528

Query: 384 GALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443
           GAL  ACR+H N  + ++    LV       G + L++N +A A+  +  +K+R  +R +
Sbjct: 529 GALFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHL 588

Query: 444 GLKKKTGCSWIEVN 457
           G++K  GCS IE+N
Sbjct: 589 GVEKVPGCSCIELN 602



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 168/362 (46%), Gaps = 58/362 (16%)

Query: 74  PDVVS-WTTIISGLSKCGFHKEAID---------MFCGIDVKPNANTLVSVLSACSSLVS 123
           PD  S +      LS C  H+  +D         + C    +P+  T   +L AC+ L  
Sbjct: 78  PDSASPYNAAFRALSLCP-HRHLVDRHCLPLYRALLCSSSARPDHLTFPFLLKACARLQY 136

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
              G A+  H  +     ++ + NA + F+   GS+     LF + P R+VVSW T+IGG
Sbjct: 137 RPYGAAVLGHVQKLGFSADVFVVNAGVHFWSVSGSMVLARRLFDESPARDVVSWNTLIGG 196

Query: 184 YAERGFCKEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
           Y   G  +EA+ +F  + E  K   P+E T++  +S C+ +  L  GK +H ++ ++   
Sbjct: 197 YVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVR 256

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVI------------------ 284
               L+ NAV++MYVKCG + +A  VF  +  K  +SW+T+I                  
Sbjct: 257 CTVRLM-NAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDE 315

Query: 285 -------------SGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
                        +G   N  G++A+ LF  M  + V P+++T + L+SACS  G ++ G
Sbjct: 316 MPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMG 375

Query: 332 LILFKAMSTVYEIVPQMQHYACV------VDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 385
           +        V+  + + Q Y  V      VDMY + G +++A    +E+P +     W A
Sbjct: 376 M-------WVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIP-DKNALTWTA 427

Query: 386 LL 387
           ++
Sbjct: 428 MI 429


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  314 bits (805), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 173/460 (37%), Positives = 276/460 (60%), Gaps = 15/460 (3%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML      +H T+   +KAC+ +      L +H HV++ G   D +I +SL+H Y   KD
Sbjct: 186 MLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKD 245

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSK---CGFHKEAIDMFCGIDVKPNANTLVSVLSA 117
           + +A Q+FN     DVVSW  +I G  K    G  +   D     DV  + NT+++  + 
Sbjct: 246 LGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVI-SWNTMINGYAI 304

Query: 118 CSSLVSHKLGKAIHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
                   +GK   A  L   + E N++  N++L  +++CG++     LF +MP R+VVS
Sbjct: 305 --------VGKIDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVS 356

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           W +M+  YA+ G   EA+++F +M +    +P EAT+V++LSAC+ + AL  G ++H+YI
Sbjct: 357 WNSMLACYAQCGKPNEALALFDQM-RAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYI 415

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
           +    + V+++VG A+++MY KCG + +A QVFN +  KD ++W+T+I+G+A++G  ++A
Sbjct: 416 NDNR-IEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEA 474

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
            QLF  M    V P+D+TF+A++SACSH G+VD+G  L   MS+ Y I P+++HY CV+D
Sbjct: 475 QQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVID 534

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGT 416
           +  RAG LEEA   I  MP+E   S  GALL  CRIH N E+ + + + L+N +    G 
Sbjct: 535 LLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGR 594

Query: 417 FALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           + L+SN +A A +W+D  K+R+ ++  G+ K  G S IE+
Sbjct: 595 YILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIEL 634


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  314 bits (804), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 166/456 (36%), Positives = 272/456 (59%), Gaps = 8/456 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  TF   L ACS     ++  +I  H+IE G+  D  ++ +LL  Y     +  AH++F
Sbjct: 412 NRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVF 471

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
             +   +VV+W  +I+   +   +  A+  F  +    +KPN++T  S+L+ C S  S +
Sbjct: 472 EKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLE 531

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LGK +H   ++   E+++ + NA++  ++ CG L S   LF  MPKR++VSW T+I G+ 
Sbjct: 532 LGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFV 591

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS-TRYDLSV 244
           + G  + A   F+ M+++   +P++ T   +L+AC+S  AL+ G+ +H+ I+   +D  V
Sbjct: 592 QHGKNQVAFDYFKMMQESG-IKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDV 650

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
             LVG  +I+MY KCG +  A QVF+ L  K+  SW+++I+G A +G G++AL+LF  M 
Sbjct: 651 --LVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQ 708

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
              V PD +TF+  +SAC+H GL+++GL  F++M   + I P+M+HY C+VD++GRAGLL
Sbjct: 709 QEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIEPRMEHYGCMVDLFGRAGLL 767

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
            EA  FI +M +E +  VWGALL AC++H N E+ ++  Q  +       G F ++SN +
Sbjct: 768 NEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIY 827

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           A A  W++  K+R  +   G+ KK G SWIEV+  +
Sbjct: 828 AAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKV 863



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 111/394 (28%), Positives = 213/394 (54%), Gaps = 14/394 (3%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T++  L+ C           I+ H+ + G   DIF+ N+L++ Y    +  SA QIF+ +
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDM 171

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              DV SW  ++ G  + G ++EA  +   +    VKP+  T VS+L+AC+   +   G+
Sbjct: 172 REKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGR 231

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            ++   L+   + ++ +  A+++ +I+CG +     +F  +P R++V+WT+MI G A  G
Sbjct: 232 ELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHG 291

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSVSNL 247
             K+A ++FQ ME+ +  +P++   V++L AC+   AL  GK VH+ +    +D  +   
Sbjct: 292 RFKQACNLFQRMEE-EGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEI--Y 348

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           VG A+++MY KCG +  A++VF+++  ++ +SW+ +I+G A +G   +A   F+ MI + 
Sbjct: 349 VGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESG 408

Query: 308 VFPDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
           + P+ VTF++++ ACS    + +G  I    +   Y    +++    ++ MY + G L++
Sbjct: 409 IEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR--TALLSMYAKCGSLKD 466

Query: 367 AEAFIREMPIEAEWSVWGALLNACRIHRNDEMFD 400
           A     ++  +     W A++ A   H   E +D
Sbjct: 467 AHRVFEKIS-KQNVVAWNAMITAYVQH---EQYD 496



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 170/306 (55%), Gaps = 15/306 (4%)

Query: 71  VVFPDVVSW---TTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSH 124
           VVF D+        +++ LSK G   EA+ +   +D   ++    T  ++L  C    + 
Sbjct: 67  VVFADIKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNL 126

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
             G+ I+ H  ++  + +I + N +++ Y +CG+  S   +F  M +++V SW  ++GGY
Sbjct: 127 GDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGY 186

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLS 243
            + G  +EA  + ++M +    +P++ T V++L+AC+    +  G+ +++ I    +D  
Sbjct: 187 VQHGLYEEAFKLHEQMVQ-DSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTD 245

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           +   VG A+INM++KCGD+G A +VF+ L  +D ++W+++I+GLA +G  +QA  LF  M
Sbjct: 246 L--FVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRM 303

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY--ACVVDMYGRA 361
               V PD V F++L+ AC+H   ++QG    K  + + E+    + Y    ++ MY + 
Sbjct: 304 EEEGVQPDKVAFVSLLRACNHPEALEQGK---KVHARMKEVGWDTEIYVGTAILSMYTKC 360

Query: 362 GLLEEA 367
           G +E+A
Sbjct: 361 GSMEDA 366


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  314 bits (804), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 166/456 (36%), Positives = 272/456 (59%), Gaps = 8/456 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  TF   L ACS     ++  +I  H+IE G+  D  ++ +LL  Y     +  AH++F
Sbjct: 412 NRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVF 471

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
             +   +VV+W  +I+   +   +  A+  F  +    +KPN++T  S+L+ C S  S +
Sbjct: 472 EKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLE 531

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LGK +H   ++   E+++ + NA++  ++ CG L S   LF  MPKR++VSW T+I G+ 
Sbjct: 532 LGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFV 591

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS-TRYDLSV 244
           + G  + A   F+ M+++   +P++ T   +L+AC+S  AL+ G+ +H+ I+   +D  V
Sbjct: 592 QHGKNQVAFDYFKMMQESG-IKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDV 650

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
             LVG  +I+MY KCG +  A QVF+ L  K+  SW+++I+G A +G G++AL+LF  M 
Sbjct: 651 --LVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQ 708

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
              V PD +TF+  +SAC+H GL+++GL  F++M   + I P+M+HY C+VD++GRAGLL
Sbjct: 709 QEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIEPRMEHYGCMVDLFGRAGLL 767

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
            EA  FI +M +E +  VWGALL AC++H N E+ ++  Q  +       G F ++SN +
Sbjct: 768 NEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIY 827

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           A A  W++  K+R  +   G+ KK G SWIEV+  +
Sbjct: 828 AAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKV 863



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/394 (28%), Positives = 214/394 (54%), Gaps = 14/394 (3%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T++  L+ C           I+ H+ + G   DIF++N+L++ Y    +  SA QIF+ +
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDM 171

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              DV SW  ++ G  + G ++EA  +   +    VKP+  T VS+L+AC+   +   G+
Sbjct: 172 REKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGR 231

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            ++   L+   + ++ +  A+++ +I+CG +     +F  +P R++V+WT+MI G A  G
Sbjct: 232 ELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHG 291

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSVSNL 247
             K+A ++FQ ME+ +  +P++   V++L AC+   AL  GK VH+ +    +D  +   
Sbjct: 292 RFKQACNLFQRMEE-EGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEI--Y 348

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           VG A+++MY KCG +  A++VF+++  ++ +SW+ +I+G A +G   +A   F+ MI + 
Sbjct: 349 VGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESG 408

Query: 308 VFPDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
           + P+ VTF++++ ACS    + +G  I    +   Y    +++    ++ MY + G L++
Sbjct: 409 IEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR--TALLSMYAKCGSLKD 466

Query: 367 AEAFIREMPIEAEWSVWGALLNACRIHRNDEMFD 400
           A     ++  +     W A++ A   H   E +D
Sbjct: 467 AHRVFEKIS-KQNVVAWNAMITAYVQH---EQYD 496



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 170/306 (55%), Gaps = 15/306 (4%)

Query: 71  VVFPDVVSW---TTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSH 124
           VVF D+        +++ LSK G   EA+ +   +D   ++    T  ++L  C    + 
Sbjct: 67  VVFADIKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNL 126

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
             G+ I+ H  ++  + +I + N +++ Y +CG+  S   +F  M +++V SW  ++GGY
Sbjct: 127 GDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGY 186

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLS 243
            + G  +EA  + ++M +    +P++ T V++L+AC+    +  G+ +++ I    +D  
Sbjct: 187 VQHGLYEEAFKLHEQMVQ-DSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTD 245

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           +   VG A+INM++KCGD+G A +VF+ L  +D ++W+++I+GLA +G  +QA  LF  M
Sbjct: 246 L--FVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRM 303

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY--ACVVDMYGRA 361
               V PD V F++L+ AC+H   ++QG    K  + + E+    + Y    ++ MY + 
Sbjct: 304 EEEGVQPDKVAFVSLLRACNHPEALEQGK---KVHARMKEVGWDTEIYVGTAILSMYTKC 360

Query: 362 GLLEEA 367
           G +E+A
Sbjct: 361 GSMEDA 366


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  313 bits (803), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 171/492 (34%), Positives = 274/492 (55%), Gaps = 54/492 (10%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           L AC       +  E+H + I  G   D+F+ N+L+  Y     + +A ++FN + F DV
Sbjct: 127 LPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDV 186

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGIDVK------------------------------- 105
           VSW  +++G S+ G  K A ++F  +  +                               
Sbjct: 187 VSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQ 246

Query: 106 -------PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNL----------NENNIILDNA 148
                  PN  T++SVLSAC+SL +   G  IHA+SL+N            + ++++ NA
Sbjct: 247 MIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNA 306

Query: 149 ILDFYIRCGSLASCGYLFVKMP--KRNVVSWTTMIGGYAERGFCKEAVSVFQEM-EKTKE 205
           ++D Y +C S  +   +F  +P  +RNVV+WT MIGG+A+ G   +A+ +F EM  +   
Sbjct: 307 LIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYG 366

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYI--STRYDLSVSNLVGNAVINMYVKCGDVG 263
             PN  T+  +L AC+ ++A+  GK +H+Y+    +YD S +  V N +INMY KCGDV 
Sbjct: 367 VAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYD-SSAYFVANCLINMYSKCGDVD 425

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
            A  VF+ ++ K  ISW+++++G  M+G G +AL +F  M      PDD+TF+ ++ ACS
Sbjct: 426 TARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACS 485

Query: 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 383
           H G+VDQGL  F +MS  Y + P+ +HYA  +D+  R G L++A   +++MP+E    VW
Sbjct: 486 HCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVW 545

Query: 384 GALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443
            ALL+ACR+H N E+ +     LV     + G++ L+SN +A A RW+D  +IR  +++ 
Sbjct: 546 VALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKS 605

Query: 444 GLKKKTGCSWIE 455
           G+KK+ GCSW++
Sbjct: 606 GIKKRPGCSWVQ 617



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 123/475 (25%), Positives = 216/475 (45%), Gaps = 79/475 (16%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML   +  +H+T    LKAC     ++     H  +   G   ++FI N+L+  Y     
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 61  IFSAHQIFNSVV---FPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV----KPNAN---- 109
           +  A  IF+ +      DV+SW +I+S   K      A+D+F  + +    KP       
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 110 -TLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168
            ++V++L AC SL +    K +H +++RN    ++ + NA++D Y +CG + +   +F  
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNM 180

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK----------------------TKEA 206
           M  ++VVSW  M+ GY++ G  K A  +F+ M K                      + EA
Sbjct: 181 MEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEA 240

Query: 207 ------------EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN-------- 246
                        PN  T+++VLSAC+S+ A S G  +H+Y      L++ N        
Sbjct: 241 LNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDED 300

Query: 247 -LVGNAVINMYVKCGDVGIAIQVFNMLAYKDK--ISWSTVISGLAMNGCGRQALQLFSLM 303
            +V NA+I+MY KC     A  +F+ +  +++  ++W+ +I G A  G    AL+LF  M
Sbjct: 301 LMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEM 360

Query: 304 IIN--AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA--------C 353
           I     V P+  T   ++ AC+H       L   +    ++  V +   Y         C
Sbjct: 361 ISEPYGVAPNAYTISCILMACAH-------LAAIRIGKQIHAYVLRHHQYDSSAYFVANC 413

Query: 354 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDE---MFDRIRQ 404
           +++MY + G ++ A      M  ++  S W +++    +H R  E   +FD++R+
Sbjct: 414 LINMYSKCGDVDTARHVFDSMSQKSAIS-WTSMMTGYGMHGRGSEALDIFDKMRK 467



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 7/117 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHD---IFIQNSLLHFYVTVKDIFSAH 65
           N YT +  L AC+     +   +IHA+V+ + H +D    F+ N L++ Y    D+ +A 
Sbjct: 370 NAYTISCILMACAHLAAIRIGKQIHAYVLRH-HQYDSSAYFVANCLINMYSKCGDVDTAR 428

Query: 66  QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACS 119
            +F+S+     +SWT++++G    G   EA+D+F  +      P+  T + VL ACS
Sbjct: 429 HVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACS 485


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  313 bits (803), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 171/492 (34%), Positives = 274/492 (55%), Gaps = 54/492 (10%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           L AC       +  E+H + I  G   D+F+ N+L+  Y     + +A ++FN + F DV
Sbjct: 234 LPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDV 293

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGIDVK------------------------------- 105
           VSW  +++G S+ G  K A ++F  +  +                               
Sbjct: 294 VSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQ 353

Query: 106 -------PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNL----------NENNIILDNA 148
                  PN  T++SVLSAC+SL +   G  IHA+SL+N            + ++++ NA
Sbjct: 354 MIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNA 413

Query: 149 ILDFYIRCGSLASCGYLFVKMP--KRNVVSWTTMIGGYAERGFCKEAVSVFQEM-EKTKE 205
           ++D Y +C S  +   +F  +P  +RNVV+WT MIGG+A+ G   +A+ +F EM  +   
Sbjct: 414 LIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYG 473

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYI--STRYDLSVSNLVGNAVINMYVKCGDVG 263
             PN  T+  +L AC+ ++A+  GK +H+Y+    +YD S +  V N +INMY KCGDV 
Sbjct: 474 VAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYD-SSAYFVANCLINMYSKCGDVD 532

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
            A  VF+ ++ K  ISW+++++G  M+G G +AL +F  M      PDD+TF+ ++ ACS
Sbjct: 533 TARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACS 592

Query: 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 383
           H G+VDQGL  F +MS  Y + P+ +HYA  +D+  R G L++A   +++MP+E    VW
Sbjct: 593 HCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVW 652

Query: 384 GALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443
            ALL+ACR+H N E+ +     LV     + G++ L+SN +A A RW+D  +IR  +++ 
Sbjct: 653 VALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKS 712

Query: 444 GLKKKTGCSWIE 455
           G+KK+ GCSW++
Sbjct: 713 GIKKRPGCSWVQ 724



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 123/475 (25%), Positives = 216/475 (45%), Gaps = 79/475 (16%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML   +  +H+T    LKAC     ++     H  +   G   ++FI N+L+  Y     
Sbjct: 108 MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 167

Query: 61  IFSAHQIFNSVV---FPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV----KPNAN---- 109
           +  A  IF+ +      DV+SW +I+S   K      A+D+F  + +    KP       
Sbjct: 168 LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 227

Query: 110 -TLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168
            ++V++L AC SL +    K +H +++RN    ++ + NA++D Y +CG + +   +F  
Sbjct: 228 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNM 287

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK----------------------TKEA 206
           M  ++VVSW  M+ GY++ G  K A  +F+ M K                      + EA
Sbjct: 288 MEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEA 347

Query: 207 ------------EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN-------- 246
                        PN  T+++VLSAC+S+ A S G  +H+Y      L++ N        
Sbjct: 348 LNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDED 407

Query: 247 -LVGNAVINMYVKCGDVGIAIQVFNMLAYKDK--ISWSTVISGLAMNGCGRQALQLFSLM 303
            +V NA+I+MY KC     A  +F+ +  +++  ++W+ +I G A  G    AL+LF  M
Sbjct: 408 LMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEM 467

Query: 304 IIN--AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA--------C 353
           I     V P+  T   ++ AC+H       L   +    ++  V +   Y         C
Sbjct: 468 ISEPYGVAPNAYTISCILMACAH-------LAAIRIGKQIHAYVLRHHQYDSSAYFVANC 520

Query: 354 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDE---MFDRIRQ 404
           +++MY + G ++ A      M  ++  S W +++    +H R  E   +FD++R+
Sbjct: 521 LINMYSKCGDVDTARHVFDSMSQKSAIS-WTSMMTGYGMHGRGSEALDIFDKMRK 574



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 7/117 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHD---IFIQNSLLHFYVTVKDIFSAH 65
           N YT +  L AC+     +   +IHA+V+ + H +D    F+ N L++ Y    D+ +A 
Sbjct: 477 NAYTISCILMACAHLAAIRIGKQIHAYVLRH-HQYDSSAYFVANCLINMYSKCGDVDTAR 535

Query: 66  QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACS 119
            +F+S+     +SWT++++G    G   EA+D+F  +      P+  T + VL ACS
Sbjct: 536 HVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACS 592



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 97/243 (39%), Gaps = 34/243 (13%)

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           L   ++  Y+ CG+      +  ++     V W  +I  + ++G    A++V   M +  
Sbjct: 53  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 112

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
               +  TL +VL AC  + +   G   H  I        +  + NA++ MY +CG +  
Sbjct: 113 -TRLDHFTLPHVLKACGELPSYRCGSAFHGLICCN-GFESNVFICNALVAMYSRCGSLEE 170

Query: 265 AIQVFNMLAYK---DKISWSTVISGLAMNGCGRQALQLFSLMII------NAVFPDDVTF 315
           A  +F+ +  +   D ISW++++S    +     AL LFS M +           D ++ 
Sbjct: 171 ASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISI 230

Query: 316 IALISACS-----------HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
           + ++ AC            HG  +  G  L   +               ++D Y + GL+
Sbjct: 231 VNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNA------------LIDAYAKCGLM 278

Query: 365 EEA 367
           E A
Sbjct: 279 ENA 281


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 163/453 (35%), Positives = 265/453 (58%), Gaps = 6/453 (1%)

Query: 9   NHYTFTQALKACS-LAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           +++TF   LKAC+ L H     L +H+ VI+ G   D+F++  L+  Y     +  A ++
Sbjct: 100 DNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKV 159

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSH 124
           F+ +   +VVSWT II G  + G   EA+ +F G+    ++P++ TLV +L ACS +   
Sbjct: 160 FDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDL 219

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
             G+ I  +   + +  N+ +  +++D Y +CGS+     +F  M +++VV W+ +I GY
Sbjct: 220 ASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGY 279

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           A  G  KEA+ VF EM++ +   P+   +V V SACS + AL  G +    +     LS 
Sbjct: 280 ASNGMPKEALDVFFEMQR-ENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLS- 337

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           + ++G A+I+ Y KCG V  A +VF  +  KD + ++ VISGLAM G    A  +F  M+
Sbjct: 338 NPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMV 397

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
              + PD  TF+ L+  C+H GLVD G   F  MS+V+ + P ++HY C+VD+  RAGLL
Sbjct: 398 KVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLL 457

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
            EA+  IR MP+EA   VWGALL  CR+H++ ++ + + + L+  +  + G + L+SN +
Sbjct: 458 VEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSNIY 517

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           + + RW++  KIR  + + G++K  GCSW+EV+
Sbjct: 518 SASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVD 550



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 132/302 (43%), Gaps = 12/302 (3%)

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           K  H   LR     +  L N +L   +   +      +F + P  N+  + T+I G    
Sbjct: 20  KQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIRGMVSN 79

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS-ALSFGKYVHSY-ISTRYDLSVS 245
              ++AVSV+  M +   A P+  T   VL AC+ +      G  +HS  I T +D  V 
Sbjct: 80  DAFRDAVSVYASMRQHGFA-PDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDV- 137

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V   ++ +Y K G +  A +VF+ +  K+ +SW+ +I G   +GC  +AL LF  ++ 
Sbjct: 138 -FVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLE 196

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             + PD  T + ++ ACS  G +  G  +   M      V  +     +VDMY + G +E
Sbjct: 197 MGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGS-VGNVFVATSLVDMYAKCGSME 255

Query: 366 EAEAFIREMPIEAEWSVWGALL-----NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           EA      M +E +   W AL+     N       D  F+  R+++       VG F+  
Sbjct: 256 EARRVFDGM-VEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSAC 314

Query: 421 SN 422
           S 
Sbjct: 315 SR 316


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 162/456 (35%), Positives = 276/456 (60%), Gaps = 15/456 (3%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L A +  +  ++  E+H +++      D+F+ ++L+  Y   +D+  A  ++++ 
Sbjct: 345 TLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAA 404

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMF------CGIDVKPNANTLVSVLSACSSLVSHK 125
              DVV  +T+ISG    G  +EA+ MF      C   +KPNA T+ SVL  C+S+ +  
Sbjct: 405 RAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQC---IKPNAVTIASVLPGCASMAALP 461

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG+ IH + LRN  E    +++A++D Y +CG L    Y+F+KM +++ V+W +MI  ++
Sbjct: 462 LGQQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFS 521

Query: 186 ERGFCKEAVSVFQEM--EKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           + G  +EA+ +F++M  E  K    N  T+   LSAC+S+ A+ +GK +H  ++ +  + 
Sbjct: 522 QNGKPQEALDLFRQMCMEGIKY---NNITISAALSACASLPAIYYGKEIHG-VTIKGPIK 577

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
                 +A+I+MY KCG++ +A++VF  +  K+++SW+++IS    +G  ++++ L   M
Sbjct: 578 ADIFAESALIDMYAKCGNLELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGM 637

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
                 PD VTF+ALISAC+H GLV++G+ LF+ M+  Y I P+M+H+AC+VD+Y R+G 
Sbjct: 638 QEEGYKPDHVTFLALISACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYSRSGK 697

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           L++A  FI +MP + +  +WGALL+ACR+HRN E+ D   Q+L      + G + LMSN 
Sbjct: 698 LDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELADIASQELFKLDPANSGYYVLMSNI 757

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPS 459
            A A RW+  +K+R  ++   + K  G SW++VN S
Sbjct: 758 NAVAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNNS 793



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 202/388 (52%), Gaps = 7/388 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L  C+         ++H+  ++ G   ++ + N+LL  Y   + +  A ++F
Sbjct: 241 NFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLF 300

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   D+V+W  +ISG  + G   EA  +F  +     +P++ TLVS+L A + L   K
Sbjct: 301 ELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLK 360

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK +H + +RN    ++ L +A++D Y +C  +     L+      +VV  +TMI GY 
Sbjct: 361 QGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYV 420

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G  +EA+ +F+ + + +  +PN  T+ +VL  C+S++AL  G+ +H Y+  R      
Sbjct: 421 LNGMSEEALQMFRYLLE-QCIKPNAVTIASVLPGCASMAALPLGQQIHGYV-LRNAYERK 478

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V +A+++MY KCG + ++  +F  ++ KD+++W+++IS  + NG  ++AL LF  M +
Sbjct: 479 CYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCM 538

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             +  +++T  A +SAC+    +  G  +   ++    I   +   + ++DMY + G LE
Sbjct: 539 EGIKYNNITISAALSACASLPAIYYGKEI-HGVTIKGPIKADIFAESALIDMYAKCGNLE 597

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIH 393
            A      MP + E S W ++++A   H
Sbjct: 598 LALRVFEFMPDKNEVS-WNSIISAYGAH 624



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 199/407 (48%), Gaps = 11/407 (2%)

Query: 3   SCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIF 62
           + PS   H T    +K+C+          +H      G  +D+++ ++L+  Y     + 
Sbjct: 135 AAPSPDAH-TLPYVVKSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLG 193

Query: 63  SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACS 119
           +A   F+ +   D V W  ++ G  K G    A+ +F  +     +PN  TL   LS C+
Sbjct: 194 NARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCA 253

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
           +      G  +H+ +++   E  + + N +L  Y +C  L     LF  MP+ ++V+W  
Sbjct: 254 TDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNG 313

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           MI G  + G   EA  +F +M+++  A P+  TLV++L A + ++ L  GK VH YI  R
Sbjct: 314 MISGCVQNGLFVEAFGLFYDMQRSG-ARPDSITLVSLLPALTDLNGLKQGKEVHGYI-VR 371

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
             +++   + +A++++Y KC DV +A  +++     D +  ST+ISG  +NG   +ALQ+
Sbjct: 372 NCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQM 431

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVPQMQHYACVVDMY 358
           F  ++   + P+ VT  +++  C+    +  G  I    +   YE    ++  + ++DMY
Sbjct: 432 FRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVE--SALMDMY 489

Query: 359 GRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDRIRQ 404
            + G L+ +     +M  + E + W +++++  +  +  E  D  RQ
Sbjct: 490 AKCGRLDLSHYIFLKMSQKDEVT-WNSMISSFSQNGKPQEALDLFRQ 535



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 159/327 (48%), Gaps = 15/327 (4%)

Query: 17  LKACSLAHPHQK-ALEIHAHVIEYGHLHD---IFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           L+ C ++ PH    L+IHA  +  G L D   + +   LL  YV  +    A  +F+++ 
Sbjct: 39  LRGC-VSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFSALP 97

Query: 73  FPDVVS---WTTIISGLSKCGFHKEAIDMFCGI-----DVKPNANTLVSVLSACSSLVSH 124
                S   W  +I G +  G H  A+  +  +        P+A+TL  V+ +C++L + 
Sbjct: 98  RAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAM 157

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
            LG+ +H  +      N++ + +A++  Y   G L +    F  +P+R+ V W  M+ G 
Sbjct: 158 SLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGC 217

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
            + G    AV +F+ M +    EPN ATL   LS C++ + L  G  +HS ++ +  L  
Sbjct: 218 IKAGDVDGAVRLFRNM-RASGCEPNFATLACFLSVCATDADLLSGAQLHS-LAVKCGLEP 275

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
              V N ++ MY KC  +  A ++F ++   D ++W+ +ISG   NG   +A  LF  M 
Sbjct: 276 EVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQ 335

Query: 305 INAVFPDDVTFIALISACSHGGLVDQG 331
            +   PD +T ++L+ A +    + QG
Sbjct: 336 RSGARPDSITLVSLLPALTDLNGLKQG 362



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 134/293 (45%), Gaps = 14/293 (4%)

Query: 107 NANTLVSVLSACSSLVSHKLGKAIHAHSLRN---LNENNIILDNAILDFYIRCGSLASCG 163
           +A+ L++VL  C S     LG  IHA ++ +    + N++ L   +L  Y+         
Sbjct: 31  SADRLLAVLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAV 90

Query: 164 YLFVKMPKRNVVS---WTTMIGGYAERGFCKEAVSVFQEMEKTKEAE-PNEATLVNVLSA 219
            +F  +P+    S   W  +I G+   G    AV  + +M     A  P+  TL  V+ +
Sbjct: 91  AVFSALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKS 150

Query: 220 CSSISALSFGKYVHSYISTRYDLSVSN--LVGNAVINMYVKCGDVGIAIQVFNMLAYKDK 277
           C+++ A+S G+ VH    T   + ++N   VG+A++ MY   G +G A   F+ +  +D 
Sbjct: 151 CAALGAMSLGRLVH---RTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDC 207

Query: 278 ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKA 337
           + W+ ++ G    G    A++LF  M  +   P+  T    +S C+    +  G  L  +
Sbjct: 208 VLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQL-HS 266

Query: 338 MSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 390
           ++    + P++     ++ MY +   L++A      MP + +   W  +++ C
Sbjct: 267 LAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMP-QDDLVTWNGMISGC 318



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 7/180 (3%)

Query: 8   YNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           YN+ T + AL AC+         EIH   I+     DIF +++L+  Y    ++  A ++
Sbjct: 543 YNNITISAALSACASLPAIYYGKEIHGVTIKGPIKADIFAESALIDMYAKCGNLELALRV 602

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSAC--SSLV 122
           F  +   + VSW +IIS     G  KE++ +  G+     KP+  T ++++SAC  + LV
Sbjct: 603 FEFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISACAHAGLV 662

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMI 181
              + +     + + L    +     ++D Y R G L         MP K +   W  ++
Sbjct: 663 EEGV-QLFQCMTKKYLIAPRMEHFACMVDLYSRSGKLDKAIQFIADMPFKPDAGIWGALL 721


>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
          Length = 1753

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 166/531 (31%), Positives = 275/531 (51%), Gaps = 77/531 (14%)

Query: 7    SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
            S + +TF   ++AC+L    +    +H HV+E G   ++ + N L+  Y  +  +  A +
Sbjct: 970  SADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARK 1029

Query: 67   IFNSVVF-----------------------------------PDVVSWTTIISGLSKCGF 91
            +F  +                                     P++V+WT+++S  ++CG 
Sbjct: 1030 VFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQ 1089

Query: 92   HKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148
            H E +++F  + ++     A  L  VLS    L +   GK IH + ++   EN + + N+
Sbjct: 1090 HVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNS 1149

Query: 149  ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE--- 205
            ++  Y + G++ +   LF+++  +N+VSW  +I  YA+ G+C EA ++F ++EKT E   
Sbjct: 1150 LICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPM 1209

Query: 206  -----------------------------------AEPNEATLVNVLSACSSISALSFGK 230
                                                + N  T+ +VLS C+ ++AL  G+
Sbjct: 1210 VRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGR 1269

Query: 231  YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMN 290
             +H ++  R  +  + LVGN +INMY K G       VF  +  KD ISW+T+++G  ++
Sbjct: 1270 EIHGHV-VRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIH 1328

Query: 291  GCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQH 350
            G G  A++ F  MI +   PD VTF+A++SACSH GLV +G  LF  M   + + PQM+H
Sbjct: 1329 GLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEH 1388

Query: 351  YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKK 410
            YAC+VD+ GRAGLL+EA   ++ MP+E    VWGALLN+CR+H+N E+ +     + N  
Sbjct: 1389 YACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLN 1448

Query: 411  GVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
                G++ L+SN +A + RWED+ K+R   +  GLKK  G SWI+V   ++
Sbjct: 1449 SEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVY 1499



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 121/506 (23%), Positives = 202/506 (39%), Gaps = 120/506 (23%)

Query: 13   FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
            F   L+ CS +H  Q   +IH+ +I  G     F+   ++  Y     +  A ++F    
Sbjct: 875  FNDLLQQCSKSHLSQ---QIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSP 931

Query: 73   ---FPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKL 126
               F +++ W +I+      G+ +EA++++C    + V  +  T   V+ AC+ + S KL
Sbjct: 932  IECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKL 991

Query: 127  GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
             +++H H +    + N+ + N ++  Y + G +     +F +M  R+ VSW TM+ GYA 
Sbjct: 992  CRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYAL 1051

Query: 187  RGFCKEAVSVFQEMEKTKEAEPNEAT---------------------------------- 212
               C  A  +F+ M  +   EPN  T                                  
Sbjct: 1052 NYDCHGASEMFR-MMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAE 1110

Query: 213  -LVNVLSACSSISALSFGKYVHSYI--------------------------STR---YDL 242
             L  VLS    ++A   GK +H Y+                          + R    ++
Sbjct: 1111 ALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEI 1170

Query: 243  SVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDK--------ISWSTVISGLAMNGCG 293
               N+V  NA+I+ Y   G    A  +F  L   D+        +SWS VI G A  G G
Sbjct: 1171 KTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQG 1230

Query: 294  RQALQLFSLMIINAVFPDDVTFIALISACS-----------HGG----------LVDQGL 332
             +AL+LF  M +  V  + VT  +++S C+           HG           LV  GL
Sbjct: 1231 EEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGL 1290

Query: 333  I-------LFKAMSTVYEIV--PQMQHYACVVDMYGRAGLLEEAEAFIREM---PIEAEW 380
            I        FK  + V+E +    +  +  +V  YG  GL E A     +M     E + 
Sbjct: 1291 INMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDG 1350

Query: 381  SVWGALLNACR----IHRNDEMFDRI 402
              + A+L+AC     +    E+FD++
Sbjct: 1351 VTFVAVLSACSHAGLVAEGRELFDKM 1376


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 166/486 (34%), Positives = 271/486 (55%), Gaps = 35/486 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +TFT  L  C+      +  +IHAH+I      +I ++  L+H Y     +  A +IF
Sbjct: 478 DQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIF 537

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           N +   +  SW ++I G  + G  +EA+ +F  +    +KP+  +L S+LS+C SL   +
Sbjct: 538 NRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQ 597

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLA------------------------- 160
            G+ +H   +RN  E   IL   ++D Y +CGS+                          
Sbjct: 598 KGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFV 657

Query: 161 ------SCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
                     LF +M +RN   W +++ GYA +G  KE+ + F EM ++ + E +  T+V
Sbjct: 658 NSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLES-DIEYDVLTMV 716

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
            +++ CSS+ AL  G  +HS I  +  ++ S ++  A+++MY KCG +  A  VF+ +  
Sbjct: 717 TIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNG 776

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           K+ +SW+ +ISG + +GC ++AL L+  M    ++P++VTF+A++SACSH GLV++GL +
Sbjct: 777 KNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRI 836

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F +M   Y I  + +HY C+VD+ GRAG LE+A+ F+ +MPIE E S WGALL ACR+H+
Sbjct: 837 FTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHK 896

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           + +M     Q L      + G + +MSN +A A RW++   IR  ++  G+KK  G SWI
Sbjct: 897 DMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWI 956

Query: 455 EVNPSI 460
           E+N  I
Sbjct: 957 EINSEI 962



 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 217/413 (52%), Gaps = 23/413 (5%)

Query: 4   CPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFS 63
           CP   +++TF  AL+ C          ++H+ +I  G   D F+ N+L+  Y    D  S
Sbjct: 273 CP---DNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEES 329

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSS 120
             ++F+ +   + V+W +IIS  ++ G   +A+ +F  +     K N   L S+L A + 
Sbjct: 330 CLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAG 389

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           L     G+ +H H +RNL  ++IIL +A++D Y +CG +     +F  + +RN VS+  +
Sbjct: 390 LADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNAL 449

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           + GY + G  +EA+ ++ +M+     +P++ T   +L+ C++    + G+ +H+++  R 
Sbjct: 450 LAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHL-IRA 508

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
           +++ + +V   +++MY +CG +  A ++FN +A ++  SW+++I G   NG  ++AL+LF
Sbjct: 509 NITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLF 568

Query: 301 SLMIINAVFPDDVTFIALISAC-----SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVV 355
             M +N + PD  +  +++S+C     S  G      I+   M    E + Q+     +V
Sbjct: 569 KQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEE--EGILQV----VLV 622

Query: 356 DMYGRAGLLEEA----EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQ 404
           DMY + G ++ A    +  I++  I     V  A +N+ R +    +FD++ Q
Sbjct: 623 DMYAKCGSMDYAWKVYDQTIKKDVILNNVMV-SAFVNSGRANDAKNLFDQMEQ 674



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 195/403 (48%), Gaps = 18/403 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +TF   +KAC          ++ + V++ G   ++F+  +L+  Y     +  A    
Sbjct: 174 DKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSL 233

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEA---IDMFCGIDVKPNANTLVSVLSACSSLVSHK 125
           + +    VV+W  +I+G  K    +EA    D    I V P+  T  S L  C +L S  
Sbjct: 234 DEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRD 293

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK +H+  +    + +  + NA++D Y +C    SC  +F +M +RN V+W ++I   A
Sbjct: 294 GGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEA 353

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G   +A+ +F  M+++   + N   L ++L A + ++ +  G+ +H ++  R  L+  
Sbjct: 354 QFGHFNDALVLFLRMQESG-YKSNRFNLGSILMASAGLADIGKGRELHGHL-VRNLLNSD 411

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF-SLMI 304
            ++G+A+++MY KCG V  A QVF  L  ++++S++ +++G    G   +AL+L+  +  
Sbjct: 412 IILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQS 471

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLI----LFKAMSTVYEIVPQMQHYACVVDMYGR 360
            + + PD  TF  L++ C++    +QG      L +A  T   IV        +V MY  
Sbjct: 472 EDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETE-----LVHMYSE 526

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIR 403
            G L  A+     M     +S W +++      +N E  + +R
Sbjct: 527 CGRLNYAKEIFNRMAERNAYS-WNSMIEG--YQQNGETQEALR 566



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 104/223 (46%), Gaps = 7/223 (3%)

Query: 103 DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC 162
           DV P   +  S++  C    S + GK+IH   + N    +  L   IL  Y R G L   
Sbjct: 68  DVNPLPYS--SLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDL 125

Query: 163 GY---LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
            Y   LF +MP+RN+ +W TMI  YA      E + ++  M  +     ++ T  +V+ A
Sbjct: 126 CYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFS-DKFTFPSVIKA 184

Query: 220 CSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS 279
           C ++  +   + + S +  +  L+ +  VG A+++ Y + G +  A+   + +     ++
Sbjct: 185 CIAMEDMGGVRQLQSSV-VKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVT 243

Query: 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
           W+ VI+G        +A  +F  M+   V PD+ TF + +  C
Sbjct: 244 WNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVC 286


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 158/440 (35%), Positives = 268/440 (60%), Gaps = 9/440 (2%)

Query: 28  KALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS 87
           + L IHA +I  GH  D F+   LL        I  A +IF     P+V  +T +I G  
Sbjct: 54  QVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFV 113

Query: 88  KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
             G + EAI ++  +    + P+   + S+L AC S ++ + G+ +H+ +L+    +N +
Sbjct: 114 SSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRL 173

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPK----RNVVSWTTMIGGYAERGFCKEAVSVFQEM 200
           +   I++ Y +CG L     +F +MP+    ++ V WT MI G+        A+  F+ M
Sbjct: 174 VRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGM 233

Query: 201 EKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCG 260
           +  +   PNE T+V VLSACS + AL  G++VHSY+  ++++ ++  VGNA+INMY +CG
Sbjct: 234 Q-GENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMR-KFEIELNLFVGNALINMYSRCG 291

Query: 261 DVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALIS 320
            +  A  VF+ +  +D I+++T+ISGL+MNG  RQA++LF +M+   + P +VTF+ +++
Sbjct: 292 SIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLN 351

Query: 321 ACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 380
           ACSHGGLVD G  +F +M+  Y + PQ++HY C+VD+ GR G LEEA   IR M +  + 
Sbjct: 352 ACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDH 411

Query: 381 SVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEI 440
            + G LL+AC++H+N E+ +++ ++L ++     GT+ L+S+ +A + +W++  ++R ++
Sbjct: 412 IMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKM 471

Query: 441 RRMGLKKKTGCSWIEVNPSI 460
           +  G++K+ GCS IEVN  I
Sbjct: 472 KEAGMQKEPGCSSIEVNNEI 491


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  312 bits (799), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 171/449 (38%), Positives = 274/449 (61%), Gaps = 15/449 (3%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T+   +KAC+ +      L +H HV++ G   D +I NSL+H Y   KD+ +A Q+F+  
Sbjct: 2   TYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLC 61

Query: 72  VFPDVVSWTTIISGLSK---CGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
              DVVSW  +I G  K    G  +   D     DV  + NT+++  +         +GK
Sbjct: 62  SDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVI-SWNTIINGYAI--------VGK 112

Query: 129 AIHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
              A  L   + E N++  N++L  +++CG++     LF +MP R+VVSW +M+  YA+ 
Sbjct: 113 IDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQC 172

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G   EA+++F +M +    +P EAT+V++LSAC+ + AL  G ++H+YI+    + V+++
Sbjct: 173 GKPNEALALFDQM-RAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNR-IEVNSI 230

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           VG A+++MY KCG + +A QVFN +  KD ++W+T+I+G+A++G  ++A QLF  M   +
Sbjct: 231 VGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEAS 290

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           V P+D+TF+A++SACSH G+VD+G  L   MS+ Y I P+++HY CV+D+  RAGLLEEA
Sbjct: 291 VEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEA 350

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
              I  MP+E   S  GALL  CRIH N E+ + + + L+N +    G + L+SN +A A
Sbjct: 351 MELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAA 410

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
            +W+D  K+R+ ++  G+ K  G S IE+
Sbjct: 411 KKWDDARKVRNLMKVNGISKVPGVSVIEL 439


>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
          Length = 954

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 166/531 (31%), Positives = 275/531 (51%), Gaps = 77/531 (14%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S + +TF   ++AC+L    +    +H HV+E G   ++ + N L+  Y  +  +  A +
Sbjct: 132 SADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARK 191

Query: 67  IFNSVVF-----------------------------------PDVVSWTTIISGLSKCGF 91
           +F  +                                     P++V+WT+++S  ++CG 
Sbjct: 192 VFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQ 251

Query: 92  HKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148
           H E +++F  + ++     A  L  VLS    L +   GK IH + ++   EN + + N+
Sbjct: 252 HVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNS 311

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE--- 205
           ++  Y + G++ +   LF+++  +N+VSW  +I  YA+ G+C EA ++F ++EKT E   
Sbjct: 312 LICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPM 371

Query: 206 -----------------------------------AEPNEATLVNVLSACSSISALSFGK 230
                                               + N  T+ +VLS C+ ++AL  G+
Sbjct: 372 VRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGR 431

Query: 231 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMN 290
            +H ++  R  +  + LVGN +INMY K G       VF  +  KD ISW+T+++G  ++
Sbjct: 432 EIHGHV-VRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIH 490

Query: 291 GCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQH 350
           G G  A++ F  MI +   PD VTF+A++SACSH GLV +G  LF  M   + + PQM+H
Sbjct: 491 GLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEH 550

Query: 351 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKK 410
           YAC+VD+ GRAGLL+EA   ++ MP+E    VWGALLN+CR+H+N E+ +     + N  
Sbjct: 551 YACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLN 610

Query: 411 GVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
               G++ L+SN +A + RWED+ K+R   +  GLKK  G SWI+V   ++
Sbjct: 611 SEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVY 661



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 121/510 (23%), Positives = 204/510 (40%), Gaps = 120/510 (23%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV- 71
           F   L+ CS +H  Q   +IH+ +I  G     F+   ++  Y     +  A ++F    
Sbjct: 37  FNDLLQQCSKSHLSQ---QIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSP 93

Query: 72  --VFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKL 126
              F +++ W +I+      G+ +EA++++C    + V  +  T   V+ AC+ + S KL
Sbjct: 94  IECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKL 153

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
            +++H H +    + N+ + N ++  Y + G +     +F +M  R+ VSW TM+ GYA 
Sbjct: 154 CRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYAL 213

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEAT---------------------------------- 212
              C  A  +F+ M  +   EPN  T                                  
Sbjct: 214 NYDCHGASEMFR-MMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAE 272

Query: 213 -LVNVLSACSSISALSFGKYVHSYI--------------------------STR---YDL 242
            L  VLS    ++A   GK +H Y+                          + R    ++
Sbjct: 273 ALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEI 332

Query: 243 SVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDK--------ISWSTVISGLAMNGCG 293
              N+V  NA+I+ Y   G    A  +F  L   D+        +SWS VI G A  G G
Sbjct: 333 KTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQG 392

Query: 294 RQALQLFSLMIINAVFPDDVTFIALISACS-----------HGG----------LVDQGL 332
            +AL+LF  M +  V  + VT  +++S C+           HG           LV  GL
Sbjct: 393 EEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGL 452

Query: 333 I-------LFKAMSTVYEIV--PQMQHYACVVDMYGRAGLLEEAEAFIREM---PIEAEW 380
           I        FK  + V+E +    +  +  +V  YG  GL E A     +M     E + 
Sbjct: 453 INMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDG 512

Query: 381 SVWGALLNACR----IHRNDEMFDRIRQDL 406
             + A+L+AC     +    E+FD++ ++ 
Sbjct: 513 VTFVAVLSACSHAGLVAEGRELFDKMIKEF 542


>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
          Length = 708

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 166/531 (31%), Positives = 275/531 (51%), Gaps = 77/531 (14%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S + +TF   ++AC+L    +    +H HV+E G   ++ + N L+  Y  +  +  A +
Sbjct: 132 SADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARK 191

Query: 67  IFNSVVF-----------------------------------PDVVSWTTIISGLSKCGF 91
           +F  +                                     P++V+WT+++S  ++CG 
Sbjct: 192 VFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQ 251

Query: 92  HKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148
           H E +++F  + ++     A  L  VLS    L +   GK IH + ++   EN + + N+
Sbjct: 252 HVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNS 311

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE--- 205
           ++  Y + G++ +   LF+++  +N+VSW  +I  YA+ G+C EA ++F ++EKT E   
Sbjct: 312 LICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPM 371

Query: 206 -----------------------------------AEPNEATLVNVLSACSSISALSFGK 230
                                               + N  T+ +VLS C+ ++AL  G+
Sbjct: 372 VRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGR 431

Query: 231 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMN 290
            +H ++  R  +  + LVGN +INMY K G       VF  +  KD ISW+T+++G  ++
Sbjct: 432 EIHGHV-VRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIH 490

Query: 291 GCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQH 350
           G G  A++ F  MI +   PD VTF+A++SACSH GLV +G  LF  M   + + PQM+H
Sbjct: 491 GLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEH 550

Query: 351 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKK 410
           YAC+VD+ GRAGLL+EA   ++ MP+E    VWGALLN+CR+H+N E+ +     + N  
Sbjct: 551 YACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLN 610

Query: 411 GVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
               G++ L+SN +A + RWED+ K+R   +  GLKK  G SWI+V   ++
Sbjct: 611 SEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVY 661



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 121/510 (23%), Positives = 204/510 (40%), Gaps = 120/510 (23%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV- 71
           F   L+ CS +H  Q   +IH+ +I  G     F+   ++  Y     +  A ++F    
Sbjct: 37  FNDLLQQCSKSHLSQ---QIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSP 93

Query: 72  --VFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKL 126
              F +++ W +I+      G+ +EA++++C    + V  +  T   V+ AC+ + S KL
Sbjct: 94  IECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKL 153

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
            +++H H +    + N+ + N ++  Y + G +     +F +M  R+ VSW TM+ GYA 
Sbjct: 154 CRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYAL 213

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEAT---------------------------------- 212
              C  A  +F+ M  +   EPN  T                                  
Sbjct: 214 NYDCHGASEMFR-MMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAE 272

Query: 213 -LVNVLSACSSISALSFGKYVHSYI--------------------------STR---YDL 242
            L  VLS    ++A   GK +H Y+                          + R    ++
Sbjct: 273 ALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEI 332

Query: 243 SVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDK--------ISWSTVISGLAMNGCG 293
              N+V  NA+I+ Y   G    A  +F  L   D+        +SWS VI G A  G G
Sbjct: 333 KTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQG 392

Query: 294 RQALQLFSLMIINAVFPDDVTFIALISACS-----------HGG----------LVDQGL 332
            +AL+LF  M +  V  + VT  +++S C+           HG           LV  GL
Sbjct: 393 EEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGL 452

Query: 333 I-------LFKAMSTVYEIV--PQMQHYACVVDMYGRAGLLEEAEAFIREM---PIEAEW 380
           I        FK  + V+E +    +  +  +V  YG  GL E A     +M     E + 
Sbjct: 453 INMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDG 512

Query: 381 SVWGALLNACR----IHRNDEMFDRIRQDL 406
             + A+L+AC     +    E+FD++ ++ 
Sbjct: 513 VTFVAVLSACSHAGLVAEGRELFDKMIKEF 542


>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 652

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 169/483 (34%), Positives = 270/483 (55%), Gaps = 35/483 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +H TF   LKAC+          +  +V+  G   D+F+ N+ +HF      +  A ++F
Sbjct: 119 DHLTFPFLLKACARLQERNYGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEARKLF 178

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSH 124
           +     D+VSW T+I G  + G  +EA++MF  +     V P+  T++ V+S  + L   
Sbjct: 179 DGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDL 238

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           +LG+ +H +   +     + L N ++D YI+CG L     +F  + K+ +VSWTTMI GY
Sbjct: 239 ELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGY 298

Query: 185 AERGFCKEAVSVFQEM------------------EKTKEA------------EPNEATLV 214
           A+ G   +A  VF EM                  ++ KEA            EP++ T+V
Sbjct: 299 AQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMV 358

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
           N+LSACS + AL  G +VH YI  R  +S+S ++G  +++MY KCG++  AI+VF  +  
Sbjct: 359 NLLSACSQLGALEMGMWVHHYIDRRR-VSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIPE 417

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           K+ ++W+ +ISGLA +G    A++ F  MI   + PD++TFI ++SAC H GLV +G   
Sbjct: 418 KNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSACCHAGLVKEGQEF 477

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F  M + Y +  +M+HY+C+VD+ GRAG L+EAE  +  MP+E +  VWGAL  ACR+H 
Sbjct: 478 FSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEHLVNTMPMEPDAVVWGALFFACRMHG 537

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           N  + ++    LV       G + L++N +A A+  +  +K+R  +R +G++K  GCS I
Sbjct: 538 NITLGEKAAMKLVELDPGDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCI 597

Query: 455 EVN 457
           E+N
Sbjct: 598 ELN 600



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 166/357 (46%), Gaps = 40/357 (11%)

Query: 74  PDVVS-WTTIISGLSKC---GFHKEAIDMFCGI--DVKPNANTLVSVLSACSSLVSHKLG 127
           PD  S +   +  LS C   G     + ++C +    +P+  T   +L AC+ L     G
Sbjct: 80  PDSASPYNAALRALSLCTDRGLVTRCLPLYCSLLRSARPDHLTFPFLLKACARLQERNYG 139

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
            A+  + L      ++ + NA + F   C S+A    LF     R++VSW T+IGGY  R
Sbjct: 140 NAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEARKLFDGSHVRDLVSWNTLIGGYVRR 199

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G  +EA+ +F  M       P+E T++ V+S  + +  L  G+ +H Y+ + + +  +  
Sbjct: 200 GVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELGRRLHGYVES-HGVRCTVR 258

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC--------------- 292
           + N V++MY+KCGD+  A  VF  +  K  +SW+T+I G A  G                
Sbjct: 259 LMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERD 318

Query: 293 ----------------GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFK 336
                           G++AL+LF  M    V PDD+T + L+SACS  G ++ G+ +  
Sbjct: 319 VFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVHH 378

Query: 337 AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
            +     +   +     +VDMY + G +E+A    +E+P E     W A+++    H
Sbjct: 379 YIDR-RRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIP-EKNALTWTAMISGLANH 433


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 162/457 (35%), Positives = 265/457 (57%), Gaps = 6/457 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T T A+ +C+      + +EIH  +I  G L D FI ++L+  Y     +  A ++F
Sbjct: 206 NSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVF 265

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
             +    VV+W ++ISG    G     I +F  +    VKP   TL S++  CS      
Sbjct: 266 EQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLL 325

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK +H +++RN  ++++ ++++++D Y +CG +     +F  +PK  VVSW  MI GY 
Sbjct: 326 EGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYV 385

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G   EA+ +F EM K+   EP+  T  +VL+ACS ++AL  G+ +H+ I  +  L  +
Sbjct: 386 AEGKLFEALGLFSEMRKSY-VEPDAITFTSVLTACSQLAALEKGEEIHNLIIEK-KLDNN 443

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
            +V  A+++MY KCG V  A  VF  L  +D +SW+++I+    +G    AL+LF+ M+ 
Sbjct: 444 EVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGQAYVALELFAEMLQ 503

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
           + + PD VTF+A++SAC H GLVD+G   F  M  VY I+P+++HY+C++D+ GRAG L 
Sbjct: 504 SNMKPDRVTFLAILSACGHAGLVDEGCYYFNQMVNVYGIIPRVEHYSCLIDLLGRAGRLH 563

Query: 366 EAEAFIREMP-IEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           EA   +++ P I  +  +   L +ACR+HRN ++   I + L++K      T+ L+SN +
Sbjct: 564 EAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILLSNMY 623

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           A A +W++   +R +++ +GLKK  GCSWIE+N  I 
Sbjct: 624 ASAHKWDEVRVVRSKMKELGLKKNPGCSWIEINQKIL 660



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 120/425 (28%), Positives = 215/425 (50%), Gaps = 23/425 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YT+   LKAC   + +     IH  +++ G + DI + +SL+  Y        A  +F
Sbjct: 105 DSYTYPSVLKACGGLYKYVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLF 164

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHK 125
           N +   DV  W T+IS   + G  KEA++ F        +PN+ T+ + +S+C+ L+   
Sbjct: 165 NEMPEKDVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLN 224

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G  IH   + +    +  + +A++D Y +CG L     +F +MPK+ VV+W +MI GY 
Sbjct: 225 RGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYG 284

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
            +G     + +F+ M   +  +P   TL +++  CS  + L  GK+VH Y + R  +   
Sbjct: 285 LKGDSISCIQLFKRM-YNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGY-TIRNRIQSD 342

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             + ++++++Y KCG V +A  +F ++     +SW+ +ISG    G   +AL LFS M  
Sbjct: 343 VFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRK 402

Query: 306 NAVFPDDVTFIALISACSHGGLVDQG-----LILFKAMSTVYEIVPQMQHYACVVDMYGR 360
           + V PD +TF ++++ACS    +++G     LI+ K +    E+V        ++DMY +
Sbjct: 403 SYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIEKKLDN-NEVV-----MGALLDMYAK 456

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQDLVNKKGVSVGT 416
            G ++EA +  + +P + +   W +++ A   H       E+F  + Q   N K   V  
Sbjct: 457 CGAVDEAFSVFKCLP-KRDLVSWTSMITAYGSHGQAYVALELFAEMLQS--NMKPDRVTF 513

Query: 417 FALMS 421
            A++S
Sbjct: 514 LAILS 518



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 108/433 (24%), Positives = 218/433 (50%), Gaps = 21/433 (4%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           L+AC  +   ++   IH  V+  G  +DIF+  +L++ Y++      A  +F+++  P  
Sbjct: 10  LRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNMENPCE 69

Query: 77  VS-WTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIH 131
           +S W  +++G +K   + EA+++F  +     +KP++ T  SVL AC  L  + LGK IH
Sbjct: 70  ISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKMIH 129

Query: 132 AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
              ++     +I++ ++++  Y +C +     +LF +MP+++V  W T+I  Y + G  K
Sbjct: 130 TCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFK 189

Query: 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNA 251
           EA+  F  M +    EPN  T+   +S+C+ +  L+ G  +H  +     L + + + +A
Sbjct: 190 EALEYFGLMRRFG-FEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFL-LDSFISSA 247

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD 311
           +++MY KCG + +AI+VF  +  K  ++W+++ISG  + G     +QLF  M    V P 
Sbjct: 248 LVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPT 307

Query: 312 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQH----YACVVDMYGRAGLLEEA 367
             T  +LI  CS    + +G  +       Y I  ++Q      + ++D+Y + G +E A
Sbjct: 308 LTTLSSLIMVCSRSARLLEGKFVHG-----YTIRNRIQSDVFINSSLMDLYFKCGKVELA 362

Query: 368 EAFIREMPIEAEWSVWGALLNAC----RIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           E   + +P +++   W  +++      ++     +F  +R+  V    ++  +     + 
Sbjct: 363 ENIFKLIP-KSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQ 421

Query: 424 FAGADRWEDTNKI 436
            A  ++ E+ + +
Sbjct: 422 LAALEKGEEIHNL 434



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 132/281 (46%), Gaps = 25/281 (8%)

Query: 107 NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLF 166
           +   L+ +L AC +  S K GK IH   +    +N+I L   +++ Y+ C        +F
Sbjct: 2   DTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVF 61

Query: 167 VKMPKRNVVS-WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
             M     +S W  ++ GY +     EA+ +F+++      +P+  T  +VL AC  +  
Sbjct: 62  DNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYK 121

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285
              GK +H+ +  +  L +  +VG++++ MY KC     AI +FN +  KD   W+TVIS
Sbjct: 122 YVLGKMIHTCL-VKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVIS 180

Query: 286 GLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS-----------HGGLVDQGLIL 334
               +G  ++AL+ F LM      P+ VT    IS+C+           H  L++ G +L
Sbjct: 181 CYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLL 240

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP 375
              +S+             +VDMYG+ G LE A     +MP
Sbjct: 241 DSFISSA------------LVDMYGKCGHLEMAIEVFEQMP 269


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  311 bits (797), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 166/467 (35%), Positives = 278/467 (59%), Gaps = 15/467 (3%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML   +  +  T    L A +  +  ++  E+H ++I      D F+ ++L+  Y   +D
Sbjct: 334 MLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRD 393

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF------CGIDVKPNANTLVSV 114
           + +A  ++++    DVV  +T+ISG    G  ++A+ MF      C   +KPNA T+ SV
Sbjct: 394 VRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQC---IKPNAVTVASV 450

Query: 115 LSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV 174
           L AC+S+ +  LG+ IH + LRN  E    +++A++D Y +CG L    Y+F KM  ++ 
Sbjct: 451 LPACASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDE 510

Query: 175 VSWTTMIGGYAERGFCKEAVSVFQEM--EKTKEAEPNEATLVNVLSACSSISALSFGKYV 232
           V+W +MI  +++ G  +EA+ +F++M  E  K    N  T+ + LSAC+S+ A+ +GK +
Sbjct: 511 VTWNSMISSFSQNGEPQEALDLFRQMCMEGIKY---NNVTISSALSACASLPAIYYGKEI 567

Query: 233 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
           H  I  +  +       +A+I+MY KCG++ +A++VF  +  K+++SW+++IS    +G 
Sbjct: 568 HGVI-IKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNEVSWNSIISAYGAHGL 626

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
            ++++     M      PD VTF+ALISAC+H GLV++GL LF+ M+  Y I P+M+H+A
Sbjct: 627 VKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTKEYLIAPRMEHFA 686

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           C+VD+Y R+G L++A  FI +MP + +  +WGALL+ACR+HRN E+ D   Q+L      
Sbjct: 687 CMVDLYSRSGRLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELADIASQELFKLDPG 746

Query: 413 SVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPS 459
           + G + LMSN  A A RW+  +K+R  ++   + K  G SW++VN S
Sbjct: 747 NSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNNS 793



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 210/393 (53%), Gaps = 17/393 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L  C+        +++H+  ++ G   ++ + N+LL  Y   + +  A ++F
Sbjct: 241 NFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLF 300

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
             +   D+V+W  +ISG  + G   EA+ +FC +     +P++ TLVS+L A + L   K
Sbjct: 301 ELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLK 360

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK +H + +RN    +  L +A++D Y +C  + +   L+      +VV  +T+I GY 
Sbjct: 361 QGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYV 420

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G  ++A+ +F+ + + +  +PN  T+ +VL AC+SISAL  G+ +H Y+  R      
Sbjct: 421 LNGMSEKALQMFRYLLE-QCIKPNAVTVASVLPACASISALPLGQEIHGYV-LRNAYEGK 478

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V +A+++MY KCG + ++  +F+ ++ KD+++W+++IS  + NG  ++AL LF  M +
Sbjct: 479 CYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCM 538

Query: 306 NAVFPDDVTFIALISACS-----HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
             +  ++VT  + +SAC+     + G    G+I+   +    +I  +    + ++DMY +
Sbjct: 539 EGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKA--DIFAE----SALIDMYAK 592

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
            G +E A      MP + E S W ++++A   H
Sbjct: 593 CGNMELALRVFEFMPDKNEVS-WNSIISAYGAH 624



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/407 (26%), Positives = 198/407 (48%), Gaps = 11/407 (2%)

Query: 3   SCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIF 62
           + PS   H T    +K+C+          +H      G   D+++ ++L+  Y     + 
Sbjct: 135 AAPSPDAH-TLPYVVKSCAALGAVSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLR 193

Query: 63  SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACS 119
            A   F+ + + D V W  ++ G  K G    A+ +F  + V   +PN  TL   LS C+
Sbjct: 194 DARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCA 253

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
           +      G  +H+ +++   E  + + N +L  Y +C  L     LF  +P+ ++V+W  
Sbjct: 254 AEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNG 313

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           MI G  + G   EA+ +F +M ++  A P+  TLV++L A + ++ L  GK VH YI  R
Sbjct: 314 MISGCVQNGLLDEALGLFCDMLRSG-ARPDSVTLVSLLPALTDLNGLKQGKEVHGYI-IR 371

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
             + +   + +A++++Y KC DV  A  +++     D +  STVISG  +NG   +ALQ+
Sbjct: 372 NCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQM 431

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQMQHYACVVDMY 358
           F  ++   + P+ VT  +++ AC+    +  G  I    +   YE    ++  + ++DMY
Sbjct: 432 FRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYVE--SALMDMY 489

Query: 359 GRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDRIRQ 404
            + G L+ +     +M ++ E + W +++++  +     E  D  RQ
Sbjct: 490 AKCGRLDLSHYIFSKMSLKDEVT-WNSMISSFSQNGEPQEALDLFRQ 535



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 161/327 (49%), Gaps = 15/327 (4%)

Query: 17  LKACSLAHPHQK-ALEIHAHVIEYGHLHD---IFIQNSLLHFYVTVKDIFSAHQIFNSV- 71
           L+ C ++ PH    L+IHA  +  G L +   + +   LL  YV  +    A  +F+++ 
Sbjct: 39  LRGC-VSAPHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAVFSALP 97

Query: 72  --VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI-----DVKPNANTLVSVLSACSSLVSH 124
                  + W  +I G +  G H  A+  +  +        P+A+TL  V+ +C++L + 
Sbjct: 98  RAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGAV 157

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
            LG+ +H  +      +++ + +A++  Y   G L      F  MP R+ V W  M+ GY
Sbjct: 158 SLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGY 217

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
            + G    AV +F+ M +    EPN ATL   LS C++ + L  G  +HS ++ +  L  
Sbjct: 218 IKAGDVGGAVRLFRNM-RVSGCEPNFATLACFLSVCAAEADLLSGVQLHS-LAVKCGLEQ 275

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
              V N +++MY KC  +  A ++F +L   D ++W+ +ISG   NG   +AL LF  M+
Sbjct: 276 EVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDML 335

Query: 305 INAVFPDDVTFIALISACSHGGLVDQG 331
            +   PD VT ++L+ A +    + QG
Sbjct: 336 RSGARPDSVTLVSLLPALTDLNGLKQG 362



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 134/291 (46%), Gaps = 10/291 (3%)

Query: 107 NANTLVSVLSACSSLVSHKLGKAIHAHSLRN---LNENNIILDNAILDFYIRCGSLASCG 163
           +A+ L+++L  C S     LG  IHA ++ +    N N++ L   +L  Y+         
Sbjct: 31  SADRLLALLRGCVSAPHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAV 90

Query: 164 YLFVKMPKR---NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE-PNEATLVNVLSA 219
            +F  +P+    + + W  +I G+   G    AV  + +M     A  P+  TL  V+ +
Sbjct: 91  AVFSALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKS 150

Query: 220 CSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS 279
           C+++ A+S G+ VH   +    L+    VG+A+I MY   G +  A   F+ + ++D + 
Sbjct: 151 CAALGAVSLGRLVHR-TARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVL 209

Query: 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMS 339
           W+ ++ G    G    A++LF  M ++   P+  T    +S C+    +  G+ L  +++
Sbjct: 210 WNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQL-HSLA 268

Query: 340 TVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 390
               +  ++     ++ MY +   L++A      +P + +   W  +++ C
Sbjct: 269 VKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRD-DLVTWNGMISGC 318


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  311 bits (797), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 165/455 (36%), Positives = 268/455 (58%), Gaps = 16/455 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +TF    K+C +     +  ++H H  + G   D +IQN+L++ Y     + SA ++F
Sbjct: 139 DRFTFPSLFKSCGVL---CEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVF 195

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           + +V   VVSW T+I   ++     EAI +F  ++   VKPN  TLV+VL+AC+     +
Sbjct: 196 DKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLE 255

Query: 126 LGKAIHAHSLRNLNENNI----ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
             K +H +    ++E  I    +L +A++D Y +CG       LF KMP++N+  W  MI
Sbjct: 256 TAKQVHKY----IDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMI 311

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
            G+ E    +EA+S+F EM+ +   + ++ T+ ++L AC+ + AL  GK++H YI  +  
Sbjct: 312 NGHVEDSDYEEALSLFNEMQLSG-VKGDKVTMASLLIACTHLGALELGKWLHVYIE-KEK 369

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
           + V   +G A+++MY KCG +  A++VF  +  KD ++W+ +I GLAM G G +AL+LF 
Sbjct: 370 IEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFH 429

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            M ++ V PD +TF+ +++ACSH GLV++G+  F +M   Y I P ++HY C+VDM GRA
Sbjct: 430 EMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRA 489

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           G + EAE  I+ MP+  ++ V   LL+ACRIH N  + +R  Q L+     + GT+ L+S
Sbjct: 490 GRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLS 549

Query: 422 NTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           N ++    WE   K+R+ +    +KK  GCS IEV
Sbjct: 550 NIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEV 584



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 125/278 (44%), Gaps = 37/278 (13%)

Query: 128 KAIHAHSLRN------LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
           K IHA  LR        + + I+   A+ D     GSL     +F ++P     +  ++I
Sbjct: 57  KQIHAQMLRTCLFVDPFSASKIVAFCALHD----SGSLPYARLVFNQIPNPTTFTCNSII 112

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
            GY  +   ++A+  +Q M   +  +P+  T  ++  +C     L  GK +H + ST+  
Sbjct: 113 RGYTNKNLPRQAILFYQLM-MLQGLDPDRFTFPSLFKSC---GVLCEGKQLHCH-STKLG 167

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
            +    + N ++NMY  CG +  A +VF+ +  K  +SW+T+I   A      +A++LF 
Sbjct: 168 FASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFR 227

Query: 302 LMIINAVFPDDVTFIALISACSHG----------GLVDQGLILFKAMSTVYEIVPQMQHY 351
            M I +V P+++T + +++AC+              +D+  I F  + T           
Sbjct: 228 RMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLT----------- 276

Query: 352 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           + ++D+Y + G    A     +MP E     W  ++N 
Sbjct: 277 SALMDVYCKCGCYPLARDLFNKMP-EKNLFCWNIMING 313


>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
 gi|194706828|gb|ACF87498.1| unknown [Zea mays]
          Length = 570

 Score =  311 bits (797), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 174/488 (35%), Positives = 275/488 (56%), Gaps = 41/488 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +T    +KAC+ A     AL +H   ++ G +  +F+ N+LLH Y +   +  + + F
Sbjct: 44  NEFTLPFVVKACTRAQAWDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFF 103

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKP---NANTLVSVLSACSSLVSHK 125
           + +   +VVSW ++I G ++ G  +EA  +F  +  +    +  TL S+L ACS   + +
Sbjct: 104 DEMAGRNVVSWNSMIGGYAQAGDTREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLE 163

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSL-------------------------- 159
            G+ +H   L + +  ++IL  A++D Y +CG L                          
Sbjct: 164 FGRLVHCLMLVSGSPVDLILGGALVDMYSKCGDLCMARRCFEMMPIKSVVSWTSMLCAQT 223

Query: 160 -------ASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEAT 212
                  A C   F  MP+RN VSW TMI  Y +RG   EA+ ++++M+    A P+EAT
Sbjct: 224 KHGSVDAARC--WFDHMPERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPA-PDEAT 280

Query: 213 LVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 272
           LV VLSAC  I  L+ GK VH YI         +L+ N++++MY KCG V  AI++F  +
Sbjct: 281 LVPVLSACGRIGDLTVGKMVHLYIRDNIHNPDISLI-NSLLDMYAKCGQVDTAIRLFREM 339

Query: 273 AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL 332
             ++ +SW+ +I GLAM+G    A+  F  M+ N   PD +TF+AL+S+CSHGGL++ G 
Sbjct: 340 CNRNVVSWNVIIGGLAMHGRALDAITFFRSMVRNTS-PDGITFVALLSSCSHGGLLETGQ 398

Query: 333 ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI 392
             F++M  VY +  +++HYAC+VD+ GR G LE+A   I+EMP++ +  VWGALL ACRI
Sbjct: 399 HYFESMRHVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRI 458

Query: 393 HRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCS 452
           H N ++  ++ + L+  +G+S G F L+SN     ++WED  ++R  ++  G +K  G S
Sbjct: 459 HGNVKIGKQVIKQLLELEGISGGLFVLISNLLYETNQWEDMKRLRKLMKERGTRKDMGVS 518

Query: 453 WIEVNPSI 460
            IE+N SI
Sbjct: 519 SIEINNSI 526



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 160/343 (46%), Gaps = 39/343 (11%)

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-CGI--DVKPNANTLVSVLSACSSLVS 123
           +F+ ++ PD V + TI          +EA+ +  C +   V PN  TL  V+ AC+   +
Sbjct: 1   MFDGILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQA 60

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
                A+H  +L+      + + NA+L  Y   GSL      F +M  RNVVSW +MIGG
Sbjct: 61  WDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGG 120

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           YA+ G  +EA ++F EM + +    +E TL ++L ACS    L FG+ VH  +       
Sbjct: 121 YAQAGDTREACALFGEMRR-QGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGS-P 178

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---------------------------- 275
           V  ++G A+++MY KCGD+ +A + F M+  K                            
Sbjct: 179 VDLILGGALVDMYSKCGDLCMARRCFEMMPIKSVVSWTSMLCAQTKHGSVDAARCWFDHM 238

Query: 276 ---DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH-GGLVDQG 331
              + +SW+T+IS     G   +AL L+  M  +   PD+ T + ++SAC   G L    
Sbjct: 239 PERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVLSACGRIGDLTVGK 298

Query: 332 LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
           ++       ++   P +     ++DMY + G ++ A    REM
Sbjct: 299 MVHLYIRDNIHN--PDISLINSLLDMYAKCGQVDTAIRLFREM 339



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 109/254 (42%), Gaps = 13/254 (5%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L AC           +H ++ +  H  DI + NSLL  Y     + +A ++F  +
Sbjct: 280 TLVPVLSACGRIGDLTVGKMVHLYIRDNIHNPDISLINSLLDMYAKCGQVDTAIRLFREM 339

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSVLSACS-----SLVSH 124
              +VVSW  II GL+  G   +AI  F  +  +  P+  T V++LS+CS         H
Sbjct: 340 CNRNVVSWNVIIGGLAMHGRALDAITFFRSMVRNTSPDGITFVALLSSCSHGGLLETGQH 399

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIGG 183
                 H +++++  E+       ++D   R G L     L  +MP K +VV W  ++G 
Sbjct: 400 YFESMRHVYNVKHEVEHYA----CMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGA 455

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLV-NVLSACSSISALSFGKYVHSYISTRYDL 242
               G  K    V +++ + +        L+ N+L   +    +   + +     TR D+
Sbjct: 456 CRIHGNVKIGKQVIKQLLELEGISGGLFVLISNLLYETNQWEDMKRLRKLMKERGTRKDM 515

Query: 243 SVSNLVGNAVINMY 256
            VS++  N  I+ +
Sbjct: 516 GVSSIEINNSIHEF 529


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  311 bits (796), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 170/453 (37%), Positives = 263/453 (58%), Gaps = 5/453 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T +  L  C L      AL +H + +++G   ++F+ N+L+  Y  +  +  A  +F+ +
Sbjct: 171 TVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGM 230

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              D+V+W +IISG  + G    A+ MF G+    V P+  TLVS+ SA +     +  K
Sbjct: 231 ECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAK 290

Query: 129 AIHAHSLR-NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           ++H + +R   + ++II  NAI+D Y +  ++ +   +F  MP ++ VSW T+I GY + 
Sbjct: 291 SLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQN 350

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G   EAV  +  M+K +  +  + T V+VL A S + AL  G  +H+ +S +  L+V   
Sbjct: 351 GLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHA-LSIKIGLNVDVY 409

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           VG  +I++Y KCG +  A+ +F  +  +    W+ +ISGL ++G G +AL LFS M    
Sbjct: 410 VGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEG 469

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           + PD VTF++L++ACSH GLVDQG   F  M   Y+IVP  +HYAC+ DM GRAG L+EA
Sbjct: 470 IKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEA 529

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
             FI+ MPI+ + +VWGALL ACRIH N EM     Q+L      +VG + LMSN +A  
Sbjct: 530 FNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKV 589

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            +W+  +++R  +RR  L+K  G S IEV  S+
Sbjct: 590 GKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSV 622



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/425 (26%), Positives = 216/425 (50%), Gaps = 19/425 (4%)

Query: 1   MLSC--PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLH-DIFIQNSLLHFYVT 57
           +LSC  P   + +TF   ++A   A  +  A ++HA  +  G +   +F   SL+H Y+ 
Sbjct: 59  ILSCAYPFRPDGFTFPSLIRA---APSNASAAQLHACALRLGLVRPSVFTSGSLVHAYLR 115

Query: 58  VKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSV 114
              I  A+++F+ +   DV +W  ++SGL +     EA+ +F    G  V  +  T+ SV
Sbjct: 116 FGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSV 175

Query: 115 LSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV 174
           L  C  L    L   +H +++++  +  + + NA++D Y + G L     +F  M  R++
Sbjct: 176 LPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDL 235

Query: 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
           V+W ++I G  +RG    A+ +FQ M +     P+  TLV++ SA +        K +H 
Sbjct: 236 VTWNSIISGCEQRGQTAAALKMFQGM-RGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHC 294

Query: 235 YISTRYDLSVSNLV-GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG 293
           Y+  R    V +++ GNA+++MY K  ++  A ++F+ +  +D +SW+T+I+G   NG  
Sbjct: 295 YV-MRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLA 353

Query: 294 RQALQLFSLMIINAVFPD-DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
            +A++ +  M  +        TF++++ A SH G + QG+ +  A+S    +   +    
Sbjct: 354 NEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRM-HALSIKIGLNVDVYVGT 412

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQDLVN 408
           C++D+Y + G L EA     +MP  +    W A+++   +H +      +F R++Q+ + 
Sbjct: 413 CLIDLYAKCGKLAEAMLLFEKMPRRST-GPWNAIISGLGVHGHGAEALTLFSRMQQEGIK 471

Query: 409 KKGVS 413
              V+
Sbjct: 472 PDHVT 476


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  311 bits (796), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 158/452 (34%), Positives = 268/452 (59%), Gaps = 7/452 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T T  + AC L    +   ++H++V+   +  +I + NSL+  Y++V     A  +F+ +
Sbjct: 238 TMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGM 297

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGK 128
              DVVSWTTIISG        +A++ +  +++    P+  T+ SVLSAC+SL    +G 
Sbjct: 298 ECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGM 357

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H  + R  +   +++ N+++D Y +C  +     +F ++P ++V+SWT++I G     
Sbjct: 358 KLHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINN 417

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
            C EA+  F++M    +++PN  TL++ LSAC+ + AL  GK +H++ + +  +     +
Sbjct: 418 RCFEALIFFRKM--ILKSKPNSVTLISALSACARVGALMCGKEIHAH-ALKAGMGFDGFL 474

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            NA++++YV+CG +  A+  FN L  KD  +W+ +++G A  G G   ++LF  M+ + +
Sbjct: 475 PNAILDLYVRCGRMRTALNQFN-LNEKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEI 533

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PDDVTFI+L+ ACS  G+V +GL  F+ M   Y I P ++HYACVVD+ GRAG L EA 
Sbjct: 534 NPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAH 593

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
            FI  MPI+ + ++WGALLNACRIHR+  + +   Q +  +   S+G + L+ N +A + 
Sbjct: 594 EFIERMPIKPDPAIWGALLNACRIHRHVLLGELAAQHIFKQDAESIGYYILLCNLYADSG 653

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +W++  K+R  ++  GL    GCSW+EV   +
Sbjct: 654 KWDEVAKVRRTMKEEGLIVDPGCSWVEVKGKV 685



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/393 (30%), Positives = 207/393 (52%), Gaps = 26/393 (6%)

Query: 42  LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG 101
           L  + + N+LL  +V   D+ +A  +F  +   D+ SW  ++ G +K GF  EA+ ++  
Sbjct: 66  LLSVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHR 125

Query: 102 I---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGS 158
           I    ++P+  T  SVL +C+  +    G+ +HAH +R   + ++ + NA++  Y++CG 
Sbjct: 126 ILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGD 185

Query: 159 LASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLS 218
           + S   LF KMP R+ +SW  MI GY E   C E + +F  M +    +P+  T+ +V+S
Sbjct: 186 VVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELS-IDPDLMTMTSVIS 244

Query: 219 ACSSISALSFGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK 277
           AC  +     G  +HSY + T YD ++S  V N++I MY+  G    A  VF+ +  +D 
Sbjct: 245 ACELLGDERLGTQLHSYVVRTAYDGNIS--VYNSLIQMYLSVGHWKEAESVFSGMECRDV 302

Query: 278 ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKA 337
           +SW+T+ISG   N    +AL+ +  M I    PD+VT  +++SAC+  G +D G+ L   
Sbjct: 303 VSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKL--- 359

Query: 338 MSTVYEIVPQMQHYACVV------DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACR 391
               +E+  +  H   VV      DMY +   +E+A     ++P + +   W +++N  R
Sbjct: 360 ----HELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIP-DKDVISWTSVINGLR 414

Query: 392 IHRNDEMFDRI---RQDLVNKKGVSVGTFALMS 421
           I  N+  F+ +   R+ ++  K  SV   + +S
Sbjct: 415 I--NNRCFEALIFFRKMILKSKPNSVTLISALS 445



 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 114/364 (31%), Positives = 196/364 (53%), Gaps = 15/364 (4%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           YTF   L++C+ A    +  E+HAHV+ +    D+ + N+L+  YV   D+ SA  +F+ 
Sbjct: 136 YTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDK 195

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKLG 127
           +   D +SW  +ISG  +     E +++F     + + P+  T+ SV+SAC  L   +LG
Sbjct: 196 MPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLG 255

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
             +H++ +R   + NI + N+++  Y+  G       +F  M  R+VVSWTT+I G  + 
Sbjct: 256 TQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDN 315

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
               +A+  ++ ME T    P+E T+ +VLSAC+S+  L  G  +H  ++ R    +  +
Sbjct: 316 LLPDKALETYKTMEITGTM-PDEVTIASVLSACASLGQLDMGMKLHE-LAERTGHILYVV 373

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V N++I+MY KC  +  A+++F+ +  KD ISW++VI+GL +N    +AL  F  MI+ +
Sbjct: 374 VANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILKS 433

Query: 308 VFPDDVTFIALISACSHGGLVDQGLIL----FKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
             P+ VT I+ +SAC+  G +  G  +     KA       +P       ++D+Y R G 
Sbjct: 434 K-PNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPN-----AILDLYVRCGR 487

Query: 364 LEEA 367
           +  A
Sbjct: 488 MRTA 491



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 104/223 (46%), Gaps = 11/223 (4%)

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G  ++A+     M++ K     E   V ++  C +    S G+YV   + +     +S  
Sbjct: 12  GNLEQALKHLASMQEVK-IPVEEDCFVALIRLCENKRGYSEGEYVWKAVLSSLVTLLSVR 70

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           +GNA+++M+V+ GDVG A  VF  +  +D  SW+ ++ G    G   +AL L+  ++   
Sbjct: 71  LGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAG 130

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           + PD  TF +++ +C+    + +G  +  A    ++    +     ++ MY + G +  A
Sbjct: 131 IRPDVYTFPSVLRSCAGAMDLVRGREV-HAHVVRFDFDMDVDVVNALITMYVKCGDVVSA 189

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRND------EMFDRIRQ 404
                +MP     S W A+++      ND      E+F R+R+
Sbjct: 190 RMLFDKMPTRDRIS-WNAMISG--YFENDECLEGLELFFRMRE 229



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 16/186 (8%)

Query: 6   SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAH 65
           S  N  T   AL AC+         EIHAH ++ G   D F+ N++L  YV    + +A 
Sbjct: 433 SKPNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRTAL 492

Query: 66  QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSAC--SS 120
             FN +   DV +W  +++G ++ G     +++F  +   ++ P+  T +S+L AC  S 
Sbjct: 493 NQFN-LNEKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSRSG 551

Query: 121 LVSHKLG----KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVV 175
           +V+  L       ++ H   NL          ++D   R G L        +MP K +  
Sbjct: 552 MVTEGLEYFQRMKVNYHITPNLKHY-----ACVVDLLGRAGKLNEAHEFIERMPIKPDPA 606

Query: 176 SWTTMI 181
            W  ++
Sbjct: 607 IWGALL 612


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  310 bits (795), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 169/462 (36%), Positives = 265/462 (57%), Gaps = 8/462 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M S   + N  T+   L ACS +   +    IH+H+ E GH  D+ I N+L+  Y    D
Sbjct: 321 MRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGD 380

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           +  A ++F ++   D++SW  II+G ++     EA+ ++  +    VKP   T + +LSA
Sbjct: 381 LPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSA 440

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C++  ++  GK IH   LR+  ++N  L NA+++ Y RCGSL     +F     R+V+SW
Sbjct: 441 CANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISW 500

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
            +MI G+A+ G  + A  +FQEM+  +E EP+  T  +VLS C +  AL  GK +H  I 
Sbjct: 501 NSMIAGHAQHGSYETAYKLFQEMQ-NEELEPDNITFASVLSGCKNPEALELGKQIHGRI- 558

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
           T   L +   +GNA+INMY++CG +  A  VF+ L ++D +SW+ +I G A  G   +A+
Sbjct: 559 TESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAI 618

Query: 298 QLFSLMIINAVF--PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVV 355
           +LF  M  N  F  PD  TF +++SAC+H GLV +G  +F +M + Y ++P ++HY C+V
Sbjct: 619 ELFWQMQ-NEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLV 677

Query: 356 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVG 415
            + GRA   +EAE  I +MP   + +VW  LL ACRIH N  + +    + +     +  
Sbjct: 678 GLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPA 737

Query: 416 TFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            + L+SN +A A RW+D  KIR  +   G++K+ G SWIEV+
Sbjct: 738 VYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVD 779



 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 130/449 (28%), Positives = 236/449 (52%), Gaps = 14/449 (3%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           P+  +  T+   L+ C+      +A  IHA ++E G   DIF+ N L++ YV  + +  A
Sbjct: 22  PTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDA 81

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSL 121
           HQ+F  +   DV+SW ++IS  ++ GF K+A  +F  +      PN  T +S+L+AC S 
Sbjct: 82  HQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSP 141

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
              + GK IH+  ++   + +  + N++L  Y +CG L     +F  +  R+VVS+ TM+
Sbjct: 142 AELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTML 201

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
           G YA++ + KE + +F +M  ++   P++ T +N+L A ++ S L  GK +H  ++    
Sbjct: 202 GLYAQKAYVKECLGLFGQM-SSEGISPDKVTYINLLDAFTTPSMLDEGKRIHK-LTVEEG 259

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
           L+    VG A++ M V+CGDV  A Q F  +A +D + ++ +I+ LA +G   +A + + 
Sbjct: 260 LNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYY 319

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            M  + V  +  T++++++ACS    ++ G ++   +S        +Q    ++ MY R 
Sbjct: 320 RMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGH-SSDVQIGNALISMYARC 378

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLN--ACRIHRNDEMFDRIRQDLVNKKGVSVG--TF 417
           G L +A      MP + +   W A++   A R  R + M  R+ + +   +GV  G  TF
Sbjct: 379 GDLPKARELFYTMP-KRDLISWNAIIAGYARREDRGEAM--RLYKQM-QSEGVKPGRVTF 434

Query: 418 ALMSNTFAGADRWEDTNKIRDEIRRMGLK 446
             + +  A +  + D   I ++I R G+K
Sbjct: 435 LHLLSACANSSAYADGKMIHEDILRSGIK 463


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  310 bits (794), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 157/448 (35%), Positives = 267/448 (59%), Gaps = 6/448 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    + AC  +H       +H + +  G + +  + N+LL  Y    D  S ++IF ++
Sbjct: 87  TLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRNM 146

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMF--CGID-VKPNANTLVSVLSACSSLVSHKLGK 128
              +VVSWT +I+  ++ G   +   +F   G++ ++P+   + S L A +   S K GK
Sbjct: 147 EQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGK 206

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
           ++H +++RN  E  + + NA+++ Y++CG +    ++F  + K++ +SW T+IGGY+   
Sbjct: 207 SVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSN 266

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
              EA ++F EM    +  PN  T+  +L A +S+S+L  G+ +H+Y   R  L   N V
Sbjct: 267 LANEAFTLFNEM--LLQLRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLE-DNFV 323

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            NA+++MYVKCG + +A ++F+ML  K+ ISW+ +I+G  M+G GR A+ LF  M  + +
Sbjct: 324 ANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGI 383

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD  +F A++ ACSH GL D+G   F AM   + I P+++HYAC+VD+    G L+EA 
Sbjct: 384 QPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAY 443

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
            FI  MPIE + S+W +LL  CRIHRN ++ +++ + +   +  + G + L++N +A A+
Sbjct: 444 EFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFELEPENTGYYVLLANIYAEAE 503

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           RWE   K+++++   GL++ TGCSWIEV
Sbjct: 504 RWEAVRKLKNKVGGRGLRENTGCSWIEV 531



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 160/306 (52%), Gaps = 6/306 (1%)

Query: 29  ALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
            L +H ++++YG      + N+L+ FY     I  A  +F+ +   D++SW +II G + 
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 89  CGFHKEAIDMFCGIDVKP---NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
            G + +A+++F  + ++    ++ TL+SV+ AC       +G  +H +S+R    +   L
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSL 122

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            NA+LD Y  C    S   +F  M ++NVVSWT MI  Y   G   +   +FQEM   + 
Sbjct: 123 GNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEM-GLEG 181

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
             P+   + + L A +   +L  GK VH Y + R  +     V NA++ MYVKCG +  A
Sbjct: 182 IRPDVFAITSALDAFAGNESLKHGKSVHGY-AIRNGIEEVLPVANALMEMYVKCGYMEEA 240

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
             +F+ +  KD ISW+T+I G + +    +A  LF+ M++  + P+ VT   ++ A +  
Sbjct: 241 RFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAASL 299

Query: 326 GLVDQG 331
             +++G
Sbjct: 300 SSLERG 305



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 114/213 (53%), Gaps = 3/213 (1%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +  T AL A +     +    +H + I  G    + + N+L+  YV    +  A  IF+ 
Sbjct: 187 FAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDH 246

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCG--IDVKPNANTLVSVLSACSSLVSHKLGK 128
           V   D +SW T+I G S+     EA  +F    + ++PNA T+  +L A +SL S + G+
Sbjct: 247 VTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQLRPNAVTMACILPAAASLSSLERGR 306

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +HA+++R     +  + NA++D Y++CG+L     LF  +  +N++SWT MI GY   G
Sbjct: 307 EMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHG 366

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221
             ++A+++F++M K    +P+  +   +L ACS
Sbjct: 367 RGRDAIALFEQM-KGSGIQPDAGSFSAILYACS 398



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 62/114 (54%), Gaps = 3/114 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L A +     ++  E+HA+ +  G+L D F+ N+L+  YV    +  A ++F
Sbjct: 285 NAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLF 344

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACS 119
           + +   +++SWT +I+G    G  ++AI +F    G  ++P+A +  ++L ACS
Sbjct: 345 DMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACS 398


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 165/454 (36%), Positives = 265/454 (58%), Gaps = 11/454 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YTF    K+C  +    +  +IH H  + G   D + QN+L++ Y     + SA ++F
Sbjct: 87  DRYTFPSLFKSCRNS---SEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVF 143

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSH 124
           + +    VVSW T+I   ++     EA+ +F  +    +VKPN  TLV+VL+AC+     
Sbjct: 144 DKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDL 203

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
            + K IH +   +    +++L+  ++D Y +CG +     LF K  ++N+ SW  MI G+
Sbjct: 204 AMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGH 263

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST-RYDLS 243
            E    +EA+ +F+EM+ TK  + ++ T+ ++L AC+ + AL  GK++H+YI   R D+ 
Sbjct: 264 VEDSNYEEALLLFREMQ-TKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVD 322

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           V+  +G A+++MY KCG +  AIQVF+ +  KD ++W+ +I GLAM G    ALQ F  M
Sbjct: 323 VA--LGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEM 380

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
            I  V PD +TF+ +++ACSH G VD+G+  F +MS  Y I P ++HY  +VD+ GRAG 
Sbjct: 381 HIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGR 440

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           + EAE  I+ MP+  +  V G LL ACRIH N E  +R  + L+       GT+ L+SN 
Sbjct: 441 IAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPYHSGTYVLLSNI 500

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +  + +WE+  + R+ +   G++K  GCS IEV+
Sbjct: 501 YKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVH 534


>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
 gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 167/457 (36%), Positives = 270/457 (59%), Gaps = 7/457 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N++T+     AC            H  V + G   D ++ +SL+  Y    ++  A ++F
Sbjct: 127 NNFTYPFLFIACGNVRGLVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVF 186

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           + +   D+VSW ++ISG SK GF KEAI +F  +     +P+  TLVSVL AC  L    
Sbjct: 187 DEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLG 246

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG+ +    L    E N  + +A++D Y +CG L S   +F  MP ++VV+W  +I GYA
Sbjct: 247 LGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYA 306

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G   EA+ +F  M +     P+  T++ VLSACS+I AL  GK+V ++ S +  L   
Sbjct: 307 QNGASNEAIVLFNGMREAG-PHPDRVTMIEVLSACSTIGALDLGKWVETHASEK-GLQHD 364

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V +A+I+MY KCG +  A++VF  + +K+++SW+ +IS LA +G  ++AL LF  M  
Sbjct: 365 VYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQEALSLFRRMSK 424

Query: 306 N--AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
           +   V P+D+TFI ++SAC H GLVD+G  LF++M+  + +VP+++HY+C+VD+  RAGL
Sbjct: 425 DNGTVQPNDITFIGVLSACVHAGLVDEGRQLFESMNLSFGLVPKVEHYSCMVDLCARAGL 484

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           L EA   I++MP + +  V G+LL AC+  RN ++ +R+ Q  +  +  + G + + S  
Sbjct: 485 LYEAWDLIKKMPGKPDEIVLGSLLGACQRRRNADVGERVIQLFLEMELSNSGNYVISSKI 544

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +A   RW+D+ K+R  +R+ G+ K  GCSWI++   +
Sbjct: 545 YANMRRWDDSAKMRVLMRQCGVSKTPGCSWIDIGAHV 581



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 218/410 (53%), Gaps = 25/410 (6%)

Query: 9   NHYTFTQALKACSLAHPHQKAL-EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           +H T T+ L +       +  L +IHA ++    ++ I   N LL   + +KD+  A  +
Sbjct: 28  HHQTLTEKLLSLIKQCKSKNLLKQIHAQML----INSIPKPNFLLSKIIDLKDLAYASLV 83

Query: 68  FNSVVFPDVVSWTTIISGLS----KCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVS 123
           FN +  P++ ++  ++ GL+    K  F  E       + +K N  T   +  AC ++  
Sbjct: 84  FNQLTKPNIYAFNVMLRGLATTWKKYDFCVELYYKLKSLGLKANNFTYPFLFIACGNVRG 143

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
              GK  H    +   + +  ++++++  Y RCG +     +F +M  R++VSW +MI G
Sbjct: 144 LVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISG 203

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           Y++ GF KEA+ +F EM + +  EP+E TLV+VL AC  +  L  G++V  ++  +  + 
Sbjct: 204 YSKMGFTKEAIGLFMEM-REEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEK-KME 261

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           V++ +G+A+I+MY KCGD+  A +VF+ +  KD ++W+ +I+G A NG   +A+ LF+ M
Sbjct: 262 VNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGM 321

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQH----YACVVDMYG 359
                 PD VT I ++SACS  G +D G    K + T +     +QH     + ++DMY 
Sbjct: 322 REAGPHPDRVTMIEVLSACSTIGALDLG----KWVET-HASEKGLQHDVYVASALIDMYA 376

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDRIRQD 405
           + G L++A      MP + E S W A+++A   H   +    +F R+ +D
Sbjct: 377 KCGSLDDAVRVFESMPHKNEVS-WNAMISALAFHGQAQEALSLFRRMSKD 425


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 162/455 (35%), Positives = 266/455 (58%), Gaps = 5/455 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T+   L AC  +       EIH+ V + G   DI +QN+L+  Y     I  A  +F
Sbjct: 327 NKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVF 386

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           + +V  DV+SWT +I GL+K GF  EA+ ++  +    V+PN  T  S+L+ACSS  + +
Sbjct: 387 DKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALE 446

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ IH   +      +  + N +++ Y  CGS+     +F +M +R++V++  MIGGYA
Sbjct: 447 WGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYA 506

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
                KEA+ +F  +++ +  +P++ T +N+L+AC++  +L + + +H+ +      S +
Sbjct: 507 AHNLGKEALKLFDRLQE-EGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDT 565

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
           + VGNA+++ Y KCG    A  VF  +  ++ ISW+ +I G A +G G+ ALQLF  M +
Sbjct: 566 S-VGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKM 624

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             V PD VTF++L+SACSH GL+++G   F +MS  + I+P ++HY C+VD+ GRAG L+
Sbjct: 625 EGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLD 684

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EAEA I+ MP +A   +WGALL ACRIH N  + +R  +  +     +   +  +S+ +A
Sbjct: 685 EAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYA 744

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            A  W+   K+R  + + G+ K+ G SWI+V   +
Sbjct: 745 AAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKL 779



 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 134/445 (30%), Positives = 234/445 (52%), Gaps = 16/445 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +  T    L +C      +   EIH   ++ G L D+ + N +L+ Y     I  A ++F
Sbjct: 125 DRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVF 184

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           + +    VVSWT  I G + CG  + A ++F  ++   V PN  T +SVL+A SS  + K
Sbjct: 185 DKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALK 244

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GKA+H+  L   +E++  +  A++  Y +CGS   C  +F K+  R++++W TMIGG A
Sbjct: 245 WGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLA 304

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           E G+ +EA  V+ +M++ +   PN+ T V +L+AC + +AL +GK +HS ++ +   +  
Sbjct: 305 EGGYWEEASEVYNQMQR-EGVMPNKITYVILLNACVNSAALHWGKEIHSRVA-KAGFTSD 362

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V NA+I+MY +CG +  A  VF+ +  KD ISW+ +I GLA +G G +AL ++  M  
Sbjct: 363 IGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQ 422

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA-CVVDMYGRAGLL 364
             V P+ VT+ ++++ACS    ++ G  + +    V   +    H    +V+MY   G +
Sbjct: 423 AGVEPNRVTYTSILNACSSPAALEWGRRIHQ--QVVEAGLATDAHVGNTLVNMYSMCGSV 480

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQDLVNKKGVSVGTFALM 420
           ++A      M I+ +   + A++     H       ++FDR++++ +    V   T+  M
Sbjct: 481 KDARQVFDRM-IQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKV---TYINM 536

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGL 445
            N  A +   E   +I   +R+ G 
Sbjct: 537 LNACANSGSLEWAREIHTLVRKGGF 561



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/386 (29%), Positives = 203/386 (52%), Gaps = 9/386 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N   + + LK C          ++H H+I++  + D +  N+L++ Y+    I  A Q++
Sbjct: 22  NSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVW 81

Query: 69  NSVVFPD--VVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVS 123
             + + +  V SW  ++ G  + G+ ++A+ +   +    + P+  T++S LS+C S  +
Sbjct: 82  KKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGA 141

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            + G+ IH  +++     ++ + N IL+ Y +CGS+     +F KM K++VVSWT  IGG
Sbjct: 142 LEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGG 201

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           YA+ G  + A  +FQ+ME+ +   PN  T ++VL+A SS +AL +GK VHS I      S
Sbjct: 202 YADCGRSETAFEIFQKMEQ-EGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHES 260

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
               VG A++ MY KCG      QVF  L  +D I+W+T+I GLA  G   +A ++++ M
Sbjct: 261 -DTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQM 319

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
               V P+ +T++ L++AC +   +  G  +   ++        +     ++ MY R G 
Sbjct: 320 QREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKA-GFTSDIGVQNALISMYSRCGS 378

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNA 389
           +++A     +M +  +   W A++  
Sbjct: 379 IKDARLVFDKM-VRKDVISWTAMIGG 403


>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 657

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 171/483 (35%), Positives = 269/483 (55%), Gaps = 36/483 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +T    LKAC+     + AL  H  V++ G +  IF+ N+LLHF+ +   +  + + F
Sbjct: 113 NEFTLPFVLKACTTVRAVEHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFF 172

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
             +   +VVSW T+I G ++ G   EA  +F  +    +  +  TLVS+L ACSS  + +
Sbjct: 173 GEMADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLE 232

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSL-------------------------A 160
           +G+ +H H L + +  + IL NA+LD Y +CG L                         A
Sbjct: 233 VGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQA 292

Query: 161 SCGYL------FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
             G +      F +MP+RN+VSW  MI  Y + G   E + ++  M ++    P+E TL 
Sbjct: 293 KHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRM-RSLGITPDEFTLA 351

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
            VLSAC     L+ GK +H Y+   ++     L+ N++++MY +CG V  AI +F  +  
Sbjct: 352 GVLSACGQNGDLASGKMIHCYVRDNFNDPGVTLL-NSLLDMYARCGQVDTAIGLFTEMPN 410

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           K+ ISW+ +I  LAM+G  ++ +  F  M+ +A  PD++TF+ L+SACSHGGL++ G   
Sbjct: 411 KNVISWNVIIGALAMHGRAQETVTFFRTMVSDAFSPDEITFVGLLSACSHGGLLEAGEYY 470

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F+AM+ VY + P+++HY C+VD+ GR G L +A   I++M I+ +  VWGALL ACRIH 
Sbjct: 471 FEAMARVYNVEPEVEHYGCMVDLLGRRGHLAKAVNLIKDMSIKPDVVVWGALLGACRIHG 530

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           N E+   + + L+  +G++ G F L+ N F   ++WED  K+R  ++  G KK  G S I
Sbjct: 531 NVEIGKLVIKQLLELEGITGGLFVLICNLFYETNQWEDMKKLRKLMKEQGTKKDMGVSSI 590

Query: 455 EVN 457
           EV 
Sbjct: 591 EVK 593



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 118/420 (28%), Positives = 202/420 (48%), Gaps = 49/420 (11%)

Query: 15  QALKAC-SLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK------DIFSAHQI 67
           + L+ C S+ H  Q    IHAH++ +G      + + L+  Y T+        +  A ++
Sbjct: 15  ELLRQCRSIQHLDQ----IHAHLVVHGFSDVSSVASQLIASYCTLSAGDRDGGLCHARRL 70

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSH 124
           F+ +  PD   + T++   S     +EA+ +  G+    + PN  TL  VL AC+++ + 
Sbjct: 71  FDRIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACTTVRAV 130

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           +   A H   ++      I + NA+L F+   GSL      F +M  RNVVSW TMIGGY
Sbjct: 131 EHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGY 190

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           A+ G   EA ++F EM + +    +  TLV++L ACSS   L  G+ VH ++       V
Sbjct: 191 AQAGEVSEACALFGEM-RHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGS-RV 248

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNG------------- 291
             ++GNA+++MY KCGD+ +A + F+M+  K+ ++W++++   A +G             
Sbjct: 249 DRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMP 308

Query: 292 ----------------CGR--QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI 333
                           CGR  + L L++ M    + PD+ T   ++SAC   G +  G +
Sbjct: 309 ERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLASGKM 368

Query: 334 LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           +   +   +   P +     ++DMY R G ++ A     EMP +   S W  ++ A  +H
Sbjct: 369 IHCYVRDNFND-PGVTLLNSLLDMYARCGQVDTAIGLFTEMPNKNVIS-WNVIIGALAMH 426


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 160/453 (35%), Positives = 259/453 (57%), Gaps = 38/453 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YTFT ALK+C      ++  +IH HV++ G   D+FIQN+L+H Y +   I  A  + 
Sbjct: 107 DKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLL 166

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
           + ++  DVVSW  ++S  ++ G     +++ C                            
Sbjct: 167 DRMLERDVVSWNALLSAYAERGL----MELAC---------------------------- 194

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
               H    + E N+   N ++  Y+  G L     +F + P +NVVSW  MI GY+  G
Sbjct: 195 ----HLFDEMTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAG 250

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
              E + +F++M+     +P+  TLV+VLSAC+ + ALS G++VH+YI  +  +S+   V
Sbjct: 251 RFSEVLVLFEDMQHAG-VKPDNCTLVSVLSACAHVGALSQGEWVHAYID-KNGISIDGFV 308

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
             A+++MY KCG +  A++VFN    KD  +W+++ISGL+ +G G+ ALQ+FS M++   
Sbjct: 309 ATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGF 368

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            P++VTF+ ++SACS  GL+D+G  +F  M  V+ I P ++HY C+VD+ GR GLLEEAE
Sbjct: 369 KPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAE 428

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
             +++MP +    VW +LL ACR H N E+ +R+ Q L+        +F  +SN +A   
Sbjct: 429 ELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMG 488

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           RW+D  ++R ++R  G++K  GCS IEV+ +++
Sbjct: 489 RWKDVMEVRQKMRAQGVRKDPGCSMIEVDGTVY 521


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 171/459 (37%), Positives = 267/459 (58%), Gaps = 13/459 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +TF   LKA S    ++   + +AH++++G   D F+QNSL+  +     +  + ++F
Sbjct: 103 DRHTFPLLLKAFSKLR-NENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLF 161

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
                 DVVSWT +I+G  + G   EA++ F  +    V+ +  T+VSVL A + L    
Sbjct: 162 IETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVW 221

Query: 126 LGKAIHAHSLRNLNENNIILD----NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
            G+ +H   + +     +I D    +A++D Y +CG       +F +MP RN+VSW  +I
Sbjct: 222 FGRWVHGFYVES---GRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALI 278

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
            GY +    KEA+ VFQEM   +  EPN++T+ + L+AC+ + +L  G+++H Y+  R  
Sbjct: 279 AGYVQCNRYKEALKVFQEM-IIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVD-RSK 336

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
           L +++ +G A+++MY KCG V  A+ VF  L  KD   W+ +I+GLAM G    +L LFS
Sbjct: 337 LGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFS 396

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            MI + V P+ VTF+ ++SAC+HGGLVD+GL LF+ M   Y + P + HY C+VD+ GRA
Sbjct: 397 QMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRA 456

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           G LEEA  FI  MP+E    VWGAL + C IH+  E+ + I   L+  +    G + L++
Sbjct: 457 GRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLA 516

Query: 422 NTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           N ++   +WE    +R  ++  G+ K  GCSWIEVN  I
Sbjct: 517 NLYSRCQKWEAAANVRRLMKGKGVDKSPGCSWIEVNGVI 555



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 192/386 (49%), Gaps = 15/386 (3%)

Query: 36  VIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEA 95
           +I  G  H  F  + +L      KD+     +F+ +  P +  W TII G S     +  
Sbjct: 31  LITSGLAHHTFFLSDILR--SATKDLGYTLLLFDRLATPYIFLWNTIIRGFSASSQPQMV 88

Query: 96  IDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDF 152
           +  +  +    V P+ +T   +L A S L +    +  +AH ++   + +  + N+++  
Sbjct: 89  LVAYSRLRNHGVIPDRHTFPLLLKAFSKLRNENPFQ-FYAHIVKFGLDFDAFVQNSLVSA 147

Query: 153 YIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEAT 212
           +  CG +     LF++  K++VVSWT +I G    G   EA+  F EM ++   E +E T
Sbjct: 148 FAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEM-RSSGVEVDEVT 206

Query: 213 LVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 272
           +V+VL A + +  + FG++VH +      +     VG+A+++MY KCG    A++VFN +
Sbjct: 207 IVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEM 266

Query: 273 AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL 332
             ++ +SW  +I+G       ++AL++F  MII  + P+  T  + ++AC+  G +DQG 
Sbjct: 267 PTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGR 326

Query: 333 ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI 392
            L + +    ++    +    +VDMY + G ++EA     ++P +  +  W A++N   +
Sbjct: 327 WLHEYVDRS-KLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYP-WTAMINGLAM 384

Query: 393 HRND-----EMFDRIRQDLVNKKGVS 413
            R D      +F ++ +  V   GV+
Sbjct: 385 -RGDALSSLNLFSQMIRSRVQPNGVT 409


>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Glycine max]
          Length = 595

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 158/451 (35%), Positives = 265/451 (58%), Gaps = 9/451 (1%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           YTF   LK+C+      +  + H+  ++ G   DI++QN+L+H Y    D   A ++F  
Sbjct: 110 YTFPAVLKSCAKFSGIGEVRQFHSVSVKTGLWCDIYVQNTLVHVYSICGDNVGAGKVFED 169

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAI 130
           ++  DVVSWT +ISG  K G   EAI +F  ++V+PN  T VS+L AC  L    LGK I
Sbjct: 170 MLVRDVVSWTGLISGYVKTGLFNEAISLFLRMNVEPNVGTFVSILGACGKLGRLNLGKGI 229

Query: 131 HAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFC 190
           H    + L    +++ NA+LD Y++C S+     +F +MP+++++SWT+MIGG  +    
Sbjct: 230 HGLVFKCLYGEELVVCNAVLDMYMKCDSVTDARKMFDEMPEKDIISWTSMIGGLVQCQSP 289

Query: 191 KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS---TRYDLSVSNL 247
           +E++ +F +M+ +   EP+   L +VLSAC+S+  L  G++VH YI     ++D+     
Sbjct: 290 RESLDLFSQMQASG-FEPDGVILTSVLSACASLGLLDCGRWVHEYIDCHRIKWDVH---- 344

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           +G  +++MY KCG + +A ++FN +  K+  +W+  I GLA+NG G++AL+ F  ++ + 
Sbjct: 345 IGTTLVDMYAKCGCIDMAQRIFNGMPSKNIRTWNAYIGGLAINGYGKEALKQFEDLVESG 404

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAM-STVYEIVPQMQHYACVVDMYGRAGLLEE 366
             P++VTF+A+ +AC H GLVD+G   F  M S +Y + P ++HY C+VD+  RAGL+ E
Sbjct: 405 TRPNEVTFLAVFTACCHNGLVDEGRKYFNEMTSPLYNLSPCLEHYGCMVDLLCRAGLVGE 464

Query: 367 AEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAG 426
           A   I+ MP+  +  + GALL++   + N      + + L N +    G + L+SN +A 
Sbjct: 465 AVELIKTMPMPPDVQILGALLSSRNTYGNVGFTQEMLKSLPNVEFQDSGIYVLLSNLYAT 524

Query: 427 ADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
             +W +   +R  +++ G+ K  G S I V+
Sbjct: 525 NKKWAEVRSVRRLMKQKGISKAPGSSIIRVD 555



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 152/303 (50%), Gaps = 9/303 (2%)

Query: 106 PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYL 165
           P+  T  +VL +C+        +  H+ S++     +I + N ++  Y  CG     G +
Sbjct: 107 PDVYTFPAVLKSCAKFSGIGEVRQFHSVSVKTGLWCDIYVQNTLVHVYSICGDNVGAGKV 166

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
           F  M  R+VVSWT +I GY + G   EA+S+F  M      EPN  T V++L AC  +  
Sbjct: 167 FEDMLVRDVVSWTGLISGYVKTGLFNEAISLFLRM----NVEPNVGTFVSILGACGKLGR 222

Query: 226 LSFGKYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVI 284
           L+ GK +H  +    Y   +  +V NAV++MY+KC  V  A ++F+ +  KD ISW+++I
Sbjct: 223 LNLGKGIHGLVFKCLYGEEL--VVCNAVLDMYMKCDSVTDARKMFDEMPEKDIISWTSMI 280

Query: 285 SGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 344
            GL      R++L LFS M  +   PD V   +++SAC+  GL+D G  + + +   + I
Sbjct: 281 GGLVQCQSPRESLDLFSQMQASGFEPDGVILTSVLSACASLGLLDCGRWVHEYIDC-HRI 339

Query: 345 VPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQ 404
              +     +VDMY + G ++ A+     MP       W A +    I+   +   +  +
Sbjct: 340 KWDVHIGTTLVDMYAKCGCIDMAQRIFNGMP-SKNIRTWNAYIGGLAINGYGKEALKQFE 398

Query: 405 DLV 407
           DLV
Sbjct: 399 DLV 401


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 169/492 (34%), Positives = 279/492 (56%), Gaps = 42/492 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N++TF   L +C+     +   E+H+H+I++G   D+F++N+L+H Y    ++  A  +F
Sbjct: 110 NNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLF 169

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           +  +  D+VS+ T+I G ++    + A+ +F  +    + P+  T V++ S CS L    
Sbjct: 170 DESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPN 229

Query: 126 LGKAIHAHSLRNLN--ENNIILDNAILDFYIRCG---------------------SLASC 162
           +GK IHA   +NL   ++NI+L +AI+D Y +CG                     S   C
Sbjct: 230 VGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVC 289

Query: 163 GY-----------LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEA 211
           GY           LF  M +R+V+SWT MI GY++ G C EA+ +F+EME     +P+E 
Sbjct: 290 GYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALG-IKPDEV 348

Query: 212 TLVNVLSACSSISALSFGKYV-HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN 270
           TLV VLSAC+ + A   GK + H YI      + + ++  AV++MY KCG +  A+++F 
Sbjct: 349 TLVAVLSACARLGAFDLGKRLYHQYIENGV-FNQNTILTAAVMDMYAKCGSIDSALEIFR 407

Query: 271 MLA--YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
            +    K    ++++I+GLA +G G  A+ +F  +I   + PD+VTF+ ++ AC H GL+
Sbjct: 408 RVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLI 467

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
           ++G  LF++M   Y I PQM+HY C+VD+ GR G LEEA   +++MP EA   +W ALL+
Sbjct: 468 EEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLS 527

Query: 389 ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
           ACR H N ++ +   Q L+  +      + L+SN  A A++WE+  ++R  +   G++K 
Sbjct: 528 ACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKP 587

Query: 449 TGCSWIEVNPSI 460
            G S+IE+  +I
Sbjct: 588 PGWSYIELGGAI 599



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 111/388 (28%), Positives = 194/388 (50%), Gaps = 41/388 (10%)

Query: 27  QKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV--KD-IFSAHQIFNSVVFPDVVSWTTII 83
           ++ L+IHA  I  G  H IF  + L+ F+  +  KD +  +  +F+ +  P++  W T+I
Sbjct: 23  KQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMI 82

Query: 84  SGLSKCGFHKEAIDMFCGIDVK----PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLN 139
            G S+    +EAI ++  +  K    PN  T   +L++C+ L S + G  +H+H +++  
Sbjct: 83  RGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGF 142

Query: 140 ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQE 199
           E+++ + NA++  Y   G+L     LF +   R++VS+ TMI GYAE    + A+ +F E
Sbjct: 143 ESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGE 202

Query: 200 MEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN-LVGNAVINMYVK 258
           M+ +    P+E T V + S CS ++  + GK +H+ +        SN L+ +A+++MY K
Sbjct: 203 MQNSG-ILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAK 261

Query: 259 --------------------------------CGDVGIAIQVFNMLAYKDKISWSTVISG 286
                                           CG++ +A ++FN +  +D ISW+ +ISG
Sbjct: 262 CGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISG 321

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 346
            +  G   +AL+LF  M    + PD+VT +A++SAC+  G  D G  L+           
Sbjct: 322 YSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQ 381

Query: 347 QMQHYACVVDMYGRAGLLEEAEAFIREM 374
                A V+DMY + G ++ A    R +
Sbjct: 382 NTILTAAVMDMYAKCGSIDSALEIFRRV 409


>gi|357467943|ref|XP_003604256.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505311|gb|AES86453.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 670

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 161/449 (35%), Positives = 262/449 (58%), Gaps = 5/449 (1%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           YT    LK+C+      +  +IH   ++     D+F+QNS +H Y    D   A ++F+ 
Sbjct: 185 YTVPAVLKSCARFSGIAEVKQIHTLAVKTDLWCDMFVQNSFVHVYSICGDTVGASKVFDF 244

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAI 130
           +   DVVSWT +ISG  K G   +A+ +F  +DV PNA T VS+L AC  L    LGK I
Sbjct: 245 MPVRDVVSWTGLISGYMKAGLFNDAVALFLRMDVAPNAATFVSILGACGKLGCLNLGKGI 304

Query: 131 HAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFC 190
           H    +  +   +++ N ++D Y++C S+     LF ++P++++VSWT+MI G  +    
Sbjct: 305 HGLVSKYPHGKELVVSNTLMDMYVKCESVTDAKRLFDEIPEKDIVSWTSMISGLVQYQCP 364

Query: 191 KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS-TRYDLSVSNLVG 249
           +E++ +F EM  +   EP+   L +VLSAC+S+  L +G++VH YI  +R    V   +G
Sbjct: 365 QESLDLFYEMLGSG-FEPDGVILTSVLSACASLGLLDYGRWVHEYIDHSRIKWDVH--IG 421

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
            ++I+MY KCG + +A Q+FN+L  K+  +W+  I GLA+NG G++AL+ F  ++ +   
Sbjct: 422 TSLIDMYAKCGCIEMAQQMFNLLPSKNIRTWNAYIGGLAINGHGQEALKQFGYLVESGTR 481

Query: 310 PDDVTFIALISACSHGGLVDQGLILFKAM-STVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
           P+++TF+A+ SAC H GLVD+G   FK M S  Y + P ++HY C+VD+  RA L+EEA 
Sbjct: 482 PNEITFLAVFSACCHSGLVDEGRSYFKQMTSPPYNLSPWLEHYGCMVDLLCRAELVEEAM 541

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
             I +MP+  +  + GALL+A   + N E+   + + + N +    G + L+SN +A   
Sbjct: 542 ELINKMPMPPDVQIIGALLSASSTYGNVELTPEMLKTVRNFECQESGVYVLLSNWYANNK 601

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +W +   +R  ++  G+ K  G S I V+
Sbjct: 602 KWAEVRSVRRLMKEKGISKAPGSSLIRVD 630



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 154/297 (51%), Gaps = 9/297 (3%)

Query: 82  IISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNL 138
           IISG     F   AI ++    G    P+  T+ +VL +C+        K IH  +++  
Sbjct: 155 IISGYGAGNFPWAAIRIYRWVVGNGFVPDVYTVPAVLKSCARFSGIAEVKQIHTLAVKTD 214

Query: 139 NENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQ 198
              ++ + N+ +  Y  CG       +F  MP R+VVSWT +I GY + G   +AV++F 
Sbjct: 215 LWCDMFVQNSFVHVYSICGDTVGASKVFDFMPVRDVVSWTGLISGYMKAGLFNDAVALFL 274

Query: 199 EMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVK 258
            M    +  PN AT V++L AC  +  L+ GK +H  +S +Y      +V N +++MYVK
Sbjct: 275 RM----DVAPNAATFVSILGACGKLGCLNLGKGIHGLVS-KYPHGKELVVSNTLMDMYVK 329

Query: 259 CGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIAL 318
           C  V  A ++F+ +  KD +SW+++ISGL    C +++L LF  M+ +   PD V   ++
Sbjct: 330 CESVTDAKRLFDEIPEKDIVSWTSMISGLVQYQCPQESLDLFYEMLGSGFEPDGVILTSV 389

Query: 319 ISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP 375
           +SAC+  GL+D G  + + +     I   +     ++DMY + G +E A+     +P
Sbjct: 390 LSACASLGLLDYGRWVHEYIDHS-RIKWDVHIGTSLIDMYAKCGCIEMAQQMFNLLP 445


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 162/465 (34%), Positives = 273/465 (58%), Gaps = 9/465 (1%)

Query: 3   SCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIF 62
           S P S       Q +     +    + L IHA +I  GH  D F+   LL        I 
Sbjct: 22  SNPKSLKSLDQKQIISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAID 81

Query: 63  SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 119
            A +IF     P+V  +T +I G    G + +AI ++  +    + P+   + S+L AC 
Sbjct: 82  YASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACG 141

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK----RNVV 175
           S ++ + G+ +H+ +L+    +N ++   I++ Y +CG L     +F +MP+    ++ V
Sbjct: 142 SQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTV 201

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
            WT MI G+        A+  F+ M+  +   PNE T+V VLSACS + AL  G++VHSY
Sbjct: 202 CWTAMIDGFVRNEEMNRALEAFRGMQ-GENVRPNEFTIVCVLSACSQLGALEIGRWVHSY 260

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
           +  ++++ ++  VGNA+INMY +CG +  A  VF+ +  +D I+++T+ISGL+MNG  RQ
Sbjct: 261 MR-KFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQ 319

Query: 296 ALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVV 355
           A++LF +MI   + P +VTF+ +++ACSHGGLVD G  +F +M+  Y + PQ++HY C+V
Sbjct: 320 AIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMV 379

Query: 356 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVG 415
           D+ GR G LEEA   IR M +  +  + G LL+AC++H+N E+ +++ + L ++     G
Sbjct: 380 DLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSG 439

Query: 416 TFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           T+ L+S+ +A + +W++  ++R +++  G++K+ GCS IEVN  I
Sbjct: 440 TYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEI 484


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 165/457 (36%), Positives = 265/457 (57%), Gaps = 7/457 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N+ T+     ACS     +     H  VI  G   D  + +SL+  Y     +  A ++F
Sbjct: 126 NNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVF 185

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           + +   D+VSW ++ISG SK     EA+ +F  +     +PN  +LVSVL AC  L   K
Sbjct: 186 DEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLK 245

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG  +    + N    N  + +A++  Y +CG L S   +F  M K++ V+W  MI GYA
Sbjct: 246 LGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYA 305

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G  +EA+ +FQ+M  +  A P++ TL+ +LSAC+SI AL  GK V  Y S R      
Sbjct: 306 QNGMSEEAIKLFQDMRMSSTA-PDQITLIGILSACASIGALDLGKQVEIYASER-GFQDD 363

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             VG A+++MY KCG +  A +VF  +  K+++SW+ +IS LA +G  ++AL LF  M+ 
Sbjct: 364 VYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMN 423

Query: 306 NA--VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
               V P+D+TF+ ++SAC H GLVD+G  LF  MS+ + +VP+++HY+C+VD++ RAG 
Sbjct: 424 EGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGH 483

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           LEEA  F+  MP + +  + GALL AC+  +N ++ +R+ + L+  +  + G + + S  
Sbjct: 484 LEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKL 543

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +A   RW+D+ ++R  +++ G+ K  GCSWI++N  +
Sbjct: 544 YANLRRWDDSARMRMLMKQKGVSKTPGCSWIDINSQL 580



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 114/390 (29%), Positives = 205/390 (52%), Gaps = 20/390 (5%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS--- 87
           +IHA ++     + I   NS L+    +KD   A   F++++ P   S+  +I GLS   
Sbjct: 50  QIHAQLLT----NSIHKPNSFLYKIADLKDFAYASVFFSNILDPTEYSFNVMIRGLSTAW 105

Query: 88  -KCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
            K     E       + +KPN  T   +  ACS+L++ + G+  H   +R   + +  + 
Sbjct: 106 NKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVS 165

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           ++++  Y RCG +     +F ++ ++++VSW +MI GY++     EAV +F+EM +    
Sbjct: 166 HSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAG-F 224

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
           +PNE +LV+VL AC  +  L  G +V  ++     ++++  +G+A+I+MY KCGD+  A 
Sbjct: 225 QPNEMSLVSVLGACGELGDLKLGTWVEEFV-VENKMTLNYFMGSALIHMYGKCGDLVSAR 283

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
           ++F+ +  KDK++W+ +I+G A NG   +A++LF  M +++  PD +T I ++SAC+  G
Sbjct: 284 RIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIG 343

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHYACV----VDMYGRAGLLEEAEAFIREMPIEAEWSV 382
            +D G         +Y      Q    V    VDMY + G L+ A      MP + E S 
Sbjct: 344 ALDLG-----KQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVS- 397

Query: 383 WGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           W A+++A   H   +    + + ++N+ G 
Sbjct: 398 WNAMISALAFHGQAQEALALFKSMMNEGGT 427


>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
          Length = 644

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 171/486 (35%), Positives = 271/486 (55%), Gaps = 36/486 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +T    LKAC+     +  +  H  V++ G +  +F+ N+LLH Y +   +  + + F
Sbjct: 109 NEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFF 168

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHK 125
           + +V  +VVSW ++I+G ++ G  +EA  +F G+  +    +  TLVS+L ACS+  + +
Sbjct: 169 DEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLE 228

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK +H+H L      ++IL NA++D Y +CG L      F  MP +N VSWT+M+   A
Sbjct: 229 FGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALA 288

Query: 186 ER-------------------------------GFCKEAVSVFQEMEKTKEAEPNEATLV 214
           +R                               G   EA+ ++  M+    A P+E TL 
Sbjct: 289 KRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLA-PDEFTLA 347

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
            VLSAC  +  L+ GK +H  I   +      L  N++++MY +CG V  AI +F+ +  
Sbjct: 348 AVLSACGQLGDLASGKMIHDCIRDNFHNPGVALF-NSLLDMYARCGQVDTAISLFSEMPS 406

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           K+ ISW+ +I  LAM+G  + AL  F  M+ +A  PD++TF+AL+SAC+HGGL++ G   
Sbjct: 407 KNVISWNAIIGALAMHGRAQDALMFFRSMVFDAFPPDEITFVALLSACNHGGLLEAGQYY 466

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F+AM  VY + P ++HYAC+VD+ GR G L +A   I++MP+  +  VWGALL ACRIH 
Sbjct: 467 FQAMRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHG 526

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           + ++  ++ + L+  +G+S G F L+SN      +WED  ++R  +R  G+KK  G S I
Sbjct: 527 HIQIGKQVIKQLLELEGMSGGLFVLISNMLYETHQWEDMKRLRKLMREWGMKKNMGVSSI 586

Query: 455 EVNPSI 460
           E N +I
Sbjct: 587 ETNSNI 592



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 118/416 (28%), Positives = 208/416 (50%), Gaps = 47/416 (11%)

Query: 15  QALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK---DIFSAHQIFNSV 71
           + L+ C   H   +  ++HAH++ +G + D+  Q  +L  Y  +     ++ A Q+F+ +
Sbjct: 17  ELLRRCGSVH---RLNQLHAHLVVHG-VDDVTSQ--ILASYCALPAGGGVWYARQLFDRI 70

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
             PD   + ++I         +EA+ +  G+    + PN  TL  +L AC+ + + +   
Sbjct: 71  PDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVM 130

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
             H   ++      + + NA+L  Y   GSL      F +M  RNVVSW +MI GYA+ G
Sbjct: 131 VTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAG 190

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
             +EA S+F+ M + +    +E TLV++L ACS+   L FGK VHS++  R    +  ++
Sbjct: 191 NTREACSLFEGMRR-QGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVR-GCRIDLIL 248

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGL--------------------- 287
            NA+++MY KCGD+ +A   F+M+ +K+ +SW++++  L                     
Sbjct: 249 ANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSI 308

Query: 288 ----AMNGC----GR--QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKA 337
               AM  C    GR  +AL L++ M +  + PD+ T  A++SAC   G +  G ++   
Sbjct: 309 ISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDC 368

Query: 338 MSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           +   +   P +  +  ++DMY R G ++ A +   EMP +   S W A++ A  +H
Sbjct: 369 IRDNFH-NPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVIS-WNAIIGALAMH 422



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 132/284 (46%), Gaps = 13/284 (4%)

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224
           LF ++P  +   + ++I  Y      +EA+ + + M + +   PNE TL  +L AC+ + 
Sbjct: 66  LFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIR-RGILPNEFTLPFLLKACARVQ 124

Query: 225 ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVI 284
           A       H  +  +        VGNA+++ Y   G +G + + F+ +  ++ +SW+++I
Sbjct: 125 AWEHVMVTHGVV-VKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMI 183

Query: 285 SGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 344
           +G A  G  R+A  LF  M    +  D+ T ++L+ ACS  G ++ G ++   +  V   
Sbjct: 184 NGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHL-LVRGC 242

Query: 345 VPQMQHYACVVDMYGRAGLLEEAEAFIREMPIE--AEW-SVWGALLNACRIHRNDEMFDR 401
              +     +VDMYG+ G L  A      MP +    W S+  AL     I    + F++
Sbjct: 243 RIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQ 302

Query: 402 IRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445
           I +        S+ ++  M + +    R+ +   + + ++ +GL
Sbjct: 303 IPEK-------SIISWNAMISCYVQGGRFHEALDLYNRMKLLGL 339


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 154/459 (33%), Positives = 273/459 (59%), Gaps = 6/459 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML+     +  T    L AC+          +HA+ ++ G    +   N+LL  Y    +
Sbjct: 250 MLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGN 309

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           +  A+++F  +    +VSWT+II+   + G H EAI +F  +    ++P+   + SV+ A
Sbjct: 310 LNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHA 369

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C+   S   G+ +H H  +N   +N+ + NA+++ Y +CGS+     +F ++P +N+VSW
Sbjct: 370 CACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSW 429

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
            TMIGGY++     EA+ +F +M+K  + +P++ T+  VL AC+ ++AL  G+ +H +I 
Sbjct: 430 NTMIGGYSQNSLPNEALQLFLDMQK--QLKPDDVTMACVLPACAGLAALEKGREIHGHIL 487

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            +   S  + V  A+++MYVKCG + +A Q+F+M+  KD I W+ +I+G  M+G G++A+
Sbjct: 488 RKGYFSDLH-VACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAI 546

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
             F  M +  + P++ +F +++ AC+H GL+ +G  LF +M +   I P+++HYAC+VD+
Sbjct: 547 STFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDL 606

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTF 417
             R+G L  A  FI  MPI+ + ++WGALL+ CRIH + E+ +++ + +   +  +   +
Sbjct: 607 LIRSGNLSRAYKFIETMPIKPDAAIWGALLSGCRIHHDVELAEKVAEHIFELEPENTRYY 666

Query: 418 ALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
            L++N +A A++WE+  KI+  I + GLK   GCSWIEV
Sbjct: 667 VLLANVYAEAEKWEEVKKIQRRISKGGLKNDQGCSWIEV 705



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/396 (31%), Positives = 219/396 (55%), Gaps = 24/396 (6%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YTFT  LK  + +   ++   +H +V++ G      + NSL+  Y    ++ SA  +F
Sbjct: 157 DSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILF 216

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLVS 123
           + +   DVVSW ++ISG +  GF +  ++ F      G+DV  ++ TLV+VL AC+++ +
Sbjct: 217 DELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDV--DSATLVNVLVACANVGN 274

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
             LG+A+HA+ ++      ++ +N +LD Y +CG+L     +FVKM +  +VSWT++I  
Sbjct: 275 LTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAA 334

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           +   G   EA+ +F EM+ +K   P+   + +V+ AC+  ++L  G+ VH++I  + ++ 
Sbjct: 335 HVREGLHYEAIGLFDEMQ-SKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIK-KNNMG 392

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
            +  V NA++NMY KCG +  A  +F+ L  K+ +SW+T+I G + N    +ALQLF L 
Sbjct: 393 SNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLF-LD 451

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGL-----ILFKAMSTVYEIVPQMQHYAC-VVDM 357
           +   + PDDVT   ++ AC+    +++G      IL K   +         H AC +VDM
Sbjct: 452 MQKQLKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDL-------HVACALVDM 504

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           Y + GLL  A+     +P + +  +W  ++    +H
Sbjct: 505 YVKCGLLVLAQQLFDMIP-KKDMILWTVMIAGYGMH 539



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 181/370 (48%), Gaps = 8/370 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T+   L+ C+     +    +H+ +   G   D  +   L+  YV   D+    +IF+ +
Sbjct: 59  TYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGI 118

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
           +   +  W  ++S  +K G ++E++ +F  +    ++ ++ T   VL   ++    +  K
Sbjct: 119 LNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECK 178

Query: 129 AIHAHSLR-NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
            +H + L+      N ++ N+++  Y +CG + S   LF ++  R+VVSW +MI G    
Sbjct: 179 RVHGYVLKLGFGSYNAVV-NSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMN 237

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           GF +  +  F +M      + + ATLVNVL AC+++  L+ G+ +H+Y   +   S   +
Sbjct: 238 GFSRNGLEFFIQMLNLG-VDVDSATLVNVLVACANVGNLTLGRALHAY-GVKAGFSGGVM 295

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
             N +++MY KCG++  A +VF  +     +SW+++I+     G   +A+ LF  M    
Sbjct: 296 FNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKG 355

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           + PD     +++ AC+    +D+G  +   +     +   +     +++MY + G +EEA
Sbjct: 356 LRPDIYAVTSVVHACACSNSLDKGREVHNHIKK-NNMGSNLPVSNALMNMYAKCGSMEEA 414

Query: 368 EAFIREMPIE 377
                ++P++
Sbjct: 415 NLIFSQLPVK 424



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 129/265 (48%), Gaps = 4/265 (1%)

Query: 109 NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168
           NT  SVL  C+ L S + GK +H+    N    + +L   ++  Y+ CG L     +F  
Sbjct: 58  NTYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDG 117

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           +    +  W  ++  YA+ G  +E+V +F++M++      +  T   VL   ++ + +  
Sbjct: 118 ILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELG-IRGDSYTFTCVLKGFAASAKVRE 176

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
            K VH Y+  +      N V N++I  Y KCG+V  A  +F+ L+ +D +SW+++ISG  
Sbjct: 177 CKRVHGYV-LKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCT 235

Query: 289 MNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQM 348
           MNG  R  L+ F  M+   V  D  T + ++ AC++ G +  G  L  A          +
Sbjct: 236 MNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRAL-HAYGVKAGFSGGV 294

Query: 349 QHYACVVDMYGRAGLLEEA-EAFIR 372
                ++DMY + G L  A E F++
Sbjct: 295 MFNNTLLDMYSKCGNLNGANEVFVK 319


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 165/457 (36%), Positives = 265/457 (57%), Gaps = 7/457 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N+ T+     ACS     +     H  VI  G   D  + +SL+  Y     +  A ++F
Sbjct: 126 NNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVF 185

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           + +   D+VSW ++ISG SK     EA+ +F  +     +PN  +LVSVL AC  L   K
Sbjct: 186 DEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLK 245

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG  +    + N    N  + +A++  Y +CG L S   +F  M K++ V+W  MI GYA
Sbjct: 246 LGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYA 305

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G  +EA+ +FQ+M  +  A P++ TL+ +LSAC+SI AL  GK V  Y S R      
Sbjct: 306 QNGMSEEAIKLFQDMRMSSTA-PDQITLIGILSACASIGALDLGKQVEIYASER-GFQDD 363

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             VG A+++MY KCG +  A +VF  +  K+++SW+ +IS LA +G  ++AL LF  M+ 
Sbjct: 364 VYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMN 423

Query: 306 NA--VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
               V P+D+TF+ ++SAC H GLVD+G  LF  MS+ + +VP+++HY+C+VD++ RAG 
Sbjct: 424 EGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGH 483

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           LEEA  F+  MP + +  + GALL AC+  +N ++ +R+ + L+  +  + G + + S  
Sbjct: 484 LEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKL 543

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +A   RW+D+ ++R  +++ G+ K  GCSWI++N  +
Sbjct: 544 YANLRRWDDSARMRMLMKQKGVSKTPGCSWIDINSQL 580



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 114/390 (29%), Positives = 205/390 (52%), Gaps = 20/390 (5%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS--- 87
           +IHA ++     + I   NS L+    +KD   A   F++++ P   S+  +I GLS   
Sbjct: 50  QIHAQLLT----NSIHKPNSFLYKIADLKDFAYASVFFSNILDPTEYSFNVMIRGLSTAW 105

Query: 88  -KCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
            K     E       + +KPN  T   +  ACS+L++ + G+  H   +R   + +  + 
Sbjct: 106 NKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVS 165

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           ++++  Y RCG +     +F ++ ++++VSW +MI GY++     EAV +F+EM +    
Sbjct: 166 HSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAG-F 224

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
           +PNE +LV+VL AC  +  L  G +V  ++     ++++  +G+A+I+MY KCGD+  A 
Sbjct: 225 QPNEMSLVSVLGACGELGDLKLGTWVEEFV-VENKMTLNYFMGSALIHMYGKCGDLVSAR 283

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
           ++F+ +  KDK++W+ +I+G A NG   +A++LF  M +++  PD +T I ++SAC+  G
Sbjct: 284 RIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIG 343

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHYACV----VDMYGRAGLLEEAEAFIREMPIEAEWSV 382
            +D G         +Y      Q    V    VDMY + G L+ A      MP + E S 
Sbjct: 344 ALDLG-----KQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVS- 397

Query: 383 WGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           W A+++A   H   +    + + ++N+ G 
Sbjct: 398 WNAMISALAFHGQAQEALALFKSMMNEGGT 427


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 159/436 (36%), Positives = 264/436 (60%), Gaps = 9/436 (2%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           ++HA V   G +HD+ + N LL+     KD+ +AH +FN +   D VSW+ +I G  K G
Sbjct: 21  QVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKNG 80

Query: 91  FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRN-LNENNIILD 146
            ++     F  +     KP+  +L  V+ AC   +   +G+ IH+  L+N L+ +N +  
Sbjct: 81  DYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNFVC- 139

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           + ++D Y +CG + +   LF +MPK+++V+ T MI GYAE G   E+  +F +M +    
Sbjct: 140 STLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFV 199

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIA 265
            P++  +V +++AC+ + A++  + VH Y+ + RY L V   +G A+I+MY KCG +  +
Sbjct: 200 -PDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVE--LGTAMIDMYAKCGSIDSS 256

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
            ++F+ +  K+ ISWS +I     +G GR+AL+LF +M+ + + P+ +TFI+L+ ACSH 
Sbjct: 257 REIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYACSHA 316

Query: 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 385
           GLVD GL LF  MS  Y + P ++HY C+VD+ GRAG L++A   I  M +E +  +W A
Sbjct: 317 GLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVEKDEGIWCA 376

Query: 386 LLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445
            L ACRIHR  ++ ++  + L++ +  + G + L+SN +A A RW+D  KIR+ + +  L
Sbjct: 377 FLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGRWKDVAKIRNLMAKRRL 436

Query: 446 KKKTGCSWIEVNPSIF 461
           KK  G +WIEV+  I+
Sbjct: 437 KKIPGYTWIEVDNIIY 452



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 143/288 (49%), Gaps = 9/288 (3%)

Query: 107 NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLF 166
           + +  +S L  C ++   K    +HA        +++I+ N +L    +   L +   LF
Sbjct: 2   DPDFFISTLFKCRNIFQIK---QVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLF 58

Query: 167 VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 226
            KM +R+ VSW+ MIGG+ + G  +     F+E+ +   ++P+  +L  V+ AC     L
Sbjct: 59  NKMEERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAG-SKPDNFSLPFVIKACRDTMGL 117

Query: 227 SFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
             G+ +HS +  +  L + N V + +++MY KCG +  A Q+F+ +  KD ++ + +I+G
Sbjct: 118 IMGRLIHSTV-LKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAG 176

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM-STVYEIV 345
            A  G   ++  LF  M  +   PD V  + +++AC+  G +++  ++   + +  Y + 
Sbjct: 177 YAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLD 236

Query: 346 PQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
            ++     ++DMY + G ++ +      M  +   S W A++ A   H
Sbjct: 237 VELG--TAMIDMYAKCGSIDSSREIFDRMEQKNVIS-WSAMIGAYGYH 281



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 85/207 (41%), Gaps = 37/207 (17%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           + AC+      KA  +H +V    +  D+ +  +++  Y     I S+ +IF+ +   +V
Sbjct: 209 VNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQKNV 268

Query: 77  VSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAH 133
           +SW+ +I      G  +EA+++F       + PN  T +S+L ACS           HA 
Sbjct: 269 ISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYACS-----------HA- 316

Query: 134 SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
                          ++D  ++  SL S  Y      + +V  +T M+      G   +A
Sbjct: 317 --------------GLVDDGLQLFSLMSVSYGV----RPDVKHYTCMVDLLGRAGRLDQA 358

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSAC 220
           + + + M    E E +E      L AC
Sbjct: 359 LRLIENM----EVEKDEGIWCAFLGAC 381


>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1288

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 174/485 (35%), Positives = 274/485 (56%), Gaps = 37/485 (7%)

Query: 9    NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
            N+ T+   LKAC+    +     +HA V++ G   D+F+ N+L+H Y    ++  A ++F
Sbjct: 795  NNLTYPFLLKACARI-SNVSCTTVHARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVF 853

Query: 69   NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
            + +   D+VSW ++I G  +C  + E + +F  +   DVK +A T+V V+ AC+ L    
Sbjct: 854  DEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLGEWG 913

Query: 126  LGKAIHAHSLRNLNENNIILDNAILDFYIR------------------------------ 155
            +  A+  +   N  E ++ L N ++D Y R                              
Sbjct: 914  VVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDRMRDRNMVSWNAMIMGYG 973

Query: 156  -CGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
              G+L +   LF  MP R+V+SWT+MI  Y++ G   +AV +FQEM  TK  +P+E T+ 
Sbjct: 974  KAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTK-VKPDEITVA 1032

Query: 215  NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
            +VLSAC+ I AL  G+ VH YI  +YD++    VGNA+I+MY KCG V   + VF  +  
Sbjct: 1033 SVLSACAHIGALDVGEAVHEYIR-KYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGK 1091

Query: 275  KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
            +D +SW++VI+GLA+NG    AL LFSLM+   V P   TF+ ++ AC+H G+VD+GL  
Sbjct: 1092 RDSVSWTSVIAGLAVNGSADSALNLFSLMLREGVRPTHGTFVGVLLACAHAGVVDKGLEY 1151

Query: 335  FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
            F++M  VY + P+M+HY CVVD+  R+G L  A  FI+ MP++ +  VW  LL+A ++H 
Sbjct: 1152 FESMERVYGLTPEMKHYGCVVDLLSRSGNLGRAYEFIKRMPMDPDVVVWRILLSASQVHG 1211

Query: 395  NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
            N  + +   + L+     + G + L SNT+AG++RWED  K+R  +    + K +  S +
Sbjct: 1212 NLHLAEIATKKLLETDPSNSGNYILSSNTYAGSNRWEDVIKMRRLMEESNVHKPSASSSV 1271

Query: 455  EVNPS 459
            E+N S
Sbjct: 1272 EINDS 1276


>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 170/483 (35%), Positives = 274/483 (56%), Gaps = 36/483 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N+ T     KAC+         +IH H ++ G    +F+ N+L+H Y     +  A ++F
Sbjct: 115 NNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMF 174

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           + ++  D+VSW T+I G S+   +KE + +F  +   ++K +A T+V ++ ACS L   +
Sbjct: 175 DGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWE 234

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIR------------------------------ 155
              ++  +   N  E ++ L N ++D Y R                              
Sbjct: 235 FADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHA 294

Query: 156 -CGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
             G+L +   LF  MPKR+V+SWT+MI GY++     +AV +FQEM   K  +P++ T+ 
Sbjct: 295 KVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAK-VKPDKVTVA 353

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
           +VLSAC+ +  L  G  VH YI  R+ +     VGN++I+MY KCG V  A++VF+ +  
Sbjct: 354 SVLSACAHLGKLDVGWAVHHYIR-RHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKD 412

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           KD +SW++VISGLA+NG    AL LFS M+   V P   TF+ ++ AC+H GLV++GL  
Sbjct: 413 KDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEY 472

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F++M +V+ +VP M+HY CVVD+  R+G +++A  FI++MPI  +  VW  LL+AC++H 
Sbjct: 473 FESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHG 532

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           N  + +   + L+       G + L+SNT+AG DRW+D  K+R+ +    ++K +G S I
Sbjct: 533 NVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKPSGSSSI 592

Query: 455 EVN 457
           EV+
Sbjct: 593 EVD 595



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 184/378 (48%), Gaps = 39/378 (10%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFY-VTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
           E+HAH+I      D F+ + ++  Y ++  ++  AH +FN +  P +V W  +I GLS+ 
Sbjct: 35  ELHAHLIRTQLHTDPFLMSDVIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHMIRGLSQS 94

Query: 90  GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
               EAI M+  +    +  N  TL+ +  AC+ +     G+ IH H+L+   E+ + + 
Sbjct: 95  DHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFVS 154

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           NA++  Y  CG L     +F  M  R++VSW T+I GY++    KE + +F  M      
Sbjct: 155 NALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAM-TAANI 213

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMY---------- 256
           + +  T+V ++ ACS +    F   +  YI    +L +   +GN +I+MY          
Sbjct: 214 KADAVTMVKIILACSHLGDWEFADSMVKYIKEN-NLEIDVYLGNTLIDMYGRRSLAELAQ 272

Query: 257 ---------------------VKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
                                 K G++  A ++F+ +  +D ISW+++I+G +       
Sbjct: 273 GVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSD 332

Query: 296 ALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVV 355
           A++LF  M+   V PD VT  +++SAC+H G +D G  +   +   + +   +     ++
Sbjct: 333 AVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRR-HGVQADIYVGNSLI 391

Query: 356 DMYGRAGLLEEA-EAFIR 372
           DMY + G++E+A E F R
Sbjct: 392 DMYCKCGMVEKALEVFHR 409



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 128/270 (47%), Gaps = 11/270 (4%)

Query: 122 VSHKLGKAIHAHSLR-NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           +S    K +HAH +R  L+ +  ++ + I  + +   +L     +F ++    +V W  M
Sbjct: 28  ISTDTSKELHAHLIRTQLHTDPFLMSDVIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHM 87

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           I G ++     EA+ ++  M   +    N  TL+ +  AC+ +S +  G+ +H + + + 
Sbjct: 88  IRGLSQSDHPVEAIHMYTRMHH-QGITGNNLTLIFLFKACARVSDIVSGRKIHVH-ALKL 145

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
                  V NA+I+MY  CG +G A ++F+ +  +D +SW+T+I G +     ++ L+LF
Sbjct: 146 GFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLF 205

Query: 301 SLMIINAVFPDDVTFIALISACSHGG---LVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
             M    +  D VT + +I ACSH G     D  +   K  +   ++         ++DM
Sbjct: 206 DAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLG----NTLIDM 261

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           YGR  L E A+     M  E     W AL+
Sbjct: 262 YGRRSLAELAQGVFDRMR-ERNIVSWNALV 290


>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  308 bits (788), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 170/453 (37%), Positives = 264/453 (58%), Gaps = 8/453 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +TF   LK+C+      +  EIH  VI+ G   + F+  +L+  Y   + I SA+++F
Sbjct: 122 NCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLF 181

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
             ++  ++V+WT++ISG   C     A  +F   D+ P  + ++  +     +   ++G 
Sbjct: 182 VGMLERNIVAWTSMISGYILCNRVALARRLF---DLAPERDVVLWNIMVSGYI---EIGD 235

Query: 129 AIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
              A  L + +   + +  N +L+ Y   G + +C  LF +MP+RNV SW  +IGGYA  
Sbjct: 236 MKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHN 295

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G   E +  F+ M       PN+ATLV VLSAC+ + AL  GK+VH Y +T      S  
Sbjct: 296 GCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAAT-IGFKGSIY 354

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           VGNA+I+MY KCG +  A++VF  +  KD I+W+++I GLA +GCG  AL LF  M IN 
Sbjct: 355 VGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKING 414

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
             PD +TFI ++ +C+H GLV++G   F +M   Y I PQ++HY C+VD++GRAGLL+ A
Sbjct: 415 EKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRA 474

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
             F++ MP+EA+  +W ALL ACRI++N ++ +   Q L+  +  +   + L+SN +   
Sbjct: 475 IEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDL 534

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            RW+D  +++  +R  G KK  GCS IEVN S+
Sbjct: 535 GRWKDVARLKILMRDTGSKKLPGCSLIEVNDSV 567



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 179/386 (46%), Gaps = 21/386 (5%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           F   L++C      QK   + A +I +G  ++ ++  +++  +V +K +  A  +F+   
Sbjct: 28  FISLLRSCKTVALLQK---VQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFP 84

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKLGKA 129
            P V  W  I  G     F++E + +F     +DV+PN  T   VL +C+ + +   G+ 
Sbjct: 85  DPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEE 144

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           IH   ++   E N  +   ++D Y    ++ S   LFV M +RN+V+WT+MI GY     
Sbjct: 145 IHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYI---L 201

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVL-SACSSISALSFGKYVHSYISTRYDLSVSNLV 248
           C       +  +   E    +  L N++ S    I  +   + +   +  R  +S     
Sbjct: 202 CNRVALARRLFDLAPE---RDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMS----- 253

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA- 307
            N ++N Y   GDV    Q+F  +  ++  SW+ +I G A NGC  + L+ F  M+I+  
Sbjct: 254 WNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGL 313

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           V P+D T + ++SAC+  G +D G  +    +T+      +     ++DMY + GL+E A
Sbjct: 314 VVPNDATLVTVLSACARLGALDLGKWVHVYAATI-GFKGSIYVGNALIDMYSKCGLIENA 372

Query: 368 EAFIREMPIEAEWSVWGALLNACRIH 393
                 M ++ +   W +++     H
Sbjct: 373 MEVFESMDLK-DLITWNSMICGLATH 397


>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
 gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
          Length = 704

 Score =  308 bits (788), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 168/464 (36%), Positives = 265/464 (57%), Gaps = 41/464 (8%)

Query: 32  IHAHVIEYGHLHD-IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           IH   ++ G + + + + N+L+HFY   K +  A ++F+ +   DVVSWTT++ G ++ G
Sbjct: 164 IHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAG 223

Query: 91  FHKEAIDMFCGIDV----KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
              EA  +FC + V    +PNA TLV+ +SA   +     G  +H +        ++ LD
Sbjct: 224 LADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLD 283

Query: 147 NAILDF-------------------------------YIRCGSLASCGYLFVKMPKRNVV 175
           NA++D                                Y +CG L S   LF  MP+RNVV
Sbjct: 284 NALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVV 343

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS- 234
           SW+ MI  Y++    +EAV +F+EM      +P +ATLV+VLSAC+ +  L  G++++  
Sbjct: 344 SWSCMIAAYSQLNQPEEAVWLFREMIAAG-VDPIDATLVSVLSACAQLGCLDLGRWIYEN 402

Query: 235 -YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG 293
             +S +  L+V+  +GNA+I+M+ KCGDVG A ++F+ +A ++ +SW+T+I   A++G  
Sbjct: 403 YIVSNKIGLTVN--LGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQS 460

Query: 294 RQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
            +A++LF  +    + PD +TF+ L+++CSH GLV +G   FK M   Y I P+++HYAC
Sbjct: 461 EEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYAC 520

Query: 354 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVS 413
           ++D+ G+ GLLEEA    R MP+EA+ + WGALLNACR+H N E+   +   LV      
Sbjct: 521 MIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGNVEIGACVADKLVELDPSD 580

Query: 414 VGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            G + LMS  +A  ++W+    +R  +R  G+KK  GCS IEV 
Sbjct: 581 SGIYVLMSQIYASKNKWDQVKMLRMTMRDRGVKKNPGCSSIEVE 624


>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 652

 Score =  308 bits (788), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 170/453 (37%), Positives = 264/453 (58%), Gaps = 8/453 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +TF   LK+C+      +  EIH  VI+ G   + F+  +L+  Y   + I SA+++F
Sbjct: 164 NCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLF 223

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
             ++  ++V+WT++ISG   C     A  +F   D+ P  + ++  +     +   ++G 
Sbjct: 224 VGMLERNIVAWTSMISGYILCNRVALARRLF---DLAPERDVVLWNIMVSGYI---EIGD 277

Query: 129 AIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
              A  L + +   + +  N +L+ Y   G + +C  LF +MP+RNV SW  +IGGYA  
Sbjct: 278 MKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHN 337

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G   E +  F+ M       PN+ATLV VLSAC+ + AL  GK+VH Y +T      S  
Sbjct: 338 GCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAAT-IGFKGSIY 396

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           VGNA+I+MY KCG +  A++VF  +  KD I+W+++I GLA +GCG  AL LF  M IN 
Sbjct: 397 VGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKING 456

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
             PD +TFI ++ +C+H GLV++G   F +M   Y I PQ++HY C+VD++GRAGLL+ A
Sbjct: 457 EKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRA 516

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
             F++ MP+EA+  +W ALL ACRI++N ++ +   Q L+  +  +   + L+SN +   
Sbjct: 517 IEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDL 576

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            RW+D  +++  +R  G KK  GCS IEVN S+
Sbjct: 577 GRWKDVARLKILMRDTGSKKLPGCSLIEVNDSV 609



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 179/386 (46%), Gaps = 21/386 (5%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           F   L++C      QK   + A +I +G  ++ ++  +++  +V +K +  A  +F+   
Sbjct: 70  FISLLRSCKTVALLQK---VQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFP 126

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKLGKA 129
            P V  W  I  G     F++E + +F     +DV+PN  T   VL +C+ + +   G+ 
Sbjct: 127 DPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEE 186

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           IH   ++   E N  +   ++D Y    ++ S   LFV M +RN+V+WT+MI GY     
Sbjct: 187 IHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYI---L 243

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVL-SACSSISALSFGKYVHSYISTRYDLSVSNLV 248
           C       +  +   E    +  L N++ S    I  +   + +   +  R  +S     
Sbjct: 244 CNRVALARRLFDLAPE---RDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMS----- 295

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA- 307
            N ++N Y   GDV    Q+F  +  ++  SW+ +I G A NGC  + L+ F  M+I+  
Sbjct: 296 WNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGL 355

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           V P+D T + ++SAC+  G +D G  +    +T+      +     ++DMY + GL+E A
Sbjct: 356 VVPNDATLVTVLSACARLGALDLGKWVHVYAATI-GFKGSIYVGNALIDMYSKCGLIENA 414

Query: 368 EAFIREMPIEAEWSVWGALLNACRIH 393
                 M ++ +   W +++     H
Sbjct: 415 MEVFESMDLK-DLITWNSMICGLATH 439


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  308 bits (788), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 167/491 (34%), Positives = 281/491 (57%), Gaps = 35/491 (7%)

Query: 3   SCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIF 62
           S P S       Q +     +    + L IHA +I  GH  D F+   LL        I 
Sbjct: 39  SNPKSLKSLDQKQIISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAID 98

Query: 63  SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 119
            A +IF     P+V  +T +I G    G + EAI ++  +    + P+   + S+L AC 
Sbjct: 99  YASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACG 158

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
           S ++ + G+ +H+ +L+    +N ++   I++ Y +CG L     +F +MP+ +VV+ T 
Sbjct: 159 SQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPE-DVVASTV 217

Query: 180 MIGGYAERGFCKEAVSVFQEM------------------EKTKEA------------EPN 209
           MI  Y+++G  +EA +VF  +                  E+T  A             PN
Sbjct: 218 MISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPN 277

Query: 210 EATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF 269
           E T+V VLSACS + AL  G++VHSY+  ++++ ++  VGNA+INMY +CG +  A  VF
Sbjct: 278 EFTIVCVLSACSQLGALEIGRWVHSYMR-KFEIELNLFVGNALINMYSRCGSIDEAQTVF 336

Query: 270 NMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVD 329
           + +  +D I+++T+ISGL+MNG  RQA++LF +M+   + P +VTF+ +++ACSHGGLVD
Sbjct: 337 DEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVD 396

Query: 330 QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
            G  +F +M+  Y + PQ++HY C+VD+ GR G LEEA   IR M +  +  + G LL+A
Sbjct: 397 FGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSA 456

Query: 390 CRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKT 449
           C++H+N E+ +++ ++L ++     GT+ L+S+ +A + +W++  ++R +++  G++K+ 
Sbjct: 457 CKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEP 516

Query: 450 GCSWIEVNPSI 460
           GCS IEVN  I
Sbjct: 517 GCSSIEVNNEI 527


>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
          Length = 644

 Score =  308 bits (788), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 171/486 (35%), Positives = 271/486 (55%), Gaps = 36/486 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +T    LKAC+     +  +  H  V++ G +  +F+ N+LLH Y +   +  + + F
Sbjct: 109 NEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFF 168

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHK 125
           + +V  +VVSW ++I+G ++ G  +EA  +F G+  +    +  TLVS+L ACS+  + +
Sbjct: 169 DEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLE 228

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK +H+H L      ++IL NA++D Y +CG L      F  MP +N VSWT+M+   A
Sbjct: 229 FGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALA 288

Query: 186 ER-------------------------------GFCKEAVSVFQEMEKTKEAEPNEATLV 214
           +R                               G   EA+ ++  M+    A P+E TL 
Sbjct: 289 KRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLA-PDEFTLA 347

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
            VLSAC  +  L+ GK +H  I   +      L  N++++MY +CG V  AI +F+ +  
Sbjct: 348 AVLSACGQLGDLASGKMIHDCIRDNFHNPGVALF-NSLLDMYARCGQVDTAISLFSEMPS 406

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           K+ ISW+ +I  LAM+G  + AL  F  M+ +A  PD++TF+AL+SAC+HGGL++ G   
Sbjct: 407 KNVISWNAIIGALAMHGRAQDALMFFRSMVSDAFPPDEITFVALLSACNHGGLLEAGQYY 466

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F+AM  VY + P ++HYAC+VD+ GR G L +A   I++MP+  +  VWGALL ACRIH 
Sbjct: 467 FQAMRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHG 526

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           + ++  ++ + L+  +G+S G F L+SN      +WED  ++R  +R  G+KK  G S I
Sbjct: 527 HIQIGKQVIKQLLELEGMSGGLFVLISNMLYETHQWEDMKRLRKLMREWGMKKNMGVSSI 586

Query: 455 EVNPSI 460
           E N +I
Sbjct: 587 ETNSNI 592



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 118/416 (28%), Positives = 208/416 (50%), Gaps = 47/416 (11%)

Query: 15  QALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK---DIFSAHQIFNSV 71
           + L+ C   H   +  ++HAH++ +G + D+  Q  +L  Y  +     ++ A Q+F+ +
Sbjct: 17  ELLRRCGSVH---RLNQLHAHLVVHG-VDDVTSQ--ILASYCALPAGGGVWYARQLFDRI 70

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
             PD   + ++I         +EA+ +  G+    + PN  TL  +L AC+ + + +   
Sbjct: 71  PDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVM 130

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
             H   ++      + + NA+L  Y   GSL      F +M  RNVVSW +MI GYA+ G
Sbjct: 131 VTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAG 190

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
             +EA S+F+ M + +    +E TLV++L ACS+   L FGK VHS++  R    +  ++
Sbjct: 191 NTREACSLFEGMRR-QGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVR-GCRIDLIL 248

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGL--------------------- 287
            NA+++MY KCGD+ +A   F+M+ +K+ +SW++++  L                     
Sbjct: 249 ANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSI 308

Query: 288 ----AMNGC----GR--QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKA 337
               AM  C    GR  +AL L++ M +  + PD+ T  A++SAC   G +  G ++   
Sbjct: 309 ISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDC 368

Query: 338 MSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           +   +   P +  +  ++DMY R G ++ A +   EMP +   S W A++ A  +H
Sbjct: 369 IRDNFH-NPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVIS-WNAIIGALAMH 422



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 132/284 (46%), Gaps = 13/284 (4%)

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224
           LF ++P  +   + ++I  Y      +EA+ + + M + +   PNE TL  +L AC+ + 
Sbjct: 66  LFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIR-RGILPNEFTLPFLLKACARVQ 124

Query: 225 ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVI 284
           A       H  +  +        VGNA+++ Y   G +G + + F+ +  ++ +SW+++I
Sbjct: 125 AWEHVMVTHGVV-VKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMI 183

Query: 285 SGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 344
           +G A  G  R+A  LF  M    +  D+ T ++L+ ACS  G ++ G ++   +  V   
Sbjct: 184 NGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHL-LVRGC 242

Query: 345 VPQMQHYACVVDMYGRAGLLEEAEAFIREMPIE--AEW-SVWGALLNACRIHRNDEMFDR 401
              +     +VDMYG+ G L  A      MP +    W S+  AL     I    + F++
Sbjct: 243 RIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQ 302

Query: 402 IRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445
           I +        S+ ++  M + +    R+ +   + + ++ +GL
Sbjct: 303 IPEK-------SIISWNAMISCYVQGGRFHEALDLYNRMKLLGL 339


>gi|449487105|ref|XP_004157498.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 555

 Score =  308 bits (788), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 159/475 (33%), Positives = 264/475 (55%), Gaps = 49/475 (10%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           +IHA ++  G     +I N LL  Y++   + SA ++F  +  P    W  II G ++  
Sbjct: 45  KIHAQIVVSGFSQKNYILNHLLSLYISFGSLGSAQKVFEDITAPSTTVWNQIIKGHTRSK 104

Query: 91  FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRN---------- 137
             K++I++F  +    V+ N  T   +LSAC      + G+ IH   L N          
Sbjct: 105 TSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSNLYVRT 164

Query: 138 --------------------------LNENNIILDNAILDFYIRCGSLASCGYLFVKMPK 171
                                     + ++N++  N++L  Y+R G       +F +MP+
Sbjct: 165 NLINLYANGGDGGDFDLKRARYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPE 224

Query: 172 RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKY 231
           RNV +WT M+ G+A+ G CK A+S+F +M +    E ++  LV  LSAC+ +  L+ GK+
Sbjct: 225 RNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAG-VELDQVALVAALSACAELGDLTLGKW 283

Query: 232 VHSYISTRYD---LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
           +H Y+   +    L V   + NA+I+MY  CG + +A +VF  +  ++ +SWS++I+G A
Sbjct: 284 IHGYVERTWRSRHLPVLVSLNNALIHMYASCGVMDLAYKVFEEIPQRNTVSWSSIITGFA 343

Query: 289 MNGCGRQALQLFSLMII---NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 345
             GCG +A+++F LM+    N V PD++TFI  ++ACSH GL+  G+ LF++M   + ++
Sbjct: 344 KQGCGVEAIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGLISDGIRLFQSMHKTFGVI 403

Query: 346 PQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQD 405
           PQ++HY C+VD+  RAGLL EA + I  MP++   +VWGALL+ CR+H+NDE+   + + 
Sbjct: 404 PQIEHYGCMVDLLSRAGLLTEALSLIESMPMKPNNAVWGALLSGCRLHKNDEIVSHVAKH 463

Query: 406 L---VNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           L   ++    + G F L++N +A   RW+DT  +R  +  +G+KK +G SWIE+N
Sbjct: 464 LSFEIHPNNQAAGYFMLLANVYAADGRWQDTATVRRNMHDIGVKKPSGRSWIEIN 518



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 128/268 (47%), Gaps = 49/268 (18%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQ-------------------- 48
           N +T++  L AC  +   ++  +IH  V+  G+  +++++                    
Sbjct: 124 NGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSNLYVRTNLINLYANGGDGGDFDLKR 183

Query: 49  ----------------NSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFH 92
                           NSLL  YV   D   A ++F+ +   +V +WT +++G ++ G  
Sbjct: 184 ARYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQC 243

Query: 93  KEAIDMF-----CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN----I 143
           K A+ +F      G+++   A  LV+ LSAC+ L    LGK IH +  R     +    +
Sbjct: 244 KLALSLFDQMRRAGVELDQVA--LVAALSACAELGDLTLGKWIHGYVERTWRSRHLPVLV 301

Query: 144 ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEM--E 201
            L+NA++  Y  CG +     +F ++P+RN VSW+++I G+A++G   EA+ +FQ M   
Sbjct: 302 SLNNALIHMYASCGVMDLAYKVFEEIPQRNTVSWSSIITGFAKQGCGVEAIRIFQLMLCS 361

Query: 202 KTKEAEPNEATLVNVLSACSSISALSFG 229
              E  P+E T +  L+ACS    +S G
Sbjct: 362 GQNEVRPDEITFIGALTACSHAGLISDG 389



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 111/249 (44%), Gaps = 16/249 (6%)

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
           + +   +  + +VL +C S   L+    +H+ I      S  N + N ++++Y+  G +G
Sbjct: 21  RSSRVRQQFIFSVLKSCVSFRNLA---KIHAQIVVS-GFSQKNYILNHLLSLYISFGSLG 76

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
            A +VF  +       W+ +I G   +   +++++LF  M +  V  +  T+  L+SAC 
Sbjct: 77  SAQKVFEDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACV 136

Query: 324 HGGLVDQG------LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIE 377
              L  +G      +++    S +Y     +  YA   D  G    L+ A     EMP +
Sbjct: 137 RSRLFREGEQIHGRVLVNGYWSNLYVRTNLINLYANGGD--GGDFDLKRARYLFDEMP-D 193

Query: 378 AEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIR 437
           +    W +LL A  + R D  FD  R+        +V T+ +M   FA   + +    + 
Sbjct: 194 SNVVGWNSLL-AGYVRRGD--FDGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLF 250

Query: 438 DEIRRMGLK 446
           D++RR G++
Sbjct: 251 DQMRRAGVE 259


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  307 bits (787), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 163/489 (33%), Positives = 272/489 (55%), Gaps = 41/489 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N Y+F   L ACS  +   K +++H+ + +   L D++I ++L+  Y    ++  A ++F
Sbjct: 151 NEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVF 210

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           + +   +VVSW ++I+   + G   EA+D+F  +    V+P+  TL SV+SAC+SL + K
Sbjct: 211 DEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIK 270

Query: 126 LGKAIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASC--------------------GY 164
           +G+ +H   ++N    N+IIL NA +D Y +C  +                       GY
Sbjct: 271 VGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGY 330

Query: 165 -----------LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATL 213
                      +F KM +RNVVSW  +I GY + G  +EA+S+F  + K +   P   + 
Sbjct: 331 AMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFC-LLKRESVCPTHYSF 389

Query: 214 VNVLSACSSISALSFGKYVHSYI---STRYDLSVSN--LVGNAVINMYVKCGDVGIAIQV 268
            N+L AC+ ++ L  G   H ++     ++     +   VGN++I+MYVKCG V     V
Sbjct: 390 ANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLV 449

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F  +  +D +SW+ +I G A NG G +AL+LF  M+ +   PD +T I ++SAC H G V
Sbjct: 450 FRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFV 509

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
           ++G   F +M+  + + P   HY C+VD+ GRAG LEEA++ I EMP++ +  +WG+LL 
Sbjct: 510 EEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLA 569

Query: 389 ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
           AC++HRN  +   + + L+  +  + G + L+SN +A   +WED   +R  +R+ G+ K+
Sbjct: 570 ACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQ 629

Query: 449 TGCSWIEVN 457
            GCSWI++ 
Sbjct: 630 PGCSWIKIQ 638



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 116/431 (26%), Positives = 204/431 (47%), Gaps = 82/431 (19%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           +HA VI+ G  ++IFIQN L+  Y     +    Q+F+ +   ++ +W ++++GL+K GF
Sbjct: 42  VHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGF 101

Query: 92  HKEAIDMFCGIDVKP----------------------------------NANTLVSVLSA 117
             EA  +F  +  +                                   N  +  SVLSA
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSA 161

Query: 118 CSSLVSHKLGKAIHAHSL--RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVV 175
           CS L  + + K +  HSL  ++   +++ + +A++D Y +CG++     +F +M  RNVV
Sbjct: 162 CSGL--NDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVV 219

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           SW ++I  + + G   EA+ VFQ M +++  EP+E TL +V+SAC+S+SA+  G+ VH  
Sbjct: 220 SWNSLITCFEQNGPAVEALDVFQMMLESR-VEPDEVTLASVISACASLSAIKVGQEVHGR 278

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDV-----------------------GIAIQ----- 267
           +     L    ++ NA ++MY KC  +                       G A+      
Sbjct: 279 VVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKA 338

Query: 268 ---VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS- 323
              +F  +A ++ +SW+ +I+G   NG   +AL LF L+   +V P   +F  ++ AC+ 
Sbjct: 339 ARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACAD 398

Query: 324 ----HGGLVDQGLIL---FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPI 376
               H G+     +L   FK  S   + +        ++DMY + G +EE     R+M +
Sbjct: 399 LAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGN---SLIDMYVKCGCVEEGYLVFRKM-M 454

Query: 377 EAEWSVWGALL 387
           E +   W A++
Sbjct: 455 ERDCVSWNAMI 465


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  307 bits (787), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 162/456 (35%), Positives = 261/456 (57%), Gaps = 8/456 (1%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S + +TF   LKAC      Q    +HA V   G   D+F+QN L+  Y   + +  A  
Sbjct: 116 SPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCART 175

Query: 67  IFNSVVFPD--VVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSL 121
           +F  +  P+  +VSWT I+S  ++ G   EA+++F     +DVKP+   LVSVL+A + L
Sbjct: 176 VFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCL 235

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
              + G++IHA  ++   E    L  ++   Y +CG +A+   LF KM   N++ W  MI
Sbjct: 236 QDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMI 295

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
            GYA+ GF K+A+ +F EM   K+  P+  ++ + +SAC+ + +L   +++  Y+S R D
Sbjct: 296 SGYAKNGFAKDAIDLFHEM-INKDVRPDTISITSAISACAQVGSLEQARWMDEYVS-RSD 353

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
                 + +A+I+M+ KCG V  A  VF+    +D + WS +I G  ++G  R+A+ L+ 
Sbjct: 354 YRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYR 413

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            M  + V P+DVTF+ L+ AC+H G+V +G   F  M+  ++I PQ QHYAC++D+ GRA
Sbjct: 414 AMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMAD-HKINPQQQHYACIIDLLGRA 472

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           G L++A   I+ MP++   +VWGALL+AC+ HR+ E+     Q L +    + G +  +S
Sbjct: 473 GHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLS 532

Query: 422 NTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           N +A A  W+   ++R  ++  GL K  GCSW+EV 
Sbjct: 533 NLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVR 568



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 191/373 (51%), Gaps = 19/373 (5%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           +IHA ++  G     F+   L+H   +  DI  A Q+F+ +  P V  W  II G S+  
Sbjct: 39  QIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNN 98

Query: 91  FHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
             ++A+ M+  +    V P++ T   +L AC  L   ++G+ +HA   R   E ++ + N
Sbjct: 99  HFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQN 158

Query: 148 AILDFYIRCGSLASCGYLF--VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            ++  Y +C  L     +F  + +P+R +VSWT ++  YA+ G   EA+ +F +M K  +
Sbjct: 159 GLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKM-D 217

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYI-----STRYDLSVSNLVGNAVINMYVKCG 260
            +P+   LV+VL+A + +  L  G+ +H+ +      T  DL +S      +  MY KCG
Sbjct: 218 VKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLIS------LNTMYAKCG 271

Query: 261 DVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALIS 320
            V  A  +F+ +   + I W+ +ISG A NG  + A+ LF  MI   V PD ++  + IS
Sbjct: 272 QVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAIS 331

Query: 321 ACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 380
           AC+  G ++Q   + + +S   +    +   + ++DM+ + G +E A + + +  ++ + 
Sbjct: 332 ACAQVGSLEQARWMDEYVSRS-DYRDDVFISSALIDMFAKCGSVECARS-VFDRTLDRDV 389

Query: 381 SVWGALLNACRIH 393
            VW A++    +H
Sbjct: 390 VVWSAMIVGYGLH 402



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 17/216 (7%)

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
           L  S  +   +I+     GD+  A QVF+ L       W+ +I G + N   + AL ++S
Sbjct: 49  LQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYS 108

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA--CVVDMYG 359
            M +  V PD  TF  L+ AC  GGL    +  F   + V+ +  +   +    ++ +Y 
Sbjct: 109 KMQLARVSPDSFTFPHLLKAC--GGLSHLQMGRF-VHAQVFRLGFEADVFVQNGLIALYA 165

Query: 360 RAGLLEEAEAFIREMPIEAEWSV-WGALLNACRIHRND----EMFDRIRQDLVNKKGVSV 414
           +   L  A      +P+     V W A+++A   +       E+F ++R     K  V  
Sbjct: 166 KCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMR-----KMDVKP 220

Query: 415 GTFALMS--NTFAGADRWEDTNKIRDEIRRMGLKKK 448
              AL+S  N F      E    I   + +MGL+ +
Sbjct: 221 DCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETE 256


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  307 bits (787), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 167/459 (36%), Positives = 276/459 (60%), Gaps = 11/459 (2%)

Query: 9   NHYTFTQALKACS--LAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           N++T+     AC+  L   H +    H+ V++ G   D  +++SL+  Y    ++  A +
Sbjct: 125 NNFTYPFVFIACANLLVLNHGQC--AHSGVLKSGLCADGHVRHSLITMYSRCGELGCARR 182

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVS 123
           +F+ +   D+VSW ++ISG S+ G+  +A+ +F  +     +P+  TLVS+L AC  L  
Sbjct: 183 VFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGD 242

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
             LG  I    + N  + N  + +A++  Y +CG L+S   +F +M K++VV+W  MI G
Sbjct: 243 LGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITG 302

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           YA+ G   EA+ +F  M ++    P++ TLV VLSAC+SI AL FGK++ +Y S R  L 
Sbjct: 303 YAQNGVSDEAIILFSGMRESG-VNPDKITLVGVLSACASIGALDFGKWLDTYASER-GLQ 360

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
               V  A+I+MY KCG +  A++VF  +  K+++SW+ +IS LA +G  +++L LF  M
Sbjct: 361 NDIYVSTALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRM 420

Query: 304 IIN--AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
                AV P+D++FI ++SAC H GLVD+G  LF  MS+ + +VP+++H++C+VD+  RA
Sbjct: 421 SKEGGAVRPNDISFIGVLSACVHAGLVDEGRQLFDLMSSSFGLVPKIEHHSCMVDLLARA 480

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           G + EA  FI +MP + +  V GALL AC+  RN ++ +R+   L+  + ++ G + + S
Sbjct: 481 GHVHEAWDFIEKMPEKPDEVVLGALLGACQKRRNVDVSERVMHMLLEMEPLNSGNYIISS 540

Query: 422 NTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
             FA   RW+D+ ++R  +R+ G+ K  GCSWIE+   +
Sbjct: 541 KIFANMKRWDDSARMRVLMRQRGVTKTPGCSWIEIENQV 579



 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 115/397 (28%), Positives = 213/397 (53%), Gaps = 19/397 (4%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           LK C+     Q   +IH  +I    ++ I   N LLH ++ +KD  +A  +F+ + +P+ 
Sbjct: 38  LKQCTSTKSLQ---QIHTQMI----INAIHKPNFLLHRFIDLKDFNNASLLFSQIPYPNE 90

Query: 77  VSWTTIISGLS----KCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHA 132
            ++  +I GL+    K     E         ++PN  T   V  AC++L+    G+  H+
Sbjct: 91  YAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACANLLVLNHGQCAHS 150

Query: 133 HSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKE 192
             L++    +  + ++++  Y RCG L     +F ++ ++++VSW +MI GY+  G+  +
Sbjct: 151 GVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGD 210

Query: 193 AVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAV 252
           AV +F EM +    EP+E TLV++L AC  +  L  G ++  ++    ++ +++ VG+A+
Sbjct: 211 AVGLFGEM-RDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFV-VENEMDLNSFVGSAL 268

Query: 253 INMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD 312
           I MY KCGD+  A +VF+ +  KD ++W+ +I+G A NG   +A+ LFS M  + V PD 
Sbjct: 269 IGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDK 328

Query: 313 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIR 372
           +T + ++SAC+  G +D G  L    ++   +   +     ++DMY + G L++A     
Sbjct: 329 ITLVGVLSACASIGALDFGKWL-DTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFE 387

Query: 373 EMPIEAEWSVWGALLNACRIHRNDE----MFDRIRQD 405
           +MP + E S W A+++A   H   +    +F R+ ++
Sbjct: 388 DMPQKNEVS-WNAMISALAFHGRPQESLSLFKRMSKE 423


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  307 bits (787), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 163/457 (35%), Positives = 262/457 (57%), Gaps = 6/457 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T T A+ +C+      + +EIH  +I  G L D FI ++L+  Y     +  A +IF
Sbjct: 206 NSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIF 265

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
             +    VV+W ++ISG    G     I +F  +    VKP   TL S++  CS      
Sbjct: 266 EQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLL 325

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK +H +++RN  + ++ ++++++D Y +CG +     +F  +PK  VVSW  MI GY 
Sbjct: 326 EGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMISGYV 385

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G   EA+ +F EM K+   E +  T  +VL+ACS ++AL  GK +H+ I  +  L  +
Sbjct: 386 AEGKLFEALGLFSEMRKSY-VESDAITFTSVLTACSQLAALEKGKEIHNLIIEK-KLDNN 443

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
            +V  A+++MY KCG V  A  VF  L  +D +SW+++I+    +G    AL+LF+ M+ 
Sbjct: 444 EVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGHAYGALELFAEMLQ 503

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
           + V PD V F+A++SAC H GLVD+G   F  M  VY I+P+++HY+C++D+ GRAG L 
Sbjct: 504 SNVKPDRVAFLAILSACGHAGLVDEGCYYFNQMINVYGIIPRVEHYSCLIDLLGRAGRLH 563

Query: 366 EAEAFIREMP-IEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           EA   +++ P I  +  +   L +ACR+HRN ++   I + L++K      T+ L+SN +
Sbjct: 564 EAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILLSNMY 623

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           A A +W++   +R +++ +GLKK  GCSWIE+N  I 
Sbjct: 624 ASAHKWDEVRVVRSKMKELGLKKNPGCSWIEINQKIL 660



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 120/425 (28%), Positives = 215/425 (50%), Gaps = 23/425 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YT+    KAC   H +     IH  +I+ G + DI + +SL+  Y        A  +F
Sbjct: 105 DSYTYPSVFKACGGLHRYVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLF 164

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHK 125
           N +   DV  W T+IS   + G  K+A++ F        +PN+ T+ + +S+C+ L+   
Sbjct: 165 NEMPEKDVACWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLN 224

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G  IH   + +    +  + +A++D Y +CG L     +F +MPK+ VV+W +MI GY 
Sbjct: 225 RGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYG 284

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
            +G     + +F+ M   +  +P   TL +++  CS  + L  GK+VH Y + R  +   
Sbjct: 285 LKGDIISCIQLFKRM-YNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGY-TIRNRIQPD 342

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V ++++++Y KCG V +A ++F ++     +SW+ +ISG    G   +AL LFS M  
Sbjct: 343 VFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRK 402

Query: 306 NAVFPDDVTFIALISACSHGGLVDQG-----LILFKAMSTVYEIVPQMQHYACVVDMYGR 360
           + V  D +TF ++++ACS    +++G     LI+ K +    E+V        ++DMY +
Sbjct: 403 SYVESDAITFTSVLTACSQLAALEKGKEIHNLIIEKKLDN-NEVV-----MGALLDMYAK 456

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQDLVNKKGVSVGT 416
            G ++EA +  + +P + +   W +++ A   H +     E+F  + Q   N K   V  
Sbjct: 457 CGAVDEAFSVFKCLP-KRDLVSWTSMITAYGSHGHAYGALELFAEMLQS--NVKPDRVAF 513

Query: 417 FALMS 421
            A++S
Sbjct: 514 LAILS 518



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 103/429 (24%), Positives = 216/429 (50%), Gaps = 13/429 (3%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           L+AC  +   ++   IH  V+  G  +DIF+  +L++ Y++      A  +F+++  P  
Sbjct: 10  LRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVFDNMENPCE 69

Query: 77  VS-WTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIH 131
           +S W  +++G +K   + EA+++F  +     +KP++ T  SV  AC  L  + LGK IH
Sbjct: 70  ISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVLGKMIH 129

Query: 132 AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
              ++     +I++ ++++  Y +C +     +LF +MP+++V  W T+I  Y + G  K
Sbjct: 130 TCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFK 189

Query: 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNA 251
           +A+  F  M +    EPN  T+   +S+C+ +  L+ G  +H  +     L + + + +A
Sbjct: 190 DALEYFGLMRRFG-FEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFL-LDSFISSA 247

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD 311
           +++MY KCG + +AI++F  +  K  ++W+++ISG  + G     +QLF  M    V P 
Sbjct: 248 LVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPT 307

Query: 312 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFI 371
             T  +LI  CS    + +G  +    +    I P +   + ++D+Y + G +E AE   
Sbjct: 308 LTTLSSLIMVCSRSARLLEGKFV-HGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIF 366

Query: 372 REMPIEAEWSVWGALLNAC----RIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
           + +P +++   W  +++      ++     +F  +R+  V    ++  +     +  A  
Sbjct: 367 KLIP-KSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAAL 425

Query: 428 DRWEDTNKI 436
           ++ ++ + +
Sbjct: 426 EKGKEIHNL 434



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 130/281 (46%), Gaps = 25/281 (8%)

Query: 107 NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLF 166
           +   L+ +L AC +  S K GK IH   +    +N+I L   +++ Y+ C        +F
Sbjct: 2   DTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVF 61

Query: 167 VKMPKRNVVS-WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
             M     +S W  ++ GY +     EA+ +F+++      +P+  T  +V  AC  +  
Sbjct: 62  DNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHR 121

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285
              GK +H+ +  +  L +  +VG++++ MY KC     AI +FN +  KD   W+TVIS
Sbjct: 122 YVLGKMIHTCL-IKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVIS 180

Query: 286 GLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS-----------HGGLVDQGLIL 334
               +G  + AL+ F LM      P+ VT    IS+C+           H  L++ G +L
Sbjct: 181 CYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLL 240

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP 375
              +S+             +VDMYG+ G LE A     +MP
Sbjct: 241 DSFISSA------------LVDMYGKCGHLEMAIEIFEQMP 269


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  307 bits (787), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 171/488 (35%), Positives = 271/488 (55%), Gaps = 49/488 (10%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           L AC+      +  ++H   I  G + D+F+ N+++  Y     +  A+++F  + F DV
Sbjct: 371 LPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDV 430

Query: 77  VSWTTIISGLSKCG--------FHK---------------------------EAIDMF-- 99
           VSW  +++G S+ G        F +                           EA+D+F  
Sbjct: 431 VSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQ 490

Query: 100 -CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR---NLN-----ENNIILDNAIL 150
            C    +PN  TLVS+LSAC S+ +   GK  H ++++   NL+      +++ + N ++
Sbjct: 491 MCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLI 550

Query: 151 DFYIRCGSLASCGYLF--VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK-TKEAE 207
           D Y +C S      +F  V    R+VV+WT MIGGYA+ G    A+ +F  M K  K  +
Sbjct: 551 DMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIK 610

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
           PN+ TL   L AC+ ++AL FG+ VH+Y+   +  SV   V N +I+MY K GDV  A  
Sbjct: 611 PNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQI 670

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           VF+ +  ++ +SW+++++G  M+G G  AL++F  M    + PD +TF+ ++ ACSH G+
Sbjct: 671 VFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGM 730

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           VD G+  F  MS  + + P  +HYAC+VD++GRAG L EA   I EMP+E    VW ALL
Sbjct: 731 VDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALL 790

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
           +ACR+H N E+ +     L+  +  + G++ L+SN +A A RW+D  +IR  ++R G+KK
Sbjct: 791 SACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKK 850

Query: 448 KTGCSWIE 455
           + GCSWI+
Sbjct: 851 RPGCSWIQ 858



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 124/467 (26%), Positives = 223/467 (47%), Gaps = 69/467 (14%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +HYTF    KAC+          +HA V   G   ++F+ N+++  Y     +  AH +F
Sbjct: 258 DHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMF 317

Query: 69  NSVV---FPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK----PNANTLVSVLSACSSL 121
           + +      D+VSW +++S          A+ +F  +  +    P+  +LV++L AC+SL
Sbjct: 318 DDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASL 377

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
            +   G+ +H  S+R+   +++ + NA++D Y +CG +     +F +M  ++VVSW  M+
Sbjct: 378 AASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMV 437

Query: 182 GGYAERGFCKEAVSVFQEM-EKTKE---------------------------------AE 207
            GY++ G  + A+S+F+ M E+  E                                 + 
Sbjct: 438 TGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSR 497

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL--------VGNAVINMYVKC 259
           PN  TLV++LSAC S+ AL  GK  H Y + ++ L++           V N +I+MY KC
Sbjct: 498 PNVVTLVSLLSACVSVGALLHGKETHCY-AIKFILNLDGPDPGADDLKVINGLIDMYAKC 556

Query: 260 GDVGIAIQVFNMLAYKDK--ISWSTVISGLAMNGCGRQALQLFSLM--IINAVFPDDVTF 315
               +A ++F+ ++ KD+  ++W+ +I G A +G    ALQLFS M  +  ++ P+D T 
Sbjct: 557 QSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTL 616

Query: 316 IALISACSHGGLVDQG-----LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAF 370
              + AC+    +  G      +L     +V   V       C++DMY ++G ++ A+  
Sbjct: 617 SCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVAN-----CLIDMYSKSGDVDTAQIV 671

Query: 371 IREMPIEAEWSVWGALLNACRIHRNDE----MFDRIRQDLVNKKGVS 413
              MP     S W +L+    +H   E    +FD +R+  +   G++
Sbjct: 672 FDNMPQRNAVS-WTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGIT 717



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 128/236 (54%), Gaps = 4/236 (1%)

Query: 106 PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYL 165
           P+  T   V  AC++L S  LG ++HA   R+   +N+ + NA++  Y +CG+L     +
Sbjct: 257 PDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNM 316

Query: 166 FVKMPKR---NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS 222
           F  +  R   ++VSW +++  Y        A+++F +M       P+  +LVN+L AC+S
Sbjct: 317 FDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACAS 376

Query: 223 ISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWST 282
           ++A   G+ VH + S R  L     VGNAV++MY KCG +  A +VF  + +KD +SW+ 
Sbjct: 377 LAASLRGRQVHGF-SIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNA 435

Query: 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM 338
           +++G +  G    AL LF  M    +  D VT+ A+I+  +  G   + L +F+ M
Sbjct: 436 MVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQM 491



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 144/308 (46%), Gaps = 19/308 (6%)

Query: 108 ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFV 167
           A   ++ L  C+SL   KL   +H  S+  +      L   ++  YI   S A    L  
Sbjct: 161 ATIPITALKECNSLAHAKL---LHQQSI--MQGLLFHLATNLIGTYIASNSTAYAILLLE 215

Query: 168 KMPKR--NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
           ++P    +V  W  +I      G  ++  +++++M K+    P+  T   V  AC+++S+
Sbjct: 216 RLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQM-KSLGWTPDHYTFPFVFKACANLSS 274

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DKISWST 282
           LS G  +H+ +S R   + +  V NAV++MY KCG +  A  +F+ L ++   D +SW++
Sbjct: 275 LSLGASLHATVS-RSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNS 333

Query: 283 VISGLAMNGCGRQALQLFSLMIINAVF-PDDVTFIALISACSHGGLVDQGLILFKAMSTV 341
           V+S          AL LF  M    +  PD ++ + ++ AC+      +G  +    S  
Sbjct: 334 VVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQV-HGFSIR 392

Query: 342 YEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL----NACRIHRNDE 397
             +V  +     VVDMY + G +EEA    + M  +   S W A++     A R+     
Sbjct: 393 SGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVS-WNAMVTGYSQAGRLEHALS 451

Query: 398 MFDRIRQD 405
           +F+R+ ++
Sbjct: 452 LFERMTEE 459



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 87/185 (47%), Gaps = 18/185 (9%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIE--YGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           N +T + AL AC+     +   ++HA+V+   YG +  +F+ N L+  Y    D+ +A  
Sbjct: 612 NDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVM-LFVANCLIDMYSKSGDVDTAQI 670

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVS 123
           +F+++   + VSWT++++G    G  ++A+ +F     + + P+  T + VL ACS    
Sbjct: 671 VFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACS---- 726

Query: 124 HKLGKAIHAHSLRNLNENNIILDNA------ILDFYIRCGSLASCGYLFVKMP-KRNVVS 176
              G   H  +  N    +  +D        ++D + R G L     L  +MP +   V 
Sbjct: 727 -HSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVV 785

Query: 177 WTTMI 181
           W  ++
Sbjct: 786 WVALL 790


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  307 bits (786), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 152/452 (33%), Positives = 266/452 (58%), Gaps = 6/452 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L AC+  H       +H + ++ G +    + N LL  Y    D  S ++IF ++
Sbjct: 299 TLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNM 358

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKL---GK 128
           V  +VVSWT +I+  ++ G + +   +F  + ++     + ++ SA  +   ++L   GK
Sbjct: 359 VQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGK 418

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
           ++H +++RN  E  + + NA+++ Y++CG++     +F  +  ++++SW T+IGGY+   
Sbjct: 419 SVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNN 478

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
              EA S+F EM    +  PN  T+  +L A +S+S+L  G+ +H+Y   R  L   + V
Sbjct: 479 LANEAFSLFTEM--LLQLRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLE-DDFV 535

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            NA+I+MYVKCG + +A ++F+ L+ K+ ISW+ +++G  M+G GR A+ LF  M ++ +
Sbjct: 536 ANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGI 595

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD  +F A++ ACSH GL D+G   F AM   ++I P+++HY C+VD+    G L+EA 
Sbjct: 596 APDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAY 655

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
            FI  MPIE + S+W +LL  CRIHRN ++ + + + +   +  + G + L++N +A A+
Sbjct: 656 EFIDSMPIEPDSSIWVSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANIYAEAE 715

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           RWE   K++++I   GL++ TGCSWIE    +
Sbjct: 716 RWEAVRKLKNKIGGRGLRENTGCSWIEAKGKV 747



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 170/336 (50%), Gaps = 10/336 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M  C    + YT +  LK  +     +    +H  + + G      + N+L+ FY     
Sbjct: 187 MHCCGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNR 246

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKP---NANTLVSVLSA 117
              A  +F+ +   DV+SW ++ISG +  G + +AI++F  + ++    ++ TL+SVL A
Sbjct: 247 TKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPA 306

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C+ L    LG+ +H +S++    +   L N +LD Y  C    S   +F  M ++NVVSW
Sbjct: 307 CAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSW 366

Query: 178 TTMIGGYAERGFCKEAVSVFQEM--EKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           T MI  Y   G   +   +FQEM  E T+   P+   + + L A +    L  GK VH Y
Sbjct: 367 TAMITSYTRAGLYDKVAGLFQEMGLEGTR---PDIFAITSALHAFAGNELLKHGKSVHGY 423

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
            + R  +     V NA++ MYVKCG++  A  +F+ +  KD ISW+T+I G + N    +
Sbjct: 424 -AIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANE 482

Query: 296 ALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
           A  LF+ M++  + P+ VT   ++ A +    +++G
Sbjct: 483 AFSLFTEMLLQ-LRPNAVTMTCILPAAASLSSLERG 517



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 157/335 (46%), Gaps = 19/335 (5%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVV-FPDVVSWTTIISGLSKCGFHKEAIDMF--- 99
           D  +   L+  Y+   D+ +A ++F+ +    DV  WT ++SG +K G  +E + +F   
Sbjct: 128 DNVLGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKM 187

Query: 100 --CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCG 157
             CG  V+P+A T+  VL   + L S + G+ +H    +    +   + NA++ FY +  
Sbjct: 188 HCCG--VRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSN 245

Query: 158 SLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVL 217
                  +F  MP R+V+SW +MI G    G   +A+ +F  M    E E + ATL++VL
Sbjct: 246 RTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGE-ELDSATLLSVL 304

Query: 218 SACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK 277
            AC+ +  L  G+ VH Y S +        + N +++MY  C D     ++F  +  K+ 
Sbjct: 305 PACAELHLLFLGRVVHGY-SVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNV 363

Query: 278 ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKA 337
           +SW+ +I+     G   +   LF  M +    PD     + + A +   L+  G  +   
Sbjct: 364 VSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHG- 422

Query: 338 MSTVYEIVPQMQHYACV----VDMYGRAGLLEEAE 368
               Y I   M+    V    ++MY + G +EEA+
Sbjct: 423 ----YAIRNGMEKVLAVTNALMEMYVKCGNMEEAK 453



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 159/345 (46%), Gaps = 47/345 (13%)

Query: 74  PDVVSWTTI---ISGLSKCGFHKEAIDMFC--GIDVKPNANTLVSVLSACSSLVSHKLGK 128
           PD V  + +   I  L + G  +EA+ +    G+D +    +  +VL  CS + S + GK
Sbjct: 56  PDWVPTSDVNLHIQRLCRSGDLEEALGLLGSDGVDDR----SYGAVLQLCSEVRSLEGGK 111

Query: 129 AIH----AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK-RNVVSWTTMIGG 183
             H    A SL     +N++    +L  Y++CG L +   +F +MP+  +V  WT ++ G
Sbjct: 112 RAHFLVRASSLGRDGMDNVLGQKLVL-MYLKCGDLENARRVFDEMPQVSDVRVWTALMSG 170

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           YA+ G  +E V +F++M       P+  T+  VL   + + ++  G+ VH  +  +    
Sbjct: 171 YAKAGDLREGVLLFRKMHCCG-VRPDAYTISCVLKCIAGLGSIEDGEVVHGLLE-KLGFG 228

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
               VGNA++  Y K      AI VF+ + ++D ISW+++ISG   NG   +A++LF  M
Sbjct: 229 SQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRM 288

Query: 304 IINAVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVY---------- 342
            +     D  T ++++ AC+           HG  V  G I   +++ V           
Sbjct: 289 WLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDW 348

Query: 343 ----EIVPQMQH-----YACVVDMYGRAGLLEEAEAFIREMPIEA 378
               +I   M       +  ++  Y RAGL ++     +EM +E 
Sbjct: 349 RSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEG 393



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 62/114 (54%), Gaps = 3/114 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T T  L A +     ++  E+HA+ +  G+L D F+ N+L+  YV    +  A ++F
Sbjct: 497 NAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLF 556

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACS 119
           + +   +++SWT +++G    G  ++AI +F  + V    P+A +  ++L ACS
Sbjct: 557 DRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACS 610


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  307 bits (786), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 160/493 (32%), Positives = 273/493 (55%), Gaps = 36/493 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYV---- 56
           ML+     +H  F   LK+C+L    +    +H  +I  G   D++  N+L++ Y     
Sbjct: 97  MLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWS 156

Query: 57  -----TVKDIF--------------------SAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
                T K +F                    S  ++F  +   D+VSW T+ISG ++ G 
Sbjct: 157 LEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGM 216

Query: 92  HKEAIDM---FCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148
           H++A+ M       D++P++ TL SVL   +  V+   GK IH +++RN  + ++ + ++
Sbjct: 217 HEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSS 276

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
           ++D Y +C  +     +F  +P+ + +SW ++I G  + G   E +  FQ+M   K  +P
Sbjct: 277 LIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAK-IKP 335

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
           N  +  +++ AC+ ++ L  GK +H YI  +R+D +V   + +A+++MY KCG++  A  
Sbjct: 336 NHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNV--FIASALVDMYAKCGNIRTARW 393

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           +F+ +   D +SW+ +I G A++G    A+ LF  M +  V P+ V F+A+++ACSH GL
Sbjct: 394 IFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGL 453

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           VD+    F +M+  Y I+P ++HYA V D+ GR G LEEA  FI +M IE   SVW  LL
Sbjct: 454 VDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLL 513

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
            ACR+H+N E+ +++ + L      ++G + L+SN ++ A RW+D  K+R  +R  G+KK
Sbjct: 514 AACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKK 573

Query: 448 KTGCSWIEVNPSI 460
           K  CSWIE+   +
Sbjct: 574 KPACSWIEIKNKV 586


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 156/449 (34%), Positives = 263/449 (58%), Gaps = 6/449 (1%)

Query: 12   TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
            T   ++ AC+          +H   ++     ++   N+LL  Y    ++  A Q F  +
Sbjct: 656  TLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKM 715

Query: 72   VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
                VVSWT++I+   + G + +AI +F  ++   V P+  ++ SVL AC+   S   G+
Sbjct: 716  GQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGR 775

Query: 129  AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
             +H +  +N     + + NA++D Y +CGS+     +F ++P +++VSW TMIGGY++  
Sbjct: 776  DVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNS 835

Query: 189  FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
               EA+ +F EM+K  E+ P+  T+  +L AC S++AL  G+ +H  I  R   S    V
Sbjct: 836  LPNEALKLFAEMQK--ESRPDGITMACLLPACGSLAALEIGRGIHGCI-LRNGYSSELHV 892

Query: 249  GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
             NA+I+MYVKCG +  A  +F+M+  KD I+W+ +ISG  M+G G +A+  F  M I  +
Sbjct: 893  ANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGI 952

Query: 309  FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
             PD++TF +++ ACSH GL+++G   F +M +   + P+++HYAC+VD+  R G L +A 
Sbjct: 953  KPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAY 1012

Query: 369  AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
              I  MPI+ + ++WGALL  CRIH + E+ +++ + +   +  + G + L++N +A A+
Sbjct: 1013 NLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAE 1072

Query: 429  RWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            +WE+  K+R+ I + GLKK  GCSWIEV 
Sbjct: 1073 KWEEVKKLRERIGKRGLKKSPGCSWIEVQ 1101



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 121/393 (30%), Positives = 206/393 (52%), Gaps = 18/393 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YTF+  LK  +      +   IH  V + G      + NSL+  Y    ++ SAH++F
Sbjct: 552 NSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLF 611

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLVSHK 125
           + +   DVVSW ++ISG    GF   A++ F     + V  +  TLV+ ++AC+++ S  
Sbjct: 612 DELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLS 671

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG+A+H   ++      ++ +N +LD Y +CG+L      F KM ++ VVSWT++I  Y 
Sbjct: 672 LGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYV 731

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G   +A+ +F EME +K   P+  ++ +VL AC+  ++L  G+ VH+YI  + ++++ 
Sbjct: 732 REGLYDDAIRLFYEME-SKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIR-KNNMALC 789

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V NA+++MY KCG +  A  VF+ +  KD +SW+T+I G + N    +AL+LF+ M  
Sbjct: 790 LPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQK 849

Query: 306 NAVFPDDVTFIALISACSHGGLVD-----QGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
            +  PD +T   L+ AC     ++      G IL    S+   +   +      +DMY +
Sbjct: 850 ESR-PDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANAL------IDMYVK 902

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
            G L  A      +P E +   W  +++ C +H
Sbjct: 903 CGSLVHARLLFDMIP-EKDLITWTVMISGCGMH 934



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 152/318 (47%), Gaps = 14/318 (4%)

Query: 109 NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168
           N   S+L  C+     + GK +H+    N      +L   ++  Y+ CG+L     +F  
Sbjct: 452 NAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDH 511

Query: 169 MPKRN-VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 227
           +   N V  W  M+  YA+ G  +E++ +F++M+K      N  T   +L   +++  + 
Sbjct: 512 ILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLG-ITGNSYTFSCILKCFATLGRVG 570

Query: 228 FGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGL 287
             K +H  +  +      N V N++I  Y K G+V  A ++F+ L  +D +SW+++ISG 
Sbjct: 571 ECKRIHGCV-YKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGC 629

Query: 288 AMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILF-KAMSTVYEIVP 346
            MNG    AL+ F  M+I  V  D  T +  ++AC++ G +  G  L  + +   +    
Sbjct: 630 VMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFS--R 687

Query: 347 QMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFD---RIR 403
           ++     ++DMY + G L +A     +M  +   S W +L+ A   +  + ++D   R+ 
Sbjct: 688 EVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVS-WTSLIAA---YVREGLYDDAIRLF 743

Query: 404 QDLVNKKGVSVGTFALMS 421
            ++   KGVS   +++ S
Sbjct: 744 YEM-ESKGVSPDVYSMTS 760


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 155/453 (34%), Positives = 257/453 (56%), Gaps = 6/453 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           + T  ++AC  +   Q    +H ++I  G   D    N L+  Y    D+ +A ++F++ 
Sbjct: 324 SITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTT 383

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMF--CGIDVKPNANTLVSVLSACSSLVSHKLGKA 129
              D V+W ++I+G ++ G++KE ++ F    ++ KP++ T V +LS  S L     G+ 
Sbjct: 384 KCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSIFSQLADINQGRG 443

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           IH   ++   E  +I+ N++LD Y +CG +     +F  M   +++SW T+I        
Sbjct: 444 IHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDD 503

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSVSNLV 248
           C     +  EM +T+   P+EAT++ +L  CS ++    GK +H YI  + ++ +V   +
Sbjct: 504 CTVGFQMINEM-RTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVP--I 560

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
           GNA+I MY KCG +   I+VF  +  KD ++W+ +IS   M G G++AL+ F  M ++ V
Sbjct: 561 GNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGV 620

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD V FIA I ACSH G+V +GL  F  M T Y + P+M+HYACVVD+  R+GLL +AE
Sbjct: 621 LPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAE 680

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
            FI  MP++ + S+WGALL+ACR   N  +  R+ + ++       G + L+SN +A   
Sbjct: 681 EFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLG 740

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           +W+    +R+ ++  GLKK+ G SWIE+   ++
Sbjct: 741 KWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVY 773



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 106/422 (25%), Positives = 211/422 (50%), Gaps = 18/422 (4%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +T +  L AC      ++ + +H  + + G   D+ I N LL  Y   + +  A ++F+ 
Sbjct: 223 FTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSK 282

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSVLSACSSLVSHKLGK 128
           +   D V+W T+I G ++ G H+ ++ +F  +     P+  ++ S + AC      ++GK
Sbjct: 283 MAVKDSVTWNTMICGYAQLGRHEASVKLFMDMIDGFVPDMLSITSTIRACGQSGDLQVGK 342

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H + + +  E + +  N ++D Y +CG L +   +F     ++ V+W ++I GY + G
Sbjct: 343 FVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSG 402

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
           + KE +  F+ M+   E +P+  T V +LS  S ++ ++ G+ +H  +  ++      ++
Sbjct: 403 YYKEGLESFKMMK--MERKPDSVTFVLLLSIFSQLADINQGRGIHCDV-IKFGFEAELII 459

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVI-SGLAMNGCGRQALQLFSLMIINA 307
           GN+++++Y KCG++   ++VF+ ++  D ISW+TVI S +  + C     Q+ + M    
Sbjct: 460 GNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDC-TVGFQMINEMRTEG 518

Query: 308 VFPDDVTFIALISACSHGGLVDQGL----ILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
           + PD+ T + ++  CS   +  QG      +FK  S     VP       +++MY + G 
Sbjct: 519 LMPDEATVLGILPMCSLLAVRRQGKEIHGYIFK--SGFESNVPIGN---ALIEMYSKCGS 573

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           LE      + M  E +   W AL++A  ++   +   +  QD+    GV   + A ++  
Sbjct: 574 LENCIKVFKYMK-EKDVVTWTALISAFGMYGEGKKALKAFQDM-ELSGVLPDSVAFIAFI 631

Query: 424 FA 425
           FA
Sbjct: 632 FA 633



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 119/442 (26%), Positives = 220/442 (49%), Gaps = 22/442 (4%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           P     +  +  LK  S A    +   +H+ +I  G    +     L+  Y  VKD  S+
Sbjct: 14  PEPSQEFLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISS 73

Query: 65  HQIFNSVVFPD-VVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 120
             +F S+   + V  W +II  L+  G   +A+  +  +    ++P+A T  SV+++C+ 
Sbjct: 74  VSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCAR 133

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           ++  +LG  +H H++    E+++ + NA++D Y R   L +  Y+F +M  R+ VSW ++
Sbjct: 134 ILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSL 193

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           I GY   GF ++A+ ++ +   T    P+  T+ +VL AC S+ A+  G  VH  I  + 
Sbjct: 194 ISGYCSNGFWEDALDMYHKFRMTGMV-PDCFTMSSVLLACGSLMAVKEGVAVHGVIE-KI 251

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
            ++   ++GN +++MY K   +  A +VF+ +A KD ++W+T+I G A  G    +++LF
Sbjct: 252 GIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLF 311

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM-STVYEIVPQMQHYAC--VVDM 357
            + +I+   PD ++  + I AC   G +  G  + K +  + +E        AC  ++DM
Sbjct: 312 -MDMIDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFEC----DTVACNILIDM 366

Query: 358 YGRAG-LLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDRIRQDLVNKKGVSVG 415
           Y + G LL   E F  +     +   W +L+N   +     E  +  +   + +K  SV 
Sbjct: 367 YAKCGDLLAAQEVF--DTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMERKPDSV- 423

Query: 416 TFALMSNTFAGADRWEDTNKIR 437
           TF L+ + F+   +  D N+ R
Sbjct: 424 TFVLLLSIFS---QLADINQGR 442


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 164/456 (35%), Positives = 262/456 (57%), Gaps = 8/456 (1%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S + +TF   LKACS     Q    +HA V   G   D+F+QN L+  Y   + + SA  
Sbjct: 116 SPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSART 175

Query: 67  IFNSVVFPD--VVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSL 121
           +F  +  P+  +VSWT I+S  ++ G   EA+++F     +DVKP+   LVSVL+A + L
Sbjct: 176 VFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCL 235

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
              K G++IHA  ++   E    L  ++   Y +CG +A+   LF KM   N++ W  MI
Sbjct: 236 QDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMI 295

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
            GYA+ G+ +EA+ +F EM   K+  P+  ++ + +SAC+ + +L   + ++ Y+  R D
Sbjct: 296 SGYAKNGYAREAIDMFHEM-INKDVRPDTISITSAISACAQVGSLEQARSMYEYVG-RSD 353

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
                 + +A+I+M+ KCG V  A  VF+    +D + WS +I G  ++G  R+A+ L+ 
Sbjct: 354 YRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYR 413

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            M    V P+DVTF+ L+ AC+H G+V +G   F  M+  ++I PQ QHYACV+D+ GRA
Sbjct: 414 AMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMAD-HKINPQQQHYACVIDLLGRA 472

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           G L++A   I+ MP++   +VWGALL+AC+ HR+ E+ +   Q L +    + G +  +S
Sbjct: 473 GHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLS 532

Query: 422 NTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           N +A A  W+   ++R  ++  GL K  GCSW+EV 
Sbjct: 533 NLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVR 568



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 194/374 (51%), Gaps = 21/374 (5%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           +IHA ++  G     F+   L+H   +  DI  A Q+F+ +  P +  W  II G S+  
Sbjct: 39  QIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNN 98

Query: 91  FHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
             ++A+ M+  +    V P++ T   +L ACS L   ++G+ +HA   R   + ++ + N
Sbjct: 99  HFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQN 158

Query: 148 AILDFYIRCGSLASCGYLF--VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            ++  Y +C  L S   +F  + +P+R +VSWT ++  YA+ G   EA+ +F +M K  +
Sbjct: 159 GLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKM-D 217

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
            +P+   LV+VL+A + +  L  G+ +H+ +  +  L +   +  ++  MY KCG V  A
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASV-VKMGLEIEPDLLISLNTMYAKCGQVATA 276

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
             +F+ +   + I W+ +ISG A NG  R+A+ +F  MI   V PD ++  + ISAC+  
Sbjct: 277 KILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQV 336

Query: 326 GLVDQGLILFKAMSTVYEIVPQMQHY------ACVVDMYGRAGLLEEAEAFIREMPIEAE 379
           G ++Q         ++YE V +  +       + ++DM+ + G +E A   + +  ++ +
Sbjct: 337 GSLEQA-------RSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGAR-LVFDRTLDRD 388

Query: 380 WSVWGALLNACRIH 393
             VW A++    +H
Sbjct: 389 VVVWSAMIVGYGLH 402


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 164/456 (35%), Positives = 262/456 (57%), Gaps = 8/456 (1%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S + +TF   LKACS     Q    +HA V   G   D+F+QN L+  Y   + + SA  
Sbjct: 116 SPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSART 175

Query: 67  IFNSVVFPD--VVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSL 121
           +F  +  P+  +VSWT I+S  ++ G   EA+++F     +DVKP+   LVSVL+A + L
Sbjct: 176 VFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCL 235

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
              K G++IHA  ++   E    L  ++   Y +CG +A+   LF KM   N++ W  MI
Sbjct: 236 QDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMI 295

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
            GYA+ G+ +EA+ +F EM   K+  P+  ++ + +SAC+ + +L   + ++ Y+  R D
Sbjct: 296 SGYAKNGYAREAIDMFHEM-INKDVRPDTISITSAISACAQVGSLEQARSMYEYVG-RSD 353

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
                 + +A+I+M+ KCG V  A  VF+    +D + WS +I G  ++G  R+A+ L+ 
Sbjct: 354 YRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYR 413

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            M    V P+DVTF+ L+ AC+H G+V +G   F  M+  ++I PQ QHYACV+D+ GRA
Sbjct: 414 AMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMAD-HKINPQQQHYACVIDLLGRA 472

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           G L++A   I+ MP++   +VWGALL+AC+ HR+ E+ +   Q L +    + G +  +S
Sbjct: 473 GHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLS 532

Query: 422 NTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           N +A A  W+   ++R  ++  GL K  GCSW+EV 
Sbjct: 533 NLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVR 568



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 193/374 (51%), Gaps = 21/374 (5%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           +IHA ++  G     F+   L+H   +  DI  A Q+F+ +  P +  W  II G S+  
Sbjct: 39  QIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNN 98

Query: 91  FHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
             ++A+ M+  +    V P++ T   +L ACS L   ++G+ +HA   R   + ++ + N
Sbjct: 99  HFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQN 158

Query: 148 AILDFYIRCGSLASCGYLF--VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            ++  Y +C  L S   +F  + +P+R +VSWT ++  YA+ G   EA+ +F  M K  +
Sbjct: 159 GLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKM-D 217

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
            +P+   LV+VL+A + +  L  G+ +H+ +  +  L +   +  ++  MY KCG V  A
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASV-VKMGLEIEPDLLISLNTMYAKCGQVATA 276

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
             +F+ +   + I W+ +ISG A NG  R+A+ +F  MI   V PD ++  + ISAC+  
Sbjct: 277 KILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQV 336

Query: 326 GLVDQGLILFKAMSTVYEIVPQMQHY------ACVVDMYGRAGLLEEAEAFIREMPIEAE 379
           G ++Q         ++YE V +  +       + ++DM+ + G +E A   + +  ++ +
Sbjct: 337 GSLEQA-------RSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGAR-LVFDRTLDRD 388

Query: 380 WSVWGALLNACRIH 393
             VW A++    +H
Sbjct: 389 VVVWSAMIVGYGLH 402


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 151/453 (33%), Positives = 272/453 (60%), Gaps = 6/453 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +TF   LK C+L    +    +H  V++Y    D++I+ +LL+ Y    D+ SA  +F
Sbjct: 78  DRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLF 137

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   + V WT++ISG  K     EA+ ++  ++     P+  T+ +++SAC+ L    
Sbjct: 138 ERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLG 197

Query: 126 LGKAIHAHSLRNLNEN-NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           +G  +H+H +R ++     +L +A+++ Y +CG L +   +F K+  ++V +W+ +I GY
Sbjct: 198 VGMKLHSH-IREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGY 256

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
            +     EA+ +F+E+       PNE T++ V+SAC+ +  L  G++VH YI TR     
Sbjct: 257 VKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYI-TRTQKGH 315

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           S  + N++I+M+ KCGD+  A ++F+ ++YKD ISW+++++G A++G GR+AL  F LM 
Sbjct: 316 SVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQ 375

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
              + PD++TFI +++ACSH GLV +G  LF  +  +Y +  + +HY C+VD+  RAGLL
Sbjct: 376 TTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLL 435

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
            EA  FIR MP++ + ++WG++L ACR++ N E+ +   + L+  +  + G + L+SN +
Sbjct: 436 AEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYILLSNIY 495

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           A    W +  K+R+ +   G++K  GCS + ++
Sbjct: 496 AKRKMWNEVKKVRELMNEKGIQKTPGCSSVVID 528



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 183/341 (53%), Gaps = 21/341 (6%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK----PNANTLVSVLSACS 119
           A+ +F      DV++W +++         + A+  +  +  +    P+  T  S+L  C+
Sbjct: 31  AYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
            L+  K+GK +H   ++ +  +++ ++  +L+ Y  CG L S  +LF +M  RN V WT+
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           MI GY +     EA+ ++++ME+   + P+E T+  ++SAC+ +  L  G  +HS+I   
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFS-PDEVTMATLVSACAELKDLGVGMKLHSHIR-E 208

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
            D+ +  ++G+A++NMY KCGD+  A QVF+ L+ KD  +WS +I G   N    +ALQL
Sbjct: 209 MDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQL 268

Query: 300 FSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV---- 354
           F  +   + + P++VT +A+ISAC+  G ++ G         V++ + + Q    V    
Sbjct: 269 FREVAGGSNMRPNEVTILAVISACAQLGDLETG-------RWVHDYITRTQKGHSVSLNN 321

Query: 355 --VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
             +DM+ + G ++ A+     M  +   S W +++N   +H
Sbjct: 322 SLIDMFSKCGDIDAAKRIFDSMSYKDLIS-WNSMVNGFALH 361



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 150/283 (53%), Gaps = 6/283 (2%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S +  T    + AC+        +++H+H+ E        + ++L++ Y    D+ +A Q
Sbjct: 177 SPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQ 236

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF----CGIDVKPNANTLVSVLSACSSLV 122
           +F+ +   DV +W+ +I G  K     EA+ +F     G +++PN  T+++V+SAC+ L 
Sbjct: 237 VFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLG 296

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
             + G+ +H +  R    +++ L+N+++D + +CG + +   +F  M  ++++SW +M+ 
Sbjct: 297 DLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVN 356

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
           G+A  G  +EA++ F+ M+ T + +P+E T + VL+ACS    +  GK +   I   Y +
Sbjct: 357 GFALHGLGREALAQFRLMQ-TTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGV 415

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DKISWSTVI 284
            + +     ++++  + G +  A +   ++  + D   W +++
Sbjct: 416 RLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSML 458


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 155/453 (34%), Positives = 257/453 (56%), Gaps = 6/453 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           + T  ++AC  +   Q    +H ++I  G   D    N L+  Y    D+ +A ++F++ 
Sbjct: 324 SITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTT 383

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMF--CGIDVKPNANTLVSVLSACSSLVSHKLGKA 129
              D V+W ++I+G ++ G++KE ++ F    ++ KP++ T V +LS  S L     G+ 
Sbjct: 384 KCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSIFSQLADINQGRG 443

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           IH   ++   E  +I+ N++LD Y +CG +     +F  M   +++SW T+I        
Sbjct: 444 IHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDD 503

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSVSNLV 248
           C     +  EM +T+   P+EAT++ +L  CS ++    GK +H YI  + ++ +V   +
Sbjct: 504 CTVGFQMINEM-RTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVP--I 560

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
           GNA+I MY KCG +   I+VF  +  KD ++W+ +IS   M G G++AL+ F  M ++ V
Sbjct: 561 GNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGV 620

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD V FIA I ACSH G+V +GL  F  M T Y + P+M+HYACVVD+  R+GLL +AE
Sbjct: 621 LPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAE 680

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
            FI  MP++ + S+WGALL+ACR   N  +  R+ + ++       G + L+SN +A   
Sbjct: 681 EFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLG 740

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           +W+    +R+ ++  GLKK+ G SWIE+   ++
Sbjct: 741 KWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVY 773



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 106/422 (25%), Positives = 211/422 (50%), Gaps = 18/422 (4%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +T +  L AC      ++ + +H  + + G   D+ I N LL  Y   + +  A ++F+ 
Sbjct: 223 FTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSK 282

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSVLSACSSLVSHKLGK 128
           +   D V+W T+I G ++ G H+ ++ +F  +     P+  ++ S + AC      ++GK
Sbjct: 283 MAVKDSVTWNTMICGYAQLGRHEASVKLFMDMIDGFVPDMLSITSTIRACGQSGDLQVGK 342

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H + + +  E + +  N ++D Y +CG L +   +F     ++ V+W ++I GY + G
Sbjct: 343 FVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSG 402

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
           + KE +  F+ M+   E +P+  T V +LS  S ++ ++ G+ +H  +  ++      ++
Sbjct: 403 YYKEGLESFKMMK--MERKPDSVTFVLLLSIFSQLADINQGRGIHCDV-IKFGFEAELII 459

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVI-SGLAMNGCGRQALQLFSLMIINA 307
           GN+++++Y KCG++   ++VF+ ++  D ISW+TVI S +  + C     Q+ + M    
Sbjct: 460 GNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDC-TVGFQMINEMRTEG 518

Query: 308 VFPDDVTFIALISACSHGGLVDQGL----ILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
           + PD+ T + ++  CS   +  QG      +FK  S     VP       +++MY + G 
Sbjct: 519 LMPDEATVLGILPMCSLLAVRRQGKEIHGYIFK--SGFESNVPIGN---ALIEMYSKCGS 573

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           LE      + M  E +   W AL++A  ++   +   +  QD+    GV   + A ++  
Sbjct: 574 LENCIKVFKYMK-EKDVVTWTALISAFGMYGEGKKALKAFQDM-ELSGVLPDSVAFIAFI 631

Query: 424 FA 425
           FA
Sbjct: 632 FA 633



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 199/393 (50%), Gaps = 17/393 (4%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           P     +  +  LK  S A    +   +H+ +I  G    +     L+  Y  VKD  S+
Sbjct: 14  PEPSQEFLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISS 73

Query: 65  HQIFNSVVFPD-VVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 120
             +F S+   + V  W +II  L+  G   +A+  +  +    ++P+A T  SV+++C+ 
Sbjct: 74  VSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCAR 133

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           ++  +LG  +H H++    E+++ + NA++D Y R   L +  Y+F +M  R+ VSW ++
Sbjct: 134 ILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSL 193

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           I GY   GF ++A+ ++ +   T    P+  T+ +VL AC S+ A+  G  VH  I  + 
Sbjct: 194 ISGYCSNGFWEDALDMYHKFRMTGMV-PDCFTMSSVLLACGSLMAVKEGVAVHGVIE-KI 251

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
            ++   ++GN +++MY K   +  A +VF+ +A KD ++W+T+I G A  G    +++LF
Sbjct: 252 GIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLF 311

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM-STVYEIVPQMQHYAC--VVDM 357
            + +I+   PD ++  + I AC   G +  G  + K +  + +E        AC  ++DM
Sbjct: 312 -MDMIDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFEC----DTVACNILIDM 366

Query: 358 YGRAG-LLEEAEAFIREMPIEAEWSVWGALLNA 389
           Y + G LL   E F  +     +   W +L+N 
Sbjct: 367 YAKCGDLLAAQEVF--DTTKCKDSVTWNSLING 397


>gi|449439631|ref|XP_004137589.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 555

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 157/475 (33%), Positives = 263/475 (55%), Gaps = 49/475 (10%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           + HA ++  G     +I N LL  Y++   + SA ++F  +  P    W  II G ++  
Sbjct: 45  KTHAQIVVSGFSQKNYILNHLLSLYISFGSLGSAQKVFEDITAPSTTVWNQIIKGHTRSK 104

Query: 91  FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRN---------- 137
             K++I++F  +    V+ N  T   +LSAC      + G+ IH   L N          
Sbjct: 105 TSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSNLYVRT 164

Query: 138 --------------------------LNENNIILDNAILDFYIRCGSLASCGYLFVKMPK 171
                                     + ++N++  N++L  Y+R G       +F +MP+
Sbjct: 165 NLINLYANGGDGGDFDLKRALYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPE 224

Query: 172 RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKY 231
           RNV +WT M+ G+A+ G CK A+S+F +M +    E ++  LV  LSAC+ +  L+ GK+
Sbjct: 225 RNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAG-VELDQVALVAALSACAELGDLTLGKW 283

Query: 232 VHSYISTRYD---LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
           +H Y+   +    L V   + NA+I+MY  CG + +A ++F  +  ++ +SWS++I+G A
Sbjct: 284 IHGYVERTWRSRHLPVLVSLNNALIHMYASCGAMDLAYKLFEEIPQRNTVSWSSIITGFA 343

Query: 289 MNGCGRQALQLFSLMII---NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 345
             GCG +A+++F LM+    N V PD++TFI  ++ACSH GL+  G+ LF++M   + ++
Sbjct: 344 KQGCGVEAIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGLISDGIRLFQSMHKTFGVI 403

Query: 346 PQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQD 405
           PQ++HY C+VD+  RAGLL EA + I  MP++   +VWGALL+ CR+H+NDE+   + + 
Sbjct: 404 PQIEHYGCMVDLLSRAGLLTEALSLIESMPMKPNNAVWGALLSGCRLHKNDEIVSHVAKH 463

Query: 406 L---VNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           L   ++    + G F L++N +A   RW+DT  +R  +  +G+KK +G SWIE+N
Sbjct: 464 LSFEIDPNNQAAGYFMLLANVYAADGRWQDTATVRRNMHDIGVKKPSGRSWIEIN 518



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 129/268 (48%), Gaps = 49/268 (18%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQ-------------------- 48
           N +T++  L AC  +   ++  +IH  V+  G+  +++++                    
Sbjct: 124 NGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSNLYVRTNLINLYANGGDGGDFDLKR 183

Query: 49  ----------------NSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFH 92
                           NSLL  YV   D   A ++F+ +   +V +WT +++G ++ G  
Sbjct: 184 ALYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQC 243

Query: 93  KEAIDMF-----CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN----I 143
           K A+ +F      G+++   A  LV+ LSAC+ L    LGK IH +  R     +    +
Sbjct: 244 KLALSLFDQMRRAGVELDQVA--LVAALSACAELGDLTLGKWIHGYVERTWRSRHLPVLV 301

Query: 144 ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEM--E 201
            L+NA++  Y  CG++     LF ++P+RN VSW+++I G+A++G   EA+ +FQ M   
Sbjct: 302 SLNNALIHMYASCGAMDLAYKLFEEIPQRNTVSWSSIITGFAKQGCGVEAIRIFQLMLCS 361

Query: 202 KTKEAEPNEATLVNVLSACSSISALSFG 229
              E  P+E T +  L+ACS    +S G
Sbjct: 362 GQNEVRPDEITFIGALTACSHAGLISDG 389



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 110/249 (44%), Gaps = 16/249 (6%)

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
           + +   +  + +VL +C S   L+     H+ I      S  N + N ++++Y+  G +G
Sbjct: 21  RSSRVRQQFIFSVLKSCVSFRNLA---KTHAQIVVS-GFSQKNYILNHLLSLYISFGSLG 76

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
            A +VF  +       W+ +I G   +   +++++LF  M +  V  +  T+  L+SAC 
Sbjct: 77  SAQKVFEDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACV 136

Query: 324 HGGLVDQG------LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIE 377
              L  +G      +++    S +Y     +  YA   D  G    L+ A     EMP +
Sbjct: 137 RSRLFREGEQIHGRVLVNGYWSNLYVRTNLINLYANGGD--GGDFDLKRALYLFDEMP-D 193

Query: 378 AEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIR 437
           +    W +LL A  + R D  FD  R+        +V T+ +M   FA   + +    + 
Sbjct: 194 SNVVGWNSLL-AGYVRRGD--FDGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLF 250

Query: 438 DEIRRMGLK 446
           D++RR G++
Sbjct: 251 DQMRRAGVE 259


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 164/466 (35%), Positives = 275/466 (59%), Gaps = 35/466 (7%)

Query: 28  KALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS 87
           + L IHA +I  GH  D F+   LL        I  A +IF     P+V  +T +I G  
Sbjct: 64  QVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFV 123

Query: 88  KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
             G + +AI ++  +    + P+   + S+L AC S ++ + G+ +H+ +L+    +N +
Sbjct: 124 SSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRL 183

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVF------- 197
           +   I++ Y +CG L     +F +MP+ +VV+ T MI  Y+++G  +EA +VF       
Sbjct: 184 VRLRIMELYGKCGELGDARRVFEEMPE-DVVASTVMISSYSDQGLVEEAGAVFSRVRRKD 242

Query: 198 --------------QEMEKTKEA---------EPNEATLVNVLSACSSISALSFGKYVHS 234
                         +EM +  EA          PNE T+V VLSACS + AL  G++VHS
Sbjct: 243 TVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHS 302

Query: 235 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
           Y+  ++++ ++  VGNA+INMY +CG +  A  VF+ +  +D I+++T+ISGL+MNG  R
Sbjct: 303 YMR-KFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSR 361

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
           QA++LF +MI   + P +VTF+ +++ACSHGGLVD G  +F +M+  Y + PQ++HY C+
Sbjct: 362 QAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCM 421

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414
           VD+ GR G LEEA   IR M +  +  + G LL+AC++H+N E+ +++ + L ++     
Sbjct: 422 VDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADS 481

Query: 415 GTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           GT+ L+S+ +A + +W++  ++R +++  G++K+ GCS IEVN  I
Sbjct: 482 GTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEI 527


>gi|297798072|ref|XP_002866920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312756|gb|EFH43179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 559

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 156/451 (34%), Positives = 265/451 (58%), Gaps = 3/451 (0%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S + +TF    KAC      ++  +IH  V + G   DI++QNSL+HFY    +  +A +
Sbjct: 103 SPDMFTFPPVFKACGKFSGIREGKQIHGTVTKMGFYDDIYVQNSLVHFYGVCGESRNACK 162

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKL 126
           +F+ +   DVVSWT II+G ++ G +KEA+D F  +DV+PN  T V  L +   +    L
Sbjct: 163 VFDQMPVRDVVSWTGIITGFTRTGLYKEALDTFSKMDVEPNLATYVCALVSSGRVGCLSL 222

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           GK IH   L+  +  ++   NA++D Y++C  L+    +F ++ K++ VSW +MI G   
Sbjct: 223 GKGIHGLILKRASLISLETGNALIDMYVKCEQLSDAMTVFGELQKKDKVSWNSMISGLVH 282

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
                EA+ +F  M+ +   +P+   L +VLSAC+S+ A+ +G++VH Y+ +   +    
Sbjct: 283 CERSNEAIELFSMMQTSSGIKPDGHILTSVLSACASLGAVDYGRWVHEYVLSA-GIKWDT 341

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            +G A+++MY KCG +  A+++FN +  K+  +W+ ++ GLA++G G ++L+ F  M+  
Sbjct: 342 HIGTAIVDMYAKCGYIETALKIFNGIRRKNVFTWNALLGGLAIHGHGHESLRYFEEMVKL 401

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV-YEIVPQMQHYACVVDMYGRAGLLE 365
              P+ VTF+A+++AC H GLVD+G   F  M T  Y + P+++HY C++D++ RAGLL+
Sbjct: 402 GFKPNLVTFLAILNACCHTGLVDEGRRYFHKMKTREYNLSPKLEHYGCLIDLFCRAGLLD 461

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRN-DEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           EA   I+ MP++ +  + GA+L+AC+      E+   I    +  +    G + L+SN F
Sbjct: 462 EALELIKAMPVKPDVRICGAVLSACKSRGTLMELPKEILDSFLEMEFEDSGVYVLLSNIF 521

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
           A   RW+D ++IR  ++  G+ K  G S IE
Sbjct: 522 AANRRWDDVSRIRRLMKVKGISKVPGSSSIE 552



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 113/373 (30%), Positives = 180/373 (48%), Gaps = 21/373 (5%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV------VSWTTIIS 84
           +I   +I    L D    N ++ F     D  +    ++SV+   +       S+ T++S
Sbjct: 24  QIQTQLISRDILRDELFINKVVTFLGKSADFAT----YSSVILHSIRSVLSSFSYNTLLS 79

Query: 85  GLSKCGFHKEAI---DMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNEN 141
             + C   +  I    +F      P+  T   V  AC      + GK IH    +    +
Sbjct: 80  SYAVCDKPRMTIFVYRVFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGTVTKMGFYD 139

Query: 142 NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME 201
           +I + N+++ FY  CG   +   +F +MP R+VVSWT +I G+   G  KEA+  F +M 
Sbjct: 140 DIYVQNSLVHFYGVCGESRNACKVFDQMPVRDVVSWTGIITGFTRTGLYKEALDTFSKM- 198

Query: 202 KTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGD 261
              + EPN AT V  L +   +  LS GK +H  I  R  L +S   GNA+I+MYVKC  
Sbjct: 199 ---DVEPNLATYVCALVSSGRVGCLSLGKGIHGLILKRASL-ISLETGNALIDMYVKCEQ 254

Query: 262 VGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA-VFPDDVTFIALIS 320
           +  A+ VF  L  KDK+SW+++ISGL       +A++LFS+M  ++ + PD     +++S
Sbjct: 255 LSDAMTVFGELQKKDKVSWNSMISGLVHCERSNEAIELFSMMQTSSGIKPDGHILTSVLS 314

Query: 321 ACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 380
           AC+  G VD G  + + + +   I         +VDMY + G +E A      +  +  +
Sbjct: 315 ACASLGAVDYGRWVHEYVLSA-GIKWDTHIGTAIVDMYAKCGYIETALKIFNGIRRKNVF 373

Query: 381 SVWGALLNACRIH 393
           + W ALL    IH
Sbjct: 374 T-WNALLGGLAIH 385


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 167/487 (34%), Positives = 273/487 (56%), Gaps = 36/487 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV---------- 58
           N +TF    K+C+ A    +  ++HAH ++     +  +  S++H Y +V          
Sbjct: 130 NSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVF 189

Query: 59  -----KDIFS----------------AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAID 97
                +D  S                A ++F+ +   DVVSW  +ISG  + G  +EAI 
Sbjct: 190 DKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIV 249

Query: 98  MFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
            F  +   +V PN +T+V VLSAC    S +LGK I +    N   +N+ L NA++D Y 
Sbjct: 250 CFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYC 309

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           +CG       LF  + +++V+SW TMIGGY+     +EA+++F+ M ++   +PN+ T +
Sbjct: 310 KCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSN-VKPNDVTFL 368

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
            +L AC+ + AL  GK+VH+YI      S +  +  ++I+MY KCG +  A +VF  +  
Sbjct: 369 GILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHS 428

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF-PDDVTFIALISACSHGGLVDQGLI 333
           ++  SW+ ++SG AM+G   +AL LFS M+   +F PDD+TF+ ++SAC+  GLVD G  
Sbjct: 429 RNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQ 488

Query: 334 LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
            F++M   Y I P++QHY C++D+  RA   EEAE  ++ M +E + ++WG+LL+AC+ H
Sbjct: 489 YFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAH 548

Query: 394 RNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSW 453
              E  + + + L   +  + G F L+SN +AGA RW+D  +IR  +   G+KK  GC+ 
Sbjct: 549 GRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTS 608

Query: 454 IEVNPSI 460
           IE++  +
Sbjct: 609 IEIDGDV 615



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 124/436 (28%), Positives = 213/436 (48%), Gaps = 49/436 (11%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVK--DIFSAHQIFNSVV---FPDVVSWTTIISG 85
           +IH+ +I+ G  + +F+Q+ L+HF       D+  A  +F         +V  W ++I G
Sbjct: 46  QIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQHHKHNVFIWNSLIRG 105

Query: 86  LSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR------ 136
            S       ++ +F  +    V+PN++T   +  +C+   +   GK +HAH+L+      
Sbjct: 106 YSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFN 165

Query: 137 ---------------NLNENNIILDN----------AILDFYIRCGSLASCGYLFVKMPK 171
                           ++   ++ D           A++  Y+  G L     LF ++P 
Sbjct: 166 PHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPV 225

Query: 172 RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKY 231
           ++VVSW  MI GY + G  +EA+  F EM++     PN++T+V VLSAC    +   GK+
Sbjct: 226 KDVVSWNAMISGYVQSGRFEEAIVCFYEMQEAN-VLPNKSTMVVVLSACGHTRSGELGKW 284

Query: 232 VHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMN 290
           + S++  R +   SNL + NA+I+MY KCG+  IA ++F+ +  KD ISW+T+I G +  
Sbjct: 285 IGSWV--RDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYL 342

Query: 291 GCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQH 350
               +AL LF +M+ + V P+DVTF+ ++ AC+  G +D G  +   +            
Sbjct: 343 SLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASL 402

Query: 351 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKK 410
           +  ++DMY + G +E AE   R M      + W A+L+   +H + E    +  ++VNK 
Sbjct: 403 WTSLIDMYAKCGCIEAAERVFRSMH-SRNLASWNAMLSGFAMHGHAERALALFSEMVNK- 460

Query: 411 GVSVGTFALMSNTFAG 426
               G F     TF G
Sbjct: 461 ----GLFRPDDITFVG 472


>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
           [Vitis vinifera]
 gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 170/459 (37%), Positives = 266/459 (57%), Gaps = 13/459 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +TF   LKA S    ++   + +AH++++G   D F+QNSL+  +     +  + ++F
Sbjct: 103 DRHTFPLLLKAFSKLR-NENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLF 161

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
                 DVVSWT +I+G  + G   EA++ F  +    V+ +  T+VSVL A + L    
Sbjct: 162 IETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVW 221

Query: 126 LGKAIHAHSLRNLNENNIILD----NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
            G+ +H   + +     +I D    +A++D Y +CG       +F +MP RN+VSW  +I
Sbjct: 222 FGRWVHGFYVES---GRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALI 278

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
            GY +    KEA+ VFQEM   +  EPN++T+ + L+AC+ + +L  G+++H Y+  R  
Sbjct: 279 AGYVQCNRYKEALKVFQEM-IIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVD-RSK 336

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
           L +++ +G A+++MY KCG V  A+ VF  L  KD   W+ +I+GLAM G    +L LFS
Sbjct: 337 LGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFS 396

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            MI + V P+ VTF+ ++SAC+HGGLVD+GL LF+ M   Y + P + HY C+VD+ GRA
Sbjct: 397 QMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRA 456

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           G LEEA  FI  MP+E    VWGAL + C IH+  E+ + I   L+  +    G + L++
Sbjct: 457 GRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLA 516

Query: 422 NTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           N ++   +WE    +R  ++  G+ K   CSWIEVN  I
Sbjct: 517 NLYSRCQKWEAAANVRRLMKGKGVDKSPACSWIEVNGVI 555



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 191/386 (49%), Gaps = 15/386 (3%)

Query: 36  VIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEA 95
           +I  G  H  F  + LL      KD+     +F+ +  P +  W TI+   S     +  
Sbjct: 31  LITSGLAHHTFFLSDLLR--SATKDLGYTLLLFDRLATPYIFLWNTIVRSFSASSQPQMV 88

Query: 96  IDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDF 152
           +  +  +    V P+ +T   +L A S L +    +  +AH ++   + +  + N+++  
Sbjct: 89  LVAYSRLRNHGVIPDRHTFPLLLKAFSKLRNENPFQ-FYAHIVKFGLDFDAFVQNSLVSA 147

Query: 153 YIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEAT 212
           +  CG +     LF++  K++VVSWT +I G    G   EA+  F EM ++   E +E T
Sbjct: 148 FAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEM-RSSGVEVDEVT 206

Query: 213 LVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 272
           +V+VL A + +  + FG++VH +      +     VG+A+++MY KCG    A++VFN +
Sbjct: 207 VVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEM 266

Query: 273 AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL 332
             ++ +SW  +I+G       ++AL++F  MII  + P+  T  + ++AC+  G +DQG 
Sbjct: 267 PTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGR 326

Query: 333 ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI 392
            L + +    ++    +    +VDMY + G ++EA     ++P +  +  W A++N   +
Sbjct: 327 WLHEYVDRS-KLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYP-WTAMINGLAM 384

Query: 393 HRND-----EMFDRIRQDLVNKKGVS 413
            R D      +F ++ +  V   GV+
Sbjct: 385 -RGDALSSLNLFSQMIRSRVQPNGVT 409


>gi|15233645|ref|NP_195514.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213618|sp|Q9SZK1.1|PP355_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g38010
 gi|4467107|emb|CAB37541.1| putative protein [Arabidopsis thaliana]
 gi|7270784|emb|CAB80466.1| putative protein [Arabidopsis thaliana]
 gi|332661463|gb|AEE86863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 160/452 (35%), Positives = 266/452 (58%), Gaps = 5/452 (1%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S + +TF    KAC      ++  +IH  V + G   DI++QNSL+HFY    +  +A +
Sbjct: 103 SPDMFTFPPVFKACGKFSGIREGKQIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACK 162

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKL 126
           +F  +   DVVSWT II+G ++ G +KEA+D F  +DV+PN  T V VL +   +    L
Sbjct: 163 VFGEMPVRDVVSWTGIITGFTRTGLYKEALDTFSKMDVEPNLATYVCVLVSSGRVGCLSL 222

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           GK IH   L+  +  ++   NA++D Y++C  L+    +F ++ K++ VSW +MI G   
Sbjct: 223 GKGIHGLILKRASLISLETGNALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVH 282

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
               KEA+ +F  M+ +   +P+   L +VLSAC+S+ A+  G++VH YI T   +    
Sbjct: 283 CERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACASLGAVDHGRWVHEYILTA-GIKWDT 341

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            +G A+++MY KCG +  A+++FN +  K+  +W+ ++ GLA++G G ++L+ F  M+  
Sbjct: 342 HIGTAIVDMYAKCGYIETALEIFNGIRSKNVFTWNALLGGLAIHGHGLESLRYFEEMVKL 401

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAM-STVYEIVPQMQHYACVVDMYGRAGLLE 365
              P+ VTF+A ++AC H GLVD+G   F  M S  Y + P+++HY C++D+  RAGLL+
Sbjct: 402 GFKPNLVTFLAALNACCHTGLVDEGRRYFHKMKSREYNLFPKLEHYGCMIDLLCRAGLLD 461

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRND--EMFDRIRQDLVNKKGVSVGTFALMSNT 423
           EA   ++ MP++ +  + GA+L+AC+ +R    E+   I    ++ +    G + L+SN 
Sbjct: 462 EALELVKAMPVKPDVRICGAILSACK-NRGTLMELPKEILDSFLDIEFEDSGVYVLLSNI 520

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
           FA   RW+D  +IR  ++  G+ K  G S+IE
Sbjct: 521 FAANRRWDDVARIRRLMKVKGISKVPGSSYIE 552



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 118/373 (31%), Positives = 182/373 (48%), Gaps = 21/373 (5%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV------VSWTTIIS 84
           +I   +I    L D  I N ++ F     D  S    ++SV+   +       S+ T++S
Sbjct: 24  QIQTQLITRDLLRDDLIINKVVTFLGKSADFAS----YSSVILHSIRSVLSSFSYNTLLS 79

Query: 85  GLSKCGFHKEAI---DMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNEN 141
             + C   +  I     F      P+  T   V  AC      + GK IH    +    +
Sbjct: 80  SYAVCDKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGIVTKMGFYD 139

Query: 142 NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME 201
           +I + N+++ FY  CG   +   +F +MP R+VVSWT +I G+   G  KEA+  F +M 
Sbjct: 140 DIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRTGLYKEALDTFSKM- 198

Query: 202 KTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGD 261
              + EPN AT V VL +   +  LS GK +H  I  R  L +S   GNA+I+MYVKC  
Sbjct: 199 ---DVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASL-ISLETGNALIDMYVKCEQ 254

Query: 262 VGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA-VFPDDVTFIALIS 320
           +  A++VF  L  KDK+SW+++ISGL      ++A+ LFSLM  ++ + PD     +++S
Sbjct: 255 LSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILTSVLS 314

Query: 321 ACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 380
           AC+  G VD G  + + + T   I         +VDMY + G +E A      +  +  +
Sbjct: 315 ACASLGAVDHGRWVHEYILTA-GIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNVF 373

Query: 381 SVWGALLNACRIH 393
           + W ALL    IH
Sbjct: 374 T-WNALLGGLAIH 385



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 19/201 (9%)

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI--A 265
           P ++ L+ ++S CSS+      K + + + TR DL   +L+ N V+    K  D     +
Sbjct: 4   PEKSVLLELISRCSSLRVF---KQIQTQLITR-DLLRDDLIINKVVTFLGKSADFASYSS 59

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
           + + ++ +     S++T++S  A+    R  +  +   + N   PD  TF  +  AC   
Sbjct: 60  VILHSIRSVLSSFSYNTLLSSYAVCDKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKF 119

Query: 326 GLVDQGLILFKAMSTVYEIVPQMQHYA------CVVDMYGRAGLLEEAEAFIREMPIEAE 379
             + +G         ++ IV +M  Y        +V  YG  G    A     EMP+   
Sbjct: 120 SGIREG-------KQIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDV 172

Query: 380 WSVWGALLNACRIHRNDEMFD 400
            S  G +    R     E  D
Sbjct: 173 VSWTGIITGFTRTGLYKEALD 193


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 151/453 (33%), Positives = 273/453 (60%), Gaps = 6/453 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +TF   LK C+L    +    +H  V++Y    D++I+ +LL+ Y    D+ SA  +F
Sbjct: 78  DRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLF 137

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   + V WT++ISG  K     EA+ ++  ++     P+  T+ +++SAC+ L    
Sbjct: 138 ERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLG 197

Query: 126 LGKAIHAHSLRNLNEN-NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           +G  +H+H +R ++     +L +A+++ Y +CG L +   +F ++  ++V +W+ +I GY
Sbjct: 198 VGMKLHSH-IREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGY 256

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
            +     EA+ +F+E+       PNE T++ V+SAC+ +  L  G++VH YI TR     
Sbjct: 257 VKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYI-TRTQKGH 315

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           S  + N++I+M+ KCGD+  A ++F+ ++YKD ISW+++++GLA++G GR+AL  F LM 
Sbjct: 316 SVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQ 375

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
              + PD++TFI +++ACSH GLV +G  LF  +  +Y +  + +HY C+VD+  RAGLL
Sbjct: 376 TTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLL 435

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
            EA  FIR MP++ + ++WG++L ACR++ N E+ +   + L+  +  + G + L+SN +
Sbjct: 436 AEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIY 495

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           A    W +  K+R+ +   G++K  GCS + ++
Sbjct: 496 ARRKMWNEVKKVRELMNEKGIQKTPGCSSVVID 528



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 183/341 (53%), Gaps = 21/341 (6%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK----PNANTLVSVLSACS 119
           A+ +F      DV++W +++         + A+  +  +  +    P+  T  S+L  C+
Sbjct: 31  AYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
            L+  K+GK +H   ++ +  +++ ++  +L+ Y  CG L S  +LF +M  RN V WT+
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           MI GY +     EA+ ++++ME+   + P+E T+  ++SAC+ +  L  G  +HS+I   
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFS-PDEVTMATLVSACAELKDLGVGMKLHSHIR-E 208

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
            D+ +  ++G+A++NMY KCGD+  A QVF+ L+ KD  +WS +I G   N    +ALQL
Sbjct: 209 MDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQL 268

Query: 300 FSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV---- 354
           F  +   + + P++VT +A+ISAC+  G ++ G         V++ + + Q    V    
Sbjct: 269 FREVAGGSNMRPNEVTILAVISACAQLGDLETG-------RWVHDYITRTQKGHSVSLNN 321

Query: 355 --VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
             +DM+ + G ++ A+     M  +   S W +++N   +H
Sbjct: 322 SLIDMFSKCGDIDAAKRIFDSMSYKDLIS-WNSMVNGLALH 361



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 148/283 (52%), Gaps = 6/283 (2%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S +  T    + AC+        +++H+H+ E        + ++L++ Y    D+ +A Q
Sbjct: 177 SPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQ 236

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF----CGIDVKPNANTLVSVLSACSSLV 122
           +F+ +   DV +W+ +I G  K     EA+ +F     G +++PN  T+++V+SAC+ L 
Sbjct: 237 VFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLG 296

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
             + G+ +H +  R    +++ L+N+++D + +CG + +   +F  M  ++++SW +M+ 
Sbjct: 297 DLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVN 356

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
           G A  G  +EA++ F  M+ T + +P+E T + VL+ACS    +  GK +   I   Y +
Sbjct: 357 GLALHGLGREALAQFHLMQ-TTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGV 415

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DKISWSTVI 284
            + +     ++++  + G +  A +   ++  + D   W +++
Sbjct: 416 RLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSML 458


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 170/460 (36%), Positives = 254/460 (55%), Gaps = 43/460 (9%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML      N YT+   LKACS     +  +EIH+H   +G   D+F+  +L+ FY     
Sbjct: 100 MLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGI 159

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           +  A ++F+S+   DVV+W  +I+G S  G   +A+ +   +    + PN++T+V VL  
Sbjct: 160 LVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPT 219

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C  L+                              Y R         +F  M  RN VSW
Sbjct: 220 CQCLL------------------------------YAR--------KIFDVMGVRNEVSW 241

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
           + MIGGY      KEA+ +F+ M+ +   +P+  T++ VL ACS ++AL  G   H Y+ 
Sbjct: 242 SAMIGGYVASDCMKEALDIFRMMQLSG-IDPDLTTMLGVLPACSHLAALQHGFCSHGYLI 300

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            R   +   L+ NA+I+MY KCG +  A +VFN +   D +SW+ +I G  ++G G +AL
Sbjct: 301 VR-GFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEAL 359

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
            LF  ++   + PDD+TFI L+S+CSH GLV +G + F AMS  + IVP+M+H  C+VD+
Sbjct: 360 GLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDI 419

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTF 417
            GRAGL++EA  FIR MP E +  +W ALL+ACRIH+N E+ + + + + +    S G F
Sbjct: 420 LGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNF 479

Query: 418 ALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            L+SN ++ A RW+D   IR   +  GLKK  GCSWIE+N
Sbjct: 480 VLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEIN 519



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 177/390 (45%), Gaps = 55/390 (14%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
            +   L+AC  +    +A +IH H ++     D  + + L   Y++   +  A ++F+ +
Sbjct: 10  NYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEI 69

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGK 128
             P V+ W  II   +  G    AID++     + V+PN  T   VL ACS L++ + G 
Sbjct: 70  PNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGV 129

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IH+H+     E+++ +  A++DFY +CG L     LF  M  R+VV+W  MI G +  G
Sbjct: 130 EIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYG 189

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
            C +AV +  +M++     PN +T+V VL  C  +                         
Sbjct: 190 LCDDAVQLIMQMQEEGIC-PNSSTIVGVLPTCQCL------------------------- 223

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
                 +Y +        ++F+++  ++++SWS +I G   + C ++AL +F +M ++ +
Sbjct: 224 ------LYAR--------KIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGI 269

Query: 309 FPDDVTFIALISACSH-----GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
            PD  T + ++ ACSH      G    G ++ +  +T   I   +      +DMY + G 
Sbjct: 270 DPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNAL------IDMYSKCGK 323

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           +  A      M    +   W A++    IH
Sbjct: 324 ISFAREVFNRMD-RHDIVSWNAMIIGYGIH 352



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 106/215 (49%), Gaps = 2/215 (0%)

Query: 109 NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168
           N  + +L AC    S    K IH H L+N +  +  + + +   Y+ C  +     LF +
Sbjct: 9   NNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDE 68

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           +P  +V+ W  +I  YA  G    A+ ++  M       PN+ T   VL ACS + A+  
Sbjct: 69  IPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLG-VRPNKYTYPFVLKACSGLLAIED 127

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
           G  +HS+ +  + L     V  A+++ Y KCG +  A ++F+ ++++D ++W+ +I+G +
Sbjct: 128 GVEIHSH-AKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCS 186

Query: 289 MNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
           + G    A+QL   M    + P+  T + ++  C 
Sbjct: 187 LYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQ 221


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  305 bits (781), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 168/488 (34%), Positives = 273/488 (55%), Gaps = 38/488 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +++     LKAC      Q   EIH  V++ G   D+F+ N+L+  Y     +  A  +F
Sbjct: 123 DNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVF 182

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           + ++  DVVSW+T+I  LS+      A+++   ++   V+P+   +VS+++  +   + +
Sbjct: 183 DKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMR 242

Query: 126 LGKAIHAHSLRNLNENN--IILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
           +GKA+HA+ +RN N  +  +    A+LD Y +CG L     LF  + ++ VVSWT MI G
Sbjct: 243 MGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAG 302

Query: 184 -------------------------------YAERGFCKEAVSVFQEMEKTKEAEPNEAT 212
                                          YA+     +A ++F +M +T    P + T
Sbjct: 303 CIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQM-RTSGVRPTKVT 361

Query: 213 LVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 272
           +V++LS C+   AL  GK+VHSYI  +  + V  ++  A+++MY KCGD+  A ++F   
Sbjct: 362 IVSLLSLCAVAGALDLGKWVHSYID-KERVEVDCILNTALVDMYAKCGDINAAGRLFIEA 420

Query: 273 AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL 332
             +D   W+ +I+G AM+G G +AL +F+ M    V P+D+TFI L+ ACSH GLV +G 
Sbjct: 421 ISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGK 480

Query: 333 ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI 392
            LF+ M   + +VPQ++HY C+VD+ GRAGLL+EA   I+ MPI+    VWGAL+ ACR+
Sbjct: 481 KLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRL 540

Query: 393 HRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCS 452
           H+N ++ +     L+  +  + G   LMSN +A A+RW D   +R  ++ +G+KK+ G S
Sbjct: 541 HKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHS 600

Query: 453 WIEVNPSI 460
            IEVN ++
Sbjct: 601 VIEVNGTV 608



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 180/404 (44%), Gaps = 59/404 (14%)

Query: 27  QKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGL 86
           ++  +IHAH+I+  H H            + + D       F S + P    W  +I+  
Sbjct: 57  EQTKQIHAHIIKT-HFHHAL--------QIPLND-------FPSGLSPSA-QWNFVITSY 99

Query: 87  SKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNI 143
           +K    + A++++  +   D + +     SVL AC  +   +LGK IH   L+   + ++
Sbjct: 100 TKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDV 159

Query: 144 ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
            + NA++  Y  C  +     +F KM +R+VVSW+TMI   +       A+ + +EM   
Sbjct: 160 FVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREM-NF 218

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYI---STRYDLSVSNLVGNAVINMYVKCG 260
            +  P+E  +V++++  +  + +  GK +H+Y+   S    + V      A+++MY KCG
Sbjct: 219 MQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTT--ALLDMYAKCG 276

Query: 261 DVGIAIQVFNMLAYKDKISWSTVISG-------------------------------LAM 289
            +G+A Q+FN L  K  +SW+ +I+G                                A 
Sbjct: 277 HLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQ 336

Query: 290 NGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQ 349
             C  QA  LF  M  + V P  VT ++L+S C+  G +D G  +   +      V  + 
Sbjct: 337 ANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCIL 396

Query: 350 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           + A +VDMY + G +  A     E  I  +  +W A++    +H
Sbjct: 397 NTA-LVDMYAKCGDINAAGRLFIE-AISRDICMWNAIITGFAMH 438


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  305 bits (781), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 160/451 (35%), Positives = 266/451 (58%), Gaps = 6/451 (1%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           +   LK C+     ++   +H HV+     HD+ IQNSLL  Y     +  A ++F+ + 
Sbjct: 77  YNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMP 136

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKA 129
             D+VSWT++I+G ++     +A+ +F  +     +PN  TL S++  C  + S+  G+ 
Sbjct: 137 HRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQ 196

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           IHA   +    +N+ + ++++D Y RCG L     +F K+  +N VSW  +I GYA +G 
Sbjct: 197 IHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGE 256

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
            +EA+++F  M++ +   P E T   +LS+CSS+  L  GK++H+++  +    +   VG
Sbjct: 257 GEEALALFVRMQR-EGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHL-MKSSQKLVGYVG 314

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
           N +++MY K G +  A +VF+ L   D +S ++++ G A +G G++A Q F  MI   + 
Sbjct: 315 NTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIE 374

Query: 310 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEA 369
           P+D+TF+++++ACSH  L+D+G   F  M   Y I P++ HYA +VD+ GRAGLL++A++
Sbjct: 375 PNDITFLSVLTACSHARLLDEGKHYFGLMRK-YNIEPKVSHYATIVDLLGRAGLLDQAKS 433

Query: 370 FIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADR 429
           FI EMPIE   ++WGALL A ++H+N EM     Q +        GT  L++N +A A R
Sbjct: 434 FIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIYASAGR 493

Query: 430 WEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           WED  K+R  ++  G+KK+  CSW+EV  S+
Sbjct: 494 WEDVAKVRKIMKDSGVKKEPACSWVEVENSV 524



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 95/284 (33%), Positives = 167/284 (58%), Gaps = 9/284 (3%)

Query: 87  SKCGFHKEAIDMF-CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
           SK G H   +D+  CG  ++P+     ++L  C+ L   K GK +H H L +  ++++++
Sbjct: 55  SKTGLH--VLDLIDCG-SLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVI 111

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            N++L  Y RCGSL     LF +MP R++VSWT+MI GYA+     +A+ +F  M  +  
Sbjct: 112 QNSLLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRM-LSDG 170

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
           AEPNE TL +++  C  +++ + G+ +H+    +Y    +  VG+++++MY +CG +G A
Sbjct: 171 AEPNEFTLSSLVKCCGYMASYNCGRQIHA-CCWKYGCHSNVFVGSSLVDMYARCGYLGEA 229

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
           + VF+ L  K+++SW+ +I+G A  G G +AL LF  M      P + T+ AL+S+CS  
Sbjct: 230 MLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSM 289

Query: 326 GLVDQGLILF-KAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
           G ++QG  L    M +  ++V  + +   ++ MY ++G + +AE
Sbjct: 290 GCLEQGKWLHAHLMKSSQKLVGYVGN--TLLHMYAKSGSIRDAE 331



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 125/234 (53%), Gaps = 4/234 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           MLS  +  N +T +  +K C     +    +IHA   +YG   ++F+ +SL+  Y     
Sbjct: 166 MLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGY 225

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           +  A  +F+ +   + VSW  +I+G ++ G  +EA+ +F  +     +P   T  ++LS+
Sbjct: 226 LGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSS 285

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           CSS+   + GK +HAH +++  +    + N +L  Y + GS+     +F K+ K +VVS 
Sbjct: 286 CSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSC 345

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKY 231
            +M+ GYA+ G  KEA   F EM +    EPN+ T ++VL+ACS    L  GK+
Sbjct: 346 NSMLIGYAQHGLGKEAAQQFDEMIRFG-IEPNDITFLSVLTACSHARLLDEGKH 398


>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240 [Vitis vinifera]
          Length = 565

 Score =  304 bits (778), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 167/459 (36%), Positives = 274/459 (59%), Gaps = 13/459 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +H+TF   LKACSL + +     +H  +++ G   D++   +LL  Y    D+ +A ++F
Sbjct: 104 DHFTFPFVLKACSLVNGYNLGQCVHNCIVKTGFEVDVYAATALLQMYAACGDMEAALKVF 163

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           + +   +VV+WT++I+G        EA+ ++  ++   V PN  T+V+VL AC+      
Sbjct: 164 DDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDMELWSVAPNEITMVNVLVACARSRDLN 223

Query: 126 LGKAIHAHS----LRNLNEN---NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWT 178
            G+ +H  +    L     N   N+IL  AI+D Y +CGSL +   LF KMP RN+V+W 
Sbjct: 224 AGRWVHDRTGQMGLDPFQSNSNFNVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWN 283

Query: 179 TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST 238
           +MIG Y + G   EA+ +F +M +    +P++AT + V+ AC+ + AL  G+ +H+Y+S 
Sbjct: 284 SMIGAYNQYGQANEALDLFSDM-RIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVS- 341

Query: 239 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQ 298
           + +L+    +G A+++MY K GD   A QVF+ L  KD  +W+++I GLAM+G G +AL 
Sbjct: 342 KTNLTDDTAIGTALVDMYAKSGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALT 401

Query: 299 LFSLMIIN-AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
            F  M  + A+ PD++T+I ++SACSH G V+ G   F +M  V+ I P  QHY C+VD+
Sbjct: 402 FFKKMQEDTALIPDEITYIGVLSACSHVGKVEDGKNHFISMKNVHGIEPTTQHYGCMVDL 461

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTF 417
             RAG L EAE  + +MP+E   ++W ALLN C+I++N ++ DR+R+ +   +    G +
Sbjct: 462 LSRAGRLGEAERLVEKMPVEPNTAIWSALLNGCKIYQNIDVADRVRRRVRELEVDGSGVY 521

Query: 418 ALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
            L+SN +AGA RWE+    R+ ++   ++K  G S +E+
Sbjct: 522 VLLSNIYAGACRWEEVKMARELMKERKIQKSLGHSSVEM 560



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 193/390 (49%), Gaps = 18/390 (4%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHF--YVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
            +H  +I    + D+   + L+ F  Y    ++  A  +FN +  P +  W ++I G S 
Sbjct: 23  RLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGYSI 82

Query: 89  CGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
                EA+ M+  +  K   P+  T   VL ACS +  + LG+ +H   ++   E ++  
Sbjct: 83  SESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCIVKTGFEVDVYA 142

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
             A+L  Y  CG + +   +F  +PK NVV+WT++I G        EAV V+++ME    
Sbjct: 143 ATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDMELWSV 202

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTR-YDLSVSN-----LVGNAVINMYVKC 259
           A PNE T+VNVL AC+    L+ G++VH        D   SN     ++  A+++MY KC
Sbjct: 203 A-PNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVILATAIVDMYAKC 261

Query: 260 GDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALI 319
           G +  A  +FN + +++ ++W+++I      G   +AL LFS M I    PD  TF+ +I
Sbjct: 262 GSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSDMRIAGFDPDKATFLCVI 321

Query: 320 SACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAE 379
            AC+H G +  G  L   +S    +         +VDMY ++G  E A+    E+  + +
Sbjct: 322 GACAHLGALVSGQALHAYVSKT-NLTDDTAIGTALVDMYAKSGDAERAQQVFSELQ-KKD 379

Query: 380 WSVWGALLNACRIHRNDE----MFDRIRQD 405
            + W +L+    +H + E     F ++++D
Sbjct: 380 VTAWTSLIIGLAMHGHGEEALTFFKKMQED 409


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  304 bits (778), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 154/452 (34%), Positives = 263/452 (58%), Gaps = 6/452 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L AC+ +H       +H + ++ G + +  + N+LL  Y    D  S +QIF ++
Sbjct: 513 TLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNM 572

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              +VVSWT +I+  ++ G   +   +   +    +KP+   + SVL   +   S K GK
Sbjct: 573 AQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGK 632

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
           ++H +++RN  E  + + NA+++ Y+ C ++     +F  +  ++++SW T+IGGY+   
Sbjct: 633 SVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNN 692

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
           F  E+ S+F +M    + +PN  T+  +L A +SIS+L  G+ +H+Y   R  L  S   
Sbjct: 693 FANESFSLFSDM--LLQFKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDS-YT 749

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            NA+++MYVKCG + +A  +F+ L  K+ ISW+ +I+G  M+GCG+ A+ LF  M  + V
Sbjct: 750 SNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGV 809

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD  +F A++ AC H GL  +G   F AM   Y+I P+++HY C+VD+    G L+EA 
Sbjct: 810 EPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAF 869

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
            FI  MPIE + S+W +LL+ CRIHR+ ++ +++   +   +  + G + L++N +A A+
Sbjct: 870 EFIESMPIEPDSSIWVSLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLLANIYAEAE 929

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           RWE   K++++I   GL++ TGCSWIEV   +
Sbjct: 930 RWEAVKKLKNKIGGRGLRENTGCSWIEVRGKV 961



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 170/341 (49%), Gaps = 7/341 (2%)

Query: 27  QKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGL 86
           +  L  H ++++ G      + N+L+ FY     I +A  +F+ +   D +SW ++ISG 
Sbjct: 427 RDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGC 486

Query: 87  SKCGFHKEAIDMFCGIDVKP---NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNI 143
           +  G + EAI++F  + ++    ++ TL+SVL AC+      +G+ +H +S++       
Sbjct: 487 TSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGET 546

Query: 144 ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
            L NA+LD Y  C    S   +F  M ++NVVSWT MI  Y   G   +   + QEM   
Sbjct: 547 SLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEM-VL 605

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
              +P+   + +VL   +   +L  GK VH Y + R  +     V NA++ MYV C ++ 
Sbjct: 606 DGIKPDVFAVTSVLHGFAGDESLKQGKSVHGY-AIRNGMEKLLPVANALMEMYVNCRNME 664

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
            A  VF+ +  KD ISW+T+I G + N    ++  LFS M++    P+ VT   ++ A +
Sbjct: 665 EARLVFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDMLLQ-FKPNTVTMTCILPAVA 723

Query: 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
               +++G  +  A +     +        +VDMY + G L
Sbjct: 724 SISSLERGREI-HAYALRRGFLEDSYTSNALVDMYVKCGAL 763



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 187/390 (47%), Gaps = 45/390 (11%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           IH  + + G      + N+L+  Y     +  A Q+F+S+   D +SW + ISG    G+
Sbjct: 220 IHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGW 279

Query: 92  HKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR-----NLNENNI 143
           H  A+D+F  +     + ++ T++SVL AC+ L    +GK +H +S++     +L     
Sbjct: 280 HDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQS 339

Query: 144 ILDNA----ILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIGGYAERGFCKEAVSVFQ 198
            +D A    ++  Y++CG + S   +F  MP K NV  W  ++GGYA+    +E++ +F+
Sbjct: 340 GIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFE 399

Query: 199 EMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVK 258
           +M +     P+E  L  +L   + +S    G   H Y+  +        V NA+I+ Y K
Sbjct: 400 QMHELG-ITPDEHALSCLLKCITCLSCARDGLVAHGYL-VKLGFGTQCAVCNALISFYAK 457

Query: 259 CGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIAL 318
              +  A+ VF+ + ++D ISW++VISG   NG   +A++LF  M +     D  T +++
Sbjct: 458 SNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSV 517

Query: 319 ISACS-----------HGGLVDQGLI----LFKAMSTVY----------EIVPQMQH--- 350
           + AC+           HG  V  GLI    L  A+  +Y          +I   M     
Sbjct: 518 LPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNV 577

Query: 351 --YACVVDMYGRAGLLEEAEAFIREMPIEA 378
             +  ++  Y RAGL ++    ++EM ++ 
Sbjct: 578 VSWTAMITSYTRAGLFDKVAGLLQEMVLDG 607



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 167/357 (46%), Gaps = 31/357 (8%)

Query: 55  YVTVKDIFSAHQIFNSVV--FPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPN 107
           Y+   D+  A  +F+ +     DV  WT+++S  +K G  +E + +F     CG  V P+
Sbjct: 140 YLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCG--VSPD 197

Query: 108 ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFV 167
           A+ +  VL   +SL S   G+ IH    +        + NA++  Y RCG +     +F 
Sbjct: 198 AHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFD 257

Query: 168 KMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 227
            M  R+ +SW + I GY   G+   AV +F +M  ++  E +  T+++VL AC+ +    
Sbjct: 258 SMHARDAISWNSTISGYFSNGWHDRAVDLFSKMW-SEGTEISSVTVLSVLPACAELGFEL 316

Query: 228 FGKYVHSYISTR---YDL-----SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS 279
            GK VH Y       +DL      +   +G+ ++ MYVKCGD+G A +VF+ +  K  + 
Sbjct: 317 VGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVH 376

Query: 280 -WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALIS-----ACSHGGLVDQGLI 333
            W+ ++ G A      ++L LF  M    + PD+     L+      +C+  GLV  G +
Sbjct: 377 VWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYL 436

Query: 334 LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 390
           +     T   +   +      +  Y ++ +++ A      MP +   S W ++++ C
Sbjct: 437 VKLGFGTQCAVCNAL------ISFYAKSNMIDNAVLVFDRMPHQDTIS-WNSVISGC 486



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 142/307 (46%), Gaps = 27/307 (8%)

Query: 101 GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII---LDNAILDFYIRCG 157
           G D      +  +V+  C       L  A  AH+L       II   L   ++  Y++CG
Sbjct: 87  GSDGGVGVRSYCAVVQLCGE--ERSLEAARRAHALVRAGTGGIIGSVLGKRLVLAYLKCG 144

Query: 158 SLASCGYLFVKMPKR--NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVN 215
            L     +F +MP R  +V  WT+++  YA+ G  +E VS+F++M+      P+   +  
Sbjct: 145 DLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCG-VSPDAHAVSC 203

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           VL   +S+ +++ G+ +H  +  +  L  +  V NA+I +Y +CG +  A+QVF+ +  +
Sbjct: 204 VLKCIASLGSITEGEVIHGLLE-KLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHAR 262

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS-----------H 324
           D ISW++ ISG   NG   +A+ LFS M         VT ++++ AC+           H
Sbjct: 263 DAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVH 322

Query: 325 GGLVDQGLI--LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
           G  +  GL+  L    S + E +        +V MY + G +  A      MP +    V
Sbjct: 323 GYSMKSGLLWDLESVQSGIDEALGSK-----LVFMYVKCGDMGSARRVFDAMPSKGNVHV 377

Query: 383 WGALLNA 389
           W  ++  
Sbjct: 378 WNLIMGG 384



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 3/113 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T T  L A +     ++  EIHA+ +  G L D +  N+L+  YV    +  A  +F
Sbjct: 711 NTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLF 770

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSAC 118
           + +   +++SWT +I+G    G  K+A+ +F    G  V+P+  +  ++L AC
Sbjct: 771 DRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYAC 823


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  304 bits (778), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 165/451 (36%), Positives = 264/451 (58%), Gaps = 7/451 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N++TF   LKAC           +H    +  +L ++F+   L+  Y+   D+  A Q+F
Sbjct: 245 NNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVF 304

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   DV+ W+ +I+  ++    +EAI+MFC +    V PN  TL S+L AC+SLV  +
Sbjct: 305 EEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQ 364

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG  IH H ++   + N+ + NA++D Y +CG + +   LF + P    VSW T+I GY 
Sbjct: 365 LGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYV 424

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSV 244
           + G  ++A+ +F++M +  + +  E T  +VL AC+ I+AL  G  +HS  + T YD   
Sbjct: 425 QAGNGEKALILFKDMLEC-QVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYD--K 481

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           + +VGNA+I+MY KCG++  A  VF+ML   D++SW+ +ISG +++G   +AL+ F  M+
Sbjct: 482 NTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESML 541

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
                PD VTF+ ++SACS+ GL+D+G   FK+M   Y+I P  +HY C+V + GR+G L
Sbjct: 542 ETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHL 601

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           ++A   + E+P E    VW ALL+AC IH + E+     Q ++  +     T  L+SN +
Sbjct: 602 DKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSNIY 661

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
           A A RW +   IR  ++R G++K+ G SWIE
Sbjct: 662 ANARRWGNVASIRTSMKRKGIRKEPGLSWIE 692



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/389 (27%), Positives = 203/389 (52%), Gaps = 9/389 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N + F+  LK    A   +    +HA V + G   D F+  +L+  Y        A Q+F
Sbjct: 144 NPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVF 203

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHK 125
           +++ + D+VSWT +++   +    +E++ +F  + +   KPN  T  SVL AC  L    
Sbjct: 204 DAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFN 263

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           +GKA+H  + +      + +   ++D YI+ G +     +F +MPK +V+ W+ MI  YA
Sbjct: 264 VGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYA 323

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +    +EA+ +F  M +     PN+ TL ++L AC+S+  L  G  +H ++  +  L ++
Sbjct: 324 QSEQSEEAIEMFCRMRRGL-VLPNQFTLASLLQACASLVDLQLGNQIHCHV-VKVGLDMN 381

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V NA+++MY KCG +  ++Q+F+       +SW+TVI G    G G +AL LF  M+ 
Sbjct: 382 VFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLE 441

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFK-AMSTVYEIVPQMQHYACVVDMYGRAGLL 364
             V   +VT+ +++ AC+    ++ G  +   ++ T+Y+    + +   ++DMY + G +
Sbjct: 442 CQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGN--ALIDMYAKCGNI 499

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIH 393
           ++A   + +M  E +   W A+++   +H
Sbjct: 500 KDAR-LVFDMLREHDQVSWNAMISGYSVH 527



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/374 (28%), Positives = 180/374 (48%), Gaps = 12/374 (3%)

Query: 8   YNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           +N Y +   L++C           +H  +I+ G+  D+F  N LL+FYV    +  A ++
Sbjct: 42  FNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKL 101

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSH 124
           F+ +   + VS+ T+I G S+C    EAI +F    G   + N     +VL    S    
Sbjct: 102 FDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWA 161

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           KLG ++HA   +   +++  +  A++D Y  CG       +F  +  +++VSWT M+  Y
Sbjct: 162 KLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACY 221

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS-YISTRYDLS 243
            E    +E++ +F  M +    +PN  T  +VL AC  +   + GK VH     T Y   
Sbjct: 222 VENECFEESLKLFSRM-RIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEE 280

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           +   VG  +I++Y+K GDV  A+QVF  +   D I WS +I+  A +    +A+++F  M
Sbjct: 281 L--FVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRM 338

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA--CVVDMYGRA 361
               V P+  T  +L+ AC+   LVD  L   +    V ++   M  +    ++DMY + 
Sbjct: 339 RRGLVLPNQFTLASLLQACA--SLVDLQLG-NQIHCHVVKVGLDMNVFVSNALMDMYAKC 395

Query: 362 GLLEEAEAFIREMP 375
           G +E +     E P
Sbjct: 396 GRMENSLQLFSESP 409



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 148/313 (47%), Gaps = 20/313 (6%)

Query: 106 PNANTLV--SVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCG 163
           P  NT +  S+L +C        GK +H   ++  N  ++  +N +L+FY++  SL    
Sbjct: 40  PEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAA 99

Query: 164 YLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI 223
            LF +MP RN VS+ T+I GY++     EA+ +F  ++     E N      VL    S 
Sbjct: 100 KLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGH-ELNPFVFSTVLKLLVSA 158

Query: 224 SALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTV 283
                G  VH+ +  +        VG A+I+ Y  CG    A QVF+ + YKD +SW+ +
Sbjct: 159 EWAKLGFSVHACV-YKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGM 217

Query: 284 ISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 343
           ++    N C  ++L+LFS M I    P++ TF +++ AC        GL +F     V+ 
Sbjct: 218 VACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACV-------GLEVFNVGKAVHG 270

Query: 344 IVPQMQHY------ACVVDMYGRAGLLEEAEAFIREMPIE--AEWSVWGA-LLNACRIHR 394
              +  +         ++D+Y ++G +++A     EMP +    WS   A    + +   
Sbjct: 271 CAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEE 330

Query: 395 NDEMFDRIRQDLV 407
             EMF R+R+ LV
Sbjct: 331 AIEMFCRMRRGLV 343



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML C       T++  L+AC+     +   +IH+  ++  +  +  + N+L+  Y    +
Sbjct: 439 MLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGN 498

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           I  A  +F+ +   D VSW  +ISG S  G + EA+  F  +   + KP+  T V +LSA
Sbjct: 499 IKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSA 558

Query: 118 CSS 120
           CS+
Sbjct: 559 CSN 561


>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
 gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
           Group]
 gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
 gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
          Length = 651

 Score =  304 bits (778), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 166/485 (34%), Positives = 266/485 (54%), Gaps = 38/485 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +H TF   LKAC+            AHV+  G   D+F+ N+  HF      +  A ++F
Sbjct: 124 DHLTFPFLLKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDARRLF 183

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID-----VKPNANTLVSVLSACSSLVS 123
           +     D+VSW T+I G  + G   EA+++F  +      V+P+  T+++ +S C  +  
Sbjct: 184 DRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRD 243

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            +LG+ +H     +     + L NA++D YI+CGSL     +F ++  R VVSWTTMI G
Sbjct: 244 LELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVG 303

Query: 184 YAERGF-------------------------------CKEAVSVFQEMEKTKEAEPNEAT 212
           +A+ G                                CKEA+S+F EM++     P+E T
Sbjct: 304 FAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVV-PDEIT 362

Query: 213 LVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 272
           +VN+L+ACS + AL  G +VH YI  ++ L  S  +G ++I+MY KCG++  AI +F  +
Sbjct: 363 MVNLLTACSQLGALEMGMWVHRYIE-KHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEI 421

Query: 273 AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL 332
             K+ ++W+ +I GLA +G   +A++ F  MI     PD++TFI ++SAC H GLV +G 
Sbjct: 422 PEKNALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGR 481

Query: 333 ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI 392
             F  M T Y +  +M+HY+C++D+ GRAG L+EAE  +  MP+E +  VWGA+  ACR+
Sbjct: 482 EFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMEPDAVVWGAIFFACRM 541

Query: 393 HRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCS 452
             N  + ++    LV       G + L++N +A A+  +  +K+R  +R +G++K  GCS
Sbjct: 542 QGNISLGEKAAMKLVEIDPSDSGIYVLLANMYAEANMRKKADKVRAMMRHLGVEKVPGCS 601

Query: 453 WIEVN 457
            IE+N
Sbjct: 602 CIELN 606



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 156/315 (49%), Gaps = 35/315 (11%)

Query: 105 KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGY 164
           +P+  T   +L AC+ L     G A  AH LR   ++++ + NA   F    G +     
Sbjct: 122 RPDHLTFPFLLKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDARR 181

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSI 223
           LF + P R++VSW T+IGGY  RG   EA+ +F  M  +     P+E T++  +S C  +
Sbjct: 182 LFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQM 241

Query: 224 SALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTV 283
             L  G+ +H ++ +   +S +  + NA+++MY+KCG + +A  VF  + ++  +SW+T+
Sbjct: 242 RDLELGRRLHGFVDSD-GVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTM 300

Query: 284 ISGLAMNG-----------------------------CG--RQALQLFSLMIINAVFPDD 312
           I G A  G                             C   ++AL LF  M   +V PD+
Sbjct: 301 IVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDE 360

Query: 313 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIR 372
           +T + L++ACS  G ++ G+ + + +   + +V  +     ++DMY + G +E+A    +
Sbjct: 361 ITMVNLLTACSQLGALEMGMWVHRYIEK-HRLVFSVALGTSLIDMYAKCGNIEKAIHIFK 419

Query: 373 EMPIEAEWSVWGALL 387
           E+P E     W A++
Sbjct: 420 EIP-EKNALTWTAMI 433



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 34/234 (14%)

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G  +  + +++ + ++  A P+  T   +L AC+ +    +G    +++  R  L     
Sbjct: 103 GVVRRCLPLYRALLRSGTARPDHLTFPFLLKACARLREWGYGDAALAHV-LRLGLDSDVF 161

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN- 306
           V NA  +     G +  A ++F+    +D +SW+T+I G    G   +AL+LF  M+   
Sbjct: 162 VVNAATHFLSIRGPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAED 221

Query: 307 -AVFPDDVTFIALISACSH----------GGLVDQGLI-----LFKAMSTVY-------- 342
             V PD+VT IA +S C             G VD   +     L  A+  +Y        
Sbjct: 222 AVVRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEM 281

Query: 343 --EIVPQMQH-----YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
              +  +++H     +  ++  + + GL+++A     EMP E +   W AL+  
Sbjct: 282 AKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMP-ERDVFPWNALMTG 334


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  304 bits (778), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 165/448 (36%), Positives = 265/448 (59%), Gaps = 7/448 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T T  + AC      +   E+H +VI+ G + ++ + NSL+  + +V     A  +F+ +
Sbjct: 298 TMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKM 357

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
            F D+VSWT +ISG  K G  ++A++ +  ++   V P+  T+ SVLSAC+ L     G 
Sbjct: 358 EFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGI 417

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H  + R    + +I+ N+++D Y +C  +     +F ++P +NV+SWT++I G     
Sbjct: 418 MLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNY 477

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
              EA+  FQ+M      +PN  TLV+VLSAC+ I ALS GK +H++ + R  L     +
Sbjct: 478 RSFEALFFFQQM--ILSLKPNSVTLVSVLSACARIGALSCGKEIHAH-ALRTGLGFDGFL 534

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            NA+++MYV+CG +  A   FN    KD  SW+ +++G A  G G  A++LF  MI + V
Sbjct: 535 PNALLDMYVRCGRMEPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAVELFHKMIESDV 593

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD++TF +L+ ACS  G+V  GL  F++M   + I P ++HYA VVD+ GRAG LE+A 
Sbjct: 594 NPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAY 653

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
            FI++MPI+ + ++WGALLNACRI++N E+ +   Q +      SVG + L+ N +A + 
Sbjct: 654 EFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSG 713

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           +W++  ++R  +R   L    GCSW+EV
Sbjct: 714 KWDEVARVRKIMRENRLTVDPGCSWVEV 741



 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 117/424 (27%), Positives = 220/424 (51%), Gaps = 18/424 (4%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S    T+   L+ C       +   +H++V +      + + N+LL  +V   D+  A  
Sbjct: 91  SVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWY 150

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVS 123
           +F  +   D+ SW  ++ G +K G+  EA++++     + ++P+  T   VL  C  L  
Sbjct: 151 VFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPD 210

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
              G+ +H H +R   E+++ + NA++  Y++CG + S   +F +MP+R+ +SW  MI G
Sbjct: 211 LARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISG 270

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDL 242
           Y E   C E + +F  M +    +P+  T+ +V+SAC ++     G+ VH Y I T +  
Sbjct: 271 YFENDVCLEGLRLFFMMREFF-VDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVA 329

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
            VS  V N++I M+   G    A  VF+ + +KD +SW+ +ISG   NG   +A++ +++
Sbjct: 330 EVS--VNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTI 387

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMS----TVYEIVPQMQHYACVVDMY 358
           M    V PD++T  +++SAC+  GL+D+G++L +       T Y IV        ++DMY
Sbjct: 388 MEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVAN-----SLIDMY 442

Query: 359 GRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI-HRNDEMFDRIRQDLVNKKGVSVGTF 417
            +   +++A      +P +   S W +++   R+ +R+ E     +Q +++ K  SV   
Sbjct: 443 SKCRCIDKALEVFHRIPNKNVIS-WTSIILGLRLNYRSFEALFFFQQMILSLKPNSVTLV 501

Query: 418 ALMS 421
           +++S
Sbjct: 502 SVLS 505



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 147/305 (48%), Gaps = 26/305 (8%)

Query: 96  IDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIR 155
           +D    + V     T +++L  C    +   G  +H++  + +    + L NA+L  ++R
Sbjct: 82  LDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVR 141

Query: 156 CGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVN 215
            G L    Y+F KM +R++ SW  ++GGYA+ G+  EA++++  M       P+  T   
Sbjct: 142 FGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVG-IRPDVYTFPC 200

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           VL  C  +  L+ G+ VH ++  RY       V NA+I MYVKCGD+  A  VF+ +  +
Sbjct: 201 VLRTCGGLPDLARGREVHLHV-IRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRR 259

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS-----------H 324
           D+ISW+ +ISG   N    + L+LF +M    V PD +T  ++ISAC            H
Sbjct: 260 DRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVH 319

Query: 325 GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 384
           G ++  G             V ++     ++ M+   G  +EAE    +M  + +   W 
Sbjct: 320 GYVIKTGF------------VAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFK-DLVSWT 366

Query: 385 ALLNA 389
           A+++ 
Sbjct: 367 AMISG 371



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 55/114 (48%), Gaps = 4/114 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L AC+         EIHAH +  G   D F+ N+LL  YV    +  A   F
Sbjct: 496 NSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQF 555

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 119
           NS    DV SW  +++G ++ G    A+++F  +   DV P+  T  S+L ACS
Sbjct: 556 NSCE-KDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACS 608


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  304 bits (778), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 164/453 (36%), Positives = 257/453 (56%), Gaps = 8/453 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +TF   LK+C   +   +  ++H  +I+ G   + F+  +L+  Y     +  A++IF
Sbjct: 135 NCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIF 194

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
             +   +VV+WT++I+G         A  +F   D+ P  + ++  +     +     G 
Sbjct: 195 CEMFERNVVAWTSMINGYILSADLVSARRLF---DLAPERDVVLWNIMVSGYIEG---GD 248

Query: 129 AIHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
            + A  L   +   +++  N +L  Y   G++ +   LF +MP+RN+ SW  +IGGYA  
Sbjct: 249 MVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHN 308

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G   E +  F+ M    +  PN+ATLV VLSAC+ + AL  GK+VH Y  +   L  +  
Sbjct: 309 GLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESS-GLKGNVY 367

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           VGNA+++MY KCG +  AI VF  +  KD ISW+T+I GLAM+  G  AL LF  M    
Sbjct: 368 VGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAG 427

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
             PD +TFI ++ AC+H GLV+ G   F++M+  Y I+PQ++HY C+VDM  RAG LE+A
Sbjct: 428 QKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQA 487

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
            AF+R+MP+EA+  +W  LL ACRI++N E+ +   Q L+  +  +   + ++SN +  A
Sbjct: 488 MAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDA 547

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            RWED  +++  +R  G KK  GCS IEVN ++
Sbjct: 548 GRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAV 580



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 175/389 (44%), Gaps = 27/389 (6%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           F   L++C  +   ++  +I A +I  G  ++ +I   L+    T+K +  A Q+F+ + 
Sbjct: 41  FISLLQSCKTS---KQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIP 97

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKLGKA 129
            P++  W ++  G ++   ++E + +F    G+D++PN  T   VL +C  + +   G+ 
Sbjct: 98  DPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQ 157

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           +H   ++     N  +   ++D Y   G++     +F +M +RNVV+WT+MI GY     
Sbjct: 158 VHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSAD 217

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
              A  +F        A   +  L N++ +      +  G  V +        +   +  
Sbjct: 218 LVSARRLFD------LAPERDVVLWNIMVS----GYIEGGDMVEARKLFHEMPNRDVMFW 267

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA-V 308
           N V+  Y   G+V     +F  +  ++  SW+ +I G A NG   + L  F  M+  + V
Sbjct: 268 NTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDV 327

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV----VDMYGRAGLL 364
            P+D T + ++SAC+  G +D G         VY     ++    V    +DMY + G++
Sbjct: 328 PPNDATLVTVLSACARLGALDLG-----KWVHVYAESSGLKGNVYVGNALMDMYAKCGII 382

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIH 393
           E A +  R M  +   S W  L+    +H
Sbjct: 383 ENAISVFRGMDTKDLIS-WNTLIGGLAMH 410


>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g40720-like [Vitis vinifera]
          Length = 854

 Score =  303 bits (777), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 154/443 (34%), Positives = 257/443 (58%), Gaps = 6/443 (1%)

Query: 22  LAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTT 81
           LA    K   +HAHVI+ G   D  + N+LL  Y  +  + S  +IF+ +   D++SW T
Sbjct: 369 LASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNT 428

Query: 82  IISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNL 138
           +I  L++     +A ++F  +   ++KPN+ T++S+L+AC  +     G++IH + +++ 
Sbjct: 429 MILALARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHS 488

Query: 139 NENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQ 198
            E N  L  A+ D Y+ CG  A+   LF   P R+++SW  MI  Y +     +A+ +F 
Sbjct: 489 IEINQPLRTALADMYMNCGDEATARDLFEGCPDRDLISWNAMIASYVKNNQAHKALLLFH 548

Query: 199 EMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR-YDLSVSNLVGNAVINMYV 257
            M    EAEPN  T++NVLS+ + ++ L  G+ +H+Y++ R + L +   + NA I MY 
Sbjct: 549 RM--ISEAEPNSVTIINVLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYA 606

Query: 258 KCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIA 317
           +CG +  A  +F  L  ++ ISW+ +I+G  MNG G  A+  FS M+ +   P+ VTF++
Sbjct: 607 RCGSLQSAENIFKTLPKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVS 666

Query: 318 LISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIE 377
           ++SACSH G ++ GL LF +M   + + P++ HY+C+VD+  R G ++EA  FI  MPIE
Sbjct: 667 VLSACSHSGFIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIE 726

Query: 378 AEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIR 437
            + SVW ALL++CR + + +    I + L   + ++ G + L+SN +A A  W +  +IR
Sbjct: 727 PDASVWRALLSSCRAYSDAKQAKTIFEKLDKLEPMNAGNYVLLSNVYATAGLWLEVRRIR 786

Query: 438 DEIRRMGLKKKTGCSWIEVNPSI 460
             ++  GL+K  G SWI V   +
Sbjct: 787 TWLKEKGLRKPPGISWIIVKNQV 809



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/380 (29%), Positives = 199/380 (52%), Gaps = 8/380 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML     ++  T   A++AC+     +   +IH   I++  + D++I N+LL+ Y     
Sbjct: 246 MLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGS 305

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           + S+HQ+F SV   D   W ++IS  +  G H+EA+D+F  +    VK +  T+V +LS 
Sbjct: 306 LESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSM 365

Query: 118 CSSLVSHKL-GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
           C  L S  L GK++HAH +++    +  L NA+L  Y     + S   +F +M   +++S
Sbjct: 366 CEELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIIS 425

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           W TMI   A      +A  +F+ M ++ E +PN  T++++L+AC  ++ L FG+ +H Y+
Sbjct: 426 WNTMILALARNTLRAQACELFERMRES-EIKPNSYTIISILAACEDVTCLDFGRSIHGYV 484

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
             ++ + ++  +  A+ +MY+ CGD   A  +F     +D ISW+ +I+    N    +A
Sbjct: 485 -MKHSIEINQPLRTALADMYMNCGDEATARDLFEGCPDRDLISWNAMIASYVKNNQAHKA 543

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV-YEIVPQMQHYACVV 355
           L LF  MI  A  P+ VT I ++S+ +H   + QG  L   ++   + +   +      +
Sbjct: 544 LLLFHRMISEAE-PNSVTIINVLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFI 602

Query: 356 DMYGRAGLLEEAEAFIREMP 375
            MY R G L+ AE   + +P
Sbjct: 603 TMYARCGSLQSAENIFKTLP 622



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 167/320 (52%), Gaps = 7/320 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N+ T    LKAC+  +  ++   IH  +     + D+ +  +++ FY     +  A  +F
Sbjct: 52  NNTTLPLVLKACAAQNAVERGKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVF 111

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           +++   DVV W  ++ G    G ++EA+ +   +   +++PN+ T+V++L AC      +
Sbjct: 112 DAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELR 171

Query: 126 LGKAIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           LG+ +H + LRN + ++N  +  A++ FY+R   +     LF  M  RN+VSW  MI GY
Sbjct: 172 LGRGVHGYCLRNGMFDSNPHVATALIGFYLRF-DMRVLPLLFDLMVVRNIVSWNAMISGY 230

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
            + G   +A+ +F +M    E + +  T++  + AC+ + +L  GK +H  ++ +++   
Sbjct: 231 YDVGDYFKALELFVQM-LVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQ-LAIKFEFVE 288

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
              + NA++NMY   G +  + Q+F  +  +D   W+++IS  A  GC  +A+ LF  M 
Sbjct: 289 DLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQ 348

Query: 305 INAVFPDDVTFIALISACSH 324
              V  D+ T + ++S C  
Sbjct: 349 SEGVKKDERTVVIMLSMCEE 368



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 174/328 (53%), Gaps = 8/328 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLH-DIFIQNSLLHFYVTVKDIFSAHQI 67
           N  T    L AC  A   +    +H + +  G    +  +  +L+ FY+   D+     +
Sbjct: 153 NSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRF-DMRVLPLL 211

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSH 124
           F+ +V  ++VSW  +ISG    G + +A+++F  +   +VK +  T++  + AC+ L S 
Sbjct: 212 FDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSL 271

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           KLGK IH  +++     ++ + NA+L+ Y   GSL S   LF  +P R+   W +MI  Y
Sbjct: 272 KLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAY 331

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI-SALSFGKYVHSYISTRYDLS 243
           A  G  +EA+ +F  M+ ++  + +E T+V +LS C  + S L  GK +H+++  +  + 
Sbjct: 332 AAFGCHEEAMDLFIRMQ-SEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHV-IKSGMR 389

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           +   +GNA+++MY +   V    ++F+ +   D ISW+T+I  LA N    QA +LF  M
Sbjct: 390 IDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERM 449

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQG 331
             + + P+  T I++++AC     +D G
Sbjct: 450 RESEIKPNSYTIISILAACEDVTCLDFG 477



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 148/288 (51%), Gaps = 4/288 (1%)

Query: 102 IDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLAS 161
           + V PN  TL  VL AC++  + + GK+IH         +++ +  A++DFY +CG +  
Sbjct: 47  LGVLPNNTTLPLVLKACAAQNAVERGKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVED 106

Query: 162 CGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221
              +F  M  R+VV W  M+ GY   G  +EA+ + +EM + +   PN  T+V +L AC 
Sbjct: 107 ARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGR-ENLRPNSRTMVALLLACE 165

Query: 222 SISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWS 281
             S L  G+ VH Y         +  V  A+I  Y++  D+ +   +F+++  ++ +SW+
Sbjct: 166 GASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRF-DMRVLPLLFDLMVVRNIVSWN 224

Query: 282 TVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 341
            +ISG    G   +AL+LF  M+++ V  D VT +  + AC+  G +  G  + + ++  
Sbjct: 225 AMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQ-LAIK 283

Query: 342 YEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           +E V  +     +++MY   G LE +      +P   +  +W ++++A
Sbjct: 284 FEFVEDLYILNALLNMYSNNGSLESSHQLFESVP-NRDAPLWNSMISA 330



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 6/156 (3%)

Query: 167 VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 226
           +K PK     W ++I   A     +  +S + +ME      PN  TL  VL AC++ +A+
Sbjct: 15  IKDPKH----WNSVIKHQANLKNDQAILSAYTQMESLG-VLPNNTTLPLVLKACAAQNAV 69

Query: 227 SFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
             GK +H  I    DL     VG AV++ Y KCG V  A  VF+ ++ +D + W+ ++ G
Sbjct: 70  ERGKSIHRSIQGT-DLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYG 128

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
               GC  +A+ L   M    + P+  T +AL+ AC
Sbjct: 129 YVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLAC 164


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  303 bits (777), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 165/448 (36%), Positives = 265/448 (59%), Gaps = 7/448 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T T  + AC      +   E+H +VI+ G + ++ + NSL+  + +V     A  +F+ +
Sbjct: 298 TMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKM 357

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
            F D+VSWT +ISG  K G  ++A++ +  ++   V P+  T+ SVLSAC+ L     G 
Sbjct: 358 EFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGI 417

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H  + R    + +I+ N+++D Y +C  +     +F ++P +NV+SWT++I G     
Sbjct: 418 MLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNY 477

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
              EA+  FQ+M      +PN  TLV+VLSAC+ I ALS GK +H++ + R  L     +
Sbjct: 478 RSFEALFFFQQM--ILSLKPNSVTLVSVLSACARIGALSCGKEIHAH-ALRTGLGFDGFL 534

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            NA+++MYV+CG +  A   FN    KD  SW+ +++G A  G G  A++LF  MI + V
Sbjct: 535 PNALLDMYVRCGRMEPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAVELFHKMIESDV 593

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD++TF +L+ ACS  G+V  GL  F++M   + I P ++HYA VVD+ GRAG LE+A 
Sbjct: 594 NPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAY 653

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
            FI++MPI+ + ++WGALLNACRI++N E+ +   Q +      SVG + L+ N +A + 
Sbjct: 654 EFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSG 713

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           +W++  ++R  +R   L    GCSW+EV
Sbjct: 714 KWDEVARVRKIMRENRLTVDPGCSWVEV 741



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 117/424 (27%), Positives = 220/424 (51%), Gaps = 18/424 (4%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S    T+   L+ C       +   +H++V +      + + N+LL  +V   D+  A  
Sbjct: 91  SVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWY 150

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVS 123
           +F  +   D+ SW  ++ G +K G+  EA++++     + ++P+  T   VL  C  L  
Sbjct: 151 VFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPD 210

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
              G+ +H H +R   E+++ + NA++  Y++CG + S   +F +MP+R+ +SW  MI G
Sbjct: 211 LARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISG 270

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDL 242
           Y E   C E + +F  M +    +P+  T+ +V+SAC ++     G+ VH Y I T +  
Sbjct: 271 YFENDVCLEGLRLFFMMREFF-VDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVA 329

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
            VS  V N++I M+   G    A  VF+ + +KD +SW+ +ISG   NG   +A++ +++
Sbjct: 330 EVS--VNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTI 387

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMS----TVYEIVPQMQHYACVVDMY 358
           M    V PD++T  +++SAC+  GL+D+G++L +       T Y IV        ++DMY
Sbjct: 388 MEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVAN-----SLIDMY 442

Query: 359 GRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI-HRNDEMFDRIRQDLVNKKGVSVGTF 417
            +   +++A      +P +   S W +++   R+ +R+ E     +Q +++ K  SV   
Sbjct: 443 SKCRCIDKALEVFHRIPNKNVIS-WTSIILGLRLNYRSFEALFFFQQMILSLKPNSVTLV 501

Query: 418 ALMS 421
           +++S
Sbjct: 502 SVLS 505



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 147/305 (48%), Gaps = 26/305 (8%)

Query: 96  IDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIR 155
           +D    + V     T +++L  C    +   G  +H++  + +    + L NA+L  ++R
Sbjct: 82  LDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVR 141

Query: 156 CGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVN 215
            G L    Y+F KM +R++ SW  ++GGYA+ G+  EA++++  M       P+  T   
Sbjct: 142 FGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVG-IRPDVYTFPC 200

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           VL  C  +  L+ G+ VH ++  RY       V NA+I MYVKCGD+  A  VF+ +  +
Sbjct: 201 VLRTCGGLPDLARGREVHLHV-IRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRR 259

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS-----------H 324
           D+ISW+ +ISG   N    + L+LF +M    V PD +T  ++ISAC            H
Sbjct: 260 DRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVH 319

Query: 325 GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 384
           G ++  G             V ++     ++ M+   G  +EAE    +M  + +   W 
Sbjct: 320 GYVIKTGF------------VAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFK-DLVSWT 366

Query: 385 ALLNA 389
           A+++ 
Sbjct: 367 AMISG 371



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 55/114 (48%), Gaps = 4/114 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L AC+         EIHAH +  G   D F+ N+LL  YV    +  A   F
Sbjct: 496 NSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQF 555

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 119
           NS    DV SW  +++G ++ G    A+++F  +   DV P+  T  S+L ACS
Sbjct: 556 NSCE-KDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACS 608


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 164/453 (36%), Positives = 257/453 (56%), Gaps = 8/453 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +TF   LK+C   +   +  ++H  +I+ G   + F+  +L+  Y     +  A++IF
Sbjct: 198 NCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIF 257

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
             +   +VV+WT++I+G         A  +F   D+ P  + ++  +     +     G 
Sbjct: 258 CEMFERNVVAWTSMINGYILSADLVSARRLF---DLAPERDVVLWNIMVSGYIEG---GD 311

Query: 129 AIHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
            + A  L   +   +++  N +L  Y   G++ +   LF +MP+RN+ SW  +IGGYA  
Sbjct: 312 MVEARKLFXEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHN 371

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G   E +  F+ M    +  PN+ATLV VLSAC+ + AL  GK+VH Y  +   L  +  
Sbjct: 372 GLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESS-GLKGNVY 430

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           VGNA+++MY KCG +  AI VF  +  KD ISW+T+I GLAM+  G  AL LF  M    
Sbjct: 431 VGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAG 490

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
             PD +TFI ++ AC+H GLV+ G   F++M+  Y I+PQ++HY C+VDM  RAG LE+A
Sbjct: 491 QKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQA 550

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
            AF+R+MP+EA+  +W  LL ACRI++N E+ +   Q L+  +  +   + ++SN +  A
Sbjct: 551 XAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDA 610

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            RWED  +++  +R  G KK  GCS IEVN ++
Sbjct: 611 GRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAV 643



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/403 (23%), Positives = 179/403 (44%), Gaps = 33/403 (8%)

Query: 5   PSSYNHYTFT------QALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV 58
           P+   H   T      + +++C  +   ++  +I A +I  G  ++ +I   L+    T+
Sbjct: 90  PTGGGHLRLTALRCLRENMRSCKTS---KQVHQIQAQIIANGFQYNEYITPKLVTICATL 146

Query: 59  KDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVL 115
           K +  A Q+F+ +  P++  W ++  G ++   ++E + +F    G+D++PN  T   VL
Sbjct: 147 KRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVL 206

Query: 116 SACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVV 175
            +C  + +   G+ +H   ++     N  +   ++D Y   G++     +F +M +RNVV
Sbjct: 207 KSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVV 266

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           +WT+MI GY        A  +F        A   +  L N++ +      +  G  V + 
Sbjct: 267 AWTSMINGYILSADLVSARRLFD------LAPERDVVLWNIMVS----GYIEGGDMVEAR 316

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
                  +   +  N V+  Y   G+V     +F  +  ++  SW+ +I G A NG   +
Sbjct: 317 KLFXEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFE 376

Query: 296 ALQLFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
            L  F  M+  + V P+D T + ++SAC+  G +D G         VY     ++    V
Sbjct: 377 VLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLG-----KWVHVYAESSGLKGNVYV 431

Query: 355 ----VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
               +DMY + G++E A +  R M  +   S W  L+    +H
Sbjct: 432 GNALMDMYAKCGIIENAISVFRGMDTKDLIS-WNTLIGGLAMH 473


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 162/495 (32%), Positives = 284/495 (57%), Gaps = 36/495 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML+     + +TF   LK  +     Q    +  H +++G   ++F+Q + +H +   + 
Sbjct: 98  MLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRL 157

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           +  A ++F+     +VV+W  ++SG ++    K++  +F  ++   V PN+ TLV +LSA
Sbjct: 158 VDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSA 217

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSL------------------ 159
           CS L   + GK I+ +    + E N+IL+N ++D +  CG +                  
Sbjct: 218 CSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISW 277

Query: 160 -------ASCGYL------FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
                  A+ G +      F ++P+R+ VSWT MI GY       EA+++F+EM+ +   
Sbjct: 278 TSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSN-V 336

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
           +P+E T+V++L+AC+ + AL  G++V +YI  +  +     VGNA+I+MY KCG+VG A 
Sbjct: 337 KPDEFTMVSILTACAHLGALELGEWVKTYID-KNSIKNDTFVGNALIDMYFKCGNVGKAK 395

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
           +VF  + +KDK +W+ +I GLA+NG G +AL +FS MI  ++ PD++T+I ++ AC+H G
Sbjct: 396 KVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAG 455

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 386
           +V++G   F +M+  + I P + HY C+VD+ GRAG LEEA   I  MP++    VWG+L
Sbjct: 456 MVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSL 515

Query: 387 LNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446
           L ACR+H+N ++ +   + ++  +  +   + L+ N +A   RWE+  ++R  +   G+K
Sbjct: 516 LGACRVHKNVQLAEMAAKQILELEPENGAVYVLLCNIYAACKRWENLRQVRKLMMERGIK 575

Query: 447 KKTGCSWIEVNPSIF 461
           K  GCS +E+N +++
Sbjct: 576 KTPGCSLMELNGNVY 590



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 199/405 (49%), Gaps = 44/405 (10%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHF---YVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS 87
           +IH+H I+ G   D   Q  ++ F   + + K I+ A Q+F+++  P +  W T+I G S
Sbjct: 25  QIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIY-ARQVFDAIPQPTLFIWNTMIKGYS 83

Query: 88  KCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
           +    +  + M+      ++KP+  T   +L   +  ++ + GK +  H++++  ++N+ 
Sbjct: 84  RINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFDSNLF 143

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           +  A +  +  C  +     +F       VV+W  M+ GY      K++  +F EMEK +
Sbjct: 144 VQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEK-R 202

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV-GNAVINMYVKCGDVG 263
              PN  TLV +LSACS +  L  GK+++ YI+    +   NL+  N +I+M+  CG++ 
Sbjct: 203 GVSPNSVTLVLMLSACSKLKDLEGGKHIYKYING--GIVERNLILENVLIDMFAACGEMD 260

Query: 264 IAIQVFNMLAYKDKISWSTVISGLA--------------------------MNGCGR--- 294
            A  VF+ +  +D ISW+++++G A                          ++G  R   
Sbjct: 261 EAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNR 320

Query: 295 --QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
             +AL LF  M ++ V PD+ T +++++AC+H G ++ G  + K       I        
Sbjct: 321 FIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWV-KTYIDKNSIKNDTFVGN 379

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
            ++DMY + G + +A+   +EM  + +++ W A++    I+ + E
Sbjct: 380 ALIDMYFKCGNVGKAKKVFKEMHHKDKFT-WTAMIVGLAINGHGE 423


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 152/453 (33%), Positives = 266/453 (58%), Gaps = 8/453 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YT+    KAC+     +K  E+H  ++  G+  D F+Q+SLL+FY+   +I +A Q+F
Sbjct: 104 DKYTYPFVFKACASQFAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVF 163

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSH 124
           +     DVV W  +I+G ++ G   ++  +F  +    +V+PN  T++ ++ AC    + 
Sbjct: 164 DEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNL 223

Query: 125 KLGKAIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
           KLG+AIH + ++++     + L+ A+++ Y++CG L     LF ++P++N V W ++I G
Sbjct: 224 KLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICG 283

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           Y + G   E + + +EM  +   +P+  T+  VLSAC+ + A + G +VH +   +    
Sbjct: 284 YCQIGSLNEVIELLREMHLSN-LKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGIWD 342

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           V   +G A+I+MY KCG +G A +VF+ +  ++  +W+ ++SG A +G    A++LFS M
Sbjct: 343 V--FIGTALIDMYAKCGFIGAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEM 400

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
             +   PD +TF+A++ AC+H GLV+ G   F  M   Y+I P+++HY C+VD+ GRAGL
Sbjct: 401 RESGARPDSITFLAVLHACAHSGLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGL 460

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           L+EA   I+ M +E    VWGALL+AC IH N E+ +     ++    +  G++ +++N 
Sbjct: 461 LQEARELIKMMVVEPNVVVWGALLSACSIHGNIEIGEWAAHHMIKLNAMDGGSYVILANL 520

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           +A A R+     +R+ +   G+ K  GCS IE+
Sbjct: 521 YASAQRFNRVKAVREMMVEKGICKSHGCSMIEI 553



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 187/388 (48%), Gaps = 15/388 (3%)

Query: 27  QKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGL 86
           Q+  +IHA  I     +  FI   +++ +++   +  A Q+FN    PD   +  +I   
Sbjct: 20  QQLKQIHAKSIISSLSYTQFIITKIINSFLSHACLDYATQVFNQTQEPDGFIYNAMIRAY 79

Query: 87  SKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN 142
           S       AI ++  +    ++  +  T   V  AC+S  + + GK +H   +R   E +
Sbjct: 80  SSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKEVHGVIVRIGYELD 139

Query: 143 IILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202
             L +++L+FY+ CG + +   +F +   ++VV W  +I GYA +G   ++  VF+EM +
Sbjct: 140 GFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMVE 199

Query: 203 TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 262
            KE  PNE T++ ++ AC     L  G+ +H Y+     L     +  A+IN+YVKCG +
Sbjct: 200 VKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYL 259

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
             A ++F+ +  K+ + W+++I G    G   + ++L   M ++ + PD  T   ++SAC
Sbjct: 260 DGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSAC 319

Query: 323 SHGGLVDQG--LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 380
           +  G  + G  +  F     ++++         ++DMY + G +  A     +M  E   
Sbjct: 320 AQMGAFNLGNWVHRFAEKKGIWDVFIG----TALIDMYAKCGFIGAARKVFDQMN-ERNV 374

Query: 381 SVWGALLNACRIHRND----EMFDRIRQ 404
           + W A+L+    H       E+F  +R+
Sbjct: 375 ATWNAILSGYASHGQAESAIELFSEMRE 402



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 139/298 (46%), Gaps = 4/298 (1%)

Query: 109 NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168
            T  SVL+   +  + +  K IHA S+ +       +   I++ ++    L     +F +
Sbjct: 4   QTPKSVLALIETCTNIQQLKQIHAKSIISSLSYTQFIITKIINSFLSHACLDYATQVFNQ 63

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
             + +   +  MI  Y+       A+S++ +M   +    ++ T   V  AC+S  A+  
Sbjct: 64  TQEPDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEK 123

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
           GK VH  I  R    +   + ++++N Y+ CG++G A QVF+    KD + W+ +I+G A
Sbjct: 124 GKEVHGVI-VRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYA 182

Query: 289 MNGCGRQALQLFSLMI-INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 347
             G    +  +F  M+ +  V P++ T + LI AC     +  G  +   M     +   
Sbjct: 183 RQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREG 242

Query: 348 MQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL-NACRIHRNDEMFDRIRQ 404
           ++  A ++++Y + G L+ A     E+P E    VW +L+   C+I   +E+ + +R+
Sbjct: 243 VKLEAALINLYVKCGYLDGARKLFDEIP-EKNTVVWNSLICGYCQIGSLNEVIELLRE 299


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 164/453 (36%), Positives = 259/453 (57%), Gaps = 5/453 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T +  L  C +      AL +H + +++G   ++F+ N+L+  Y  +  +  AH +F  +
Sbjct: 170 TLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGM 229

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              D+V+W +IIS   + G    A+++F G+    V P+  TLVS+ SA +        K
Sbjct: 230 ALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAK 289

Query: 129 AIHAH-SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           ++H +   R  +  +II  NA++D Y +   + +   +F  +P R+VVSW T+I GY + 
Sbjct: 290 SVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQN 349

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G   EA+ ++ +M   +  +P + T V+VL A S +  L  G  +H+ +S +  L++   
Sbjct: 350 GLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHA-LSIKTGLNLDVY 408

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V   +I++Y KCG +  A+ +F  +  +    W+ +I+GL ++G G +AL LFS M    
Sbjct: 409 VTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEE 468

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           + PD VTF++L++ACSH GLVDQG   F  M TVY IVP  +HY C+VDM GRAG L+EA
Sbjct: 469 IKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEA 528

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
             FI+ MPI+ + +VWGALL ACRIH N EM     Q+L      +VG + LMSN +A  
Sbjct: 529 FEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKI 588

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            +W+  + +R  +RR  L+K  G S +EV  S+
Sbjct: 589 GKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSV 621



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/419 (26%), Positives = 212/419 (50%), Gaps = 17/419 (4%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLH-DIFIQNSLLHFYVTVKDIFS 63
           P   + +TF   ++A   A     A ++HA  +  G LH ++F   SL+H Y+    +  
Sbjct: 64  PLRPDSFTFPPLVRA---APGPASAAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAE 120

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSS 120
           A+++F+ +   DV +W  ++SGL +     +A+ +     G  V  +A TL SVL  C  
Sbjct: 121 AYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVV 180

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           L    L   +H +++++     + + NA++D Y + G L    ++F  M  R++V+W ++
Sbjct: 181 LGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSI 240

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR- 239
           I    + G    AV +F  M ++    P+  TLV++ SA +        K VH Y+  R 
Sbjct: 241 ISANEQGGKVAAAVELFHGMMESGVC-PDVLTLVSLASAVAQCGDELGAKSVHCYVRRRG 299

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
           +D+    + GNA+++MY K   +  A +VF+ L  +D +SW+T+I+G   NG   +A+++
Sbjct: 300 WDVG-DIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRI 358

Query: 300 FSLMIIN-AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMY 358
           ++ M  +  + P   TF++++ A S+ G + QG+ +  A+S    +   +    C++D+Y
Sbjct: 359 YNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRM-HALSIKTGLNLDVYVTTCLIDLY 417

Query: 359 GRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQDLVNKKGVS 413
            + G L EA      MP  +    W A++    +H +      +F +++Q+ +    V+
Sbjct: 418 AKCGKLVEAMFLFEHMPRRST-GPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVT 475


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 163/451 (36%), Positives = 263/451 (58%), Gaps = 7/451 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           NH+TF   LKAC           +H  V++  +  D+++   LL  Y    D     ++F
Sbjct: 141 NHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVF 200

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   DV+ W+ +IS  ++    +EA+++F  +    V PN  T  SVL +C+S+ + +
Sbjct: 201 EEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQ 260

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LGK +H H L+   + N+ + NA++D Y +CG L +   LF+++P RN V+W TMI GY 
Sbjct: 261 LGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYV 320

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSV 244
           + G   +A+S+++ M +  + + +E T  +VL AC+S++A+  G  +HS  + T YD  V
Sbjct: 321 QSGDGDKALSLYKNMLEC-QVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDV 379

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
             +VGNA+I+MY KCG +  A  VF+ML+ +D+ISW+ +ISG +M+G   +AL+ F +M 
Sbjct: 380 --VVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQ 437

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
                P+ +TF++++SACS+ GL+D G   FK+M   Y I P M+HY C+V + GR+G L
Sbjct: 438 ETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHL 497

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           ++A   I E+P+E    VW ALL AC IH + ++     Q ++        T  L+SN +
Sbjct: 498 DKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNIY 557

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
           A   RW     +R  ++  G+KK+ G SWIE
Sbjct: 558 ARTRRWNSVASVRKFMKNKGVKKEPGLSWIE 588



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 206/389 (52%), Gaps = 9/389 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N + FT  LK        + A  +HA + + GH  + F+  +L+  Y     + SA Q F
Sbjct: 40  NPFVFTTILKLLVSVECAELAYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAF 99

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHK 125
           +++   D+VSWT +++  ++    ++++ +F  + +    PN  T   VL AC  L +  
Sbjct: 100 DAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFS 159

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           +GK++H   L+   E ++ +   +LD Y + G       +F +MPK +V+ W+ MI  YA
Sbjct: 160 VGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYA 219

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +    +EAV +F +M +     PN+ T  +VL +C+SI  L  GK VH ++  +  L  +
Sbjct: 220 QSNQSREAVELFGQMRRAF-VLPNQFTFASVLQSCASIENLQLGKQVHCHV-LKVGLDGN 277

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V NA++++Y KCG +  ++++F  L  +++++W+T+I G   +G G +AL L+  M+ 
Sbjct: 278 VFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLE 337

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFK-AMSTVYEIVPQMQHYACVVDMYGRAGLL 364
             V   +VT+ +++ AC+    ++ G  +   ++ T+Y+    +     ++DMY + G +
Sbjct: 338 CQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYD--KDVVVGNALIDMYAKCGSI 395

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIH 393
           + A   + +M  E +   W A+++   +H
Sbjct: 396 KNAR-LVFDMLSERDEISWNAMISGYSMH 423



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 97/215 (45%), Gaps = 19/215 (8%)

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           MP RN VS+ T+I GY +     E V +F  + +    E N      +L    S+     
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGH-ELNPFVFTTILKLLVSVECAEL 59

Query: 229 GKYVHSYISTRYDL--SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
              +H+ I   Y L    +  VG A+I+ Y  CG V  A Q F+ +A KD +SW+ +++ 
Sbjct: 60  AYSLHACI---YKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVAC 116

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 346
            A N   + +LQLF+ M +    P+  TF  ++ AC        GL  F    +V+  V 
Sbjct: 117 YAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACI-------GLEAFSVGKSVHGCVL 169

Query: 347 ----QMQHYACV--VDMYGRAGLLEEAEAFIREMP 375
               +M  Y  V  +D+Y + G   +      EMP
Sbjct: 170 KTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMP 204



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 3/123 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML C    +  T++  L+AC+     +   +IH+  ++  +  D+ + N+L+  Y     
Sbjct: 335 MLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGS 394

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           I +A  +F+ +   D +SW  +ISG S  G   EA+  F  +   +  PN  T VS+LSA
Sbjct: 395 IKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSA 454

Query: 118 CSS 120
           CS+
Sbjct: 455 CSN 457


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 159/490 (32%), Positives = 265/490 (54%), Gaps = 40/490 (8%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           YTF   + AC+     + A  IH  V++ G   D++I N+L+  Y    D+  A ++F  
Sbjct: 116 YTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEE 175

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---------DVKPNANTLVSVLSACSSL 121
           +   DVVSW ++ISG +  G+  EA++++              KP+  T+ S+L AC  L
Sbjct: 176 MPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHL 235

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
              + GK +H + + +  E +    N +++ Y +CG+L +   +F  M  ++ VSW +MI
Sbjct: 236 GDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMI 295

Query: 182 GGYAERGFCKEAVSVFQEME------------------------------KTKEAEPNEA 211
             Y + G   +++ VF+ M+                              +T+   P+ A
Sbjct: 296 NVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMA 355

Query: 212 TLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 271
           T++++L  CS ++A   GK +H  I  +  L     VGN +I MY KCG +  + QVF +
Sbjct: 356 TMLSILPVCSLLAAKRQGKEIHGCI-FKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKL 414

Query: 272 LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
           +  KD ++W+ +IS   M G G++A++ F  M    + PD V F+A+I ACSH GLV++G
Sbjct: 415 MKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEG 474

Query: 332 LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACR 391
           L  F  M   Y+I P+++HYACVVD+  R+ LL++AE FI  MP++ + S+WGALL+ACR
Sbjct: 475 LNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACR 534

Query: 392 IHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGC 451
           +  + E+ +R+ + ++       G + L+SN +A   +W+    IR  I+  GLKK  GC
Sbjct: 535 MSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGC 594

Query: 452 SWIEVNPSIF 461
           SW+E+   ++
Sbjct: 595 SWMEIQNKVY 604



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 181/347 (52%), Gaps = 19/347 (5%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           F+   +A + A    +  ++H+ +I  G  H +     L+  Y   +D  S+  +F  + 
Sbjct: 16  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFR-LA 74

Query: 73  FP--DVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLVSHKLG 127
            P  +V  W +II  L+  G   EA+ ++     I ++P+  T  SV++AC+ L+  ++ 
Sbjct: 75  SPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMA 134

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           K+IH   L     +++ + NA++D Y R   L     +F +MP R+VVSW ++I GY   
Sbjct: 135 KSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNAN 194

Query: 188 GFCKEAVSVFQE-----MEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYD 241
           G+  EA+ ++ +     ME   + +P+  T+ ++L AC  +  L FGKYVH Y I++ Y+
Sbjct: 195 GYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYE 254

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
              +    N +INMY KCG++  + +VF+ +  KD +SW+++I+    NG    +L++F 
Sbjct: 255 CDTT--ASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFE 312

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQM 348
               N    D +T+  +I++C H    + GL +   M T   + P M
Sbjct: 313 ----NMKARDIITWNTIIASCVHSEDCNLGLRMISRMRT-EGVTPDM 354


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 167/501 (33%), Positives = 269/501 (53%), Gaps = 45/501 (8%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    S N  TF   L +C+      +   IH+H+ E G   D+ + N+L+  Y     
Sbjct: 249 MLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNS 308

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFH-KEAIDMFCGI-------DVKPNANTLV 112
           +  A +IF+ +   DV+SW+ +I+G ++ G+  KE+ID    +        V PN  T +
Sbjct: 309 VQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFM 368

Query: 113 SVLSACSSLVSHKLGKAIHA----------HSLR---------------------NLNEN 141
           S+L AC++  + + G+ IHA           SL+                      +   
Sbjct: 369 SILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANK 428

Query: 142 NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME 201
           N++   + L  YI+CG L+S   +F +MP RNVVSW  MI GYA+ G   + V VF+ + 
Sbjct: 429 NVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNG---DIVKVFELLS 485

Query: 202 KTKEA--EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKC 259
             K    +P+  T++ +L AC +++ L  GK VH+  + +  L    +V  ++I MY KC
Sbjct: 486 SMKAEGFQPDRVTVITILEACGALAGLERGKLVHAE-AVKLGLESDTVVATSLIGMYSKC 544

Query: 260 GDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALI 319
           G V  A  VF+ ++ +D ++W+ +++G   +G G +A+ LF  M+   V P+++T  A+I
Sbjct: 545 GQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVI 604

Query: 320 SACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAE 379
           SACS  GLV +G  +F+ M   +++ P+ QHY C+VD+ GRAG L+EAE FI+ MP E +
Sbjct: 605 SACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPD 664

Query: 380 WSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDE 439
            SVW ALL AC+ H N ++ +R    ++  +      +  +SN +A A RW+D+ K+R  
Sbjct: 665 ISVWHALLGACKSHNNVQLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRV 724

Query: 440 IRRMGLKKKTGCSWIEVNPSI 460
           +   GLKK  G S IE++  I
Sbjct: 725 MDDRGLKKDRGESSIEIDGRI 745



 Score =  201 bits (512), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 117/375 (31%), Positives = 205/375 (54%), Gaps = 13/375 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T+   ++ C+ A   +    +H  + E G   DI++ NSL++FY   +D+ SA Q+F
Sbjct: 55  NSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVF 114

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHK 125
             +   DVV+W+++I+  +      +A D F      +++PN  T +S+L AC++    +
Sbjct: 115 RRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILE 174

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ IH        E ++ +  A++  Y +CG ++    +F KM +RNVVSWT +I   A
Sbjct: 175 KGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANA 234

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +     EA  ++++M +     PN  T V++L++C++  AL+ G+ +HS+IS R  L   
Sbjct: 235 QHRKLNEAFELYEQMLQAG-ISPNAVTFVSLLNSCNTPEALNRGRRIHSHISER-GLETD 292

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG-----RQALQLF 300
            +V NA+I MY KC  V  A ++F+ ++ +D ISWS +I+G A +G        +  QL 
Sbjct: 293 MIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLL 352

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV-YEIVPQMQHYACVVDMYG 359
             M    VFP+ VTF++++ AC+  G ++QG  +   +S V +E+   +Q    + +MY 
Sbjct: 353 ERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQ--TAIFNMYA 410

Query: 360 RAGLLEEAEAFIREM 374
           + G + EAE    +M
Sbjct: 411 KCGSIYEAEQVFSKM 425



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 124/448 (27%), Positives = 223/448 (49%), Gaps = 45/448 (10%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  TF   LKAC+     +K  +IH  V   G   D+ +  +L+  Y    +I  A ++F
Sbjct: 156 NRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVF 215

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           + +   +VVSWT II   ++     EA +++  +    + PNA T VS+L++C++  +  
Sbjct: 216 HKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALN 275

Query: 126 LGKAIHAH-SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
            G+ IH+H S R L E ++I+ NA++  Y +C S+     +F +M KR+V+SW+ MI GY
Sbjct: 276 RGRRIHSHISERGL-ETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGY 334

Query: 185 AERGFC-KEAV-SVFQEMEKTKEAE--PNEATLVNVLSACSSISALSFGKYVHSYIST-- 238
           A+ G+  KE++  VFQ +E+ +     PN+ T +++L AC++  AL  G+ +H+ +S   
Sbjct: 335 AQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVG 394

Query: 239 -RYDLSVSNLVGN---------------------------AVINMYVKCGDVGIAIQVFN 270
              D S+   + N                           + ++MY+KCGD+  A +VF+
Sbjct: 395 FELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFS 454

Query: 271 MLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQ 330
            +  ++ +SW+ +I+G A NG   +  +L S M      PD VT I ++ AC     +++
Sbjct: 455 EMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLER 514

Query: 331 GLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 390
           G  L  A +    +         ++ MY + G + EA     +M    +   W A+L   
Sbjct: 515 GK-LVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMS-NRDTVAWNAMLAGY 572

Query: 391 RIHRND----EMFDRIRQDLVNKKGVSV 414
             H +     ++F R+ ++ V+   +++
Sbjct: 573 GQHGDGLEAVDLFKRMLKERVSPNEITL 600



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 169/343 (49%), Gaps = 11/343 (3%)

Query: 86  LSKCGFHKEAIDMFCGIDVKP---NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN 142
           L K G  +EAI +   I  +    N+NT   V+  C+     + GK +H        E +
Sbjct: 31  LCKAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEID 90

Query: 143 IILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202
           I L N++++FY +   +AS   +F +M  R+VV+W++MI  YA      +A   F+ M  
Sbjct: 91  IYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTD 150

Query: 203 TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 262
               EPN  T +++L AC++ S L  G+ +H+ +     +     V  A+I MY KCG++
Sbjct: 151 AN-IEPNRITFLSILKACNNYSILEKGRKIHTIVKA-MGMETDVAVATALITMYSKCGEI 208

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
            +A +VF+ +  ++ +SW+ +I   A +    +A +L+  M+   + P+ VTF++L+++C
Sbjct: 209 SVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSC 268

Query: 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
           +    +++G  +   +S    +   M     ++ MY +   ++EA      M      S 
Sbjct: 269 NTPEALNRGRRIHSHISE-RGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVIS- 326

Query: 383 WGALLN--ACRIHRNDEMFDRIRQ--DLVNKKGVSVGTFALMS 421
           W A++   A   +++ E  D + Q  + + ++GV       MS
Sbjct: 327 WSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMS 369


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 162/454 (35%), Positives = 254/454 (55%), Gaps = 4/454 (0%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YTF   LK C+      +   IH  VI+ G   D  + NSL++ Y        A ++F
Sbjct: 190 NMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVF 249

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHK--EAIDMFCGIDVKPNANTLVSVLSACSSLVSHKL 126
             +   DVVSWT +I+G    G+       +        PN  T +S+L +CSSL    L
Sbjct: 250 GEIPERDVVSWTALITGFVAEGYGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDL 309

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           GK +HA  ++N  + N  +  A++D Y +   L     +F ++ KR++ +WT ++ GYA+
Sbjct: 310 GKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQ 369

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
            G  ++AV  F +M++ +  +PNE TL + LS CS I+ L  G+ +HS ++ +   S   
Sbjct: 370 DGQGEKAVKCFIQMQR-EGVKPNEFTLASSLSGCSRIATLDSGRQLHS-MAIKAGQSGDM 427

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            V +A+++MY KCG V  A  VF+ L  +D +SW+T+I G + +G G +AL+ F  M+  
Sbjct: 428 FVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDE 487

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
              PD+VTFI ++SACSH GL+++G   F ++S +Y I P ++HYAC+VD+ GRAG   E
Sbjct: 488 GTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHE 547

Query: 367 AEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAG 426
            E+FI EM + +   +W  +L AC++H N E  +R    L   +      + L+SN FA 
Sbjct: 548 VESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAA 607

Query: 427 ADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
              W+D   +R  +   G+KK+ GCSW+EVN  +
Sbjct: 608 KGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQV 641



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 103/363 (28%), Positives = 184/363 (50%), Gaps = 7/363 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N + F   + A +    +     IHA V +YG   DI I N+ +  Y+  + + +  Q F
Sbjct: 89  NQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFF 148

Query: 69  NSVVFPDVVSWTTIISGL---SKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHK 125
            +++  ++ S   ++SG      C      +        +PN  T +S+L  C+S     
Sbjct: 149 KAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLN 208

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GKAIH   +++    +  L N++++ Y +CGS      +F ++P+R+VVSWT +I G+ 
Sbjct: 209 EGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFV 268

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G+    + +F +M   +   PN  T +++L +CSS+S +  GK VH+ I  +  L  +
Sbjct: 269 AEGY-GSGLRIFNQM-LAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQI-VKNSLDGN 325

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
           + VG A+++MY K   +  A  +FN L  +D  +W+ +++G A +G G +A++ F  M  
Sbjct: 326 DFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQR 385

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             V P++ T  + +S CS    +D G  L  +M+        M   + +VDMY + G +E
Sbjct: 386 EGVKPNEFTLASSLSGCSRIATLDSGRQL-HSMAIKAGQSGDMFVASALVDMYAKCGCVE 444

Query: 366 EAE 368
           +AE
Sbjct: 445 DAE 447



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 176/357 (49%), Gaps = 12/357 (3%)

Query: 36  VIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEA 95
           VI+ G   D  + +SL++ YV  + +  A Q+   +   DV  W   +S  +     +EA
Sbjct: 15  VIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEA 74

Query: 96  IDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDF 152
           + +F  +    ++ N     S++SA +SL  +  G++IHA   +   E++I++ NA +  
Sbjct: 75  VQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTM 134

Query: 153 YIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEAT 212
           Y++  S+ +    F  M   N+ S   ++ G+ +   C +   +  ++   +  EPN  T
Sbjct: 135 YMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQL-LVEGFEPNMYT 193

Query: 213 LVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 272
            +++L  C+S   L+ GK +H  +  +  ++  + + N+++N+Y KCG    A +VF  +
Sbjct: 194 FISILKTCASKGDLNEGKAIHGQV-IKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEI 252

Query: 273 AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL 332
             +D +SW+ +I+G    G G   L++F+ M+     P+  TFI+++ +CS    VD G 
Sbjct: 253 PERDVVSWTALITGFVAEGYG-SGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGK 311

Query: 333 ILFKAMSTVYEIVPQMQHY--ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
              +  + + +       +    +VDMY +   LE+AE     + I+ +   W  ++
Sbjct: 312 ---QVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRL-IKRDLFAWTVIV 364


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 159/453 (35%), Positives = 272/453 (60%), Gaps = 7/453 (1%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           +   L  C      ++   +HAH+I+  +L  +++   L+  Y   + +  A  +F+ + 
Sbjct: 13  YNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMR 72

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKA 129
             +VVSWT +ISG S+ GF  EA+ +F  +   D +PN  T  +VLS+C+     +LG+ 
Sbjct: 73  ERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQ 132

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           IH+H  +   EN+I + +++LD Y + G +     +F  +P+R+VVS T +I GYA+ G 
Sbjct: 133 IHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 192

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
            +EA+ +F  +++ +    N  T  ++L+A S ++AL  GK VHS++  R +L    ++ 
Sbjct: 193 DEEALELFCRLQR-EGMSSNYVTYASLLTALSGLAALDHGKQVHSHV-LRCELPFYVVLQ 250

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII-NAV 308
           N++I+MY KCG++  A ++FN +  +  ISW+ ++ G + +G G + ++LF LM   N V
Sbjct: 251 NSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKV 310

Query: 309 FPDDVTFIALISACSHGGLVDQGLILF-KAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
            PD VTF+A++S CSHGGL D+GL +F + M+   EI   ++HY CV+D+ GRAG +EEA
Sbjct: 311 KPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEA 370

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
              I++MP E   ++WG+LL ACR+H N  + + +   L+  +  + G + ++SN +A A
Sbjct: 371 FELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASA 430

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            RWED   +R+ +    + K+ G SWIE++ +I
Sbjct: 431 GRWEDVRNVRELMMEKAVIKEPGRSWIELDQTI 463



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 122/224 (54%), Gaps = 3/224 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML   +  N +TF   L +C+     +   +IH+H+ +  + + IF+ +SLL  Y     
Sbjct: 102 MLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGR 161

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           I  A  +F  +   DVVS T IISG ++ G  +EA+++FC +    +  N  T  S+L+A
Sbjct: 162 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTA 221

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
            S L +   GK +H+H LR      ++L N+++D Y +CG+L     +F  MP R V+SW
Sbjct: 222 LSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISW 281

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221
             M+ GY++ G   E V +F+ M +  + +P+  T + VLS CS
Sbjct: 282 NAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCS 325


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 164/453 (36%), Positives = 248/453 (54%), Gaps = 37/453 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YTFT  LKAC+      +  ++H  V +YG   ++F++NSL+  Y  V     A ++F
Sbjct: 126 DEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLF 185

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
           + +V  DVVSW T+ISG    G   +A  +F G                           
Sbjct: 186 DEMVVRDVVSWNTLISGYCFSGMVDKARMVFDG--------------------------- 218

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
                    + E N++  + ++  Y R G+L     LF  MP RNVVSW  MI GYA+  
Sbjct: 219 ---------MMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNE 269

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
              +A+ +F++M+      PN+ TLV+VLSAC+ + AL  GK++H +I  R  + V   +
Sbjct: 270 KYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIR-RNKIEVGLFL 328

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
           GNA+ +MY KCG V  A  VF+ +  +D ISWS +I GLAM G   +A   F+ MI + +
Sbjct: 329 GNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGL 388

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            P+D++F+ L++AC+H GLVD+GL  F  M  VY I P+++HY CVVD+  RAG L++AE
Sbjct: 389 EPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAE 448

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
           + I  MP++    VWGALL  CRI+++ E  +R+   ++       G+   ++N +A   
Sbjct: 449 SLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMG 508

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           R +D    R  +R     K  GCSWIE+N S++
Sbjct: 509 RLDDAASCRLRMRDNKSMKTPGCSWIEINNSVY 541



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 160/377 (42%), Gaps = 53/377 (14%)

Query: 8   YNHYTFTQALKACSLAHPHQKALEIHAHVI--EYGHLHDIFIQNSLLHFYVTVKDIFSAH 65
           YNH      L  C+     ++  EI A +I      +    I    +    +  ++  + 
Sbjct: 19  YNHRKTIHLLLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSV 78

Query: 66  QIFNSVV-FPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN-----TLVSVLSACS 119
            IFN  + FP++ ++  ++   S+       I  F    V PNA      T  SVL AC+
Sbjct: 79  LIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACA 138

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
            L     G+ +H    +   E+N+ + N+++D Y + G       LF +M  R+VVSW T
Sbjct: 139 GLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNT 198

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           +I GY   G   +A  VF  M +                                     
Sbjct: 199 LISGYCFSGMVDKARMVFDGMME------------------------------------- 221

Query: 240 YDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQ 298
                 NLV  + +I+ Y + G++  A Q+F  +  ++ +SW+ +I+G A N     A++
Sbjct: 222 -----KNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIE 276

Query: 299 LFSLMI-INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
           LF  M     + P+DVT ++++SAC+H G +D G  + + +    +I   +     + DM
Sbjct: 277 LFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRR-NKIEVGLFLGNALADM 335

Query: 358 YGRAGLLEEAEAFIREM 374
           Y + G + EA+    EM
Sbjct: 336 YAKCGCVLEAKGVFHEM 352


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 159/452 (35%), Positives = 266/452 (58%), Gaps = 7/452 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T T    AC L    +    +H +V++     DI + NSL+  Y ++  +  A  +F+ +
Sbjct: 301 TMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRM 360

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGK 128
              DVVSWT +I+ L       +A++ +  ++++   P+  TLVSVLSAC+ +    LG 
Sbjct: 361 ESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGI 420

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H  +++    +++I+ N+++D Y +C  + +   +F  +  +NVVSWT++I G     
Sbjct: 421 RLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINN 480

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
              EA+  F++M+++   +PN  TL++VLSAC+ I AL  GK +H++ + R  +     +
Sbjct: 481 RSFEALLFFRQMKES--MKPNSVTLISVLSACARIGALMRGKEIHAH-ALRTGVGFDGFL 537

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            NA+++MYV+CG    A+  FN    KD  +W+ +++G A  G  + A++LF  M+   +
Sbjct: 538 PNAILDMYVRCGRKVPALNQFNS-QKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEI 596

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD++TFI+L+ ACS  G+V +GL  F  M   Y + P ++HYACVVD+ GRAG L++A 
Sbjct: 597 HPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAY 656

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
            FI++MPI  + ++WGALLNACRIHRN E+ +   + +  K   SVG + L+ N +AG  
Sbjct: 657 DFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCG 716

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            W+  +K+R  +R  GL    GCSW+E+   +
Sbjct: 717 NWDKVSKVRSLMRERGLSADPGCSWVEIKGKV 748



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 109/326 (33%), Positives = 182/326 (55%), Gaps = 6/326 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YTF   LK C+      +  EIHAHVI +G   D+ + N+L+  YV   DI +A  +F
Sbjct: 197 NVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLF 256

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHK 125
           + +   D +SW  +ISG  + G   E +++F     + V P+  T+ +V SAC  L + +
Sbjct: 257 DKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNER 316

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG+ +H + +++    +I ++N+++  Y   G L     +F +M  ++VVSWT MI    
Sbjct: 317 LGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLV 376

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
                 +AV  ++ ME  +   P+E TLV+VLSAC+ I  L  G  +H  I+ +  L   
Sbjct: 377 SHKLPFKAVETYKMME-LEGILPDEITLVSVLSACACIGHLDLGIRLHE-IAIKTGLVSH 434

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
            +V N++I+MY KC  V  A++VF  ++ K+ +SW+++I GL +N    +AL  F  M  
Sbjct: 435 VIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM-K 493

Query: 306 NAVFPDDVTFIALISACSHGGLVDQG 331
            ++ P+ VT I+++SAC+  G + +G
Sbjct: 494 ESMKPNSVTLISVLSACARIGALMRG 519



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 203/382 (53%), Gaps = 10/382 (2%)

Query: 45  IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI-- 102
           + + N+LL  +V   ++  A  +F  +   DV SW  ++ G +K G   EA++++  +  
Sbjct: 132 VRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLW 191

Query: 103 -DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLAS 161
            +++PN  T  SVL  C+ +     GK IHAH +R   E+++ + NA++  Y++CG +++
Sbjct: 192 AEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISN 251

Query: 162 CGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221
              LF KMPKR+ +SW  MI GY E G   E + +F  M +    +P+  T+  V SAC 
Sbjct: 252 ARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELS-VDPDLITMTTVASACE 310

Query: 222 SISALSFGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
            +     G+ VH Y + + +   +S  + N++I MY   G +  A  VF+ +  KD +SW
Sbjct: 311 LLDNERLGRGVHGYVVKSEFGGDIS--MNNSLIQMYSSLGRLEEAETVFSRMESKDVVSW 368

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340
           + +I+ L  +    +A++ + +M +  + PD++T ++++SAC+  G +D G+ L + ++ 
Sbjct: 369 TAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHE-IAI 427

Query: 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI-HRNDEMF 399
              +V  +     ++DMY +   ++ A    R +  +   S W +L+   RI +R+ E  
Sbjct: 428 KTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVS-WTSLILGLRINNRSFEAL 486

Query: 400 DRIRQDLVNKKGVSVGTFALMS 421
              RQ   + K  SV   +++S
Sbjct: 487 LFFRQMKESMKPNSVTLISVLS 508



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 15/173 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L AC+      +  EIHAH +  G   D F+ N++L  YV       A   F
Sbjct: 499 NSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQF 558

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHK 125
           NS    DV +W  +++G ++ G  K A+++F     +++ P+  T +S+L ACS     K
Sbjct: 559 NSQK-KDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACS-----K 612

Query: 126 LGKAIHAHSLRNLNEN------NIILDNAILDFYIRCGSLASCGYLFVKMPKR 172
            G         N+ +N      N+     ++D   R G L         MP R
Sbjct: 613 SGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIR 665


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 159/452 (35%), Positives = 266/452 (58%), Gaps = 7/452 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T T    AC L    +    +H +V++     DI + NSL+  Y ++  +  A  +F+ +
Sbjct: 301 TMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRM 360

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGK 128
              DVVSWT +I+ L       +A++ +  ++++   P+  TLVSVLSAC+ +    LG 
Sbjct: 361 ESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGI 420

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H  +++    +++I+ N+++D Y +C  + +   +F  +  +NVVSWT++I G     
Sbjct: 421 RLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINN 480

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
              EA+  F++M+++   +PN  TL++VLSAC+ I AL  GK +H++ + R  +     +
Sbjct: 481 RSFEALLFFRQMKES--MKPNSVTLISVLSACARIGALMRGKEIHAH-ALRTGVGFDGFL 537

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            NA+++MYV+CG    A+  FN    KD  +W+ +++G A  G  + A++LF  M+   +
Sbjct: 538 PNAILDMYVRCGRKVPALNQFNS-QKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEI 596

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD++TFI+L+ ACS  G+V +GL  F  M   Y + P ++HYACVVD+ GRAG L++A 
Sbjct: 597 HPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAY 656

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
            FI++MPI  + ++WGALLNACRIHRN E+ +   + +  K   SVG + L+ N +AG  
Sbjct: 657 DFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCG 716

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            W+  +K+R  +R  GL    GCSW+E+   +
Sbjct: 717 NWDKVSKVRSLMRERGLSADPGCSWVEIKGKV 748



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 109/326 (33%), Positives = 182/326 (55%), Gaps = 6/326 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YTF   LK C+      +  EIHAHVI +G   D+ + N+L+  YV   DI +A  +F
Sbjct: 197 NVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLF 256

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHK 125
           + +   D +SW  +ISG  + G   E +++F     + V P+  T+ +V SAC  L + +
Sbjct: 257 DKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNER 316

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG+ +H + +++    +I ++N+++  Y   G L     +F +M  ++VVSWT MI    
Sbjct: 317 LGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLV 376

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
                 +AV  ++ ME  +   P+E TLV+VLSAC+ I  L  G  +H  I+ +  L   
Sbjct: 377 SHKLPFKAVETYKMME-LEGILPDEITLVSVLSACACIGHLDLGIRLHE-IAIKTGLVSH 434

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
            +V N++I+MY KC  V  A++VF  ++ K+ +SW+++I GL +N    +AL  F  M  
Sbjct: 435 VIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM-K 493

Query: 306 NAVFPDDVTFIALISACSHGGLVDQG 331
            ++ P+ VT I+++SAC+  G + +G
Sbjct: 494 ESMKPNSVTLISVLSACARIGALMRG 519



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 203/382 (53%), Gaps = 10/382 (2%)

Query: 45  IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI-- 102
           + + N+LL  +V   ++  A  +F  +   DV SW  ++ G +K G   EA++++  +  
Sbjct: 132 VRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLW 191

Query: 103 -DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLAS 161
            +++PN  T  SVL  C+ +     GK IHAH +R   E+++ + NA++  Y++CG +++
Sbjct: 192 AEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISN 251

Query: 162 CGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221
              LF KMPKR+ +SW  MI GY E G   E + +F  M +    +P+  T+  V SAC 
Sbjct: 252 ARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELS-VDPDLITMTTVASACE 310

Query: 222 SISALSFGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
            +     G+ VH Y + + +   +S  + N++I MY   G +  A  VF+ +  KD +SW
Sbjct: 311 LLDNERLGRGVHGYVVKSEFGGDIS--MNNSLIQMYSSLGRLEEAETVFSRMESKDVVSW 368

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340
           + +I+ L  +    +A++ + +M +  + PD++T ++++SAC+  G +D G+ L + ++ 
Sbjct: 369 TAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHE-IAI 427

Query: 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI-HRNDEMF 399
              +V  +     ++DMY +   ++ A    R +  +   S W +L+   RI +R+ E  
Sbjct: 428 KTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVS-WTSLILGLRINNRSFEAL 486

Query: 400 DRIRQDLVNKKGVSVGTFALMS 421
              RQ   + K  SV   +++S
Sbjct: 487 LFFRQMKESMKPNSVTLISVLS 508



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 15/173 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L AC+      +  EIHAH +  G   D F+ N++L  YV       A   F
Sbjct: 499 NSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQF 558

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHK 125
           NS    DV +W  +++G ++ G  K A+++F     +++ P+  T +S+L ACS     K
Sbjct: 559 NSQK-KDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACS-----K 612

Query: 126 LGKAIHAHSLRNLNEN------NIILDNAILDFYIRCGSLASCGYLFVKMPKR 172
            G         N+ +N      N+     ++D   R G L         MP R
Sbjct: 613 SGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIR 665


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 161/480 (33%), Positives = 270/480 (56%), Gaps = 55/480 (11%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVK--DIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           +IH+  I+ G + +  IQN +L F  + +  D+  A Q+F+++  P V SW  +  G S+
Sbjct: 32  QIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMFKGYSR 91

Query: 89  CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
               K  + ++  +   +VKP+  T   +    +  V+ +LG+ +H H ++   ++N+  
Sbjct: 92  IACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNVFA 151

Query: 146 DNAILDFYIRCGSL--------ASC------------GY--------------------- 164
            NA+++ Y  CG +         SC            GY                     
Sbjct: 152 HNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNTG 211

Query: 165 -------LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVL 217
                   F KMP+R+ VSWT MI GY      KEA+ +F+EM+ +K  +P+E T+V+VL
Sbjct: 212 QVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSK-IKPDEFTMVSVL 270

Query: 218 SACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK 277
           +AC+ + AL  G+++ +YI  +  +     VGNA+I+MY KCG+V +A+ +FN L  +DK
Sbjct: 271 TACAQLGALELGEWIRTYID-KNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDK 329

Query: 278 ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKA 337
            +W+ ++ GLA+NGCG +AL +FS M+  +V PD+VT++ ++SAC+H G+VD+G   F +
Sbjct: 330 FTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFAS 389

Query: 338 MSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
           M+  + I P + HY C+VD+ G+AG L+EA   I+ MP++    VWGALL ACRIH++ E
Sbjct: 390 MTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAE 449

Query: 398 MFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           M +R  + ++  +  +   + L  N +A  ++W+   ++R  +   G+KK  GCS IE+N
Sbjct: 450 MAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLIEMN 509



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 154/328 (46%), Gaps = 53/328 (16%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN- 69
           YT+    K  + +   Q   E+H HV++YG   ++F  N+L++ Y     I  A  IF+ 
Sbjct: 115 YTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDM 174

Query: 70  ----------------SVVFPDVVSWTTIISGLSKCG--------FH------------- 92
                           + +  DV+SWT I++G    G        FH             
Sbjct: 175 SCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAM 234

Query: 93  ----------KEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLN 139
                     KEA+ +F  +    +KP+  T+VSVL+AC+ L + +LG+ I  +  +N  
Sbjct: 235 IDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKV 294

Query: 140 ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQE 199
           +N+  + NA++D Y +CG++     +F  +P+R+  +WT M+ G A  G  +EA+++F +
Sbjct: 295 KNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQ 354

Query: 200 MEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKC 259
           M K     P+E T V VLSAC+    +  GK   + ++ R+ +  +      ++++  K 
Sbjct: 355 MLKA-SVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKA 413

Query: 260 GDVGIAIQVF-NMLAYKDKISWSTVISG 286
           G +  A ++  NM    + I W  ++  
Sbjct: 414 GHLKEAHEIIKNMPMKPNSIVWGALLGA 441



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 141/329 (42%), Gaps = 38/329 (11%)

Query: 96  IDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI- 154
           I M C        N  +S+   C S+   K    IH+ +++     N I+ N IL F   
Sbjct: 2   ISMACSQSSPVTENPPLSLFETCKSMYHLK---QIHSRTIKTGIICNPIIQNKILSFCCS 58

Query: 155 -RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATL 213
              G +     LF  +P+ +V SW  M  GY+     K  VS++ EM + +  +P+  T 
Sbjct: 59  REFGDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLE-RNVKPDCYTY 117

Query: 214 VNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 273
             +    +   AL  G+ +H ++  +Y L  +    NA+INMY  CG + +A  +F+M  
Sbjct: 118 PFLFKGFTRSVALQLGRELHCHV-VKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSC 176

Query: 274 YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI 333
             D ++W+ +ISG                   N +  D +++ A+++   + G VD    
Sbjct: 177 KSDVVTWNAMISGY------------------NRIKKDVISWTAIVTGFVNTGQVDAARK 218

Query: 334 LFKAMSTVYEIVPQMQH--YACVVDMYGRAGLLEEAEAFIREM---PIEAEWSVWGALLN 388
            F  M       P+  H  +  ++D Y R    +EA    REM    I+ +     ++L 
Sbjct: 219 YFHKM-------PERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLT 271

Query: 389 ACRIHRNDEMFDRIRQDLVNKKGVSVGTF 417
           AC      E+ + IR   ++K  V   TF
Sbjct: 272 ACAQLGALELGEWIRT-YIDKNKVKNDTF 299



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 102/227 (44%), Gaps = 12/227 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +T    L AC+     +    I  ++ +    +D F+ N+L+  Y    ++  A  IF
Sbjct: 262 DEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIF 321

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           N++   D  +WT ++ GL+  G  +EA++MF  +    V P+  T V VLSAC+      
Sbjct: 322 NTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVD 381

Query: 126 LGKAIHAH-SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIGG 183
            GK   A  + R+  E NI     ++D   + G L     +   MP K N + W  ++G 
Sbjct: 382 EGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGA 441

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATL----VNVLSACSSISAL 226
                  K+A    + +E+  E EPN   +     N+ +AC+    L
Sbjct: 442 CR---IHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKL 485


>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 641

 Score =  301 bits (772), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 174/482 (36%), Positives = 272/482 (56%), Gaps = 36/482 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           ++ TF    KACS           H  V++ G    +FI+NSL+  Y    ++  A ++F
Sbjct: 156 DNLTFIYLFKACSRVKDVLHGQVFHVQVLKLGFGSYLFIENSLIRMYGYFGELGYAQKVF 215

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSL---- 121
           + +   D+VSW ++I G S+C   KE +D+F  +   +V  ++ T+V V+ ACS L    
Sbjct: 216 DKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKVILACSYLCEDG 275

Query: 122 ---------------VSHKLGKA-IHAHSLRNL-----------NENNIILDNAILDFYI 154
                          +   LG + I  +  R L            E NI+  NA+L  Y 
Sbjct: 276 VVDSMVKYIEDKHVDIDVYLGNSLIDMYGRRGLVDLARRVFDRMQEKNIVSWNAMLTGYA 335

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
             G L +   LF +MP RNV+SWT MI G A+   C +A+ +FQEM      +P+E T+ 
Sbjct: 336 TAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQEMMDA-NVKPDEITVS 394

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
           +VLSACS +  L  G+ VH Y+  R+D+     VGNA+I+MY KCG V  A++VF+ +  
Sbjct: 395 SVLSACSHLGLLDTGQTVHEYM-CRHDIKSDVYVGNALIDMYCKCGVVDKALEVFHDMKK 453

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           KD +SW+++I GLA+NG      +LFS M+ + + P   +FI ++ AC+H GLVD+GL  
Sbjct: 454 KDSVSWTSMILGLAVNGFVDNVFELFSQMLRDGLQPTHGSFIGILLACTHAGLVDKGLEY 513

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F++M  VY + P+M+HY CVVD+  R+G L+ A  FI++MP+  +  +W  LL+AC++HR
Sbjct: 514 FESMEHVYGLRPEMKHYGCVVDLLSRSGELDRAYEFIKQMPVVPDVVLWRILLSACKLHR 573

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           N  + +     L+     + G + L+SNT+AG+DRW+D +++RD +    ++K +  S I
Sbjct: 574 NLVLAEIATSKLLELDPSNSGNYVLLSNTYAGSDRWDDASRMRDLMVVGDVQKPSSWSSI 633

Query: 455 EV 456
           EV
Sbjct: 634 EV 635



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 106/435 (24%), Positives = 209/435 (48%), Gaps = 43/435 (9%)

Query: 31  EIHAHVIE-YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
           E HAH+I  + H +   + N +  + ++   +  A+  F  +  P ++ +  +I GLS+ 
Sbjct: 75  EQHAHLIRTHHHKNPKSMSNVIKSYALSRSHLNKANFAFIQIGQPTLLIFNYLIRGLSQS 134

Query: 90  GFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
               EAI M+  +     +  +  T + +  ACS +     G+  H   L+    + + +
Sbjct: 135 ENPNEAIVMYSDLMYNQGILGDNLTFIYLFKACSRVKDVLHGQVFHVQVLKLGFGSYLFI 194

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
           +N+++  Y   G L     +F KM  R++VSW ++I GY++    KE + +F  M +   
Sbjct: 195 ENSLIRMYGYFGELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREA-N 253

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
              +  T+V V+ ACS +        +  YI  ++ + +   +GN++I+MY + G V +A
Sbjct: 254 VTADSVTMVKVILACSYLCEDGVVDSMVKYIEDKH-VDIDVYLGNSLIDMYGRRGLVDLA 312

Query: 266 IQVFNMLAYKDKISWSTVISGLA--------------------------MNGCGR----- 294
            +VF+ +  K+ +SW+ +++G A                          ++GC +     
Sbjct: 313 RRVFDRMQEKNIVSWNAMLTGYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCS 372

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
            AL+LF  M+   V PD++T  +++SACSH GL+D G  + + M   ++I   +     +
Sbjct: 373 DALKLFQEMMDANVKPDEITVSSVLSACSHLGLLDTGQTVHEYMCR-HDIKSDVYVGNAL 431

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR-NDEMFDRIRQDLVNKKGVS 413
           +DMY + G++++A     +M  +   S W +++    ++   D +F+   Q L +    +
Sbjct: 432 IDMYCKCGVVDKALEVFHDMKKKDSVS-WTSMILGLAVNGFVDNVFELFSQMLRDGLQPT 490

Query: 414 VGTF--ALMSNTFAG 426
            G+F   L++ T AG
Sbjct: 491 HGSFIGILLACTHAG 505



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 123/266 (46%), Gaps = 10/266 (3%)

Query: 128 KAIHAHSLRNLNENNII-LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           K  HAH +R  +  N   + N I  + +    L    + F+++ +  ++ +  +I G ++
Sbjct: 74  KEQHAHLIRTHHHKNPKSMSNVIKSYALSRSHLNKANFAFIQIGQPTLLIFNYLIRGLSQ 133

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
                EA+ ++ ++   +    +  T + +  ACS +  +  G+  H  +  +       
Sbjct: 134 SENPNEAIVMYSDLMYNQGILGDNLTFIYLFKACSRVKDVLHGQVFHVQV-LKLGFGSYL 192

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            + N++I MY   G++G A +VF+ +  +D +SW+++I G +     ++ L LF+LM   
Sbjct: 193 FIENSLIRMYGYFGELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREA 252

Query: 307 AVFPDDVTFIALISACSH---GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
            V  D VT + +I ACS+    G+VD  +   +      ++         ++DMYGR GL
Sbjct: 253 NVTADSVTMVKVILACSYLCEDGVVDSMVKYIEDKHVDIDVYLG----NSLIDMYGRRGL 308

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNA 389
           ++ A      M  E     W A+L  
Sbjct: 309 VDLARRVFDRMQ-EKNIVSWNAMLTG 333


>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 675

 Score =  301 bits (772), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 173/490 (35%), Positives = 268/490 (54%), Gaps = 34/490 (6%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+   + ++  +F  ALKAC         + +H+ + + G   D+F+QN L+  YV    
Sbjct: 143 MIRNRAEFDSGSFVFALKACGQFAEKIVGMAVHSVIWKRGFDSDLFVQNGLIQNYVETGC 202

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           +  A Q+F+     DVV+WTT+I+G ++  +  EAI +F  +   DVKPN  T++++LSA
Sbjct: 203 LGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSA 262

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC--------------- 162
           CS     ++GK +H H  R     ++ L NA+LD Y++CG L +                
Sbjct: 263 CSQKGDSEMGKTLHEHIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSW 322

Query: 163 -----GY-----------LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
                GY           LF +MP+RN+VSW  MI GY++     EA+ +F  M      
Sbjct: 323 TSLLNGYAKNGDLGSARKLFDEMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGL 382

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
            P E TLV VLSA   +  L  G+ +H     +  + VS ++ NAV++MY KCG +  A 
Sbjct: 383 VPTEDTLVCVLSASGQLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAA 442

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
           ++F+ +  K+ +SW+++IS  A  G  ++AL LF  MI + + PD +TFI ++SACS+GG
Sbjct: 443 KLFHSMPEKNLVSWNSMISAYASYGHAKKALTLFDQMIGSGLKPDHITFIGVLSACSYGG 502

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 386
            V +G   F++M   + + P+ +HYAC+VD+  R GLL+EA   I  MP+EA    WGAL
Sbjct: 503 FVSEGQAHFESMENCFGVEPKREHYACMVDLLSRVGLLKEAYELISRMPMEASEGGWGAL 562

Query: 387 LNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446
           L+ACR H N EM     + L+       G ++L++N  A   +W+D   +R  +R  G+K
Sbjct: 563 LDACRKHGNVEMAKLAGEKLLELDPEDSGIYSLLANICADGKKWKDVRMVRRMMRERGVK 622

Query: 447 KKTGCSWIEV 456
           K  G S IE+
Sbjct: 623 KVPGHSLIEI 632



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 172/343 (50%), Gaps = 11/343 (3%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVK--DIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           +I AH+   G ++ IF  + LL F       DI  AH IF+    P+   W T+I G  K
Sbjct: 70  QIQAHITCTGLMNQIFPASRLLAFCALSDSGDIHYAHLIFDQTELPNCFFWNTMIKGYCK 129

Query: 89  CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
                     F  +     + ++ + V  L AC       +G A+H+   +   ++++ +
Sbjct: 130 ANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQFAEKIVGMAVHSVIWKRGFDSDLFV 189

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            N ++  Y+  G L     +F +   ++VV+WTTMI GYA   +  EA+++F  M  + +
Sbjct: 190 QNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIALFNSM-LSSD 248

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
            +PNE T++ +LSACS       GK +H +I  R D++ S  + NA+++MYVKCG +  A
Sbjct: 249 VKPNEVTMIALLSACSQKGDSEMGKTLHEHI-RRKDITCSLNLLNAMLDMYVKCGCLTTA 307

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
            ++FN +  +D  SW+++++G A NG    A +LF  M    +    V++ A+I+  S  
Sbjct: 308 REIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPERNI----VSWNAMIAGYSQN 363

Query: 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
               + L LF  M  V  +VP      CV+   G+ G LE  +
Sbjct: 364 SQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQ 406


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 157/461 (34%), Positives = 261/461 (56%), Gaps = 6/461 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML      +++T+   LKAC      +    +H+ V+  G   DI++ NSLL  Y    D
Sbjct: 152 MLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGD 211

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAI---DMFCGIDVKPNANTLVSVLSA 117
           + +A  +F+ +   D+ SW T+ISG +K      A    D+     +  +  TL+ +LSA
Sbjct: 212 MGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSA 271

Query: 118 CSSLVSHKLGKAIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
           C+ L + K GK IH +++RN +   N    N++++ Y  C  +     LF ++  ++ VS
Sbjct: 272 CADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVS 331

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           W +MI GYA  G   E++ +F+ M     + P++ T + VL AC  I+AL +G  +HSY+
Sbjct: 332 WNSMILGYARNGDAFESLRLFRRM-ALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYL 390

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
             +     + +VG A+++MY KCG +  + +VF+ +  K  +SWS +++G  ++G GR+A
Sbjct: 391 -VKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREA 449

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
           + +   M  N+V PD+  F +++SACSH GLV +G  +F  M   Y + P + HY+C+VD
Sbjct: 450 ISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVD 509

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGT 416
           + GRAG L+EA   IR M I+    +W ALL A R+H+N ++ +   Q + +     V +
Sbjct: 510 LLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNPKVVSS 569

Query: 417 FALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +  +SN +A   RW+D  ++R  +RR GLKK  GCS+IE++
Sbjct: 570 YICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELD 610



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 111/401 (27%), Positives = 194/401 (48%), Gaps = 26/401 (6%)

Query: 2   LSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHL-HDIFIQNSLLHFYVTVKD 60
           L C +    +T T++ K         +  ++HAH+I +  L ++ ++   L  FY     
Sbjct: 60  LQCGALLQSFTNTKSFK---------QGQQLHAHMISFSILENNTYLNTKLAAFYAGCGL 110

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAI----DMFCGIDVKPNANTLVSVLS 116
           +  A  IF+ +V  +   W  +I G +  G   +++    +M C    + +  T   VL 
Sbjct: 111 MSQAEVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLC-FGQRADNFTYPFVLK 169

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
           AC  L+  ++G+ +H+  +    E++I + N++L  Y + G + +   +F +M +R++ S
Sbjct: 170 ACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTS 229

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           W TMI GYA+      A  VF  M K      +  TL+ +LSAC+ + A+  GK +H Y 
Sbjct: 230 WNTMISGYAKNADSGTAFLVFDLMGKAG-LFADCTTLLGLLSACADLKAVKEGKVIHGYA 288

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
                 + +    N++I MY  C  +  A ++F  + +KD +SW+++I G A NG   ++
Sbjct: 289 VRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFES 348

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL----ILFKAMSTVYEIVPQMQHYA 352
           L+LF  M ++   PD VTFIA++ AC     +  G+     L K       IV       
Sbjct: 349 LRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVG-----T 403

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
            +VDMY + G L  +     EMP ++  S W A++    +H
Sbjct: 404 ALVDMYSKCGSLACSRRVFDEMPDKSLVS-WSAMVAGYGLH 443


>gi|359491803|ref|XP_002269228.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 550

 Score =  301 bits (771), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 157/443 (35%), Positives = 256/443 (57%), Gaps = 38/443 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +++TF   +K+ S +       ++HAHV+++G   D+F+ N+++  Y + +++ SA ++F
Sbjct: 108 DNFTFPFLIKSSSASPTSLLGHQLHAHVVKFGLDRDVFVVNNMIALYSSFRELRSARKVF 167

Query: 69  N-SVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLG 127
           + S    DVVSWTT+I+G S  G   EA  +F   D+ P  NT+                
Sbjct: 168 DESYSLVDVVSWTTLITGFSNSGQIDEARKIF---DLMPLKNTVSW-------------- 210

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
                              NA++  Y     +     LF +MP R+  SW+ M+ GY++ 
Sbjct: 211 -------------------NAMISGYAGSSRINEARKLFDEMPDRDAASWSAMVSGYSQL 251

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G C EA+ +F EM    +  PNEA LV+ +SAC+ + AL  G+++HSYI  +  L ++  
Sbjct: 252 GMCNEALDLFMEMVTGDKMIPNEAALVSAVSACAQLRALEEGRWLHSYIKEK-KLRINVT 310

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           +G  +++MY KCG +  A  VFN+++ ++  SW+++I+GLA+NGCG++AL LF  M    
Sbjct: 311 LGTVLLDMYGKCGSILDAAGVFNLMSERNVNSWNSMIAGLALNGCGKEALALFWKMQFVG 370

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
             P+ +TFIAL++ CSH GL+ +G  LF  M+ VY I PQ++HY C+VD+ GRAGL++EA
Sbjct: 371 PSPNAITFIALLTGCSHSGLITEGRWLFSMMTQVYGIKPQLKHYGCMVDLLGRAGLVKEA 430

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
             F+ +MP++    +WGAL+ ACRIH   E+ + + + L++ +    G +AL+ N FA A
Sbjct: 431 LDFVEKMPMKPHSELWGALVGACRIHGQVELGEELGKRLIDLEPHHGGRYALLCNIFAAA 490

Query: 428 DRWEDTNKIRDEIRRMGLKKKTG 450
            RW+D   +RD  +   + K  G
Sbjct: 491 QRWDDVAMVRDLEKGRKVLKNPG 513


>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
 gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g22410, mitochondrial; Flags: Precursor
 gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
 gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
 gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
 gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
          Length = 681

 Score =  301 bits (771), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 159/488 (32%), Positives = 271/488 (55%), Gaps = 36/488 (7%)

Query: 4   CPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFS 63
           C S  +H+T+    K C+          I  HV++        + N+ +H + +  D+ +
Sbjct: 150 CESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMEN 209

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSS 120
           A ++F+     D+VSW  +I+G  K G  ++AI ++  ++   VKP+  T++ ++S+CS 
Sbjct: 210 ARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSM 269

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           L     GK  + +   N     I L NA++D + +CG +     +F  + KR +VSWTTM
Sbjct: 270 LGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTM 329

Query: 181 IGGYAERGFC-------------------------------KEAVSVFQEMEKTKEAEPN 209
           I GYA  G                                 ++A+++FQEM+ T   +P+
Sbjct: 330 ISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQ-TSNTKPD 388

Query: 210 EATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF 269
           E T+++ LSACS + AL  G ++H YI  +Y LS++  +G ++++MY KCG++  A+ VF
Sbjct: 389 EITMIHCLSACSQLGALDVGIWIHRYIE-KYSLSLNVALGTSLVDMYAKCGNISEALSVF 447

Query: 270 NMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVD 329
           + +  ++ ++++ +I GLA++G    A+  F+ MI   + PD++TFI L+SAC HGG++ 
Sbjct: 448 HGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQ 507

Query: 330 QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
            G   F  M + + + PQ++HY+ +VD+ GRAGLLEEA+  +  MP+EA+ +VWGALL  
Sbjct: 508 TGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFG 567

Query: 390 CRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKT 449
           CR+H N E+ ++  + L+       G + L+   +  A+ WED  + R  +   G++K  
Sbjct: 568 CRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIP 627

Query: 450 GCSWIEVN 457
           GCS IEVN
Sbjct: 628 GCSSIEVN 635



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 104/397 (26%), Positives = 188/397 (47%), Gaps = 45/397 (11%)

Query: 10  HYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAH--QI 67
           H      L+ C L   H K  +I A +I  G + D F  + L+ F    +  +  +  +I
Sbjct: 53  HNPLLSLLEKCKLL-LHLK--QIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKI 109

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI------DVKPNANTLVSVLSACSSL 121
              +  P++ SW   I G S+    KE+  ++  +      + +P+  T   +   C+ L
Sbjct: 110 LKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADL 169

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
               LG  I  H L+   E    + NA +  +  CG + +   +F + P R++VSW  +I
Sbjct: 170 RLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLI 229

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
            GY + G  ++A+ V++ ME ++  +P++ T++ ++S+CS +  L+ GK  + Y+     
Sbjct: 230 NGYKKIGEAEKAIYVYKLME-SEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKEN-G 287

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC--------- 292
           L ++  + NA+++M+ KCGD+  A ++F+ L  +  +SW+T+ISG A  G          
Sbjct: 288 LRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFD 347

Query: 293 ----------------------GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQ 330
                                 G+ AL LF  M  +   PD++T I  +SACS  G +D 
Sbjct: 348 DMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDV 407

Query: 331 GLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           G+ + + +   Y +   +     +VDMY + G + EA
Sbjct: 408 GIWIHRYIEK-YSLSLNVALGTSLVDMYAKCGNISEA 443


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  301 bits (771), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 166/480 (34%), Positives = 267/480 (55%), Gaps = 35/480 (7%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           +F  ALKAC       +   ++  V + G   ++ ++N L+HFY     + +A Q+F+  
Sbjct: 259 SFVFALKACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDES 318

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              DVV+WTT+I G +     +EA+++F  +    V+PN  TL++V+SACS + + ++GK
Sbjct: 319 SDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGK 378

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSL-------------------------ASCG 163
            +H          ++ L NA+LD Y++C  L                         A CG
Sbjct: 379 RVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCG 438

Query: 164 YL------FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVL 217
            L      F + P++N V W+ MI GY++    KE++ +F EM + +   P E TLV+VL
Sbjct: 439 DLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMME-RGVVPIEHTLVSVL 497

Query: 218 SACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK 277
           SAC  ++ L+ G ++H Y      + +S  + NA+++MY KCG +  A +VF+ +  ++ 
Sbjct: 498 SACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNL 557

Query: 278 ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKA 337
           ISW+T+I+G A NG  +QA+ +F  M      P+++TF++L++ACSHGGL+ +G   F  
Sbjct: 558 ISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDN 617

Query: 338 MSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
           M   Y I P+  HYAC+VD+ GR GLLEEA   I  MP++   + WGALLNACR+H N E
Sbjct: 618 MERKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVE 677

Query: 398 MFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +      +L+       G + L++NT A   +W D  ++R  ++  G+KK  G S IE++
Sbjct: 678 LARLSAHNLLRLDPEDSGIYVLLANTCANDRKWSDVRRVRSLMKDKGVKKIPGYSLIEID 737



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 178/383 (46%), Gaps = 43/383 (11%)

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLS 116
           D+  AH IFN V  P+   W T+I G         A   F     + V+ ++ + V  L 
Sbjct: 206 DLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALK 265

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
           AC    +   G++++    +   +  +++ N ++ FY   G L +   +F +   ++VV+
Sbjct: 266 ACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVT 325

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           WTTMI GYA     +EA+ VF E+      EPNE TL+ V+SACS +  L  GK VH  +
Sbjct: 326 WTTMIDGYAAHDCSEEAMEVF-ELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKV 384

Query: 237 STRYDLSVSNLVGNAVINMYV-------------------------------KCGDVGIA 265
             + ++  S  + NA+++MYV                               KCGD+  A
Sbjct: 385 EEK-NMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESA 443

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
            + F+    K+ + WS +I+G + N   +++L+LF  M+   V P + T ++++SAC   
Sbjct: 444 RRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQL 503

Query: 326 GLVDQGLILFKAMSTVYEIVP-QMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 384
             ++ G  + +    V +I+P  +     +VDMY + G ++ A      MP E     W 
Sbjct: 504 TCLNLGDWIHQYF-VVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMP-ERNLISWN 561

Query: 385 ALLNA----CRIHRNDEMFDRIR 403
            ++       R  +   +FD++R
Sbjct: 562 TMIAGYAANGRAKQAINVFDQMR 584



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 152/319 (47%), Gaps = 37/319 (11%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    + ACS     +    +H  V E      + + N+LL  YV    +  A ++F
Sbjct: 357 NEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELF 416

Query: 69  NSVVFPDVVSWTTIISGLSKCG-------------------------------FHKEAID 97
           + +   DV SWT++++G +KCG                                 KE++ 
Sbjct: 417 DRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLK 476

Query: 98  MFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAH-SLRNLNENNIILDNAILDFY 153
           +F  +    V P  +TLVSVLSAC  L    LG  IH +  +  +   ++ L+NAI+D Y
Sbjct: 477 LFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMY 536

Query: 154 IRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATL 213
            +CGS+ +   +F  MP+RN++SW TMI GYA  G  K+A++VF +M +    EPN  T 
Sbjct: 537 AKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQM-RNMGFEPNNITF 595

Query: 214 VNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF-NML 272
           V++L+ACS    +S G+     +  +Y +         ++++  + G +  A ++  NM 
Sbjct: 596 VSLLTACSHGGLISEGREYFDNMERKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANMP 655

Query: 273 AYKDKISWSTVISGLAMNG 291
               + +W  +++   M+G
Sbjct: 656 MQPCEAAWGALLNACRMHG 674



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 117/239 (48%), Gaps = 16/239 (6%)

Query: 157 GSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNV 216
           G L     +F ++ + N   W TMI GY        A S F  M + +  E +  + V  
Sbjct: 205 GDLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLR-VEMDSRSFVFA 263

Query: 217 LSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD 276
           L AC     +  G+ V+  +  +       LV N +I+ Y + G +  A QVF+  + KD
Sbjct: 264 LKACQQFETVFEGESVYCVV-WKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKD 322

Query: 277 KISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFK 336
            ++W+T+I G A + C  +A+++F LM+++ V P++VT IA++SACS  G ++ G     
Sbjct: 323 VVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMG----- 377

Query: 337 AMSTVYEIVPQ------MQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
               V+E V +      +  +  ++DMY +   L +A      M  +  +S W +++N 
Sbjct: 378 --KRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYS-WTSMVNG 433


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 167/483 (34%), Positives = 267/483 (55%), Gaps = 42/483 (8%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           F  A KAC+++    +  E+H      G + D+F+ N+L+H Y   K +  A ++F+ +V
Sbjct: 167 FLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLV 226

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKA 129
             DVVSWT++ S   KCGF ++ +D+F  +    VKPN  T+ S+L AC+ L   K GK 
Sbjct: 227 VRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKE 286

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWT----------- 178
           IH  ++R+    N+ + +A++  Y +C S+     +F  MP R+VVSW            
Sbjct: 287 IHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKE 346

Query: 179 ------------------------TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
                                    +IGG  E G  +EAV +F++M+K    +PNE T+ 
Sbjct: 347 YEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMG-FKPNEITIS 405

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGN-AVINMYVKCGDVGIAIQVFNMLA 273
           ++L ACS    L  GK +H Y+   +   V +L    A++ MY KCGD+ ++  VF+M+ 
Sbjct: 406 SILPACSFSENLRMGKEIHCYVFRHW--KVGDLTSTTALLYMYAKCGDLNLSRNVFDMMR 463

Query: 274 YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI 333
            KD ++W+T+I   AM+G G++AL LF  M+++ V P+ VTF  ++S CSH  LV++G+ 
Sbjct: 464 RKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQ 523

Query: 334 LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           +F +M   + + P   HY+CVVD+Y RAG L EA  FI+ MP+E   S WGALL ACR++
Sbjct: 524 IFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVY 583

Query: 394 RNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSW 453
           +N E+     + L   +  + G +  + N    A  W + +++R  ++  G+ K  GCSW
Sbjct: 584 KNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSW 643

Query: 454 IEV 456
           ++V
Sbjct: 644 LQV 646



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 155/294 (52%), Gaps = 5/294 (1%)

Query: 51  LLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPN 107
           L+   + V D   A Q+F+++  PD  + +T+IS L+  G   EAI ++  +    +KP+
Sbjct: 104 LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 163

Query: 108 ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFV 167
               ++   AC+        K +H  + R    +++ + NA++  Y +C  +     +F 
Sbjct: 164 MPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFD 223

Query: 168 KMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 227
            +  R+VVSWT++   Y + GF ++ + VF+EM  +   +PN  T+ ++L AC+ +  L 
Sbjct: 224 DLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSG-VKPNPMTVSSILPACAELKDLK 282

Query: 228 FGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGL 287
            GK +H + + R+ + V+  V +A++++Y KC  V  A  VF+++ ++D +SW+ V++  
Sbjct: 283 SGKEIHGF-AVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAY 341

Query: 288 AMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 341
             N    +   LF  M  + V  D+ T+ A+I  C   G  ++ + +F+ M  +
Sbjct: 342 FKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKM 395



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 138/317 (43%), Gaps = 40/317 (12%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T +  L AC+     +   EIH   + +G + ++F+ ++L+  Y     +  A  +F
Sbjct: 264 NPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVF 323

Query: 69  NSVVFPDVVSWT-----------------------------------TIISGLSKCGFHK 93
           + +   DVVSW                                     +I G  + G  +
Sbjct: 324 DLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSE 383

Query: 94  EAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAIL 150
           EA++MF  +     KPN  T+ S+L ACS   + ++GK IH +  R+    ++    A+L
Sbjct: 384 EAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALL 443

Query: 151 DFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNE 210
             Y +CG L     +F  M +++VV+W TMI   A  G  KEA+ +F +M  ++  +PN 
Sbjct: 444 YMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSR-VQPNS 502

Query: 211 ATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN 270
            T   VLS CS    +  G  + + +   + +       + V+++Y + G +  A +   
Sbjct: 503 VTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQ 562

Query: 271 MLAYKDKIS-WSTVISG 286
            +  +   S W  +++ 
Sbjct: 563 GMPMEPTASAWGALLAA 579



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 102/226 (45%), Gaps = 28/226 (12%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T +  L ACS +   +   EIH +V  +  + D+    +LL+ Y    D+  +  +F
Sbjct: 400 NEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVF 459

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS-SLVSH 124
           + +   DVV+W T+I   +  G  KEA+ +F  +    V+PN+ T   VLS CS S +  
Sbjct: 460 DMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVE 519

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK-MPKRNVVS-WTTMIG 182
           +  +  ++    +L E +    + ++D Y R G L    Y F++ MP     S W  ++ 
Sbjct: 520 EGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNE-AYKFIQGMPMEPTASAWGALLA 578

Query: 183 GYAERGFCKEAVSVFQEMEKTK-------EAEPNEA----TLVNVL 217
                     A  V++ +E  K       E EPN      +L N+L
Sbjct: 579 ----------ACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNIL 614



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 42/79 (53%)

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           +G  +I + +  GD   A Q+F+ +   D  + ST+IS L  +G   +A++++S +    
Sbjct: 100 LGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERG 159

Query: 308 VFPDDVTFIALISACSHGG 326
           + PD   F+A   AC+  G
Sbjct: 160 IKPDMPVFLAAAKACAVSG 178


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  301 bits (770), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 148/457 (32%), Positives = 266/457 (58%), Gaps = 8/457 (1%)

Query: 4   CPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFS 63
           CP   +H  F   LK+C++    +    +H  ++  G   D++  N+L++ Y  +  I S
Sbjct: 102 CP---DHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDS 158

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 120
             ++F  +   DVVS+ T+I+G ++ G +++A+ M   +   D+KP+A TL SVL   S 
Sbjct: 159 VRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSE 218

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
            V    GK IH + +R   ++++ + ++++D Y +   +     +F  + +R+ +SW ++
Sbjct: 219 YVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSL 278

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           + GY + G   EA+ +F++M   K   P      +V+ AC+ ++ L  GK +H Y+  R 
Sbjct: 279 VAGYVQNGRYNEALRLFRQMVSAK-VRPGAVAFSSVIPACAHLATLHLGKQLHGYV-LRG 336

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
               +  + +A+++MY KCG++  A ++F+ +   D++SW+ +I G A++G G +A+ LF
Sbjct: 337 GFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLF 396

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
             M    V P+ V F+A+++ACSH GLVD+    F +M+ VY +  +++HYA V D+ GR
Sbjct: 397 EEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGR 456

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           AG LEEA  FI +M +E   SVW  LL++C +H+N E+ +++ + +      ++G + LM
Sbjct: 457 AGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLM 516

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            N +A   RW++  K+R  +R+ GL+KK  CSWIE+ 
Sbjct: 517 CNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMK 553



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 86/197 (43%), Gaps = 34/197 (17%)

Query: 209 NEATLVNVLSACSSISALSFGKYVHS-YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
           ++A +  ++   + I + S  K +H+ +I T+   S+S+   + VI++Y     +  A+ 
Sbjct: 4   SKALIKTLIKNPTRIKSKSQAKQLHAQFIRTQ---SLSHTSASIVISIYTNLKLLHEALL 60

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS---- 323
           VF  L     ++W +VI          +AL  F  M  +   PD   F +++ +C+    
Sbjct: 61  VFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMD 120

Query: 324 -------HGGLVDQG-----------------LILFKAMSTVYEIVPQMQ--HYACVVDM 357
                  HG +V  G                 L+   ++  V+E++P+     Y  V+  
Sbjct: 121 LRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAG 180

Query: 358 YGRAGLLEEAEAFIREM 374
           Y ++G+ E+A   +REM
Sbjct: 181 YAQSGMYEDALRMVREM 197


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  301 bits (770), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 167/483 (34%), Positives = 267/483 (55%), Gaps = 42/483 (8%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           F  A KAC+++    +  E+H      G + D+F+ N+L+H Y   K +  A ++F+ +V
Sbjct: 81  FLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLV 140

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKA 129
             DVVSWT++ S   KCGF ++ +D+F  +    VKPN  T+ S+L AC+ L   K GK 
Sbjct: 141 VRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKE 200

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWT----------- 178
           IH  ++R+    N+ + +A++  Y +C S+     +F  MP R+VVSW            
Sbjct: 201 IHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKE 260

Query: 179 ------------------------TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
                                    +IGG  E G  +EAV +F++M+K    +PNE T+ 
Sbjct: 261 YEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMG-FKPNEITIS 319

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGN-AVINMYVKCGDVGIAIQVFNMLA 273
           ++L ACS    L  GK +H Y+   +   V +L    A++ MY KCGD+ ++  VF+M+ 
Sbjct: 320 SILPACSFSENLRMGKEIHCYVFRHW--KVGDLTSTTALLYMYAKCGDLNLSRNVFDMMR 377

Query: 274 YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI 333
            KD ++W+T+I   AM+G G++AL LF  M+++ V P+ VTF  ++S CSH  LV++G+ 
Sbjct: 378 RKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQ 437

Query: 334 LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           +F +M   + + P   HY+CVVD+Y RAG L EA  FI+ MP+E   S WGALL ACR++
Sbjct: 438 IFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVY 497

Query: 394 RNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSW 453
           +N E+     + L   +  + G +  + N    A  W + +++R  ++  G+ K  GCSW
Sbjct: 498 KNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSW 557

Query: 454 IEV 456
           ++V
Sbjct: 558 LQV 560



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 155/294 (52%), Gaps = 5/294 (1%)

Query: 51  LLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPN 107
           L+   + V D   A Q+F+++  PD  + +T+IS L+  G   EAI ++  +    +KP+
Sbjct: 18  LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 77

Query: 108 ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFV 167
               ++   AC+        K +H  + R    +++ + NA++  Y +C  +     +F 
Sbjct: 78  MPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFD 137

Query: 168 KMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 227
            +  R+VVSWT++   Y + GF ++ + VF+EM  +   +PN  T+ ++L AC+ +  L 
Sbjct: 138 DLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSG-VKPNPMTVSSILPACAELKDLK 196

Query: 228 FGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGL 287
            GK +H + + R+ + V+  V +A++++Y KC  V  A  VF+++ ++D +SW+ V++  
Sbjct: 197 SGKEIHGF-AVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAY 255

Query: 288 AMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 341
             N    +   LF  M  + V  D+ T+ A+I  C   G  ++ + +F+ M  +
Sbjct: 256 FKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKM 309



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 138/317 (43%), Gaps = 40/317 (12%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T +  L AC+     +   EIH   + +G + ++F+ ++L+  Y     +  A  +F
Sbjct: 178 NPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVF 237

Query: 69  NSVVFPDVVSWT-----------------------------------TIISGLSKCGFHK 93
           + +   DVVSW                                     +I G  + G  +
Sbjct: 238 DLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSE 297

Query: 94  EAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAIL 150
           EA++MF  +     KPN  T+ S+L ACS   + ++GK IH +  R+    ++    A+L
Sbjct: 298 EAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALL 357

Query: 151 DFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNE 210
             Y +CG L     +F  M +++VV+W TMI   A  G  KEA+ +F +M  ++  +PN 
Sbjct: 358 YMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSR-VQPNS 416

Query: 211 ATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN 270
            T   VLS CS    +  G  + + +   + +       + V+++Y + G +  A +   
Sbjct: 417 VTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQ 476

Query: 271 MLAYKDKIS-WSTVISG 286
            +  +   S W  +++ 
Sbjct: 477 GMPMEPTASAWGALLAA 493



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 102/226 (45%), Gaps = 28/226 (12%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T +  L ACS +   +   EIH +V  +  + D+    +LL+ Y    D+  +  +F
Sbjct: 314 NEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVF 373

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS-SLVSH 124
           + +   DVV+W T+I   +  G  KEA+ +F  +    V+PN+ T   VLS CS S +  
Sbjct: 374 DMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVE 433

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK-MPKRNVVS-WTTMIG 182
           +  +  ++    +L E +    + ++D Y R G L    Y F++ MP     S W  ++ 
Sbjct: 434 EGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNE-AYKFIQGMPMEPTASAWGALLA 492

Query: 183 GYAERGFCKEAVSVFQEMEKTK-------EAEPNEA----TLVNVL 217
                     A  V++ +E  K       E EPN      +L N+L
Sbjct: 493 ----------ACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNIL 528



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 42/79 (53%)

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           +G  +I + +  GD   A Q+F+ +   D  + ST+IS L  +G   +A++++S +    
Sbjct: 14  LGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERG 73

Query: 308 VFPDDVTFIALISACSHGG 326
           + PD   F+A   AC+  G
Sbjct: 74  IKPDMPVFLAAAKACAVSG 92


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  301 bits (770), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 164/489 (33%), Positives = 270/489 (55%), Gaps = 43/489 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YTF   L ACS  +   + ++IH+ + +   L D++I ++L+  Y    ++  A Q+F
Sbjct: 151 NEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVF 210

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           + +   +VVSW ++I+   + G   EA+ +F  +    V+P+  TL SV+SAC+SL + K
Sbjct: 211 DEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIK 270

Query: 126 LGKAIHAHSLR-NLNENNIILDNAILDFYIRCGSLASC--------------------GY 164
           +G+ +HA  ++ +   N+IIL NA +D Y +C  +                       GY
Sbjct: 271 VGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGY 330

Query: 165 -----------LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATL 213
                      +F KM +RNVVSW  +I GY + G  +EA+S+F  + K +   P   T 
Sbjct: 331 AMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFC-LLKRESVCPTHYTF 389

Query: 214 VNVLSACSSISALSFGKYVHSYISTRYDLSVSN------LVGNAVINMYVKCGDVGIAIQ 267
            N+L AC+ ++ L  G   H ++  ++     +       VGN++I+MYVKCG V     
Sbjct: 390 ANILKACADLADLHLGMQAHVHV-LKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYL 448

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           VF  +  +D +SW+ +I G A NG G +AL+LF  M+ +   PD +T I ++SAC H G 
Sbjct: 449 VFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGF 508

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           V++G   F +M+  + + P   HY C+VD+ GRAG LEEA++ I EMP++ +  +WG+LL
Sbjct: 509 VEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLL 568

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
            AC++HRN  +   + + L   +  + G + L+SN +A   +W D   +R  +R+ G+ K
Sbjct: 569 AACKVHRNITLGKYVAEKLFEVETSNSGPYVLLSNMYAELGKWGDAMNVRKLMRKEGVTK 628

Query: 448 KTGCSWIEV 456
           + GCSWI++
Sbjct: 629 QPGCSWIKI 637



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 117/429 (27%), Positives = 200/429 (46%), Gaps = 78/429 (18%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           +HA VI+ G  +++FIQN L+  Y     +    Q+F+ +   +V +W ++++GL+K GF
Sbjct: 42  VHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGF 101

Query: 92  HKEAIDMFCGIDVKP----------------------------------NANTLVSVLSA 117
             EA  +F  +  +                                   N  T  S LSA
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSA 161

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           CS L     G  IH+   ++   +++ + +A++D Y +CG++     +F +M  RNVVSW
Sbjct: 162 CSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSW 221

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
            ++I  Y + G   EA+ VFQ M ++   EP+E TL +V+SAC+S+SA+  G+ VH+ + 
Sbjct: 222 NSLITCYEQNGPAVEALKVFQVMLESW-VEPDEVTLASVISACASLSAIKVGQEVHARVV 280

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDV-----------------------GIAIQ------- 267
               L    ++ NA ++MY KC  +                       G A+        
Sbjct: 281 KMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAAR 340

Query: 268 -VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS--- 323
            +F  +A ++ +SW+ +I+G   NG   +AL LF L+   +V P   TF  ++ AC+   
Sbjct: 341 LMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLA 400

Query: 324 --HGGLVDQGLIL---FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEA 378
             H G+     +L   FK  S   + +        ++DMY + G +EE     R+M +E 
Sbjct: 401 DLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNS---LIDMYVKCGCVEEGYLVFRKM-MER 456

Query: 379 EWSVWGALL 387
           +   W A++
Sbjct: 457 DCVSWNAMI 465


>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  301 bits (770), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 161/481 (33%), Positives = 265/481 (55%), Gaps = 44/481 (9%)

Query: 19  ACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVT---VKDIFSAHQIFNSVVFPD 75
           A S++  HQ     HAH+++ G +H  F  + L+    T    + I  AH IF+ +  P+
Sbjct: 17  ATSISELHQA----HAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPN 72

Query: 76  VVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHA 132
              W TII   +     + A+ +F  +    V P+  T    L +C S    + G+ IH 
Sbjct: 73  SYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHG 132

Query: 133 HSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK- 191
           H L+    +++ + N ++  Y  CG +    +L  +M +R+VVSW  ++  YAERG  + 
Sbjct: 133 HVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMEL 192

Query: 192 -------------------------------EAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
                                          E + +F++M+     +P+  TLV+VLSAC
Sbjct: 193 ASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAG-VKPDNCTLVSVLSAC 251

Query: 221 SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
           + + ALS G++VH+YI  +  +S+   V  A+++MY KCG +  A++VFN    KD  +W
Sbjct: 252 AHVGALSQGEWVHAYID-KNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTW 310

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340
           +++ISGL+ +G G+ ALQ+FS M++    P++VTF+ ++SACS  GL+D+G  +F  M  
Sbjct: 311 NSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVH 370

Query: 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFD 400
           V+ I P ++HY C+VD+ GR GLLEEAE  +++MP +    VW +LL ACR H N E+ +
Sbjct: 371 VHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAE 430

Query: 401 RIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           R+ Q L+        +F  +SN +A   RW+D  ++R ++R  G++K  GCS IEV+ ++
Sbjct: 431 RVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMIEVDGTV 490

Query: 461 F 461
           +
Sbjct: 491 Y 491



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 132/261 (50%), Gaps = 44/261 (16%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV---------- 58
           + YTFT ALK+C      ++  +IH HV++ G   D+FIQN+L+H Y +           
Sbjct: 107 DKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLL 166

Query: 59  -----KDIFS-----------------AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAI 96
                +D+ S                 + ++F      +VVSW  +I+G S  G   E +
Sbjct: 167 DRMLERDVVSWNALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVL 226

Query: 97  DMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD----NAI 149
            +F  +    VKP+  TLVSVLSAC+ + +   G+ +HA+    +++N I +D     A+
Sbjct: 227 VLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAY----IDKNGISIDGFVATAL 282

Query: 150 LDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN 209
           +D Y +CGS+     +F    ++++ +W ++I G +  G  + A+ +F EM   +  +PN
Sbjct: 283 VDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEM-LVEGFKPN 341

Query: 210 EATLVNVLSACSSISALSFGK 230
           E T V VLSACS    L  G+
Sbjct: 342 EVTFVCVLSACSRAGLLDEGR 362



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 96/210 (45%), Gaps = 16/210 (7%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L AC+      +   +HA++ + G   D F+  +L+  Y     I  A ++FNS 
Sbjct: 243 TLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSC 302

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHKLGK 128
           +  D+ +W +IISGLS  G  + A+ +F  + V   KPN  T V VLSACS       G+
Sbjct: 303 LRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGR 362

Query: 129 A-----IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV-VSWTTMIG 182
                 +H H ++   E+       ++D   R G L     L  KMP++   V W +++G
Sbjct: 363 EMFNLMVHVHGIQPTIEHY----GCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLG 418

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEAT 212
                G  + A  V Q   K  E  P E++
Sbjct: 419 ACRNHGNVELAERVAQ---KLLELSPQESS 445


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  301 bits (770), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 164/474 (34%), Positives = 269/474 (56%), Gaps = 27/474 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +     LKACS     +   EIH   ++ G + D+F+ N+L+  Y     + SA  +F
Sbjct: 108 DSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLF 167

Query: 69  NSVVFPDVVSWTTII----------------------SGLSKCGFHKEAIDMFCGI---D 103
           + +   DVVSW+T+I                      +G  +C   +E   +F  +   +
Sbjct: 168 DKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEEN 227

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCG 163
           V PN  T++S++ +C  + + +LGK +HA+ LRN    ++ L  A++D Y +CG + S  
Sbjct: 228 VFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSAR 287

Query: 164 YLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI 223
            +F  M  ++V++WT MI  YA+      A  +F +M +     PNE T+V++LS C+  
Sbjct: 288 AIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQM-RDNGVRPNELTMVSLLSLCAVN 346

Query: 224 SALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTV 283
            AL  GK+ H+YI  +  + V  ++  A+I+MY KCGD+  A ++F+    +D  +W+ +
Sbjct: 347 GALDMGKWFHAYID-KQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVM 405

Query: 284 ISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 343
           ++G  M+G G +AL+LF+ M    V P+D+TFI  + ACSH GLV +G  LF+ M   + 
Sbjct: 406 MAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFG 465

Query: 344 IVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIR 403
           +VP+++HY C+VD+ GRAGLL+EA   I  MP+    ++WGA+L AC+IH+N  M +   
Sbjct: 466 LVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNMGELAA 525

Query: 404 QDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           ++L+  +  + G   LMSN +A A+RW D   +R  ++  G+KK+ G S IEVN
Sbjct: 526 RELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVN 579



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 162/313 (51%), Gaps = 24/313 (7%)

Query: 102 IDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLAS 161
           +D++ ++  + SVL ACS +   ++GK IH  S++N   +++ + NA++  Y  CGSL S
Sbjct: 103 LDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVS 162

Query: 162 CGYLFVKMPKRNVVSWTTMIGGYAE--RGFCKEAVSVFQEM-------EKTKEAE----- 207
              LF KM +R+VVSW+TMI  Y     GF + ++  +  M          +E E     
Sbjct: 163 ARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVR 222

Query: 208 -------PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCG 260
                  PN+ T+++++ +C  + A+  GK +H+YI  R    +S  +  A+++MY KCG
Sbjct: 223 MIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYI-LRNGFGMSLALATALVDMYGKCG 281

Query: 261 DVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALIS 320
           ++  A  +F+ +  KD ++W+ +IS  A   C   A QLF  M  N V P+++T ++L+S
Sbjct: 282 EIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLS 341

Query: 321 ACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 380
            C+  G +D G   F A      +   +     ++DMY + G +  A+    E  I+ + 
Sbjct: 342 LCAVNGALDMGK-WFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSE-AIDRDI 399

Query: 381 SVWGALLNACRIH 393
             W  ++    +H
Sbjct: 400 CTWNVMMAGYGMH 412


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  301 bits (770), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 163/456 (35%), Positives = 262/456 (57%), Gaps = 6/456 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L AC+     +    IH   ++     D+    +L+  Y       +A   F
Sbjct: 429 NRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTF 488

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           N +   D+V+W ++I+G ++ G    AIDMF  +    + P+A T+V V+ AC+ L    
Sbjct: 489 NRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLD 548

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIGGY 184
            G  IH   ++   E++  + NA++D Y +CGSL S  +LF K    ++ V+W  +I  Y
Sbjct: 549 QGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAY 608

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
            + G  KEA+S F +M + +   PN  T V+VL A + ++A   G   H+ I     LS 
Sbjct: 609 MQNGHAKEAISSFHQM-RLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLS- 666

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           + LVGN++I+MY KCG +  + ++FN + +KD +SW+ ++SG A++G G +A+ LFSLM 
Sbjct: 667 NTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQ 726

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
            + V  D V+F++++SAC H GLV++G  +F +MS  Y I P ++HYAC+VD+ GRAGL 
Sbjct: 727 ESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLF 786

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           +E   FI+ MP+E +  VWGALL +CR+H N ++ +     LV  +  +   F ++S+ +
Sbjct: 787 DETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIY 846

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           A + RW D  K R ++  +GLKK  GCSW+E+   +
Sbjct: 847 AQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKV 882



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/395 (27%), Positives = 202/395 (51%), Gaps = 12/395 (3%)

Query: 27  QKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGL 86
           +K  EIH   ++     DI +   L+  Y    +   A Q+F  +   D+V+W+ II+ L
Sbjct: 346 EKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAAL 405

Query: 87  SKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNI 143
            + G+ +EA+ +F  +    +KPN  TL+S+L AC+ L   KLGK+IH  +++   ++++
Sbjct: 406 VQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDL 465

Query: 144 ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
               A++  Y +CG   +    F +M  R++V+W ++I GYA+ G    A+ +F ++ + 
Sbjct: 466 STGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKL-RL 524

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
               P+  T+V V+ AC+ ++ L  G  +H  I  +        V NA+I+MY KCG + 
Sbjct: 525 SAINPDAGTMVGVVPACALLNDLDQGTCIHGLI-VKLGFESDCHVKNALIDMYAKCGSLP 583

Query: 264 IAIQVFNMLAY-KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
            A  +FN   + KD+++W+ +I+    NG  ++A+  F  M +    P+ VTF++++ A 
Sbjct: 584 SAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAA 643

Query: 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
           ++     +G+  F A       +        ++DMY + G L+ +E    EM  +   S 
Sbjct: 644 AYLAAFREGMA-FHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVS- 701

Query: 383 WGALLNACRIH----RNDEMFDRIRQDLVNKKGVS 413
           W A+L+   +H    R   +F  +++  V    VS
Sbjct: 702 WNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVS 736



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 187/347 (53%), Gaps = 8/347 (2%)

Query: 47  IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---D 103
           + N L+  Y    D+  A ++F+ +V  D VSW T+++G +  G   E +++F  +   +
Sbjct: 265 VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGN 324

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCG 163
           V+ N  + VS   A +  +  + GK IH  +L+   +++I++   ++  Y +CG      
Sbjct: 325 VRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAK 384

Query: 164 YLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI 223
            LF  +  R++V+W+ +I    + G+ +EA+S+FQEM+  K  +PN  TL+++L AC+ +
Sbjct: 385 QLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQK-MKPNRVTLMSILPACADL 443

Query: 224 SALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTV 283
           S L  GK +H + + + D+      G A+++MY KCG    A+  FN ++ +D ++W+++
Sbjct: 444 SLLKLGKSIHCF-TVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSL 502

Query: 284 ISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV-Y 342
           I+G A  G    A+ +F  + ++A+ PD  T + ++ AC+    +DQG  +   +  + +
Sbjct: 503 INGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGF 562

Query: 343 EIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           E    +++   ++DMY + G L  AE    +     +   W  ++ A
Sbjct: 563 ESDCHVKN--ALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 172/333 (51%), Gaps = 11/333 (3%)

Query: 2   LSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDI 61
           LS  +  N+  + + L +C   +P    L+IHA +I  G  H   I + L++ Y      
Sbjct: 24  LSSSTYTNYLHYPRLLSSCKHLNP---LLQIHAQIIVSGFKHHHSITH-LINLYSLFHKC 79

Query: 62  FSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-CGID--VKPNANTLVSVLSAC 118
             A  +F+S   P  + W ++I   ++   + EA++M+ C ++  ++P+  T   VL AC
Sbjct: 80  DLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKAC 139

Query: 119 SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWT 178
           +  ++ + G   H    R   E ++ +   ++D Y + G L     +F KMPKR+VV+W 
Sbjct: 140 TGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWN 199

Query: 179 TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST 238
            MI G ++     EAV  F+ M+     EP+  +L+N+      +S +   + +H Y+  
Sbjct: 200 AMIAGLSQSEDPCEAVDFFRSMQLVG-VEPSSVSLLNLFPGICKLSNIELCRSIHGYVFR 258

Query: 239 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQ 298
           R     S+ V N +I++Y KCGDV +A +VF+ +  +D +SW T+++G A NGC  + L+
Sbjct: 259 R---DFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLE 315

Query: 299 LFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
           LF  M +  V  + V+ ++   A +    +++G
Sbjct: 316 LFDKMKLGNVRINKVSAVSAFLAAAETIDLEKG 348



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 2/136 (1%)

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD 311
           +IN+Y       +A  VF+      +I W+++I     +    +AL+++  M+   + PD
Sbjct: 69  LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPD 128

Query: 312 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFI 371
             TF  ++ AC+ G L  Q  + F        +   +   A +VDMY + G L+ A    
Sbjct: 129 KYTFTFVLKACT-GALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVF 187

Query: 372 REMPIEAEWSVWGALL 387
            +MP + +   W A++
Sbjct: 188 DKMP-KRDVVAWNAMI 202


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  300 bits (769), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 152/456 (33%), Positives = 271/456 (59%), Gaps = 9/456 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YTF   L ACS         ++H  +++ G   ++++Q++L+  Y    D+ +A  + 
Sbjct: 264 NQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNML 323

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHK 125
            ++   DVVSW +++ G  + G  +EA+ +F    G ++K +  T  SVL+ C  +V   
Sbjct: 324 ETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCC--VVGSI 381

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
             K++H   ++   EN  ++ NA++D Y + G +     +F KM +++V+SWT+++ GYA
Sbjct: 382 NPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYA 441

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH-SYISTRYDLSV 244
           +    +E++ +F +M  T    P++  + ++LSAC+ ++ L FGK VH  +I +   L  
Sbjct: 442 QNNSHEESLKIFCDMRVTG-VNPDQFIVASILSACAELTLLEFGKQVHLDFIKS--GLRW 498

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           S  V N+++ MY KCG +  A  +F  +  KD I+W+ +I G A NG GR +L+ +  M+
Sbjct: 499 SQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMV 558

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
            +   PD +TFI L+ ACSH GLVD+G   F+ M+ VY I P  +HYAC++D++GR+G L
Sbjct: 559 SSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKL 618

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           +EA+  + +M ++ + +VW +LL+ACR+H N E+ +R   +L   + ++   + ++SN +
Sbjct: 619 DEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELEPMNAMPYVMLSNMY 678

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           + + +W D  KIR  ++  G+ K+ GCSW+E+N  +
Sbjct: 679 SASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRV 714



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 199/390 (51%), Gaps = 23/390 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +T    L+ CS     Q    IH  V++ G   ++F+   L+  Y   K +  A  +F
Sbjct: 161 SQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLF 220

Query: 69  NSVVF--PDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVS 123
             + F   + V WT +++G ++ G   +A++ F  +    V+ N  T  ++L+ACSS+++
Sbjct: 221 KGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLA 280

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
              G+ +H   +++   +N+ + +A++D Y +CG L +   +   M   +VVSW +++ G
Sbjct: 281 RCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVG 340

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC--SSISALSFGKYVHSYISTRYD 241
           +   G  +EA+ +F+ M   +  + ++ T  +VL+ C   SI+     K VH  I  +  
Sbjct: 341 FVRHGLEEEALRLFKNMH-GRNMKIDDYTFPSVLNCCVVGSINP----KSVHGLI-IKTG 394

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
                LV NA+++MY K GD+  A  VF  +  KD ISW+++++G A N    ++L++F 
Sbjct: 395 FENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFC 454

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQG----LILFKAMSTVYEIVPQMQHYACVVDM 357
            M +  V PD     +++SAC+   L++ G    L   K+     + V     Y  +V M
Sbjct: 455 DMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSV-----YNSLVAM 509

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           Y + G L++A+A    M ++ +   W A++
Sbjct: 510 YAKCGCLDDADAIFVSMQVK-DVITWTAII 538



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 106/354 (29%), Positives = 185/354 (52%), Gaps = 17/354 (4%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID 103
           D +  N+++  YV V  +  A ++F+       ++W++IISG  K G   EA D+F  + 
Sbjct: 95  DEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMR 154

Query: 104 V---KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLA 160
           +   K +  TL SVL  CSSL   + G+ IH   ++N  E N+ +   ++D Y +C  ++
Sbjct: 155 LEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVS 214

Query: 161 SCGYLF--VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLS 218
              +LF  ++  ++N V WT M+ GYA+ G   +AV  F+ M   +  E N+ T   +L+
Sbjct: 215 EAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMH-AQGVECNQYTFPTILT 273

Query: 219 ACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI 278
           ACSS+ A  FG+ VH +I  +     +  V +A+++MY KCGD+  A  +   +   D +
Sbjct: 274 ACSSVLARCFGEQVHGFI-VKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVV 332

Query: 279 SWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQ---GLILF 335
           SW++++ G   +G   +AL+LF  M    +  DD TF ++++ C  G +  +   GLI+ 
Sbjct: 333 SWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIK 392

Query: 336 KAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
                 Y++V        +VDMY + G ++ A     +M +E +   W +L+  
Sbjct: 393 TGFEN-YKLVSN-----ALVDMYAKTGDMDCAYTVFEKM-LEKDVISWTSLVTG 439



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 130/299 (43%), Gaps = 59/299 (19%)

Query: 133 HSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE------ 186
           H+    +  +I   N +L+   + G +     LF KMP+++  SW TMI  Y        
Sbjct: 55  HTTTAASYESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVE 114

Query: 187 --------------------RGFCK-----EAVSVFQEMEKTKEAEPNEATLVNVLSACS 221
                                G+CK     EA  +F+ M + +  + ++ TL +VL  CS
Sbjct: 115 ARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSM-RLEGWKASQFTLGSVLRVCS 173

Query: 222 SISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY--KDKIS 279
           S+  +  G+ +H ++  +     +  V   +++MY KC  V  A  +F  L +  K+ + 
Sbjct: 174 SLGLIQTGEMIHGFV-VKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVL 232

Query: 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS-----------HGGLV 328
           W+ +++G A NG G +A++ F  M    V  +  TF  +++ACS           HG +V
Sbjct: 233 WTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIV 292

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
             G       S VY         + +VDMY + G L+ A+  +  M  +   S W +L+
Sbjct: 293 KSGF-----GSNVYV-------QSALVDMYAKCGDLKNAKNMLETMEDDDVVS-WNSLM 338


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  300 bits (769), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 151/453 (33%), Positives = 276/453 (60%), Gaps = 7/453 (1%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           +   L  C      ++   +HAH+I+  +   ++++  L+  Y   + +  A ++ + + 
Sbjct: 13  YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMP 72

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKA 129
             +VVSWT +ISG S+ G+  EA+ +F  +      PN  T  +VL++C+S    +LG+ 
Sbjct: 73  ERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQ 132

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           IH+  ++   E++I + +++LD Y + G +     +F  +P+R+VVS T +I GYA+ G 
Sbjct: 133 IHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGL 192

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
            +EA+ +F+ +++ +    N  T  +VL+A S ++AL  G+ VHS++  R  L    ++ 
Sbjct: 193 DEEALDLFRRLQR-EGMRSNYVTYASVLTALSGLAALDHGRQVHSHV-LRAKLPFYVVLQ 250

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII-NAV 308
           N++I+MY KCG +  + ++F+ +  +  ISW+ ++ G + +G GR+A++LF LM   N V
Sbjct: 251 NSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKV 310

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE-IVPQMQHYACVVDMYGRAGLLEEA 367
            PD VTF+A++S CSHGG+ D+GL +F  M    +   P+++HY CVVD++GRAG +EEA
Sbjct: 311 KPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEA 370

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
             FI++MP E   ++WG+LL ACR+H+N  + + + + L+  +  + G + ++SN +A A
Sbjct: 371 FEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASA 430

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            RW+D   +R+ ++   + K+ G SWIE++ ++
Sbjct: 431 GRWDDVRTVRELMKEKAVIKEPGRSWIELDQTL 463



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 128/224 (57%), Gaps = 3/224 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML   ++ N +TF   L +C+ +   Q   +IH+ VI+      IF+ +SLL  Y     
Sbjct: 102 MLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGK 161

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           I  A ++F+ +   DVVS T IISG ++ G  +EA+D+F  +    ++ N  T  SVL+A
Sbjct: 162 ICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTA 221

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
            S L +   G+ +H+H LR      ++L N+++D Y +CGSL     +F  MP+R V+SW
Sbjct: 222 LSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISW 281

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221
             M+ GY++ G  +EAV +F+ M++  + +P+  T + VLS CS
Sbjct: 282 NAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCS 325


>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 596

 Score =  300 bits (769), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 161/457 (35%), Positives = 260/457 (56%), Gaps = 10/457 (2%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           PS +      +A+     A+P Q     HAH++++G   D+F++NSL+  Y         
Sbjct: 102 PSRHTFPPLLKAVFKLRDANPFQ----FHAHILKFGFDSDLFVRNSLISGYSNCGLFEFG 157

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSL 121
            ++F+     DVVSWT +I G  +     EA+  F  +    V  N  T+VSVL A    
Sbjct: 158 SRVFDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYFVEMKRSGVAANEMTVVSVLKATRKA 217

Query: 122 VSHKLGKAIHAHSLRNLNEN-NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
              + G++IH   L       ++ + ++++D Y +CG       +F +MP RNVV+WT +
Sbjct: 218 EDVRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTAL 277

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           I GY +    ++ + VF+EM K+  A PNE TL +VLSAC+ + AL  G+ VH Y+  + 
Sbjct: 278 IAGYVQGRCFEKGMFVFEEMLKSDVA-PNEKTLSSVLSACAHVGALHRGRRVHCYV-IKN 335

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
            + ++  VG  +I+ Y KCG +  AI VF  L  K+  +W+ +I+G A +G    A+ LF
Sbjct: 336 SIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFAAHGYAIGAVDLF 395

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
             M+ + V P++VTFI ++SAC+HGGLV++G  LF +M   + + P+  HYAC+VD++GR
Sbjct: 396 HTMLSSHVSPNEVTFIVVLSACAHGGLVEEGRRLFLSMKERFNLEPKADHYACMVDLFGR 455

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
            GLLEEA+A I  MP+E   +VWGAL  +C IH++ E+       ++  +    G + L+
Sbjct: 456 KGLLEEAKALIERMPMEPTNAVWGALFGSCLIHKDYELGKYAASRVIKLQPSHSGRYTLL 515

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +N ++ +  W+D  ++R +++   + K  GCSWIEV 
Sbjct: 516 ANLYSESQNWDDVARVRKQMKDQQVVKSPGCSWIEVK 552



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 7/188 (3%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    + N  T +  L AC+      +   +H +VI+     +  +  +L+ FY     
Sbjct: 297 MLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGC 356

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           +  A  +F  +   +V +WT +I+G +  G+   A+D+F  +    V PN  T + VLSA
Sbjct: 357 LEEAILVFERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSA 416

Query: 118 CSSLVSHKLGKAIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMPKR--NV 174
           C+     + G+ +        N E        ++D + R G L     L  +MP    N 
Sbjct: 417 CAHGGLVEEGRRLFLSMKERFNLEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNA 476

Query: 175 VSWTTMIG 182
           V W  + G
Sbjct: 477 V-WGALFG 483


>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 634

 Score =  300 bits (769), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 170/488 (34%), Positives = 270/488 (55%), Gaps = 39/488 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +T    LKACS A   + AL  H   I+ G++  +F+ N+LLH   +   +  + ++F
Sbjct: 106 NEFTLPFVLKACSRARAAEHALATHGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLF 165

Query: 69  NSVV-FPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSH 124
             +    +VVSW T+I G ++ G   EA  +F  +    V  +  T VS+L  CS   + 
Sbjct: 166 AEMAPHRNVVSWNTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNL 225

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCG-------------------------SL 159
           ++G+ +H H L + +  ++IL NA++D Y +CG                         +L
Sbjct: 226 EVGRLVHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCAL 285

Query: 160 ASCGYL------FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATL 213
           A  G +      F +MP+RN++SW  MI  Y + G   E + ++  M K+    P+E TL
Sbjct: 286 AKHGSVDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYNRM-KSLGLTPDEVTL 344

Query: 214 VNVLSACSSISALSFGKYVHSYISTRY-DLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 272
             VLS       L+ G+ +H YI   + D  V+ L  N++I+MY +CG V  +I +F  +
Sbjct: 345 AGVLSVHGQNGDLASGRMIHCYIQDSFSDPGVTVL--NSLIDMYARCGQVDTSISLFTEM 402

Query: 273 AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL 332
             K+ ISW+ +I  LAM+G  ++A+  F  M+ +A  PD++TF+ L+SACSHGGL++ G 
Sbjct: 403 PNKNTISWNVIIGALAMHGRAQEAVMFFRAMVSDAFSPDEITFVGLLSACSHGGLLEDGQ 462

Query: 333 ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI 392
             FKAM  +Y + P+++HYAC+VD+ GR G L +A   I++MP++ +  VWGAL+ ACRI
Sbjct: 463 YYFKAMRHIYNVKPEVEHYACMVDLLGRHGHLAKAVDLIKDMPMKPDVVVWGALIGACRI 522

Query: 393 HRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCS 452
           H + E+     + L+  +G++ G F L+SN      +WED  ++R  +R  G KK  G S
Sbjct: 523 HGHVEIGKLAIKQLLELEGINGGLFVLISNLLYETRQWEDMKRLRKLMRDRGTKKDMGVS 582

Query: 453 WIEVNPSI 460
            IE+N SI
Sbjct: 583 SIEINNSI 590



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 193/407 (47%), Gaps = 51/407 (12%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKD------IFSAHQIFNSVVFPDVVSWTTIIS 84
           ++HAH++ +G      +   L+  Y  +        +  A ++F+ V  PD  ++ ++I 
Sbjct: 21  QLHAHLLAHGPSAVASVVPQLVASYCALSGRAGDVALCHARRMFDRVPDPDRFAYNSLIR 80

Query: 85  GLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNEN 141
             S  G  +EA+ +   +    + PN  TL  VL ACS   + +   A H  +++     
Sbjct: 81  AYSNSGCPQEALCLHRDVLRRGILPNEFTLPFVLKACSRARAAEHALATHGVAIKLGYVR 140

Query: 142 NIILDNAILDFYIRCGSLASCGYLFVKM-PKRNVVSWTTMIGGYAERGFCKEAVSVFQEM 200
            + + NA+L      GSL     LF +M P RNVVSW TMIGG A+ G   EA ++F+EM
Sbjct: 141 QVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQAGETSEACALFREM 200

Query: 201 EKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI---STRYDLSVSNLVGNAVINMYV 257
            + +    +  T V++L  CS    L  G+ VH ++    +R DL    ++GNA+++MY 
Sbjct: 201 RR-QGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGSRVDL----ILGNALVDMYG 255

Query: 258 KCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC------------------------- 292
           KCGD+ +A + F+++  K+ +SW++++  LA +G                          
Sbjct: 256 KCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHGSVDAARDWFEQMPERNIISWNAMISC 315

Query: 293 ----GR--QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 346
               GR  + L L++ M    + PD+VT   ++S     G +  G ++   +   +   P
Sbjct: 316 YVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLASGRMIHCYIQDSFSD-P 374

Query: 347 QMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
            +     ++DMY R G ++ + +   EMP +   S W  ++ A  +H
Sbjct: 375 GVTVLNSLIDMYARCGQVDTSISLFTEMPNKNTIS-WNVIIGALAMH 420



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 138/294 (46%), Gaps = 10/294 (3%)

Query: 155 RCGSLASC--GYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEAT 212
           R G +A C    +F ++P  +  ++ ++I  Y+  G  +EA+ + +++ + +   PNE T
Sbjct: 51  RAGDVALCHARRMFDRVPDPDRFAYNSLIRAYSNSGCPQEALCLHRDVLR-RGILPNEFT 109

Query: 213 LVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF-NM 271
           L  VL ACS   A       H  ++ +        VGNA+++     G +  + ++F  M
Sbjct: 110 LPFVLKACSRARAAEHALATHG-VAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEM 168

Query: 272 LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
             +++ +SW+T+I G A  G   +A  LF  M    V  D  TF++L+  CS  G ++ G
Sbjct: 169 APHRNVVSWNTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVG 228

Query: 332 LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACR 391
            ++   M      V  +   A +VDMYG+ G L  A      MPI+   S W ++L A  
Sbjct: 229 RLVHCHMLASGSRVDLILGNA-LVDMYGKCGDLWMAHRCFDVMPIKNVVS-WTSMLCALA 286

Query: 392 IHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445
            H +    D  R         ++ ++  M + +    R+ +T  + + ++ +GL
Sbjct: 287 KHGS---VDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGL 337


>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
 gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
          Length = 566

 Score =  300 bits (769), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 155/481 (32%), Positives = 271/481 (56%), Gaps = 36/481 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           ++ TF   LKAC+  +   +  ++H H+ + G L DIF+ NSL+H Y    ++  A  +F
Sbjct: 86  DNLTFPFILKACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVF 145

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           + +V  DVVSW ++I G S+C   K+ + +F  +    VK +  T++ V+SAC+ L  + 
Sbjct: 146 DEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYS 205

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKM---------------- 169
           +   +  +      E ++ L N ++D++ R G L S   +F  M                
Sbjct: 206 MADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYA 265

Query: 170 ---------------PKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
                          PK++++SW++MI GY++     +A+ +F++M++ K  +P+   + 
Sbjct: 266 KGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAK-VKPDAIVIA 324

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
           +V+S+C+ + AL  GK+VH Y+  R ++    ++ N++I+MY+KCG    A+QVF  +  
Sbjct: 325 SVVSSCAHLGALDLGKWVHEYVR-RNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKE 383

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           KD +SW+++I GLA NG  +++L LF  M+     P+ VTF+ ++ AC++  LV++GL  
Sbjct: 384 KDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDH 443

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F++M  +Y + PQM+HY CVVD+ GRAG LE+A  FI EMPI+ +  VW  LL +C  H 
Sbjct: 444 FESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHG 503

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           +  + + + + L   +  + G + L+SN +A A RW +   +R  +    ++K  GCS +
Sbjct: 504 DVAIAEIVTKKLNELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDVRKSPGCSAV 563

Query: 455 E 455
           E
Sbjct: 564 E 564



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 191/397 (48%), Gaps = 49/397 (12%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVK-DIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
            +HA+ I  G  +  +  + +L  Y  ++ D+  AH++F+ +  P    W  +I GL++ 
Sbjct: 6   RLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIRGLAQS 65

Query: 90  GFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
               +AI  +    G  + P+  T   +L AC+ + +   G+ +H H  +    ++I + 
Sbjct: 66  DAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLSDIFVS 125

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           N+++  Y  CG+L     +F +M  ++VVSW ++I GY++    K+ +++F+ M+  +  
Sbjct: 126 NSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQ-NEGV 184

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTR--------------------------- 239
           + ++ T++ V+SAC+ +   S   Y+  YI                              
Sbjct: 185 KADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEK 244

Query: 240 --YDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
             +++ V N+V  NA+I  Y K  D+  A ++F+ +  KD ISWS++ISG +       A
Sbjct: 245 VFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDA 304

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA---- 352
           L++F  M    V PD +   +++S+C+H G +D G         V+E V +    A    
Sbjct: 305 LEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLG-------KWVHEYVRRNNIKADTIM 357

Query: 353 --CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
              ++DMY + G  +EA    +EM  E +   W +++
Sbjct: 358 ENSLIDMYMKCGSAKEALQVFKEMK-EKDTLSWNSII 393


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 152/460 (33%), Positives = 265/460 (57%), Gaps = 15/460 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +T +  +   +     +    IH  + +YG   D  + N L+  Y+  + +   +++F
Sbjct: 151 NQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVF 210

Query: 69  NSVVFPDVVSWTTIISGL---SKCG-----FHKEAIDMFCGIDVKPNANTLVSVLSACSS 120
            ++  PD+VSW  ++SG      CG     F++  ++ F     KPN  T +SVL +CSS
Sbjct: 211 EAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGF-----KPNMFTFISVLRSCSS 265

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           L+  + GK +HAH ++N ++++  +  A++D Y +   L   G  F ++  R++ SWT +
Sbjct: 266 LLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVI 325

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           I GYA+    ++AV  F++M++ +  +PNE TL + LS CS ++ L  G+ +H+ ++ + 
Sbjct: 326 ISGYAQTDQAEKAVKYFRQMQR-EGIKPNEYTLASCLSGCSHMATLENGRQLHA-VAVKA 383

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
                  VG+A++++Y KCG +  A  +F  L  +D +SW+T+ISG + +G G +AL+ F
Sbjct: 384 GHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAF 443

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
            +M+   + PD+ TFI ++SACS  GLV++G   F +MS +Y I P ++HYAC+VD+ GR
Sbjct: 444 RMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGR 503

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           AG   E + FI EM +     +W  +L AC++H N +  ++  + L   + +   ++ L+
Sbjct: 504 AGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILL 563

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           SN FA   RW+D   IR  +   G+KK+ GCSW+EV+  +
Sbjct: 564 SNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVDGQV 603



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 203/409 (49%), Gaps = 25/409 (6%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M  C + ++ +T +  LK C+     ++   +HA  +  G   D F+  SL+  Y     
Sbjct: 42  MKECETKFSKFTLSTVLKGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGT 101

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSA 117
           ++ A ++F  +  PDVV+W+ +I+GL + G  +EA ++F  +  K   PN  TL S++S 
Sbjct: 102 VYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVST 161

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
            +++   + G++IH    +   E++ ++ N ++  Y++   +     +F  M   ++VSW
Sbjct: 162 ATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSW 221

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
             ++ G+ +   C     +F +M   +  +PN  T ++VL +CSS+    FGK VH++I 
Sbjct: 222 NALLSGFYDSQTCGRGPRIFYQM-LLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHI- 279

Query: 238 TRYDLSVSNLVGNAVINMYVKC---GDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
            +      + VG A+++MY K     D G+A   F+ L  +D  SW+ +ISG A      
Sbjct: 280 IKNSSDDDDFVGTALVDMYAKARCLEDAGVA---FDRLVNRDIFSWTVIISGYAQTDQAE 336

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY--- 351
           +A++ F  M    + P++ T  + +S CSH   ++ G         ++ +  +  H+   
Sbjct: 337 KAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENG-------RQLHAVAVKAGHFGDI 389

Query: 352 ---ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
              + +VD+YG+ G +E AEA  + + I  +   W  +++    H   E
Sbjct: 390 FVGSALVDLYGKCGCMEHAEAIFKGL-ISRDIVSWNTIISGYSQHGQGE 437



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 167/314 (53%), Gaps = 20/314 (6%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 120
           A ++F  +   + VSW  +++G ++ G  K+ + +FC +   + K +  TL +VL  C++
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCAN 63

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
             S + GK +HA +LR+  E +  L  +++D Y +CG++     +F K+   +VV+W+ M
Sbjct: 64  TGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAM 123

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           I G  ++G  +EA  +F  M + K A PN+ TL +++S  +++  L +G+ +H  I  +Y
Sbjct: 124 ITGLDQQGHGQEAAELFHLMRR-KGARPNQFTLSSLVSTATNMGDLRYGQSIHGCI-CKY 181

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGL-AMNGCGRQALQL 299
                NLV N +I MY+K   V    +VF  +   D +SW+ ++SG      CGR   ++
Sbjct: 182 GFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGR-GPRI 240

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLI------LFKAMSTVYEIVPQMQHYAC 353
           F  M++    P+  TFI+++ +CS   L+D          + K  S   + V        
Sbjct: 241 FYQMLLEGFKPNMFTFISVLRSCS--SLLDPEFGKQVHAHIIKNSSDDDDFVG-----TA 293

Query: 354 VVDMYGRAGLLEEA 367
           +VDMY +A  LE+A
Sbjct: 294 LVDMYAKARCLEDA 307



 Score = 39.7 bits (91), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 5/106 (4%)

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
           +A ++F  +  K+ +SW+ +++G A  G G++ L+LF  M          T   ++  C+
Sbjct: 3   LAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCA 62

Query: 324 HGGLVDQGLILFK-AMSTVYEIVPQMQHYAC-VVDMYGRAGLLEEA 367
           + G + +G +L   A+ +  EI    +   C +VDMY + G + +A
Sbjct: 63  NTGSLREGKVLHALALRSGCEID---EFLGCSLVDMYSKCGTVYDA 105


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 156/452 (34%), Positives = 269/452 (59%), Gaps = 11/452 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L A +  +  ++  EIH +++      D+F+ ++L+  Y   +D+  A  +F++ 
Sbjct: 351 TLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDAT 410

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGK 128
              DVV  +T+ISG       + A+ MF     + +KPNA  + S L AC+S+ + ++G+
Sbjct: 411 KSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQ 470

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H + L+N  E    +++A++D Y +CG L    Y+F KM  ++ V+W +MI  +A+ G
Sbjct: 471 ELHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNG 530

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI---STRYDLSVS 245
             +EA+ +F++M   +  + N  T+ ++LSAC+ + A+ +GK +H  I     R DL   
Sbjct: 531 EPEEALDLFRQM-IMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPIRADL--- 586

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
               +A+I+MY KCG++ +A++VF  +  K+++SW+++IS    +G  ++++ L   M  
Sbjct: 587 -FAESALIDMYGKCGNLELALRVFEHMPEKNEVSWNSIISAYGAHGLVKESVDLLCCMQE 645

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
                D VTF+ALISAC+H G V +GL LF+ M+  Y I PQ++H +C+VD+Y RAG L+
Sbjct: 646 EGFKADHVTFLALISACAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGKLD 705

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           +A  FI +MP + +  +WGALL+ACR+HRN E+ +   Q+L      + G + LMSN  A
Sbjct: 706 KAMQFIADMPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNCGYYVLMSNINA 765

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            A RW+  +K+R  ++   ++K  G SW++VN
Sbjct: 766 VAGRWDGVSKMRRLMKDKKVQKIPGYSWVDVN 797



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 109/393 (27%), Positives = 204/393 (51%), Gaps = 17/393 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L  C+        +++H   ++YG   ++ + N+L+  Y   + +  A ++F
Sbjct: 247 NFATLACFLSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLF 306

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   D+V+W  +ISG  + G   +A+ +FC +    ++P++ TL S+L A + L   K
Sbjct: 307 GLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFK 366

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK IH + +RN    ++ L +A++D Y +C  +     +F      +VV  +TMI GY 
Sbjct: 367 QGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYV 426

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
                + AV +F+ +      +PN   + + L AC+S++A+  G+ +H Y+  +      
Sbjct: 427 LNRMSEAAVKMFRYLLALG-IKPNAVMVASTLPACASMAAMRIGQELHGYV-LKNAYEGR 484

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V +A+++MY KCG + ++  +F+ ++ KD+++W+++IS  A NG   +AL LF  MI+
Sbjct: 485 CYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIM 544

Query: 306 NAVFPDDVTFIALISACS-----HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
             V  ++VT  +++SAC+     + G    G+I+         I   +   + ++DMYG+
Sbjct: 545 EGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKG------PIRADLFAESALIDMYGK 598

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
            G LE A      MP + E S W ++++A   H
Sbjct: 599 CGNLELALRVFEHMPEKNEVS-WNSIISAYGAH 630



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 191/409 (46%), Gaps = 15/409 (3%)

Query: 3   SCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIF 62
           S P    H T    +K+C+          +H      G   D+++ ++L+  Y     + 
Sbjct: 141 SSPRPDGH-TLPYVVKSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLD 199

Query: 63  SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSA 117
            A ++F+ +   D V W  ++ G  K G    A+ +F      G D  PN  TL   LS 
Sbjct: 200 GAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCD--PNFATLACFLSV 257

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C++      G  +H  +++   E  + + N ++  Y +C  L     LF  MP+ ++V+W
Sbjct: 258 CAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTW 317

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
             MI G  + G   +A+ +F +M+K+   +P+  TL ++L A + ++    GK +H YI 
Sbjct: 318 NGMISGCVQNGLVDDALRLFCDMQKSG-LQPDSVTLASLLPALTELNGFKQGKEIHGYI- 375

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            R    V   + +A++++Y KC DV +A  VF+     D +  ST+ISG  +N     A+
Sbjct: 376 VRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAV 435

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFK-AMSTVYEIVPQMQHYACVVD 356
           ++F  ++   + P+ V   + + AC+    +  G  L    +   YE    ++  + ++D
Sbjct: 436 KMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVE--SALMD 493

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDRIRQ 404
           MY + G L+ +     +M  + E + W +++++  +    +E  D  RQ
Sbjct: 494 MYSKCGRLDLSHYMFSKMSAKDEVT-WNSMISSFAQNGEPEEALDLFRQ 541



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 159/335 (47%), Gaps = 17/335 (5%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLH-----DIFIQNSLLHFYVTVKDIFSAH 65
           Y     L+ C         L IHA  +  G L         +Q  L+  YV  +    A 
Sbjct: 37  YRLLALLRGCVAPSHLPLGLRIHARAVTSGLLDAAGPGPAALQTRLVGMYVLARRFRDAV 96

Query: 66  QIFNSV---VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI-----DVKPNANTLVSVLSA 117
            +F+S+        + W  +I G +  G H+ A+  +  +       +P+ +TL  V+ +
Sbjct: 97  AVFSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKS 156

Query: 118 CSSLVSHKLGKAIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
           C++L +  LG+ +H  + R L  + ++ + +A++  Y   G L     +F  M +R+ V 
Sbjct: 157 CAALGALHLGRLVH-RTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVL 215

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           W  M+ GY + G    AV +F+ M +    +PN ATL   LS C++ + L  G  +H+ +
Sbjct: 216 WNVMMDGYVKAGDVASAVGLFRVM-RASGCDPNFATLACFLSVCAAEADLLSGVQLHT-L 273

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
           + +Y L     V N +++MY KC  +  A ++F ++   D ++W+ +ISG   NG    A
Sbjct: 274 AVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDA 333

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
           L+LF  M  + + PD VT  +L+ A +      QG
Sbjct: 334 LRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQG 368



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 129/298 (43%), Gaps = 14/298 (4%)

Query: 103 DVKPNANTLVSVLSACSSLVSHKLGKAIHAHS-----LRNLNENNIILDNAILDFYIRCG 157
           +  P A  L+++L  C +     LG  IHA +     L         L   ++  Y+   
Sbjct: 31  NASPCAYRLLALLRGCVAPSHLPLGLRIHARAVTSGLLDAAGPGPAALQTRLVGMYVLAR 90

Query: 158 SLASCGYLFVKMPKRNV---VSWTTMIGGYAERGFCKEAVSVFQEM-EKTKEAEPNEATL 213
                  +F  +P+      + W  +I G+   G  + AV  + +M        P+  TL
Sbjct: 91  RFRDAVAVFSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTL 150

Query: 214 VNVLSACSSISALSFGKYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 272
             V+ +C+++ AL  G+ VH   +TR   L     VG+A+I MY   G +  A +VF+ +
Sbjct: 151 PYVVKSCAALGALHLGRLVHR--TTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGM 208

Query: 273 AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL 332
             +D + W+ ++ G    G    A+ LF +M  +   P+  T    +S C+    +  G+
Sbjct: 209 DERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGV 268

Query: 333 ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 390
            L   ++  Y + P++     +V MY +   LEEA      MP + +   W  +++ C
Sbjct: 269 QL-HTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRD-DLVTWNGMISGC 324


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 140/358 (39%), Positives = 240/358 (67%), Gaps = 2/358 (0%)

Query: 103 DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC 162
           +++P+  T+VS++ AC+ L + + GK +H++S     + N+ ++NAILD Y +C  + S 
Sbjct: 6   NLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESA 65

Query: 163 GYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS 222
             +F ++ +++V+SWT+M+ G A+ G+ +E++++F++M+  K  EP+E TLV VLSAC+ 
Sbjct: 66  QEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHK-IEPDEITLVGVLSACAQ 124

Query: 223 ISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWST 282
             AL  GKY+H  I  +++++   ++  A+++MY KCG + +A+QVF  +  ++  +W+ 
Sbjct: 125 TGALDQGKYIHLLID-KFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNA 183

Query: 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 342
           +I GLAM+G G  A+ LF  M  + + PDDVTFIAL+ ACSH GLVD+GL +F+AM   +
Sbjct: 184 MIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKF 243

Query: 343 EIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRI 402
           +I P+M+HY CVVD+  RA  +++A AFI  MPI+A   +W  LL ACR   + ++ ++I
Sbjct: 244 QIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKI 303

Query: 403 RQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            + ++  +  S G + ++SN +AG  +W+   K+R +++  G++K  GCSWIE+N  I
Sbjct: 304 XRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMI 361



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 150/287 (52%), Gaps = 5/287 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +  T    + AC+     ++   +H++  E G   ++ + N++L  Y    DI SA ++F
Sbjct: 10  DEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQEVF 69

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           N +   DV+SWT+++SGL+K G+ +E++ +F  +    ++P+  TLV VLSAC+   +  
Sbjct: 70  NRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGALD 129

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK IH    +     +++L+ A++D Y +CGS+     +F +M  RNV +W  MIGG A
Sbjct: 130 QGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLA 189

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G  ++A+S+F +ME  K   P++ T + +L ACS    +  G  +   +  ++ +   
Sbjct: 190 MHGHGEDAISLFDQMEXDK-LMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPR 248

Query: 246 NLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDKISWSTVISGLAMNG 291
                 V+++  +   V  A+  + NM    + + W+T++      G
Sbjct: 249 MEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGG 295



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 120/210 (57%), Gaps = 7/210 (3%)

Query: 200 MEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKC 259
           M K     P+E T+V+++ AC+ +  L  GK +HSY S    L  +  V NA+++MY KC
Sbjct: 1   MTKLDNLRPDEVTMVSLVPACAQLGNLERGKLLHSY-SKELGLDENLSVNNAILDMYCKC 59

Query: 260 GDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALI 319
            D+  A +VFN +  KD +SW++++SGLA +G  +++L LF  M ++ + PD++T + ++
Sbjct: 60  DDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVL 119

Query: 320 SACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAE 379
           SAC+  G +DQG  +   +   +EI   +     +VDMY + G ++ A    R M +   
Sbjct: 120 SACAQTGALDQGKYIHLLIDK-FEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNV 178

Query: 380 WSVWGALLNACRIHRNDE----MFDRIRQD 405
           ++ W A++    +H + E    +FD++  D
Sbjct: 179 FT-WNAMIGGLAMHGHGEDAISLFDQMEXD 207


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 151/453 (33%), Positives = 276/453 (60%), Gaps = 7/453 (1%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           +   L  C      ++   +HAH+I+  +   ++++  L+  Y   + +  A ++ + + 
Sbjct: 480 YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMP 539

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKA 129
             +VVSWT +ISG S+ G+  EA+ +F  +      PN  T  +VL++C+S    +LG+ 
Sbjct: 540 ERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQ 599

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           IH+  ++   E++I + +++LD Y + G +     +F  +P+R+VVS T +I GYA+ G 
Sbjct: 600 IHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGL 659

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
            +EA+ +F+ +++ +    N  T  +VL+A S ++AL  G+ VHS++  R  L    ++ 
Sbjct: 660 DEEALDLFRRLQR-EGMRSNYVTYASVLTALSGLAALDHGRQVHSHV-LRAKLPFYVVLQ 717

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII-NAV 308
           N++I+MY KCG +  + ++F+ +  +  ISW+ ++ G + +G GR+A++LF LM   N V
Sbjct: 718 NSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKV 777

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE-IVPQMQHYACVVDMYGRAGLLEEA 367
            PD VTF+A++S CSHGG+ D+GL +F  M    +   P+++HY CVVD++GRAG +EEA
Sbjct: 778 KPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEA 837

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
             FI++MP E   ++WG+LL ACR+H+N  + + + + L+  +  + G + ++SN +A A
Sbjct: 838 FEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASA 897

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            RW+D   +R+ ++   + K+ G SWIE++ ++
Sbjct: 898 GRWDDVRTVRELMKEKAVIKEPGRSWIELDQTL 930



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 128/224 (57%), Gaps = 3/224 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML   ++ N +TF   L +C+ +   Q   +IH+ VI+      IF+ +SLL  Y     
Sbjct: 569 MLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGK 628

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           I  A ++F+ +   DVVS T IISG ++ G  +EA+D+F  +    ++ N  T  SVL+A
Sbjct: 629 ICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTA 688

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
            S L +   G+ +H+H LR      ++L N+++D Y +CGSL     +F  MP+R V+SW
Sbjct: 689 LSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISW 748

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221
             M+ GY++ G  +EAV +F+ M++  + +P+  T + VLS CS
Sbjct: 749 NAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCS 792


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 164/451 (36%), Positives = 260/451 (57%), Gaps = 11/451 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T+   L AC      +K  +IHA ++E  H  D+ +  +L   Y+    +  A ++F  +
Sbjct: 248 TYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECL 307

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMF------CGIDVKPNANTLVSVLSACSSLVSHK 125
              DV++W T+I GL   G  +EA  MF      C   V P+  T +++LSAC+      
Sbjct: 308 PNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKEC---VAPDRVTYLAILSACARPGGLA 364

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK IHA ++++   +++   NA+++ Y + GS+     +F +MPKR+VVSWT ++GGYA
Sbjct: 365 CGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYA 424

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G   E+ S F++M + +  E N+ T + VL ACS+  AL +GK +H+ +  +  +   
Sbjct: 425 DCGQVVESFSTFKKMLQ-QGVEANKITYMCVLKACSNPVALKWGKEIHAEV-VKAGIFAD 482

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V NA+++MY KCG V  AI+V   ++ +D ++W+T+I GLA NG G +ALQ F +M  
Sbjct: 483 LAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKS 542

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             + P+  TF+ ++SAC    LV++G   F +M   Y IVP  +HYAC+VD+  RAG L 
Sbjct: 543 EEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLG 602

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EAE  I  MP +   ++WGALL ACR H N E+ ++  +  +  +  + GT+  +S  +A
Sbjct: 603 EAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYA 662

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
            A  W D  K+R  ++  G+KK+ G SWIEV
Sbjct: 663 AAGMWRDVAKLRKLMKERGVKKEPGRSWIEV 693



 Score =  214 bits (544), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 127/391 (32%), Positives = 212/391 (54%), Gaps = 15/391 (3%)

Query: 6   SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAH 65
           S  + Y + + L++C  A       ++H H++ +G   +++I N+LL  YV    +  A 
Sbjct: 40  SQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEAR 99

Query: 66  QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLV 122
           ++F+      VVSW  +ISG +  G  +EA ++F  +    ++P+  T VS+LSACSS  
Sbjct: 100 RLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPA 159

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
           +   G+ +H   +     NN  + NA++  Y +CGS+     +F  M  R+ VSWTT+ G
Sbjct: 160 ALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTG 219

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI---STR 239
            YAE G+ +E++  +  M + +   P+  T +NVLSAC S++AL  GK +H+ I      
Sbjct: 220 AYAESGYAQESLKTYHAMLQ-EGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHH 278

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
            D+ VS     A+  MY+KCG V  A +VF  L  +D I+W+T+I GL  +G   +A  +
Sbjct: 279 SDVRVS----TALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGM 334

Query: 300 FSLMIINAVFPDDVTFIALISACSH-GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMY 358
           F  M+   V PD VT++A++SAC+  GGL     I  +A+     +V  ++    +++MY
Sbjct: 335 FHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKD--GLVSDVRFGNALINMY 392

Query: 359 GRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
            +AG +++A      MP + +   W AL+  
Sbjct: 393 SKAGSMKDARQVFDRMP-KRDVVSWTALVGG 422



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 175/319 (54%), Gaps = 5/319 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +TF   L ACS         E+H  V+E G  ++  + N+L+  Y     +  A ++F
Sbjct: 144 DKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVF 203

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           +++   D VSWTT+    ++ G+ +E++  +  +    V+P+  T ++VLSAC SL + +
Sbjct: 204 DAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALE 263

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK IHA  + + + +++ +  A+   YI+CG++     +F  +P R+V++W TMIGG  
Sbjct: 264 KGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLV 323

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G  +EA  +F  M K   A P+  T + +LSAC+    L+ GK +H+  + +  L   
Sbjct: 324 DSGQLEEAHGMFHRMLKECVA-PDRVTYLAILSACARPGGLACGKEIHAR-AVKDGLVSD 381

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
              GNA+INMY K G +  A QVF+ +  +D +SW+ ++ G A  G   ++   F  M+ 
Sbjct: 382 VRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQ 441

Query: 306 NAVFPDDVTFIALISACSH 324
             V  + +T++ ++ ACS+
Sbjct: 442 QGVEANKITYMCVLKACSN 460


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 161/487 (33%), Positives = 263/487 (54%), Gaps = 39/487 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N Y+F  AL AC+     +   ++H  V    H  D+ I  +L+  Y   +    A ++F
Sbjct: 150 NAYSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVF 209

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHK 125
           +++   +VVSW ++I+   + G   EA+ +F  +      P+  TL SV+SAC+ L + +
Sbjct: 210 DAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAER 269

Query: 126 LGKAIHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
            G+ +HAH + R+   ++++L+NA++D Y +CG       +F  MP R+VVS T+++ GY
Sbjct: 270 EGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGY 329

Query: 185 AERGFCKEAVSVFQEM----------------EKTKEAE--------------PNEATLV 214
           A+    ++A  VF +M                +  +E E              P   T  
Sbjct: 330 AKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYG 389

Query: 215 NVLSACSSISALSFGKYVHSYI---STRYDLSVSN--LVGNAVINMYVKCGDVGIAIQVF 269
           NVL+AC +I+ L  G+  H ++     R+D    +   VGN++++MY+K G +    +VF
Sbjct: 390 NVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVF 449

Query: 270 NMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVD 329
             +A +D +SW+ +I G A NG  + AL LF  M+ +   PD VT I ++SAC H GLVD
Sbjct: 450 ERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVD 509

Query: 330 QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           +G   F  M+  + I P   HY C+VD+ GRAG L+EAE  I++MP E +  +W +LL A
Sbjct: 510 EGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGA 569

Query: 390 CRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKT 449
           CR+H+N E+ +R    L      + G + L+SN +A   +W D  ++R  ++  G+ K+ 
Sbjct: 570 CRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQP 629

Query: 450 GCSWIEV 456
           GCSWIE+
Sbjct: 630 GCSWIEI 636



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 184/387 (47%), Gaps = 43/387 (11%)

Query: 42  LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK--CGFHKEAIDMF 99
           L + F  N+LL  Y  +     A  +F ++  PD  S+  +++ L++   G   +A+   
Sbjct: 80  LRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFL 139

Query: 100 CGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRC 156
             +   D   NA +  S LSAC++    + G+ +H    R+ + +++ +  A++D Y +C
Sbjct: 140 AAMHADDFVLNAYSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKC 199

Query: 157 GSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNV 216
                   +F  MP+RNVVSW ++I  Y + G   EA+ +F EM  T    P+E TL +V
Sbjct: 200 ERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATG-FFPDEVTLSSV 258

Query: 217 LSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCG---------------- 260
           +SAC+ ++A   G+ VH+++  R  L    ++ NA+++MY KCG                
Sbjct: 259 MSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRS 318

Query: 261 ---------------DVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
                          +V  A  VF+ +  K+ I+W+ +I+  A NG   +A++LF  +  
Sbjct: 319 VVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKR 378

Query: 306 NAVFPDDVTFIALISACSHGGLV---DQGLILFKAMSTVYEIVPQMQHYA--CVVDMYGR 360
           ++++P   T+  +++AC +  ++    Q  +        ++  P+   +    +VDMY +
Sbjct: 379 DSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLK 438

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALL 387
            G +++       M      S W A++
Sbjct: 439 TGSIDDGAKVFERMAARDNVS-WNAMI 464



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 126/300 (42%), Gaps = 36/300 (12%)

Query: 108 ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFV 167
           ++ L  +L +  SL      +A H   L++       L N ++  Y R G L     +F 
Sbjct: 20  SSPLADLLRSAPSLPG---ARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFD 76

Query: 168 KMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEA---------------- 211
            +P RN  S+  ++  YA  G   EA ++F+ +    +   N                  
Sbjct: 77  GIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDAL 136

Query: 212 ----------------TLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINM 255
                           +  + LSAC++   L  G+ VH  ++ R   +    +G A+++M
Sbjct: 137 RFLAAMHADDFVLNAYSFASALSACAAEKDLRTGEQVHGLVA-RSPHADDVHIGTALVDM 195

Query: 256 YVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTF 315
           Y KC     A +VF+ +  ++ +SW+++I+    NG   +AL LF  M+    FPD+VT 
Sbjct: 196 YAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTL 255

Query: 316 IALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP 375
            +++SAC+      +G  +   M     +   M     +VDMY + G   EA      MP
Sbjct: 256 SSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMP 315


>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
          Length = 526

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 153/435 (35%), Positives = 264/435 (60%), Gaps = 38/435 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYV------------ 56
           N YTF   LK+C+ +   ++  +IH HV++ G+  D+++  SL+  YV            
Sbjct: 87  NCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVF 146

Query: 57  ---TVKDIFS----------------AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAID 97
              + +D+ S                A ++F+ +   DVVSW  +ISG ++ G +KEA++
Sbjct: 147 DQSSHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALE 206

Query: 98  MFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
           +F  +   +V+P+ +T+V+V+SAC+   S +LG+ +H     +   +N+ + NA++D Y 
Sbjct: 207 LFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYS 266

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           +CG + +   LF  +  ++V+SW T+IGGY      KEA+ +FQEM ++ E+ PN+ T++
Sbjct: 267 KCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES-PNDVTML 325

Query: 215 NVLSACSSISALSFGKYVHSYISTRYD--LSVSNLVGNAVINMYVKCGDVGIAIQVFNML 272
           ++L AC+ + A+  G+++H YI+ R     + S+L+  ++I+MY KCGD+  A QVF+ +
Sbjct: 326 SILPACAHLGAIDIGRWIHVYINKRLKGVTNASSLL-TSLIDMYAKCGDIEAAKQVFDSM 384

Query: 273 AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL 332
             +   SW+ +I G AM+G    A  LFS M  N + PDD+TF+ L+SACSH G++D G 
Sbjct: 385 LTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGR 444

Query: 333 ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI 392
            +F++MS  Y+I P+++HY C++D+ G  GL +EA+  IR MP+E +  +W +LL AC++
Sbjct: 445 HIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKM 504

Query: 393 HRNDEMFDRIRQDLV 407
           H N E+ +   Q+L+
Sbjct: 505 HNNVELGESYAQNLI 519



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 121/275 (44%), Gaps = 39/275 (14%)

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGY---LFVKMPKRNVVSWTTMIGGY 184
           + IHA  ++    N     + +++F +         Y   +F  + + N++ W TM  G+
Sbjct: 4   RMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 63

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLS 243
           A       A+ ++  M  +    PN  T   +L +C+   A   G+ +H ++    YDL 
Sbjct: 64  ALSSDPVSALYLYVCM-ISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLD 122

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNM-------------------------------L 272
           +   V  ++I+MYV+ G +  A +VF+                                +
Sbjct: 123 L--YVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALIKGYASRGYIENAQKLFDEI 180

Query: 273 AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL 332
             KD +SW+ +ISG A  G  ++AL+LF  M+   V PD+ T + ++SAC+  G ++ G 
Sbjct: 181 PVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGR 240

Query: 333 ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
            +   +   +     ++    ++D+Y + G +E A
Sbjct: 241 QVHLWIDD-HGFGSNLKIVNALIDLYSKCGEVETA 274


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 155/455 (34%), Positives = 268/455 (58%), Gaps = 6/455 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  TF   L ACS     ++  +IH  +I+ G++ D  ++ +LL  Y     +  A  +F
Sbjct: 406 NRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVF 465

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
             +   +VV+W  +I+   +   +  A+  F  +    +KP+++T  S+L+ C S  + +
Sbjct: 466 ERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALE 525

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LGK + +  +R   E+++ + NA++  ++ CG L S   LF  MP+R++VSW T+I G+ 
Sbjct: 526 LGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFV 585

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G  + A   F+ M+++   +P++ T   +L+AC+S  AL+ G+ +H+ I T   L   
Sbjct: 586 QHGENQFAFDYFKMMQESG-VKPDQITFTGLLNACASPEALTEGRRLHALI-TEAALDCD 643

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
            +VG  +I+MY KCG +  A  VF+ L  K+  SW+++I+G A +G G++AL+LF  M  
Sbjct: 644 VVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQ 703

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             V PD +TF+  +SAC+H GL+ +GL  F++M   + I P+M+HY C+VD++GRAGLL 
Sbjct: 704 EGVKPDWITFVGALSACAHAGLIKEGLHHFESMKD-FNIEPRMEHYGCMVDLFGRAGLLH 762

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EA  FI +M ++ +  +WGALL AC++H + E+ +++ Q  +       G + ++SN +A
Sbjct: 763 EAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYA 822

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            A  W++  K+R  +   G+ KK G SWIEV+  +
Sbjct: 823 AAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRV 857



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 119/440 (27%), Positives = 215/440 (48%), Gaps = 10/440 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T++  L+ C           IH H+       DIF+ N L+  Y    +  SA QIF+ +
Sbjct: 106 TYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEM 165

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAI---DMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
              DV SW  ++ G  +   ++EA    +      VKP+  T V +L+AC+   +   G 
Sbjct: 166 PDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGG 225

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            + +  L    + ++ +  A+++ +I+CG +     +F  +P+R++++WT+MI G A   
Sbjct: 226 ELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHR 285

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
             K+A ++FQ ME+ +  +P++   V++L AC+   AL  GK VH+ +     L     V
Sbjct: 286 QFKQACNLFQVMEE-EGVQPDKVAFVSLLKACNHPEALEQGKRVHARMK-EVGLDTEIYV 343

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
           G A+++MY KCG +  A++VFN++  ++ +SW+ +I+G A +G   +A   F+ MI + +
Sbjct: 344 GTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGI 403

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            P+ VTF++++ ACS    + QG  +   +     I       A ++ MY + G L +A 
Sbjct: 404 EPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTA-LLSMYAKCGSLMDAR 462

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV--GTFALMSNTFAG 426
                +  +     W A++ A   H   +      Q L+ K+G+     TF  + N    
Sbjct: 463 NVFERIS-KQNVVAWNAMITAYVQHEKYDNAVATFQALL-KEGIKPDSSTFTSILNVCKS 520

Query: 427 ADRWEDTNKIRDEIRRMGLK 446
            D  E    ++  I R G +
Sbjct: 521 PDALELGKWVQSLIIRAGFE 540



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 112/414 (27%), Positives = 206/414 (49%), Gaps = 20/414 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YTF   L AC+ A    K  E+ + ++  G   D+F+  +L++ ++    +  A ++F
Sbjct: 204 DKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVF 263

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           N++   D+++WT++I+GL++    K+A ++F  ++   V+P+    VS+L AC+   + +
Sbjct: 264 NNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALE 323

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK +HA       +  I +  A+L  Y +CGS+     +F  +  RNVVSWT MI G+A
Sbjct: 324 QGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFA 383

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G  +EA   F +M ++   EPN  T +++L ACS  SAL  G+ +H  I  +      
Sbjct: 384 QHGRMEEAFLFFNKMIESG-IEPNRVTFMSILGACSRPSALKQGRQIHDRI-IKAGYITD 441

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
           + V  A+++MY KCG +  A  VF  ++ ++ ++W+ +I+    +     A+  F  ++ 
Sbjct: 442 DRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLK 501

Query: 306 NAVFPDDVTFIALISACSHGGLVD-----QGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
             + PD  TF ++++ C     ++     Q LI+     +   I         +V M+  
Sbjct: 502 EGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHI------RNALVSMFVN 555

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDRIRQDLVNKKGVS 413
            G L  A     +MP E +   W  ++     H  N   FD  +  ++ + GV 
Sbjct: 556 CGDLMSAMNLFNDMP-ERDLVSWNTIIAGFVQHGENQFAFDYFK--MMQESGVK 606



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 159/289 (55%), Gaps = 8/289 (2%)

Query: 83  ISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLN 139
           ++ LSK G   EA+ +   +D   ++ +  T  S+L  C    +   G+ IH H   +  
Sbjct: 76  LNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKI 135

Query: 140 ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQE 199
           + +I + N ++  Y +CG+  S   +F +MP ++V SW  ++GGY +    +EA  + ++
Sbjct: 136 QPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQ 195

Query: 200 MEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSVSNLVGNAVINMYVK 258
           M +    +P++ T V +L+AC+    +  G  + S I +  +D  +   VG A+INM++K
Sbjct: 196 MVQDG-VKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDL--FVGTALINMHIK 252

Query: 259 CGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIAL 318
           CG V  A++VFN L  +D I+W+++I+GLA +   +QA  LF +M    V PD V F++L
Sbjct: 253 CGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSL 312

Query: 319 ISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           + AC+H   ++QG  +   M  V  +  ++     ++ MY + G +E+A
Sbjct: 313 LKACNHPEALEQGKRVHARMKEV-GLDTEIYVGTALLSMYTKCGSMEDA 360


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 148/415 (35%), Positives = 249/415 (60%), Gaps = 4/415 (0%)

Query: 49  NSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VK 105
           N+LL  Y    D+ SA  +F  +    VVS+T++I+G ++ G   EA+ +F  ++   + 
Sbjct: 335 NTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGIS 394

Query: 106 PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYL 165
           P+  T+ +VL+ C+       GK +H     N    +I + NA++D Y +CGS+     +
Sbjct: 395 PDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELV 454

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
           F +M  ++++SW T+IGGY++  +  EA+S+F  +   K   P+E T+  VL AC+S+SA
Sbjct: 455 FSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSA 514

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285
              G+ +H YI  R        V N++++MY KCG + +A  +F+ +  KD +SW+ +I+
Sbjct: 515 FDKGREIHGYI-MRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIA 573

Query: 286 GLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 345
           G  M+G G++A+ LF+ M    + PD+++F++L+ ACSH GLVD+G   F  M    +I 
Sbjct: 574 GYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIE 633

Query: 346 PQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQD 405
           P ++HYAC+VDM  R G L +A  FI  MPI  + ++WGALL  CRIH + ++ +R+ + 
Sbjct: 634 PTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAEK 693

Query: 406 LVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +   +  + G + LM+N +A A++WE+  ++R  I + GL+K  GCSWIE+   +
Sbjct: 694 VFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRV 748



 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 122/372 (32%), Positives = 195/372 (52%), Gaps = 15/372 (4%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+S     + YTF+   K+ S         ++H ++++ G      + NSL+ FY+    
Sbjct: 186 MMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHR 245

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAID-----MFCGIDVKPNANTLVSVL 115
           + SA ++F+ +   DV+SW +II+G    G  ++ +      +F GI++  +  T+VSV 
Sbjct: 246 VDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEI--DLATIVSVF 303

Query: 116 SACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVV 175
           + C+      LG+A+H   ++          N +LD Y +CG L S   +F +M  R+VV
Sbjct: 304 AGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVV 363

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           S+T+MI GYA  G   EAV +F+EME+ +   P+  T+  VL+ C+    L  GK VH +
Sbjct: 364 SYTSMIAGYAREGLAGEAVKLFEEMEE-EGISPDVYTVTAVLNCCARNRLLDEGKRVHEW 422

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
           I    D+     V NA+++MY KCG +  A  VF+ +  KD ISW+TVI G + N    +
Sbjct: 423 IKEN-DMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANE 481

Query: 296 ALQLFSLMIINAVF-PDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQMQHYA- 352
           AL LF+L+++   F PD+ T   ++ AC+     D+G  I    M   Y      +H A 
Sbjct: 482 ALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGY---FSDRHVAN 538

Query: 353 CVVDMYGRAGLL 364
            +VDMY + G L
Sbjct: 539 SLVDMYAKCGAL 550



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 146/283 (51%), Gaps = 10/283 (3%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           YT T  L  C+      +   +H  + E     DIF+ N+L+  Y     +  A  +F+ 
Sbjct: 398 YTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSE 457

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK----PNANTLVSVLSACSSLVSHKL 126
           +   D++SW T+I G SK  +  EA+ +F  + V+    P+  T+  VL AC+SL +   
Sbjct: 458 MRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDK 517

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           G+ IH + +RN   ++  + N+++D Y +CG+L     LF  +  +++VSWT MI GY  
Sbjct: 518 GREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGM 577

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
            GF KEA+++F +M +    EP+E + V++L ACS    +  G    + +  R++  +  
Sbjct: 578 HGFGKEAIALFNQMRQAG-IEPDEISFVSLLYACSHSGLVDEGWRFFNIM--RHECKIEP 634

Query: 247 LVGN--AVINMYVKCGDVGIAIQ-VFNMLAYKDKISWSTVISG 286
            V +   +++M  + G++  A + + NM    D   W  ++ G
Sbjct: 635 TVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCG 677



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 129/276 (46%), Gaps = 13/276 (4%)

Query: 103 DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILD----FYIRCGS 158
           D+ P   TL SVL  C+   S K GK +       +  N  +LD+ +       Y  CG 
Sbjct: 91  DIDPR--TLCSVLQLCADSKSLKDGKEVDNF----IRGNGFVLDSNLGSKLALMYTNCGD 144

Query: 159 LASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLS 218
           L     +F ++     + W  ++   A+ G    ++ +F++M  +   E +  T   V  
Sbjct: 145 LKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKM-MSSGVEMDSYTFSCVSK 203

Query: 219 ACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI 278
           + SS+ +++ G+ +H YI  +      N VGN+++  Y+K   V  A +VF+ +  +D I
Sbjct: 204 SFSSLRSVNGGEQLHGYI-LKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVI 262

Query: 279 SWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM 338
           SW+++I+G   NG   + L +F  M+ + +  D  T +++ + C+   L+  G  +    
Sbjct: 263 SWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAV-HCF 321

Query: 339 STVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
                   + +    ++DMY + G L+ A+   REM
Sbjct: 322 GVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREM 357


>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
          Length = 1031

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 155/481 (32%), Positives = 271/481 (56%), Gaps = 36/481 (7%)

Query: 9    NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
            ++ TF   LKAC+  +   +  ++H H+ + G L DIF+ NSL+H Y    ++  A  +F
Sbjct: 551  DNLTFPFILKACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVF 610

Query: 69   NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
            + +V  DVVSW ++I G S+C   K+ + +F  +    VK +  T++ V+SAC+ L  + 
Sbjct: 611  DEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYS 670

Query: 126  LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKM---------------- 169
            +   +  +      E ++ L N ++D++ R G L S   +F  M                
Sbjct: 671  MADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYA 730

Query: 170  ---------------PKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
                           PK++++SW++MI GY++     +A+ +F++M++ K  +P+   + 
Sbjct: 731  KGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAK-VKPDAIVIA 789

Query: 215  NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
            +V+S+C+ + AL  GK+VH Y+  R ++    ++ N++I+MY+KCG    A+QVF  +  
Sbjct: 790  SVVSSCAHLGALDLGKWVHEYVR-RNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKE 848

Query: 275  KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
            KD +SW+++I GLA NG  +++L LF  M+     P+ VTF+ ++ AC++  LV++GL  
Sbjct: 849  KDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDH 908

Query: 335  FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
            F++M  +Y + PQM+HY CVVD+ GRAG LE+A  FI EMPI+ +  VW  LL +C  H 
Sbjct: 909  FESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHG 968

Query: 395  NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
            +  + + + + L   +  + G + L+SN +A A RW +   +R  +    ++K  GCS +
Sbjct: 969  DVAIAEIVTKKLNELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDVRKSPGCSAV 1028

Query: 455  E 455
            E
Sbjct: 1029 E 1029



 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 126/408 (30%), Positives = 208/408 (50%), Gaps = 40/408 (9%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF--CGIDVKPNANTLVSVLSACSSL 121
           AHQ+F+    P    W  ++   S     ++A+ +F         +       L AC+ L
Sbjct: 47  AHQVFDRRPTP----WHALLKAYSHGPHPQDALQLFRHARWHAADDTYAFTFALKACAGL 102

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLAS-------------------- 161
              +    +H   +R   E    +  A+++ YI CG LA                     
Sbjct: 103 GWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVVI 162

Query: 162 CGY-----------LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNE 210
            G+           LF +MP RNVVSW+ MI GY       EAV++F+ M   +   P+E
Sbjct: 163 TGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRM-MAEGISPSE 221

Query: 211 ATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN 270
            T++ V+ A S++  +  G+ +H Y   +  L     VGN++I++Y K G +  +++VF+
Sbjct: 222 ITVLAVVPALSNVGKILIGEALHGYCE-KEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFD 280

Query: 271 -MLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVD 329
            ML  ++ +SW+++ISG AM+G   +A++LF+ M    + P+ +TF++++ ACSHGGLV+
Sbjct: 281 EMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVE 340

Query: 330 QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           QG+  FK+M   Y I P ++H+ C++DM GRAG L EAE  IR+ P+E   +VW  LL  
Sbjct: 341 QGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGC 400

Query: 390 CRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIR 437
           C  +   EM +R  + ++  +    G F ++SN      R+ D   +R
Sbjct: 401 CSKYGEVEMGERTMKKILALEREFGGDFVVLSNMLTELRRFSDAEIVR 448



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 191/397 (48%), Gaps = 49/397 (12%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVK-DIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
            +HA+ I  G  +  +  + +L  Y  ++ D+  AH++F+ +  P    W  +I GL++ 
Sbjct: 471 RLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIRGLAQS 530

Query: 90  GFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
               +AI  +    G  + P+  T   +L AC+ + +   G+ +H H  +    ++I + 
Sbjct: 531 DAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLSDIFVS 590

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           N+++  Y  CG+L     +F +M  ++VVSW ++I GY++    K+ +++F+ M+  +  
Sbjct: 591 NSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQ-NEGV 649

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTR--------------------------- 239
           + ++ T++ V+SAC+ +   S   Y+  YI                              
Sbjct: 650 KADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEK 709

Query: 240 --YDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
             +++ V N+V  NA+I  Y K  D+  A ++F+ +  KD ISWS++ISG +       A
Sbjct: 710 VFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDA 769

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA---- 352
           L++F  M    V PD +   +++S+C+H G +D G         V+E V +    A    
Sbjct: 770 LEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLG-------KWVHEYVRRNNIKADTIM 822

Query: 353 --CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
              ++DMY + G  +EA    +EM  E +   W +++
Sbjct: 823 ENSLIDMYMKCGSAKEALQVFKEMK-EKDTLSWNSII 858



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 142/310 (45%), Gaps = 37/310 (11%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           Y FT ALKAC+     +  +++H  V+  G     ++  +L++ Y+    +  +   F  
Sbjct: 90  YAFTFALKACAGLGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEE 149

Query: 71  VVFPDVVSWTTIISGLSKCG--------FHK-----------------------EAIDMF 99
           +   + VSW  +I+G +  G        F +                       EA+ +F
Sbjct: 150 MPVKNAVSWNVVITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALF 209

Query: 100 CGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRC 156
             +    + P+  T+++V+ A S++    +G+A+H +  +     ++ + N+++D Y + 
Sbjct: 210 RRMMAEGISPSEITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKI 269

Query: 157 GSLASCGYLFVKM-PKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVN 215
           GS+ +   +F +M  +RN+VSWT++I G+A  G   +AV +F +M +     PN  T ++
Sbjct: 270 GSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAG-IRPNRITFLS 328

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           VL ACS    +  G      +   Y+++        +I+M  + G +  A Q+      +
Sbjct: 329 VLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVE 388

Query: 276 -DKISWSTVI 284
            +   W T++
Sbjct: 389 VNATVWRTLL 398


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 163/456 (35%), Positives = 262/456 (57%), Gaps = 6/456 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L AC+     +    IH   ++     D+    +L+  Y       +A   F
Sbjct: 429 NRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTF 488

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           N +   D+V+W ++I+G ++ G    AIDMF  +    + P+A T+V V+ AC+ L    
Sbjct: 489 NRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLD 548

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIGGY 184
            G  IH   ++   E++  + NA++D Y +CGSL S  +LF K    ++ V+W  +I  Y
Sbjct: 549 QGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAY 608

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
            + G  KEA+S F +M + +   PN  T V+VL A + ++A   G   H+ I     LS 
Sbjct: 609 MQNGHAKEAISSFHQM-RLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLS- 666

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           + LVGN++I+MY KCG +  + ++FN + +KD +SW+ ++SG A++G G +A+ LFSLM 
Sbjct: 667 NTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQ 726

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
            + V  D V+F++++SAC H GLV++G  +F +MS  Y I P ++HYAC+VD+ GRAGL 
Sbjct: 727 ESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLF 786

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           +E   FI+ MP+E +  VWGALL +CR+H N ++ +     LV  +  +   F ++S+ +
Sbjct: 787 DETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIY 846

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           A + RW D  K R ++  +GLKK  GCSW+E+   +
Sbjct: 847 AQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKV 882



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 110/395 (27%), Positives = 201/395 (50%), Gaps = 12/395 (3%)

Query: 27  QKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGL 86
           +K  EIH   ++     DI +   L+  Y    +   A Q+F  +   D+V+W+ II+ L
Sbjct: 346 EKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAAL 405

Query: 87  SKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNI 143
            + G+ +EA+ +F  +    +KPN  TL+S+L AC+ L   KLGK+IH  +++   ++++
Sbjct: 406 VQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDL 465

Query: 144 ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
               A++  Y +CG   +    F +M  R++V+W ++I GYA+ G    A+ +F ++ + 
Sbjct: 466 STGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKL-RL 524

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
               P+  T+V V+ AC+ ++ L  G  +H  I  +        V NA+I+MY KCG + 
Sbjct: 525 SAINPDAGTMVGVVPACALLNDLDQGTCIHGLI-VKLGFESDCHVKNALIDMYAKCGSLP 583

Query: 264 IAIQVFNMLAY-KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
            A  +FN   + KD+++W+ +I+    NG  ++A+  F  M +    P+ VTF++++ A 
Sbjct: 584 SAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAA 643

Query: 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
           ++     +G+  F A       +        ++DMY + G L  +E    EM  +   S 
Sbjct: 644 AYLAAFREGMA-FHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVS- 701

Query: 383 WGALLNACRIH----RNDEMFDRIRQDLVNKKGVS 413
           W A+L+   +H    R   +F  +++  V    VS
Sbjct: 702 WNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVS 736



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 187/347 (53%), Gaps = 8/347 (2%)

Query: 47  IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---D 103
           + N L+  Y    D+  A ++F+ +V  D VSW T+++G +  G   E +++F  +   +
Sbjct: 265 VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGN 324

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCG 163
           V+ N  + VS   A +  +  + GK IH  +L+   +++I++   ++  Y +CG      
Sbjct: 325 VRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAK 384

Query: 164 YLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI 223
            LF  +  R++V+W+ +I    + G+ +EA+S+FQEM+  K  +PN  TL+++L AC+ +
Sbjct: 385 QLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQK-MKPNRVTLMSILPACADL 443

Query: 224 SALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTV 283
           S L  GK +H + + + D+      G A+++MY KCG    A+  FN ++ +D ++W+++
Sbjct: 444 SLLKLGKSIHCF-TVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSL 502

Query: 284 ISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV-Y 342
           I+G A  G    A+ +F  + ++A+ PD  T + ++ AC+    +DQG  +   +  + +
Sbjct: 503 INGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGF 562

Query: 343 EIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           E    +++   ++DMY + G L  AE    +     +   W  ++ A
Sbjct: 563 ESDCHVKN--ALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 172/333 (51%), Gaps = 11/333 (3%)

Query: 2   LSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDI 61
           LS  +  N+  + + L +C   +P    L+IHA +I  G  H   I + L++ Y      
Sbjct: 24  LSSSTYTNYLHYPRLLSSCKHLNP---LLQIHAQIIVSGFKHHHSITH-LINLYSLFHKC 79

Query: 62  FSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-CGID--VKPNANTLVSVLSAC 118
             A  +F+S   P  + W ++I   ++   + EA++M+ C ++  ++P+  T   VL AC
Sbjct: 80  DLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKAC 139

Query: 119 SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWT 178
           +  ++ + G   H    R   E ++ +   ++D Y + G L     +F KMPKR+VV+W 
Sbjct: 140 TGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWN 199

Query: 179 TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST 238
            MI G ++     EAV  F+ M+     EP+  +L+N+      +S +   + +H Y+  
Sbjct: 200 AMIAGLSQSEDPCEAVDFFRSMQLVG-VEPSSVSLLNLFPGICKLSNIELCRSIHGYVFR 258

Query: 239 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQ 298
           R     S+ V N +I++Y KCGDV +A +VF+ +  +D +SW T+++G A NGC  + L+
Sbjct: 259 R---DFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLE 315

Query: 299 LFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
           LF  M +  V  + V+ ++   A +    +++G
Sbjct: 316 LFDKMKLGNVRINKVSAVSAFLAAAETIDLEKG 348



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 2/136 (1%)

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD 311
           +IN+Y       +A  VF+      +I W+++I     +    +AL+++  M+   + PD
Sbjct: 69  LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPD 128

Query: 312 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFI 371
             TF  ++ AC+ G L  Q  + F        +   +   A +VDMY + G L+ A    
Sbjct: 129 KYTFTFVLKACT-GALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVF 187

Query: 372 REMPIEAEWSVWGALL 387
            +MP + +   W A++
Sbjct: 188 DKMP-KRDVVAWNAMI 202


>gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic; Flags: Precursor
 gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 544

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 173/483 (35%), Positives = 272/483 (56%), Gaps = 43/483 (8%)

Query: 12  TFTQALKAC-SLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           T    L++C ++AH       IHA +I   H  D F+   L+    T+  +  A+ +F+ 
Sbjct: 31  TLISVLRSCKNIAH----VPSIHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSY 86

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLG 127
           V  P+V  +T +I G    G   + + ++  +    V P+   + SVL AC      K+ 
Sbjct: 87  VSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKACDL----KVC 142

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           + IHA  L+    ++  +   +++ Y + G L +   +F +MP R+ V+ T MI  Y+E 
Sbjct: 143 REIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSEC 202

Query: 188 GFCKEAVSVFQ---------------------EMEKTKE---------AEPNEATLVNVL 217
           GF KEA+ +FQ                     EM K  E            NE T V VL
Sbjct: 203 GFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVL 262

Query: 218 SACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK 277
           SACS + AL  G++VHS++  +  + +SN VGNA+INMY +CGD+  A +VF ++  KD 
Sbjct: 263 SACSDLGALELGRWVHSFVENQR-MELSNFVGNALINMYSRCGDINEARRVFRVMRDKDV 321

Query: 278 ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKA 337
           IS++T+ISGLAM+G   +A+  F  M+     P+ VT +AL++ACSHGGL+D GL +F +
Sbjct: 322 ISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNS 381

Query: 338 MSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
           M  V+ + PQ++HY C+VD+ GR G LEEA  FI  +PIE +  + G LL+AC+IH N E
Sbjct: 382 MKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNME 441

Query: 398 MFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           + ++I + L   +    GT+ L+SN +A + +W+++ +IR+ +R  G++K+ GCS IEV+
Sbjct: 442 LGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVD 501

Query: 458 PSI 460
             I
Sbjct: 502 NQI 504



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 160/345 (46%), Gaps = 41/345 (11%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           ++Y  T  LKAC L    +   EIHA V++ G      +   ++  Y    ++ +A ++F
Sbjct: 126 DNYVITSVLKACDL----KVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMF 181

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK----------------------- 105
           + +   D V+ T +I+  S+CGF KEA+++F  + +K                       
Sbjct: 182 DEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALE 241

Query: 106 -----------PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
                       N  T V VLSACS L + +LG+ +H+       E +  + NA+++ Y 
Sbjct: 242 LFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYS 301

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           RCG +     +F  M  ++V+S+ TMI G A  G   EA++ F++M   +   PN+ TLV
Sbjct: 302 RCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDM-VNRGFRPNQVTLV 360

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLA 273
            +L+ACS    L  G  V + +   +++         ++++  + G +  A + + N+  
Sbjct: 361 ALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPI 420

Query: 274 YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIAL 318
             D I   T++S   ++G   +  +  +  +  +  PD  T++ L
Sbjct: 421 EPDHIMLGTLLSACKIHG-NMELGEKIAKRLFESENPDSGTYVLL 464


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 156/458 (34%), Positives = 269/458 (58%), Gaps = 9/458 (1%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHD-IFIQNSLLHFYVTVKDIFSAH 65
            YN Y+  + LK C+     ++   +HAH+++   L + + +QN +++ Y     +  A 
Sbjct: 86  DYNLYS--KLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDAR 143

Query: 66  QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLV 122
           ++F+ +   D+V+WT +I+G S+    ++A+ +F     +  +PN  TL S+L A  S  
Sbjct: 144 RMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEH 203

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
               G  +HA  L+   ++++ + +A++D Y RCG + +    F  MP ++ VSW  +I 
Sbjct: 204 GLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALIS 263

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
           G+A +G  + A+ +  +M++ K  +P   T  +VLSAC+SI AL  GK+VH+++  +  L
Sbjct: 264 GHARKGEGEHALHLLWKMQR-KNFQPTHFTYSSVLSACASIGALEQGKWVHAHM-IKSGL 321

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
            +   +GN +++MY K G +  A +VF+ L   D +SW+T+++G A +G G++ L  F  
Sbjct: 322 KLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQ 381

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
           M+   + P++++F+ +++ACSH GL+D+GL  F+ M   Y++ P + HY   VD+ GR G
Sbjct: 382 MLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKK-YKVEPDVPHYVTFVDLLGRVG 440

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSN 422
           LL+ AE FIREMPIE   +VWGALL ACR+H+N E+     +          G   L+SN
Sbjct: 441 LLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSN 500

Query: 423 TFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            +A A RW D  K+R  ++  G+KK+  CSW+E+  ++
Sbjct: 501 IYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAV 538



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 166/313 (53%), Gaps = 8/313 (2%)

Query: 95  AIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSL-RNLNENNIILDNAILDFY 153
           A+D+     + P+ N    +L  C+ L   + G+ +HAH +  +  +N+++L N I++ Y
Sbjct: 74  ALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMY 133

Query: 154 IRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATL 213
            +CG L     +F +MP +++V+WT +I G+++    ++A+ +F +M +    +PN  TL
Sbjct: 134 AKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLG-FQPNHFTL 192

Query: 214 VNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 273
            ++L A  S   L  G  +H++   +Y    S  VG+A+++MY +CG +  A   F+ + 
Sbjct: 193 SSLLKASGSEHGLDPGTQLHAFC-LKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMP 251

Query: 274 YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI 333
            K ++SW+ +ISG A  G G  AL L   M      P   T+ +++SAC+  G ++QG  
Sbjct: 252 TKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKW 311

Query: 334 LFKAM-STVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI 392
           +   M  +  +++  + +   ++DMY +AG +++A+     + ++ +   W  +L  C  
Sbjct: 312 VHAHMIKSGLKLIAFIGN--TLLDMYAKAGSIDDAKRVFDRL-VKPDVVSWNTMLTGCAQ 368

Query: 393 HR-NDEMFDRIRQ 404
           H    E  DR  Q
Sbjct: 369 HGLGKETLDRFEQ 381



 Score = 38.9 bits (89), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
           G   L    L+   ++ PD   +  L+  C+  G V+QG I+   +   + +   +    
Sbjct: 68  GGTGLYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQN 127

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
            +V+MY + G L++A     EMP + +   W AL+
Sbjct: 128 IIVNMYAKCGCLDDARRMFDEMPTK-DMVTWTALI 161


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 164/455 (36%), Positives = 268/455 (58%), Gaps = 5/455 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T+   LKAC+     +   E+HA +   G   D+ +  +LL  Y     I  A +IF
Sbjct: 128 NAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIF 187

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           ++++  D++SWT +I   ++ G  KEA  +   ++    KPNA T VS+L+AC+S  + K
Sbjct: 188 DNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALK 247

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
             K +H H+L    E ++ +  A++  Y + GS+     +F +M  R+VVSW  MIG +A
Sbjct: 248 WVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFA 307

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           E G   EA  +F +M+ T+  +P+    +++L+AC+S  AL + K +H + +    L V 
Sbjct: 308 EHGRGHEAYDLFLQMQ-TEGCKPDAIMFLSILNACASAGALEWVKKIHRH-ALDSGLEVD 365

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             VG A+++MY K G +  A  VF+ +  ++ +SW+ +ISGLA +G G+ AL++F  M  
Sbjct: 366 VRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTA 425

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
           + V PD VTF+A++SACSH GLVD+G   + AM+ VY I P + H  C+VD+ GRAG L 
Sbjct: 426 HGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLM 485

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EA+ FI  M ++ + + WGALL +CR + N E+ + + ++ +     +  T+ L+SN +A
Sbjct: 486 EAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYA 545

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            A +W+  + +R  +R  G++K+ G SWIEV+  I
Sbjct: 546 EAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKI 580



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/389 (28%), Positives = 204/389 (52%), Gaps = 9/389 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + + + + LK C        A ++H  +I+     +  + N+LLH Y+    +  A  +F
Sbjct: 27  DSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVF 86

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHK 125
           +++V     SW  +I+G  +    ++A+ +F   C   V+PNA T + +L AC+SL + K
Sbjct: 87  DALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALK 146

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK +HA       E+++ +  A+L  Y +CGS+     +F  +   +++SWT MIG YA
Sbjct: 147 WGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYA 206

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G  KEA  +  +ME+ +  +PN  T V++L+AC+S  AL + K VH + +    L + 
Sbjct: 207 QSGNGKEAYRLMLQMEQ-EGFKPNAITYVSILNACASEGALKWVKRVHRH-ALDAGLELD 264

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             VG A++ MY K G +  A  VF+ +  +D +SW+ +I   A +G G +A  LF  M  
Sbjct: 265 VRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQT 324

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFK-AMSTVYEIVPQMQHYACVVDMYGRAGLL 364
               PD + F+++++AC+  G ++    + + A+ +  E+   ++    +V MY ++G +
Sbjct: 325 EGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEV--DVRVGTALVHMYSKSGSI 382

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIH 393
           ++A      M +    S W A+++    H
Sbjct: 383 DDARVVFDRMKVRNVVS-WNAMISGLAQH 410


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 163/463 (35%), Positives = 270/463 (58%), Gaps = 7/463 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+  P   +  T T  + AC L    +   +IH +V+      D  I NSL+  Y +V  
Sbjct: 299 MIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGL 358

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           I  A  +F+     D+VSWT +ISG   C   ++A++ +  ++   + P+  T+  VLSA
Sbjct: 359 IEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSA 418

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           CS L +  +G  +H  + +    +  I+ N+++D Y +C  +     +F    ++N+VSW
Sbjct: 419 CSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSW 478

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
           T++I G      C EA+  F+EM   +  +PN  TLV VLSAC+ I AL+ GK +H++ +
Sbjct: 479 TSIILGLRINNRCFEALFFFREM--IRRLKPNSVTLVCVLSACARIGALTCGKEIHAH-A 535

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            R  +S    + NA+++MYV+CG +  A + F  + + +  SW+ +++G A  G G  A 
Sbjct: 536 LRTGVSFDGFMPNAILDMYVRCGRMEYAWKQFFSVDH-EVTSWNILLTGYAERGKGAHAT 594

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
           +LF  M+ + V P++VTFI+++ ACS  G+V +GL  F +M   Y I+P ++HYACVVD+
Sbjct: 595 ELFQRMVESNVSPNEVTFISILCACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDL 654

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTF 417
            GR+G LEEA  FI++MP++ + +VWGALLN+CRIH + E+ +   +++      SVG +
Sbjct: 655 LGRSGKLEEAYEFIQKMPMKPDPAVWGALLNSCRIHHHVELGELAAENIFQDDTTSVGYY 714

Query: 418 ALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            L+SN +A   +W+   ++R  +R+ GL    GCSW+EV  ++
Sbjct: 715 ILLSNLYADNGKWDKVAEVRKMMRQNGLIVDPGCSWVEVKGTV 757



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/384 (30%), Positives = 200/384 (52%), Gaps = 13/384 (3%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           YTF   L+ C       +  EIH HVI YG   D+ + N+L+  YV   D+ +A  +F+ 
Sbjct: 208 YTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDK 267

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK----PNANTLVSVLSACSSLVSHKL 126
           +   D +SW  +ISG  + G   E + +F G+ +K    P+  T+ SV++AC  L   +L
Sbjct: 268 MPNRDRISWNAMISGYFENGVCLEGLRLF-GMMIKYPVDPDLMTMTSVITACELLGDDRL 326

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           G+ IH + LR     +  + N+++  Y   G +     +F +   R++VSWT MI GY  
Sbjct: 327 GRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYEN 386

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
               ++A+  ++ ME  +   P+E T+  VLSACS +  L  G  +H  ++ +  L   +
Sbjct: 387 CLMPQKALETYKMME-AEGIMPDEITIAIVLSACSCLCNLDMGMNLHE-VAKQKGLVSYS 444

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
           +V N++I+MY KC  +  A+++F+    K+ +SW+++I GL +N    +AL  F  M I 
Sbjct: 445 IVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREM-IR 503

Query: 307 AVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
            + P+ VT + ++SAC+  G +  G  I   A+ T       M +   ++DMY R G +E
Sbjct: 504 RLKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPN--AILDMYVRCGRME 561

Query: 366 EAEAFIREMPIEAEWSVWGALLNA 389
              A+ +   ++ E + W  LL  
Sbjct: 562 --YAWKQFFSVDHEVTSWNILLTG 583



 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 104/396 (26%), Positives = 195/396 (49%), Gaps = 19/396 (4%)

Query: 13  FTQALKACSLAHPHQKALEIHAHV-IEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           +   ++ C      ++   ++++V I   HL  + + N+LL  +V   ++  A  +F  +
Sbjct: 109 YVALIRLCEWKRARKEGSRVYSYVSISMSHL-SLQLGNALLSMFVRFGNLVDAWYVFGRM 167

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGK 128
              ++ SW  ++ G +K G   EA+D++     + VKP+  T   VL  C  + +   G+
Sbjct: 168 EKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGR 227

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IH H +R   E+++ + NA++  Y++CG + +   +F KMP R+ +SW  MI GY E G
Sbjct: 228 EIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENG 287

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
            C E + +F  M K    +P+  T+ +V++AC  +     G+ +H Y+  R +      +
Sbjct: 288 VCLEGLRLFGMMIKYP-VDPDLMTMTSVITACELLGDDRLGRQIHGYV-LRTEFGRDPSI 345

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            N++I MY   G +  A  VF+    +D +SW+ +ISG       ++AL+ + +M    +
Sbjct: 346 HNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGI 405

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMS----TVYEIVPQMQHYACVVDMYGRAGLL 364
            PD++T   ++SACS    +D G+ L +         Y IV        ++DMY +   +
Sbjct: 406 MPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVAN-----SLIDMYAKCKCI 460

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFD 400
           ++A        +E     W +++   RI  N+  F+
Sbjct: 461 DKALEIFHST-LEKNIVSWTSIILGLRI--NNRCFE 493


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 162/447 (36%), Positives = 266/447 (59%), Gaps = 13/447 (2%)

Query: 23  AHPHQKAL-EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTT 81
           A P  K L ++HAHVI  G+    F+   LL+       I    QIF  V  PD   +T+
Sbjct: 21  AGPRLKLLHQVHAHVIVSGYGCSRFLLTKLLNLACAAGSISYTRQIFLIVPNPDSFLFTS 80

Query: 82  IISGLSKCGFHKEAI------DMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSL 135
           +I   SK  FH  ++            +V P+  T  SV+ +C+ LV+ + G+ IH H L
Sbjct: 81  LIRSTSK--FHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVL 138

Query: 136 RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVS 195
            N   +++ +  A++ FY +CG L +   +F KM  R+VV+W +MI GY + GF KEA+ 
Sbjct: 139 VNGFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIR 198

Query: 196 VFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSNLVGNAVIN 254
           +F  M++    EPN AT V+VLSAC+ + A   G +VH Y +    DL+V  ++G ++IN
Sbjct: 199 LFDRMKEIG-VEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNV--VLGTSLIN 255

Query: 255 MYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVT 314
           MY +CG+V  A +VF+ +  ++ ++W+ +ISG   NG G QA++LF  M  N + P+ +T
Sbjct: 256 MYTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSIT 315

Query: 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
           F+A++SAC+H GLV++G  +F++M   Y +VP+++H+ C+VDM GRAGLL+EA  FI+E+
Sbjct: 316 FVAVLSACAHAGLVNEGRRVFESMREEYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEI 375

Query: 375 PIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTN 434
             E   ++W A+L AC++H+N  +  ++ +  +  +  +   + ++SN +A A R +   
Sbjct: 376 HEEPAPAIWTAMLGACKMHKNFGLGAQVAEHRLASEPGNPAHYVILSNIYALAGRMDQVE 435

Query: 435 KIRDEIRRMGLKKKTGCSWIEVNPSIF 461
            +RD + R  LKK+ G S I+++   +
Sbjct: 436 MVRDNMIRKCLKKQVGYSTIDLDRKTY 462



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/237 (35%), Positives = 138/237 (58%), Gaps = 4/237 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           ++YTFT  +K+C+     +    IH HV+  G   D+++Q +L+ FY     + +A ++F
Sbjct: 110 SNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKVF 169

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHK 125
           + +    VV+W ++ISG  + GF KEAI +F     I V+PN+ T VSVLSAC+ L +  
Sbjct: 170 DKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFI 229

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG  +H +++ N  + N++L  ++++ Y RCG+++    +F  M +RNVV+WT MI GY 
Sbjct: 230 LGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYG 289

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
             G+  +AV +F EM +     PN  T V VLSAC+    ++ G+ V   +   Y L
Sbjct: 290 TNGYGSQAVELFHEMRRNG-LLPNSITFVAVLSACAHAGLVNEGRRVFESMREEYRL 345


>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 166/445 (37%), Positives = 252/445 (56%), Gaps = 41/445 (9%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           ++YT+    KAC+     +   EI  HV+  G   DIF+ N+++H  V+  D+  A ++F
Sbjct: 150 DNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMF 209

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
           +     D+VSW ++I+G   CG  + A  +F  +  K    T+VS  +            
Sbjct: 210 DKSCVRDLVSWNSMINGY--CGNLESARKLFDSMTNK----TMVSWTTMVVG-------- 255

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
                                   Y + G L     LF +MP ++VV W  MIGGY    
Sbjct: 256 ------------------------YAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHAN 291

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
             KEA+++F EM+      P+E T+V+ LSACS + AL  G ++H YI  +++LS++  +
Sbjct: 292 RGKEALALFNEMQAMN-INPDEVTMVSCLSACSQLGALDVGIWIHHYIE-KHELSLNVAL 349

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
           G A+I+MY KCG +  AIQVF  L  ++ ++W+ +ISGLA++G    A+  FS MI N+V
Sbjct: 350 GTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSV 409

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD+VTF+ L+SAC HGGLV++G   F  MS+ + + P+++HY+C+VD+ GRAGLLEEAE
Sbjct: 410 MPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAE 469

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
             I+ MPIEA+  VWGAL  ACRIH N  M +R    L+       G + L++N +  A+
Sbjct: 470 ELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAE 529

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSW 453
            W++  K R  +R+ G+ +KT  SW
Sbjct: 530 MWKEAGKARKLMRQRGV-EKTPDSW 553



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/298 (21%), Positives = 119/298 (39%), Gaps = 65/298 (21%)

Query: 159 LASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLS 218
           L  C  +       N  SW   I G+ +    +EAV +++ + +    +P+  T   +  
Sbjct: 100 LDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFK 159

Query: 219 ACSSISALSFGKYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVG-------------- 263
           AC+ +S +  G  +  ++    +D  +   V NAVI++ V CGD+               
Sbjct: 160 ACARLSLIRMGSEILGHVLHLGFDSDI--FVSNAVIHLLVSCGDLDGARKMFDKSCVRDL 217

Query: 264 ---------------IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
                           A ++F+ +  K  +SW+T++ G A +G    A +LF  M    V
Sbjct: 218 VSWNSMINGYCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDV 277

Query: 309 FP-------------------------------DDVTFIALISACSHGGLVDQGLILFKA 337
            P                               D+VT ++ +SACS  G +D G+ +   
Sbjct: 278 VPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHY 337

Query: 338 MSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN 395
           +   +E+   +     ++DMY + G + +A    +E+P     + W A+++   +H N
Sbjct: 338 IEK-HELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLT-WTAIISGLALHGN 393


>gi|449448940|ref|XP_004142223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 152/433 (35%), Positives = 251/433 (57%), Gaps = 6/433 (1%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           +HAH ++ G   D ++ N+LL  YV    I +A  +F  +   DV+SW T+IS  ++  F
Sbjct: 386 LHAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMF 445

Query: 92  HKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148
             +A ++F   C  ++K N+ T+VS+L+ C        G++IH  +++N  E N  L+ +
Sbjct: 446 RAKAFELFLMMCESEIKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKNGLEINTSLNTS 505

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
           + + YI CG   +   +F + P+R++VSW ++I  Y +     +A+ +F  M    E EP
Sbjct: 506 LTEMYINCGDERAATNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLLFNHM--ISELEP 563

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
           N  T++N+L++C+ ++ L  G+ +H+Y + R   L +   + NA I MY +CG +  A +
Sbjct: 564 NSVTIINILTSCTQLAHLPLGQCLHAYTTRREVSLEMDASLANAFITMYARCGKLQYAEK 623

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           +F  L  +  +SW+ +I+G  M+G GR A   F+ M+ +   P++V+F +++SACSH GL
Sbjct: 624 IFCTLQTRSIVSWNAMITGYGMHGRGRDATLAFAQMLDDGFKPNNVSFASVLSACSHSGL 683

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
              GL LF +M   + I PQ+ HY C+VD+ GR G   EA AFI  MPIE + S+W ALL
Sbjct: 684 TVTGLQLFHSMVRDFGIAPQLTHYGCMVDLLGRGGHFSEAIAFINSMPIEPDASIWRALL 743

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
           ++C+I  N+++ + I   LV  +  + G F L+SN +A A  W +  +IR  +R  GL K
Sbjct: 744 SSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEVVQIRKWLRERGLGK 803

Query: 448 KTGCSWIEVNPSI 460
             G SWI +   +
Sbjct: 804 PPGTSWIVIGNQV 816



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/392 (28%), Positives = 205/392 (52%), Gaps = 11/392 (2%)

Query: 8   YNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           ++  T    ++AC+     +  +++H   I++  ++D+FI N+LL+ Y     + S+  +
Sbjct: 260 FDAVTMLVVIQACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWAL 319

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSH 124
           FN+V   D   W ++IS     GFH EAI +F  +    +K +  T+  +LS C+ L   
Sbjct: 320 FNAVPTSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDG 379

Query: 125 KL-GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            + G+ +HAH++++  E +  L NA+L  Y++   + +  Y+F KM   +V+SW TMI  
Sbjct: 380 SIWGRGLHAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISA 439

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           +A+  F  +A  +F  M ++ E + N  T+V++L+ C   S L FG+ +H + + +  L 
Sbjct: 440 FAQSMFRAKAFELFLMMCES-EIKFNSYTIVSLLAFCKDGSDLVFGRSIHGF-AIKNGLE 497

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           ++  +  ++  MY+ CGD   A  +F     +D +SW+++IS    N    +AL LF+ M
Sbjct: 498 INTSLNTSLTEMYINCGDERAATNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLLFNHM 557

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA--CVVDMYGRA 361
            I+ + P+ VT I ++++C+    +  G  L  A +T  E+  +M        + MY R 
Sbjct: 558 -ISELEPNSVTIINILTSCTQLAHLPLGQCL-HAYTTRREVSLEMDASLANAFITMYARC 615

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           G L+ AE     +   +  S W A++    +H
Sbjct: 616 GKLQYAEKIFCTLQTRSIVS-WNAMITGYGMH 646



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 163/290 (56%), Gaps = 8/290 (2%)

Query: 102 IDVKPNANTLVSVLSACSSLVSHKLGKAIHAHS-LRNLNE-NNIILDNAILDFYIRCGSL 159
           + + P++ T+  VL AC  L  + +G  +  HS +R L+  N++ +  A++DFY +CG +
Sbjct: 54  LGITPDSATMPLVLKACGRL--NAIGNGVRIHSFIRGLDLINDVRVGTALVDFYCKCGLV 111

Query: 160 ASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
           A    +FV+MP+R++VSW  +I GY      KEAV +F EM+K     PN  T+V +L A
Sbjct: 112 AEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAG-LTPNSRTVVALLLA 170

Query: 220 CSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS 279
           C  +  L  G+ +H Y        +   VG A++  Y++  D  ++ +VF+++  ++ +S
Sbjct: 171 CGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRF-DAVLSHRVFSLMLVRNIVS 229

Query: 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMS 339
           W+ +I+G    G   +AL+L+S M+I  +  D VT + +I AC+  G +  G+ L + ++
Sbjct: 230 WNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQ-LA 288

Query: 340 TVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
             + ++  +     +++MY   G LE + A    +P  ++ ++W +++++
Sbjct: 289 IKFNLINDLFILNALLNMYSDNGSLESSWALFNAVP-TSDAALWNSMISS 337



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 163/316 (51%), Gaps = 7/316 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    LKAC   +     + IH+ +     ++D+ +  +L+ FY     +  A ++F  +
Sbjct: 62  TMPLVLKACGRLNAIGNGVRIHSFIRGLDLINDVRVGTALVDFYCKCGLVAEASKVFVEM 121

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
              D+VSW  +ISG   C  +KEA+ +F  +    + PN+ T+V++L AC  ++  +LG+
Sbjct: 122 PERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQ 181

Query: 129 AIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
            IH + LRN L + +  +  A++ FY+R  ++ S   +F  M  RN+VSW  +I G+   
Sbjct: 182 EIHGYCLRNGLFDMDAYVGTALVGFYMRFDAVLS-HRVFSLMLVRNIVSWNAIITGFLNV 240

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G C +A+ ++  M   +  + +  T++ V+ AC+    L  G  +H  ++ +++L     
Sbjct: 241 GDCAKALKLYSSM-LIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQ-LAIKFNLINDLF 298

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           + NA++NMY   G +  +  +FN +   D   W+++IS     G   +A+ LF  M +  
Sbjct: 299 ILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALFIKMRLER 358

Query: 308 VFPDDVTFIALISACS 323
           +  D  T   ++S C+
Sbjct: 359 IKEDVRTIAIMLSLCN 374



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 171/324 (52%), Gaps = 12/324 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLH-DIFIQNSLLHFYVTVKDIFSAHQI 67
           N  T    L AC      +   EIH + +  G    D ++  +L+ FY+    + S H++
Sbjct: 160 NSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFDAVLS-HRV 218

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSH 124
           F+ ++  ++VSW  II+G    G   +A+ ++  +    +K +A T++ V+ AC+     
Sbjct: 219 FSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCL 278

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           +LG  +H  +++    N++ + NA+L+ Y   GSL S   LF  +P  +   W +MI  Y
Sbjct: 279 RLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSY 338

Query: 185 AERGFCKEAVSVFQEM--EKTKEAEPNEATLVNVLSACSSISALS-FGKYVHSYISTRYD 241
              GF  EA+++F +M  E+ KE   +  T+  +LS C+ ++  S +G+ +H++ + +  
Sbjct: 339 IGFGFHAEAIALFIKMRLERIKE---DVRTIAIMLSLCNDLNDGSIWGRGLHAH-AMKSG 394

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
           + +   +GNA+++MYVK   +  A  VF  +   D ISW+T+IS  A +    +A +LF 
Sbjct: 395 IELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFL 454

Query: 302 LMIINAVFPDDVTFIALISACSHG 325
           +M  + +  +  T ++L++ C  G
Sbjct: 455 MMCESEIKFNSYTIVSLLAFCKDG 478


>gi|449502637|ref|XP_004161700.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 152/433 (35%), Positives = 251/433 (57%), Gaps = 6/433 (1%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           +HAH ++ G   D ++ N+LL  YV    I +A  +F  +   DV+SW T+IS  ++  F
Sbjct: 386 LHAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMF 445

Query: 92  HKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148
             +A ++F   C  ++K N+ T+VS+L+ C        G++IH  +++N  E N  L+ +
Sbjct: 446 RAKAFELFLMMCESEIKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKNGLEINTSLNTS 505

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
           + + YI CG   +   +F + P+R++VSW ++I  Y +     +A+ +F  M    E EP
Sbjct: 506 LTEMYINCGDERAATNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLLFNHM--ISELEP 563

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
           N  T++N+L++C+ ++ L  G+ +H+Y + R   L +   + NA I MY +CG +  A +
Sbjct: 564 NSVTIINILTSCTQLAHLPLGQCLHAYTTRREVSLEMDASLANAFITMYARCGKLQYAEK 623

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           +F  L  +  +SW+ +I+G  M+G GR A   F+ M+ +   P++V+F +++SACSH GL
Sbjct: 624 IFCTLQTRSIVSWNAMITGYGMHGRGRDATLAFAQMLDDGFKPNNVSFASVLSACSHSGL 683

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
              GL LF +M   + I PQ+ HY C+VD+ GR G   EA AFI  MPIE + S+W ALL
Sbjct: 684 TVTGLQLFHSMVRDFGIAPQLTHYGCMVDLLGRGGHFSEAIAFINSMPIEPDASIWRALL 743

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
           ++C+I  N+++ + I   LV  +  + G F L+SN +A A  W +  +IR  +R  GL K
Sbjct: 744 SSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEVVQIRKWLRERGLGK 803

Query: 448 KTGCSWIEVNPSI 460
             G SWI +   +
Sbjct: 804 PPGTSWIVIGNQV 816



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 111/392 (28%), Positives = 205/392 (52%), Gaps = 11/392 (2%)

Query: 8   YNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           ++  T    ++AC+     +  +++H   I++  ++D+FI N+LL+ Y     + S+  +
Sbjct: 260 FDAVTMLVVIQACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWAL 319

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSH 124
           FN+V   D   W ++IS     GFH EAI +F  +    +K +  T+  +LS C+ L   
Sbjct: 320 FNAVPTSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDG 379

Query: 125 KL-GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            + G+ +HAH++++  E +  L NA+L  Y++   + +  Y+F KM   +V+SW TMI  
Sbjct: 380 SIWGRGLHAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISA 439

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           +A+  F  +A  +F  M ++ E + N  T+V++L+ C   S L FG+ +H + + +  L 
Sbjct: 440 FAQSMFRAKAFELFLMMCES-EIKFNSYTIVSLLAFCKDGSDLVFGRSIHGF-AIKNGLE 497

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           ++  +  ++  MY+ CGD   A  +F     +D +SW+++IS    N    +AL LF+ M
Sbjct: 498 INTSLNTSLTEMYINCGDERAATNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLLFNHM 557

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA--CVVDMYGRA 361
            I+ + P+ VT I ++++C+    +  G  L  A +T  E+  +M        + MY R 
Sbjct: 558 -ISELEPNSVTIINILTSCTQLAHLPLGQCL-HAYTTRREVSLEMDASLANAFITMYARC 615

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           G L+ AE     +   +  S W A++    +H
Sbjct: 616 GKLQYAEKIFCTLQTRSIVS-WNAMITGYGMH 646



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 163/290 (56%), Gaps = 8/290 (2%)

Query: 102 IDVKPNANTLVSVLSACSSLVSHKLGKAIHAHS-LRNLNE-NNIILDNAILDFYIRCGSL 159
           + + P++ T+  VL AC  L  + +G  +  HS +R L+  N++ +  A++DFY +CG +
Sbjct: 54  LGITPDSATMPLVLKACGRL--NAIGNGVRIHSCIRGLDLINDVRVGTALVDFYCKCGLV 111

Query: 160 ASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
           A    +FV+MP+R++VSW  +I GY      KEAV +F EM+K     PN  T+V +L A
Sbjct: 112 AEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAG-LTPNSRTVVALLLA 170

Query: 220 CSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS 279
           C  +  L  G+ +H Y        +   VG A++  Y++  D  ++ +VF+++  ++ +S
Sbjct: 171 CGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRF-DAVLSHRVFSLMLVRNIVS 229

Query: 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMS 339
           W+ +I+G    G   +AL+L+S M+I  +  D VT + +I AC+  G +  G+ L + ++
Sbjct: 230 WNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQ-LA 288

Query: 340 TVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
             + ++  +     +++MY   G LE + A    +P  ++ ++W +++++
Sbjct: 289 IKFNLINDLFILNALLNMYSDNGSLESSWALFNAVP-TSDAALWNSMISS 337



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 163/316 (51%), Gaps = 7/316 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    LKAC   +     + IH+ +     ++D+ +  +L+ FY     +  A ++F  +
Sbjct: 62  TMPLVLKACGRLNAIGNGVRIHSCIRGLDLINDVRVGTALVDFYCKCGLVAEASKVFVEM 121

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
              D+VSW  +ISG   C  +KEA+ +F  +    + PN+ T+V++L AC  ++  +LG+
Sbjct: 122 PERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQ 181

Query: 129 AIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
            IH + LRN L + +  +  A++ FY+R  ++ S   +F  M  RN+VSW  +I G+   
Sbjct: 182 EIHGYCLRNGLFDMDAYVGTALVGFYMRFDAVLS-HRVFSLMLVRNIVSWNAIITGFLNV 240

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G C +A+ ++  M   +  + +  T++ V+ AC+    L  G  +H  ++ +++L     
Sbjct: 241 GDCAKALKLYSSM-LIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQ-LAIKFNLINDLF 298

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           + NA++NMY   G +  +  +FN +   D   W+++IS     G   +A+ LF  M +  
Sbjct: 299 ILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALFIKMRLER 358

Query: 308 VFPDDVTFIALISACS 323
           +  D  T   ++S C+
Sbjct: 359 IKEDVRTIAIMLSLCN 374



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 171/324 (52%), Gaps = 12/324 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLH-DIFIQNSLLHFYVTVKDIFSAHQI 67
           N  T    L AC      +   EIH + +  G    D ++  +L+ FY+    + S H++
Sbjct: 160 NSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFDAVLS-HRV 218

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSH 124
           F+ ++  ++VSW  II+G    G   +A+ ++  +    +K +A T++ V+ AC+     
Sbjct: 219 FSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCL 278

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           +LG  +H  +++    N++ + NA+L+ Y   GSL S   LF  +P  +   W +MI  Y
Sbjct: 279 RLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSY 338

Query: 185 AERGFCKEAVSVFQEM--EKTKEAEPNEATLVNVLSACSSISALS-FGKYVHSYISTRYD 241
              GF  EA+++F +M  E+ KE   +  T+  +LS C+ ++  S +G+ +H++ + +  
Sbjct: 339 IGFGFHAEAIALFIKMRLERIKE---DVRTIAIMLSLCNDLNDGSIWGRGLHAH-AMKSG 394

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
           + +   +GNA+++MYVK   +  A  VF  +   D ISW+T+IS  A +    +A +LF 
Sbjct: 395 IELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFL 454

Query: 302 LMIINAVFPDDVTFIALISACSHG 325
           +M  + +  +  T ++L++ C  G
Sbjct: 455 MMCESEIKFNSYTIVSLLAFCKDG 478


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 155/457 (33%), Positives = 269/457 (58%), Gaps = 9/457 (1%)

Query: 8   YNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHD-IFIQNSLLHFYVTVKDIFSAHQ 66
           YN Y+  + LK C+     ++   +HAH+++   L + + +QN +++ Y     +  A +
Sbjct: 87  YNLYS--KLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARR 144

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVS 123
           +F+ +   D+V+WT +I+G S+    ++A+ +F     + ++PN  TL S+L A  S   
Sbjct: 145 MFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHG 204

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
              G  +HA  L+   ++++ + +A++D Y RCG + +    F  MP ++ VSW  +I G
Sbjct: 205 LDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISG 264

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           +A +G  + A+ +  +M++ K  +P   T  +V SAC+SI AL  GK+VH+++  +  L 
Sbjct: 265 HARKGEGEHALHLLWKMQR-KNFQPTHFTYSSVFSACASIGALEQGKWVHAHM-IKSGLK 322

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           +   +GN +++MY K G +  A +VF+ L   D +SW+T+++G A +G G++ L  F  M
Sbjct: 323 LIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQM 382

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
           +   + P++++F+ +++ACSH GL+D+GL  F+ M   Y++ P + HY   VD+ GR GL
Sbjct: 383 LRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKK-YKVEPDVPHYVTFVDLLGRVGL 441

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           L+ AE FIREMPIE   +VWGALL ACR+H+N E+     +          G   L+SN 
Sbjct: 442 LDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNI 501

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +A A RW D  K+R  ++  G+KK+  CSW+E+  ++
Sbjct: 502 YASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAV 538



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 166/315 (52%), Gaps = 8/315 (2%)

Query: 95  AIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSL-RNLNENNIILDNAILDFY 153
           A+D+     + P+ N    +L  C+ L   + G+ +HAH +  +  +N+++L N I++ Y
Sbjct: 74  ALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMY 133

Query: 154 IRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATL 213
            +CG L     +F +MP +++V+WT +I G+++    ++A+ +F +M +    +PN  TL
Sbjct: 134 AKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLG-LQPNHFTL 192

Query: 214 VNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 273
            ++L A  S   L  G  +H++   +Y    S  VG+A+++MY +CG +  A   F+ + 
Sbjct: 193 SSLLKASGSEHGLDPGTQLHAFC-LKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMP 251

Query: 274 YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI 333
            K ++SW+ +ISG A  G G  AL L   M      P   T+ ++ SAC+  G ++QG  
Sbjct: 252 TKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKW 311

Query: 334 LFKAM-STVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI 392
           +   M  +  +++  + +   ++DMY +AG +++A+     + ++ +   W  +L  C  
Sbjct: 312 VHAHMIKSGLKLIAFIGN--TLLDMYAKAGSIDDAKRVFDRL-VKPDVVSWNTMLTGCAQ 368

Query: 393 HR-NDEMFDRIRQDL 406
           H    E  DR  Q L
Sbjct: 369 HGLGKETLDRFEQML 383



 Score = 38.1 bits (87), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
           G   L    L+   ++ PD   +  L+  C+  G V+QG I+   +   + +   +    
Sbjct: 68  GGTGLYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQN 127

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
            +V+MY + G L++A     EMP + +   W AL+
Sbjct: 128 IIVNMYAKCGCLDDARRMFDEMPTK-DMVTWTALI 161


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 160/436 (36%), Positives = 254/436 (58%), Gaps = 8/436 (1%)

Query: 26  HQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISG 85
           H KAL  H + +     + + +   LL  Y   + +  A +IF+ +   + VSW+ +I G
Sbjct: 228 HGKAL--HGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGG 285

Query: 86  LSKCGFHKEAIDMFCGIDVK----PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNEN 141
                  KEA+++F  + +K    P   TL SVL AC+ L     G+ +H + ++  +  
Sbjct: 286 YVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVL 345

Query: 142 NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME 201
           +I+L N +L  Y +CG +      F +M  ++ VS++ ++ G  + G    A+S+F+ M+
Sbjct: 346 DILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQ 405

Query: 202 KTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGD 261
            +   +P+  T++ VL ACS ++AL  G   H Y+  R   +   L+ NA+I+MY KCG 
Sbjct: 406 LSG-IDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVR-GFATDTLICNALIDMYSKCGK 463

Query: 262 VGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISA 321
           +  A +VFN +   D +SW+ +I G  ++G G +AL LF  ++   + PDD+TFI L+S+
Sbjct: 464 ISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSS 523

Query: 322 CSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 381
           CSH GLV +G + F AMS  + IVP+M+H  C+VD+ GRAGL++EA  FIR MP E +  
Sbjct: 524 CSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVR 583

Query: 382 VWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIR 441
           +W ALL+ACRIH+N E+ + + + + +    S G F L+SN ++ A RW+D   IR   +
Sbjct: 584 IWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQK 643

Query: 442 RMGLKKKTGCSWIEVN 457
             GLKK  GCSWIE+N
Sbjct: 644 DWGLKKIPGCSWIEIN 659



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 123/401 (30%), Positives = 203/401 (50%), Gaps = 16/401 (3%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML      N YT+   LKACS     +  +EIH+H   +G   D+F+  +L+ FY     
Sbjct: 100 MLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGI 159

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           +  A ++F+S+   DVV+W  +I+G S  G   +A+ +   +    + PN++T+V VL  
Sbjct: 160 LVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPT 219

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
                +   GKA+H + +R   +N +++   +LD Y +C  L     +F  M  RN VSW
Sbjct: 220 VGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSW 279

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
           + MIGGY      KEA+ +F +M      +P   TL +VL AC+ ++ LS G+ +H YI 
Sbjct: 280 SAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYI- 338

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            +    +  L+GN +++MY KCG +  AI+ F+ +  KD +S+S ++SG   NG    AL
Sbjct: 339 IKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVAL 398

Query: 298 QLFSLMIINAVFPDDVTFIALISACSH-----GGLVDQGLILFKAMSTVYEIVPQMQHYA 352
            +F +M ++ + PD  T + ++ ACSH      G    G ++ +  +T   I   +    
Sbjct: 399 SIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNAL---- 454

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
             +DMY + G +  A      M    +   W A++    IH
Sbjct: 455 --IDMYSKCGKISFAREVFNRMD-RHDIVSWNAMIIGYGIH 492



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/370 (29%), Positives = 195/370 (52%), Gaps = 15/370 (4%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           +   L+AC  +    +A +IH H ++     D  + + L   Y++   +  A ++F+ + 
Sbjct: 11  YLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIP 70

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGKA 129
            P V+ W  II   +  G    AID++     + V+PN  T   VL ACS L++ + G  
Sbjct: 71  NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           IH+H+     E+++ +  A++DFY +CG L     LF  M  R+VV+W  MI G +  G 
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGL 190

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR-YDLSVSNLV 248
           C +AV +  +M++     PN +T+V VL       AL  GK +H Y   R +D  V  +V
Sbjct: 191 CDDAVQLIMQMQEEGIC-PNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGV--VV 247

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII-NA 307
           G  +++MY KC  +  A ++F+++  ++++SWS +I G   + C ++AL+LF  MI+ +A
Sbjct: 248 GTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDA 307

Query: 308 VFPDDVTFIALISACSHGGLVDQGLIL---FKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
           + P  VT  +++ AC+    + +G  L      + +V +I+        ++ MY + G++
Sbjct: 308 MDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNT----LLSMYAKCGVI 363

Query: 365 EEAEAFIREM 374
           ++A  F  EM
Sbjct: 364 DDAIRFFDEM 373



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 147/317 (46%), Gaps = 17/317 (5%)

Query: 109 NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168
           N  + +L AC    S    K IH H L+N +  +  + + +   Y+ C  +     LF +
Sbjct: 9   NNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDE 68

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           +P  +V+ W  +I  YA  G    A+ ++  M       PN+ T   VL ACS + A+  
Sbjct: 69  IPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLG-VRPNKYTYPFVLKACSGLLAIED 127

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
           G  +HS+ +  + L     V  A+++ Y KCG +  A ++F+ ++++D ++W+ +I+G +
Sbjct: 128 GVEIHSH-AKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCS 186

Query: 289 MNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQM 348
           + G    A+QL   M    + P+  T + ++        +  G    KA+   Y +    
Sbjct: 187 LYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHG----KALHG-YCVRRSF 241

Query: 349 QHYACV----VDMYGRAGLLEEAEAFIREMPI--EAEWS--VWGALLNACRIHRNDEMFD 400
            +   V    +DMY +   L  A      M +  E  WS  + G + + C +    E+FD
Sbjct: 242 DNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDC-MKEALELFD 300

Query: 401 R-IRQDLVNKKGVSVGT 416
           + I +D ++   V++G+
Sbjct: 301 QMILKDAMDPTPVTLGS 317



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 3/111 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L ACS     Q     H ++I  G   D  I N+L+  Y     I  A ++FN +
Sbjct: 415 TMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRM 474

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACS 119
              D+VSW  +I G    G   EA+ +F     + +KP+  T + +LS+CS
Sbjct: 475 DRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCS 525


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 153/452 (33%), Positives = 262/452 (57%), Gaps = 6/452 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L AC+ +        +H + ++ G + +  + N+LL  Y    D  S +QIF S+
Sbjct: 520 TLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSM 579

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              +VVSWT +I+   + G   +   +   +    ++P+   + S L A +   S K GK
Sbjct: 580 GQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGK 639

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
           ++H +++RN  E  + + NA+++ Y++C ++     +F ++  ++V+SW T+IGGY+   
Sbjct: 640 SVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNN 699

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
           F  E+ S+F +M    +  PN  T+  +L A +SIS+L  G+ +H+Y   R  L  S   
Sbjct: 700 FPNESFSLFSDM--LLQFRPNAVTMTCILPAAASISSLERGREIHAYALRRGFLEDS-YA 756

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            NA+++MYVKCG + +A  +F+ L  K+ ISW+ +I+G  M+G G+ A+ LF  M  + +
Sbjct: 757 SNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGI 816

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD  +F A++ AC H GL  +G   FKAM   Y+I P+++HY C+VD+  R G L+EA 
Sbjct: 817 EPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEAL 876

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
            FI  MPIE + S+W +LL+ CRIH+N ++ +++   +   +  + G + L++N +A A+
Sbjct: 877 EFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLLANIYAEAE 936

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           RWE   K++++I   GL++ TG SWIEV   +
Sbjct: 937 RWEAVKKLKNKIGGRGLRENTGYSWIEVRSKV 968



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 124/466 (26%), Positives = 222/466 (47%), Gaps = 27/466 (5%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M  C  S + +  +  LK  S      +   IH  + + G      + N+L+  Y     
Sbjct: 195 MQCCGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGR 254

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           +  A ++F+S+   D +SW ++I G    G+H  A+D+F  +     + ++ T++SVL A
Sbjct: 255 MEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPA 314

Query: 118 CSSLVSHKLGKAIHAHSLRN-----LNENNIILDNAILD-----FYIRCGSLASCGYLFV 167
           C+ L    +GKA+H +S+++     L+     +D+A L       Y++CG +AS   +F 
Sbjct: 315 CAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFD 374

Query: 168 KMP-KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 226
            M  K NV  W  ++GGYA+ G  +E++S+F +M +   A P+E  +  +L   + +S  
Sbjct: 375 AMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIA-PDEHAISCLLKCITCLSCA 433

Query: 227 SFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
             G   H YI  +        V NA+I+ Y K   +G A+ VFN +  +D ISW++VISG
Sbjct: 434 RDGLVAHGYI-VKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISG 492

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 346
            + NG   +A++LF  M       D VT ++++ AC+       G ++    S    ++ 
Sbjct: 493 CSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVV-HGYSVKTGLIG 551

Query: 347 QMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIR--- 403
           +      ++DMY      +      R M  +   S W A++ +   +    +FD++    
Sbjct: 552 ETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVS-WTAMITS---YMRAGLFDKVAGLL 607

Query: 404 QDLVNKKGVSVGTFALMS--NTFAGADRWEDTNKIRDEIRRMGLKK 447
           Q++V   G+    FA+ S  + FAG +  +    +     R G++K
Sbjct: 608 QEMV-LDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEK 652



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 145/279 (51%), Gaps = 4/279 (1%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +  T AL A +     ++   +H + I  G    + + N+L+  YV  +++  A  IF+ 
Sbjct: 620 FAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDR 679

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCG--IDVKPNANTLVSVLSACSSLVSHKLGK 128
           V   DV+SW T+I G S+  F  E+  +F    +  +PNA T+  +L A +S+ S + G+
Sbjct: 680 VTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQFRPNAVTMTCILPAAASISSLERGR 739

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IHA++LR     +    NA++D Y++CG+L     LF ++ K+N++SWT MI GY   G
Sbjct: 740 EIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHG 799

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
           F K A+++F++M +    EP+ A+   +L AC      + G+     +   Y +      
Sbjct: 800 FGKHAIALFEQM-RGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKH 858

Query: 249 GNAVINMYVKCGDVGIAIQ-VFNMLAYKDKISWSTVISG 286
              ++++  + GD+  A++ + +M    D   W +++ G
Sbjct: 859 YTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHG 897



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 176/370 (47%), Gaps = 40/370 (10%)

Query: 47  IQNSLLHFYVTVKDIFSAHQIFNSVV--FPDVVSWTTIISGLSKCGFHKEAIDMF----- 99
           +   L+  Y+   D+  A  +F+ +     DV  WT+++S  +K G  +EA+ +F     
Sbjct: 138 LGKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQC 197

Query: 100 CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSL 159
           CG  V P+A+ +  VL   SSL S   G+ IH    +        + NA++  Y RCG +
Sbjct: 198 CG--VSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRM 255

Query: 160 ASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
                +F  M  R+ +SW +MIGG    G+   AV +F +M  ++  E +  T+++VL A
Sbjct: 256 EDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMW-SQGTEISSVTVLSVLPA 314

Query: 220 CSSISALSFGKYVHSYISTRYDL-----SVSN-----LVGNAVINMYVKCGDVGIAIQVF 269
           C+ +     GK VH Y S +  L     SV +      +G+ ++ MYVKCGD+  A +VF
Sbjct: 315 CAGLGYGLIGKAVHGY-SVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVF 373

Query: 270 NMLAYKDKIS-WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALIS-----ACS 323
           + ++ K  +  W+ ++ G A  G   ++L LF  M    + PD+     L+      +C+
Sbjct: 374 DAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCA 433

Query: 324 HGGLVDQGLIL---FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 380
             GLV  G I+   F A   V            ++  Y ++ ++ +A      MP +   
Sbjct: 434 RDGLVAHGYIVKLGFGAQCAVCN---------ALISFYAKSNMIGDAVLVFNRMPRQDTI 484

Query: 381 SVWGALLNAC 390
           S W ++++ C
Sbjct: 485 S-WNSVISGC 493



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 141/303 (46%), Gaps = 19/303 (6%)

Query: 101 GIDVKPNANTLVSVLSACSSLVSHKLGKA-IHAHSLRNLNENNIILDNAILDFYIRCGSL 159
           G+DV+     +V +     SL + K   A I A S         +L   ++  Y++CG L
Sbjct: 94  GVDVRSYC-MVVQLCGEERSLEAAKRAHALIRASSAAATGGKGSVLGKRLVLAYLKCGDL 152

Query: 160 ASCGYLFVKMPKR--NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVL 217
                +F  MP +  +V  WT+++  YA+ G  +EAVS+F++M+      P+   +  VL
Sbjct: 153 GEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCG-VSPDAHAVSCVL 211

Query: 218 SACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK 277
              SS+ +L+ G+ +H  +  +  L  +  V NA+I +Y +CG +  A +VF+ +  +D 
Sbjct: 212 KCVSSLGSLTEGEVIHGLLE-KLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDA 270

Query: 278 ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS-----------HGG 326
           ISW+++I G   NG    A+ LFS M         VT ++++ AC+           HG 
Sbjct: 271 ISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGY 330

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 386
            V  GL+    + +V   +      + +V MY + G +  A      M  +    VW  +
Sbjct: 331 SVKSGLLW--GLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLI 388

Query: 387 LNA 389
           +  
Sbjct: 389 MGG 391



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 3/113 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T T  L A +     ++  EIHA+ +  G L D +  N+L+  YV    +  A  +F
Sbjct: 718 NAVTMTCILPAAASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLF 777

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSAC 118
           + +   +++SWT +I+G    GF K AI +F    G  ++P+A +  ++L AC
Sbjct: 778 DRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYAC 830


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 166/482 (34%), Positives = 261/482 (54%), Gaps = 57/482 (11%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHF-YVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
           ++HA  I+ G + D      ++ F   + +DI  A  +F  +  P+   W TI+  L++ 
Sbjct: 37  QLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRVLAET 96

Query: 90  G---FHKEAIDMF----CGIDVKPNANTLVSVLSACSSLVSHKLGKAIH----------- 131
                  EA+ +F    C   VKPN  T  SVL AC+     + GK IH           
Sbjct: 97  NDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHED 156

Query: 132 -------------------AHSL-----------------RNLNENNIILDNAILDFYIR 155
                              A+SL                 +   + N++L N ++D  +R
Sbjct: 157 EFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVR 216

Query: 156 CGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVN 215
            G + S   LF +MP+R+VVSW  MI GYA+ G   EA+++FQEM+ +   +PN  TLV+
Sbjct: 217 LGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSN-IDPNYVTLVS 275

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           VL A + I AL  GK++H Y + +  + + +++G+A+++MY KCG +  A+QVF  L  +
Sbjct: 276 VLPAIARIGALELGKWIHLY-AGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKR 334

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILF 335
           + I+WS +I   AM+G    A+  F LM    V P+DV +I ++SACSH GLV++G   F
Sbjct: 335 NAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFF 394

Query: 336 KAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN 395
             M  V  + P+++HY C+VD+ GRAG LEEAE  IR MPIE +  +W ALL AC++H+N
Sbjct: 395 SHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKN 454

Query: 396 DEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
            +M +R+ + L+       G++  +SN +A    WE   ++R +++ M ++K  GCSWIE
Sbjct: 455 LKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIE 514

Query: 456 VN 457
           ++
Sbjct: 515 IH 516



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 155/333 (46%), Gaps = 52/333 (15%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFY------------- 55
           N +TF   LKAC+ A   ++  +IH  ++++G   D F+ ++L+  Y             
Sbjct: 121 NRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLF 180

Query: 56  ----------------------------------VTVKDIFSAHQIFNSVVFPDVVSWTT 81
                                             V + DI SA  +F+ +    VVSW  
Sbjct: 181 CKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNV 240

Query: 82  IISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNL 138
           +ISG ++ G   EAI++F  +   ++ PN  TLVSVL A + + + +LGK IH ++ +N 
Sbjct: 241 MISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNK 300

Query: 139 NENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQ 198
            E + +L +A++D Y +CGS+     +F  +PKRN ++W+ +IG +A  G  ++A+  F 
Sbjct: 301 IEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFH 360

Query: 199 EMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVK 258
            M K     PN+   + +LSACS    +  G+   S++     L         ++++  +
Sbjct: 361 LMGKAG-VTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGR 419

Query: 259 CGDVGIAIQVF-NMLAYKDKISWSTVISGLAMN 290
            G +  A ++  NM    D + W  ++    M+
Sbjct: 420 AGHLEEAEELIRNMPIEPDDVIWKALLGACKMH 452


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 154/458 (33%), Positives = 262/458 (57%), Gaps = 9/458 (1%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S N  T    L A +  +  +   EIH   +  G + D+ +   +L  Y   + I  A +
Sbjct: 217 SPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARR 276

Query: 67  IFNSV-VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPN------ANTLVSVLSACS 119
           IF+ + +  + V+W+ ++     C F +EA+++FC + +  +      A TL +V+  C+
Sbjct: 277 IFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCA 336

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
           +L     G  +H +++++    ++++ N +L  Y +CG +      F +M  R+ VS+T 
Sbjct: 337 NLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTA 396

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           +I GY + G  +E + +F EM+ +    P +ATL +VL AC+ ++ L +G   H Y +  
Sbjct: 397 IISGYVQNGNSEEGLRMFLEMQLSG-INPEKATLASVLPACAHLAGLHYGSCSHCY-AII 454

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
              +   ++ NA+I+MY KCG +  A +VF+ +  +  +SW+T+I    ++G G +AL L
Sbjct: 455 CGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLL 514

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
           F  M    + PDDVTFI LISACSH GLV +G   F AM+  + I+P+M+HYAC+VD+  
Sbjct: 515 FDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLS 574

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFAL 419
           RAGL +E  +FI +MP+E +  VWGALL+ACR+++N E+ + + + +      S G F L
Sbjct: 575 RAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVL 634

Query: 420 MSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +SN ++   RW+D  ++R   +  G +K  GCSWIE++
Sbjct: 635 LSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEIS 672



 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 112/406 (27%), Positives = 199/406 (49%), Gaps = 23/406 (5%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    + N +TF   LKACS      +  EIH  +       ++++  +L+ FY     
Sbjct: 110 MLGYGITPNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGC 169

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI------DVKPNANTLVSV 114
           +  A ++F+ +   DVV+W ++ISG S    H+ + D    +      DV PN++T+V V
Sbjct: 170 LDDAKEVFDKMHKRDVVAWNSMISGFS---LHEGSYDEVARLLVQMQNDVSPNSSTIVGV 226

Query: 115 LSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRN 173
           L A + + S + GK IH   +R     ++++   ILD Y +C  +     +F  M   +N
Sbjct: 227 LPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKN 286

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQE--MEKTKEAEPNEATLVNVLSACSSISALSFGKY 231
            V+W+ M+G Y    F +EA+ +F +  M K      +  TL  V+  C++++ LS G  
Sbjct: 287 EVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTC 346

Query: 232 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNG 291
           +H Y + +    +  +VGN +++MY KCG +  A++ FN +  +D +S++ +ISG   NG
Sbjct: 347 LHCY-AIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNG 405

Query: 292 CGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY 351
              + L++F  M ++ + P+  T  +++ AC+H   +  G     + S  Y I+      
Sbjct: 406 NSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYG-----SCSHCYAIICGFTAD 460

Query: 352 ACV----VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
             +    +DMY + G ++ A      M      S W  ++ A  IH
Sbjct: 461 TMICNALIDMYAKCGKIDTARKVFDRMHKRGIVS-WNTMIIAYGIH 505



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 187/381 (49%), Gaps = 21/381 (5%)

Query: 14  TQALKACSLAHPHQKALEIHAHVIEYGH-LHDIFIQN------SLLHFYVTVKDIFSAHQ 66
           T  L++C  +    +   IH H+++  H  H+  + N       L+  Y+   ++  A  
Sbjct: 13  TVLLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKIARH 72

Query: 67  IFNSVVF--PDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSL 121
           +F+ +     +VV W  +I   +  G ++EAID++    G  + PN  T   VL ACS+L
Sbjct: 73  VFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSAL 132

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
                G+ IH    R   E+N+ +  A++DFY +CG L     +F KM KR+VV+W +MI
Sbjct: 133 KEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMI 192

Query: 182 GGYA-ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
            G++   G   E   +  +M+   +  PN +T+V VL A + +++L  GK +H +   R 
Sbjct: 193 SGFSLHEGSYDEVARLLVQMQ--NDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGF-CVRR 249

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA-YKDKISWSTVISGLAMNGCGRQALQL 299
                 +VG  ++++Y KC  +  A ++F+M+   K++++WS ++    +    R+AL+L
Sbjct: 250 GFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALEL 309

Query: 300 FSLMII---NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
           F  +++   + +    VT   +I  C++   +  G  L    +     V  +     ++ 
Sbjct: 310 FCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCL-HCYAIKSGFVLDLMVGNTLLS 368

Query: 357 MYGRAGLLEEAEAFIREMPIE 377
           MY + G++  A  F  EM + 
Sbjct: 369 MYAKCGIINGAMRFFNEMDLR 389


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  298 bits (762), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 162/457 (35%), Positives = 255/457 (55%), Gaps = 5/457 (1%)

Query: 8   YNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           Y+ YTF  ALKAC+ +       EIHA  ++ G     F+ N+L   Y     +     +
Sbjct: 215 YDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTL 274

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSH 124
           F  +   DVVSWTTII+ L + G  + A+  F  +   DV PN  T  +V+S C++L   
Sbjct: 275 FEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARI 334

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           + G+ +HA  L      ++ ++N+I+  Y +CG L S   +F +M +R++VSW+T+I GY
Sbjct: 335 EWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGY 394

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           ++ G   EA  +   M + +  +P E  L +VLSAC +++ L  GK +H+Y+ +   L  
Sbjct: 395 SQGGHVSEAFELLSWM-RMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLS-IGLEH 452

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           + +V +A+INMY KCG +  A ++F+     D +SW+ +I+G A +G  R+ + LF  + 
Sbjct: 453 TAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIP 512

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
              + PD VTFI ++SACSH GLVD G   F AMS  Y+I P  +HY C++D+  RAG L
Sbjct: 513 RVGLRPDSVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRL 572

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
            +AE  I  MP   +  VW  LL ACR+H + E   R  + ++  +    GT   ++N +
Sbjct: 573 SDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIY 632

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           A   +W +   IR  ++  G+ K+ G SWI+V   +F
Sbjct: 633 ASKGKWREAADIRKLMKSKGVIKEPGWSWIKVKDLVF 669



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 193/364 (53%), Gaps = 14/364 (3%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +  + A KAC L         +H + ++ G ++ +F+ ++LL  Y     IF   ++F+ 
Sbjct: 117 FILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHE 176

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLG 127
           +   +VVSWT II+GL + G++KEA+  F  +    V+ ++ T    L AC+   +   G
Sbjct: 177 MPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYG 236

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           + IHA +++   + +  + N +   Y +CG L     LF KM  R+VVSWTT+I    + 
Sbjct: 237 REIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQM 296

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G  + AV  F  M ++ +  PNE T   V+S C++++ + +G+ +H+ I     L+ S  
Sbjct: 297 GQEECAVQAFIRMRES-DVSPNEYTFAAVISGCANLARIEWGEQLHALI-LHLGLAASLS 354

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V N+++ MY KCG +  +  +F+ +  +D +SWST+I+G +  G   +A +L S M +  
Sbjct: 355 VENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEG 414

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV----VDMYGRAGL 363
             P +    +++SAC +  +++ G  L       Y +   ++H A V    ++MY + G 
Sbjct: 415 PKPTEFALASVLSACGNMAILEHGKQLH-----AYVLSIGLEHTAMVLSALINMYCKCGS 469

Query: 364 LEEA 367
           +EEA
Sbjct: 470 IEEA 473



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 168/335 (50%), Gaps = 7/335 (2%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID 103
           D+   N  L   V    + +A ++F+ +   D +SWTT+ISG        EA+ +F  + 
Sbjct: 48  DLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMR 107

Query: 104 VKPNANTLVSVLS----ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSL 159
           V+        +LS    AC        G+ +H ++++    N++ + +A+LD Y + G +
Sbjct: 108 VESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKI 167

Query: 160 ASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
                +F +MP RNVVSWT +I G    G+ KEA+  F EM +++  E +  T    L A
Sbjct: 168 FEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSR-VEYDSYTFAIALKA 226

Query: 220 CSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS 279
           C+   AL++G+ +H+  + +    VS+ V N +  MY KCG +   + +F  ++ +D +S
Sbjct: 227 CADSGALNYGREIHAQ-AMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVS 285

Query: 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMS 339
           W+T+I+ L   G    A+Q F  M  + V P++ TF A+IS C++   ++ G  L  A+ 
Sbjct: 286 WTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQL-HALI 344

Query: 340 TVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
               +   +     ++ MY + G L  +     EM
Sbjct: 345 LHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEM 379



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 124/253 (49%), Gaps = 9/253 (3%)

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           L + IH  S  +L E+N  L        ++ G L +   +F KM +++ +SWTT+I GY 
Sbjct: 37  LSQNIHFISQTDLPESNKQLKE-----LVKTGHLGNARRMFDKMSQKDEISWTTLISGYV 91

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
                 EA+ +F+ M        +   L     AC   S +++G+ +H Y + +  L  S
Sbjct: 92  NANDSSEALLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGY-AVKTGLVNS 150

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             VG+A+++MY K G +    +VF+ +  ++ +SW+ +I+GL   G  ++AL  FS M  
Sbjct: 151 VFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWR 210

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
           + V  D  TF   + AC+  G ++ G  I  +AM   +++   + +   +  MY + G L
Sbjct: 211 SRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVAN--TLATMYNKCGKL 268

Query: 365 EEAEAFIREMPIE 377
           E       +M + 
Sbjct: 269 EYGLTLFEKMSMR 281


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  298 bits (762), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 152/432 (35%), Positives = 254/432 (58%), Gaps = 9/432 (2%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           ++HA    +G L +I + N L++FY   + +  A+ +F+ +   D VSW+ ++ G +K G
Sbjct: 80  QVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVG 139

Query: 91  FHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
            +      F     CG   +P+  TL  V+ AC  L + ++G+ IH    +   + +  +
Sbjct: 140 DYINCFGTFRELIRCG--ARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFV 197

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
             A++D Y++C  +    +LF KM +R++V+WT MIGGYAE G   E++ +F++M + + 
Sbjct: 198 CAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKM-REEG 256

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
             P++  +V V+ AC+ + A+   + +  YI  R    +  ++G A+I+MY KCG V  A
Sbjct: 257 VVPDKVAMVTVVFACAKLGAMHKARIIDDYIQ-RKKFQLDVILGTAMIDMYAKCGCVESA 315

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
            ++F+ +  K+ ISWS +I+    +G GR+AL LF +M+ + + PD +T  +L+ ACSH 
Sbjct: 316 REIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHA 375

Query: 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 385
           GLV++GL  F +M   Y +   ++HY CVVD+ GRAG L+EA   I+ M IE +  +WGA
Sbjct: 376 GLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGA 435

Query: 386 LLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445
            L ACR H++  + ++    L+  +  + G + L+SN +A A RWED  KIRD + +  L
Sbjct: 436 FLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRL 495

Query: 446 KKKTGCSWIEVN 457
           KK  G +WIEV+
Sbjct: 496 KKTPGWTWIEVD 507



 Score =  284 bits (726), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 147/432 (34%), Positives = 248/432 (57%), Gaps = 9/432 (2%)

Query: 31   EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
            ++H     +G L ++ + N L+ FY   + +  A+ +F+ +   D VSW+ ++ G +K G
Sbjct: 756  QVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVG 815

Query: 91   FHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
             +      F     CG   +P+  TL  V+ AC  L + ++G+ IH    +   + +  +
Sbjct: 816  DYMNCFGTFRELIRCG--ARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFV 873

Query: 146  DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
              A++D Y +C  +    +LF KM +R++V+WT MIGGYAE G   E++ +F +M + + 
Sbjct: 874  CAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKM-REEG 932

Query: 206  AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
              P++  +V V+ AC+ + A+   + +  YI  R    +  ++G A+I+M+ KCG V  A
Sbjct: 933  VVPDKVAMVTVVFACAKLGAMHKARTIDDYIQ-RKKFQLDVILGTAMIDMHAKCGCVESA 991

Query: 266  IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
             ++F+ +  K+ ISWS +I+    +G GR+AL LF +M+ + + P+ +T ++L+ ACSH 
Sbjct: 992  REIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHA 1051

Query: 326  GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 385
            GLV++GL  F  M   Y +   ++HY CVVD+ GRAG L+EA   I  M  E +  +WGA
Sbjct: 1052 GLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGA 1111

Query: 386  LLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445
             L ACR H++  + ++    L+  +  + G + L+SN +A A RWED  KIRD + +  L
Sbjct: 1112 FLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRRL 1171

Query: 446  KKKTGCSWIEVN 457
            KK  G +WIEV+
Sbjct: 1172 KKIPGWTWIEVD 1183



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 146/290 (50%), Gaps = 5/290 (1%)

Query: 1    MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
            ++ C +  ++YT    ++AC      Q    IH  V ++G   D F+  +L+  Y   ++
Sbjct: 827  LIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCRE 886

Query: 61   IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
            I  A  +F+ +   D+V+WT +I G ++CG   E++ +F  +    V P+   +V+V+ A
Sbjct: 887  IEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFA 946

Query: 118  CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
            C+ L +    + I  +  R   + ++IL  A++D + +CG + S   +F +M ++NV+SW
Sbjct: 947  CAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISW 1006

Query: 178  TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
            + MI  Y   G  ++A+ +F  M ++    PN+ TLV++L ACS    +  G    S + 
Sbjct: 1007 SAMIAAYGYHGQGRKALDLFPMMLRSG-ILPNKITLVSLLYACSHAGLVEEGLRFFSXMW 1065

Query: 238  TRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDKISWSTVISG 286
              Y +         V+++  + G +  A++ + +M   KD+  W   +  
Sbjct: 1066 EDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGA 1115



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 178/379 (46%), Gaps = 45/379 (11%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ++ C +  ++YT    ++AC      Q    IH  V ++G   D F+  +L+  YV  ++
Sbjct: 151 LIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCRE 210

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           I  A  +F+ +   D+V+WT +I G ++CG   E++ +F  +    V P+   +V+V+ A
Sbjct: 211 IEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFA 270

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C+ L +    + I  +  R   + ++IL  A++D Y +CG + S   +F +M ++NV+SW
Sbjct: 271 CAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISW 330

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
           + MI  Y   G  ++A+ +F  M  +    P++ TL ++L ACS    +  G  +  + S
Sbjct: 331 SAMIAAYGYHGQGRKALDLFPMMLSSGML-PDKITLASLLYACSHAGLVEEG--LRFFSS 387

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
              D SV                               D   ++ V+  L   G   +AL
Sbjct: 388 MWEDYSVRT-----------------------------DVKHYTCVVDLLGRAGRLDEAL 418

Query: 298 QLFSLMIINAVFPDDVTFIALISAC-SHGGLVDQGLILFKAMSTVYEIVPQMQ-HYACVV 355
           +L   M I     D+  + A + AC +H  +V    +  KA +++ E+  Q   HY  + 
Sbjct: 419 KLIKSMTIEK---DEGLWGAFLGACRTHKDVV----LAEKAATSLLELQSQNPGHYVLLS 471

Query: 356 DMYGRAGLLEEAEAFIREM 374
           ++Y  AG  E+  A IR++
Sbjct: 472 NIYANAGRWEDV-AKIRDL 489



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 139/287 (48%), Gaps = 7/287 (2%)

Query: 107 NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLF 166
           N    +S L  C +L      + +HA +  +    NI++ N ++ FY    +L     LF
Sbjct: 61  NPKFYISALVNCRNLTQ---VRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLF 117

Query: 167 VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 226
             M  R+ VSW+ M+GG+A+ G        F+E+ +   A P+  TL  V+ AC  +  L
Sbjct: 118 DGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCG-ARPDNYTLPFVIRACRDLKNL 176

Query: 227 SFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
             G+ +H +I  ++ L + + V  A+++MYVKC ++  A  +F+ +  +D ++W+ +I G
Sbjct: 177 QMGRLIH-HIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGG 235

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 346
            A  G   ++L LF  M    V PD V  + ++ AC+  G + +  I+   +      + 
Sbjct: 236 YAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLD 295

Query: 347 QMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
            +   A ++DMY + G +E A      M  E     W A++ A   H
Sbjct: 296 VILGTA-MIDMYAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYH 340


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  298 bits (762), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 161/463 (34%), Positives = 274/463 (59%), Gaps = 7/463 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+S   S +  TF   L + + +   ++  EIH +++ +G   D+F++++L+  Y   +D
Sbjct: 165 MISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRD 224

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           +  A +IF      D+V  T IISG    G + +A+++F  +    + PNA TL SVL A
Sbjct: 225 VGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPA 284

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C+ L +  LGK +HA+ L++  +    + +AI+D Y +CG L     +F +MP+++ V W
Sbjct: 285 CAGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCW 344

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-I 236
             +I   ++ G  +EA+ +F++M +   +  +  ++   LSAC+++ AL  GK +HS+ I
Sbjct: 345 NAIITNCSQNGKPQEAIDLFRQMGREGLSY-DCVSISAALSACANLPALHHGKAIHSFMI 403

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
              +D  V     +A+I+MY KCG++ +A  VF+M+  K+++SW+++I+    +G    +
Sbjct: 404 KGAFDSEV--FAESALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAYGSHGHLEVS 461

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
           L LF  M+ + + PD VTF+ ++SAC H G VD+G+  F+ M+  Y I  +M+HYAC+VD
Sbjct: 462 LALFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHYACIVD 521

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGT 416
           ++GRAG L EA   I+ MP   +  VWG LL ACR+H N E+ +   + L++    + G 
Sbjct: 522 LFGRAGRLNEAFETIKNMPFSPDDGVWGTLLGACRVHGNVELAEVASRCLLDLDPENSGC 581

Query: 417 FALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPS 459
           + L+SN  A A +W    KIR  +++ G++K  G SWIEVN +
Sbjct: 582 YVLLSNVHADAGQWGSVRKIRSLMKKRGVQKVPGYSWIEVNKT 624



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 120/429 (27%), Positives = 213/429 (49%), Gaps = 23/429 (5%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M +C +  N  TF   L  C+     +   ++H  VI  G   D  + N+L+  Y     
Sbjct: 64  MRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQ 123

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           +  A ++FN++   +VV+W  +I+G  + GF  EA  +F  +    V P++ T  S L +
Sbjct: 124 LSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPS 183

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
            +   S K GK IH + LR+    ++ L +A++D Y +C  +     +F +    ++V  
Sbjct: 184 VTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVC 243

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
           T +I GY   G   +A+ +F+ + + K + PN  TL +VL AC+ ++ L+ GK +H+ I 
Sbjct: 244 TAIISGYVLNGLNNDALEIFRWLLEEKMS-PNAVTLASVLPACAGLATLNLGKELHANI- 301

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            ++ L     VG+A+++MY KCG + +A Q+F  +  KD + W+ +I+  + NG  ++A+
Sbjct: 302 LKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAI 361

Query: 298 QLFSLMIINAVFPDDVTFIALISACS------HGGLVDQGLILFKAMSTVYEIVPQMQHY 351
            LF  M    +  D V+  A +SAC+      HG  +   +I     S V+         
Sbjct: 362 DLFRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSEVFA-------E 414

Query: 352 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDRIRQDLV 407
           + ++DMYG+ G L  A      M  + E S W +++ A   H + E    +F ++ +D +
Sbjct: 415 SALIDMYGKCGNLSVARCVFDMMREKNEVS-WNSIIAAYGSHGHLEVSLALFHKMLEDGI 473

Query: 408 NKKGVSVGT 416
               V+  T
Sbjct: 474 QPDHVTFLT 482



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 191/375 (50%), Gaps = 12/375 (3%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI- 102
           D F+ +SL+  Y     I  A ++F+ +   D V W  +++G  KCG    A+ +F  + 
Sbjct: 6   DEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMR 65

Query: 103 --DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLA 160
               KPN+ T  SVLS C+S    + G  +H   +      + ++ NA++  Y + G L+
Sbjct: 66  NCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLS 125

Query: 161 SCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
               LF  MP  NVV+W  MI G+ + GF  EA  +F EM  +    P+  T  + L + 
Sbjct: 126 DALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEM-ISAGVSPDSITFASFLPSV 184

Query: 221 SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
           +  ++L  GK +H YI  R+ +++   + +A+I++Y KC DVG+A ++F      D +  
Sbjct: 185 TESASLKQGKEIHGYI-LRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVC 243

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340
           + +ISG  +NG    AL++F  ++   + P+ VT  +++ AC+  GL    L      + 
Sbjct: 244 TAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACA--GLATLNLGKELHANI 301

Query: 341 VYEIVPQMQHY-ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEM 398
           +   + + +H  + ++DMY + G L+ A    R MP E +   W A++  C  + +  E 
Sbjct: 302 LKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMP-EKDAVCWNAIITNCSQNGKPQEA 360

Query: 399 FDRIRQDLVNKKGVS 413
            D  RQ  + ++G+S
Sbjct: 361 IDLFRQ--MGREGLS 373



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 67/135 (49%), Gaps = 3/135 (2%)

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
            +V   VG+++I +Y + G +  A ++F+ +  KD + W+ +++G    G    A+++F 
Sbjct: 3   FNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFE 62

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFK-AMSTVYEIVPQMQHYACVVDMYGR 360
            M      P+ +TF +++S C+   L + G  L    +S  +   P + +   +V MY +
Sbjct: 63  DMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVAN--ALVAMYSK 120

Query: 361 AGLLEEAEAFIREMP 375
            G L +A      MP
Sbjct: 121 FGQLSDALKLFNTMP 135


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 156/452 (34%), Positives = 272/452 (60%), Gaps = 11/452 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L A +  +   +  E+H +++      D+F+ ++L+  Y   + +  A  +++S 
Sbjct: 350 TLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSS 409

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              DVV  +T+ISG    G  +EA+ MF  +    ++PNA  + SVL AC+S+ + KLG+
Sbjct: 410 KAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQ 469

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H+++L+N  E    +++A++D Y +CG L    Y+F K+  ++ V+W +MI  +A+ G
Sbjct: 470 ELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNG 529

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI---STRYDLSVS 245
             +EA+++F+EM   +  + +  T+ +VLSAC+S+ A+ +GK +H  +     R DL   
Sbjct: 530 EPEEALNLFREM-CMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADL--- 585

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
               +A+I+MY KCG++  A +VF  +  K+++SW+++I+     G  ++++ L   M  
Sbjct: 586 -FAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQE 644

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
                D VTF+AL+SAC+H G V +GL LF+ M+  Y+I P+M+H+AC+VD+Y RAG L+
Sbjct: 645 EGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLD 704

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           +A   I +MP + +  +WGALL+ACR+HRN E+ +   Q+L      + G + LMSN  A
Sbjct: 705 KAMELIVDMPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINA 764

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            A RW+  +K+R  ++   ++K  G SW++VN
Sbjct: 765 VAGRWDGVSKVRRLMKDTKVQKIPGYSWVDVN 796



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 200/366 (54%), Gaps = 15/366 (4%)

Query: 29  ALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
            +++H   ++YG   ++ + N+L+  Y   K +    ++F  +   D+V+W  +ISG  +
Sbjct: 266 GVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQ 325

Query: 89  CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
            GF  +A+ +FC +    ++P++ TLVS+L A + L     GK +H + +RN    ++ L
Sbjct: 326 NGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFL 385

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            +A++D Y +C ++     ++      +VV  +TMI GY   G  +EAV +F+ + + + 
Sbjct: 386 VSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLE-QG 444

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
             PN   + +VL AC+S++A+  G+ +HSY +   Y+      V +A+++MY KCG + +
Sbjct: 445 IRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRC--YVESALMDMYAKCGRLDL 502

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
           +  +F+ ++ KD+++W+++IS  A NG   +AL LF  M +  V   +VT  +++SAC+ 
Sbjct: 503 SHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACAS 562

Query: 325 GGLVDQGLILFKAMSTVY---EIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 381
              +  G    K +  V     I   +   + ++DMYG+ G LE A      MP + E S
Sbjct: 563 LPAIYYG----KEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVS 618

Query: 382 VWGALL 387
            W +++
Sbjct: 619 -WNSII 623



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 182/361 (50%), Gaps = 8/361 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +TF   +K+C+          +H      G   D+F+ ++L+  Y     ++ A Q+F
Sbjct: 145 DSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVF 204

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHK 125
           + +   D V W  ++ G  K G    A+++F  +     +PN  TL   LS  ++     
Sbjct: 205 DGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLF 264

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G  +H  +++   E+ + + N ++  Y +C  L     LF  MP+ ++V+W  MI G  
Sbjct: 265 FGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCV 324

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + GF  +A+ +F +M+K+    P+  TLV++L A + ++  + GK +H YI  R  + + 
Sbjct: 325 QNGFVDQALLLFCDMQKSG-IRPDSVTLVSLLPALTDLNGFNQGKELHGYI-VRNCVHMD 382

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             + +A++++Y KC  V +A  V++     D +  ST+ISG  +NG  ++A+++F  ++ 
Sbjct: 383 VFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLE 442

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFK-AMSTVYEIVPQMQHYACVVDMYGRAGLL 364
             + P+ V   +++ AC+    +  G  L   A+   YE    ++  + ++DMY + G L
Sbjct: 443 QGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVE--SALMDMYAKCGRL 500

Query: 365 E 365
           +
Sbjct: 501 D 501



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 160/325 (49%), Gaps = 13/325 (4%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYG-HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV---V 72
           L+ C         L++H   +  G H  D  +Q  L+  YV  +    A  +F+S+    
Sbjct: 46  LRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGA 105

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNA-----NTLVSVLSACSSLVSHKLG 127
               + W  +I GL+  G ++ A+  +  +   P+A     +T   V+ +C++L +  LG
Sbjct: 106 AACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALG 165

Query: 128 KAIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           + +H  + R L  + ++ + +A++  Y   G L     +F  M +R+ V W  M+ GY +
Sbjct: 166 RLVH-RTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVK 224

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
            G    AV +F +M +    EPN ATL   LS  ++ S L FG  +H+ ++ +Y L    
Sbjct: 225 AGSVSSAVELFGDM-RASGCEPNFATLACFLSVSATESDLFFGVQLHT-LAVKYGLESEV 282

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            V N +++MY KC  +    ++F ++   D ++W+ +ISG   NG   QAL LF  M  +
Sbjct: 283 AVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKS 342

Query: 307 AVFPDDVTFIALISACSHGGLVDQG 331
            + PD VT ++L+ A +     +QG
Sbjct: 343 GIRPDSVTLVSLLPALTDLNGFNQG 367



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 146/280 (52%), Gaps = 5/280 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N       L AC+     +   E+H++ ++  +    +++++L+  Y     +  +H IF
Sbjct: 448 NAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIF 507

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHK 125
           + +   D V+W ++IS  ++ G  +EA+++F   C   VK +  T+ SVLSAC+SL +  
Sbjct: 508 SKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIY 567

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK IH   ++     ++  ++A++D Y +CG+L     +F  MP++N VSW ++I  Y 
Sbjct: 568 YGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYG 627

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G  KE+VS+ + M++ +  + +  T + ++SAC+    +  G  +   ++  Y ++  
Sbjct: 628 AYGLVKESVSLLRHMQE-EGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPR 686

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DKISWSTVI 284
                 ++++Y + G +  A+++   + +K D   W  ++
Sbjct: 687 MEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALL 726



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 13/183 (7%)

Query: 8   YNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           Y++ T +  L AC+         EIH  VI+     D+F +++L+  Y    ++  AH++
Sbjct: 548 YSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRV 607

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSH 124
           F S+   + VSW +II+     G  KE++ +   +     K +  T ++++SAC+     
Sbjct: 608 FESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQV 667

Query: 125 KLGKAIHAHSLRNLNENNIILDN-----AILDFYIRCGSLASCGYLFVKMP-KRNVVSWT 178
           + G  +     R + E   I         ++D Y R G L     L V MP K +   W 
Sbjct: 668 QEGLRL----FRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWG 723

Query: 179 TMI 181
            ++
Sbjct: 724 ALL 726



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 93/220 (42%), Gaps = 11/220 (5%)

Query: 213 LVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 272
           L+ VL  C S S LS G  VH    T    +    +   ++ MYV       A+ VF+ L
Sbjct: 42  LLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSL 101

Query: 273 ---AYKDKISWSTVISGLAMNGCGRQALQLFSLMII--NAVFPDDVTFIALISACSHGGL 327
              A    + W+ +I GL M G  R AL  +  M    +A  PD  TF  ++ +C+  G 
Sbjct: 102 PRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGA 161

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           +  G ++ +   T+  +   M   + ++ MY   GLL +A      M  E +  +W  ++
Sbjct: 162 IALGRLVHRTARTL-GLDGDMFVGSALIKMYANGGLLWDARQVFDGMA-ERDCVLWNVMM 219

Query: 388 N----ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           +    A  +    E+F  +R         ++  F  +S T
Sbjct: 220 DGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSAT 259


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 158/454 (34%), Positives = 272/454 (59%), Gaps = 15/454 (3%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L A +  +   +  E+H +++      D+F+ ++L+  Y   + +  A  +++S 
Sbjct: 350 TLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSS 409

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              DVV  +T+ISG    G  +EA+ MF  +    ++PNA  + SVL AC+S+ + KLG+
Sbjct: 410 KAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQ 469

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H+++L+N  E    +++A++D Y +CG L    Y+F K+  ++ V+W +MI  +A+ G
Sbjct: 470 ELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNG 529

Query: 189 FCKEAVSVFQEM--EKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI---STRYDLS 243
             +EA+++F+EM  E  K    +  T+ +VLSAC+S+ A+ +GK +H  +     R DL 
Sbjct: 530 EPEEALNLFREMCMEGVKY---SNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADL- 585

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
                 +A+I+MY KCG++  A +VF  +  K+++SW+++I+     G  ++++ L   M
Sbjct: 586 ---FAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHM 642

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
                  D VTF+AL+SAC+H G V +GL LF+ M+  Y+I P+M+H+AC+VD+Y RAG 
Sbjct: 643 QEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGK 702

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           L++A   I +MP + +  +WGALL+ACR+HRN E+ +   Q+L      + G + LMSN 
Sbjct: 703 LDKAMELIVDMPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNI 762

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            A A RW+  +K+R  ++   ++K  G SW++VN
Sbjct: 763 NAVAGRWDGVSKVRRLMKDTKVQKIPGYSWVDVN 796



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 200/366 (54%), Gaps = 15/366 (4%)

Query: 29  ALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
            +++H   ++YG   ++ + N+L+  Y   K +    ++F  +   D+V+W  +ISG  +
Sbjct: 266 GVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQ 325

Query: 89  CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
            GF  +A+ +FC +    ++P++ TLVS+L A + L     GK +H + +RN    ++ L
Sbjct: 326 NGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFL 385

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            +A++D Y +C ++     ++      +VV  +TMI GY   G  +EAV +F+ + + + 
Sbjct: 386 VSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLE-QG 444

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
             PN   + +VL AC+S++A+  G+ +HSY +   Y+      V +A+++MY KCG + +
Sbjct: 445 IRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRC--YVESALMDMYAKCGRLDL 502

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
           +  +F+ ++ KD+++W+++IS  A NG   +AL LF  M +  V   +VT  +++SAC+ 
Sbjct: 503 SHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACAS 562

Query: 325 GGLVDQGLILFKAMSTVY---EIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 381
              +  G    K +  V     I   +   + ++DMYG+ G LE A      MP + E S
Sbjct: 563 LPAIYYG----KEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVS 618

Query: 382 VWGALL 387
            W +++
Sbjct: 619 -WNSII 623



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 182/361 (50%), Gaps = 8/361 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +TF   +K+C+          +H      G   D+F+ ++L+  Y     ++ A Q+F
Sbjct: 145 DSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVF 204

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHK 125
           + +   D V W  ++ G  K G    A+++F  +     +PN  TL   LS  ++     
Sbjct: 205 DGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLF 264

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G  +H  +++   E+ + + N ++  Y +C  L     LF  MP+ ++V+W  MI G  
Sbjct: 265 FGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCV 324

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + GF  +A+ +F +M+K+    P+  TLV++L A + ++  + GK +H YI  R  + + 
Sbjct: 325 QNGFVDQALLLFCDMQKSG-IRPDSVTLVSLLPALTDLNGFNQGKELHGYI-VRNCVHMD 382

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             + +A++++Y KC  V +A  V++     D +  ST+ISG  +NG  ++A+++F  ++ 
Sbjct: 383 VFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLE 442

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFK-AMSTVYEIVPQMQHYACVVDMYGRAGLL 364
             + P+ V   +++ AC+    +  G  L   A+   YE    ++  + ++DMY + G L
Sbjct: 443 QGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVE--SALMDMYAKCGRL 500

Query: 365 E 365
           +
Sbjct: 501 D 501



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 160/325 (49%), Gaps = 13/325 (4%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYG-HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV---V 72
           L+ C         L++H   +  G H  D  +Q  L+  YV  +    A  +F+S+    
Sbjct: 46  LRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGA 105

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNA-----NTLVSVLSACSSLVSHKLG 127
               + W  +I GL+  G ++ A+  +  +   P+A     +T   V+ +C++L +  LG
Sbjct: 106 AACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALG 165

Query: 128 KAIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           + +H  + R L  + ++ + +A++  Y   G L     +F  M +R+ V W  M+ GY +
Sbjct: 166 RLVH-RTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVK 224

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
            G    AV +F +M +    EPN ATL   LS  ++ S L FG  +H+ ++ +Y L    
Sbjct: 225 AGSVSSAVELFGDM-RASGCEPNFATLACFLSVSATESDLFFGVQLHT-LAVKYGLESEV 282

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            V N +++MY KC  +    ++F ++   D ++W+ +ISG   NG   QAL LF  M  +
Sbjct: 283 AVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKS 342

Query: 307 AVFPDDVTFIALISACSHGGLVDQG 331
            + PD VT ++L+ A +     +QG
Sbjct: 343 GIRPDSVTLVSLLPALTDLNGFNQG 367



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 146/280 (52%), Gaps = 5/280 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N       L AC+     +   E+H++ ++  +    +++++L+  Y     +  +H IF
Sbjct: 448 NAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIF 507

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHK 125
           + +   D V+W ++IS  ++ G  +EA+++F   C   VK +  T+ SVLSAC+SL +  
Sbjct: 508 SKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIY 567

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK IH   ++     ++  ++A++D Y +CG+L     +F  MP++N VSW ++I  Y 
Sbjct: 568 YGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYG 627

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G  KE+VS+ + M++ +  + +  T + ++SAC+    +  G  +   ++  Y ++  
Sbjct: 628 AYGLVKESVSLLRHMQE-EGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPR 686

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DKISWSTVI 284
                 ++++Y + G +  A+++   + +K D   W  ++
Sbjct: 687 MEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALL 726



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 13/183 (7%)

Query: 8   YNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           Y++ T +  L AC+         EIH  VI+     D+F +++L+  Y    ++  AH++
Sbjct: 548 YSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRV 607

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSH 124
           F S+   + VSW +II+     G  KE++ +   +     K +  T ++++SAC+     
Sbjct: 608 FESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQV 667

Query: 125 KLGKAIHAHSLRNLNENNIILDN-----AILDFYIRCGSLASCGYLFVKMP-KRNVVSWT 178
           + G  +     R + E   I         ++D Y R G L     L V MP K +   W 
Sbjct: 668 QEGLRL----FRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWG 723

Query: 179 TMI 181
            ++
Sbjct: 724 ALL 726



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 93/220 (42%), Gaps = 11/220 (5%)

Query: 213 LVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 272
           L+ VL  C S S LS G  VH    T    +    +   ++ MYV       A+ VF+ L
Sbjct: 42  LLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSL 101

Query: 273 ---AYKDKISWSTVISGLAMNGCGRQALQLFSLMII--NAVFPDDVTFIALISACSHGGL 327
              A    + W+ +I GL M G  R AL  +  M    +A  PD  TF  ++ +C+  G 
Sbjct: 102 PRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGA 161

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           +  G ++ +   T+  +   M   + ++ MY   GLL +A      M  E +  +W  ++
Sbjct: 162 IALGRLVHRTARTL-GLDGDMFVGSALIKMYANGGLLWDARQVFDGM-AERDCVLWNVMM 219

Query: 388 N----ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           +    A  +    E+F  +R         ++  F  +S T
Sbjct: 220 DGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSAT 259


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  297 bits (761), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 147/415 (35%), Positives = 249/415 (60%), Gaps = 4/415 (0%)

Query: 49  NSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VK 105
           N+LL  Y    D+ SA  +F  +    VVS+T++I+G ++ G   EA+ +F  ++   + 
Sbjct: 184 NTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGIS 243

Query: 106 PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYL 165
           P+  T+ +VL+ C+       GK +H     N    +I + NA++D Y +CGS+     +
Sbjct: 244 PDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELV 303

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
           F +M  ++++SW T+IGGY++  +  EA+S+F  + + K   P+E T+  VL AC+S+SA
Sbjct: 304 FSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSA 363

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285
              G+ +H YI  R        V N++++MY KCG + +A  +F+ +A KD +SW+ +I+
Sbjct: 364 FDKGREIHGYI-MRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIA 422

Query: 286 GLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 345
           G  M+G G++A+ LF+ M    +  D+++F++L+ ACSH GLVD+G   F  M    +I 
Sbjct: 423 GYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIE 482

Query: 346 PQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQD 405
           P ++HYAC+VDM  R G L +A  FI  MPI  + ++WGALL  CRIH + ++ +++ + 
Sbjct: 483 PTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEK 542

Query: 406 LVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +   +  + G + LM+N +A A++WE   ++R  I + GL+K  GCSWIE+   +
Sbjct: 543 VFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRV 597



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 122/372 (32%), Positives = 195/372 (52%), Gaps = 15/372 (4%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+S     + YTF+   K+ S         ++H  +++ G      + NSL+ FY+  + 
Sbjct: 35  MMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQR 94

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVL 115
           + SA ++F+ +   DV+SW +II+G    G  ++ + +F      GI++  +  T+VSV 
Sbjct: 95  VDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEI--DLATIVSVF 152

Query: 116 SACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVV 175
           + C+      LG+A+H+  ++          N +LD Y +CG L S   +F +M  R+VV
Sbjct: 153 AGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVV 212

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           S+T+MI GYA  G   EAV +F+EME+ +   P+  T+  VL+ C+    L  GK VH +
Sbjct: 213 SYTSMIAGYAREGLAGEAVKLFEEMEE-EGISPDVYTVTAVLNCCARYRLLDEGKRVHEW 271

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
           I    DL     V NA+++MY KCG +  A  VF+ +  KD ISW+T+I G + N    +
Sbjct: 272 IKEN-DLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANE 330

Query: 296 ALQLFSLMIINAVF-PDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQMQHYA- 352
           AL LF+L++    F PD+ T   ++ AC+     D+G  I    M   Y      +H A 
Sbjct: 331 ALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGY---FSDRHVAN 387

Query: 353 CVVDMYGRAGLL 364
            +VDMY + G L
Sbjct: 388 SLVDMYAKCGAL 399



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 143/283 (50%), Gaps = 10/283 (3%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           YT T  L  C+      +   +H  + E     DIF+ N+L+  Y     +  A  +F+ 
Sbjct: 247 YTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSE 306

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKL 126
           +   D++SW TII G SK  +  EA+ +F  +       P+  T+  VL AC+SL +   
Sbjct: 307 MRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDK 366

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           G+ IH + +RN   ++  + N+++D Y +CG+L     LF  +  +++VSWT MI GY  
Sbjct: 367 GREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGM 426

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
            GF KEA+++F +M +    E +E + V++L ACS    +  G    + +  R++  +  
Sbjct: 427 HGFGKEAIALFNQMRQAG-IEADEISFVSLLYACSHSGLVDEGWRFFNIM--RHECKIEP 483

Query: 247 LVGN--AVINMYVKCGDVGIAIQ-VFNMLAYKDKISWSTVISG 286
            V +   +++M  + GD+  A + + NM    D   W  ++ G
Sbjct: 484 TVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCG 526



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 166/317 (52%), Gaps = 14/317 (4%)

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSH 124
           F+ V     + W  +++ L+K G    +I +F  +    V+ ++ T   V  + SSL S 
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 125 KLGKAIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
             G+ +H   L++   E N +  N+++ FY++   + S   +F +M +R+V+SW ++I G
Sbjct: 61  HGGEQLHGFILKSGFGERNSV-GNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIING 119

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           Y   G  ++ +SVF +M      E + AT+V+V + C+    +S G+ VHS I  +   S
Sbjct: 120 YVSNGLAEKGLSVFVQM-LVSGIEIDLATIVSVFAGCADSRLISLGRAVHS-IGVKACFS 177

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
             +   N +++MY KCGD+  A  VF  ++ +  +S++++I+G A  G   +A++LF  M
Sbjct: 178 REDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEM 237

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLIL---FKAMSTVYEIVPQMQHYACVVDMYGR 360
               + PD  T  A+++ C+   L+D+G  +    K     ++I         ++DMY +
Sbjct: 238 EEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVS----NALMDMYAK 293

Query: 361 AGLLEEAEAFIREMPIE 377
            G ++EAE    EM ++
Sbjct: 294 CGSMQEAELVFSEMRVK 310


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  297 bits (761), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 157/434 (36%), Positives = 255/434 (58%), Gaps = 7/434 (1%)

Query: 32  IHAHVIEYGHLHDIFIQNS--LLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
           +HA+VI   +   + +  +  LL  Y     +  A Q+FN +    VVSWT +I+G  + 
Sbjct: 217 MHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRS 276

Query: 90  GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
              +E   +F  +   ++ PN  T++S++  C    + +LGK +HA+ LRN    ++ L 
Sbjct: 277 NRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALA 336

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
            A++D Y +C  + +   LF     R+V+ WT M+  YA+     +A ++F +M +T   
Sbjct: 337 TALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQM-RTSGV 395

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
            P + T+V++LS C+   AL  GK+VHSYI  +  + V  ++  A+++MY KCGD+  A 
Sbjct: 396 RPTKVTIVSLLSLCAVAGALDLGKWVHSYID-KERVEVDCILNTALVDMYAKCGDINAAG 454

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
           ++F     +D   W+ +I+G AM+G G +AL +F+ M    V P+D+TFI L+ ACSH G
Sbjct: 455 RLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAG 514

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 386
           LV +G  LF+ M   + +VPQ++HY C+VD+ GRAGLL+EA   I+ MPI+    VWGAL
Sbjct: 515 LVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGAL 574

Query: 387 LNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446
           + ACR+H+N ++ +     L+  +  + G   LMSN +A A+RW D   +R  ++ +G+K
Sbjct: 575 VAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMK 634

Query: 447 KKTGCSWIEVNPSI 460
           K+ G S IEVN ++
Sbjct: 635 KEPGHSVIEVNGTV 648



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 116/382 (30%), Positives = 197/382 (51%), Gaps = 9/382 (2%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           LKAC      Q   EIH  V++ G   D+F+ N+L+  Y     +  A  +F+ ++  DV
Sbjct: 101 LKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDV 160

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAH 133
           VSW+T+I  LS+      A+++   ++   V+P+   +VS+++  +   + ++GKA+HA+
Sbjct: 161 VSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAY 220

Query: 134 SLRNLNENN--IILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
            +RN N  +  +    A+LD Y +CG L     LF  + ++ VVSWT MI G       +
Sbjct: 221 VIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLE 280

Query: 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNA 251
           E   +F  M++ +   PNE T+++++  C    AL  GK +H+YI  R   SVS  +  A
Sbjct: 281 EGTKLFIRMQE-ENIFPNEITMLSLIVECGFTGALQLGKQLHAYI-LRNGFSVSLALATA 338

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD 311
           +++MY KC D+  A  +F+    +D + W+ ++S  A   C  QA  LF  M  + V P 
Sbjct: 339 LVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPT 398

Query: 312 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFI 371
            VT ++L+S C+  G +D G  +   +      V  + + A +VDMY + G +  A    
Sbjct: 399 KVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTA-LVDMYAKCGDINAAGRLF 457

Query: 372 REMPIEAEWSVWGALLNACRIH 393
            E  I  +  +W A++    +H
Sbjct: 458 IE-AISRDICMWNAIITGFAMH 478



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 154/315 (48%), Gaps = 24/315 (7%)

Query: 113 SVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKR 172
           SVL AC  +   +LGK IH   L+   + ++ + NA++  Y  C  +     +F KM +R
Sbjct: 99  SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 158

Query: 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYV 232
           +VVSW+TMI   +       A+ + +EM    +  P+E  +V++++  +  + +  GK +
Sbjct: 159 DVVSWSTMIRSLSRNKEFDMALELIREM-NFMQVRPSEVAMVSMVNLFADTANMRMGKAM 217

Query: 233 HSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAM 289
           H+Y+   S    + V      A+++MY KCG +G+A Q+FN L  K  +SW+ +I+G   
Sbjct: 218 HAYVIRNSNNEHMGVPTTT--ALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIR 275

Query: 290 NGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG-----LILFKAMSTVYEI 344
           +    +  +LF  M    +FP+++T ++LI  C   G +  G      IL    S    +
Sbjct: 276 SNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLAL 335

Query: 345 VPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-----CRIHRNDEMF 399
                    +VDMYG+   +  A A   +     +  +W A+L+A     C I +   +F
Sbjct: 336 A------TALVDMYGKCSDIRNARALF-DSTQNRDVMIWTAMLSAYAQANC-IDQAFNLF 387

Query: 400 DRIRQDLVNKKGVSV 414
           D++R   V    V++
Sbjct: 388 DQMRTSGVRPTKVTI 402


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  297 bits (761), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 166/482 (34%), Positives = 260/482 (53%), Gaps = 57/482 (11%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHF-YVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
           ++HA  I+ G + D      ++ F   + +DI  A  +F  +  P+   W TI+  L++ 
Sbjct: 37  QLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRILAET 96

Query: 90  G---FHKEAIDMF----CGIDVKPNANTLVSVLSACSSLVSHKLGKAIH----------- 131
                  EA+ +F    C   VKPN  T  SVL AC+     + GK IH           
Sbjct: 97  NDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHED 156

Query: 132 -------------------AHSL-----------------RNLNENNIILDNAILDFYIR 155
                              A+SL                 +   + N++L N ++D  +R
Sbjct: 157 EFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVR 216

Query: 156 CGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVN 215
            G + S   LF +MP R+VVSW  MI GYA+ G   EA+++FQEM+ +   +PN  TLV+
Sbjct: 217 LGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSN-IDPNYVTLVS 275

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           VL A + I AL  GK++H Y + +  + + +++G+A+++MY KCG +  A+QVF  L  +
Sbjct: 276 VLPAIARIGALELGKWIHLY-AGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKR 334

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILF 335
           + I+WS +I   AM+G    A+  F LM    V P+DV +I ++SACSH GLV++G   F
Sbjct: 335 NAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFF 394

Query: 336 KAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN 395
             M  V  + P+++HY C+VD+ GRAG LEEAE  IR MPIE +  +W ALL AC++H+N
Sbjct: 395 SHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKN 454

Query: 396 DEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
            +M +R+ + L+       G++  +SN +A    WE   ++R +++ M ++K  GCSWIE
Sbjct: 455 LKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIE 514

Query: 456 VN 457
           ++
Sbjct: 515 IH 516



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 155/333 (46%), Gaps = 52/333 (15%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFY------------- 55
           N +TF   LKAC+ A   ++  +IH  ++++G   D F+ ++L+  Y             
Sbjct: 121 NRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLF 180

Query: 56  ----------------------------------VTVKDIFSAHQIFNSVVFPDVVSWTT 81
                                             V + DI SA  +F+ +    VVSW  
Sbjct: 181 CKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNV 240

Query: 82  IISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNL 138
           +ISG ++ G   EAI++F  +   ++ PN  TLVSVL A + + + +LGK IH ++ +N 
Sbjct: 241 MISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNK 300

Query: 139 NENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQ 198
            E + +L +A++D Y +CGS+     +F  +PKRN ++W+ +IG +A  G  ++A+  F 
Sbjct: 301 VEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFH 360

Query: 199 EMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVK 258
            M K     PN+   + +LSACS    +  G+   S++     L         ++++  +
Sbjct: 361 LMGKAG-VTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGR 419

Query: 259 CGDVGIAIQVF-NMLAYKDKISWSTVISGLAMN 290
            G +  A ++  NM    D + W  ++    M+
Sbjct: 420 AGHLEEAEELIRNMPIEPDDVIWKALLGACKMH 452


>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Vitis vinifera]
          Length = 732

 Score =  297 bits (761), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 153/455 (33%), Positives = 273/455 (60%), Gaps = 5/455 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +  TF   + A ++         +H H++  G   D  I+ SL+  Y+   ++ SA +IF
Sbjct: 246 DQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIF 305

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
             ++  DV+SWT +ISGL +      A+ +F  +    V P+  T+ SVL+AC+ L S  
Sbjct: 306 EGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFP 365

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG ++H + LR   + +I   N+++  Y +CG L     +F +M +R++VSW  ++ G+A
Sbjct: 366 LGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHA 425

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G   +A+ +F EM K ++  P+  T+V++L AC+SI AL  GK++H+++ T+  L   
Sbjct: 426 QNGHLCKALLLFNEMRKARQ-RPDSITVVSLLQACASIGALHQGKWIHNFV-TKSCLGPC 483

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
            L+  A+++MY KCGD+G A + F+ +  +D +SWS++I+G   +G G  AL+++S  + 
Sbjct: 484 ILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLH 543

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             + P+ V +++++SACSH GLVDQGL  F +M+  + I P+++H AC+VD+  RAG +E
Sbjct: 544 TGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVE 603

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EA +F + M  +    V G LL+ACR   N E+ D + +++V  K  + G +  +++++A
Sbjct: 604 EAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGDIVAREIVILKPANAGNYVQLAHSYA 663

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
              RW+   ++  +++ + LKK  G S+IE++ +I
Sbjct: 664 SMKRWDGVGEVWTQMKSLHLKKLPGWSFIELHGTI 698



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/381 (29%), Positives = 203/381 (53%), Gaps = 9/381 (2%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           +HA VI+YG   D+ + NS+L+ Y     +  A  +F  +   DV+SW +++SG ++ G 
Sbjct: 168 LHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGN 227

Query: 92  HKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148
            +E + +   +    ++P+  T  S++SA +      +GK +H H LR   E +  ++ +
Sbjct: 228 IREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETS 287

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
           ++  Y++CG++ S   +F  M  ++V+SWT MI G  +      AV+VF+ M K++   P
Sbjct: 288 LIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSR-VMP 346

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
           + AT+ +VL+AC+ + +   G  VH YI   R  L + +   N+++ MY KCG +  +  
Sbjct: 347 STATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPS--QNSLVTMYAKCGHLEQSCS 404

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           VF+ ++ +D +SW+ ++SG A NG   +AL LF+ M      PD +T ++L+ AC+  G 
Sbjct: 405 VFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGA 464

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           + QG  +   + T   + P +     +VDMY + G L  A+     MP + +   W +++
Sbjct: 465 LHQGKWIHNFV-TKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMP-QQDLVSWSSII 522

Query: 388 NACRIHRNDEMFDRIRQDLVN 408
                H   E   R+  D ++
Sbjct: 523 AGYGSHGKGETALRMYSDFLH 543



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 113/379 (29%), Positives = 198/379 (52%), Gaps = 13/379 (3%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           MLS  +  + +TF   +KAC+        L  H  VI  G+  D +I  SL++FY     
Sbjct: 39  MLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSKFGH 98

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
             SA ++F+++   +VV WTT+I   ++ G H  A  M+  +    ++P++ T++ +LS 
Sbjct: 99  NQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSG 158

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
              LV     + +HA  ++    +++ L N++L+ Y +CG +     LF  M  R+V+SW
Sbjct: 159 VLELVHL---QCLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISW 215

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
            +++ GYA+ G  +E + +   M KT   EP++ T  +++SA +  S L  GK VH +I 
Sbjct: 216 NSLVSGYAQLGNIREVLQLLIRM-KTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHI- 273

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            R  L   + +  ++I MY+KCG+V  A ++F  + +KD ISW+ +ISGL  N C   A+
Sbjct: 274 LRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAV 333

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL--FKAMSTVYEIVPQMQHYACVV 355
            +F  M+ + V P   T  ++++AC+  G    G  +  +     +   +P       +V
Sbjct: 334 TVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQN---SLV 390

Query: 356 DMYGRAGLLEEAEAFIREM 374
            MY + G LE++ +    M
Sbjct: 391 TMYAKCGHLEQSCSVFDRM 409



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 134/257 (52%), Gaps = 8/257 (3%)

Query: 70  SVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKL 126
           S + P   S+  II+ LS  G   + +  +  +   D  P+A+T  S++ AC+SL     
Sbjct: 7   SFLNPATKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSH 66

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           G + H   + +   ++  +  ++++FY + G   S   +F  M  RNVV WTTMIG Y  
Sbjct: 67  GLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTR 126

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
            G    A S++  M + +  +P+  T++ +LS    +  L   + +H+ +  +Y      
Sbjct: 127 AGEHDVAFSMYNIMRR-QGIQPSSVTMLGLLSGVLELVHL---QCLHACV-IQYGFGSDV 181

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            + N+++N+Y KCG V  A  +F ++  +D ISW++++SG A  G  R+ LQL   M  +
Sbjct: 182 ALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTD 241

Query: 307 AVFPDDVTFIALISACS 323
            + PD  TF +L+SA +
Sbjct: 242 GIEPDQQTFGSLVSAAA 258


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  297 bits (761), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 160/436 (36%), Positives = 252/436 (57%), Gaps = 8/436 (1%)

Query: 26  HQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISG 85
           H KAL  H + +     + + +   LL  Y   + +  A +IF+ +   + VSW+ +I G
Sbjct: 228 HGKAL--HGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGG 285

Query: 86  LSKCGFHKEAIDMFCGIDVK----PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNEN 141
                  KEA+++F  + +K    P   TL SVL AC+ L     G+ +H + ++     
Sbjct: 286 YVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVL 345

Query: 142 NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME 201
           +I+L N +L  Y +CG +      F  M  ++ VS++ ++ G  + G    A+S+F+ M+
Sbjct: 346 DILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQ 405

Query: 202 KTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGD 261
            +   +P+  T++ VL ACS ++AL  G   H Y+  R   +   L+ NA+I+MY KCG 
Sbjct: 406 LSG-IDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVR-GFATDTLICNALIDMYSKCGK 463

Query: 262 VGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISA 321
           +  A +VFN +   D +SW+ +I G  ++G G +AL LF  ++   + PDD+TFI L+S+
Sbjct: 464 ISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSS 523

Query: 322 CSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 381
           CSH GLV +G + F AMS  + IVP+M+H  C+VD+ GRAGL++EA  FIR MP E +  
Sbjct: 524 CSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVR 583

Query: 382 VWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIR 441
           +W ALL+ACRIH+N E+ + + + + +    S G F L+SN ++ A RW+D   IR   +
Sbjct: 584 IWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQK 643

Query: 442 RMGLKKKTGCSWIEVN 457
             GLKK  GCSWIE+N
Sbjct: 644 DWGLKKIPGCSWIEIN 659



 Score =  204 bits (519), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 123/401 (30%), Positives = 203/401 (50%), Gaps = 16/401 (3%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML      N YT+   LKACS     +  +EIH+H   +G   D+F+  +L+ FY     
Sbjct: 100 MLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGI 159

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           +  A ++F+S+   DVV+W  +I+G S  G   +A+ +   +    + PN++T+V VL  
Sbjct: 160 LVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPT 219

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
                +   GKA+H + +R   +N +++   +LD Y +C  L     +F  M  RN VSW
Sbjct: 220 VGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSW 279

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
           + MIGGY      KEA+ +F +M      +P   TL +VL AC+ ++ LS G+ +H YI 
Sbjct: 280 SAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYI- 338

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            +    +  L+GN +++MY KCG +  AI+ F+ +  KD +S+S ++SG   NG    AL
Sbjct: 339 IKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVAL 398

Query: 298 QLFSLMIINAVFPDDVTFIALISACSH-----GGLVDQGLILFKAMSTVYEIVPQMQHYA 352
            +F +M ++ + PD  T + ++ ACSH      G    G ++ +  +T   I   +    
Sbjct: 399 SIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNAL---- 454

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
             +DMY + G +  A      M    +   W A++    IH
Sbjct: 455 --IDMYSKCGKISFAREVFNRMD-RHDIVSWNAMIIGYGIH 492



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/368 (29%), Positives = 193/368 (52%), Gaps = 9/368 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
            +   L+AC  +    +A +IH H ++     D  + + L   Y++   +  A ++F+ +
Sbjct: 10  NYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEI 69

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGK 128
             P V+ W  II   +  G    AID++     + V+PN  T   VL ACS L++ + G 
Sbjct: 70  PNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGV 129

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IH+H+     E+++ +  A++DFY +CG L     LF  M  R+VV+W  MI G +  G
Sbjct: 130 EIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYG 189

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR-YDLSVSNL 247
            C +AV +  +M++     PN +T+V VL       AL  GK +H Y   R +D  V  +
Sbjct: 190 LCDDAVQLIMQMQEEGIC-PNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGV--V 246

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII-N 306
           VG  +++MY KC  +  A ++F+++  ++++SWS +I G   + C ++AL+LF  MI+ +
Sbjct: 247 VGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKD 306

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
           A+ P  VT  +++ AC+    + +G  L   +  +  ++  +     ++ MY + G++++
Sbjct: 307 AMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNT-LLSMYAKCGVIDD 365

Query: 367 AEAFIREM 374
           A  F   M
Sbjct: 366 AIRFFDXM 373



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 147/317 (46%), Gaps = 17/317 (5%)

Query: 109 NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168
           N  + +L AC    S    K IH H L+N +  +  + + +   Y+ C  +     LF +
Sbjct: 9   NNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDE 68

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           +P  +V+ W  +I  YA  G    A+ ++  M       PN+ T   VL ACS + A+  
Sbjct: 69  IPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLG-VRPNKYTYPFVLKACSGLLAIED 127

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
           G  +HS+ +  + L     V  A+++ Y KCG +  A ++F+ ++++D ++W+ +I+G +
Sbjct: 128 GVEIHSH-AKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCS 186

Query: 289 MNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQM 348
           + G    A+QL   M    + P+  T + ++        +  G    KA+   Y +    
Sbjct: 187 LYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHG----KALHG-YCVRRSF 241

Query: 349 QHYACV----VDMYGRAGLLEEAEAFIREMPI--EAEWS--VWGALLNACRIHRNDEMFD 400
            +   V    +DMY +   L  A      M +  E  WS  + G + + C +    E+FD
Sbjct: 242 DNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDC-MKEALELFD 300

Query: 401 R-IRQDLVNKKGVSVGT 416
           + I +D ++   V++G+
Sbjct: 301 QMILKDAMDPTPVTLGS 317



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 3/111 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L ACS     Q     H ++I  G   D  I N+L+  Y     I  A ++FN +
Sbjct: 415 TMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRM 474

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACS 119
              D+VSW  +I G    G   EA+ +F     + +KP+  T + +LS+CS
Sbjct: 475 DRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCS 525


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  297 bits (761), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 163/445 (36%), Positives = 258/445 (57%), Gaps = 20/445 (4%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYV--TVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           +IHA ++  G   D F  + L+          +  A Q+F+ +  P++ +W T+I   + 
Sbjct: 53  QIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYAS 112

Query: 89  CGFHKEAIDMFCGIDVK----PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
                +++ +F  +  +    P+  T   ++ A S L     GKA H   ++ L  +++ 
Sbjct: 113 SSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVF 172

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           + N+++ FY +CG L     +FV  P+R+VVSW +MI  + + G  +EA+ +FQEME T+
Sbjct: 173 ILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEME-TQ 231

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
             +PN  T+V VLSAC+  S   FG++VHSYI  R  +  S  + NA+++MY KCG V  
Sbjct: 232 NVKPNGITMVGVLSACAKKSDFEFGRWVHSYIE-RNRIXESLTLSNAMLDMYTKCGSVED 290

Query: 265 AIQVFNMLAYKDKISWSTVI------------SGLAMNGCGRQALQLFSLMIINAVFPDD 312
           A ++F+ +  KD +SW+T++             GLAM+G G+ A+ LFS M  + V P+ 
Sbjct: 291 AKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNA 350

Query: 313 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIR 372
           VTF  ++ ACSH GLV++G   F  M  VY ++P ++HYAC+VD+ GRAGLLEEA   I 
Sbjct: 351 VTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIE 410

Query: 373 EMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWED 432
           +MP+    SVWGALL AC IH N  + ++    L+  +  + G + L+SN +A A +W+ 
Sbjct: 411 KMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDR 470

Query: 433 TNKIRDEIRRMGLKKKTGCSWIEVN 457
            + +R  +R +GLKK+ GCS IEV+
Sbjct: 471 VSGLRKLMRDVGLKKEPGCSSIEVD 495



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 82/199 (41%), Gaps = 31/199 (15%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L AC+     +    +H+++        + + N++L  Y     +  A ++F
Sbjct: 236 NGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLF 295

Query: 69  NSVVFPDVVSWTTIISGLSKCGFH------------KEAIDMFCGID---VKPNANTLVS 113
           + +   D+VSWTT++ G +K G +            K+AI +F  +    VKPNA T  +
Sbjct: 296 DKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTN 355

Query: 114 VLSACSSLVSHKLGKAIHAHSLRNLNENNIILD--------NAILDFYIRCGSLASCGYL 165
           +L ACS +   + G+          N+  ++            ++D   R G L     L
Sbjct: 356 ILCACSHVGLVEEGRTF-------FNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVEL 408

Query: 166 FVKMPKRNVVS-WTTMIGG 183
             KMP     S W  ++G 
Sbjct: 409 IEKMPMAPAASVWGALLGA 427


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  297 bits (760), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 147/415 (35%), Positives = 249/415 (60%), Gaps = 4/415 (0%)

Query: 49  NSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VK 105
           N+LL  Y    D+ SA  +F  +    VVS+T++I+G ++ G   EA+ +F  ++   + 
Sbjct: 335 NTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGIS 394

Query: 106 PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYL 165
           P+  T+ +VL+ C+       GK +H     N    +I + NA++D Y +CGS+     +
Sbjct: 395 PDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELV 454

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
           F +M  ++++SW T+IGGY++  +  EA+S+F  + + K   P+E T+  VL AC+S+SA
Sbjct: 455 FSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSA 514

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285
              G+ +H YI  R        V N++++MY KCG + +A  +F+ +A KD +SW+ +I+
Sbjct: 515 FDKGREIHGYI-MRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIA 573

Query: 286 GLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 345
           G  M+G G++A+ LF+ M    +  D+++F++L+ ACSH GLVD+G   F  M    +I 
Sbjct: 574 GYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIE 633

Query: 346 PQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQD 405
           P ++HYAC+VDM  R G L +A  FI  MPI  + ++WGALL  CRIH + ++ +++ + 
Sbjct: 634 PTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEK 693

Query: 406 LVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +   +  + G + LM+N +A A++WE   ++R  I + GL+K  GCSWIE+   +
Sbjct: 694 VFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRV 748



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 122/372 (32%), Positives = 195/372 (52%), Gaps = 15/372 (4%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+S     + YTF+   K+ S         ++H  +++ G      + NSL+ FY+  + 
Sbjct: 186 MMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQR 245

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNANTLVSVL 115
           + SA ++F+ +   DV+SW +II+G    G  ++ + +F      GI++  +  T+VSV 
Sbjct: 246 VDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEI--DLATIVSVF 303

Query: 116 SACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVV 175
           + C+      LG+A+H+  ++          N +LD Y +CG L S   +F +M  R+VV
Sbjct: 304 AGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVV 363

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           S+T+MI GYA  G   EAV +F+EME+ +   P+  T+  VL+ C+    L  GK VH +
Sbjct: 364 SYTSMIAGYAREGLAGEAVKLFEEMEE-EGISPDVYTVTAVLNCCARYRLLDEGKRVHEW 422

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
           I    DL     V NA+++MY KCG +  A  VF+ +  KD ISW+T+I G + N    +
Sbjct: 423 IKEN-DLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANE 481

Query: 296 ALQLFSLMIINAVF-PDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQMQHYA- 352
           AL LF+L++    F PD+ T   ++ AC+     D+G  I    M   Y      +H A 
Sbjct: 482 ALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGY---FSDRHVAN 538

Query: 353 CVVDMYGRAGLL 364
            +VDMY + G L
Sbjct: 539 SLVDMYAKCGAL 550



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 143/283 (50%), Gaps = 10/283 (3%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           YT T  L  C+      +   +H  + E     DIF+ N+L+  Y     +  A  +F+ 
Sbjct: 398 YTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSE 457

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKL 126
           +   D++SW TII G SK  +  EA+ +F  +       P+  T+  VL AC+SL +   
Sbjct: 458 MRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDK 517

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           G+ IH + +RN   ++  + N+++D Y +CG+L     LF  +  +++VSWT MI GY  
Sbjct: 518 GREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGM 577

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
            GF KEA+++F +M +    E +E + V++L ACS    +  G    + +  R++  +  
Sbjct: 578 HGFGKEAIALFNQMRQAG-IEADEISFVSLLYACSHSGLVDEGWRFFNIM--RHECKIEP 634

Query: 247 LVGN--AVINMYVKCGDVGIAIQ-VFNMLAYKDKISWSTVISG 286
            V +   +++M  + GD+  A + + NM    D   W  ++ G
Sbjct: 635 TVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCG 677



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 162/358 (45%), Gaps = 27/358 (7%)

Query: 25  PH-QKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTII 83
           PH Q   EI + V    ++  IF + SL     TV D   +   F+      V    T +
Sbjct: 19  PHLQNQKEIRSGVRVRKYV--IFNRASLR----TVSDCVDSITTFDR----SVTDANTQL 68

Query: 84  SGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNE 140
               + G  + A+ + C     D+ P   TL SVL  C+   S K GK +       +  
Sbjct: 69  RRFCESGNLENAVKLLCVSGKWDIDPR--TLCSVLQLCADSKSLKDGKEVDNF----IRG 122

Query: 141 NNIILDNAILD----FYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSV 196
           N  ++D+ +       Y  CG L     +F ++     + W  ++   A+ G    ++ +
Sbjct: 123 NGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGL 182

Query: 197 FQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMY 256
           F++M  +   E +  T   V  + SS+ ++  G+ +H +I  +      N VGN+++  Y
Sbjct: 183 FKKM-MSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFI-LKSGFGERNSVGNSLVAFY 240

Query: 257 VKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFI 316
           +K   V  A +VF+ +  +D ISW+++I+G   NG   + L +F  M+++ +  D  T +
Sbjct: 241 LKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIV 300

Query: 317 ALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
           ++ + C+   L+  G  +  ++        + +    ++DMY + G L+ A+A  REM
Sbjct: 301 SVFAGCADSRLISLGRAV-HSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREM 357


>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score =  297 bits (760), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 153/455 (33%), Positives = 273/455 (60%), Gaps = 5/455 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +  TF   + A ++         +H H++  G   D  I+ SL+  Y+   ++ SA +IF
Sbjct: 246 DQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIF 305

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
             ++  DV+SWT +ISGL +      A+ +F  +    V P+  T+ SVL+AC+ L S  
Sbjct: 306 EGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFP 365

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG ++H + LR   + +I   N+++  Y +CG L     +F +M +R++VSW  ++ G+A
Sbjct: 366 LGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHA 425

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G   +A+ +F EM K ++  P+  T+V++L AC+SI AL  GK++H+++ T+  L   
Sbjct: 426 QNGHLCKALLLFNEMRKARQ-RPDSITVVSLLQACASIGALHQGKWIHNFV-TKSCLGPC 483

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
            L+  A+++MY KCGD+G A + F+ +  +D +SWS++I+G   +G G  AL+++S  + 
Sbjct: 484 ILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLH 543

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             + P+ V +++++SACSH GLVDQGL  F +M+  + I P+++H AC+VD+  RAG +E
Sbjct: 544 TGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVE 603

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EA +F + M  +    V G LL+ACR   N E+ D + +++V  K  + G +  +++++A
Sbjct: 604 EAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGDIVAREIVILKPANAGNYVQLAHSYA 663

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
              RW+   ++  +++ + LKK  G S+IE++ +I
Sbjct: 664 SMKRWDGVGEVWTQMKSLHLKKLPGWSFIELHGTI 698



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/380 (29%), Positives = 202/380 (53%), Gaps = 7/380 (1%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           +HA VI+YG   D+ + NS+L+ Y     +  A  +F  +   DV+SW +++SG ++ G 
Sbjct: 168 LHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGN 227

Query: 92  HKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148
            +E + +   +    ++P+  T  S++SA +      +GK +H H LR   E +  ++ +
Sbjct: 228 IREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETS 287

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
           ++  Y++CG++ S   +F  M  ++V+SWT MI G  +      AV+VF+ M K++   P
Sbjct: 288 LIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSR-VMP 346

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           + AT+ +VL+AC+ + +   G  VH YI  R  + +     N+++ MY KCG +  +  V
Sbjct: 347 STATIASVLAACAELGSFPLGTSVHGYI-LRQRIKLDIPSQNSLVTMYAKCGHLEQSCSV 405

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F+ ++ +D +SW+ ++SG A NG   +AL LF+ M      PD +T ++L+ AC+  G +
Sbjct: 406 FDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGAL 465

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
            QG  +   + T   + P +     +VDMY + G L  A+     MP + +   W +++ 
Sbjct: 466 HQGKWIHNFV-TKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMP-QQDLVSWSSIIA 523

Query: 389 ACRIHRNDEMFDRIRQDLVN 408
               H   E   R+  D ++
Sbjct: 524 GYGSHGKGETALRMYSDFLH 543



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/372 (30%), Positives = 196/372 (52%), Gaps = 13/372 (3%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           MLS  +  + +TF   +KAC+        L  H  VI  G+  D +I  SL++FY     
Sbjct: 39  MLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSKFGH 98

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
             SA ++F+++   +VV WTT+I   ++ G H  A  M+  +    ++P++ T++ +LS 
Sbjct: 99  NQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSG 158

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
              LV     + +HA  ++    +++ L N++L+ Y +CG +     LF  M  R+V+SW
Sbjct: 159 VLELVHL---QCLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISW 215

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
            +++ GYA+ G  +E + +   M KT   EP++ T  +++SA +  S L  GK VH +I 
Sbjct: 216 NSLVSGYAQLGNIREVLQLLIRM-KTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHI- 273

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            R  L   + +  ++I MY+KCG+V  A ++F  + +KD ISW+ +ISGL  N C   A+
Sbjct: 274 LRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAV 333

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL--FKAMSTVYEIVPQMQHYACVV 355
            +F  M+ + V P   T  ++++AC+  G    G  +  +     +   +P       +V
Sbjct: 334 TVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQN---SLV 390

Query: 356 DMYGRAGLLEEA 367
            MY + G LE++
Sbjct: 391 TMYAKCGHLEQS 402



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 134/257 (52%), Gaps = 8/257 (3%)

Query: 70  SVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKL 126
           S + P   S+  II+ LS  G   + +  +  +   D  P+A+T  S++ AC+SL     
Sbjct: 7   SFLNPATKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSH 66

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           G + H   + +   ++  +  ++++FY + G   S   +F  M  RNVV WTTMIG Y  
Sbjct: 67  GLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTR 126

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
            G    A S++  M + +  +P+  T++ +LS    +  L   + +H+ +  +Y      
Sbjct: 127 AGEHDVAFSMYNIMRR-QGIQPSSVTMLGLLSGVLELVHL---QCLHACV-IQYGFGSDV 181

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            + N+++N+Y KCG V  A  +F ++  +D ISW++++SG A  G  R+ LQL   M  +
Sbjct: 182 ALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTD 241

Query: 307 AVFPDDVTFIALISACS 323
            + PD  TF +L+SA +
Sbjct: 242 GIEPDQQTFGSLVSAAA 258


>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 616

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 176/495 (35%), Positives = 273/495 (55%), Gaps = 36/495 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+    S N +T    LKAC     + +A+ +H   I+ G    +F+QN+L+  YV    
Sbjct: 79  MICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGL 138

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           I  A ++F+ +    +VSW ++I G +  G  KEA  +F  +    ++P+  T V++LS 
Sbjct: 139 IHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLSV 198

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           CS      LG+ +H        + +II+ NA++D Y +CG+L S   +F +  ++NVVSW
Sbjct: 199 CSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSW 258

Query: 178 TTMIGGYAERGFCKEAVSVFQEME------------------------------KTKEAE 207
           T+MI  YA+ G  + A  +F +M                               +     
Sbjct: 259 TSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVV 318

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
           P+EATLV++L+ACS +  L  GK +H+YI S +    V+  + N++I+MY KCG V  A+
Sbjct: 319 PDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVT--LYNSLIDMYAKCGPVVTAL 376

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
            +F  +  K+ +SW+ +I  LA++GCG +A++LF  M  +   PD++T   L+SACSH G
Sbjct: 377 DIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSG 436

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 386
           LVD GL  F  M  +Y +  +++HYAC+VD+ GR GLL EA   I  MP++ +  VWGAL
Sbjct: 437 LVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGAL 496

Query: 387 LNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446
           L ACRIH N E+  +I + L+  +  S G + L+SN +  A RWED  KIR  +   G+K
Sbjct: 497 LGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIK 556

Query: 447 KKTGCSWIEVNPSIF 461
           K    S IE++  I+
Sbjct: 557 KGRAISSIEIDGCIY 571


>gi|147797709|emb|CAN61058.1| hypothetical protein VITISV_011618 [Vitis vinifera]
          Length = 529

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 158/454 (34%), Positives = 253/454 (55%), Gaps = 7/454 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YT    +KAC L     +  +IH  + + G   ++ IQ +LL  Y    +     QIF
Sbjct: 78  DTYTLVFVIKACGLRPVILEGEQIHGQIFKLGFEFEVIIQTALLSMYGLFDEDCGLQQIF 137

Query: 69  NSVVFPDVVSWTTIISGLS--KCGFHKEAI--DMFCGIDVKPNANTLVSVLSACSSLVSH 124
           + +   D+V W  +I+  +   C +    +  DM    +VKPN  T VS+LS CSSL + 
Sbjct: 138 DEMPQRDLVMWNALIAAYAHGNCPYKVREVSYDMVSS-NVKPNGVTAVSILSVCSSLRAL 196

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           + GKA+H +  +NL E ++ + NA++D Y +CGS+     +F  MP RNVVSWT++I GY
Sbjct: 197 REGKAVHGYVTKNLIEXDVFVHNALIDVYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGY 256

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           ++     EA+  F++ME  +   P+E T++ V+  CS + +   G+++  Y+     +  
Sbjct: 257 SDNNCPNEALGFFKQME-AENIRPDEITVLGVVCMCSKLRSFELGEWISQYVVKTGLVKE 315

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           S  + N +++M+ KCG++  A Q+F+ +  K  +SW+ +I GLAM G G  AL  F  M 
Sbjct: 316 SPAIANVLMDMHAKCGNIKRACQIFDGMEEKTIVSWTIMIQGLAMYGHGLSALVRFCQMQ 375

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
                PD + F++L+SACSH GLVD+G   F +M   Y I P M+HY C+VD+  RAGL+
Sbjct: 376 REGFKPDSLVFLSLLSACSHAGLVDEGWRCFSSMEADYHIXPWMEHYGCMVDILCRAGLV 435

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           +EA  F++ MPI+ +  VW  LL AC    N  + +++   L          + L+SN F
Sbjct: 436 DEAFKFVQNMPIKPDMIVWRTLLGACXXQGNISLANQVMNXLCELGPKKSEDYVLLSNLF 495

Query: 425 AGADRWEDTNKIRDEIRRMGL-KKKTGCSWIEVN 457
           A    W++  ++R E+   G+ K+  GCS+IE +
Sbjct: 496 ASNAEWDNVXEVRKEMGDRGVTKQDPGCSFIEAD 529



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/294 (30%), Positives = 151/294 (51%), Gaps = 8/294 (2%)

Query: 36  VIEYGHLHDIFIQNSLLHFY--VTVKDIFS-AHQIFNSVVFPDVVSWTTIISGLSKCGFH 92
           +I  GHLH+  + + L+  +  +T+    S A +I + +   D  +W TII G  +    
Sbjct: 1   MITNGHLHNPTLASKLVVSFASITLPGTTSVARRIADQIDGLDTYTWNTIIRGYLEGNDP 60

Query: 93  KEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAI 149
           +EAI ++  +    +K +  TLV V+ AC        G+ IH    +   E  +I+  A+
Sbjct: 61  EEAILIYNHVRKKGLKVDTYTLVFVIKACGLRPVILEGEQIHGQIFKLGFEFEVIIQTAL 120

Query: 150 LDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN 209
           L  Y           +F +MP+R++V W  +I  YA  G C   V        +   +PN
Sbjct: 121 LSMYGLFDEDCGLQQIFDEMPQRDLVMWNALIAAYA-HGNCPYKVREVSYDMVSSNVKPN 179

Query: 210 EATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF 269
             T V++LS CSS+ AL  GK VH Y+ T+  +     V NA+I++Y KCG +  A+QVF
Sbjct: 180 GVTAVSILSVCSSLRALREGKAVHGYV-TKNLIEXDVFVHNALIDVYSKCGSIRDAVQVF 238

Query: 270 NMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
            ++  ++ +SW+++I+G + N C  +AL  F  M    + PD++T + ++  CS
Sbjct: 239 QLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGVVCMCS 292



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 142/296 (47%), Gaps = 6/296 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+S     N  T    L  CS     ++   +H +V +     D+F+ N+L+  Y     
Sbjct: 171 MVSSNVKPNGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEXDVFVHNALIDVYSKCGS 230

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           I  A Q+F  +   +VVSWT++I+G S      EA+  F  ++   ++P+  T++ V+  
Sbjct: 231 IRDAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGVVCM 290

Query: 118 CSSLVSHKLGKAIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
           CS L S +LG+ I  + ++  L + +  + N ++D + +CG++     +F  M ++ +VS
Sbjct: 291 CSKLRSFELGEWISQYVVKTGLVKESPAIANVLMDMHAKCGNIKRACQIFDGMEEKTIVS 350

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           WT MI G A  G    A+  F +M++ +  +P+    +++LSACS    +  G    S +
Sbjct: 351 WTIMIQGLAMYGHGLSALVRFCQMQR-EGFKPDSLVFLSLLSACSHAGLVDEGWRCFSSM 409

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDKISWSTVISGLAMNG 291
              Y +         ++++  + G V  A + V NM    D I W T++      G
Sbjct: 410 EADYHIXPWMEHYGCMVDILCRAGLVDEAFKFVQNMPIKPDMIVWRTLLGACXXQG 465



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 107/218 (49%), Gaps = 6/218 (2%)

Query: 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYV 232
           +  +W T+I GY E    +EA+ ++  + K K  + +  TLV V+ AC     +  G+ +
Sbjct: 43  DTYTWNTIIRGYLEGNDPEEAILIYNHVRK-KGLKVDTYTLVFVIKACGLRPVILEGEQI 101

Query: 233 HSYISTRYDLSVSNLVGNAVINMY-VKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNG 291
           H  I  +       ++  A+++MY +   D G+  Q+F+ +  +D + W+ +I+  A   
Sbjct: 102 HGQI-FKLGFEFEVIIQTALLSMYGLFDEDCGLQ-QIFDEMPQRDLVMWNALIAAYAHGN 159

Query: 292 CGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY 351
           C  +  ++   M+ + V P+ VT ++++S CS    + +G  +   ++          H 
Sbjct: 160 CPYKVREVSYDMVSSNVKPNGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEXDVFVHN 219

Query: 352 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           A ++D+Y + G + +A    + MP+    S W +L+N 
Sbjct: 220 A-LIDVYSKCGSIRDAVQVFQLMPMRNVVS-WTSLING 255


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 162/493 (32%), Positives = 276/493 (55%), Gaps = 49/493 (9%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N Y+F  AL AC+        ++IH  + +  +  D+++ ++L+  Y   + + SA + F
Sbjct: 150 NEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAF 209

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLVS 123
           + +   ++VSW ++I+   + G   +A+++F     CGI+  P+  TL SV SAC+SL +
Sbjct: 210 DDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIE--PDEITLASVASACASLSA 267

Query: 124 HKLGKAIHAHSLR-NLNENNIILDNAILDFYIRCGSLASCGYLFVKMP------------ 170
            + G  IHA  ++ +   N+++L NA++D Y +C  +     +F +MP            
Sbjct: 268 IREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVS 327

Query: 171 -------------------KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEA 211
                              +RNVVSW  +I GY + G  +EAV +F  + K +   P   
Sbjct: 328 GYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLL-KRESIWPTHY 386

Query: 212 TLVNVLSACSSISALSFGKYVHSYI-------STRYDLSVSNLVGNAVINMYVKCGDVGI 264
           T  N+L+AC++++ L  G+  H++I        +  D  +   VGN++I+MY+KCG V  
Sbjct: 387 TFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDI--FVGNSLIDMYMKCGLVED 444

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
              VF  +  +D +SW+ +I G A NG G +AL++F  M+++   PD VT I ++SACSH
Sbjct: 445 GRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSH 504

Query: 325 GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 384
            GLV++G   F++M+  + +VP   HY C+VD+ GRAG L+EA   I+ MP+E +  VWG
Sbjct: 505 AGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWG 564

Query: 385 ALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444
           +LL AC++H N  +   + + L+    ++ G + L+SN +A   RW+D  ++R ++R+MG
Sbjct: 565 SLLAACKVHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMG 624

Query: 445 LKKKTGCSWIEVN 457
           + K+ GCSWI + 
Sbjct: 625 VIKQPGCSWISIQ 637



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 116/452 (25%), Positives = 200/452 (44%), Gaps = 86/452 (19%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFY---------------VT 57
           F + L  C  +    +A  +HA +I+     +IFIQN L+  Y               + 
Sbjct: 22  FAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQ 81

Query: 58  VKDIFS----------------AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG 101
            ++ FS                A  +F  +   D  SW  ++SG ++    +EA+     
Sbjct: 82  QRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVD 141

Query: 102 I---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGS 158
           +   D   N  +  S LSAC+ L+   +G  IH    ++    ++ + +A++D Y +C  
Sbjct: 142 MHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRV 201

Query: 159 LASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLS 218
           +AS    F  M  RN+VSW ++I  Y + G   +A+ VF  M      EP+E TL +V S
Sbjct: 202 VASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCG-IEPDEITLASVAS 260

Query: 219 ACSSISALSFGKYVHSYISTRYDLSVSNLV-GNAVINMYVKCGDVGIAIQVFNMLAYKD- 276
           AC+S+SA+  G  +H+ +  ++D   ++LV GNA+++MY KC  V  A  VF+ +  +D 
Sbjct: 261 ACASLSAIREGLQIHARV-MKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDV 319

Query: 277 ------------------------------KISWSTVISGLAMNGCGRQALQLFSLMIIN 306
                                          +SW+ +I+G   NG   +A++LF L+   
Sbjct: 320 VSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRE 379

Query: 307 AVFPDDVTFIALISAC-----------SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVV 355
           +++P   TF  L++AC           +H  ++  G   FK+       V        ++
Sbjct: 380 SIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGF-WFKSGEDSDIFVGN-----SLI 433

Query: 356 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           DMY + GL+E+       M +E +   W A++
Sbjct: 434 DMYMKCGLVEDGRLVFERM-LERDNVSWNAMI 464



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/417 (23%), Positives = 187/417 (44%), Gaps = 82/417 (19%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYG-HLHDIFIQNSLLHFYVTVK 59
           M++C    +  T      AC+     ++ L+IHA V+++  + +D+ + N+L+  Y   +
Sbjct: 243 MMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCR 302

Query: 60  DIFSAHQIFNSVVFPD-------------------------------VVSWTTIISGLSK 88
            +  A  +F+ +   D                               VVSW  +I+G ++
Sbjct: 303 RVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQ 362

Query: 89  CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSL------RNLN 139
            G ++EA+ +F  +    + P   T  ++L+AC++L   KLG+  H H L      ++  
Sbjct: 363 NGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGE 422

Query: 140 ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQE 199
           +++I + N+++D Y++CG +     +F +M +R+ VSW  MI GYA+ G+  EA+ +F+E
Sbjct: 423 DSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFRE 482

Query: 200 MEKTKEAEPNEATLVNVLSACSSISALSFGK-YVHSYISTRYDLSVSNLVGNAVINMYVK 258
           M  + E  P+  T++ VLSACS    +  G+ Y  S                    M ++
Sbjct: 483 MLVSGE-RPDHVTMIGVLSACSHAGLVEEGRCYFQS--------------------MTIE 521

Query: 259 CGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIAL 318
            G V +            K  ++ ++  L   GC  +A  L   M +    PD V + +L
Sbjct: 522 HGLVPV------------KDHYTCMVDLLGRAGCLDEANNLIQTMPME---PDAVVWGSL 566

Query: 319 ISACSHGGLVDQGLILFKAMSTVYEIVP-QMQHYACVVDMYGRAGLLEEAEAFIREM 374
           ++AC   G +  G  + + +    EI P     Y  + +MY   G  ++     ++M
Sbjct: 567 LAACKVHGNITLGKYVAERL---LEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQM 620



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 147/323 (45%), Gaps = 37/323 (11%)

Query: 86  LSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
           ++K G  ++ +     +D  P A     +L  C    S    + +HA  ++    + I +
Sbjct: 1   MAKHGLVRKVVGDLSFLDSSPFAK----LLDTCVKSKSVFEARLVHARIIKTQFSSEIFI 56

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            N ++D Y +CG L     +F  M +RN  SW  ++G   + G   EA+++F+ M +  +
Sbjct: 57  QNRLVDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQ 116

Query: 206 AE------------------------------PNEATLVNVLSACSSISALSFGKYVHSY 235
                                            NE +  + LSAC+ +  LS G  +H  
Sbjct: 117 CSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGL 176

Query: 236 IS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
           I+ +RY L V   +G+A+++MY KC  V  A + F+ +  ++ +SW+++I+    NG   
Sbjct: 177 IAKSRYSLDV--YMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAG 234

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
           +AL++F  M+   + PD++T  ++ SAC+    + +GL +   +    +    +     +
Sbjct: 235 KALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNAL 294

Query: 355 VDMYGRAGLLEEAEAFIREMPIE 377
           VDMY +   + EA      MP+ 
Sbjct: 295 VDMYAKCRRVNEARLVFDRMPLR 317


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 159/463 (34%), Positives = 271/463 (58%), Gaps = 11/463 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+S     +  TF+  L   S     ++  EIH ++I  G   D+F++++L+  Y   +D
Sbjct: 340 MISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRD 399

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           +  A +IF+     D+V  T +ISG    G +  A+++F  +    ++ N+ TL SVL A
Sbjct: 400 VEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPA 459

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C+ L +  LGK +H H L+N +  +  + +AI+D Y +CG L      F+ +  ++ V W
Sbjct: 460 CAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCW 519

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI- 236
            +MI   ++ G  +EA+ +F++M      + +  ++   LSAC+++ AL +GK +H+++ 
Sbjct: 520 NSMITSCSQNGKPEEAIDLFRQMGMAG-TKYDCVSISAALSACANLPALHYGKEIHAFMM 578

Query: 237 --STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
             + R DL       +A+I+MY KCG++ +A +VF+ +  K+++SW+++I+    +G  +
Sbjct: 579 RGAFRSDL----FAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLK 634

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
            +L LF  M+ + + PD VTF+A+ISAC H G VD+G+  F+ M+    I+ +M+HYAC+
Sbjct: 635 DSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACM 694

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414
           VD++GRAG L EA   I  MP   +  VWG LL ACR+H N E+ +   ++L +    + 
Sbjct: 695 VDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQNS 754

Query: 415 GTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           G + L+SN  A A +WE   KIR  ++  G++K  GCSWI+VN
Sbjct: 755 GYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCSWIDVN 797



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 119/414 (28%), Positives = 200/414 (48%), Gaps = 20/414 (4%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML C +  + YTF   +KAC   +       +H  +   G   D+F+ +SL+ FY     
Sbjct: 138 MLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGC 197

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           I  A  +F+ +   D V W  +++G  K G    A  +F  +   +  PN+ T   VLS 
Sbjct: 198 IHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSV 257

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C+S +    G  +H   + +  E +  + N +L  Y +CG L     LF  MPK ++V+W
Sbjct: 258 CASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTW 317

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
             MI GY + GF  EA  +F EM   +  +P+  T  + L   S  + L  GK +H YI 
Sbjct: 318 NGMISGYVQNGFMDEASCLFHEMISAR-MKPDSITFSSFLPLLSEGATLRQGKEIHCYI- 375

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            R  +S+   + +A+I++Y KC DV +A ++F+     D +  + +ISG  +NG    AL
Sbjct: 376 IRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNAL 435

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC---- 353
           ++F  ++   +  + VT  +++ AC+  GL    L L K +     I+      +C    
Sbjct: 436 EIFRWLLQERMRANSVTLASVLPACA--GLA--ALTLGKELHG--HILKNGHGGSCYVGS 489

Query: 354 -VVDMYGRAGLLEEA-EAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDRIRQ 404
            ++DMY + G L+ A + FI     +A    W +++ +C  + + +E  D  RQ
Sbjct: 490 AIMDMYAKCGRLDLAHQTFIGISDKDA--VCWNSMITSCSQNGKPEEAIDLFRQ 541



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 127/294 (43%), Gaps = 28/294 (9%)

Query: 108 ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFV 167
           A  LVS+L  C+       G+  HA  L N    N IL   +L  Y+ CG+      +F 
Sbjct: 46  APQLVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFY 105

Query: 168 KMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 227
           ++       W  MI G+   G    A+  + +M       P++ T   V+ AC  +++++
Sbjct: 106 QLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTL-PDKYTFPYVIKACGGLNSVA 164

Query: 228 FGKYVHSYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
            G+ VH  I    ++L V   VG+++I  Y + G +  A  +F+ +  KD + W+ +++G
Sbjct: 165 LGRVVHDKIQFMGFELDV--FVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNG 222

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS-----------HGGLVDQGLILF 335
              NG    A  +F  M      P+ VTF  ++S C+           HG +V  GL + 
Sbjct: 223 YVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMD 282

Query: 336 KAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
             ++              ++ MY + G L +A      MP + +   W  +++ 
Sbjct: 283 SPVANT------------LLAMYAKCGHLFDARRLFDMMP-KTDLVTWNGMISG 323


>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 609

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 163/456 (35%), Positives = 259/456 (56%), Gaps = 8/456 (1%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S N++TF     AC+     + A   H  V + G  +D    NS++  Y    +   A +
Sbjct: 114 SPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARK 173

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLV 122
           +F+ +   D+VSW +++SG +K GF +EA+++F  +      +P+  +LVSVL AC  L 
Sbjct: 174 VFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELG 233

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
             +LG+ +    +    + N  + +A++  Y +CG L S   +F  MP R+ ++W   I 
Sbjct: 234 DLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAIS 293

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
            YA+ G   EA+S+F  M K    +PN+ TL  VLSAC+SI AL  GK +  Y + R  L
Sbjct: 294 AYAQNGMADEAISLFHSM-KENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHR-GL 351

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
                V  A+I+MY KCG +  A +VFN +  K+  SW+ +IS LA +G  ++AL LF  
Sbjct: 352 QHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFER 411

Query: 303 MIIN--AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
           M     +  P+D+TF++L+SAC H GLVD+G  LF  MST++ +VP+++HY+C+VD+  R
Sbjct: 412 MSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSR 471

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           AG L EA   I +MP + +    GAL +AC+  +N ++ +R+ Q L+     + G + + 
Sbjct: 472 AGHLYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIIS 531

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           S  +   + W+D  ++R  +R  G+ K  GCSWIEV
Sbjct: 532 SKIYENLNMWDDAARMRALMRENGVTKTPGCSWIEV 567



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 201/388 (51%), Gaps = 27/388 (6%)

Query: 17  LKACSLAHPHQKALE-IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV-FP 74
           LK C    P  K L+ IH        +H I   N LL   +++KD   +  IF+ +   P
Sbjct: 28  LKQC----PSTKTLQQIHTQFT----IHSIHKPNHLLSQSISLKDFTYSTLIFSHITPHP 79

Query: 75  DVVSWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNANTLVSVLSACSSLVSHKLGKA 129
           +  ++  ++   +   +H   + +        +++ PN  T   V  AC++L   ++ + 
Sbjct: 80  NDYAFNIMLRATTTT-WHDYPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARL 138

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
            H    +   +N+    N+++  Y RCG       +F ++ ++++VSW +++ GYA+ GF
Sbjct: 139 AHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGF 198

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
            +EAV VF  + +    EP+E +LV+VL AC  +  L  G++V  ++  R  + V++ +G
Sbjct: 199 AREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVER-GMKVNSYIG 257

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
           +A+I+MY KCG++  + ++F+ +  +D I+W+  IS  A NG   +A+ LF  M  N V 
Sbjct: 258 SALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVD 317

Query: 310 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQH----YACVVDMYGRAGLLE 365
           P+ VT  A++SAC+  G +D G    K M   Y     +QH       ++DMY + G LE
Sbjct: 318 PNKVTLTAVLSACASIGALDLG----KQMDE-YATHRGLQHDIFVATALIDMYAKCGSLE 372

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIH 393
            A+    +MP + + S W A+++A   H
Sbjct: 373 SAQRVFNDMPRKNDAS-WNAMISALASH 399


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 162/457 (35%), Positives = 254/457 (55%), Gaps = 5/457 (1%)

Query: 8   YNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           Y+ YTF  ALKAC+ +       EIHA  ++ G     F+ N+L   Y     +     +
Sbjct: 215 YDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTL 274

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSH 124
           F  +   DVVSWTTII+ L + G  + A+  F  +   DV PN  T  +V+S C++L   
Sbjct: 275 FEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARI 334

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           + G+ +HA  L      ++ ++N+I+  Y +CG L S   +F +M +R++VSW+T+I GY
Sbjct: 335 EWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGY 394

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
            + G   EA  +   M + +  +P E  L +VLSAC +++ L  GK +H+Y+ +   L  
Sbjct: 395 XQGGHVSEAFELLSWM-RMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLS-IGLEH 452

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           + +V +A+INMY KCG +  A ++F+     D +SW+ +I+G A +G  R+ + LF  + 
Sbjct: 453 TAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIP 512

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
              + PD VTFI ++SACSH GLVD G   F AMS  Y+I P  +HY C++D+  RAG L
Sbjct: 513 RVGLRPDSVTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRL 572

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
            +AE  I  MP   +  VW  LL ACR+H + E   R  + ++  +    GT   ++N +
Sbjct: 573 SDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIY 632

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           A   +W +   IR  ++  G+ K+ G SWI+V   +F
Sbjct: 633 ASKGKWREAADIRKLMKSKGVIKEPGWSWIKVKDLVF 669



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 192/364 (52%), Gaps = 14/364 (3%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +  + A KAC L         +H + ++ G ++ +F+ ++LL  Y     IF   ++F+ 
Sbjct: 117 FILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHE 176

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLG 127
           +   +VVSWT II+GL + G++KEA+  F  +    V+ ++ T    L AC+   +   G
Sbjct: 177 MPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYG 236

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           + IHA +++   + +  + N +   Y +CG L     LF KM  R+VVSWTT+I    + 
Sbjct: 237 REIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQM 296

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G  + AV  F  M ++ +  PNE T   V+S C++++ + +G+ +H+ I     L+ S  
Sbjct: 297 GQEECAVQAFIRMRES-DVSPNEYTFAAVISGCANLARIEWGEQLHALI-LHLGLAASLS 354

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V N+++ MY KCG +  +  +F+ +  +D +SWST+I+G    G   +A +L S M +  
Sbjct: 355 VENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEG 414

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV----VDMYGRAGL 363
             P +    +++SAC +  +++ G  L       Y +   ++H A V    ++MY + G 
Sbjct: 415 PKPTEFALASVLSACGNMAILEHGKQLH-----AYVLSIGLEHTAMVLSALINMYCKCGS 469

Query: 364 LEEA 367
           +EEA
Sbjct: 470 IEEA 473



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 168/335 (50%), Gaps = 7/335 (2%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID 103
           D+   N  L   V    + +A ++F+ +   D +SWTT+ISG        EA+ +F  + 
Sbjct: 48  DLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMR 107

Query: 104 VKPNANTLVSVLS----ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSL 159
           V+        +LS    AC        G+ +H ++++    N++ + +A+LD Y + G +
Sbjct: 108 VESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKI 167

Query: 160 ASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
                +F +MP RNVVSWT +I G    G+ KEA+  F EM +++  E +  T    L A
Sbjct: 168 FEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSR-VEYDSYTFAIALKA 226

Query: 220 CSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS 279
           C+   AL++G+ +H+  + +    VS+ V N +  MY KCG +   + +F  ++ +D +S
Sbjct: 227 CADSGALNYGREIHAQ-AMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVS 285

Query: 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMS 339
           W+T+I+ L   G    A+Q F  M  + V P++ TF A+IS C++   ++ G  L  A+ 
Sbjct: 286 WTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQL-HALI 344

Query: 340 TVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
               +   +     ++ MY + G L  +     EM
Sbjct: 345 LHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEM 379



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 124/253 (49%), Gaps = 9/253 (3%)

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           L + IH  S  +L E+N  L        ++ G L +   +F KM +++ +SWTT+I GY 
Sbjct: 37  LSQNIHFISQTDLPESNKQLKE-----LVKTGHLGNARRMFDKMSQKDEISWTTLISGYV 91

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
                 EA+ +F+ M        +   L     AC   S +++G+ +H Y + +  L  S
Sbjct: 92  NANDSSEALLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGY-AVKTGLVNS 150

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             VG+A+++MY K G +    +VF+ +  ++ +SW+ +I+GL   G  ++AL  FS M  
Sbjct: 151 VFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWR 210

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
           + V  D  TF   + AC+  G ++ G  I  +AM   +++   + +   +  MY + G L
Sbjct: 211 SRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVAN--TLATMYNKCGKL 268

Query: 365 EEAEAFIREMPIE 377
           E       +M + 
Sbjct: 269 EYGLTLFEKMSMR 281


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 146/432 (33%), Positives = 253/432 (58%), Gaps = 12/432 (2%)

Query: 33  HAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFH 92
           +  V + G   D++ +     +Y+      S  ++F  +   D+VSW T+ISG ++ G H
Sbjct: 123 YKKVFDEGKTSDVYSKKEKESYYLG-----SLRKVFEMMPKRDIVSWNTVISGNAQNGMH 177

Query: 93  KEAIDM---FCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAI 149
           ++A+ M       D++P++ TL SVL   +  V+   GK IH +++RN  + ++ + +++
Sbjct: 178 EDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSL 237

Query: 150 LDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN 209
           +D Y +C  +     +F  +P+ + +SW ++I G  + G   E +  FQ+M   K  +PN
Sbjct: 238 IDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAK-IKPN 296

Query: 210 EATLVNVLSACSSISALSFGKYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
             +  +++ AC+ ++ L  GK +H YI  +R+D +V   + +A+++MY KCG++  A  +
Sbjct: 297 HVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNV--FIASALVDMYAKCGNIRTARWI 354

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F+ +   D +SW+ +I G A++G    A+ LF  M +  V P+ V F+A+++ACSH GLV
Sbjct: 355 FDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLV 414

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
           D+    F +M+  Y I+P ++HYA V D+ GR G LEEA  FI +M IE   SVW  LL 
Sbjct: 415 DEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLA 474

Query: 389 ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
           ACR+H+N E+ +++ + L      ++G + L+SN ++ A RW+D  K+R  +R  G+KKK
Sbjct: 475 ACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKK 534

Query: 449 TGCSWIEVNPSI 460
             CSWIE+   +
Sbjct: 535 PACSWIEIKNKV 546



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 113/197 (57%), Gaps = 4/197 (2%)

Query: 28  KALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS 87
           K  EIH + I  G+  D+FI +SL+  Y     +  + ++F  +   D +SW +II+G  
Sbjct: 214 KGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCV 273

Query: 88  KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
           + G   E +  F  +    +KPN  +  S++ AC+ L +  LGK +H + +R+  + N+ 
Sbjct: 274 QNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVF 333

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           + +A++D Y +CG++ +  ++F KM   ++VSWT MI GYA  G   +A+S+F+ ME  +
Sbjct: 334 IASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRME-VE 392

Query: 205 EAEPNEATLVNVLSACS 221
             +PN    + VL+ACS
Sbjct: 393 GVKPNYVAFMAVLTACS 409



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML      NH +F+  + AC+         ++H ++I      ++FI ++L+  Y    +
Sbjct: 288 MLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGN 347

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           I +A  IF+ +   D+VSWT +I G +  G   +AI +F  ++   VKPN    ++VL+A
Sbjct: 348 IRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTA 407

Query: 118 CS 119
           CS
Sbjct: 408 CS 409


>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 702

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 163/456 (35%), Positives = 259/456 (56%), Gaps = 8/456 (1%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S N++TF     AC+     + A   H  V + G  +D    NS++  Y    +   A +
Sbjct: 114 SPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARK 173

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLV 122
           +F+ +   D+VSW +++SG +K GF +EA+++F  +      +P+  +LVSVL AC  L 
Sbjct: 174 VFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELG 233

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
             +LG+ +    +    + N  + +A++  Y +CG L S   +F  MP R+ ++W   I 
Sbjct: 234 DLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAIS 293

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
            YA+ G   EA+S+F  M K    +PN+ TL  VLSAC+SI AL  GK +  Y + R  L
Sbjct: 294 AYAQNGMADEAISLFHSM-KENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHR-GL 351

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
                V  A+I+MY KCG +  A +VFN +  K+  SW+ +IS LA +G  ++AL LF  
Sbjct: 352 QHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFER 411

Query: 303 MIIN--AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
           M     +  P+D+TF++L+SAC H GLVD+G  LF  MST++ +VP+++HY+C+VD+  R
Sbjct: 412 MSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSR 471

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           AG L EA   I +MP + +    GAL +AC+  +N ++ +R+ Q L+     + G + + 
Sbjct: 472 AGHLYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIIS 531

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           S  +   + W+D  ++R  +R  G+ K  GCSWIEV
Sbjct: 532 SKIYENLNMWDDAARMRALMRENGVTKTPGCSWIEV 567



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 201/388 (51%), Gaps = 27/388 (6%)

Query: 17  LKACSLAHPHQKALE-IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV-FP 74
           LK C    P  K L+ IH        +H I   N LL   +++KD   +  IF+ +   P
Sbjct: 28  LKQC----PSTKTLQQIHTQFT----IHSIHKPNHLLSQSISLKDFTYSTLIFSHITPHP 79

Query: 75  DVVSWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNANTLVSVLSACSSLVSHKLGKA 129
           +  ++  ++   +   +H   + +        +++ PN  T   V  AC++L   ++ + 
Sbjct: 80  NDYAFNIMLRATTTT-WHDYPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARL 138

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
            H    +   +N+    N+++  Y RCG       +F ++ ++++VSW +++ GYA+ GF
Sbjct: 139 AHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGF 198

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
            +EAV VF  + +    EP+E +LV+VL AC  +  L  G++V  ++  R  + V++ +G
Sbjct: 199 AREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVER-GMKVNSYIG 257

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
           +A+I+MY KCG++  + ++F+ +  +D I+W+  IS  A NG   +A+ LF  M  N V 
Sbjct: 258 SALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVD 317

Query: 310 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQH----YACVVDMYGRAGLLE 365
           P+ VT  A++SAC+  G +D G    K M   Y     +QH       ++DMY + G LE
Sbjct: 318 PNKVTLTAVLSACASIGALDLG----KQMDE-YATHRGLQHDIFVATALIDMYAKCGSLE 372

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIH 393
            A+    +MP + + S W A+++A   H
Sbjct: 373 SAQRVFNDMPRKNDAS-WNAMISALASH 399


>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Glycine max]
          Length = 696

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 169/513 (32%), Positives = 272/513 (53%), Gaps = 74/513 (14%)

Query: 20  CSLAHPH--QKALEIHAHVI--------EYGHLHD-------IFIQ-----NSLLHFYVT 57
           C + H H  Q     H HV+        + G + D       +F++     N+++  Y  
Sbjct: 151 CRIVHCHALQMGFRNHLHVVNELVGMYGKLGRMEDARQLFDGMFVRSIVSWNTMVSGYAL 210

Query: 58  VKDIFSAHQIFNSVVF----PDVVSWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNA 108
            +D   A ++F  +      P+ V+WT+++S  ++CG + E +++F      GI++   A
Sbjct: 211 NRDSLGASRVFKRMELEGLQPNSVTWTSLLSSHARCGLYDETLELFKVMRTRGIEI--GA 268

Query: 109 NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168
             L  VLS C+ +     GK IH + ++   E+ + + NA++  Y +   +     +F++
Sbjct: 269 EALAVVLSVCADMAEVDWGKEIHGYVVKGGYEDYLFVKNALIGTYGKHQHMGDAHKVFLE 328

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE-----PNE------------- 210
           +  +N+VSW  +I  YAE G C EA + F  MEK+   +     PN              
Sbjct: 329 IKNKNLVSWNALISSYAESGLCDEAYAAFLHMEKSDSDDHSLVRPNVISWSAVISGFAYK 388

Query: 211 ----------------------ATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
                                  T+ +VLS C+ ++AL+ G+ +H Y + R  +S + LV
Sbjct: 389 GRGEKSLELFRQMQLAKVMANCVTISSVLSVCAELAALNLGRELHGY-AIRNMMSDNILV 447

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
           GN +INMY+KCGD      VF+ +  +D ISW+++I G  M+G G  AL+ F+ MI   +
Sbjct: 448 GNGLINMYMKCGDFKEGHLVFDNIEGRDLISWNSLIGGYGMHGLGENALRTFNEMIRARM 507

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD++TF+A++SACSH GLV  G  LF  M T + I P ++HYAC+VD+ GRAGLL+EA 
Sbjct: 508 KPDNITFVAILSACSHAGLVAAGRNLFDQMVTEFRIEPNVEHYACMVDLLGRAGLLKEAT 567

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
             +R MPIE    VWGALLN+CR++++ ++ +     ++  K    G+F L+SN +A   
Sbjct: 568 DIVRNMPIEPNEYVWGALLNSCRMYKDMDIVEETASQILTLKSKITGSFMLLSNIYAANG 627

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           RW+D+ ++R   R  GLKK  G SWIEV   ++
Sbjct: 628 RWDDSARVRVSARTKGLKKIPGQSWIEVRKKVY 660



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 167/375 (44%), Gaps = 50/375 (13%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           Y+F    + C      Q+A ++H+ ++        F+   L+  Y     +  A ++F++
Sbjct: 32  YSFHAFFQRC---FTLQQARQLHSQLVLTTAHRLPFLAARLIAVYARFAFLSHARKVFDA 88

Query: 71  VVFPDV---VSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSH 124
           +    +   + W +II      G+H+ A++++     +   P+  TL  V+ ACSSL S 
Sbjct: 89  IPLESLHHLLLWNSIIRANVSHGYHQHALELYVEMRKLGFLPDGFTLPLVIRACSSLGSS 148

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
            L + +H H+L+    N++ + N ++  Y + G +     LF  M  R++VSW TM+ GY
Sbjct: 149 YLCRIVHCHALQMGFRNHLHVVNELVGMYGKLGRMEDARQLFDGMFVRSIVSWNTMVSGY 208

Query: 185 AERGFCKEAVSVFQEME----------------------------------KTKEAEPNE 210
           A       A  VF+ ME                                  +T+  E   
Sbjct: 209 ALNRDSLGASRVFKRMELEGLQPNSVTWTSLLSSHARCGLYDETLELFKVMRTRGIEIGA 268

Query: 211 ATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN 270
             L  VLS C+ ++ + +GK +H Y+  +        V NA+I  Y K   +G A +VF 
Sbjct: 269 EALAVVLSVCADMAEVDWGKEIHGYV-VKGGYEDYLFVKNALIGTYGKHQHMGDAHKVFL 327

Query: 271 MLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII------NAVFPDDVTFIALISACSH 324
            +  K+ +SW+ +IS  A +G   +A   F  M        + V P+ +++ A+IS  ++
Sbjct: 328 EIKNKNLVSWNALISSYAESGLCDEAYAAFLHMEKSDSDDHSLVRPNVISWSAVISGFAY 387

Query: 325 GGLVDQGLILFKAMS 339
            G  ++ L LF+ M 
Sbjct: 388 KGRGEKSLELFRQMQ 402



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 102/198 (51%), Gaps = 11/198 (5%)

Query: 149 ILDFYIRCGSLASCGYLFVKMPKR---NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
           ++  Y R   L+    +F  +P     +++ W ++I      G+ + A+ ++ EM K   
Sbjct: 69  LIAVYARFAFLSHARKVFDAIPLESLHHLLLWNSIIRANVSHGYHQHALELYVEMRKLGF 128

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSY---ISTRYDLSVSNLVGNAVINMYVKCGDV 262
             P+  TL  V+ ACSS+ +    + VH +   +  R  L V N     ++ MY K G +
Sbjct: 129 L-PDGFTLPLVIRACSSLGSSYLCRIVHCHALQMGFRNHLHVVN----ELVGMYGKLGRM 183

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
             A Q+F+ +  +  +SW+T++SG A+N     A ++F  M +  + P+ VT+ +L+S+ 
Sbjct: 184 EDARQLFDGMFVRSIVSWNTMVSGYALNRDSLGASRVFKRMELEGLQPNSVTWTSLLSSH 243

Query: 323 SHGGLVDQGLILFKAMST 340
           +  GL D+ L LFK M T
Sbjct: 244 ARCGLYDETLELFKVMRT 261


>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 161/453 (35%), Positives = 261/453 (57%), Gaps = 6/453 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T T A+ +C+      +  EIH  ++  G   D F+  +L+  Y     +  A ++F  +
Sbjct: 209 TITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQM 268

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
               VV+W ++I+G    G     I +F  +    VKP   TL S L ACS       GK
Sbjct: 269 PNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGK 328

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H + +RN  + +I L+++++D Y +CG + S   +F  MPK   VSW  MI GY   G
Sbjct: 329 FVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEG 388

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
              +A+ +F EM K+   EP+  T  +VL+ACS ++AL  G+ +H+ I  R +L  + +V
Sbjct: 389 KLFDALRLFGEMSKSF-VEPDAITFTSVLAACSQLAALEKGREIHNLIVER-NLGNNEVV 446

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
             A+++MY KCG V  A  VF  L  +D +SW+++I+    +G   +AL+LF+ M+ + V
Sbjct: 447 MGALLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYGSHGRVYEALELFAEMLQSNV 506

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD VTF+A++SACSH GLVD GL  F  M  VY I+P+++HY+C++ + GRAG L EA 
Sbjct: 507 KPDRVTFLAILSACSHAGLVDDGLYHFNQMINVYGIIPRIEHYSCLITLLGRAGRLHEAY 566

Query: 369 AFIREMP-IEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
             ++  P I  ++ +   L +ACR+H+N ++   I ++L++K      T+ ++SN +A  
Sbjct: 567 EILQSNPEISDDFQLLSTLFSACRLHKNLDLGVEIAENLIDKDPDDSSTYIILSNMYASF 626

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            +W++   +R +++ +GLKK  GCSWIE+N  I
Sbjct: 627 GKWDEVRMVRSKMKDLGLKKNPGCSWIEINEKI 659



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 116/417 (27%), Positives = 210/417 (50%), Gaps = 21/417 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YT+   LKAC           IH  +++ G + DI + +SL+  Y    +   A ++F
Sbjct: 105 DSYTYPSVLKACGGLRRVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLF 164

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           + +   DV  W T+IS   + G  +EA+  F  +     +P++ T+ + +S+C+ L+   
Sbjct: 165 DEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLD 224

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ IH   + +    +  +  A++D Y +CG L     +F +MP + VV+W +MI GY 
Sbjct: 225 RGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYG 284

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
            +G     + +F+ M  ++  +P   TL + L ACS  + L  GK+VH YI  R  +   
Sbjct: 285 FKGDGISCIQLFKRM-YSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYI-IRNRIQPD 342

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             + ++++++Y KCG V  A  +F ++     +SW+ +ISG    G    AL+LF  M  
Sbjct: 343 IFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSK 402

Query: 306 NAVFPDDVTFIALISACSHGGLVDQG-----LILFKAMSTVYEIVPQMQHYACVVDMYGR 360
           + V PD +TF ++++ACS    +++G     LI+ + +    E+V        ++DMY +
Sbjct: 403 SFVEPDAITFTSVLAACSQLAALEKGREIHNLIVERNLGN-NEVV-----MGALLDMYAK 456

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNA----CRIHRNDEMFDRIRQDLVNKKGVS 413
            G +EEA    + +P E +   W +++ A     R++   E+F  + Q  V    V+
Sbjct: 457 CGAVEEAFGVFKCLP-ERDLVSWTSMITAYGSHGRVYEALELFAEMLQSNVKPDRVT 512



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 183/375 (48%), Gaps = 17/375 (4%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTT-IISGLSKCG 90
           +H  V+  G  +D+++  +L+  YV+      A  +F+ +  P  +S    +++G ++  
Sbjct: 25  LHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFDVIENPFEISLCNGLMAGYTRNC 84

Query: 91  FHKEAIDMF----CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
            + EA+ +F    C   +KP++ T  SVL AC  L    LG+ IH   ++     +I++ 
Sbjct: 85  MYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVVLGQMIHTCLVKEGLMVDIVVG 144

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           ++++  Y +C        LF +MP ++V  W T+I  Y + G  +EA+  F  M +    
Sbjct: 145 SSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFG-F 203

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
           EP+  T+   +S+C+ +  L  G+ +H  +       + + V  A+++MY KCG + +AI
Sbjct: 204 EPDSVTITTAISSCARLLDLDRGREIHKEL-VNSGFRMDSFVSAALVDMYGKCGQLEMAI 262

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
           +VF  +  K  ++W+++I+G    G G   +QLF  M    V P   T  + + ACS   
Sbjct: 263 EVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSA 322

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP--IEAEWSVW- 383
            + +G  +   +     I P +   + ++D+Y + G +E AE   + MP      W+V  
Sbjct: 323 QLLEGKFVHGYI-IRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMI 381

Query: 384 ------GALLNACRI 392
                 G L +A R+
Sbjct: 382 SGYVTEGKLFDALRL 396



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 138/289 (47%), Gaps = 14/289 (4%)

Query: 107 NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLF 166
           +A  L+ +L A  +  S K GK +H   +    +N++ +   ++  Y+ C        +F
Sbjct: 2   DARKLIPLLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVF 61

Query: 167 VKMPKRNVVSWTT-MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
             +     +S    ++ GY       EA+ +F ++      +P+  T  +VL AC  +  
Sbjct: 62  DVIENPFEISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRR 121

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285
           +  G+ +H+ +  +  L V  +VG++++ MY KC +   A+++F+ +  KD   W+TVIS
Sbjct: 122 VVLGQMIHTCL-VKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVIS 180

Query: 286 GLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 345
               +G   +AL+ F +M      PD VT    IS+C+    +D+G  + K      E+V
Sbjct: 181 CYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHK------ELV 234

Query: 346 P---QMQHY--ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
               +M  +  A +VDMYG+ G LE A     +MP       W +++N 
Sbjct: 235 NSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMP-NKTVVAWNSMING 282


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 146/448 (32%), Positives = 268/448 (59%), Gaps = 6/448 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L AC+          +H   ++     ++   N+LL  Y    ++  A ++F  +
Sbjct: 298 TLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKM 357

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
               +VSWT+II+   + G + +AI +F  +    V+P+  T+ S++ AC+   S   G+
Sbjct: 358 GDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGR 417

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H++ ++N   +N+ + NA+++ Y +CGS+     +F K+P +++VSW TMIGGY++  
Sbjct: 418 DVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNL 477

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
              EA+ +F +M+K  + +P++ T+  VL AC+ ++AL  G+ +H +I  R   S  + V
Sbjct: 478 LPNEALELFLDMQK--QFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLH-V 534

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
             A+++MY KCG + +A  +F+M+  KD ISW+ +I+G  M+G G +A+  F+ M I  +
Sbjct: 535 ACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGI 594

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD+ +F A+++ACSH GL+++G   F +M     + P+++HYACVVD+  R G L +A 
Sbjct: 595 EPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAY 654

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
            FI  MPI+ + ++WG LL+ CRIH + ++ +++ + +   +  +   + +++N +A A+
Sbjct: 655 KFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAE 714

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           +WE+  K+R  +++ G K+  GCSWIEV
Sbjct: 715 KWEEVKKLRKRMQKRGFKQNPGCSWIEV 742



 Score =  202 bits (513), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 127/385 (32%), Positives = 208/385 (54%), Gaps = 21/385 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YTFT  LK  +     ++   +H +V++ G   +  + NSL+  Y     + SAH +F
Sbjct: 194 NCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLF 253

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLVSHK 125
           + +  PDVVSW ++I+G    GF    +++F     + V+ +  TLVSVL AC+++ +  
Sbjct: 254 DELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLS 313

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG+A+H   ++      ++  N +LD Y +CG+L     +FVKM    +VSWT++I  Y 
Sbjct: 314 LGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYV 373

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G   +A+ +F EM+ +K   P+  T+ +++ AC+  S+L  G+ VHSY+  +  +  +
Sbjct: 374 REGLYSDAIGLFDEMQ-SKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYV-IKNGMGSN 431

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V NA+INMY KCG V  A  VF+ +  KD +SW+T+I G + N    +AL+LF L + 
Sbjct: 432 LPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELF-LDMQ 490

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGL-----ILFKAMSTVYEIVPQMQHYAC-VVDMYG 359
               PDD+T   ++ AC+    +D+G      IL +   +         H AC +VDMY 
Sbjct: 491 KQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDL-------HVACALVDMYA 543

Query: 360 RAGLLEEAEAFIREMPIEA--EWSV 382
           + GLL  A+     +P +    W+V
Sbjct: 544 KCGLLVLAQLLFDMIPKKDLISWTV 568



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 178/374 (47%), Gaps = 16/374 (4%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           ++   L+ C+     +    +H+ +I  G   D  +   L+  YV   D+    +IF+ +
Sbjct: 96  SYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKI 155

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
           +   V  W  ++S  +K G  +E++ +F  +    V  N  T   VL   ++L   K  K
Sbjct: 156 MNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECK 215

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H + L+    +N  + N+++  Y + G + S   LF ++ + +VVSW +MI G    G
Sbjct: 216 RVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNG 275

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
           F    + +F +M      E +  TLV+VL AC++I  LS G+ +H +   +   S   + 
Sbjct: 276 FSGNGLEIFIQM-LILGVEVDLTTLVSVLVACANIGNLSLGRALHGF-GVKACFSEEVVF 333

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            N +++MY KCG++  A +VF  +     +SW+++I+     G    A+ LF  M    V
Sbjct: 334 SNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGV 393

Query: 309 FPDDVTFIALISACSHGGLVDQG-----LILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
            PD  T  +++ AC+    +D+G      ++   M +   +   +      ++MY + G 
Sbjct: 394 RPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNAL------INMYAKCGS 447

Query: 364 LEEAEAFIREMPIE 377
           +EEA     ++P++
Sbjct: 448 VEEARLVFSKIPVK 461



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 132/267 (49%), Gaps = 8/267 (2%)

Query: 109 NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168
           N+  SVL  C+   S + GK +H+  + N    +  L   ++  Y+ CG L     +F K
Sbjct: 95  NSYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDK 154

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           +    V  W  ++  YA+ G  +E+VS+F++M+K      N  T   VL   +++  +  
Sbjct: 155 IMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLG-VVGNCYTFTCVLKCFAALGKVKE 213

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
            K VH Y+  +     +  V N++I  Y K G V  A  +F+ L+  D +SW+++I+G  
Sbjct: 214 CKRVHGYV-LKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCV 272

Query: 289 MNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL--FKAMSTVYEIVP 346
           +NG     L++F  M+I  V  D  T ++++ AC++ G +  G  L  F   +   E   
Sbjct: 273 VNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSE--- 329

Query: 347 QMQHYACVVDMYGRAGLLEEA-EAFIR 372
           ++     ++DMY + G L  A E F++
Sbjct: 330 EVVFSNTLLDMYSKCGNLNGATEVFVK 356



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 108/255 (42%), Gaps = 36/255 (14%)

Query: 164 YLFVKMPKRNVVSWTTM--------------------IGGYAERGFCKEAVSVFQEMEKT 203
           ++F K P+R  +  +T+                    I  + E G  + A+ +   + K+
Sbjct: 31  FIFFKQPRRTCLLHSTVCVSPSFTNTTHSVTQNQNAKINKFCEMGDLRNAIEL---LTKS 87

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
           K  E    +  +VL  C+   +L  GK VHS I +   +SV   +G  ++ MYV CGD+ 
Sbjct: 88  KSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISN-GISVDEALGAKLVFMYVNCGDLV 146

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
              ++F+ +       W+ ++S  A  G  R+++ LF  M    V  +  TF  ++   +
Sbjct: 147 QGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFA 206

Query: 324 HGGLVDQ-----GLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEA 378
             G V +     G +L     +   +V  +      +  Y + G +E A     E+  E 
Sbjct: 207 ALGKVKECKRVHGYVLKLGFGSNTAVVNSL------IAAYFKFGGVESAHNLFDELS-EP 259

Query: 379 EWSVWGALLNACRIH 393
           +   W +++N C ++
Sbjct: 260 DVVSWNSMINGCVVN 274


>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Glycine max]
          Length = 566

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 164/482 (34%), Positives = 270/482 (56%), Gaps = 36/482 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N+ T+    KAC+          IHA V++ G    +++ N+L++ Y +   +  A ++F
Sbjct: 76  NNLTYLFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVF 135

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           + +   D+VSW +++ G  +C   +E + +F  +    VK +A T+V V+ AC+SL    
Sbjct: 136 DEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLGEWG 195

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIR------------------------------ 155
           +  A+  +   N  E ++ L N ++D Y R                              
Sbjct: 196 VADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIMGYG 255

Query: 156 -CGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
             G+L +   LF  M +R+V+SWT MI  Y++ G   EA+ +F+EM ++K  +P+E T+ 
Sbjct: 256 KAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESK-VKPDEITVA 314

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
           +VLSAC+   +L  G+  H YI  +YD+     VGNA+I+MY KCG V  A++VF  +  
Sbjct: 315 SVLSACAHTGSLDVGEAAHDYIQ-KYDVKADIYVGNALIDMYCKCGVVEKALEVFKEMRK 373

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           KD +SW+++ISGLA+NG    AL  FS M+   V P    F+ ++ AC+H GLVD+GL  
Sbjct: 374 KDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGILLACAHAGLVDKGLEY 433

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F++M  VY + P+M+HY CVVD+  R+G L+ A  FI+EMP+  +  +W  LL+A ++H 
Sbjct: 434 FESMEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEMPVTPDVVIWRILLSASQVHG 493

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           N  + +   + L+     + G + L SNT+AG++RWED  K+R+ + +  ++K +G S I
Sbjct: 494 NIPLAEIATKKLLELDPSNSGNYVLSSNTYAGSNRWEDAVKMRELMEKSNVQKPSGSSCI 553

Query: 455 EV 456
           E+
Sbjct: 554 EM 555



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 175/362 (48%), Gaps = 37/362 (10%)

Query: 47  IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---D 103
           I N +  + ++   I  AH +F  +  P +  W  +I G S      EAI M+  +    
Sbjct: 13  IYNLIKSYALSPSTILKAHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYNLMYRQG 72

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCG 163
           +  N  T + +  AC+ +     G  IHA  L+   E+++ + NA+++ Y  CG L    
Sbjct: 73  LLGNNLTYLFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQ 132

Query: 164 YLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI 223
            +F +MP+R++VSW +++ GY +    +E + VF+ M +    + +  T+V V+ AC+S+
Sbjct: 133 KVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAM-RVAGVKGDAVTMVKVVLACTSL 191

Query: 224 SALSFGKYVHSYISTRYDLSVSNLVGNAVINM---------------------------- 255
                   +  YI    ++ +   +GN +I+M                            
Sbjct: 192 GEWGVADAMVDYIEEN-NVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAM 250

Query: 256 ---YVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD 312
              Y K G++  A ++F+ ++ +D ISW+ +I+  +  G   +AL+LF  M+ + V PD+
Sbjct: 251 IMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDE 310

Query: 313 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIR 372
           +T  +++SAC+H G +D G      +   Y++   +     ++DMY + G++E+A    +
Sbjct: 311 ITVASVLSACAHTGSLDVGEAAHDYIQK-YDVKADIYVGNALIDMYCKCGVVEKALEVFK 369

Query: 373 EM 374
           EM
Sbjct: 370 EM 371


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 159/479 (33%), Positives = 270/479 (56%), Gaps = 24/479 (5%)

Query: 2   LSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVT---- 57
           LS P   N + F   LKA +L   H+ A  +HA  +  G   D++I N+L++ Y      
Sbjct: 104 LSVPP--NRHVFPSLLKASTLLKHHKLAHSLHACTVRLGLDSDLYIANALINTYAKFHNA 161

Query: 58  --VKDIFSAH---------QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---- 102
             V D+F            ++F+ +   DVVSW T+I+G ++ G + EA+DM   +    
Sbjct: 162 GKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNG 221

Query: 103 DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC 162
            +KP++ TL S+L   +  V    GK IH +++RN  + ++ + ++++D Y +C  L   
Sbjct: 222 KLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECS 281

Query: 163 GYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS 222
              F  +P+++ +SW ++I G  + G     +  F+ M K +  +P   +  +V+ AC+ 
Sbjct: 282 LRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLK-ENVKPMAVSFSSVIPACAH 340

Query: 223 ISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWST 282
           ++ALS G+ +H  I  R     +  + +++++MY KCG++ +A  VF+ +  +D ++W+ 
Sbjct: 341 LTALSLGRQLHGCI-VRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTA 399

Query: 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 342
           +I G AM+G    A+ LF  M+ + V P  V F+A+++ACSH GLVD+G   F +M   +
Sbjct: 400 IIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDF 459

Query: 343 EIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP-IEAEWSVWGALLNACRIHRNDEMFDR 401
            I P ++HYA V D+ GRAG LEEA  FI  M  ++   SVW  LL ACR H++ E+ ++
Sbjct: 460 GIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQPTGSVWSILLAACRAHKSVELAEK 519

Query: 402 IRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +   L++    ++G + LMSN ++ A RW+D  ++R  +R+ GLKK   CSWIEV   +
Sbjct: 520 VLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLRIHMRKKGLKKTPACSWIEVGNQV 578



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 106/417 (25%), Positives = 204/417 (48%), Gaps = 40/417 (9%)

Query: 6   SSYNHYTFTQALKAC---SLAHPHQKALEIHAHVIEY-GHLHDIFIQNSLLHFYVTVKDI 61
           S+   +T ++ L+     +L+   ++A ++HAH+++  G LH     +++L   +     
Sbjct: 2   SNSTQHTISKILRKTPNKTLSVSTRQAKQLHAHIVKTKGTLH----SDNILVLSLYSNLN 57

Query: 62  FSAH--QIFNSVVFPDVV-SWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVL 115
              H   +FNS+  P    +W++II   +       +   F     + V PN +   S+L
Sbjct: 58  LLQHSLHLFNSLPSPPPPLAWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLL 117

Query: 116 SACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK------- 168
            A + L  HKL  ++HA ++R   ++++ + NA+++ Y +  +      +F K       
Sbjct: 118 KASTLLKHHKLAHSLHACTVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGID 177

Query: 169 --------MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
                   MP R+VVSW T+I G+A+ G   EA+ + +EM K  + +P+  TL ++L   
Sbjct: 178 CVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIF 237

Query: 221 SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
           +    ++ GK +H Y + R        +G+++I+MY KC  +  +++ F +L  KD ISW
Sbjct: 238 AEHVDVNKGKEIHGY-AVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISW 296

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340
           +++I+G   NG   + L  F  M+   V P  V+F ++I AC+H   +  G  L   +  
Sbjct: 297 NSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVR 356

Query: 341 V----YEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           +     E +      + +VDMY + G ++ A  ++ +   + +   W A++  C +H
Sbjct: 357 LGFDDNEFIA-----SSLVDMYAKCGNIKMAR-YVFDRIDKRDMVAWTAIIMGCAMH 407


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 168/499 (33%), Positives = 267/499 (53%), Gaps = 41/499 (8%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    S N  TF   L +C+      +   IH+H+ E G   D+ + N+L+  Y     
Sbjct: 271 MLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNC 330

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFH-KEAIDMFCGI-------DVKPNANTLV 112
           I  A + F+ +   DV+SW+ +I+G ++ G+  KE++D    +        V PN  T +
Sbjct: 331 IQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFM 390

Query: 113 SVLSACSSLVSHKLGKAIHAH-------SLRNLN-----------------------EN- 141
           S+L ACS   + + G+ IHA        S R+L                        EN 
Sbjct: 391 SILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENK 450

Query: 142 NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME 201
           N++   ++L  YI+CG L S   +F +M  RNVVSW  MI GYA+ G   +   +   M 
Sbjct: 451 NVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSM- 509

Query: 202 KTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGD 261
           K +  +P+  T++++L AC ++SAL  GK VH+  + +  L    +V  ++I MY KCG+
Sbjct: 510 KVEGFQPDRVTIISILEACGALSALERGKLVHAE-AVKLGLESDTVVATSLIGMYSKCGE 568

Query: 262 VGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISA 321
           V  A  VF+ ++ +D ++W+ +++G   +G G +A+ LF  M+   V P+++TF A+ISA
Sbjct: 569 VTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISA 628

Query: 322 CSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 381
           C   GLV +G  +F+ M   + + P  QHY C+VD+ GRAG L+EAE FI+ MP E + S
Sbjct: 629 CGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDIS 688

Query: 382 VWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIR 441
           VW ALL AC+ H N ++ +     ++  +  +   +  +SN +A A RW+D+ K+R  + 
Sbjct: 689 VWHALLGACKSHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMD 748

Query: 442 RMGLKKKTGCSWIEVNPSI 460
             GLKK  G S IE++  I
Sbjct: 749 DKGLKKDRGESSIEIDGRI 767



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 205/388 (52%), Gaps = 14/388 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T+   ++ C+     +    +H  + E G   DI++ NSL++FY    D+ S  Q+F
Sbjct: 77  NSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVF 136

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
             +   DVV+W+++I+  +      +A D F  +   +++PN  T +S+L AC++    +
Sbjct: 137 RRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLE 196

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
             + IH     +  E ++ +  A++  Y +CG ++    +F KM +RNVVSWT +I   A
Sbjct: 197 KAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANA 256

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +     EA  ++++M +     PN  T V++L++C++  AL+ G+ +HS+IS R  L   
Sbjct: 257 QHRKLNEAFELYEKMLQAG-ISPNAVTFVSLLNSCNTPEALNRGRRIHSHISER-GLETD 314

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG-----RQALQLF 300
            +V NA+I MY KC  +  A + F+ ++ +D ISWS +I+G A +G        +  QL 
Sbjct: 315 VVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLL 374

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV-YEIVPQMQHYACVVDMYG 359
             M    VFP+ VTF++++ ACS  G ++QG  +   +S V +E    +Q    + +MY 
Sbjct: 375 ERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQ--TAIFNMYA 432

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALL 387
           + G + EAE    +M        W +LL
Sbjct: 433 KCGSIYEAEQVFSKME-NKNVVAWASLL 459



 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 121/417 (29%), Positives = 209/417 (50%), Gaps = 41/417 (9%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  TF   LKAC+     +KA EIH  V   G   D+ +  +L+  Y    +I  A +IF
Sbjct: 178 NRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIF 237

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
             +   +VVSWT II   ++     EA +++  +    + PNA T VS+L++C++  +  
Sbjct: 238 QKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALN 297

Query: 126 LGKAIHAH-SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
            G+ IH+H S R L E ++++ NA++  Y +C  +      F +M KR+V+SW+ MI GY
Sbjct: 298 RGRRIHSHISERGL-ETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGY 356

Query: 185 AERGFC-KEAV-SVFQEMEKTKEAE--PNEATLVNVLSACSSISALSFGKYVHSYIST-- 238
           A+ G+  KE++  VFQ +E+ +     PN+ T +++L ACS   AL  G+ +H+ IS   
Sbjct: 357 AQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVG 416

Query: 239 -RYDLSVSNLVGN---------------------------AVINMYVKCGDVGIAIQVFN 270
              D S+   + N                           +++ MY+KCGD+  A +VF+
Sbjct: 417 FESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFS 476

Query: 271 MLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQ 330
            ++ ++ +SW+ +I+G A +G   +  +L S M +    PD VT I+++ AC     +++
Sbjct: 477 EMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALER 536

Query: 331 GLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           G  L  A +    +         ++ MY + G + EA     ++    +   W A+L
Sbjct: 537 GK-LVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKIS-NRDTVAWNAML 591


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 151/453 (33%), Positives = 264/453 (58%), Gaps = 7/453 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +TF+  LKAC+  +     + IH+ V + G   D+F++ +++ FY     +  A ++F
Sbjct: 103 DSFTFSFVLKACARLNLFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVF 162

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           + +V  +VVSWT +I G  + G  +EA+D+F G+    ++P+   +V VL AC+ L   +
Sbjct: 163 DDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLE 222

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ I           N+ +  +++D Y +CGS+    ++F  M ++++V W+ MI GYA
Sbjct: 223 SGRWIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYA 282

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G  +EA+ +F EM K     P+   +V  LS+C+S+ AL  G +    ++  Y+  +S
Sbjct: 283 SNGLPREAIELFFEMRKVN-VRPDCYAMVGALSSCASLGALELGNWAKGLMN--YEEFLS 339

Query: 246 N-LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           N ++G ++I+ Y KCG +  A+ V+ M+  KD++ ++ VISGLAM G    A  +F  M 
Sbjct: 340 NPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMG 399

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
              + P++ TF+ L+  C+H GLVD G   F +MS  + + P ++HY C+VD+  RAG L
Sbjct: 400 KFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFL 459

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           +EA   I+ MP++A   VWG+LL  CR+HR  ++ + + + L+  +  + G + L+SN +
Sbjct: 460 DEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQLAEHVLKQLIELEPWNSGHYVLLSNIY 519

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           + + RW++  KIR  +   G++K  G SW+EV+
Sbjct: 520 SASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVD 552



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 179/384 (46%), Gaps = 26/384 (6%)

Query: 15  QALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF- 73
           + LK   LAH     L +H         HD    N LL   +     FS +  +  +VF 
Sbjct: 15  KCLKHAKLAHCRLLRLNLH---------HD----NDLLSIILRSTINFSNNAQYPILVFH 61

Query: 74  -----PDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
                 +   + T+I G+        A+ ++  +    + P++ T   VL AC+ L    
Sbjct: 62  KTPTNSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFH 121

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG  IH+   +   + ++ +   ++ FY +CG L     +F  M  +NVVSWT MI G  
Sbjct: 122 LGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCI 181

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           E G  +EAV +F+ + ++    P+   +V VL AC+ +  L  G+++   +     LS +
Sbjct: 182 EFGKFREAVDLFRGLLESG-LRPDGFVIVRVLRACARLGDLESGRWIDRCMR-ECGLSRN 239

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V  ++++MY KCG +  A  VF+ +  KD + WS +I G A NG  R+A++LF  M  
Sbjct: 240 VFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRK 299

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             V PD    +  +S+C+  G ++ G    K +    E +        ++D Y + G +E
Sbjct: 300 VNVRPDCYAMVGALSSCASLGALELG-NWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSME 358

Query: 366 EAEAFIREMPIEAEWSVWGALLNA 389
           EA    + M  E +  V+ A+++ 
Sbjct: 359 EALGVYKMMK-EKDRVVFNAVISG 381


>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic [Vitis vinifera]
 gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
          Length = 533

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 173/486 (35%), Positives = 265/486 (54%), Gaps = 52/486 (10%)

Query: 24  HPHQKALE-----------IHAHVIEYGHLHDIFIQNSLLHFYVTVK--DIFSAHQIFNS 70
           HPH   LE           IHAH+++ G        + +L F  T    DI  A+ +F  
Sbjct: 24  HPHLSILEKHCTTMKDLQKIHAHLLKTGLAKHPLAVSPVLAFCATSPGGDINYAYLVFTQ 83

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKL 126
           +  P++ SW TII G S+      AI +F  +     V+P+  T  SV  A + L     
Sbjct: 84  IHSPNLFSWNTIIRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHY 143

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCG-------------------------SLAS 161
           G  +H   ++   + +  + N I+  Y  CG                          LA 
Sbjct: 144 GAQLHGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAK 203

Query: 162 CG------YLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVN 215
           CG       LF +MP RN VSW +MI GY   G  +EA+ +F +M++ +  +P+E T+V+
Sbjct: 204 CGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEER-IKPSEFTMVS 262

Query: 216 VLSACSSISALSFGKYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
           +L+A + + AL  G+++H YI    ++L+V  +V  ++I+MY KCG +G A QVF M   
Sbjct: 263 LLNASARLGALKQGEWIHDYIRKNNFELNV--IVTASIIDMYCKCGSIGEAFQVFEMAPL 320

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           K   SW+T+I GLAMNGC  +A+QLFS +  + + PDDVTF+ +++AC++ GLVD+    
Sbjct: 321 KGLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAKEY 380

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F  MS  Y+I P ++HY+C+VD  GRAGLLEEAE  IR MP+  +  +W +LL+ACR H 
Sbjct: 381 FSLMSKTYKIEPSIKHYSCMVDTLGRAGLLEEAEELIRNMPVNPDAIIWSSLLSACRKHG 440

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           N E+  R  + +V+  G     + L+SN +A +D++E+  + R  ++   ++K+ GCS I
Sbjct: 441 NVELAKRAAKHIVDLDGNDSCGYVLLSNIYAASDQFEEAMEQRLSMKEKQIEKEPGCSLI 500

Query: 455 EVNPSI 460
           EVN  I
Sbjct: 501 EVNGEI 506



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 150/322 (46%), Gaps = 39/322 (12%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           P    + +  +A     LAH      ++H  VI+ G   D FI+N++++ Y     +   
Sbjct: 123 PHRLTYPSVFKAYAQLGLAH---YGAQLHGRVIKLGLQFDPFIRNTIIYMYANCGFLSEM 179

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKC-------------------------------GFHK 93
            + F   +  D+V+W ++I GL+KC                               G  +
Sbjct: 180 WKAFYERMDFDIVAWNSMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLR 239

Query: 94  EAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAIL 150
           EA+D+F  +    +KP+  T+VS+L+A + L + K G+ IH +  +N  E N+I+  +I+
Sbjct: 240 EALDLFGQMQEERIKPSEFTMVSLLNASARLGALKQGEWIHDYIRKNNFELNVIVTASII 299

Query: 151 DFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNE 210
           D Y +CGS+     +F   P + + SW TMI G A  G   EA+ +F  +E      P++
Sbjct: 300 DMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGLAMNGCENEAIQLFSRLE-CSNLRPDD 358

Query: 211 ATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF- 269
            T V VL+AC+    +   K   S +S  Y +  S    + +++   + G +  A ++  
Sbjct: 359 VTFVGVLTACNYSGLVDKAKEYFSLMSKTYKIEPSIKHYSCMVDTLGRAGLLEEAEELIR 418

Query: 270 NMLAYKDKISWSTVISGLAMNG 291
           NM    D I WS+++S    +G
Sbjct: 419 NMPVNPDAIIWSSLLSACRKHG 440


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 165/494 (33%), Positives = 272/494 (55%), Gaps = 52/494 (10%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           +    L AC+      +  ++H + +  G   D+F+ N+++  Y     +  A+++F  +
Sbjct: 252 SLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERM 311

Query: 72  VFPDVVSWTTIISGLSKCG--------FHK---------------------------EAI 96
              DVVSW  +++G S+ G        F K                           EA+
Sbjct: 312 KVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEAL 371

Query: 97  DMF-----CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR---NLNENN----II 144
           D+F     CG +  PN  TLVS+LS C+S  +   GK  H H+++   NL+EN+    ++
Sbjct: 372 DVFRQMLLCGSE--PNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLM 429

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPK--RNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202
           + NA++D Y +C S  +   +F  +P   R+VV+WT +IGG A+ G   EA+ +F +M +
Sbjct: 430 VINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQ 489

Query: 203 TKE-AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGD 261
                 PN  T+   L AC+ + AL FG+ +H+Y+      S    V N +I+MY K GD
Sbjct: 490 PDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGD 549

Query: 262 VGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISA 321
           V  A  VF+ +  ++ +SW+++++G  M+G G +ALQ+F  M    + PD VTF+ ++ A
Sbjct: 550 VDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYA 609

Query: 322 CSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 381
           CSH G+VDQG+  F  M+  + +VP  +HYAC+VD+  RAG L+EA   IR MP++   +
Sbjct: 610 CSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPA 669

Query: 382 VWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIR 441
           VW ALL+ACR++ N E+ +     L+  +  + G++ L+SN +A A  W+D  +IR  ++
Sbjct: 670 VWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMK 729

Query: 442 RMGLKKKTGCSWIE 455
             G+KK+ GCSW++
Sbjct: 730 NTGIKKRPGCSWVQ 743



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 126/447 (28%), Positives = 212/447 (47%), Gaps = 66/447 (14%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +HYTF   LKAC      +    +HA V   G   ++F+ N L+  Y       +A Q+F
Sbjct: 144 DHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVF 203

Query: 69  NSVV---FPDVVSWTTIISGLSKCGFHKEAIDMFC----GIDVKPNANTLVSVLSACSSL 121
           + +      D+VSW +I++   + G    A+ MF      + ++P+A +LV+VL AC+S+
Sbjct: 204 DEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASV 263

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM- 180
            +   GK +H ++LR+    ++ + NA++D Y +CG +     +F +M  ++VVSW  M 
Sbjct: 264 GAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMV 323

Query: 181 ----------------------------------IGGYAERGFCKEAVSVFQEMEKTKEA 206
                                             I GYA+RG   EA+ VF++M     +
Sbjct: 324 TGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCG-S 382

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN-------LVGNAVINMYVKC 259
           EPN  TLV++LS C+S   L  GK  H + + ++ L++         +V NA+I+MY KC
Sbjct: 383 EPNVVTLVSLLSGCASAGTLLHGKETHCH-AIKWILNLDENDPGDDLMVINALIDMYSKC 441

Query: 260 GDVGIAIQVFNMLAYKDK--ISWSTVISGLAMNGCGRQALQLFSLMII--NAVFPDDVTF 315
                A  +F+++  KD+  ++W+ +I G A +G   +AL+LFS M+   N V P+  T 
Sbjct: 442 KSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTI 501

Query: 316 IALISACSHGGLVDQG-----LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAF 370
              + AC+  G +  G      +L     +    V       C++DMY ++G ++ A   
Sbjct: 502 SCALMACARLGALRFGRQIHAYVLRNRFESAMLFVAN-----CLIDMYSKSGDVDAARVV 556

Query: 371 IREMPIEAEWSVWGALLNACRIHRNDE 397
              M      S W +L+    +H   E
Sbjct: 557 FDNMHQRNGVS-WTSLMTGYGMHGRGE 582



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 141/297 (47%), Gaps = 42/297 (14%)

Query: 76  VVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHKLGKAIHA 132
           V  W  +I      GF ++ + ++  +     +P+  T   VL AC  + S + G ++HA
Sbjct: 110 VFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHA 169

Query: 133 HSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV---VSWTTMIGGYAERGF 189
               +  E N+ + N ++  Y RCG+  +   +F +M +R V   VSW +++  Y + G 
Sbjct: 170 VVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGD 229

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
              A+ +F+ M +     P+  +LVNVL AC+S+ A S GK VH Y + R  L     VG
Sbjct: 230 SIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGY-ALRSGLFEDVFVG 288

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKIS------------------------------ 279
           NAV++MY KCG +  A +VF  +  KD +S                              
Sbjct: 289 NAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIE 348

Query: 280 -----WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
                WS VI+G A  G G +AL +F  M++    P+ VT ++L+S C+  G +  G
Sbjct: 349 LNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHG 405



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 121/236 (51%), Gaps = 16/236 (6%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEY-------GHLHDIFIQNSLLH 53
           ML C S  N  T    L  C+ A       E H H I++           D+ + N+L+ 
Sbjct: 377 MLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALID 436

Query: 54  FYVTVKDIFSAHQIFNSVVFPD--VVSWTTIISGLSKCGFHKEAIDMFCGI-----DVKP 106
            Y   K   +A  +F+ +   D  VV+WT +I G ++ G   EA+++F  +      V P
Sbjct: 437 MYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMP 496

Query: 107 NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII-LDNAILDFYIRCGSLASCGYL 165
           NA T+   L AC+ L + + G+ IHA+ LRN  E+ ++ + N ++D Y + G + +   +
Sbjct: 497 NAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVV 556

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221
           F  M +RN VSWT+++ GY   G  +EA+ +F EM+K     P+  T V VL ACS
Sbjct: 557 FDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLV-PDGVTFVVVLYACS 611



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 126/246 (51%), Gaps = 18/246 (7%)

Query: 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYV 232
            V  W  +I      GF ++ + +++ M++     P+  T   VL AC  I +   G  V
Sbjct: 109 TVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLG-WRPDHYTFPFVLKACGEIPSFRCGASV 167

Query: 233 HSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DKISWSTVISGLA 288
           H+ + ++ ++ +V   VGN +++MY +CG    A QVF+ +  +   D +SW+++++   
Sbjct: 168 HAVVFASGFEWNV--FVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYM 225

Query: 289 MNGCGRQALQLFSLMIIN-AVFPDDVTFIALISACSHGGLVDQGLIL--FKAMSTVYEIV 345
             G   +A+++F  M  +  + PD V+ + ++ AC+  G   +G  +  +   S ++E V
Sbjct: 226 QGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDV 285

Query: 346 PQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDE---MFDR 401
                   VVDMY + G++EEA      M ++   S W A++    +I R D+   +F++
Sbjct: 286 FVGN---AVVDMYAKCGMMEEANKVFERMKVKDVVS-WNAMVTGYSQIGRFDDALGLFEK 341

Query: 402 IRQDLV 407
           IR++ +
Sbjct: 342 IREEKI 347


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 157/469 (33%), Positives = 267/469 (56%), Gaps = 9/469 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           +LS  SS +  T+   +  C        AL +H H+++ G   D F+   L+  Y  +  
Sbjct: 68  VLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGS 127

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSA 117
           +  A ++F+      +  W  +   L+  G  +E + ++     I V+ +  T   VL A
Sbjct: 128 VDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKA 187

Query: 118 CSS---LVSHKL-GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
           C +    V+H + GK IHAH  R    +++ +   ++D Y R G +    Y+F  MP RN
Sbjct: 188 CVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRN 247

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALSFGKYV 232
           VVSW+ MI  YA+ G   EA+  F+EM  +TK++ PN  T+V+VL AC+S++AL  GK +
Sbjct: 248 VVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLI 307

Query: 233 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
           H YI  R   S+  ++ +A++ MY +CG + +  +VF+ +  +D +SW+++IS   ++G 
Sbjct: 308 HGYILRRGLDSILPVI-SALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGY 366

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
           G++A+Q+F  M+ N   P  VTF++++ ACSH GLV++G  LF+ M   + I PQ++HYA
Sbjct: 367 GKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYA 426

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           C+VD+ GRA  L+EA   +++M  E    VWG+LL +CRIH N E+ +R  + L   +  
Sbjct: 427 CMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPK 486

Query: 413 SVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           + G + L+++ +A A  W++  +++  +   GL+K  G  W+EV   ++
Sbjct: 487 NAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMY 535


>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 593

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 166/482 (34%), Positives = 270/482 (56%), Gaps = 36/482 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +H TF    K+C+     ++   +  H ++ G    +F+ N+L+H YV   ++  A ++F
Sbjct: 112 SHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVF 171

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHK 125
           + ++  DVVSW +II G  +    K+ +D+F     I+V+ ++ T++  +SA   L   +
Sbjct: 172 DGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWE 231

Query: 126 LG----KAIHAHSL---------------------------RNLNENNIILDNAILDFYI 154
           +G    K I  H +                             + E NI+  NA++  Y 
Sbjct: 232 MGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYA 291

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           + G+L +   LF +MP R+V+SWT+MI GY+      EAV +FQEM      +P+E T+ 
Sbjct: 292 KVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEM-MVSMVKPDEITVA 350

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
             LSAC+ + +L  G+ VH YI  ++D+     VGN++I+MY KCG V  A+QVFN +  
Sbjct: 351 TALSACAHLGSLDAGEAVHDYIR-KHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKT 409

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           +D +SW+++ISGLA+NG    AL +F  M+   + P   TF+ ++ AC+H GLVD+G+  
Sbjct: 410 RDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEH 469

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           FK+M   Y + P+M+HY CVVD+  R+G L+ A  FI++MPI  +  +W  LL+AC++H 
Sbjct: 470 FKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHG 529

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           N  + + + + L+     + G + L S+T+AG+DRW+D  KIR  +    L+K    S I
Sbjct: 530 NLVLAEIVSKKLLVLDPSNNGNYVLSSSTYAGSDRWDDVIKIRKLMEVTNLQKPCAYSSI 589

Query: 455 EV 456
           EV
Sbjct: 590 EV 591



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 111/478 (23%), Positives = 225/478 (47%), Gaps = 48/478 (10%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYG-HLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           TF+++ +A S +       E+HA ++    H+    I   + H+ ++ + +  AH +FN 
Sbjct: 13  TFSKSQRAISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSPQSLPKAHFVFNQ 72

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLG 127
           +  P ++ W  +I GLSK     +AI  +  +    ++ +  T + +  +C+ +   + G
Sbjct: 73  IQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQG 132

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           + +  HS++   E+ + + NA++  Y+  G LA    +F  M +R+VVSW ++I GY + 
Sbjct: 133 QMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQF 192

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR-------- 239
              K+ + +F+EM+       +  T++  +SA   +S    G Y+  YI           
Sbjct: 193 NRFKKVLDLFREMQAI-NVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYL 251

Query: 240 ---------------------YDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDK 277
                                Y +   N+V  NA+I  Y K G++  A ++FN +  +D 
Sbjct: 252 GNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDV 311

Query: 278 ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKA 337
           ISW+++I G ++     +A++LF  M+++ V PD++T    +SAC+H G +D G  +   
Sbjct: 312 ISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDY 371

Query: 338 MSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
           +   ++I   +     ++DMY + G++E+A     +M      S W ++++   ++   E
Sbjct: 372 IRK-HDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVS-WTSIISGLAVNGFAE 429

Query: 398 ----MFDR-IRQDLVNKKGVSVGTF------ALMSNTFAGADRWEDTNKIRDEIRRMG 444
               +FD+ +++ +    G  VG         L+          E+T ++  E++  G
Sbjct: 430 SALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYG 487


>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 661

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 166/487 (34%), Positives = 269/487 (55%), Gaps = 44/487 (9%)

Query: 12  TFTQALKACSLAHPHQK---ALEIHAHVIEYGHL-HDIFIQNSLLHFYVTVKDIFSAHQI 67
           T   A+KA +  H H        +H   +++GH+   + + N+L+HFY   + +  A  +
Sbjct: 139 TLVFAIKAAASEHEHHSPSGGEGVHCVALKWGHVAQSVLVGNALVHFYANHRSLAHARNL 198

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV----KPNANTLVSVLSACSSLVS 123
           F+ +   DVVSWTT++ G ++ G   EA  +FC + V    +PN  TLV+V+SA   +  
Sbjct: 199 FDEMPDRDVVSWTTLVDGYARRGLADEAWRVFCRMVVAGGLQPNEVTLVAVVSAMGQMGL 258

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDF------------------------------- 152
              G+ ++ +        ++ L+NA++D                                
Sbjct: 259 LAFGRMVYRYVADGGVGRSVNLENALIDMFGKFGCAASAREVFDSMAVKDVYSWTTMVNA 318

Query: 153 YIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEAT 212
           Y +CG L S   LF  MP+RN VSW+ MI  Y++    +EAV +F+ M + +  EP  A 
Sbjct: 319 YAKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIE-EGVEPINAG 377

Query: 213 LVNVLSACSSISALSFGKYVHS--YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN 270
           LV+VLSAC+ +  L  G++++    IS +  L+V+  +GNA I++Y KCGD   A ++F 
Sbjct: 378 LVSVLSACAQLGCLDLGRWIYDNYVISGKAVLTVN--LGNAFIDVYAKCGDFDAASKLFA 435

Query: 271 MLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQ 330
            +A ++ +SW+++I   A++G   + L+LF  +    + PD++TF+ L+SACSH GLV +
Sbjct: 436 EMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPDEITFLGLLSACSHSGLVSE 495

Query: 331 GLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 390
           G   FK M  +Y I P+ +HYAC++D+ G+ GLLEEA    + MP+E + + WGALLNAC
Sbjct: 496 GRRYFKEMKLIYGIEPKSEHYACMIDLLGKIGLLEEAFEVAKGMPMETDEAGWGALLNAC 555

Query: 391 RIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTG 450
           R++ N E+ +     LV    +  G + LMS  +A  ++W+    +R  +R  G+KK  G
Sbjct: 556 RMYGNVEIGEFAADKLVQLNPLDSGIYVLMSQIYASKNKWDQVKILRVLMRERGVKKNPG 615

Query: 451 CSWIEVN 457
           CS IEV+
Sbjct: 616 CSSIEVD 622


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 160/449 (35%), Positives = 259/449 (57%), Gaps = 8/449 (1%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           LK C+  +   +   IHA ++      D+ +QN+LL+ Y    D+  A ++F+ +   DV
Sbjct: 22  LKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDV 81

Query: 77  VSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKL--GKAIH 131
           V+WT +I+G S+    ++A+ +      I +KPN  TL S+L A S + S  +  G+ +H
Sbjct: 82  VTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLH 141

Query: 132 AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
              LR   ++N+ +  AILD Y RC  L     +F  M  +N VSW  +I GYA +G   
Sbjct: 142 GLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGD 201

Query: 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNA 251
           +A  +F  M + +  +P   T  +VL AC+S+ +L  GK+VH+ +  ++   +   VGN 
Sbjct: 202 KAFCLFSNMLR-ENVKPTHFTYSSVLCACASMGSLEQGKWVHALM-IKWGEKLVAFVGNT 259

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD 311
           +++MY K G +  A +VF+ LA +D +SW+++++G + +G G+ ALQ F  M+   + P+
Sbjct: 260 LLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPN 319

Query: 312 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFI 371
           D+TF+ +++ACSH GL+D+G   F  M   Y + PQ+ HY  +VD+ GRAG L+ A  FI
Sbjct: 320 DITFLCVLTACSHAGLLDEGRHYFDMMKK-YNVEPQISHYVTMVDLLGRAGHLDRAIQFI 378

Query: 372 REMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWE 431
            EMPI+   +VWGALL ACR+H+N E+     + +        GT  L+ N +A A RW 
Sbjct: 379 SEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALAGRWN 438

Query: 432 DTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           D  K+R  ++  G+KK+  CSW+E+   +
Sbjct: 439 DAAKVRKMMKESGVKKEPACSWVEMENEV 467



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 143/262 (54%), Gaps = 13/262 (4%)

Query: 113 SVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKR 172
           ++L  C+ L     GK IHA  L +   +++++ N +L+ Y +CG L     LF +M  R
Sbjct: 20  TLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSR 79

Query: 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF--GK 230
           +VV+WT +I GY++    ++A+ +  EM +    +PN+ TL ++L A S + +     G+
Sbjct: 80  DVVTWTALITGYSQHDRPQDALLLLPEMLRIG-LKPNQFTLASLLKAASGVGSTDVLQGR 138

Query: 231 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMN 290
            +H  +  RY    +  V  A+++MY +C  +  A  +F+++  K+++SW+ +I+G A  
Sbjct: 139 QLHG-LCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARK 197

Query: 291 GCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG----LILFKAMSTVYEIVP 346
           G G +A  LFS M+   V P   T+ +++ AC+  G ++QG     ++ K    +   V 
Sbjct: 198 GQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVG 257

Query: 347 QMQHYACVVDMYGRAGLLEEAE 368
                  ++DMY ++G +E+A+
Sbjct: 258 NT-----LLDMYAKSGSIEDAK 274



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 108/272 (39%), Gaps = 52/272 (19%)

Query: 10  HYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN 69
           H+T++  L AC+     ++   +HA +I++G     F+ N+LL  Y     I  A ++F+
Sbjct: 219 HFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFD 278

Query: 70  SVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKL 126
            +   DVVSW ++++G S+ G  K A+  F       + PN  T + VL+ACS       
Sbjct: 279 RLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACS------- 331

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS----WTTMIG 182
               HA                        G L    + F  M K NV      + TM+ 
Sbjct: 332 ----HA------------------------GLLDEGRHYFDMMKKYNVEPQISHYVTMVD 363

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
                G    A+    EM      +P  A    +L AC     +  G Y    I   ++L
Sbjct: 364 LLGRAGHLDRAIQFISEM----PIKPTAAVWGALLGACRMHKNMELGGYAAECI---FEL 416

Query: 243 SVSNLVGNAVI--NMYVKCGDVGIAIQVFNML 272
             S+  G  V+  N+Y   G    A +V  M+
Sbjct: 417 D-SHYPGTHVLLYNIYALAGRWNDAAKVRKMM 447


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 153/454 (33%), Positives = 272/454 (59%), Gaps = 7/454 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N   +   L  C      ++   +HAH+I+  +L  ++++  L+ FYV    +  A  +F
Sbjct: 57  NFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVF 116

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           + +   +VVSWT +IS  S+ G+  +A+ +F  +     +PN  T  +VL++C       
Sbjct: 117 DVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFV 176

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG+ IH+H ++   E ++ + +++LD Y + G +     +F  +P+R+VVS T +I GYA
Sbjct: 177 LGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYA 236

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G  +EA+ +F+ +++ +  + N  T  +VL+A S ++AL  GK VH+++  R ++   
Sbjct: 237 QLGLDEEALELFRRLQR-EGMQSNYVTYTSVLTALSGLAALDHGKQVHNHL-LRSEVPSY 294

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
            ++ N++I+MY KCG++  A ++F+ L  +  ISW+ ++ G + +G GR+ L+LF+LMI 
Sbjct: 295 VVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMID 354

Query: 306 -NAVFPDDVTFIALISACSHGGLVDQGLILFKAMST-VYEIVPQMQHYACVVDMYGRAGL 363
            N V PD VT +A++S CSHGGL D+G+ +F  M++    + P  +HY CVVDM GRAG 
Sbjct: 355 ENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGRAGR 414

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           +E A  F+++MP E   ++WG LL AC +H N ++ + +   L+  +  + G + ++SN 
Sbjct: 415 VEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIEPENAGNYVILSNL 474

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +A A RWED   +R+ + +  + K+ G SWIE++
Sbjct: 475 YASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELD 508


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 160/469 (34%), Positives = 262/469 (55%), Gaps = 9/469 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           +L C  +    TF   + +C+  +     L++H  ++  G   D F+   L++ Y  +  
Sbjct: 69  LLCCEPNPTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGS 128

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSA 117
           I  A ++F+      +  W  +   L+  G  KE +D++     I +  +  T   VL A
Sbjct: 129 IDRARKVFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKA 188

Query: 118 CS----SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
           C     S+   + GK IHAH LR+  E NI +   +LD Y + GS++    +F  MP +N
Sbjct: 189 CVVSELSVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKN 248

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEME-KTKEAEPNEATLVNVLSACSSISALSFGKYV 232
            VSW+ MI  +A+     +A+ +FQ M  +  ++ PN  T+VNVL AC+ ++AL  GK +
Sbjct: 249 FVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLI 308

Query: 233 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
           H YI  R   S+  ++ NA+I MY +CG++ +  +VF+ +  +D +SW+++IS   M+G 
Sbjct: 309 HGYILRRGLDSILPVL-NALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGF 367

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
           G++A+Q+F  MI     P  ++FI ++ ACSH GLV++G ILF++M + Y I P M+HYA
Sbjct: 368 GKKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYA 427

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           C+VD+ GRA  L+EA   I +M  E   +VWG+LL +CRIH N E+ +R    L   +  
Sbjct: 428 CMVDLLGRANRLDEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTLLFELEPR 487

Query: 413 SVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           + G + L+++ +A A  W +   +   +   GL+K  GCSWIEV   ++
Sbjct: 488 NAGNYVLLADIYAEAKMWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVY 536


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 155/463 (33%), Positives = 270/463 (58%), Gaps = 20/463 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N++T+   LK C+          +H  V+  G   D+F++ +L+  Y    +I  AH++F
Sbjct: 131 NNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVF 190

Query: 69  NSVVFPDVVSWTTIISGLSKCG--------FHKEAIDMFCGIDVKPNANTLVSVLSACSS 120
           + ++  DVV WT +I+   +          F K   + F G ++     T +SV SA   
Sbjct: 191 DRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEI-----TAISVASAVGQ 245

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           L   ++  ++H +++ N    ++ + N+I+  Y +CG++     +F +M +RN +SW +M
Sbjct: 246 LGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSM 305

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTR 239
           + GY + G   +A+S+F +M+ + E +PN  T + ++SACS + +   G+ +H++ IS++
Sbjct: 306 LSGYTQNGRPTDALSLFNQMQAS-ECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSK 364

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFN--MLAYKDKISWSTVISGLAMNGCGRQAL 297
            D+  +  + NA+++MY+KCGD+  A+++FN   L  +D  SW+ +ISG  ++G G++AL
Sbjct: 365 MDIDTT--LRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEAL 422

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
           +LFS M +  V P+D+TF +++SACSH GL+D+G   F  M+ +  + P+M+HYAC+VDM
Sbjct: 423 ELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKL-SVRPEMKHYACMVDM 481

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTF 417
            GRAG L EA   I+++P      VWGALL ACRIH N E+ +    +L   +    G +
Sbjct: 482 LGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYY 541

Query: 418 ALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            LMSN +A +++W++   +R  ++  GLKK    S IE    +
Sbjct: 542 VLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEV 584



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 122/288 (42%), Gaps = 22/288 (7%)

Query: 114 VLSACSSLVSHKLGKAIHAH-SLRNLNENNIILDNAILDFYIRCGSLASCGYLF------ 166
           +L  C+SL + KL   IH+  S R    +       ++  Y + G L S   LF      
Sbjct: 31  LLQCCTSLTTLKL---IHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLFDHRHHH 87

Query: 167 ----VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS 222
                + P  N     TM+  YA  G   EA+ ++  M++      N  T   VL  C+S
Sbjct: 88  HHGHTQAP--NSFLCNTMLRAYANAGRSYEAIDLYIYMQRMG-VGVNNFTYPFVLKVCAS 144

Query: 223 ISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWST 282
                FG+ VH  +  R        V  A+++MY KCG++G A +VF+ +  +D + W+ 
Sbjct: 145 ELGAVFGEVVHGQV-VRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTA 203

Query: 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTV 341
           +I+         +AL LF  M       D++T I++ SA   G L D  + I     + +
Sbjct: 204 MITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAV--GQLGDGRMAISVHGYAVL 261

Query: 342 YEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
              +  +     +V MY + G +E A      M  E     W ++L+ 
Sbjct: 262 NGFIGDVSVGNSIVGMYAKCGNVERARLVFDRME-ERNGISWNSMLSG 308


>gi|225456719|ref|XP_002268090.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 529

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 159/452 (35%), Positives = 254/452 (56%), Gaps = 7/452 (1%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           YT    +KAC L     +  +IH  + + G   ++ IQ +LL+ Y    +     QIF+ 
Sbjct: 80  YTLVFVIKACGLRPVILEGEQIHGQIFKLGFEFEVIIQTALLNLYGLFDEDCGLQQIFDE 139

Query: 71  VVFPDVVSWTTIISGLS--KCGFHKEAI--DMFCGIDVKPNANTLVSVLSACSSLVSHKL 126
           +   D+V W  +I+  +   C +    +  DM    +VKPN  T VS+LS CSSL + + 
Sbjct: 140 MPQRDLVMWNALIAAYAHGNCPYKVREVSYDMVRS-NVKPNGVTAVSILSVCSSLRALRE 198

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           GKA+H +  +NL E ++ + NA++  Y +CGS+     +F  MP RNVVSWT++I GY++
Sbjct: 199 GKAVHGYVTKNLIEFDVFVHNALIVVYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGYSD 258

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
                EA+  F++ME  +   P+E T++ V+  CS + +   G+++  Y+     L  S 
Sbjct: 259 NNCPNEALGFFKQME-AENIRPDEITVLGVVCMCSKLRSFELGEWISQYVVKIGLLKESP 317

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            + NA+++M+ KCG++  A Q+F+ +  K  +SW+ +I GLAM+G G  AL  F  M   
Sbjct: 318 AIANALMDMHAKCGNINRACQIFDGMEEKTIVSWTIMIQGLAMHGHGLSALVRFCQMQRE 377

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
              PD + F++L+SACSH GLVD+G   F +M   Y I P M+HY C+VD+  RAGL++E
Sbjct: 378 GFKPDSLVFLSLLSACSHAGLVDEGWRCFSSMEADYHISPWMEHYGCMVDILCRAGLVDE 437

Query: 367 AEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAG 426
           A  F++ MPI+ +  VW  LL AC    N  + +++   L          + L+SN FA 
Sbjct: 438 AFKFVQNMPIKPDMIVWRTLLGACHTQGNISLANQVMNYLCELGPKKSEDYVLLSNLFAS 497

Query: 427 ADRWEDTNKIRDEIRRMGL-KKKTGCSWIEVN 457
              W++  ++R E+   G+ K+  GCS+IE +
Sbjct: 498 NAEWDNVGEVRKEMGDRGVTKQDPGCSFIEAD 529



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 90/294 (30%), Positives = 150/294 (51%), Gaps = 8/294 (2%)

Query: 36  VIEYGHLHDIFIQNSLLHFY--VTVKDIFS-AHQIFNSVVFPDVVSWTTIISGLSKCGFH 92
           +I  GHLH+  + + L+  +  +T+    S A +I + +   D  +W TII G  +    
Sbjct: 1   MITNGHLHNPTLASKLVVSFASITLPGTTSVARRIADQIDGLDTYTWNTIIRGYLEGNDP 60

Query: 93  KEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAI 149
           +EAI ++  +    +K +  TLV V+ AC        G+ IH    +   E  +I+  A+
Sbjct: 61  EEAILVYNHVRKKGLKVDTYTLVFVIKACGLRPVILEGEQIHGQIFKLGFEFEVIIQTAL 120

Query: 150 LDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN 209
           L+ Y           +F +MP+R++V W  +I  YA  G C   V            +PN
Sbjct: 121 LNLYGLFDEDCGLQQIFDEMPQRDLVMWNALIAAYA-HGNCPYKVREVSYDMVRSNVKPN 179

Query: 210 EATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF 269
             T V++LS CSS+ AL  GK VH Y+ T+  +     V NA+I +Y KCG +  A+QVF
Sbjct: 180 GVTAVSILSVCSSLRALREGKAVHGYV-TKNLIEFDVFVHNALIVVYSKCGSIRDAVQVF 238

Query: 270 NMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
            ++  ++ +SW+++I+G + N C  +AL  F  M    + PD++T + ++  CS
Sbjct: 239 QLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGVVCMCS 292



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 141/288 (48%), Gaps = 6/288 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L  CS     ++   +H +V +     D+F+ N+L+  Y     I  A Q+F
Sbjct: 179 NGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEFDVFVHNALIVVYSKCGSIRDAVQVF 238

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   +VVSWT++I+G S      EA+  F  ++   ++P+  T++ V+  CS L S +
Sbjct: 239 QLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGVVCMCSKLRSFE 298

Query: 126 LGKAIHAHSLR-NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           LG+ I  + ++  L + +  + NA++D + +CG++     +F  M ++ +VSWT MI G 
Sbjct: 299 LGEWISQYVVKIGLLKESPAIANALMDMHAKCGNINRACQIFDGMEEKTIVSWTIMIQGL 358

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           A  G    A+  F +M++ +  +P+    +++LSACS    +  G    S +   Y +S 
Sbjct: 359 AMHGHGLSALVRFCQMQR-EGFKPDSLVFLSLLSACSHAGLVDEGWRCFSSMEADYHISP 417

Query: 245 SNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDKISWSTVISGLAMNG 291
                  ++++  + G V  A + V NM    D I W T++      G
Sbjct: 418 WMEHYGCMVDILCRAGLVDEAFKFVQNMPIKPDMIVWRTLLGACHTQG 465



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 105/215 (48%), Gaps = 6/215 (2%)

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           +W T+I GY E    +EA+ V+  + K K  + +  TLV V+ AC     +  G+ +H  
Sbjct: 46  TWNTIIRGYLEGNDPEEAILVYNHVRK-KGLKVDTYTLVFVIKACGLRPVILEGEQIHGQ 104

Query: 236 ISTRYDLSVSNLVGNAVINMY-VKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
           I  +       ++  A++N+Y +   D G+  Q+F+ +  +D + W+ +I+  A   C  
Sbjct: 105 I-FKLGFEFEVIIQTALLNLYGLFDEDCGLQ-QIFDEMPQRDLVMWNALIAAYAHGNCPY 162

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
           +  ++   M+ + V P+ VT ++++S CS    + +G  +   ++          H A +
Sbjct: 163 KVREVSYDMVRSNVKPNGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEFDVFVHNALI 222

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           V +Y + G + +A    + MP+    S W +L+N 
Sbjct: 223 V-VYSKCGSIRDAVQVFQLMPMRNVVS-WTSLING 255


>gi|326523581|dbj|BAJ92961.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 384

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 160/384 (41%), Positives = 220/384 (57%), Gaps = 7/384 (1%)

Query: 79  WTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNL 138
           WT  IS L++ G   EA+  F  +D  PNA TL SVL AC+ L S  LG+AIH   LR  
Sbjct: 2   WTKRISALARGGRAAEAVAEFSRMDAAPNALTLASVLPACARLRSLGLGRAIHGFWLRRG 61

Query: 139 NEN--NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSV 196
                N I+DNA+LD Y +CG+L S   LF  MP+R+V +WT M  G A  G  ++AV+V
Sbjct: 62  GGPGANPIVDNAVLDVYAKCGALRSARRLFDGMPERDVFAWTAMAWGLARGGSPQDAVAV 121

Query: 197 FQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMY 256
           F+ M     A PNEATLV+VL A +S  AL+ GK +HSY   R  L    +VGNA+++ Y
Sbjct: 122 FRAMLSDGGARPNEATLVSVLHAVASTGALACGKLLHSYALKR-GLGGEQVVGNALVDAY 180

Query: 257 VKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFI 316
            KCG+  +A QVF++L  KD +SW+TV+  +A++G  R+ALQLFS+M+   V PDD  F+
Sbjct: 181 AKCGEARLAFQVFDLLPDKDLVSWATVMRAMAVHGRCREALQLFSMMLRQGVRPDDAVFL 240

Query: 317 ALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPI 376
           +L+ AC H G VDQ L L  AM  +Y I PQ +HY C +D  GRAG L+      R MP+
Sbjct: 241 SLLYACCHAGQVDQTLHLLDAMGRIYGIAPQKEHYTCALDACGRAGRLDGVGEIFRRMPM 300

Query: 377 EAEWSVWGALLNACRIHRNDEMFDRIR----QDLVNKKGVSVGTFALMSNTFAGADRWED 432
           E +    GA  +     + + +    R    + L  +       + LMS + A A RW+D
Sbjct: 301 ECDQQALGAYCSHASASKANGVVAGERFLWKRFLAGEVAAERDAYVLMSKSLADAGRWDD 360

Query: 433 TNKIRDEIRRMGLKKKTGCSWIEV 456
               R+      + K   C+WI+V
Sbjct: 361 VCSARERAAATRIDKTAACTWIQV 384



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 113/221 (51%), Gaps = 7/221 (3%)

Query: 6   SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLH--DIFIQNSLLHFYVTVKDIFS 63
           ++ N  T    L AC+          IH   +  G     +  + N++L  Y     + S
Sbjct: 27  AAPNALTLASVLPACARLRSLGLGRAIHGFWLRRGGGPGANPIVDNAVLDVYAKCGALRS 86

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACS 119
           A ++F+ +   DV +WT +  GL++ G  ++A+ +F  +      +PN  TLVSVL A +
Sbjct: 87  ARRLFDGMPERDVFAWTAMAWGLARGGSPQDAVAVFRAMLSDGGARPNEATLVSVLHAVA 146

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
           S  +   GK +H+++L+       ++ NA++D Y +CG       +F  +P +++VSW T
Sbjct: 147 STGALACGKLLHSYALKRGLGGEQVVGNALVDAYAKCGEARLAFQVFDLLPDKDLVSWAT 206

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
           ++   A  G C+EA+ +F  M + +   P++A  +++L AC
Sbjct: 207 VMRAMAVHGRCREALQLFSMMLR-QGVRPDDAVFLSLLYAC 246



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 12/147 (8%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           +H++ ++ G   +  + N+L+  Y    +   A Q+F+ +   D+VSW T++  ++  G 
Sbjct: 157 LHSYALKRGLGGEQVVGNALVDAYAKCGEARLAFQVFDLLPDKDLVSWATVMRAMAVHGR 216

Query: 92  HKEAIDMFCGI---DVKPNANTLVSVLSACS-----SLVSHKLGKAIHAHSLRNLNENNI 143
            +EA+ +F  +    V+P+    +S+L AC          H L      + +    E+  
Sbjct: 217 CREALQLFSMMLRQGVRPDDAVFLSLLYACCHAGQVDQTLHLLDAMGRIYGIAPQKEHY- 275

Query: 144 ILDNAILDFYIRCGSLASCGYLFVKMP 170
                 LD   R G L   G +F +MP
Sbjct: 276 ---TCALDACGRAGRLDGVGEIFRRMP 299


>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
          Length = 576

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 166/482 (34%), Positives = 268/482 (55%), Gaps = 41/482 (8%)

Query: 11  YTFTQALKACS-LAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN 69
           Y     LK CS L H HQ     H  ++  G   D  + +  +    ++     +H IF 
Sbjct: 42  YHLLSLLKQCSNLKHLHQ----THCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFT 97

Query: 70  SVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKL 126
               PD+  + TII  LS      EAI ++  I   D++ +  +L  VL A   L++  +
Sbjct: 98  HKTRPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHV 157

Query: 127 GKAIHAHSLRN---------------------LNENNIILD----------NAILDFYIR 155
           G+ IH  ++                       ++E   + D          NA++  Y +
Sbjct: 158 GRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAK 217

Query: 156 CGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVN 215
            G + +  +LF +MP+RNV+SWT +I GYA+     EA+++F+ M+  +E EP+E  ++ 
Sbjct: 218 VGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQ-LEEVEPDEIAMLA 276

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
            LSAC+ + AL  G+++H+YI  ++ LS    + NA+I+MY KCG +  A++VF  + +K
Sbjct: 277 ALSACAHLGALELGEWIHNYID-KHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHK 335

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILF 335
             I+W+++I GLA++G GR+AL++FS M  N + P+++TF+A++SAC H GLV+ G   F
Sbjct: 336 SVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYF 395

Query: 336 KAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN 395
           K M T Y I P++QHY C++D+ GRAG L+EA+  +R MP EA   +WG+LL A RIH +
Sbjct: 396 KCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGD 455

Query: 396 DEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
            E+  +  Q L+  +  + G + L+SN +A   +W +   +R  +R  G+KK  G S IE
Sbjct: 456 AELGKQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIE 515

Query: 456 VN 457
           VN
Sbjct: 516 VN 517


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 145/430 (33%), Positives = 252/430 (58%), Gaps = 6/430 (1%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           +IH+ VI+   + ++F+ N+LL FY     +  A ++F+ +   D VS+  IISG +  G
Sbjct: 271 QIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDG 330

Query: 91  FHKEAIDMFCGIDVKP---NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
            HK A D+F  +             ++LS  S+ +  ++G+ IHA ++    ++ I++ N
Sbjct: 331 KHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGN 390

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           +++D Y +CG       +F  +  R+ V WT MI  Y ++GF +E + +F +M +     
Sbjct: 391 SLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQAS-VI 449

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
            ++AT  ++L A +SI++LS GK +HS+I  +     +   G+A++++Y KCG +  A+Q
Sbjct: 450 ADQATFASLLRASASIASLSLGKQLHSFI-IKSGFMSNVFSGSALLDVYAKCGSIKDAVQ 508

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
            F  +  ++ +SW+ +IS  A NG     L+ F  M+++ + PD V+F+ ++SACSH GL
Sbjct: 509 TFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGL 568

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           V++GL  F +M+ +Y++ P+ +HYA VVDM  R+G   EAE  + EMPI+ +  +W ++L
Sbjct: 569 VEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVL 628

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGV-SVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446
           NACRIH+N E+  R    L N + +     +  MSN +A A +WE+ +K+   +R  G+K
Sbjct: 629 NACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVK 688

Query: 447 KKTGCSWIEV 456
           K    SW+E+
Sbjct: 689 KLPAYSWVEI 698



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 197/399 (49%), Gaps = 21/399 (5%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M  C +  ++ TF   L  C+      +  ++   +I+ G+   + + N+L+  Y     
Sbjct: 140 MQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNR 199

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           +  A Q+F  +   D VS+  +I+G SK G  ++A+++F  +    +KP   T  +VL A
Sbjct: 200 LDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCA 259

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
              L    LG+ IH+  ++     N+ + NA+LDFY +  S+     LF +MP+++ VS+
Sbjct: 260 NIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSY 319

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-I 236
             +I GYA  G  K A  +F+E++ T   +  +     +LS  S+      G+ +H+  I
Sbjct: 320 NVIISGYAWDGKHKYAFDLFRELQFTA-FDRKQFPFATMLSIASNTLDWEMGRQIHAQTI 378

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
            T  D  +  LVGN++++MY KCG    A  +F  L ++  + W+ +IS     G   + 
Sbjct: 379 VTTADSEI--LVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEG 436

Query: 297 LQLFSLMIINAVFPDDVTFIAL------ISACSHGGLVDQGLILFKAMSTVYEIVPQMQH 350
           LQLF+ M   +V  D  TF +L      I++ S G  +   +I    MS V+        
Sbjct: 437 LQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFS------- 489

Query: 351 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
            + ++D+Y + G +++A    +EMP +     W A+++A
Sbjct: 490 GSALLDVYAKCGSIKDAVQTFQEMP-DRNIVSWNAMISA 527



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 184/369 (49%), Gaps = 23/369 (6%)

Query: 49  NSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGID 103
           N ++  YV   ++  A ++F+ +V    V+WT +I G S+    KEA ++F     CG +
Sbjct: 87  NMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTE 146

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAI---HAHSLRNLNENNIILDNAILDFYIRCGSLA 160
             P+  T V++LS C+    H++G  I       ++   ++ +I+ N ++D Y +   L 
Sbjct: 147 --PDYVTFVTLLSGCN---GHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLD 201

Query: 161 SCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
               LF +MP+ + VS+  MI GY++ G  ++AV++F EM+ +   +P E T   VL A 
Sbjct: 202 LACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSG-LKPTEFTFAAVLCAN 260

Query: 221 SSISALSFGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS 279
             +  +  G+ +HS+ I T +  +V   V NA+++ Y K   V  A ++F+ +  +D +S
Sbjct: 261 IGLDDIVLGQQIHSFVIKTNFVWNV--FVSNALLDFYSKHDSVIDARKLFDEMPEQDGVS 318

Query: 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMS 339
           ++ +ISG A +G  + A  LF  +   A       F  ++S  S+    + G  +  A +
Sbjct: 319 YNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQI-HAQT 377

Query: 340 TVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA----CRIHRN 395
            V     ++     +VDMY + G  EEAE     +   +    W A+++A          
Sbjct: 378 IVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVP-WTAMISAYVQKGFYEEG 436

Query: 396 DEMFDRIRQ 404
            ++F+++RQ
Sbjct: 437 LQLFNKMRQ 445



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 7/207 (3%)

Query: 125 KLGKAIHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
           K G+   A  L   +   N +  N ++  Y++ G+L     LF  M +R  V+WT +IGG
Sbjct: 64  KNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGG 123

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDL 242
           Y++    KEA  +F +M++    EP+  T V +LS C+     +    V +  I   YD 
Sbjct: 124 YSQLNQFKEAFELFVQMQRCG-TEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDS 182

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
            +  +VGN +++ Y K   + +A Q+F  +   D +S++ +I+G + +G   +A+ LF  
Sbjct: 183 RL--IVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVE 240

Query: 303 MIINAVFPDDVTFIALISACSHGGLVD 329
           M  + + P + TF A++  C++ GL D
Sbjct: 241 MQNSGLKPTEFTFAAVL--CANIGLDD 265



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 97/211 (45%), Gaps = 14/211 (6%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +  TF   L+A +         ++H+ +I+ G + ++F  ++LL  Y     I  A Q F
Sbjct: 451 DQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTF 510

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSAC--SSLVS 123
             +   ++VSW  +IS  ++ G  +  +  F  +    ++P++ + + VLSAC  S LV 
Sbjct: 511 QEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVE 570

Query: 124 HKLGKAIHAHSLRNLNENNIILDN--AILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTM 180
             L    H +S+  + + +   ++  +++D   R G       L  +MP   + + W+++
Sbjct: 571 EGLW---HFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSV 627

Query: 181 IGG---YAERGFCKEAVSVFQEMEKTKEAEP 208
           +     +  +   + A      ME+ ++A P
Sbjct: 628 LNACRIHKNQELARRAADQLFNMEELRDAAP 658


>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 154/481 (32%), Positives = 272/481 (56%), Gaps = 40/481 (8%)

Query: 4   CPSSYNHYTFTQALKACS-----------LAHPHQKALEIHAHVIEYGHLHDIFIQNSLL 52
           C S  +H+T+    K C+           L H  +  LE+ +HV            N+ +
Sbjct: 75  CESRPDHFTYPVLFKVCADLRLNSLGHMILGHVFKLRLELVSHV-----------HNASI 123

Query: 53  HFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNAN 109
           H + +  ++ +A ++F+     D+VSW  +I+G  K G  ++AI+++  ++   VKP+  
Sbjct: 124 HMFASCGEMENARKVFDESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVMESEGVKPDDV 183

Query: 110 TLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKM 169
           T++ ++S+C+ L     GK  + +   N     I L NA++D + +CG +     +F  +
Sbjct: 184 TMIGLVSSCAMLGDLNRGKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARRIFDNL 243

Query: 170 PKRNVVS-------------WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNV 216
            KR +VS             W  MIGG  +    ++A+++FQEM+ T   +P+E T+++ 
Sbjct: 244 EKRTIVSKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQ-TSNTDPDEITMIHC 302

Query: 217 LSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD 276
           LSACS + AL  G ++H YI  ++ LS++  +G ++++MY KCG++  A+ VF+ +  ++
Sbjct: 303 LSACSQLGALDVGIWIHRYIE-KHSLSLNVALGTSLVDMYAKCGNISEALCVFHGIQTRN 361

Query: 277 KISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFK 336
            ++++ +I GLA++G    A+  F+ MI   + PD++TFI L+SAC HGG++  G   F 
Sbjct: 362 SLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFS 421

Query: 337 AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND 396
            M + + + PQ++HY+ +VD+ GRAGLLEEA+  +  MP+EA+ +VWGALL  CR+H N 
Sbjct: 422 QMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADKLMESMPMEADAAVWGALLFGCRMHGNV 481

Query: 397 EMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           ++ ++  + L+       G + L+   +  A+ WED  + R  +   G++K  GCS IEV
Sbjct: 482 KLGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEV 541

Query: 457 N 457
           N
Sbjct: 542 N 542



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 159/321 (49%), Gaps = 22/321 (6%)

Query: 66  QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI------DVKPNANTLVSVLSACS 119
           +I   +  P+  SW   I G S+    K+A+  +  +      + +P+  T   +   C+
Sbjct: 33  KILKGIENPNAFSWNVTIRGFSESENPKDAVLAYKQMLRRGCCESRPDHFTYPVLFKVCA 92

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
            L  + LG  I  H  +   E    + NA +  +  CG + +   +F + P R++VSW  
Sbjct: 93  DLRLNSLGHMILGHVFKLRLELVSHVHNASIHMFASCGEMENARKVFDESPVRDLVSWNC 152

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           +I GY + G  ++A+ V++ ME ++  +P++ T++ ++S+C+ +  L+ GK  + Y+   
Sbjct: 153 LINGYKKIGEGEKAIEVYKVME-SEGVKPDDVTMIGLVSSCAMLGDLNRGKEFYEYVKAN 211

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-------------KDKISWSTVISG 286
             L ++  + NA+++M+ KCGD+  A ++F+ L               KD + W+ +I G
Sbjct: 212 -GLRMTIPLANALMDMFSKCGDIHEARRIFDNLEKRTIVSKLFDDMEEKDVVMWNAMIGG 270

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 346
                  + AL LF  M  +   PD++T I  +SACS  G +D G+ + + +   + +  
Sbjct: 271 SVQAKRSQDALALFQEMQTSNTDPDEITMIHCLSACSQLGALDVGIWIHRYIEK-HSLSL 329

Query: 347 QMQHYACVVDMYGRAGLLEEA 367
            +     +VDMY + G + EA
Sbjct: 330 NVALGTSLVDMYAKCGNISEA 350


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 145/430 (33%), Positives = 252/430 (58%), Gaps = 6/430 (1%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           +IH+ VI+   + ++F+ N+LL FY     +  A ++F+ +   D VS+  IISG +  G
Sbjct: 231 QIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDG 290

Query: 91  FHKEAIDMFCGIDVKP---NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
            HK A D+F  +             ++LS  S+ +  ++G+ IHA ++    ++ I++ N
Sbjct: 291 KHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGN 350

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           +++D Y +CG       +F  +  R+ V WT MI  Y ++GF +E + +F +M +     
Sbjct: 351 SLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQAS-VI 409

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
            ++AT  ++L A +SI++LS GK +HS+I  +     +   G+A++++Y KCG +  A+Q
Sbjct: 410 ADQATFASLLRASASIASLSLGKQLHSFI-IKSGFMSNVFSGSALLDVYAKCGSIKDAVQ 468

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
            F  +  ++ +SW+ +IS  A NG     L+ F  M+++ + PD V+F+ ++SACSH GL
Sbjct: 469 TFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGL 528

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           V++GL  F +M+ +Y++ P+ +HYA VVDM  R+G   EAE  + EMPI+ +  +W ++L
Sbjct: 529 VEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVL 588

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGV-SVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446
           NACRIH+N E+  R    L N + +     +  MSN +A A +WE+ +K+   +R  G+K
Sbjct: 589 NACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVK 648

Query: 447 KKTGCSWIEV 456
           K    SW+E+
Sbjct: 649 KLPAYSWVEI 658



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 146/309 (47%), Gaps = 9/309 (2%)

Query: 10  HYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN 69
            + F   L   S     +   +IHA  I      +I + NSL+  Y        A  IF 
Sbjct: 311 QFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFT 370

Query: 70  SVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKL 126
           ++     V WT +IS   + GF++E + +F  +    V  +  T  S+L A +S+ S  L
Sbjct: 371 NLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSL 430

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           GK +H+  +++   +N+   +A+LD Y +CGS+      F +MP RN+VSW  MI  YA+
Sbjct: 431 GKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQ 490

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
            G  +  +  F+EM  +   +P+  + + VLSACS    +  G +  + ++  Y L    
Sbjct: 491 NGEAEATLKSFKEMVLSG-LQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRR 549

Query: 247 LVGNAVINMYVKCGDVGIAIQVF-NMLAYKDKISWSTVISGLAMNG----CGRQALQLFS 301
               +V++M  + G    A ++   M    D+I WS+V++   ++       R A QLF+
Sbjct: 550 EHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFN 609

Query: 302 LMIINAVFP 310
           +  +    P
Sbjct: 610 MEELRDAAP 618



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 180/396 (45%), Gaps = 50/396 (12%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M  C +  ++ TF   L  C+      +  ++   +I+ G+   + + N+L+  Y     
Sbjct: 135 MQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNR 194

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSS 120
           +  A Q+F  +  P++ S+T                                +VL A   
Sbjct: 195 LDLACQLFKEM--PEIDSFT------------------------------FAAVLCANIG 222

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           L    LG+ IH+  ++     N+ + NA+LDFY +  S+     LF +MP+++ VS+  +
Sbjct: 223 LDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVI 282

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTR 239
           I GYA  G  K A  +F+E++ T   +  +     +LS  S+      G+ +H+  I T 
Sbjct: 283 ISGYAWDGKHKYAFDLFRELQFTA-FDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTT 341

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
            D  +  LVGN++++MY KCG    A  +F  L ++  + W+ +IS     G   + LQL
Sbjct: 342 ADSEI--LVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQL 399

Query: 300 FSLMIINAVFPDDVTFIAL------ISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
           F+ M   +V  D  TF +L      I++ S G  +   +I    MS V+         + 
Sbjct: 400 FNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFS-------GSA 452

Query: 354 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           ++D+Y + G +++A    +EMP +     W A+++A
Sbjct: 453 LLDVYAKCGSIKDAVQTFQEMP-DRNIVSWNAMISA 487



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 5/162 (3%)

Query: 125 KLGKAIHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
           K G+   A  L   +   N +  N ++  Y++ G+L     LF  M +R  V+WT +IGG
Sbjct: 59  KNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGG 118

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDL 242
           Y++    KEA  +F +M++    EP+  T V +LS C+     +    V +  I   YD 
Sbjct: 119 YSQLNQFKEAFELFVQMQRCG-TEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDS 177

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVI 284
            +  +VGN +++ Y K   + +A Q+F  +   D  +++ V+
Sbjct: 178 RL--IVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVL 217



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 86/382 (22%), Positives = 162/382 (42%), Gaps = 19/382 (4%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           I A +++ G   D    N  +  ++   ++  A Q+F  +   + VS   +ISG  K G 
Sbjct: 34  IDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGN 93

Query: 92  HKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAIL- 150
             EA  +F G+ V+  A T   ++   S L   K    +     R   E + +    +L 
Sbjct: 94  LGEARKLFDGM-VERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLS 152

Query: 151 --DFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
             + +     +       +K+     ++   T++  Y +      A  +F+EM      E
Sbjct: 153 GCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEM-----PE 207

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
            +  T   VL A   +  +  G+ +HS+ I T +  +V   V NA+++ Y K   V  A 
Sbjct: 208 IDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNV--FVSNALLDFYSKHDSVIDAR 265

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
           ++F+ +  +D +S++ +ISG A +G  + A  LF  +   A       F  ++S  S+  
Sbjct: 266 KLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTL 325

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 386
             + G  +  A + V     ++     +VDMY + G  EEAE     +   +    W A+
Sbjct: 326 DWEMGRQI-HAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVP-WTAM 383

Query: 387 LNACR----IHRNDEMFDRIRQ 404
           ++A           ++F+++RQ
Sbjct: 384 ISAYVQKGFYEEGLQLFNKMRQ 405


>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570 [Vitis vinifera]
          Length = 561

 Score =  294 bits (753), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 152/450 (33%), Positives = 261/450 (58%), Gaps = 14/450 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +T+   +KACS     ++ +  H   +  G   D+F+  SL+  Y    +I  A ++F
Sbjct: 122 DKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVF 181

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNA---NTLVSVLSACSSLVSHK 125
           + +   +VVSWT +I+G +      EA  +F  +  K NA   N ++S    C  L S +
Sbjct: 182 DEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEK-NAVSWNAIISGYVKCGDLRSAR 240

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
                       +   N++    ++D Y + G +AS  ++F + P+R+VV+W+ +I GY 
Sbjct: 241 -------KMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYV 293

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSV 244
           + G   EAV +F EM  ++  +P+E  +V+++SACS + +L   K+V  Y+  +  D+  
Sbjct: 294 QNGQPNEAVKIFLEM-CSRNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHR 352

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           ++++  A+I+M  KCG +  A ++F  +  +D IS+ +++ GL+++GCG QA+ LFS M+
Sbjct: 353 AHVIA-ALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRML 411

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
              + PDDV F  +++ACS  GLVD+G   F++M T Y IVP   HYAC+VD+ GRAG L
Sbjct: 412 NEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRL 471

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           +EA   ++ MP+E     WGALL AC++H + E+ + +   L   +  + G + L+SN +
Sbjct: 472 KEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIY 531

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           A A++W D + +R+++R  G++K  GCSWI
Sbjct: 532 AAAEQWLDVSLLRNKMRERGIRKIPGCSWI 561



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 168/367 (45%), Gaps = 16/367 (4%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           + +  LKAC+     +   ++HA +I  G   D FI +  L    ++ +      +FN V
Sbjct: 27  SISTLLKACTTTSTLE---QVHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNGV 83

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
             P  V W T I G S+       + +F  +   D  P+  T  S++ ACS +   K G 
Sbjct: 84  SSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGV 143

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
           A H  ++R     ++ +  +++D Y +CG +     +F +M +RNVVSWT MI GYA   
Sbjct: 144 AFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFS 203

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
              EA  +F EM      E N  +   ++S       L   + +   +  R  +S + + 
Sbjct: 204 DLVEARKLFDEM-----PEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTM- 257

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
               I+ Y K GD+  A  VF     +D ++WS +ISG   NG   +A+++F  M    V
Sbjct: 258 ----IDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNV 313

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD+   ++L+SACS  G ++    +   +      V +    A ++DM  + G ++ A 
Sbjct: 314 KPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRAT 373

Query: 369 AFIREMP 375
               EMP
Sbjct: 374 KLFEEMP 380


>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
           [Vitis vinifera]
          Length = 576

 Score =  294 bits (753), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 166/482 (34%), Positives = 268/482 (55%), Gaps = 41/482 (8%)

Query: 11  YTFTQALKACS-LAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN 69
           Y     LK CS L H HQ     H  ++  G   D  + +  +    ++     +H IF 
Sbjct: 42  YHLLSLLKQCSNLKHLHQ----THCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFT 97

Query: 70  SVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKL 126
               PD+  + TII  LS      EAI ++  I   D++ +  +L  VL A   L++  +
Sbjct: 98  HKTRPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHV 157

Query: 127 GKAIHAHSLRN---------------------LNENNIILD----------NAILDFYIR 155
           G+ IH  ++                       ++E   + D          NA++  Y +
Sbjct: 158 GRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAK 217

Query: 156 CGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVN 215
            G + +  +LF +MP+RNV+SWT +I GYA+     EA+++F+ M+  +E EP+E  ++ 
Sbjct: 218 VGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQ-LEEVEPDEIAMLA 276

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
            LSAC+ + AL  G+++H+YI  ++ LS    + NA+I+MY KCG +  A++VF  + +K
Sbjct: 277 ALSACAHLGALELGEWIHNYID-KHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHK 335

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILF 335
             I+W+++I GLA++G GR+AL++FS M  N + P+++TF+A++SAC H GLV+ G   F
Sbjct: 336 SVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYF 395

Query: 336 KAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN 395
           K M T Y I P++QHY C++D+ GRAG L+EA+  +R MP EA   +WG+LL A RIH +
Sbjct: 396 KCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGD 455

Query: 396 DEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
            E+  +  Q L+  +  + G + L+SN +A   +W +   +R  +R  G+KK  G S IE
Sbjct: 456 AELGKQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIE 515

Query: 456 VN 457
           VN
Sbjct: 516 VN 517


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  294 bits (753), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 164/466 (35%), Positives = 265/466 (56%), Gaps = 9/466 (1%)

Query: 1   MLSCPSSYNHYTFTQALKAC-SLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK 59
           ML+   S N +TF  A K+C SL+ P   + ++H HVI+ G   + F+Q SL+  Y    
Sbjct: 47  MLASGDSPNAFTFPFAFKSCASLSLPLAGS-QLHGHVIKTGCEPEPFVQTSLISMYCKCS 105

Query: 60  DIFSAHQIFNSVVFPD--VVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSV 114
            I SA ++F+         V +  +I+G S      +A+ +F  +    V  NA T++ +
Sbjct: 106 TIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGL 165

Query: 115 LSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV 174
           +  C+  +    G ++HA S+R   + ++ + N +L  Y+RCGS+     LF  MP++ +
Sbjct: 166 IPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGL 225

Query: 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
           ++W  MI GYA+ G     + ++++ME T    P+  TLV VLS+C+ + A + G+ V  
Sbjct: 226 ITWNAMISGYAQNGLAGHVLDLYRKMEFTGIV-PDPVTLVGVLSSCAHLGAHAAGREVEQ 284

Query: 235 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
            I        +  + NA+INMY +CG++  A  +F+ +  K+ ISW+ +I+G  M+G G 
Sbjct: 285 RIELS-GFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGE 343

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
            A+QLF  MI +   PD   F++++SACSH GL ++GL  F AM   Y + P  +HY+CV
Sbjct: 344 LAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCV 403

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414
           VD+ GRAG LEEA   I  M +E + +VWGALL AC+IHRN E+ +   + ++  +  ++
Sbjct: 404 VDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIEFEPTNI 463

Query: 415 GTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           G + L+SN F+ A   E   ++R  +R   LKK+ GCS++E    I
Sbjct: 464 GYYVLLSNIFSEAGNMEGILRVRVMMRERKLKKEPGCSYVEYQGRI 509


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  294 bits (753), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 160/448 (35%), Positives = 260/448 (58%), Gaps = 10/448 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           +F+  L++C+++   Q     H  +++ G  +D+ +Q  LL FY  V D+  A ++F  +
Sbjct: 12  SFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCAKRVFMGM 71

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIH 131
              DVV+   +IS LSK G+ +EA ++F  +  + + +    +   C      KLG    
Sbjct: 72  PRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYC------KLGDINS 125

Query: 132 AHSLRNLNE-NNIILDNAILDFYIRCGSLASCGYLFVKM-PKRNVVSWTTMIGGYAERGF 189
           A  + + N   +++  NAI+D Y +   L +   LF+ M   RN V+W TMI  Y + G 
Sbjct: 126 ARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGE 185

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
              A+S+FQ+M+ ++  +P E T+V++LSAC+ + AL  G+++H YI T+  L +  ++G
Sbjct: 186 FGTAISMFQQMQ-SENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKR-LKIDVVLG 243

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
           NA+I+MY KCG +  AI VF+ L+ K+   W+++I GL MNG G +A+  F +M    + 
Sbjct: 244 NALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIK 303

Query: 310 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEA 369
           PD VTF+ ++S CSH GL+  G   F  M  VY + P ++HY C+VD+ GRAG L+EA  
Sbjct: 304 PDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALE 363

Query: 370 FIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADR 429
            IR MP++    V G+LL AC+IH++ ++ +++ Q L+       G +  +SN +A   R
Sbjct: 364 LIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSR 423

Query: 430 WEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           W+D N  R  + + G+ K  GCS IEVN
Sbjct: 424 WDDVNTCRKLMIKRGVHKTPGCSSIEVN 451



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 139/268 (51%), Gaps = 16/268 (5%)

Query: 103 DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC 162
           DV P+  +   +L +C+     +LG+A H   ++   E ++IL   +LDFY + G L   
Sbjct: 5   DVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCA 64

Query: 163 GYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS 222
             +F+ MP+R+VV+   MI   ++ G+ +EA ++F  M      E N  +  ++++    
Sbjct: 65  KRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNM-----TERNSCSWNSMITCYCK 119

Query: 223 ISALSFGKYVHSYISTRYDLS-VSNLVG-NAVINMYVKCGDVGIAIQVFNML-AYKDKIS 279
           +  ++  + +       +D + V ++V  NA+I+ Y K   +  A ++F ++ + ++ ++
Sbjct: 120 LGDINSARLM-------FDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVT 172

Query: 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMS 339
           W+T+IS     G    A+ +F  M    V P +VT ++L+SAC+H G +D G  +   + 
Sbjct: 173 WNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIR 232

Query: 340 TVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           T    +  +   A ++DMY + G LE A
Sbjct: 233 TKRLKIDVVLGNA-LIDMYCKCGALEAA 259


>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
 gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 596

 Score =  294 bits (753), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 157/453 (34%), Positives = 260/453 (57%), Gaps = 7/453 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +TF   LKA           + HAH++++G   D F++NSL+  Y +      A ++F
Sbjct: 103 SRHTFPPLLKAV-FKLRDSNPFQFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLF 161

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           +     DVV+WT +I G  + G   EA+  F  +    V  N  T+VSVL A   +   +
Sbjct: 162 DGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVR 221

Query: 126 LGKAIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
            G+++H   L     + ++ + ++++D Y +C        +F +MP RNVV+WT +I GY
Sbjct: 222 FGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGY 281

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
            +     + + VF+EM K+  A PNE TL +VLSAC+ + AL  G+ VH Y+  +  + +
Sbjct: 282 VQSRCFDKGMLVFEEMLKSDVA-PNEKTLSSVLSACAHVGALHRGRRVHCYM-IKNSIEI 339

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           +   G  +I++YVKCG +  AI VF  L  K+  +W+ +I+G A +G  R A  LF  M+
Sbjct: 340 NTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTML 399

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
            + V P++VTF+A++SAC+HGGLV++G  LF +M   + + P+  HYAC+VD++GR GLL
Sbjct: 400 SSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLL 459

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           EEA+A I  MP+E    VWGAL  +C +H++ E+       ++  +    G + L++N +
Sbjct: 460 EEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLY 519

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           + +  W++  ++R +++   + K  G SWIEV 
Sbjct: 520 SESQNWDEVARVRKQMKDQQVVKSPGFSWIEVK 552



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 7/188 (3%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    + N  T +  L AC+      +   +H ++I+     +     +L+  YV    
Sbjct: 297 MLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGC 356

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           +  A  +F  +   +V +WT +I+G +  G+ ++A D+F  +    V PN  T ++VLSA
Sbjct: 357 LEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSA 416

Query: 118 CSSLVSHKLGKAIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMPKR--NV 174
           C+     + G+ +        N E        ++D + R G L     L  +MP    NV
Sbjct: 417 CAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNV 476

Query: 175 VSWTTMIG 182
           V W  + G
Sbjct: 477 V-WGALFG 483


>gi|449458231|ref|XP_004146851.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Cucumis sativus]
 gi|449522932|ref|XP_004168479.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Cucumis sativus]
          Length = 705

 Score =  294 bits (753), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 168/528 (31%), Positives = 268/528 (50%), Gaps = 79/528 (14%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +TF   L+A S          +H HV+++G  + + + N L+  Y  ++ +  A ++F+ 
Sbjct: 140 FTFPLLLRASSNLGAFNMCKNLHCHVVQFGFQNHLHVGNELIGMYAKLERMDDARKVFDK 199

Query: 71  VVFPDVVSWTTIISGLS-----------------------------------KCGFHKEA 95
           +    VVSW T++SG +                                   +CG  +E 
Sbjct: 200 MRIKSVVSWNTMVSGYAYNYDVNGASRMFHQMELEGVEPNPVTWTSLLSSHARCGHLEET 259

Query: 96  IDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDF 152
           + +FC + +K   P A  L  VLS C+ L +   G+ IH + ++    + +   NA++  
Sbjct: 260 MVLFCKMRMKGVGPTAEMLAVVLSVCADLATLNSGQMIHGYMVKGGFNDYLFAKNALITL 319

Query: 153 YIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK---EAEPN 209
           Y + G +     LF +M  +N+VSW  +I  +AE G   +A+ +  ++EK +   E +PN
Sbjct: 320 YGKGGGVGDAEKLFHEMKVKNLVSWNALISSFAESGVYDKALELLSQLEKMEAYPEMKPN 379

Query: 210 -----------------------------------EATLVNVLSACSSISALSFGKYVHS 234
                                                T+ +VLS C+ ++AL+ G+ +H 
Sbjct: 380 VITWSAIICGFASKGLGEESLEVFRKMQLANVKANSVTIASVLSICAMLAALNLGREMHG 439

Query: 235 Y-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG 293
           + I  R D +V  LVGN +INMY KCG       VF  L  +D ISW+++I+G   +G G
Sbjct: 440 HVIRARMDDNV--LVGNGLINMYTKCGSFKPGFMVFEKLENRDSISWNSMIAGYGTHGLG 497

Query: 294 RQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
           + AL  F+ MI +   PD VTFIA +SACSH GLV +G  LF  M   ++I P+++HYAC
Sbjct: 498 KDALATFNHMIKSGYRPDGVTFIAALSACSHAGLVAEGHWLFSQMRQNFKIEPEIEHYAC 557

Query: 354 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVS 413
           +VD+ GRAGL+EEA   I+ MP+E    +W +LLN+CR+H++ ++ +     + N     
Sbjct: 558 MVDLLGRAGLVEEASNIIKGMPMEPNAYIWSSLLNSCRMHKDTDLAEEAAAKISNLNSKI 617

Query: 414 VGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
            G+  L+SN FA + RWED+ ++R   R  GLKK  G SWIEV   ++
Sbjct: 618 TGSHMLLSNIFAASCRWEDSARVRISARAKGLKKVPGWSWIEVKKKVY 665



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 164/370 (44%), Gaps = 48/370 (12%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           F   L+ C+     Q + ++H+  +  G     F+   L+  Y     +  A ++F S  
Sbjct: 41  FDHLLRQCNGI---QHSKQVHSATVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAP 97

Query: 73  FP---DVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKL 126
           F    + + W +II      G+  EA+ ++  +    V  +  T   +L A S+L +  +
Sbjct: 98  FECYSNFLLWNSIIRANVYHGYCIEALQLYGKMRNYGVLGDGFTFPLLLRASSNLGAFNM 157

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
            K +H H ++   +N++ + N ++  Y +   +     +F KM  ++VVSW TM+ GYA 
Sbjct: 158 CKNLHCHVVQFGFQNHLHVGNELIGMYAKLERMDDARKVFDKMRIKSVVSWNTMVSGYAY 217

Query: 187 RGFCKEAVSVFQEME----------------------------------KTKEAEPNEAT 212
                 A  +F +ME                                  + K   P    
Sbjct: 218 NYDVNGASRMFHQMELEGVEPNPVTWTSLLSSHARCGHLEETMVLFCKMRMKGVGPTAEM 277

Query: 213 LVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 272
           L  VLS C+ ++ L+ G+ +H Y+  +   +      NA+I +Y K G VG A ++F+ +
Sbjct: 278 LAVVLSVCADLATLNSGQMIHGYM-VKGGFNDYLFAKNALITLYGKGGGVGDAEKLFHEM 336

Query: 273 AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD----VTFIALISACSHGGLV 328
             K+ +SW+ +IS  A +G   +AL+L S +     +P+     +T+ A+I   +  GL 
Sbjct: 337 KVKNLVSWNALISSFAESGVYDKALELLSQLEKMEAYPEMKPNVITWSAIICGFASKGLG 396

Query: 329 DQGLILFKAM 338
           ++ L +F+ M
Sbjct: 397 EESLEVFRKM 406



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 127/278 (45%), Gaps = 40/278 (14%)

Query: 149 ILDFYIRCGSLASCGYLFVKMP---KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
           ++  Y R G ++    +F   P     N + W ++I      G+C EA+ ++ +M +   
Sbjct: 76  LVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIRANVYHGYCIEALQLYGKM-RNYG 134

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
              +  T   +L A S++ A +  K +H ++  ++       VGN +I MY K   +  A
Sbjct: 135 VLGDGFTFPLLLRASSNLGAFNMCKNLHCHV-VQFGFQNHLHVGNELIGMYAKLERMDDA 193

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
            +VF+ +  K  +SW+T++SG A N     A ++F  M +  V P+ VT+ +L+S+ +  
Sbjct: 194 RKVFDKMRIKSVVSWNTMVSGYAYNYDVNGASRMFHQMELEGVEPNPVTWTSLLSSHARC 253

Query: 326 GLVDQGLILF-----KAMSTVYEIVP---------------QMQHYACV----------- 354
           G +++ ++LF     K +    E++                QM H   V           
Sbjct: 254 GHLEETMVLFCKMRMKGVGPTAEMLAVVLSVCADLATLNSGQMIHGYMVKGGFNDYLFAK 313

Query: 355 ---VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
              + +YG+ G + +AE    EM ++   S W AL+++
Sbjct: 314 NALITLYGKGGGVGDAEKLFHEMKVKNLVS-WNALISS 350



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 5/178 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L  C++        E+H HVI      ++ + N L++ Y           +F
Sbjct: 414 NSVTIASVLSICAMLAALNLGREMHGHVIRARMDDNVLVGNGLINMYTKCGSFKPGFMVF 473

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
             +   D +SW ++I+G    G  K+A+  F  +     +P+  T ++ LSACS      
Sbjct: 474 EKLENRDSISWNSMIAGYGTHGLGKDALATFNHMIKSGYRPDGVTFIAALSACSHAGLVA 533

Query: 126 LGKAIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMI 181
            G  + +   +N   E  I     ++D   R G +     +   MP + N   W++++
Sbjct: 534 EGHWLFSQMRQNFKIEPEIEHYACMVDLLGRAGLVEEASNIIKGMPMEPNAYIWSSLL 591


>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Vitis vinifera]
          Length = 654

 Score =  294 bits (753), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 165/485 (34%), Positives = 270/485 (55%), Gaps = 42/485 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  TF   L+A        + ++IH H I  G  +  ++QN+L+  Y+  + +  A+Q+F
Sbjct: 129 NRSTFLFLLQASKFL---SQVMQIHCHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQVF 185

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHK 125
             +  PD VS+  +I G +K G + EA+       G+ +KP+  T++ +L  C  L   +
Sbjct: 186 QQMAAPDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQ 245

Query: 126 LGKAIHAHSLRN--LNENNIILDNAILDFYIRCGSL------------------------ 159
           LGK++HA   R   +  +N+IL+NA+LD Y++C  L                        
Sbjct: 246 LGKSVHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAG 305

Query: 160 -ASCGYL------FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEAT 212
            A  G L      F  MP R++VSW ++I GYA++G C     +F+ M   +   P+  T
Sbjct: 306 YAKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGDCLMVQRLFENM-VAENIWPDFVT 364

Query: 213 LVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 272
           ++N++SA + I AL  G+++H ++  R  + +   +G+A I+MY KCG +  A  VF  +
Sbjct: 365 IINLVSAAAEIGALHHGRWIHGWV-VRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREV 423

Query: 273 AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL 332
             KD   W+T+I+G A +G G +ALQLF  M    V P+ VTF+A+++ACSH G V QGL
Sbjct: 424 TEKDVTVWTTMITGFAFHGYGSKALQLFYEMQ-EYVMPNQVTFVAVLTACSHSGFVSQGL 482

Query: 333 ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI 392
            +F +M   Y I P ++HY C+VD+ GR+G   E +  I  MP++   S+WGA+L+ACR 
Sbjct: 483 RIFNSMKERYGIEPGVEHYGCLVDLLGRSGRFSEVKDVIEMMPMKPSRSIWGAVLSACRA 542

Query: 393 HRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCS 452
           + N E+ +   ++L+  +    G + L+SN +A + RW+ ++KIR+ +   G+KK  GCS
Sbjct: 543 YGNIEIAEIAGKELLKLEPEKEGGYVLLSNIYATSGRWKHSDKIREIMESRGVKKTAGCS 602

Query: 453 WIEVN 457
            + V+
Sbjct: 603 SVVVD 607


>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 552

 Score =  294 bits (753), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 166/482 (34%), Positives = 269/482 (55%), Gaps = 36/482 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +H TF    K+C+     ++   +  H ++ G     F+ N+L+H YV   ++  A ++F
Sbjct: 71  SHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFGELAMAQKVF 130

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHK 125
           + ++  DVVSW +II G  +    K+ +D+F     I+V+ ++ T++  +SA   L   +
Sbjct: 131 DGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWE 190

Query: 126 LG----KAIHAHSL---------------------------RNLNENNIILDNAILDFYI 154
           +G    K I  H +                             + E NI+  NA++  Y 
Sbjct: 191 MGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYA 250

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           + G+L +   LF +MP R+V+SWT+MI GY+      EAV +FQEM      +P+E T+ 
Sbjct: 251 KVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEM-MVSMVKPDEITVA 309

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
             LSAC+ + +L  G+ VH YI  ++D+     VGN++I+MY KCG V  A+QVFN +  
Sbjct: 310 TALSACAHLGSLDAGEAVHDYIR-KHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKT 368

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           +D +SW+++ISGLA+NG    AL +F  M+   + P   TF+ ++ AC+H GLVD+G+  
Sbjct: 369 RDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEH 428

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           FK+M   Y + P+M+HY CVVD+  R+G L+ A  FI++MPI  +  +W  LL+AC++H 
Sbjct: 429 FKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHG 488

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           N  + + + + L+     + G + L S+T+AG+DRW+D  KIR  +    L+K    S I
Sbjct: 489 NLVLAEIVSKKLLVLDPSNNGNYVLSSSTYAGSDRWDDVIKIRKLMEVTNLQKPCAYSSI 548

Query: 455 EV 456
           EV
Sbjct: 549 EV 550



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/448 (23%), Positives = 209/448 (46%), Gaps = 47/448 (10%)

Query: 41  HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC 100
           H+    I   + H+ ++ + +  AH +FN +  P ++ W  +I GLSK     +AI  + 
Sbjct: 2   HIDPSSISEVIKHYALSPQSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYN 61

Query: 101 GI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCG 157
            +    ++ +  T + +  +C+ +   + G+ +  HS++   E+   + NA++  Y+  G
Sbjct: 62  TMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFG 121

Query: 158 SLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVL 217
            LA    +F  M +R+VVSW ++I GY +    K+ + +F+EM+       +  T++  +
Sbjct: 122 ELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAI-NVRADSVTMMKAI 180

Query: 218 SACSSISALSFGKYVHSYISTR-----------------------------YDLSVSNLV 248
           SA   +S    G Y+  YI                                Y +   N+V
Sbjct: 181 SATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIV 240

Query: 249 G-NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
             NA+I  Y K G++  A ++FN +  +D ISW+++I G ++     +A++LF  M+++ 
Sbjct: 241 SWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSM 300

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           V PD++T    +SAC+H G +D G  +   +   ++I   +     ++DMY + G++E+A
Sbjct: 301 VKPDEITVATALSACAHLGSLDAGEAVHDYIRK-HDIKSDVFVGNSLIDMYCKCGVVEKA 359

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDR-IRQDLVNKKGVSVGTF----- 417
                +M      S W ++++   ++   E    +FD+ +++ +    G  VG       
Sbjct: 360 LQVFNDMKTRDSVS-WTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAH 418

Query: 418 -ALMSNTFAGADRWEDTNKIRDEIRRMG 444
             L+          E+T ++  E++  G
Sbjct: 419 VGLVDKGVEHFKSMENTYRLAPEMKHYG 446


>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
 gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
          Length = 655

 Score =  294 bits (752), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 166/482 (34%), Positives = 259/482 (53%), Gaps = 39/482 (8%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           T   A+KA + +    +A  IH    + G +   + + N+L+H Y +   +  A ++F+ 
Sbjct: 134 TIVFAVKAATTSSSPAEA--IHCVAFKRGFIGQSVLVGNALVHMYASSMSLPDARKLFDE 191

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK----PNANTLVSVLSACSSLVSHKL 126
           +   DVVSWTT++ G ++ G   EA  +FC + V     PN  TLV+  SA   +    L
Sbjct: 192 MADRDVVSWTTLVDGYARGGLPDEAWRVFCRMVVAGGGWPNEVTLVAAASAAGQIGLLGL 251

Query: 127 GKAIHAHSLRNLNENNIILDNAILDF-------------------------------YIR 155
           G+ +H   + +    ++ L+NA++D                                Y +
Sbjct: 252 GRMVHQCVVESGVRMSVNLENALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSAYAK 311

Query: 156 CGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVN 215
           CG L + G LF ++P RN VSW+ M+  Y++    +EA+ +F +M      EP +ATLV+
Sbjct: 312 CGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAG-VEPIDATLVS 370

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           VLSAC+ +  L  G+ ++      + + ++  + NA I+M+ KCGDVG A ++F  +  K
Sbjct: 371 VLSACAQLGCLDVGRCLYDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNMEDK 430

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILF 335
           + +SW+T+I   A++G   +AL LF       +FPD++T+I ++SACSH GLV +G   F
Sbjct: 431 NVVSWNTMIVAHALHGQSEEALHLFQKFKAIGIFPDEITYIGVLSACSHSGLVSEGRYHF 490

Query: 336 KAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN 395
           K M  VY I P+ +HYAC++D+ G+ GLLEEA    R MP+ A+ + WGALLNACR+H N
Sbjct: 491 KEMKIVYGIEPRAEHYACMIDLLGKVGLLEEAFEVARSMPVGADEAGWGALLNACRMHGN 550

Query: 396 DEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
            E+       LV       G + LMS  +A   +W     IR  +R  G+KK  GCS IE
Sbjct: 551 VEIGKCAADKLVGLDPSDSGIYVLMSQIYASKSKWGQVKMIRTVMRDRGVKKNPGCSSIE 610

Query: 456 VN 457
           V+
Sbjct: 611 VD 612


>gi|224145066|ref|XP_002325515.1| predicted protein [Populus trichocarpa]
 gi|222862390|gb|EEE99896.1| predicted protein [Populus trichocarpa]
          Length = 683

 Score =  294 bits (752), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 160/489 (32%), Positives = 265/489 (54%), Gaps = 44/489 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHV-IEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           +++T+   LKAC          E+H  +   YGH  ++++ NSL+  Y    ++ +A ++
Sbjct: 141 DNFTYPSVLKACGEKLDLDFGREVHESINAAYGHRWNLYVHNSLVSMYGKFGELDAARRL 200

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---------------------------- 99
           FN +   D VSW  IIS  +  G  KEA ++F                            
Sbjct: 201 FNQMPERDAVSWNGIISNYASRGLWKEAFELFEEMRLAGAEVNIITWNTIAGGCVQTRNF 260

Query: 100 ------------CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
                       C ID+ P A  ++  L ACS + + KLG  IHA ++R+  +    + N
Sbjct: 261 KGALELLSQMRRCDIDLDPVA--MIIGLGACSHIGAIKLGTVIHASAIRSCFDGFDNVRN 318

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           A++  Y RC  L     LF  +  +++ +W +M+ GY      +EA  +F+EM  +   E
Sbjct: 319 ALITMYSRCKDLRHADILFKSIKTKSLTTWNSMLSGYTHMDRSEEASFLFREMLFSG-IE 377

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
           PN  T+ ++L  C+ ++ L  GK  H YI  R       L+ N+++ MY + G V  A +
Sbjct: 378 PNYVTIASILPHCARVANLQQGKEFHCYIMRREGFEDYLLLWNSLVEMYARSGKVLSAKR 437

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           VF+ L  +DK++++++I+G  + G G+ AL+LF  MI + + PD VT +A++SACSH GL
Sbjct: 438 VFDSLRRRDKVTYTSLIAGYGIQGEGKTALKLFDEMIKHRIKPDQVTMVAVLSACSHSGL 497

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           V +G +LF+ MST+Y IVP ++H++C+VD++GRAGLL +A+  I  MP     ++W  L+
Sbjct: 498 VTEGNVLFEKMSTLYGIVPAVEHFSCMVDLFGRAGLLNKAKKVITSMPYRPTTAMWATLV 557

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
            ACRIH N E+ +   + L+  K  + G + L++N  A A RW    ++R  +R +G++K
Sbjct: 558 GACRIHGNTEIGEWAAEKLLEMKPENPGYYVLIANMHAAAGRWSKLAEVRTYMRDLGVRK 617

Query: 448 KTGCSWIEV 456
             GC+W++V
Sbjct: 618 APGCTWVDV 626



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/392 (25%), Positives = 171/392 (43%), Gaps = 43/392 (10%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           ++ +  L +C+      +  ++HAH I  G  + + +   L+ FY +   +  AH I  +
Sbjct: 42  HSISSLLYSCTNLKSLPQGKQLHAHTISLGFENHLVLVPKLVTFYSSFSLLADAHTITVN 101

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLG 127
               + + W  +IS     G H EA+  +  +    V+P+  T  SVL AC   +    G
Sbjct: 102 SDIVNPLPWNLLISSYVNNGLHGEALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDFG 161

Query: 128 KAIHAHSLRNLNEN-NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           + +H           N+ + N+++  Y + G L +   LF +MP+R+ VSW  +I  YA 
Sbjct: 162 REVHESINAAYGHRWNLYVHNSLVSMYGKFGELDAARRLFNQMPERDAVSWNGIISNYAS 221

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEAT---------------------------------- 212
           RG  KEA  +F+EM +   AE N  T                                  
Sbjct: 222 RGLWKEAFELFEEM-RLAGAEVNIITWNTIAGGCVQTRNFKGALELLSQMRRCDIDLDPV 280

Query: 213 -LVNVLSACSSISALSFGKYVH-SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN 270
            ++  L ACS I A+  G  +H S I + +D    N V NA+I MY +C D+  A  +F 
Sbjct: 281 AMIIGLGACSHIGAIKLGTVIHASAIRSCFD-GFDN-VRNALITMYSRCKDLRHADILFK 338

Query: 271 MLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQ 330
            +  K   +W++++SG        +A  LF  M+ + + P+ VT  +++  C+    + Q
Sbjct: 339 SIKTKSLTTWNSMLSGYTHMDRSEEASFLFREMLFSGIEPNYVTIASILPHCARVANLQQ 398

Query: 331 GLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
           G      +         +  +  +V+MY R+G
Sbjct: 399 GKEFHCYIMRREGFEDYLLLWNSLVEMYARSG 430



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 152/298 (51%), Gaps = 10/298 (3%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIF--IQNSLLHFYVTV 58
           M  C    +       L ACS     +    IHA  I      D F  ++N+L+  Y   
Sbjct: 270 MRRCDIDLDPVAMIIGLGACSHIGAIKLGTVIHASAIR--SCFDGFDNVRNALITMYSRC 327

Query: 59  KDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVL 115
           KD+  A  +F S+    + +W +++SG +     +EA  +F  +    ++PN  T+ S+L
Sbjct: 328 KDLRHADILFKSIKTKSLTTWNSMLSGYTHMDRSEEASFLFREMLFSGIEPNYVTIASIL 387

Query: 116 SACSSLVSHKLGKAIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV 174
             C+ + + + GK  H + +R    E+ ++L N++++ Y R G + S   +F  + +R+ 
Sbjct: 388 PHCARVANLQQGKEFHCYIMRREGFEDYLLLWNSLVEMYARSGKVLSAKRVFDSLRRRDK 447

Query: 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
           V++T++I GY  +G  K A+ +F EM K +  +P++ T+V VLSACS    ++ G  +  
Sbjct: 448 VTYTSLIAGYGIQGEGKTALKLFDEMIKHR-IKPDQVTMVAVLSACSHSGLVTEGNVLFE 506

Query: 235 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS-WSTVISGLAMNG 291
            +ST Y +  +    + +++++ + G +  A +V   + Y+   + W+T++    ++G
Sbjct: 507 KMSTLYGIVPAVEHFSCMVDLFGRAGLLNKAKKVITSMPYRPTTAMWATLVGACRIHG 564



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 98/212 (46%), Gaps = 15/212 (7%)

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNV---LSACSSISALSFGKYVHSY-ISTRY 240
           A +G   +A   F  ++    +   +A L ++   L +C+++ +L  GK +H++ IS  +
Sbjct: 13  ARKGHLLKAFETFSLIKLHASSANRDAILHSISSLLYSCTNLKSLPQGKQLHAHTISLGF 72

Query: 241 D---LSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
           +   + V  LV   +  ++      + +   + N L       W+ +IS    NG   +A
Sbjct: 73  ENHLVLVPKLVTFYSSFSLLADAHTITVNSDIVNPLP------WNLLISSYVNNGLHGEA 126

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
           L  +  M+   V PD+ T+ +++ AC     +D G  + ++++  Y     +  +  +V 
Sbjct: 127 LSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDFGREVHESINAAYGHRWNLYVHNSLVS 186

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
           MYG+ G L+ A     +MP E +   W  +++
Sbjct: 187 MYGKFGELDAARRLFNQMP-ERDAVSWNGIIS 217


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  294 bits (752), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 156/452 (34%), Positives = 255/452 (56%), Gaps = 5/452 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           ++ TF   L  C      +   +IH  + E G   D+ + N+L++ Y+    +  A  +F
Sbjct: 531 DNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVF 590

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           +S+   DV+SWT +I G +  G   +AI++F  +     +P  +T  S+L  C+S     
Sbjct: 591 HSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLD 650

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK + A+ L +  E +  + NA++  Y + GS+     +F KMP R++VSW  +I GYA
Sbjct: 651 EGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYA 710

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G  + AV    +M++ ++  PN+ + V++L+ACSS SAL  GK VH+ I  R  L   
Sbjct: 711 QNGLGQTAVEFAYQMQE-QDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKR-KLQGD 768

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             VG A+I+MY KCG  G A +VF+ +  K+ ++W+ +I+  A +G   +AL  F+ M  
Sbjct: 769 VRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEK 828

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             + PD  TF +++SAC+H GLV +G  +F +M + Y ++P ++HY C+V + GRA   +
Sbjct: 829 EGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQ 888

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EAE  I +MP   + +VW  LL ACRIH N  + +    + +     +   + L+SN +A
Sbjct: 889 EAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYA 948

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            A RW+D  KIR  +   G++K+ G SWIEV+
Sbjct: 949 AAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVD 980



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/449 (28%), Positives = 233/449 (51%), Gaps = 14/449 (3%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           P+     T+   L+ C+      +A  IHA ++E     DIF+ N L++ YV  + +  A
Sbjct: 22  PTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDA 81

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSL 121
           HQ+F  +   DV+SW ++IS  ++ GF K+A  +F  +      PN  T +S+L+AC S 
Sbjct: 82  HQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSP 141

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
              + GK IH+  ++   + +  + N++L  Y +CG L     +F  +  R+VVS+ TM+
Sbjct: 142 AELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTML 201

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
           G YA++ + KE + +F +M  ++   P++ T +N+L A ++ S L  GK +H  ++    
Sbjct: 202 GLYAQKAYVKECLGLFGQM-SSEGISPDKVTYINLLDAFTTPSMLDEGKRIHK-LTVEEG 259

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
           L+    VG A++ M V+CGDV  A Q F   A +D + ++ +I+ LA +G   +A + + 
Sbjct: 260 LNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYY 319

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            M  + V  +  T++++++ACS    ++ G ++   +S        +Q    ++ MY R 
Sbjct: 320 RMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGH-SSDVQIGNALISMYARC 378

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLN--ACRIHRNDEMFDRIRQDLVNKKGVSVG--TF 417
           G L +A      MP + +   W A++   A R  R + M  R+ + +   +GV  G  TF
Sbjct: 379 GDLPKARELFYTMP-KRDLISWNAIIAGYARREDRGEAM--RLYKQM-QSEGVKPGRVTF 434

Query: 418 ALMSNTFAGADRWEDTNKIRDEIRRMGLK 446
             + +  A +  + D   I ++I R G+K
Sbjct: 435 LHLLSACANSSAYADGKMIHEDILRSGIK 463



 Score =  187 bits (475), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 116/386 (30%), Positives = 209/386 (54%), Gaps = 9/386 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           TF   L AC+ +  +     IH  ++  G   +  + N+L++ Y     +  A  +F   
Sbjct: 433 TFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGT 492

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              DV+SW ++I+G ++ G ++ A  +F  +   +++P+  T  SVLS C +  + +LGK
Sbjct: 493 QARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGK 552

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IH     +  + ++ L NA+++ YIRCGSL     +F  +  R+V+SWT MIGG A++G
Sbjct: 553 QIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQG 612

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSVSNL 247
              +A+ +F +M+  +   P ++T  ++L  C+S + L  GK V +YI ++ Y+L     
Sbjct: 613 EDMKAIELFWQMQ-NEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTG-- 669

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           VGNA+I+ Y K G +  A +VF+ +  +D +SW+ +I+G A NG G+ A++    M    
Sbjct: 670 VGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQD 729

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           V P+  +F++L++ACS    +++G  +  A     ++   ++  A ++ MY + G   EA
Sbjct: 730 VVPNKFSFVSLLNACSSFSALEEGKRVH-AEIVKRKLQGDVRVGAALISMYAKCGSQGEA 788

Query: 368 EAFIREMPIEAEWSVWGALLNACRIH 393
           +     + IE     W A++NA   H
Sbjct: 789 QEVFDNI-IEKNVVTWNAMINAYAQH 813



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 117/398 (29%), Positives = 201/398 (50%), Gaps = 29/398 (7%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S +  T+   L A +      +   IH   +E G   DI +  +L+   V   D+ SA Q
Sbjct: 226 SPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQ 285

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVS 123
            F      DVV +  +I+ L++ G + EA + +  +    V  N  T +S+L+ACS+  +
Sbjct: 286 AFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKA 345

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            + GK IH+H   + + +++ + NA++  Y RCG L     LF  MPKR+++SW  +I G
Sbjct: 346 LEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAG 405

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           YA R    EA+ ++++M+ ++  +P   T +++LSAC++ SA + GK +H  I  R  + 
Sbjct: 406 YARREDRGEAMRLYKQMQ-SEGVKPGRVTFLHLLSACANSSAYADGKMIHEDI-LRSGIK 463

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
            +  + NA++NMY +CG +  A  VF     +D ISW+++I+G A +G    A +LF  M
Sbjct: 464 SNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEM 523

Query: 304 IINAVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
               + PD++TF +++S C            HG + + GL L   +              
Sbjct: 524 QNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNA----------- 572

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 390
            +++MY R G L++A      +      S W A++  C
Sbjct: 573 -LINMYIRCGSLQDARNVFHSLQHRDVMS-WTAMIGGC 608


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  293 bits (751), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 165/492 (33%), Positives = 263/492 (53%), Gaps = 37/492 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML+  +  + YTF   LKA +          +HAHV+++G   +  +  SL+  Y    D
Sbjct: 34  MLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGD 93

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
             +A  + +       V W  +ISG ++C    EA   F  +      P   T VSVLSA
Sbjct: 94  GAAARALLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSA 153

Query: 118 CSSLVSHKL-GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLF---------- 166
           C       L G  +H   + +    ++ ++NA++D Y  C  + S   LF          
Sbjct: 154 CGKGTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVS 213

Query: 167 ---------------------VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
                                 +MP+R+ VSWT MI GY +    +EA+ +F+EM+    
Sbjct: 214 WTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQ-CSN 272

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
              +E T+V+V++AC+ + AL  G++V  Y+S R  + +   VGNA+I+MY KCG +  A
Sbjct: 273 VSADEFTMVSVITACAQLGALEMGEWVRVYMS-RQGIKMDAFVGNALIDMYSKCGSIERA 331

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
           + VF  + ++DK +W+ +I GLA+NG G +A+++F  MI  +  PD+VTFI +++AC+H 
Sbjct: 332 LDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHA 391

Query: 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 385
           GLVD+G   F +M   Y I P + HY C++D++GRAG + EA   I +MP+    ++WG 
Sbjct: 392 GLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGT 451

Query: 386 LLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445
           LL ACR+H N E+ + + + L+     +   + L+SN +A  +RWED  ++R  I   G+
Sbjct: 452 LLAACRVHGNSEIGELVTERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGI 511

Query: 446 KKKTGCSWIEVN 457
           KK+ GCS IE+N
Sbjct: 512 KKEPGCSLIEMN 523


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  293 bits (751), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 151/452 (33%), Positives = 254/452 (56%), Gaps = 4/452 (0%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T T  L+AC      +    +H ++I  G+  D    N L++ Y    ++ ++ ++F+ +
Sbjct: 318 TITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGM 377

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMF--CGIDVKPNANTLVSVLSACSSLVSHKLGKA 129
              D VSW ++I+   + G   EA+ +F     DVKP++ T V +LS  + L    LGK 
Sbjct: 378 KCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKE 437

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           +H    +    +NI++ N ++D Y +CG +     +F  M  R++++W T+I        
Sbjct: 438 LHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSED 497

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
           C   + +   M +T+   P+ AT++++L  CS ++A   GK +H  I  +  L     VG
Sbjct: 498 CNLGLRMISRM-RTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCI-FKLGLESDVPVG 555

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
           N +I MY KCG +  + QVF ++  KD ++W+ +IS   M G G++A++ F  M    + 
Sbjct: 556 NVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIV 615

Query: 310 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEA 369
           PD V F+A+I ACSH GLV++GL  F  M   Y+I P+++HYACVVD+  R+ LL++AE 
Sbjct: 616 PDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAED 675

Query: 370 FIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADR 429
           FI  MP++ + S+WGALL+ACR+  + E+ +R+ + ++       G + L+SN +A   +
Sbjct: 676 FILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGK 735

Query: 430 WEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           W+    IR  I+  GLKK  GCSW+E+   ++
Sbjct: 736 WDQVRSIRKSIKARGLKKDPGCSWMEIQNKVY 767



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 128/411 (31%), Positives = 215/411 (52%), Gaps = 23/411 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YTF   + AC+     + A  IH  V++ G   D++I N+L+  Y    D+  A ++F
Sbjct: 114 DTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVF 173

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDM---FCGIDVKPNANTLVSVLSACSSLVSHK 125
             +   DVVSW ++ISG +  G+  EA+++   F  + V P++ T+ SVL AC  L S +
Sbjct: 174 EEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVE 233

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G  IH    +   + ++I++N +L  Y +   L     +F KM  R+ VSW TMI GY+
Sbjct: 234 EGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYS 293

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSV 244
           + G  +E++ +F EM    + +P+  T+ ++L AC  +  L FGKYVH Y I++ Y+   
Sbjct: 294 QVGLYEESIKLFMEM--VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDT 351

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           +    N +INMY KCG++  + +VF+ +  KD +SW+++I+    NG   +A++LF +M 
Sbjct: 352 T--ASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMK 409

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLIL---FKAMSTVYEIVPQMQHYACVVDMYGRA 361
            + V PD VT++ L+S  +  G +  G  L      M     IV        +VDMY + 
Sbjct: 410 TD-VKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVS----NTLVDMYAKC 464

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND-----EMFDRIRQDLV 407
           G + ++      M    +   W  ++ +C +H  D      M  R+R + V
Sbjct: 465 GEMGDSLKVFENMKAR-DIITWNTIIASC-VHSEDCNLGLRMISRMRTEGV 513



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 192/382 (50%), Gaps = 13/382 (3%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           F+   +A + A    +  ++H+ +I  G  H +     L+  Y   +D  S+  +F  + 
Sbjct: 16  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFR-LA 74

Query: 73  FP--DVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLVSHKLG 127
            P  +V  W +II  L+  G   EA+ ++     I ++P+  T  SV++AC+ L+  ++ 
Sbjct: 75  SPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMA 134

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           K+IH   L     +++ + NA++D Y R   L     +F +MP R+VVSW ++I GY   
Sbjct: 135 KSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNAN 194

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G+  EA+ ++    +     P+  T+ +VL AC  + ++  G  +H  I  +  +    +
Sbjct: 195 GYWNEALEIYYRF-RNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIE-KIGIKKDVI 252

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V N +++MY K   +    ++F+ +  +D +SW+T+I G +  G   ++++LF + ++N 
Sbjct: 253 VNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLF-MEMVNQ 311

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTV-YEIVPQMQHYACVVDMYGRAGLLEE 366
             PD +T  +++ AC H G ++ G  +   M T  YE      +   +++MY + G L  
Sbjct: 312 FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASN--ILINMYAKCGNLLA 369

Query: 367 AEAFIREMPIEAEWSVWGALLN 388
           ++     M  +   S W +++N
Sbjct: 370 SQEVFSGMKCKDSVS-WNSMIN 390


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  293 bits (751), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 155/451 (34%), Positives = 263/451 (58%), Gaps = 9/451 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T+++ +K CS     Q+   +H H+   G+   +F+ N+LL+ YV    +  A  +F+ +
Sbjct: 57  TYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEM 116

Query: 72  VFPDVVSWTTIISGLSKCGFHK--EAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKA 129
              +VVSWTT+IS  S     K  + + +     V+PN  T  SVL AC  L + +    
Sbjct: 117 PERNVVSWTTMISAYSNKLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNLR---Q 173

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           +H   ++   E+++ + +A++D Y +   L +   +F +MP R++V W ++IGG+A+   
Sbjct: 174 LHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSD 233

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
             EA+++F+ M++      ++ATL +VL AC+ ++ L  G+ VH ++  ++D  +  ++ 
Sbjct: 234 GNEALNLFKRMKRAGFL-ADQATLTSVLRACTGLALLELGRQVHVHV-LKFDQDL--ILN 289

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
           NA+I+MY KCG +  A   F+ +  KD ISWST+++GLA NG  RQAL+LF  M  +   
Sbjct: 290 NALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSR 349

Query: 310 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEA 369
           P+ +T + ++ ACSH GLV++G   F++M  ++ + P  +HY C++D+ GRAG L+EA  
Sbjct: 350 PNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVK 409

Query: 370 FIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADR 429
            I EM  E +   W  LL ACR+HRN ++     + ++  +    GT+ L+SN +A   R
Sbjct: 410 LIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQR 469

Query: 430 WEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           WED  ++R  +   G++K  GCSWIEV+  I
Sbjct: 470 WEDVAEVRKTMTNRGIRKTPGCSWIEVDKQI 500



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 137/284 (48%), Gaps = 16/284 (5%)

Query: 107 NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLF 166
           +A T   ++  CS+  + + GK +H H      E  + + N +L+ Y++   L     LF
Sbjct: 54  DAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLF 113

Query: 167 VKMPKRNVVSWTTMIGGYAER---GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI 223
            +MP+RNVVSWTTMI  Y+ +      K  + +F+E        PN  T  +VL AC  +
Sbjct: 114 DEMPERNVVSWTTMISAYSNKLNDKALKCLILMFRE-----GVRPNMFTYSSVLRACDGL 168

Query: 224 SALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTV 283
             L   + +H  I  +  L     V +A+I++Y K  D+  A+ VF+ +  +D + W+++
Sbjct: 169 PNL---RQLHCGI-IKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSI 224

Query: 284 ISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 343
           I G A N  G +AL LF  M       D  T  +++ AC+   L++ G    +    V +
Sbjct: 225 IGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGR---QVHVHVLK 281

Query: 344 IVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
               +     ++DMY + G LE+A +    M +E +   W  ++
Sbjct: 282 FDQDLILNNALIDMYCKCGSLEDANSAFSRM-VEKDVISWSTMV 324



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 4/104 (3%)

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM-STVYEIVPQMQHYAC 353
           +A++    M  + VF D +T+  LI  CS  G V +G  + + +    YE  P+M     
Sbjct: 38  RAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYE--PKMFVVNT 95

Query: 354 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
           +++MY +  LLEEAE    EMP E     W  +++A     ND+
Sbjct: 96  LLNMYVKFNLLEEAEDLFDEMP-ERNVVSWTTMISAYSNKLNDK 138


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 167/499 (33%), Positives = 270/499 (54%), Gaps = 48/499 (9%)

Query: 2   LSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK-- 59
           +  P     Y   + L +C      +   +IHA  I  G   D F+ + +L F       
Sbjct: 27  IPTPQLLCKYPILRHLSSCKTL---KDLTQIHAQTITTGIFSDNFVASRILSFAALSPHG 83

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAID-------MFCGIDVKPNANTLV 112
            I  A  +F  +  PD+    T+I   +   F    ID       M     V P+ +T  
Sbjct: 84  SIPYARFLFYRIRKPDIFIANTLIRAYA---FSPNPIDAVVFYSEMTESSVVFPDVHTFP 140

Query: 113 SVLSACSSLVSHKLGKAIHAH----------SLRN-----------LNENNIILD----- 146
            +L ACS + S +LG+AIH+H          S+ N           +    ++ D     
Sbjct: 141 LLLKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPEC 200

Query: 147 -----NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME 201
                N ++  Y++CG   S   +F  MP R+VVSW+ MI GY +    KE + +FQ+M 
Sbjct: 201 DGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMM 260

Query: 202 KTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGD 261
             K  EPNE+ LVN LSAC+ + A+  G+++  Y+  R ++ ++  +G A+I+MY KCG 
Sbjct: 261 GEK-IEPNESVLVNALSACAHLGAMEQGQWIERYME-RKNVRLTVRLGTALIDMYSKCGS 318

Query: 262 VGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISA 321
           V  A++VF+ +  K+ ++WS +I+GLA+NG G+ AL LFS M +  V P++VTFI +++A
Sbjct: 319 VERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNA 378

Query: 322 CSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 381
           CSH  LVD+G   F +M+++Y + P   H+ C+VD+YGRAG+L++A+  I+ MP +   +
Sbjct: 379 CSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSA 438

Query: 382 VWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIR 441
           +WGALLNACRIH + E+ +++ + L+       G + L+SN +A   RW+   ++R  +R
Sbjct: 439 IWGALLNACRIHGDTELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMR 498

Query: 442 RMGLKKKTGCSWIEVNPSI 460
              + K  GCS+I++  +I
Sbjct: 499 ERQVSKTPGCSFIDLGDTI 517


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 157/453 (34%), Positives = 263/453 (58%), Gaps = 7/453 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           TF   L A +     Q   ++H  + + G   +  +  SL+  Y    DI  A  IF+ +
Sbjct: 199 TFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKL 258

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              +VV+WT +I+G ++ G    A+++   +   +V PN  T  S+L  C++ ++ + GK
Sbjct: 259 PEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGK 318

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H + +++     I + NA++  Y +CG L     LF  +P R+VV+WT M+ GYA+ G
Sbjct: 319 KVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLG 378

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSNL 247
           F  EA+ +F+ M++ +  +P++ T  + L++CSS + L  GK +H   +   Y L V   
Sbjct: 379 FHDEAIDLFRRMQQ-QGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDV--Y 435

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           + +A+++MY KCG +  A  VFN ++ ++ ++W+ +I+G A +G  R+AL+ F  M    
Sbjct: 436 LQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQG 495

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           + PD VTF +++SAC+H GLV++G   F++M   Y I P ++HY+C VD+ GRAG LEEA
Sbjct: 496 IKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEA 555

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
           E  I  MP +   SVWGALL+ACRIH + E  +R  ++++       G +  +SN +A A
Sbjct: 556 ENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAA 615

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            R+ED  K+R  + +  + K+ G SWIEV+  +
Sbjct: 616 GRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKV 648



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 212/407 (52%), Gaps = 14/407 (3%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           F   L+ C+     ++  E+HA +++ G   + +++N+LL  Y     +  A ++F+ + 
Sbjct: 99  FRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIR 158

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHKLGKA 129
             ++VSWT +I        + EA   +  + +   KP+  T VS+L+A ++    ++G+ 
Sbjct: 159 DRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQK 218

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           +H    +   E    +  +++  Y +CG ++    +F K+P++NVV+WT +I GYA++G 
Sbjct: 219 VHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQ 278

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSNLV 248
              A+ + ++M++  E  PN+ T  ++L  C++  AL  GK VH Y I + Y   +   V
Sbjct: 279 VDVALELLEKMQQA-EVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREI--WV 335

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            NA+I MY KCG +  A ++F  L ++D ++W+ +++G A  G   +A+ LF  M    +
Sbjct: 336 VNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGI 395

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAM-STVYEIVPQMQHYACVVDMYGRAGLLEEA 367
            PD +TF + +++CS    + +G  + + +    Y +   +Q  + +V MY + G +++A
Sbjct: 396 KPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQ--SALVSMYAKCGSMDDA 453

Query: 368 EAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDRIRQDLVNKKGVS 413
                +M  E     W A++  C  H R  E  +   Q  + K+G+ 
Sbjct: 454 RLVFNQMS-ERNVVAWTAMITGCAQHGRCREALEYFEQ--MKKQGIK 497



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 180/364 (49%), Gaps = 42/364 (11%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T+T  L+ C+     +   ++H ++I+ G+  +I++ N+L+  Y     +  A ++F
Sbjct: 297 NKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLF 356

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   DVV+WT +++G ++ GFH EAID+F  +    +KP+  T  S L++CSS    +
Sbjct: 357 GDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQ 416

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK+IH   +      ++ L +A++  Y +CGS+     +F +M +RNVV+WT MI G A
Sbjct: 417 EGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCA 476

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G C+EA+  F++M+K +  +P++ T  +VLSAC+ +  +  G+               
Sbjct: 477 QHGRCREALEYFEQMKK-QGIKPDKVTFTSVLSACTHVGLVEEGR--------------- 520

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
                   +MY+   D GI   V +         +S  +  L   G   +A  +   M  
Sbjct: 521 ----KHFRSMYL---DYGIKPMVEH---------YSCFVDLLGRAGHLEEAENVILTMPF 564

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQ-HYACVVDMYGRAGLL 364
               P    + AL+SAC     V++G    +A   V ++ P     Y  + ++Y  AG  
Sbjct: 565 Q---PGPSVWGALLSACRIHSDVERGE---RAAENVLKLDPDDDGAYVALSNIYAAAGRY 618

Query: 365 EEAE 368
           E+AE
Sbjct: 619 EDAE 622



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 175/357 (49%), Gaps = 22/357 (6%)

Query: 75  DVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPN---ANTLVSVLSACSSLVSHKLGKAIH 131
           D ++ +  +S L K G  KEA+ +   + ++     ++    +L  C+ L S + G+ +H
Sbjct: 60  DTLANSGDVSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVH 119

Query: 132 AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
           A  L++  + N  L+N +L  Y +CGSL     +F  +  RN+VSWT MI  +       
Sbjct: 120 AAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNL 179

Query: 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNA 251
           EA   ++ M K    +P++ T V++L+A ++   L  G+ VH  I+ +  L +   VG +
Sbjct: 180 EAYKCYETM-KLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIA-KAGLELEPRVGTS 237

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD 311
           ++ MY KCGD+  A  +F+ L  K+ ++W+ +I+G A  G    AL+L   M    V P+
Sbjct: 238 LVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPN 297

Query: 312 DVTFIALISACS------HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
            +T+ +++  C+      HG  V + +I       ++ +         ++ MY + G L+
Sbjct: 298 KITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVV-------NALITMYCKCGGLK 350

Query: 366 EAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           EA     ++P   +   W A++    ++  +DE  D  R+  + ++G+        S
Sbjct: 351 EARKLFGDLP-HRDVVTWTAMVTGYAQLGFHDEAIDLFRR--MQQQGIKPDKMTFTS 404


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 156/459 (33%), Positives = 266/459 (57%), Gaps = 6/459 (1%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           PS +N + +  AL+ C       +   +H  +++ G   D+F  N LL+ YV    +  A
Sbjct: 33  PSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDA 92

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSVLSACSSLV 122
            ++F+ +   + +S+ T+I G ++     EAI++F  +  +V PN  T  SVL AC+++ 
Sbjct: 93  SKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREVLPNQFTFASVLQACATME 152

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
              LG  IH H ++    +++ + NA++D Y +CG + +   LF + P RN V+W T+I 
Sbjct: 153 GLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIV 212

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYD 241
           G+ + G  ++A+ +F  M + +  +  E T  + L AC+S++AL  G  +HS  + T +D
Sbjct: 213 GHVQLGDGEKALRLFLNMLEYR-VQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFD 271

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
             +  +V NA+I+MY KCG +  A  VF+++  +D++SW+ +ISG +M+G GR+AL++F 
Sbjct: 272 KDI--VVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFD 329

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            M    V PD +TF+ ++SAC++ GL+DQG   F +M   + I P ++HY C+V + GR 
Sbjct: 330 KMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRG 389

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           G L++A   I E+P +    VW ALL AC IH + E+     Q ++  +     T  L+S
Sbjct: 390 GHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLS 449

Query: 422 NTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           N +A A RW++   +R  ++R G+KK+ G SWIE   ++
Sbjct: 450 NMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTV 488


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 164/492 (33%), Positives = 269/492 (54%), Gaps = 41/492 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N Y+F   L ACS     +   +IH  + +  +  D+F+ + L+ FY     +  A ++F
Sbjct: 155 NDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVF 214

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHK 125
           + +   +VVSW  +I+   + G   EA++ F     +  KP+  TL SV+SAC++L + K
Sbjct: 215 DGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFK 274

Query: 126 LGKAIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
            G  IHA  +++    N++IL NA++D Y +CG +     +F +MP RN VS TTM+ GY
Sbjct: 275 EGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGY 334

Query: 185 AERGFCKEAVSVFQEMEK-------------TKEAEPNEA-----------------TLV 214
           A+    K A S+F  +++             T+  E  EA                 T  
Sbjct: 335 AKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFG 394

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSN------LVGNAVINMYVKCGDVGIAIQV 268
           N+L+A ++++ L  G+  HS++  ++     +       VGN++I+MY+KCG V   ++V
Sbjct: 395 NLLNASANLADLELGRQAHSHV-VKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRV 453

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F  +  KD +SW+T+I G A NG G +AL+LF  M+ +   PD VT I  + ACSH GLV
Sbjct: 454 FENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLV 513

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
           ++G   F +M+  + ++P   HY C+VD+ GRAG LEEA+  I  MP + +  VW +LL+
Sbjct: 514 EEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLS 573

Query: 389 ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
           AC++HRN  +   + + +      S G + L++N ++   RW D   +R  +RR G+ K+
Sbjct: 574 ACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDAVSVRKLMRRRGVVKQ 633

Query: 449 TGCSWIEVNPSI 460
            GCSWI++  ++
Sbjct: 634 PGCSWIDIQSNV 645



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 178/360 (49%), Gaps = 39/360 (10%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFY---------------VT 57
           F + L  C      + A  +H  +I+     ++FIQN L+  Y               ++
Sbjct: 27  FAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMS 86

Query: 58  VKDIFSAHQIFNSV--------------VFP--DVVSWTTIISGLSKCGFHKEAIDMFCG 101
            +++FS + I +++              + P  D  SW ++I+G ++    +EA+D F  
Sbjct: 87  ERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVR 146

Query: 102 I---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGS 158
           +   D   N  +  S LSACS L   KLG  IH    ++    ++ + + ++DFY +CG 
Sbjct: 147 MHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGL 206

Query: 159 LASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLS 218
           +     +F  M ++NVVSW  +I  Y + G   EA+  F  M +    +P+E TL +V+S
Sbjct: 207 VGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELG-FKPDEVTLASVVS 265

Query: 219 ACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI 278
           AC++++A   G  +H+ +          ++GNA+++MY KCG V  A  VF+ +  ++ +
Sbjct: 266 ACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAV 325

Query: 279 SWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM 338
           S +T++SG A +   + A  +F+ +       D V++ ALI+  +  G  ++ L LF+ +
Sbjct: 326 SETTMVSGYAKSASVKAARSMFATIKQK----DIVSWNALIAGYTQNGENEEALGLFRML 381



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 156/345 (45%), Gaps = 39/345 (11%)

Query: 107 NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSL------- 159
           +++    +L  C  L S +  +++H   ++      + + N ++D Y +CG L       
Sbjct: 23  DSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVF 82

Query: 160 ------------------------ASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVS 195
                                       +LF  MP+++  SW +MI G+A+    +EA+ 
Sbjct: 83  DRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALD 142

Query: 196 VFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS-TRYDLSVSNLVGNAVIN 254
            F  M +  +   N+ +  + LSACS +  L  G  +H  IS ++Y L V   +G+ +I+
Sbjct: 143 WFVRMHRD-DFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDV--FMGSGLID 199

Query: 255 MYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVT 314
            Y KCG VG A +VF+ +  K+ +SW+ +I+    NG   +AL+ F  M      PD+VT
Sbjct: 200 FYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVT 259

Query: 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
             +++SAC+      +G+ +   +    +    +     +VDMY + G + EA      M
Sbjct: 260 LASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRM 319

Query: 375 PIE---AEWSVWGALLNACRIHRNDEMFDRIRQ-DLVNKKGVSVG 415
           P+    +E ++      +  +     MF  I+Q D+V+   +  G
Sbjct: 320 PVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAG 364


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 164/494 (33%), Positives = 271/494 (54%), Gaps = 52/494 (10%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           +    L AC+      +  ++H + +  G   D+F+ N+++  Y     +  A+++F  +
Sbjct: 233 SLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERM 292

Query: 72  VFPDVVSWTTIISGLSKCG--------FHK---------------------------EAI 96
              DVVSW  +++G S+ G        F K                           EA+
Sbjct: 293 KVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEAL 352

Query: 97  DMF-----CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR---NLNENN----II 144
           D+F     CG +  PN  TLVS+LS C+   +   GK  H H+++   NL+EN+    ++
Sbjct: 353 DVFRQMRLCGSE--PNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLM 410

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPK--RNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202
           + NA++D Y +C S  +   +F  +P   R+VV+WT +IGG A+ G   EA+ +F +M +
Sbjct: 411 VINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQ 470

Query: 203 TKE-AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGD 261
                 PN  T+   L AC+ + AL FG+ +H+Y+      S    V N +I+MY K GD
Sbjct: 471 PDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGD 530

Query: 262 VGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISA 321
           V  A  VF+ +  ++ +SW+++++G  M+G G +ALQ+F  M    + PD VTF+ ++ A
Sbjct: 531 VDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYA 590

Query: 322 CSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 381
           CSH G+VDQG+  F  M+  + +VP  +HYAC+VD+  RAG L+EA   IR MP++   +
Sbjct: 591 CSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPA 650

Query: 382 VWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIR 441
           VW ALL+ACR++ N E+ +     L+  +  + G++ L+SN +A A  W+D  +IR  ++
Sbjct: 651 VWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMK 710

Query: 442 RMGLKKKTGCSWIE 455
             G+KK+ GCSW++
Sbjct: 711 NTGIKKRPGCSWVQ 724



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 125/447 (27%), Positives = 212/447 (47%), Gaps = 66/447 (14%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +HYTF   LKAC      +    +HA V   G   ++F+ N L+  Y       +A Q+F
Sbjct: 125 DHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVF 184

Query: 69  NSVV---FPDVVSWTTIISGLSKCGFHKEAIDMFC----GIDVKPNANTLVSVLSACSSL 121
           + +      D+VSW +I++   + G    A+ MF      + ++P+A +LV+VL AC+S+
Sbjct: 185 DEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASV 244

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM- 180
            +   GK +H ++LR+    ++ + NA++D Y +CG +     +F +M  ++VVSW  M 
Sbjct: 245 GAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMV 304

Query: 181 ----------------------------------IGGYAERGFCKEAVSVFQEMEKTKEA 206
                                             I GYA+RG   EA+ VF++M +   +
Sbjct: 305 TGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQM-RLCGS 363

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN-------LVGNAVINMYVKC 259
           EPN  TLV++LS C+    L  GK  H + + ++ L++         +V NA+I+MY KC
Sbjct: 364 EPNVVTLVSLLSGCALAGTLLHGKETHCH-AIKWILNLDENDPGDDLMVINALIDMYSKC 422

Query: 260 GDVGIAIQVFNMLAYKDK--ISWSTVISGLAMNGCGRQALQLFSLMII--NAVFPDDVTF 315
                A  +F+++  KD+  ++W+ +I G A +G   +AL+LFS M+   N V P+  T 
Sbjct: 423 KSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTI 482

Query: 316 IALISACSHGGLVDQG-----LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAF 370
              + AC+  G +  G      +L     +    V       C++DMY ++G ++ A   
Sbjct: 483 SCALMACARLGALRFGRQIHAYVLRNRFESAMLFVAN-----CLIDMYSKSGDVDAARVV 537

Query: 371 IREMPIEAEWSVWGALLNACRIHRNDE 397
              M      S W +L+    +H   E
Sbjct: 538 FDNMHQRNGVS-WTSLMTGYGMHGRGE 563



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 157/316 (49%), Gaps = 14/316 (4%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD---VVSWTTIISGLSK 88
           IH  ++  G  HD      ++  Y+T      A  +   +  P    V  W  +I     
Sbjct: 48  IHQQLLVQGLPHD---PTHIISMYLTFNSPAKALSVLRRL-HPSSHTVFWWNQLIRRSVH 103

Query: 89  CGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
            GF ++ + ++  +     +P+  T   VL AC  + S + G ++HA    +  E N+ +
Sbjct: 104 LGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFV 163

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNV---VSWTTMIGGYAERGFCKEAVSVFQEMEK 202
            N ++  Y RCG+  +   +F +M +R V   VSW +++  Y + G    A+ +F+ M +
Sbjct: 164 GNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTE 223

Query: 203 TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 262
                P+  +LVNVL AC+S+ A S GK VH Y + R  L     VGNAV++MY KCG +
Sbjct: 224 DLGIRPDAVSLVNVLPACASVGAWSRGKQVHGY-ALRSGLFEDVFVGNAVVDMYAKCGMM 282

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
             A +VF  +  KD +SW+ +++G +  G    AL LF  +    +  + VT+ A+I+  
Sbjct: 283 EEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGY 342

Query: 323 SHGGLVDQGLILFKAM 338
           +  GL  + L +F+ M
Sbjct: 343 AQRGLGFEALDVFRQM 358



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 121/236 (51%), Gaps = 16/236 (6%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEY-------GHLHDIFIQNSLLH 53
           M  C S  N  T    L  C+LA       E H H I++           D+ + N+L+ 
Sbjct: 358 MRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALID 417

Query: 54  FYVTVKDIFSAHQIFNSVVFPD--VVSWTTIISGLSKCGFHKEAIDMFCGI-----DVKP 106
            Y   K   +A  +F+ +   D  VV+WT +I G ++ G   EA+++F  +      V P
Sbjct: 418 MYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMP 477

Query: 107 NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII-LDNAILDFYIRCGSLASCGYL 165
           NA T+   L AC+ L + + G+ IHA+ LRN  E+ ++ + N ++D Y + G + +   +
Sbjct: 478 NAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVV 537

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221
           F  M +RN VSWT+++ GY   G  +EA+ +F EM+K     P+  T V VL ACS
Sbjct: 538 FDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLV-PDGVTFVVVLYACS 592



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 126/246 (51%), Gaps = 18/246 (7%)

Query: 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYV 232
            V  W  +I      GF ++ + +++ M++     P+  T   VL AC  I +   G  V
Sbjct: 90  TVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLG-WRPDHYTFPFVLKACGEIPSFRCGASV 148

Query: 233 HSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DKISWSTVISGLA 288
           H+ + ++ ++ +V   VGN +++MY +CG    A QVF+ +  +   D +SW+++++   
Sbjct: 149 HAVVFASGFEWNV--FVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYM 206

Query: 289 MNGCGRQALQLFSLMIIN-AVFPDDVTFIALISACSHGGLVDQGLIL--FKAMSTVYEIV 345
             G   +A+++F  M  +  + PD V+ + ++ AC+  G   +G  +  +   S ++E V
Sbjct: 207 QGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDV 266

Query: 346 PQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDE---MFDR 401
                   VVDMY + G++EEA      M ++   S W A++    +I R D+   +F++
Sbjct: 267 FVGN---AVVDMYAKCGMMEEANKVFERMKVKDVVS-WNAMVTGYSQIGRFDDALGLFEK 322

Query: 402 IRQDLV 407
           IR++ +
Sbjct: 323 IREEKI 328


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 156/435 (35%), Positives = 254/435 (58%), Gaps = 10/435 (2%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           E+HA+ ++     D+ I N+L+  Y+    +  + ++F+ +   D VSWTTII+  ++  
Sbjct: 386 EVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSS 445

Query: 91  FHKEAIDMFC-----GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
            + EAI  F      GI V P    + S+L ACS L S  L K +H++++RN    ++IL
Sbjct: 446 RYSEAIGKFRTAQKEGIKVDPM--MMGSILEACSGLKSISLLKQVHSYAIRN-GLLDLIL 502

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            N I+D Y  CG +     +F  + K+++V+WT+M+  +AE G   EAV++F +M     
Sbjct: 503 KNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAG- 561

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
            +P+   LV +L A + +S+L+ GK +H ++  R    V   V +++++MY  CG +  A
Sbjct: 562 IQPDSVALVGILGAIAGLSSLTKGKEIHGFL-IRGKFPVEGAVVSSLVDMYSGCGSMNYA 620

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
           ++VF+    KD + W+ +I+   M+G G+QA+ +F  M+   V PD V+F+AL+ ACSH 
Sbjct: 621 LKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHS 680

Query: 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 385
            LVD+G      M + Y++ P  +HYACVVD+ GR+G  EEA  FI+ MP+E +  VW A
Sbjct: 681 KLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCA 740

Query: 386 LLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445
           LL ACRIH+N E+       L+  +  + G + L+SN FA   +W +  +IR ++   GL
Sbjct: 741 LLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGL 800

Query: 446 KKKTGCSWIEVNPSI 460
           +K   CSWIE+  ++
Sbjct: 801 RKDPACSWIEIGNTV 815



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 115/433 (26%), Positives = 200/433 (46%), Gaps = 29/433 (6%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDI---FIQNSLLHFYVTVKDI 61
           P   +HY +   L A   A    +  ++HAH +  G L D    F+   LL  Y     +
Sbjct: 52  PPPTDHYGWVLDLVAVRRAVSEGR--QLHAHAVATGALGDDDAGFLATKLLFMYGKCGRL 109

Query: 62  FSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK-------PNANTLVSV 114
             AH++F+ +    V SW  +I      G   EA+ ++  +          P+  TL SV
Sbjct: 110 PDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASV 169

Query: 115 LSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK-RN 173
           L AC +    + G  +H  ++++  + + ++ NA++  Y +CG L S   +F  M   R+
Sbjct: 170 LKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRD 229

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
           V SW + I G  + G   EA+ +F+ M+ +     N  T V VL  C+ ++ L+ G+ +H
Sbjct: 230 VASWNSAISGCVQNGMFLEALDLFRRMQ-SDGFSMNSYTTVGVLQVCAELAQLNHGRELH 288

Query: 234 SYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMN 290
           + +    T +     N+  NA++ MY +CG V  A++VF  +  KD ISW++++S    N
Sbjct: 289 AALLKCGTEF-----NIQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQN 343

Query: 291 GCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQH 350
               +A+  F  M+ N   PD    ++L+SA  H G +  G  +  A +    +   +Q 
Sbjct: 344 RLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREV-HAYAVKQRLDSDLQI 402

Query: 351 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC--RIHRNDEMFDRIRQDLVN 408
              ++DMY +   +E +      M I+   S W  ++ AC  +  R  E   + R     
Sbjct: 403 ANTLMDMYIKCYSVECSARVFDRMRIKDHVS-WTTII-ACYAQSSRYSEAIGKFRT--AQ 458

Query: 409 KKGVSVGTFALMS 421
           K+G+ V    + S
Sbjct: 459 KEGIKVDPMMMGS 471


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 152/455 (33%), Positives = 270/455 (59%), Gaps = 10/455 (2%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           + + LK C++    ++   +H H++     +D+ I+NS+L  Y     +  A Q+F+ + 
Sbjct: 94  YNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQVFDEMC 153

Query: 73  FPDVVSWTTIISGLSKCGFHKEAID---MFCGI---DVKPNANTLVSVLSACSSLVSHKL 126
             DVV+WT++I+G S+ G+   A     +F  +    ++PN   L S++  C  L S   
Sbjct: 154 VKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFLGSCVD 213

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           GK IH    +   + N+ + ++++D Y RCG L     +F ++  +N VSW  +I G+A 
Sbjct: 214 GKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALISGFAR 273

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
           +G  +EA+ +F +M++       E T   +L + S+  +L  GK++H+++  +    +  
Sbjct: 274 KGEGEEALGLFVKMQREGFG-ATEFTYSALLCSSSTTGSLEQGKWLHAHM-MKSGKKLVG 331

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS-LMII 305
            VGN +++MY K G++  A +VF+ L   D +S ++++ G A +G G++A++LF  +M+ 
Sbjct: 332 YVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLW 391

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             + P+D+TF+++++ACSH GL+D+GL  F+ M   Y + P++ HY  VVD++GRAGLL+
Sbjct: 392 VEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKK-YGLEPKLSHYTTVVDLFGRAGLLD 450

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           +A++FI EMPIE   ++WGALL A ++H+N EM     Q ++       G   L+SN +A
Sbjct: 451 QAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGAYAAQKVLELDPFYPGAHTLLSNIYA 510

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            A +W+D  K+R E++  GLKK+  CSW+E+  S+
Sbjct: 511 SAGQWKDVAKVRKEMKDSGLKKEPACSWVEIENSV 545



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 136/255 (53%), Gaps = 7/255 (2%)

Query: 87  SKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
           S  G H   +D+     ++P+      +L  C+ L   K GK +H H + +   N++++ 
Sbjct: 72  STTGLH--VLDLINNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIK 129

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVS---VFQEMEKT 203
           N+IL  Y +CGSL     +F +M  ++VV+WT+MI GY++ G+   A +   +F EM + 
Sbjct: 130 NSILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRD 189

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
               PNE  L +++  C  + +   GK +H     +Y    +  VG+++++MY +CG++ 
Sbjct: 190 G-LRPNEFALSSLVKCCGFLGSCVDGKQIHG-CCWKYGFQENVFVGSSLVDMYARCGELR 247

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
            +  VF+ L  K+++SW+ +ISG A  G G +AL LF  M        + T+ AL+ + S
Sbjct: 248 ESRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSS 307

Query: 324 HGGLVDQGLILFKAM 338
             G ++QG  L   M
Sbjct: 308 TTGSLEQGKWLHAHM 322



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 129/255 (50%), Gaps = 4/255 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +  +  +K C          +IH    +YG   ++F+ +SL+  Y    ++  +  +F
Sbjct: 194 NEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVF 253

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHK 125
           + +   + VSW  +ISG ++ G  +EA+ +F  +  +       T  ++L + S+  S +
Sbjct: 254 DELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLE 313

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK +HAH +++  +    + N +L  Y + G++     +F ++ K +VVS  +M+ GYA
Sbjct: 314 QGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYA 373

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G  KEAV +F+EM    E EPN+ T ++VL+ACS    L  G Y    +  +Y L   
Sbjct: 374 QHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMK-KYGLEPK 432

Query: 246 NLVGNAVINMYVKCG 260
                 V++++ + G
Sbjct: 433 LSHYTTVVDLFGRAG 447



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 91/180 (50%), Gaps = 9/180 (5%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +T++  L + S     ++   +HAH+++ G     ++ N+LLH Y    +I  A ++F+ 
Sbjct: 297 FTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDR 356

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMF----CGIDVKPNANTLVSVLSACSSLVSHKL 126
           +V  DVVS  +++ G ++ G  KEA+++F      ++++PN  T +SVL+ACS   +  L
Sbjct: 357 LVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSH--AGLL 414

Query: 127 GKAIHAHSLRNLN--ENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIGG 183
            + ++   L      E  +     ++D + R G L        +MP + N   W  ++G 
Sbjct: 415 DEGLYYFELMKKYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGA 474


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 151/452 (33%), Positives = 253/452 (55%), Gaps = 4/452 (0%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T T  L+AC      +    +H ++I  G+  D    N L++ Y    ++ ++ ++F+ +
Sbjct: 377 TITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGM 436

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMF--CGIDVKPNANTLVSVLSACSSLVSHKLGKA 129
              D VSW ++I+   + G   EA+ +F     DVKP++ T V +LS  + L    LGK 
Sbjct: 437 KCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKE 496

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           +H    +    +NI++ N ++D Y +CG +     +F  M  R++++W T+I        
Sbjct: 497 LHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSED 556

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
           C   + +   M +T+   P+ AT++++L  CS ++A   GK +H  I  +  L     VG
Sbjct: 557 CNLGLRMISRM-RTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCI-FKLGLESDVPVG 614

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
           N +I MY KCG +  + QVF ++  KD ++W+ +IS   M G G++A++ F  M    + 
Sbjct: 615 NVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIV 674

Query: 310 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEA 369
           PD V F+A+I ACSH GLV++GL  F  M   Y+I P+++HYACVVD+  R+ LL++AE 
Sbjct: 675 PDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAED 734

Query: 370 FIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADR 429
           FI  MP++ + S+WGALL+ACR+  + E+  R+ + ++       G + L+SN +A   +
Sbjct: 735 FILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGK 794

Query: 430 WEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           W+    IR  I+  GLKK  GCSW+E+   ++
Sbjct: 795 WDQVRSIRKSIKARGLKKDPGCSWMEIQNKVY 826



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 128/411 (31%), Positives = 214/411 (52%), Gaps = 23/411 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YTF   + AC+     + A  IH  V+  G   D++I N+L+  Y    D+  A ++F
Sbjct: 173 DTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVF 232

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDM---FCGIDVKPNANTLVSVLSACSSLVSHK 125
             +   DVVSW ++ISG +  G+  EA+++   F  + V P++ T+ SVL AC  L S +
Sbjct: 233 EEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVE 292

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G  IH    +   + ++I++N +L  Y +   L     +F KM  R+ VSW TMI GY+
Sbjct: 293 EGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYS 352

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSV 244
           + G  +E++ +F EM    + +P+  T+ ++L AC  +  L FGKYVH Y I++ Y+   
Sbjct: 353 QVGLYEESIKLFMEM--VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDT 410

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           +    N +INMY KCG++  + +VF+ +  KD +SW+++I+    NG   +A++LF +M 
Sbjct: 411 T--ASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMK 468

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLIL---FKAMSTVYEIVPQMQHYACVVDMYGRA 361
            + V PD VT++ L+S  +  G +  G  L      M     IV        +VDMY + 
Sbjct: 469 TD-VKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVS----NTLVDMYAKC 523

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND-----EMFDRIRQDLV 407
           G + ++      M    +   W  ++ +C +H  D      M  R+R + V
Sbjct: 524 GEMGDSLKVFENMKAR-DIITWNTIIASC-VHSEDCNLGLRMISRMRTEGV 572



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 192/382 (50%), Gaps = 13/382 (3%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           F+   +A + A    +  ++H+ +I  G  H +     L+  Y   +D  S+  +F  + 
Sbjct: 75  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFR-LA 133

Query: 73  FP--DVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLVSHKLG 127
            P  +V  W +II  L+  G   EA+ ++     I ++P+  T  SV++AC+ L+  ++ 
Sbjct: 134 SPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMA 193

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           K+IH   L     +++ + NA++D Y R   L     +F +MP R+VVSW ++I GY   
Sbjct: 194 KSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNAN 253

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G+  EA+ ++    +     P+  T+ +VL AC  + ++  G  +H  I  +  +    +
Sbjct: 254 GYWNEALEIYYRF-RNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIE-KIGIKKDVI 311

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V N +++MY K   +    ++F+ +  +D +SW+T+I G +  G   ++++LF + ++N 
Sbjct: 312 VNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLF-MEMVNQ 370

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTV-YEIVPQMQHYACVVDMYGRAGLLEE 366
             PD +T  +++ AC H G ++ G  +   M T  YE      +   +++MY + G L  
Sbjct: 371 FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASN--ILINMYAKCGNLLA 428

Query: 367 AEAFIREMPIEAEWSVWGALLN 388
           ++     M  +   S W +++N
Sbjct: 429 SQEVFSGMKCKDSVS-WNSMIN 449


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 156/469 (33%), Positives = 265/469 (56%), Gaps = 9/469 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           +LS  SS +  T+   +  C         L +H H+++ G   D F+   L+  Y  +  
Sbjct: 68  VLSQESSPSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGS 127

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSA 117
           +  A ++F+      +  W  +   L+  G  +E + ++     I V+ +  T   VL A
Sbjct: 128 VDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKA 187

Query: 118 C--SSLVSHKL--GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
           C  S   +  L  GK IHAH  R    +++ +   ++D Y R G +    Y+F  MP RN
Sbjct: 188 CVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRN 247

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALSFGKYV 232
           VVSW+ MI  YA+ G   EA+  F+EM  +TK++ PN  T+V+VL AC+S++AL  G+ +
Sbjct: 248 VVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLI 307

Query: 233 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
           H YI  R   S+  ++ +A++ MY +CG + +  +VF+ +  +D +SW+++IS   ++G 
Sbjct: 308 HGYILRRGLDSILPVI-SALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGY 366

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
           GR+A+Q+F  M+ N   P  VTF++++ ACSH GLV++G  LF++M   + I PQ++HYA
Sbjct: 367 GRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYA 426

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           C+VD+ GRA  L+EA   +++M  E    VWG+LL +CRIH N E+ +R  + L   +  
Sbjct: 427 CMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPK 486

Query: 413 SVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           + G + L+++ +A A  W++  +++  +   GL+K  G  W+EV   ++
Sbjct: 487 NAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMY 535


>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial [Vitis vinifera]
 gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
          Length = 700

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 153/454 (33%), Positives = 254/454 (55%), Gaps = 5/454 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YT    + AC+      +   +H +VI+ G   + F+   LL  Y    DI  A  +F
Sbjct: 237 NQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVF 296

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLVSHK 125
           + +   D+VSWT +I G ++ G+ +EA+ +F      D+ PN  T  SVLSAC+   S  
Sbjct: 297 DELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLN 356

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           +G+++H   ++ L   +   +NA++D Y +C  +    Y+F  +  ++V++W ++I GY 
Sbjct: 357 MGRSVHCLGIK-LGSEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYT 415

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G+  EA+ +F +M ++    P+  TLV+VLSAC+S+ A   G  +H Y      LS S
Sbjct: 416 QNGYAYEALELFDQM-RSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGS 474

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             VG A++N Y KCGD   A  +F+ +  K+ I+WS +I G  + G   ++L+LF  M+ 
Sbjct: 475 VYVGTALLNFYAKCGDAESARVIFDEMGEKNTITWSAMIGGYGIQGDCSRSLELFGDMLK 534

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             + P++V F  ++SACSH G++ +G   F  M  VY  VP M+HYAC+VD+  RAG LE
Sbjct: 535 EKLEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYNFVPSMKHYACMVDLLARAGRLE 594

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EA  FI ++PI+ + S+ GA L+ CR+H   ++ +   + ++         + LMSN +A
Sbjct: 595 EALDFIEKIPIQPDVSLLGAFLHGCRLHSRFDLGEVAVRRMLELHPDKACYYVLMSNLYA 654

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPS 459
              RW   N++ + +++ GL K  G S +++  S
Sbjct: 655 SEGRWSQANQVMELMKQRGLAKLPGWSLVDIETS 688



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 121/411 (29%), Positives = 217/411 (52%), Gaps = 13/411 (3%)

Query: 4   CPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFS 63
           C + Y++  F+  LKACS      +  ++H  +++ G   D F+   L+  Y   +++  
Sbjct: 132 CLNEYDNVVFSIVLKACSELRETDEGRKLHCQIVKVGS-PDSFVLTGLVDMYAKCREVED 190

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSS 120
           + ++F+ ++  +VV WT++I G  +    KE + +F  +    V+ N  TL S+++AC+ 
Sbjct: 191 SRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTK 250

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           L +   GK +H + +++  + N  L   +LD Y +CG +     +F ++   ++VSWT M
Sbjct: 251 LGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAM 310

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           I GYA+RG+ +EA+ +F + E+ K+  PN  T  +VLSAC+   +L+ G+ VH  +  + 
Sbjct: 311 IVGYAQRGYPREALKLFTD-ERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHC-LGIKL 368

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
             S      NA+++MY KC  +G A  VF  +  KD I+W+++ISG   NG   +AL+LF
Sbjct: 369 G-SEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELF 427

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
             M  ++V+PD +T ++++SAC+  G    G  L         +   +     +++ Y +
Sbjct: 428 DQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAK 487

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIH----RNDEMF-DRIRQDL 406
            G  E A     EM  E     W A++    I     R+ E+F D +++ L
Sbjct: 488 CGDAESARVIFDEMG-EKNTITWSAMIGGYGIQGDCSRSLELFGDMLKEKL 537



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 105/402 (26%), Positives = 200/402 (49%), Gaps = 34/402 (8%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           +IHA ++ +G   D+  +  L+  Y +   +  A  +F+ +  PD+ SW  +I       
Sbjct: 57  KIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMIRWYFLND 116

Query: 91  FHKEAIDMF------CGIDVKPNANTLVS-VLSACSSLVSHKLGKAIHAHSLRNLNENNI 143
            + E +  +      C   +    N + S VL ACS L     G+ +H   ++  + ++ 
Sbjct: 117 SYSEIVQFYNTRLRKC---LNEYDNVVFSIVLKACSELRETDEGRKLHCQIVKVGSPDSF 173

Query: 144 ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
           +L   ++D Y +C  +     +F ++  RNVV WT+MI GY +    KE + +F  M + 
Sbjct: 174 VL-TGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRM-RE 231

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDV 262
              E N+ TL ++++AC+ + AL  GK+VH Y I + +DL  ++ +   ++++Y KCGD+
Sbjct: 232 GLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDL--NSFLVTPLLDLYFKCGDI 289

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
             A  VF+ L+  D +SW+ +I G A  G  R+AL+LF+      + P+ VT  +++SAC
Sbjct: 290 RDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSAC 349

Query: 323 SHGGLVDQGL------ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPI 376
           +  G ++ G       I   +    +E          +VDMY +  ++ +A  ++ E   
Sbjct: 350 AQTGSLNMGRSVHCLGIKLGSEDATFE--------NALVDMYAKCHMIGDAR-YVFETVF 400

Query: 377 EAEWSVWGALLNACR----IHRNDEMFDRIRQDLVNKKGVSV 414
           + +   W ++++        +   E+FD++R D V    +++
Sbjct: 401 DKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITL 442


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 154/455 (33%), Positives = 252/455 (55%), Gaps = 5/455 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +T    + A +          IHA V +YG  +D  + N+L+  Y+ +  +    ++F
Sbjct: 430 NQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVF 489

Query: 69  NSVVFPDVVSWTTIISGL---SKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHK 125
            +    D++SW  ++SG      C       +        PN  T +S+L +CSSL    
Sbjct: 490 EATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVD 549

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LGK +HA  ++N  + N  +  A++D Y +   L     +F ++ KR++ +WT ++ GYA
Sbjct: 550 LGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYA 609

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G  ++AV  F +M++ +  +PNE TL + LS CS I+ L  G+ +HS ++ +   S  
Sbjct: 610 QDGQGEKAVKCFIQMQR-EGVKPNEFTLASSLSGCSRIATLDSGRQLHS-MAIKAGQSGD 667

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V +A+++MY KCG V  A  VF+ L  +D +SW+T+I G + +G G +AL+ F  M+ 
Sbjct: 668 MFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLD 727

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
               PD+VTFI ++SACSH GL+++G   F ++S +Y I P ++HYAC+VD+ GRAG   
Sbjct: 728 EGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFH 787

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           E E+FI EM + +   +W  +L AC++H N E  +R    L   +      + L+SN FA
Sbjct: 788 EVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFA 847

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
               W+D   +R  +   G+KK+ GCSW+EVN  +
Sbjct: 848 AKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQV 882



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 199/380 (52%), Gaps = 11/380 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +T+  ALKACS+    +   ++HA  I+ G   D+F+ ++L+  Y    ++  A ++F
Sbjct: 228 NEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVF 287

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHK 125
             +   + VSW  +++G ++ G  ++ +++FC   G ++  +  TL +VL  C++  + +
Sbjct: 288 LCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLR 347

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ +H+ ++R   E +  +   ++D Y +CG       +FV++   +VVSW+ +I    
Sbjct: 348 AGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLD 407

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           ++G  +EA  VF+ M  +    PN+ TL +++SA + +  L +G+ +H+ +  +Y     
Sbjct: 408 QKGQSREAAEVFKRMRHSG-VIPNQFTLASLVSAATDLGDLYYGESIHACV-CKYGFEYD 465

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
           N V NA++ MY+K G V    +VF     +D ISW+ ++SG   N      L++F+ M+ 
Sbjct: 466 NTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLA 525

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY--ACVVDMYGRAGL 363
               P+  TFI+++ +CS    VD G    +  + + +       +    +VDMY +   
Sbjct: 526 EGFNPNMYTFISILRSCSSLSDVDLGK---QVHAQIVKNSLDGNDFVGTALVDMYAKNRF 582

Query: 364 LEEAEAFIREMPIEAEWSVW 383
           LE+AE     + I+ +   W
Sbjct: 583 LEDAETIFNRL-IKRDLFAW 601



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 170/317 (53%), Gaps = 5/317 (1%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           ++  L+ C+      +   IH  VI+ G   D  + NSL++ Y        A ++F  + 
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKA 129
             DVVSWT +I+G    G+   A+++FC +    V+ N  T  + L ACS  +  + GK 
Sbjct: 191 ERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQ 250

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           +HA +++  + +++ + +A++D Y +CG +     +F+ MPK+N VSW  ++ G+A+ G 
Sbjct: 251 VHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGD 310

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
            ++ +++F  M  + E   ++ TL  VL  C++   L  G+ VHS ++ R    +   + 
Sbjct: 311 AEKVLNLFCRMTGS-EINFSKFTLSTVLKGCANSGNLRAGQIVHS-LAIRIGCELDEFIS 368

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
             +++MY KCG  G A++VF  +   D +SWS +I+ L   G  R+A ++F  M  + V 
Sbjct: 369 CCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVI 428

Query: 310 PDDVTFIALISACSHGG 326
           P+  T  +L+SA +  G
Sbjct: 429 PNQFTLASLVSAATDLG 445



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 189/365 (51%), Gaps = 6/365 (1%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           +++ +T +  LK C+ +   +    +H+  I  G   D FI   L+  Y        A +
Sbjct: 327 NFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALK 386

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVS 123
           +F  +  PDVVSW+ II+ L + G  +EA ++F  +    V PN  TL S++SA + L  
Sbjct: 387 VFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGD 446

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
              G++IHA   +   E +  + NA++  Y++ GS+     +F     R+++SW  ++ G
Sbjct: 447 LYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSG 506

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           + +   C   + +F +M   +   PN  T +++L +CSS+S +  GK VH+ I  +  L 
Sbjct: 507 FHDNETCDTGLRIFNQM-LAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQI-VKNSLD 564

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
            ++ VG A+++MY K   +  A  +FN L  +D  +W+ +++G A +G G +A++ F  M
Sbjct: 565 GNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQM 624

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
               V P++ T  + +S CS    +D G  L  +M+        M   + +VDMY + G 
Sbjct: 625 QREGVKPNEFTLASSLSGCSRIATLDSGRQL-HSMAIKAGQSGDMFVASALVDMYAKCGC 683

Query: 364 LEEAE 368
           +E+AE
Sbjct: 684 VEDAE 688



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 162/331 (48%), Gaps = 15/331 (4%)

Query: 103 DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC 162
           D K        +L  C+S      GKAIH   +++    +  L N++++ Y +CGS    
Sbjct: 123 DSKGRLRQYSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYA 182

Query: 163 GYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS 222
             +F ++P+R+VVSWT +I G+   G+   AV++F EM + +  E NE T    L ACS 
Sbjct: 183 CKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRR-EGVEANEFTYATALKACSM 241

Query: 223 ISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWST 282
              L FGK VH+      D S    VG+A++++Y KCG++ +A +VF  +  ++ +SW+ 
Sbjct: 242 CLDLEFGKQVHAEAIKVGDFS-DLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNA 300

Query: 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 342
           +++G A  G   + L LF  M  + +     T   ++  C++ G +  G I+    S   
Sbjct: 301 LLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVH---SLAI 357

Query: 343 EIVPQMQHY--ACVVDMYGRAGLLEEA-EAFIR-EMPIEAEWSVWGALLNACRIHRN-DE 397
            I  ++  +   C+VDMY + GL  +A + F+R E P    WS     L+     R   E
Sbjct: 358 RIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAE 417

Query: 398 MFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
           +F R+R       GV    F L S   A  D
Sbjct: 418 VFKRMRH-----SGVIPNQFTLASLVSAATD 443


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 140/428 (32%), Positives = 261/428 (60%), Gaps = 6/428 (1%)

Query: 32   IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
            +H   ++     ++   N+LL  Y    ++  A ++F  +    +VSWT+ I+   + G 
Sbjct: 593  LHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGL 652

Query: 92   HKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148
            + +AI +F  +    V+P+  T+ S++ AC+   S   G+ +H++ ++N   +N+ + NA
Sbjct: 653  YSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNA 712

Query: 149  ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
            +++ Y +CGS+     +F K+P +++VSW TMIGGY++     EA+ +F +M+K  + +P
Sbjct: 713  LINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQK--QFKP 770

Query: 209  NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
            ++ T+  VL AC+ ++AL  G+ +H +I  R   S  + V  A+++MY KCG + +A  +
Sbjct: 771  DDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLH-VACALVDMYAKCGLLVLAQLL 829

Query: 269  FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
            F+M+  KD ISW+ +I+G  M+G G +A+  F+ M I  + PD+ +F  +++ACSH GL+
Sbjct: 830  FDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLL 889

Query: 329  DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
            ++G   F +M     + P+++HYACVVD+  R G L +A  FI  MPI+ + ++WG LL+
Sbjct: 890  NEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLS 949

Query: 389  ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
             CRIH + ++ +++ + +   +  +   + +++N +A A++WE+  K+R  +++ G K+ 
Sbjct: 950  GCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQN 1009

Query: 449  TGCSWIEV 456
             GCSWIEV
Sbjct: 1010 PGCSWIEV 1017



 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 126/385 (32%), Positives = 206/385 (53%), Gaps = 21/385 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YTFT  LK  +     ++   +H +V++ G   +  + NSL+  Y     + SAH +F
Sbjct: 469 NCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLF 528

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLVSHK 125
           + +  PDVVSW ++I+G    GF    +++F     + V+ +  TLVSVL A +++ +  
Sbjct: 529 DELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLS 588

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG+A+H   ++      ++  N +LD Y +CG+L     +FVKM    +VSWT+ I  Y 
Sbjct: 589 LGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYV 648

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G   +A+ +F EM+ +K   P+  T+ +++ AC+  S+L  G+ VHSY+  +  +  +
Sbjct: 649 REGLYSDAIGLFDEMQ-SKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYV-IKNGMGSN 706

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V NA+INMY KCG V  A  VF+ +  KD +SW+T+I G + N    +AL+LF L + 
Sbjct: 707 LPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELF-LDMQ 765

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGL-----ILFKAMSTVYEIVPQMQHYAC-VVDMYG 359
               PDD+T   ++ AC+    +D+G      IL +   +         H AC +VDMY 
Sbjct: 766 KQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDL-------HVACALVDMYA 818

Query: 360 RAGLLEEAEAFIREMPIEA--EWSV 382
           + GLL  A+     +P +    W+V
Sbjct: 819 KCGLLVLAQLLFDMIPKKDLISWTV 843



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 176/374 (47%), Gaps = 16/374 (4%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           ++   L+ C+     +    +H+ +I  G   D  +   L+  YV   D+    +IF+ +
Sbjct: 371 SYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKI 430

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
           +   V  W  ++S  +K G  +E++ +F  +    V  N  T   VL   ++L   K  K
Sbjct: 431 MNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECK 490

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H + L+    +N  + N+++  Y + G + S   LF ++ + +VVSW +MI G    G
Sbjct: 491 RVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNG 550

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
           F    + +F +M      E +  TLV+VL A ++I  LS G+ +H +   +   S   + 
Sbjct: 551 FSGNGLEIFIQM-LILGVEVDLTTLVSVLVAWANIGNLSLGRALHGF-GVKACFSEEVVF 608

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            N +++MY KCG++  A +VF  +     +SW++ I+     G    A+ LF  M    V
Sbjct: 609 SNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGV 668

Query: 309 FPDDVTFIALISACSHGGLVDQG-----LILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
            PD  T  +++ AC+    +D+G      ++   M +   +   +      ++MY + G 
Sbjct: 669 RPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNAL------INMYAKCGS 722

Query: 364 LEEAEAFIREMPIE 377
           +EEA     ++P++
Sbjct: 723 VEEARLVFSKIPVK 736



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 131/267 (49%), Gaps = 8/267 (2%)

Query: 109 NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168
           N+  SVL  C+   S + GK +H+  + N    +  L   ++  Y+ CG L     +F K
Sbjct: 370 NSYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDK 429

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           +    V  W  ++  YA+ G  +E+VS+F++M+K      N  T   VL   +++  +  
Sbjct: 430 IMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLG-VVGNCYTFTCVLKCFAALGKVKE 488

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
            K VH Y+  +     +  V N++I  Y K G V  A  +F+ L+  D +SW+++I+G  
Sbjct: 489 CKRVHGYV-LKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCV 547

Query: 289 MNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL--FKAMSTVYEIVP 346
           +NG     L++F  M+I  V  D  T ++++ A ++ G +  G  L  F   +   E   
Sbjct: 548 VNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSE--- 604

Query: 347 QMQHYACVVDMYGRAGLLEEA-EAFIR 372
           ++     ++DMY + G L  A E F++
Sbjct: 605 EVVFSNTLLDMYSKCGNLNGATEVFVK 631



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 7/178 (3%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L AC+      K  EIH H++  G+  D+ +  +L+  Y     +  A  +F+ +
Sbjct: 774 TMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMI 833

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              D++SWT +I+G    GF  EAI  F  +    ++P+ ++   +L+ACS       G 
Sbjct: 834 PKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGW 893

Query: 129 AIHAHSLRNLNENNIILDN--AILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIGG 183
               +S+RN       L++   ++D   R G+L+        MP K +   W  ++ G
Sbjct: 894 KFF-NSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSG 950



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 108/255 (42%), Gaps = 36/255 (14%)

Query: 164 YLFVKMPKRNVVSWTTM--------------------IGGYAERGFCKEAVSVFQEMEKT 203
           ++F K P+R  +  +T+                    I  + E G  + A+ +   + K+
Sbjct: 306 FIFFKQPRRTCLLHSTVCVSPSFTNTTHSVTQNQNAKINKFCEMGDLRNAIEL---LTKS 362

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
           K  E    +  +VL  C+   +L  GK VHS I +   +S+   +G  ++ MYV CGD+ 
Sbjct: 363 KSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISN-GISIDEALGAKLVFMYVNCGDLV 421

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
              ++F+ +       W+ ++S  A  G  R+++ LF  M    V  +  TF  ++   +
Sbjct: 422 QGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFA 481

Query: 324 HGGLVDQ-----GLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEA 378
             G V +     G +L     +   +V  +      +  Y + G +E A     E+  E 
Sbjct: 482 ALGKVKECKRVHGYVLKLGFGSNTAVVNSL------IAAYFKFGGVESAHNLFDELS-EP 534

Query: 379 EWSVWGALLNACRIH 393
           +   W +++N C ++
Sbjct: 535 DVVSWNSMINGCVVN 549


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 162/493 (32%), Positives = 270/493 (54%), Gaps = 43/493 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N Y+F  AL AC+     +   +IH+ V    +L D+++ ++L+  Y     +  A  +F
Sbjct: 150 NEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVF 209

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLVS 123
           + +     VSW ++I+   + G   EA+ +F     CG  V+P+  TL SV+SAC+++ +
Sbjct: 210 DEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCG--VEPDEVTLASVVSACATISA 267

Query: 124 HKLGKAIHAHSLR-NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
            K G+ IHA  ++ +   N++IL NA+LD Y +C  +     +F  MP R+VVS T+M+ 
Sbjct: 268 IKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVS 327

Query: 183 GYAERGFCKEAVSVFQEME------------------------------KTKEAEPNEAT 212
           GYA+    K A  +F  M                               K +   P   T
Sbjct: 328 GYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYT 387

Query: 213 LVNVLSACSSISALSFGKYVHSYI-----STRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
             N+L+AC++++ L  G+  HS++       +Y       VGN++I+MY+KCG V    +
Sbjct: 388 FGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCR 447

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           VF  +  KD +SW+ +I G A NG G +AL++F  M+ +   PD VT I ++ ACSH GL
Sbjct: 448 VFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGL 507

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           +D+G   F++M+  + ++P   HY C+VD+ GRAG LEEA+  I EM ++ +  VWG+LL
Sbjct: 508 LDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLL 567

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
            AC++HRN ++ + + + L+     + G + L+SN +A    W++  ++R  +R+ G+ K
Sbjct: 568 AACKVHRNIQLGEYVVKKLLEVDPENSGPYVLLSNMYAENRDWKNVVRVRKLMRQRGVVK 627

Query: 448 KTGCSWIEVNPSI 460
           + GCSWIE+   +
Sbjct: 628 QPGCSWIEIQGEL 640



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/360 (29%), Positives = 182/360 (50%), Gaps = 39/360 (10%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFY---------------VT 57
           F++ L  C+ +   +    +HA +I+     + FIQN L+  Y               + 
Sbjct: 22  FSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRML 81

Query: 58  VKDIFS----------------AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC- 100
            ++IFS                A  IF  +   D  SW ++ISG  + G   EA+  F  
Sbjct: 82  ERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQ 141

Query: 101 --GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGS 158
             G     N  +  S LSAC+ L   KLG  IH+   R+   +++ + +A++D Y +CG 
Sbjct: 142 MHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGR 201

Query: 159 LASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLS 218
           +     +F +M  R+ VSW ++I  Y + G   EA+ +F EM K    EP+E TL +V+S
Sbjct: 202 VEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCG-VEPDEVTLASVVS 260

Query: 219 ACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI 278
           AC++ISA+  G+ +H+ +    +     ++GNA+++MY KC  +  A  +F+M+  +  +
Sbjct: 261 ACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVV 320

Query: 279 SWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM 338
           S ++++SG A     + A  +FS M++     D +T+ ALI+ C+  G  ++ LILF+ +
Sbjct: 321 SETSMVSGYAKASKVKVARYMFSNMMVK----DVITWNALIAGCTQNGENEEALILFRLL 376



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 143/302 (47%), Gaps = 31/302 (10%)

Query: 107 NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLF 166
           +++    +L+ C+   S +    +HA  +++   +   + N ++D Y +CG +     LF
Sbjct: 18  DSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLF 77

Query: 167 VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE------------------- 207
            +M +RN+ SW ++I  + + GF  +AV +F++M +  +                     
Sbjct: 78  DRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALV 137

Query: 208 -----------PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMY 256
                       NE +  + LSAC+ +  L  G  +HS +     LS    +G+A+++MY
Sbjct: 138 YFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLS-DVYMGSALVDMY 196

Query: 257 VKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFI 316
            KCG V  A  VF+ +  + ++SW+++I+    NG   +AL++F  MI   V PD+VT  
Sbjct: 197 SKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLA 256

Query: 317 ALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPI 376
           +++SAC+    + +G  +   +    E    +     ++DMY +   + EA      MPI
Sbjct: 257 SVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPI 316

Query: 377 EA 378
            +
Sbjct: 317 RS 318



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 161/328 (49%), Gaps = 43/328 (13%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHL-HDIFIQNSLLHFYVTVK 59
           M+ C    +  T    + AC+     ++  +IHA V++     +D+ + N+LL  Y    
Sbjct: 243 MIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCN 302

Query: 60  DIFSAHQIFN-------------------------------SVVFPDVVSWTTIISGLSK 88
            I  A  IF+                               +++  DV++W  +I+G ++
Sbjct: 303 RINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQ 362

Query: 89  CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRN------LN 139
            G ++EA+ +F  +    V P   T  ++L+AC++L   +LG+  H+H L++        
Sbjct: 363 NGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGE 422

Query: 140 ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQE 199
           ++++ + N+++D Y++CGS+ +   +F  M +++ VSW  MI GYA+ GF  +A+ VF +
Sbjct: 423 DSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCK 482

Query: 200 MEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKC 259
           M ++ EA P+  T++ VL ACS    L  G+Y    ++ ++ L         ++++  + 
Sbjct: 483 MLESGEA-PDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRA 541

Query: 260 GDVGIAIQVFNMLAYK-DKISWSTVISG 286
           G +  A  +   ++ + D I W ++++ 
Sbjct: 542 GYLEEAKNLIEEMSMQPDAIVWGSLLAA 569


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 164/452 (36%), Positives = 258/452 (57%), Gaps = 44/452 (9%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID 103
           +I   NS++     +  +  A ++FN +   D+VSW+ +ISG  + G ++EA+ MF    
Sbjct: 237 NIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMF---- 292

Query: 104 VKPNANTL-------VSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFY--- 153
           ++ NAN +       VSVLSAC+ L   K GK IH   +R   E+ + L NA++  Y   
Sbjct: 293 IEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGS 352

Query: 154 ----------------------------IRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
                                       ++CGS+     LF  MP++++VSW+ +I GYA
Sbjct: 353 GEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYA 412

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +     E +++F EM+   +  P+E  LV+V+SAC+ ++AL  GK+VH+YI  +  L V+
Sbjct: 413 QHDCFSETLALFHEMQ-LGQIRPDETILVSVISACTHLAALDQGKWVHAYIR-KNGLKVN 470

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
            ++G  +++MY+KCG V  A++VFN +  K   SW+ +I GLA+NG   ++L +FS M  
Sbjct: 471 VILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKN 530

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
           N V P+++TF+ ++ AC H GLVD+G   F +M   + I P ++HY C+VD+ GRAGLL 
Sbjct: 531 NGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLN 590

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EAE  I  MP+  + + WGALL AC+ H + EM +R+ + L+  +    G   L+SN FA
Sbjct: 591 EAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFA 650

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
               WED  ++R  +++ G+ K  GCS IE N
Sbjct: 651 SKGDWEDVLEVRGMMKQQGVVKTPGCSLIEAN 682



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 117/248 (47%), Gaps = 35/248 (14%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV----- 71
           L AC+     +    IH  VI  G    + +QN+L+H Y    +I  A ++FN       
Sbjct: 311 LSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQ 370

Query: 72  ------------------------VFP--DVVSWTTIISGLSKCGFHKEAIDMFCGI--- 102
                                   V P  D+VSW+ +ISG ++     E + +F  +   
Sbjct: 371 ISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLG 430

Query: 103 DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC 162
            ++P+   LVSV+SAC+ L +   GK +HA+  +N  + N+IL   +LD Y++CG + + 
Sbjct: 431 QIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENA 490

Query: 163 GYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS 222
             +F  M ++ V SW  +I G A  G  + ++ +F EM K     PNE T + VL AC  
Sbjct: 491 LEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEM-KNNGVIPNEITFMGVLGACRH 549

Query: 223 ISALSFGK 230
           +  +  G+
Sbjct: 550 MGLVDEGR 557



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 151/338 (44%), Gaps = 53/338 (15%)

Query: 6   SSYNHYTFTQALKACSLAHPH-------QKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV 58
           S++NH    +     S+   H       ++   I + +I  G + D F  + LL F    
Sbjct: 27  STFNHKPTFKPTITLSILETHLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDS 86

Query: 59  KDIFSAH--QIFNSVVFPDVVSWTTIISGLSKCGFHKEAI---DMFCGIDVKPNANTLVS 113
             I   +  QIF+ +   +   W T++    +    ++A+    +    +V P+  T   
Sbjct: 87  PFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPL 146

Query: 114 VLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
           V+ AC+  +    GK IH H L+   ++++ + N +++ Y  CG++     LF + P  +
Sbjct: 147 VVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLD 206

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
            VSW +++ GY ++G  +EA  +F +M +            N++++              
Sbjct: 207 SVSWNSILAGYVKKGDVEEAKLIFDQMPQR-----------NIVAS-------------- 241

Query: 234 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG 293
                           N++I +  K G V  A ++FN +  KD +SWS +ISG   NG  
Sbjct: 242 ----------------NSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMY 285

Query: 294 RQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
            +AL +F  M  N +  D+V  ++++SAC+H  +V  G
Sbjct: 286 EEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTG 323



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 13/185 (7%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
               + AC+      +   +HA++ + G   ++ +  +LL  Y+    + +A ++FN + 
Sbjct: 439 LVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGME 498

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKA 129
              V SW  +I GL+  G  + ++DMF  +    V PN  T + VL AC  +     G+ 
Sbjct: 499 EKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRC 558

Query: 130 -----IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIGG 183
                I  H +    E N+     ++D   R G L     L   MP   +V +W  ++G 
Sbjct: 559 HFASMIEKHGI----EPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGA 614

Query: 184 YAERG 188
             + G
Sbjct: 615 CKKHG 619


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 152/457 (33%), Positives = 261/457 (57%), Gaps = 14/457 (3%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML   +  + +    AL ACS+ H  +  +EIH  VI      DI +Q SL+  Y     
Sbjct: 216 MLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGK 275

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSS 120
           +  A ++FN +   ++V+W  +I G+ +               V P+  T++++L +CS 
Sbjct: 276 VDYAERVFNRIYSKNIVAWNAMIGGMQE------------DDKVIPDVITMINLLPSCSQ 323

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
             +   GK+IH  ++R +    ++L+ A++D Y +CG L    ++F +M ++N+VSW TM
Sbjct: 324 SGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTM 383

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           +  Y +    KEA+ +FQ +   +  +P+  T+ +VL A + +++ S GK +HSYI  + 
Sbjct: 384 VAAYVQNEQYKEALKMFQHI-LNEPLKPDAITIASVLPAVAELASRSEGKQIHSYI-MKL 441

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
            L  +  + NA++ MY KCGD+  A + F+ +  KD +SW+T+I   A++G GR ++Q F
Sbjct: 442 GLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFF 501

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
           S M      P+  TF++L++ACS  GL+D+G   F +M   Y I P ++HY C++D+ GR
Sbjct: 502 SEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCMLDLLGR 561

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
            G L+EA+ FI EMP+     +WG+LL A R H +  + +   + +++ K  + G + L+
Sbjct: 562 NGNLDEAKCFIEEMPLVPTARIWGSLLAASRNHNDVVLAELAARHILSLKHDNTGCYVLL 621

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           SN +A A RWED ++I+  ++  GL K  GCS +++N
Sbjct: 622 SNMYAEAGRWEDVDRIKYLMKEQGLVKTVGCSMVDIN 658



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/390 (24%), Positives = 192/390 (49%), Gaps = 26/390 (6%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +++TF   +KAC          ++H  +I+ G   D+++ N L+  Y+ +  I  A ++F
Sbjct: 123 DNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVF 182

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHK 125
           + +   D+VSW +++SG    G    ++  F     +  K +   ++S L ACS     +
Sbjct: 183 DEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLR 242

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G  IH   +R+  E +I++  +++D Y +CG +     +F ++  +N+V+W  MIGG  
Sbjct: 243 SGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGG-- 300

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
                         M++  +  P+  T++N+L +CS   AL  GK +H +   +  L   
Sbjct: 301 --------------MQEDDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYL 346

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
            ++  A+++MY KCG++ +A  VFN +  K+ +SW+T+++    N   ++AL++F  ++ 
Sbjct: 347 -VLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILN 405

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA--CVVDMYGRAGL 363
             + PD +T  +++ A +      +G    +  S + ++      +    +V MY + G 
Sbjct: 406 EPLKPDAITIASVLPAVAELASRSEGK---QIHSYIMKLGLGSNTFISNAIVYMYAKCGD 462

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           L+ A  F   M  +   S W  ++ A  IH
Sbjct: 463 LQTAREFFDGMVCKDVVS-WNTMIMAYAIH 491



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 162/330 (49%), Gaps = 22/330 (6%)

Query: 63  SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACS 119
           +A  +F  +   D   W  II G +  G  +EAID +  ++   ++ +  T   V+ AC 
Sbjct: 76  NALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVIKACG 135

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
            L++  +G+ +H   ++   + ++ + N ++D Y++ G +     +F +MP R++VSW +
Sbjct: 136 ELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNS 195

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           M+ GY   G    ++  F+EM +    + +   +++ L ACS    L  G  +H  +  R
Sbjct: 196 MVSGYQIDGDGLSSLMCFKEMLRLGN-KADRFGMISALGACSIEHCLRSGMEIHCQV-IR 253

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
            +L +  +V  ++I+MY KCG V  A +VFN +  K+ ++W+ +I G+  +         
Sbjct: 254 SELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQED--------- 304

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
                 + V PD +T I L+ +CS  G + +G  +    +     +P +     +VDMYG
Sbjct: 305 ------DKVIPDVITMINLLPSCSQSGALLEGKSI-HGFAIRKMFLPYLVLETALVDMYG 357

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           + G L+ AE    +M  E     W  ++ A
Sbjct: 358 KCGELKLAEHVFNQMN-EKNMVSWNTMVAA 386



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 116/232 (50%), Gaps = 10/232 (4%)

Query: 139 NENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQ 198
           N+ NI  D   L  ++  G + +   +F KM   +   W  +I GY   G  +EA+  + 
Sbjct: 57  NDLNITRD---LCGFVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYY 113

Query: 199 EMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH-SYISTRYDLSVSNLVGNAVINMYV 257
            ME  +    +  T   V+ AC  + AL  G+ VH   I   +DL V   V N +I+MY+
Sbjct: 114 RME-CEGIRSDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDV--YVCNFLIDMYL 170

Query: 258 KCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIA 317
           K G + +A +VF+ +  +D +SW++++SG  ++G G  +L  F  M+      D    I+
Sbjct: 171 KIGFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMIS 230

Query: 318 LISACSHGGLVDQGL-ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            + ACS    +  G+ I  + + +  E+   +Q    ++DMYG+ G ++ AE
Sbjct: 231 ALGACSIEHCLRSGMEIHCQVIRSELELDIMVQ--TSLIDMYGKCGKVDYAE 280



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 69/139 (49%), Gaps = 6/139 (4%)

Query: 256 YVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTF 315
           +V+ G +G A+ +F  + + D   W+ +I G   NG  ++A+  +  M    +  D+ TF
Sbjct: 68  FVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTF 127

Query: 316 IALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC--VVDMYGRAGLLEEAEAFIRE 373
             +I AC   G +   ++  K    + +I   +  Y C  ++DMY + G +E AE    E
Sbjct: 128 PFVIKAC---GELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDE 184

Query: 374 MPIEAEWSVWGALLNACRI 392
           MP+  +   W ++++  +I
Sbjct: 185 MPVR-DLVSWNSMVSGYQI 202


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 161/469 (34%), Positives = 261/469 (55%), Gaps = 9/469 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           +L C  +    TF   + +C+  +     L++H  +++ G   D F+   L++ Y  +  
Sbjct: 69  LLCCEPNPTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGS 128

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSA 117
           I  A ++F+      +  W  +   L+  G  KE +D++     I    +  T   VL A
Sbjct: 129 IDRALKVFDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKA 188

Query: 118 CS----SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
           C     S+   + GK IHAH LR+  E NI +   +LD Y + GS++    +F  MP +N
Sbjct: 189 CVVSELSVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKN 248

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEME-KTKEAEPNEATLVNVLSACSSISALSFGKYV 232
            VSW+ MI  +A+     +A+ +FQ M  +   + PN  T+VN+L AC+ ++AL  GK +
Sbjct: 249 FVSWSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLI 308

Query: 233 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
           H YI  R   S+  ++ NA+I MY +CG+V +  +VF+ +  +D +SW+++IS   M+G 
Sbjct: 309 HGYILRRQLDSILPVL-NALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGF 367

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
           G++A+Q+F  MI   V P  ++FI ++ ACSH GLV++G ILF++M + Y I P M+HYA
Sbjct: 368 GKKAIQIFENMIHQGVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYA 427

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           C+VD+ GRA  L EA   I +M  E   +VWG+LL +CRIH N E+ +R    L   +  
Sbjct: 428 CMVDLLGRANRLGEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTVLFELEPR 487

Query: 413 SVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           + G + L+++ +A A  W +   +   +   GL+K  GCSWIEV   ++
Sbjct: 488 NAGNYVLLADIYAEAKLWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVY 536


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 155/447 (34%), Positives = 255/447 (57%), Gaps = 13/447 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T +  L  C+ ++     + +H +VI++G   D+F+ N+L++ Y     +  A ++F+ +
Sbjct: 250 TVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGM 309

Query: 72  VFPDVVSWTTIISG-------LSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSH 124
              D+VSW +II+        ++  GF KE   +F G+  +P+  T+VS+ S    L   
Sbjct: 310 EVRDLVSWNSIIAAYEQNDDPVTALGFFKEM--LFVGM--RPDLLTVVSLASIFGQLSDR 365

Query: 125 KLGKAIHAHSLR-NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
           ++G+A+H   +R    E +I++ NA+++ Y + GS+     +F ++P R+V+SW T+I G
Sbjct: 366 RIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITG 425

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           YA+ G   EA+  +  ME+ +   PN+ T V++L A S + AL  G  +H  +  +  L 
Sbjct: 426 YAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRL-IKNCLF 484

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           +   V   +I+MY KCG +  A+ +F  +  +  + W+ +IS L ++G G +ALQLF  M
Sbjct: 485 LDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDM 544

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
             + V  D +TF++L+SACSH GLVD+    F  M   Y I P ++HY C+VD++GRAG 
Sbjct: 545 RADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGY 604

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           LE+A   +  MPI+A+ S+WG LL ACRIH N E+       L+     +VG + L+SN 
Sbjct: 605 LEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASDRLLEVDSENVGYYVLLSNI 664

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTG 450
           +A   +WE   K+R   R  GL+K  G
Sbjct: 665 YANVGKWEGAVKVRSLARDRGLRKTPG 691



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 122/414 (29%), Positives = 213/414 (51%), Gaps = 16/414 (3%)

Query: 9   NHYTFTQALKAC-SLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           + YTF   LKAC SLA   +    +H  V++ G  HD+++  SL+H Y     +  AH++
Sbjct: 149 DFYTFPPVLKACLSLADGEK----MHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKV 204

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAI---DMFCGIDVKPNANTLVSVLSACSSLVSH 124
           F  +   DV SW  +ISG  + G   EA+   D     +VK +  T+ S+L  C+     
Sbjct: 205 FVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDV 264

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
             G  +H + +++  E+++ + NA+++ Y + G L     +F  M  R++VSW ++I  Y
Sbjct: 265 VGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAY 324

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
            +      A+  F+EM       P+  T+V++ S    +S    G+ VH ++     L V
Sbjct: 325 EQNDDPVTALGFFKEMLFVG-MRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEV 383

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
             ++GNA++NMY K G +  A  VF  L  +D ISW+T+I+G A NG   +A+  +++M 
Sbjct: 384 DIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMME 443

Query: 305 I-NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
               + P+  T+++++ A SH G + QG+ +   +      +       C++DMYG+ G 
Sbjct: 444 EGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVA-TCLIDMYGKCGR 502

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDRIRQDLVNKKGVS 413
           LE+A +   E+P E     W A++++  IH + E    +F  +R D V    ++
Sbjct: 503 LEDAMSLFYEIPQETSVP-WNAIISSLGIHGHGEKALQLFKDMRADGVKADHIT 555



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 178/358 (49%), Gaps = 23/358 (6%)

Query: 29  ALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           A ++HA ++  G   D+ +   L+  Y T+ D+  +   F  +   ++ SW +++S   +
Sbjct: 67  AKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVR 126

Query: 89  CGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
            G +++++D    +     V+P+  T   VL AC SL     G+ +H   L+   E+++ 
Sbjct: 127 RGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD---GEKMHCWVLKMGFEHDVY 183

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           +  +++  Y R G++     +FV MP R+V SW  MI G+ + G   EA+ V   M KT+
Sbjct: 184 VAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRM-KTE 242

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
           E + +  T+ ++L  C+  + +  G  VH Y+  ++ L     V NA+INMY K G +  
Sbjct: 243 EVKMDTVTVSSMLPICAQSNDVVGGVLVHLYV-IKHGLESDVFVSNALINMYSKFGRLQD 301

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
           A +VF+ +  +D +SW+++I+    N     AL  F  M+   + PD +T ++L S    
Sbjct: 302 AQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASI--F 359

Query: 325 GGLVDQGLILFKAMSTVYEIVPQMQHYA-------CVVDMYGRAGLLEEAEAFIREMP 375
           G L D+     +    V+  V + +           +V+MY + G ++ A A   ++P
Sbjct: 360 GQLSDR-----RIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLP 412



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 135/288 (46%), Gaps = 19/288 (6%)

Query: 114 VLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
           V  +C+++    + K +HA  L      +++L   ++  Y   G L+     F  + ++N
Sbjct: 57  VFRSCTNI---NVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKN 113

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
           + SW +M+  Y  RG  ++++    E+       P+  T   VL AC S   L+ G+ +H
Sbjct: 114 IFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLS---LADGEKMH 170

Query: 234 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG 293
            ++  +        V  ++I++Y + G V +A +VF  +  +D  SW+ +ISG   NG  
Sbjct: 171 CWV-LKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNV 229

Query: 294 RQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
            +AL++   M    V  D VT  +++  C+    V  G+++      +Y I   ++    
Sbjct: 230 AEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVH-----LYVIKHGLESDVF 284

Query: 354 V----VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
           V    ++MY + G L++A+     M +  +   W +++ A    +ND+
Sbjct: 285 VSNALINMYSKFGRLQDAQRVFDGMEVR-DLVSWNSIIAA--YEQNDD 329



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 3/114 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T+   L A S     Q+ ++IH  +I+     D+F+   L+  Y     +  A  +F
Sbjct: 451 NQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLF 510

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 119
             +     V W  IIS L   G  ++A+ +F  +    VK +  T VS+LSACS
Sbjct: 511 YEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACS 564


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 175/483 (36%), Positives = 260/483 (53%), Gaps = 54/483 (11%)

Query: 27  QKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV--KDIFSAHQIFNSVVFPDVVSWTTIIS 84
           Q   ++HA +I+   + D      LL F      +D+  A +IF S+  P+  S+ T+I 
Sbjct: 25  QDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLIR 84

Query: 85  GLSKCGFHKEA----IDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIH--------- 131
            LS+     +A    I+M     V+PN  T  SV  AC      + G+ +H         
Sbjct: 85  ALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLD 144

Query: 132 ---------------------AHSL----------------RNLNENNIILDNAILDFYI 154
                                AH L                +   + +++L N ++D Y+
Sbjct: 145 SDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYV 204

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           R G L     LF +MP+R+VVSW  MI GYA+ G  KEAV VF+EM+   E  PN  TLV
Sbjct: 205 RIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMA-EVPPNYVTLV 263

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
           +VL A S + AL  GK+VH Y + R ++ V +++G+A+I+MY KCG +  A+QVF  L  
Sbjct: 264 SVLPAMSRLGALELGKWVHLY-AVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPK 322

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           ++ ++WST+I+GLAM+G  +  L  F  M    V P DVT+I L+SACSH GLV++G   
Sbjct: 323 RNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWF 382

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F  M  V  + P+++HY C+VD+ GRAGLLEE+E  I  MPI+ +  +W ALL AC++H 
Sbjct: 383 FDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHG 442

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           N EM  R+ + L+       G++  +SN +A    WE   K+R  ++ M ++K  GCSWI
Sbjct: 443 NVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGCSWI 502

Query: 455 EVN 457
           E++
Sbjct: 503 ELD 505



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 158/339 (46%), Gaps = 51/339 (15%)

Query: 3   SCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIF 62
            C    N +TF    KAC  A   ++  ++H   +++G   D F+ ++++  Y++   + 
Sbjct: 105 DCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVME 164

Query: 63  SAHQIFNSVVFPD----------------------------------------------V 76
            AH++F   VF D                                              V
Sbjct: 165 DAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSV 224

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAH 133
           VSW  +I+G ++ G  KEA+++F  +   +V PN  TLVSVL A S L + +LGK +H +
Sbjct: 225 VSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLY 284

Query: 134 SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
           ++RN    + +L +A++D Y +CGS+     +F  +PKRNVV+W+T+I G A  G  K+ 
Sbjct: 285 AVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDT 344

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVI 253
           +  F++ME+     P++ T + +LSACS    ++ G++   ++     L         ++
Sbjct: 345 LDHFEDMERAG-VMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMV 403

Query: 254 NMYVKCG-DVGIAIQVFNMLAYKDKISWSTVISGLAMNG 291
           ++  + G        + NM    D + W  ++    M+G
Sbjct: 404 DLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHG 442



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 108/255 (42%), Gaps = 6/255 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N+ T    L A S     +    +H + +      D  + ++L+  Y     I  A Q+F
Sbjct: 258 NYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVF 317

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   +VV+W+TII+GL+  G  K+ +D F  ++   V P+  T + +LSACS      
Sbjct: 318 EGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVN 377

Query: 126 LGKAIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIGG 183
            G+    H +R    E  I     ++D   R G L     L + MP K + V W  ++G 
Sbjct: 378 EGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGA 437

Query: 184 YAERGFCKEAVSVFQE-MEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
               G  +    V +  ME       +   L N+ ++  +   ++  + +   +  R D 
Sbjct: 438 CKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKDP 497

Query: 243 SVSNLVGNAVINMYV 257
             S +  + VI+ ++
Sbjct: 498 GCSWIELDGVIHEFL 512


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 159/448 (35%), Positives = 257/448 (57%), Gaps = 5/448 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T+   L AC      +K  +IHAH++E  +  D+ +  +L   Y+       A ++F  +
Sbjct: 232 TYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECL 291

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
            + DV++W T+I G    G  +EA   F  +    V P+  T  +VLSAC+       GK
Sbjct: 292 SYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGK 351

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IHA + ++   +++   NA+++ Y + GS+     +F +MPKR+VVSWTT++G YA+  
Sbjct: 352 EIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCD 411

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
              E+ + F++M + +  + N+ T + VL ACS+  AL +GK +H+ +  +  L     V
Sbjct: 412 QVVESFTTFKQMLQ-QGVKANKITYMCVLKACSNPVALKWGKEIHAEV-VKAGLLADLAV 469

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            NA+++MY KCG V  AI+VF  ++ +D ++W+T+I GL  NG G +ALQ + +M    +
Sbjct: 470 TNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGM 529

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            P+  TF+ ++SAC    LV++G   F  MS  Y IVP  +HYAC+VD+  RAG L EAE
Sbjct: 530 RPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAE 589

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
             I  +P++   ++WGALL ACRIH N E+ +R  +  +  +  + G +  +S  +A A 
Sbjct: 590 DVILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAG 649

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
            W D  K+R  ++  G+KK+ G SWIE+
Sbjct: 650 MWRDVAKLRKFMKERGVKKEPGRSWIEI 677



 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 199/371 (53%), Gaps = 8/371 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + Y + + L++C  A       ++H H++  G   +++I N+LL  Y     +  A Q+F
Sbjct: 27  DSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLF 86

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           +      VVSW  +ISG +  G  +EA ++F  +    ++P+  T VS+LSACSS     
Sbjct: 87  DKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLN 146

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ IH   +     N+  + NA++  Y +CGS+     +F  M  R+ VSWTT+ G YA
Sbjct: 147 WGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYA 206

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSV 244
           E G+ +E++  +  M + +   P+  T +NVLSAC S++AL  GK +H++I  + Y   V
Sbjct: 207 ESGYGEESLKTYHAMLQER-VRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDV 265

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
              V  A+  MY+KCG    A +VF  L+Y+D I+W+T+I G   +G   +A   F  M+
Sbjct: 266 R--VSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRML 323

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
              V PD  T+  ++SAC+  G + +G  +  A +    +V  ++    +++MY +AG +
Sbjct: 324 EEGVAPDRATYTTVLSACARPGGLARGKEIH-ARAAKDGLVSDVRFGNALINMYSKAGSM 382

Query: 365 EEAEAFIREMP 375
           ++A      MP
Sbjct: 383 KDARQVFDRMP 393


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 150/440 (34%), Positives = 256/440 (58%), Gaps = 7/440 (1%)

Query: 28  KALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK--DIFSAHQIFNSVVFPDVVSWTTIISG 85
           K  + HA ++    LH+    + L+ F       D+  A ++F  +  PD     T+I G
Sbjct: 26  KTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRG 85

Query: 86  LSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN 142
            ++     EA+ ++  +    V  +  T   VL+AC+ L + KLG+  H   L+N   ++
Sbjct: 86  YARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSD 145

Query: 143 IILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202
           + + NA++ FY  CGS      +F +   R+VV+W  MI  +  +G  ++A  +  EM K
Sbjct: 146 LFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTK 205

Query: 203 TKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST--RYDLSVSNLVGNAVINMYVKCG 260
                P+E T+V+++ AC+ +  L  GK++HSY     +++++   ++  A+++MY KCG
Sbjct: 206 LDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLVLETALVDMYAKCG 265

Query: 261 DVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALIS 320
            + +A+QVF  +  ++  +W+ +I GLAM+G G  A+ LF  M  + + PDDVTFIAL+ 
Sbjct: 266 SIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLC 325

Query: 321 ACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 380
           ACSH GLVD+GL +F+AM   ++I P+M+HY CVVD+  RA  +++A AFI  MPI+A  
Sbjct: 326 ACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANS 385

Query: 381 SVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEI 440
            +W  LL ACR   + ++ ++I + ++  +  S G + ++SN +AG  +W+   K+R ++
Sbjct: 386 VLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQM 445

Query: 441 RRMGLKKKTGCSWIEVNPSI 460
           +  G++K  GCSWIE+N  I
Sbjct: 446 KNKGIEKTPGCSWIELNGMI 465



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 153/306 (50%), Gaps = 16/306 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           ++YT+   L AC+     +     H  V++ G   D+F+ N+L+ FY        A  +F
Sbjct: 110 DNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVF 169

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSH 124
           +     DVV+W  +I+     G  ++A D+   +    +++P+  T+VS++ AC+ L + 
Sbjct: 170 DESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNL 229

Query: 125 KLGKAIHAHS--LRNLNEN-NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
           + GK +H++S  L     N +++L+ A++D Y +CGS+     +F +M  RNV +W  +I
Sbjct: 230 ERGKFLHSYSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALI 289

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
           GG A  G  ++A+S+F +ME  K   P++ T + +L ACS    +  G  +   +  ++ 
Sbjct: 290 GGLAMHGHGEDAISLFDQMEHDK-LMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQ 348

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDKISWSTVISGLAMNG-------CG 293
           +         V+++  +   V  A+  + NM    + + W+T++      G        G
Sbjct: 349 IEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIG 408

Query: 294 RQALQL 299
           R+ ++L
Sbjct: 409 RRVIEL 414


>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
          Length = 632

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 160/451 (35%), Positives = 256/451 (56%), Gaps = 41/451 (9%)

Query: 32  IHAHVIEYGHLHD-IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           IH   ++ G + + + + N+L+HFY   K +  A ++F+ +   DVVSWTT++ G ++ G
Sbjct: 164 IHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAG 223

Query: 91  FHKEAIDMFCGIDV----KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
              EA  +FC + V    +PNA TLV+ +SA   +     G  +H +        ++ LD
Sbjct: 224 LADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLD 283

Query: 147 NAILDF-------------------------------YIRCGSLASCGYLFVKMPKRNVV 175
           NA++D                                Y +CG L S   LF  MP+RNVV
Sbjct: 284 NALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVV 343

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS- 234
           SW+ MI  Y++    +EAV +F+EM      +P +ATLV+VLSAC+ +  L  G++++  
Sbjct: 344 SWSCMIAAYSQLNQPEEAVWLFREMIAAG-VDPIDATLVSVLSACAQLGCLDLGRWIYEN 402

Query: 235 -YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG 293
             +S +  L+V+  +GNA+I+M+ KCGDVG A ++F+ +A ++ +SW+T+I   A++G  
Sbjct: 403 YIVSNKIGLTVN--LGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQS 460

Query: 294 RQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
            +A++LF  +    + PD +TF+ L+++CSH GLV +G   FK M   Y I P+++HYAC
Sbjct: 461 EEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYAC 520

Query: 354 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVS 413
           ++D+ G+ GLLEEA    R MP+EA+ + WGALLNACR+H N E+   +   LV      
Sbjct: 521 MIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGNVEIGACVADKLVELDPSD 580

Query: 414 VGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444
            G + LMS  +A  ++W+    +R  +R  G
Sbjct: 581 SGIYVLMSQIYASKNKWDQVKMLRMTMRDRG 611


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 149/453 (32%), Positives = 260/453 (57%), Gaps = 5/453 (1%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +TF   LKAC+ A   +  +++H+ V++ G  HD+    SLL  Y     +  AH++F  
Sbjct: 112 FTFPLVLKACTRASNRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEE 171

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLG 127
           +    VV+WT + SG +  G H+EAID+F     + V+P++  +V VLSAC  +     G
Sbjct: 172 IPERSVVTWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSG 231

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           + I  H      + N  +   +++ Y +CG +     +F  M ++++V+W+TMI GYA  
Sbjct: 232 EWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASN 291

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
            F KE +  F +M + +  +P++ ++V  LS+C+S+ AL  G++  S I  R++   +  
Sbjct: 292 SFPKEGIEFFLQMLQ-ENLKPDQFSIVGFLSSCASLGALDLGEWGISLID-RHEFLTNLF 349

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           + NA+I+MY KCG +    +VF  +  KD +  +  ISGLA NG  + +  +F       
Sbjct: 350 MANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLG 409

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           + PD  TF+ L+  C H GL+  GL  F A+S VY +   ++HY C+VD++GRAG+L++A
Sbjct: 410 ISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDA 469

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
              I +MP+     VWGALL+ CR+ ++ ++ + + ++L+  +  + G +  +SN ++ +
Sbjct: 470 YRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVS 529

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            RW++  ++RD + R G+KK  G SWIE+  ++
Sbjct: 530 GRWDEAAEVRDMMNRKGMKKIPGYSWIELEGTV 562



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 186/377 (49%), Gaps = 8/377 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           +++ PSS +     + L + +    H K  ++H  +I +   HD F+ N LL   +  + 
Sbjct: 3   IVTVPSSTSKVQQIKTLISVASTFNHLK--QVHVSLIHHHLHHDTFLVNLLLKRTLFFRQ 60

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
              +  +F+   FP++  + T+I+G        E +D+F  I    +  +  T   VL A
Sbjct: 61  THYSFLLFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKA 120

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C+   + KLG  +H+  ++    +++    ++L  Y   G L     +F ++P+R+VV+W
Sbjct: 121 CTRASNRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTW 180

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
           T +  GY   G  +EA+ +F++M +     P+   +V VLSAC  +  L  G+++  ++ 
Sbjct: 181 TALFSGYTTAGKHREAIDLFKKMVEMG-VRPDSYFIVQVLSACVHVGDLDSGEWIVKHME 239

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
              ++  ++ V   ++N+Y KCG +  A  VF+ +  KD ++WST+I G A N   ++ +
Sbjct: 240 -EMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGI 298

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
           + F  M+   + PD  + +  +S+C+  G +D G      +   +E +  +     ++DM
Sbjct: 299 EFFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDR-HEFLTNLFMANALIDM 357

Query: 358 YGRAGLLEEAEAFIREM 374
           Y + G +       +EM
Sbjct: 358 YAKCGAMARGFEVFKEM 374


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 156/458 (34%), Positives = 271/458 (59%), Gaps = 14/458 (3%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    LKAC  +   +  +  H++V+  G  +D+F+  SL+  Y  + D  SA  +F+S+
Sbjct: 248 TMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSM 307

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMF-------CGIDVKPNANTLVSVLSACSSLVSH 124
               ++SW  +ISG  + G   E+  +F        G D    + TLVS++  CS     
Sbjct: 308 CSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFD----SGTLVSLIRGCSQTSDL 363

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           + G+ +H+  +R   E++++L  AI+D Y +CG++     +F +M K+NV++WT M+ G 
Sbjct: 364 ENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGL 423

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           ++ G+ ++A+ +F +M++ K A  N  TLV+++  C+ + +L+ G+ VH++   R+  + 
Sbjct: 424 SQNGYAEDALKLFCQMQEEKVA-ANSVTLVSLVHCCAHLGSLTKGRTVHAHF-IRHGYAF 481

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFN-MLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
             ++ +A+I+MY KCG +  A ++FN     KD I  +++I G  M+G GR AL ++S M
Sbjct: 482 DAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRM 541

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
           I   + P+  TF++L++ACSH GLV++G  LF +M   +++ PQ +HYAC+VD++ RAG 
Sbjct: 542 IEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAGR 601

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           LEEA+  +++MP +    V  ALL+ CR H+N  M  +I   L++   ++ G + ++SN 
Sbjct: 602 LEEADELVKQMPFQPSTDVLEALLSGCRTHKNTNMGIQIADRLISLDYLNSGIYVMLSNI 661

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           +A A +WE  N IR  +R  G+KK  G S IEV   ++
Sbjct: 662 YAEARKWESVNYIRGLMRMQGMKKIPGYSLIEVGNKVY 699



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 111/375 (29%), Positives = 193/375 (51%), Gaps = 14/375 (3%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYG-HLHDIFIQNSLLHFYVTVK 59
           M SC    N YT   ALKAC+     +  +EI    +  G HLH +++ +S+++F V   
Sbjct: 136 MGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLH-LYVGSSMVNFLVKRG 194

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLS 116
            +  A ++F+ +   DVV W +II G  + G   E+I MF    G  ++P+  T+ ++L 
Sbjct: 195 YLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLK 254

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
           AC      K+G   H++ L     N++ +  +++D Y   G   S   +F  M  R+++S
Sbjct: 255 ACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLIS 314

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           W  MI GY + G   E+ ++F+ + ++     +  TLV+++  CS  S L  G+ +HS I
Sbjct: 315 WNAMISGYVQNGMIPESYALFRRLVQSGSGF-DSGTLVSLIRGCSQTSDLENGRILHSCI 373

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
             R +L    ++  A+++MY KCG +  A  VF  +  K+ I+W+ ++ GL+ NG    A
Sbjct: 374 -IRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDA 432

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL---FKAMSTVYEIVPQMQHYAC 353
           L+LF  M    V  + VT ++L+  C+H G + +G  +   F      ++ V      + 
Sbjct: 433 LKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVIT----SA 488

Query: 354 VVDMYGRAGLLEEAE 368
           ++DMY + G +  AE
Sbjct: 489 LIDMYAKCGKIHSAE 503



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 173/361 (47%), Gaps = 11/361 (3%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           IHA +I+     + F+   L+  Y  +  +  A  +F+    P+      +I+G  +   
Sbjct: 66  IHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFLRNQQ 125

Query: 92  HKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148
           H E   +F      D++ N+ T +  L AC+ L+  ++G  I   ++R     ++ + ++
Sbjct: 126 HMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLYVGSS 185

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
           +++F ++ G LA    +F  MP+++VV W ++IGGY ++G   E++ +F EM       P
Sbjct: 186 MVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGG-LRP 244

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN--LVGNAVINMYVKCGDVGIAI 266
           +  T+ N+L AC        G   HSY+     L + N   V  ++++MY   GD G A 
Sbjct: 245 SPVTMANLLKACGQSGLKKVGMCAHSYVLA---LGMGNDVFVLTSLVDMYSNLGDTGSAA 301

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
            VF+ +  +  ISW+ +ISG   NG   ++  LF  ++ +    D  T ++LI  CS   
Sbjct: 302 LVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTS 361

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 386
            ++ G IL   +    E+   +     +VDMY + G +++A      M  +     W A+
Sbjct: 362 DLENGRILHSCI-IRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMG-KKNVITWTAM 419

Query: 387 L 387
           L
Sbjct: 420 L 420



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 13/171 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    +  C+      K   +HAH I +G+  D  I ++L+  Y     I SA ++F
Sbjct: 447 NSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLF 506

Query: 69  NSVV-FPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSH 124
           N+     DV+   ++I G    G  + A+ ++  +    +KPN  T VS+L+ACS     
Sbjct: 507 NNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLV 566

Query: 125 KLGKAI-----HAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP 170
           + GKA+       H +R  +++   L    +D + R G L     L  +MP
Sbjct: 567 EEGKALFHSMERDHDVRPQHKHYACL----VDLHSRAGRLEEADELVKQMP 613


>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
          Length = 608

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 158/479 (32%), Positives = 276/479 (57%), Gaps = 39/479 (8%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFY---------------VTVKD- 60
           +K+C++    ++  ++H H I  G L DIF+Q +L+ FY               + VKD 
Sbjct: 92  VKSCAILAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDP 151

Query: 61  ---------------IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI--- 102
                          +  A ++F+ +V     SW ++I+  +  G ++EA+ +F  +   
Sbjct: 152 IPMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSE 211

Query: 103 DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSL-RNLNENNIILDNAILDFYIRCGSLAS 161
             +PNA T+ ++ S C+     + GK   A SL    +  N+I+  A+++ Y++C ++  
Sbjct: 212 GARPNAITIATMFSICAKTGDLETGK--WARSLIAEQDLQNMIVHTALMEMYVKCQAIDE 269

Query: 162 CGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221
               F +M +R+VV+W+TMI GYA+ G   E++ +F+ M+ T   +PNE TLV VLSAC+
Sbjct: 270 ARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATS-CKPNEVTLVGVLSACA 328

Query: 222 SISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWS 281
            + +   G  + S++ ++ +L +++ +G+A+I+MY KCG VG A  VFN + +K  I+W+
Sbjct: 329 QLGSDELGGQIGSHVESQ-NLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWN 387

Query: 282 TVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 341
           +++ GLA+NG  + A+ L+  M    V P+++TF+AL++AC+H GLVDQG+  FK M T+
Sbjct: 388 SMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTI 447

Query: 342 YEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDR 401
           + + PQ++H AC+VD+  ++G L EA  FI +M +E    +W  LL+ACR H + E+   
Sbjct: 448 HHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKL 507

Query: 402 IRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
               L+  +  +   + L+SN +A A  W D  +IRD +R   ++K +  SWIE++  +
Sbjct: 508 AASKLLVLEPDNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNVQKLSAYSWIELDGEV 566



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 170/349 (48%), Gaps = 44/349 (12%)

Query: 63  SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNANTLVSVLSA 117
           +A  +F++V  P      T+IS LS+   H+E +D F      G DV P    LV  + +
Sbjct: 37  AARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLV--VKS 94

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP------- 170
           C+ L + + GK +H H++      +I +  A++DFY + G +     +F +MP       
Sbjct: 95  CAILAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPM 154

Query: 171 ------------------------KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
                                   +R   SW +MI  YA  G  +EA+ +F+ M  ++ A
Sbjct: 155 NCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRM-LSEGA 213

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
            PN  T+  + S C+    L  GK+  S I+ + DL  + +V  A++ MYVKC  +  A 
Sbjct: 214 RPNAITIATMFSICAKTGDLETGKWARSLIAEQ-DLQ-NMIVHTALMEMYVKCQAIDEAR 271

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
           + F+ +  +D ++WST+I+G A NG   ++L+LF  M   +  P++VT + ++SAC+  G
Sbjct: 272 REFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLG 331

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHY-ACVVDMYGRAGLLEEAEAFIREM 374
             + G  +   + +  + +P   +  + ++DMY + G +  A +    M
Sbjct: 332 SDELGGQIGSHVES--QNLPLTSYLGSALIDMYTKCGHVGRARSVFNRM 378


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 165/508 (32%), Positives = 265/508 (52%), Gaps = 57/508 (11%)

Query: 9   NHY---------TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK 59
           NHY         T    L AC+     Q   ++H   +  G + D+F+ N+L+  Y    
Sbjct: 224 NHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCS 283

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-------CGIDV-------- 104
            +  A+++F  +   DVVSW  +++G S+ G    A+ +F         +DV        
Sbjct: 284 KMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIA 343

Query: 105 -----------------------KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNL--- 138
                                  +PN  TL S+LS C+S+ +   GK  HA+ ++N+   
Sbjct: 344 GYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNL 403

Query: 139 ----NENNIILDNAILDFYIRCGSLASCGYLF--VKMPKRNVVSWTTMIGGYAERGFCKE 192
                E+++++ N ++D Y +C S      +F  ++   +NVV+WT MIGGYA+ G   +
Sbjct: 404 NWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEAND 463

Query: 193 AVSVFQEMEKTKEA-EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNA 251
           A+ +F ++ K K + +PN  TL   L AC+ +  L  G+ +H+Y     + S    VGN 
Sbjct: 464 ALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNC 523

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD 311
           +I+MY K GD+  A  VF+ +  ++ +SW+++++G  M+G G +AL LF  M       D
Sbjct: 524 LIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVD 583

Query: 312 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFI 371
            +TF+ ++ ACSH G+VDQG+I F  M   + I P  +HYAC+VD+ GRAG L EA   I
Sbjct: 584 GITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELI 643

Query: 372 REMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWE 431
           + M +E    VW ALL+A RIH N E+ +     L      + G++ L+SN +A A RW+
Sbjct: 644 KNMSMEPTAVVWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYANARRWK 703

Query: 432 DTNKIRDEIRRMGLKKKTGCSWIEVNPS 459
           D  +IR  ++  G++K+ GCSWI+   S
Sbjct: 704 DVARIRSLMKHTGIRKRPGCSWIQGKKS 731



 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 224/455 (49%), Gaps = 62/455 (13%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +HYTF   LKAC      +    +HA V   G   ++FI NS++  Y     +  AHQ+F
Sbjct: 126 DHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMF 185

Query: 69  NSVV---FPDVVSWTTIISGLSKCGFHKEAIDM------FCGIDVKPNANTLVSVLSACS 119
           + V+     D+VSW +I++   + G  + A+ +         + ++P+A TLV++L AC+
Sbjct: 186 DEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACA 245

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
           S+ + + GK +H  S+RN   +++ + NA++  Y +C  +     +F  + K++VVSW  
Sbjct: 246 SVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNA 305

Query: 180 M-----------------------------------IGGYAERGFCKEAVSVFQEMEKTK 204
           M                                   I GYA++G   EA+ VF++M+   
Sbjct: 306 MVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQ-LY 364

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY------DLSVSNLVGNAVINMYVK 258
             EPN  TL ++LS C+S+ AL +GK  H+Y+          D     LV N +I+MY K
Sbjct: 365 GLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAK 424

Query: 259 CGDVGIAIQVFNMLAYKDK--ISWSTVISGLAMNGCGRQALQLFSLMIIN--AVFPDDVT 314
           C    +A  +F+ +  KDK  ++W+ +I G A +G    AL+LF+ +     ++ P+  T
Sbjct: 425 CKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFT 484

Query: 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA-CVVDMYGRAGLLEEAEAFIRE 373
               + AC+  G +  G  L  A +   E   ++ +   C++DMY ++G ++ A A    
Sbjct: 485 LSCALMACARLGELRLGRQL-HAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDN 543

Query: 374 MPIEAEWSVWGALLNACRIH-RNDE---MFDRIRQ 404
           M +    S W +L+    +H R +E   +FD++++
Sbjct: 544 MKLRNVVS-WTSLMTGYGMHGRGEEALHLFDQMQK 577



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 158/314 (50%), Gaps = 13/314 (4%)

Query: 79  WTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSL 135
           W  +I    K G   + +  +C +      P+  T   VL AC  + S + G ++HA   
Sbjct: 95  WNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVC 154

Query: 136 RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKR---NVVSWTTMIGGYAERGFCKE 192
            N   +N+ + N+I+  Y RCG+L     +F ++ +R   ++VSW +++  Y + G  + 
Sbjct: 155 ANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRT 214

Query: 193 AVSVFQEMEK--TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGN 250
           A+ +   M    + +  P+  TLVN+L AC+S+ AL  GK VH + S R  L     VGN
Sbjct: 215 ALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGF-SVRNGLVDDVFVGN 273

Query: 251 AVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP 310
           A+++MY KC  +  A +VF  +  KD +SW+ +++G +  G    AL LF +M    +  
Sbjct: 274 ALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKL 333

Query: 311 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL---EEA 367
           D +T+ A+I+  +  G   + L +F+ M  +Y + P +   A ++      G L   ++ 
Sbjct: 334 DVITWSAVIAGYAQKGHGFEALDVFRQMQ-LYGLEPNVVTLASLLSGCASVGALLYGKQT 392

Query: 368 EAFIREMPIEAEWS 381
            A++ +  +   W+
Sbjct: 393 HAYVIKNILNLNWN 406


>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
          Length = 608

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 158/479 (32%), Positives = 276/479 (57%), Gaps = 39/479 (8%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFY---------------VTVKD- 60
           +K+C++    ++  ++H H I  G L DIF+Q +L+ FY               + VKD 
Sbjct: 92  VKSCAILAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDP 151

Query: 61  ---------------IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI--- 102
                          +  A ++F+ +V     SW ++I+  +  G ++EA+ +F  +   
Sbjct: 152 IPMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSE 211

Query: 103 DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSL-RNLNENNIILDNAILDFYIRCGSLAS 161
             +PNA T+ ++ S C+     + GK   A SL    +  N+I+  A+++ Y++C ++  
Sbjct: 212 GARPNAITIATMFSICAKTGDLETGK--WARSLIAEQDLQNMIVHTALMEMYVKCRAIDE 269

Query: 162 CGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221
               F +M +R+VV+W+TMI GYA+ G   E++ +F+ M+ T   +PNE TLV VLSAC+
Sbjct: 270 ARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATS-CKPNEVTLVGVLSACA 328

Query: 222 SISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWS 281
            + +   G  + S++ ++ +L +++ +G+A+I+MY KCG VG A  VFN + +K  I+W+
Sbjct: 329 QLGSDELGGQIGSHVESQ-NLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWN 387

Query: 282 TVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 341
           +++ GLA+NG  + A+ L+  M    V P+++TF+AL++AC+H GLVDQG+  FK M T+
Sbjct: 388 SMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTI 447

Query: 342 YEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDR 401
           + + PQ++H AC+VD+  ++G L EA  FI +M +E    +W  LL+ACR H + E+   
Sbjct: 448 HHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKL 507

Query: 402 IRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
               L+  +  +   + L+SN +A A  W D  +IRD +R   ++K +  SWIE++  +
Sbjct: 508 AASKLLVLEPDNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNVQKLSAYSWIELDGEV 566



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 170/349 (48%), Gaps = 44/349 (12%)

Query: 63  SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNANTLVSVLSA 117
           +A  +F++V  P      T+IS LS+   H+E +D F      G DV P    LV  + +
Sbjct: 37  AARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLV--VKS 94

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP------- 170
           C+ L + + GK +H H++      +I +  A++DFY + G +     +F +MP       
Sbjct: 95  CAILAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPM 154

Query: 171 ------------------------KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
                                   +R   SW +MI  YA  G  +EA+ +F+ M  ++ A
Sbjct: 155 NCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRM-LSEGA 213

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
            PN  T+  + S C+    L  GK+  S I+ + DL  + +V  A++ MYVKC  +  A 
Sbjct: 214 RPNAITIATMFSICAKTGDLETGKWARSLIAEQ-DLQ-NMIVHTALMEMYVKCRAIDEAR 271

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
           + F+ +  +D ++WST+I+G A NG   ++L+LF  M   +  P++VT + ++SAC+  G
Sbjct: 272 REFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLG 331

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHY-ACVVDMYGRAGLLEEAEAFIREM 374
             + G  +   + +  + +P   +  + ++DMY + G +  A +    M
Sbjct: 332 SDELGGQIGSHVES--QNLPLTSYLGSALIDMYTKCGHVGRARSVFNRM 378


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 157/472 (33%), Positives = 277/472 (58%), Gaps = 30/472 (6%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           +   L  C      ++   +HAH+I+  +L  +F++  L+  Y     +  AH +F+ + 
Sbjct: 246 YNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMP 305

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK-------------------------PN 107
             +VVSWT +IS  S+ G+  +A+++F   DVK                         PN
Sbjct: 306 ERNVVSWTAMISAYSQRGYASQALNLFFA-DVKISLTGVYAIDKLKLSNPNRPWVCTEPN 364

Query: 108 ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFV 167
             T  +VL++C+S +   LG+ IH+  ++   E+++ + +++LD Y + G +     +F 
Sbjct: 365 EFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFE 424

Query: 168 KMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 227
            +P+R+VVS T +I GYA+ G  +EA+ +F+ ++  +  + N  T   VL+A S ++AL 
Sbjct: 425 CLPERDVVSCTAIISGYAQLGLDEEALELFRRLQ-GEGMKSNYVTYTGVLTALSGLAALD 483

Query: 228 FGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGL 287
            GK VH+++  R ++    ++ N++I+MY KCG++  + ++F+ +  +  ISW+ ++ G 
Sbjct: 484 LGKQVHNHV-LRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGY 542

Query: 288 AMNGCGRQALQLFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMST-VYEIV 345
           + +G GR+ L+LF+LM     V PD VT +A++S CSHGGL D+GL +F  MS+   E+ 
Sbjct: 543 SKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVE 602

Query: 346 PQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQD 405
           P+M+HY CVVD+ GR+G +EEA  FI++MP E   ++WG+LL ACR+H N ++ +   Q 
Sbjct: 603 PKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHSNVDIGEFAGQQ 662

Query: 406 LVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           L+  +  + G + ++SN +A A RWED + +RD + +  + K+ G S IE++
Sbjct: 663 LLEIEPGNAGNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEPGRSSIELD 714



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 120/216 (55%), Gaps = 3/216 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +TF   L +C+ +       +IH+ +I+  +   +F+ +SLL  Y     I  A  +F
Sbjct: 364 NEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVF 423

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHK 125
             +   DVVS T IISG ++ G  +EA+++F    G  +K N  T   VL+A S L +  
Sbjct: 424 ECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALD 483

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LGK +H H LR+   + ++L N+++D Y +CG+L     +F  M +R V+SW  M+ GY+
Sbjct: 484 LGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYS 543

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221
           + G  +E + +F  M +  + +P+  T++ VLS CS
Sbjct: 544 KHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCS 579


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 152/461 (32%), Positives = 265/461 (57%), Gaps = 36/461 (7%)

Query: 29  ALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF------NSVVF--------- 73
            L++H HV+++G    +F+ + L+  Y     +F A Q F      N V++         
Sbjct: 161 GLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMR 220

Query: 74  ----------------PDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSV 114
                            D +SWT +I+G ++ G  +EAID+F  +   +++ +  T  SV
Sbjct: 221 CSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSV 280

Query: 115 LSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV 174
           L+AC  +++ + GK +HA+ +R   ++NI + +A++D Y +C S+ S   +F KM  +NV
Sbjct: 281 LTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNV 340

Query: 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
           VSWT M+ GY + G+ +EAV +F +M+     EP++ TL +V+S+C+++++L  G   H 
Sbjct: 341 VSWTAMLVGYGQNGYSEEAVKIFCDMQNNG-IEPDDFTLGSVISSCANLASLEEGAQFHC 399

Query: 235 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
                  +S    V NA++ +Y KCG +  + ++F+ ++Y D++SW+ ++SG A  G   
Sbjct: 400 RALVSGLISFIT-VSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKAN 458

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
           + L+LF  M+ +   PD VTFI ++SACS  GLV +G  +F++M   + I+P   HY C+
Sbjct: 459 ETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCM 518

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414
           +D++ RAG LEEA  FI +MP   +   W +LL++CR HRN E+     + L+  +  + 
Sbjct: 519 IDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNT 578

Query: 415 GTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
            ++ L+S+ +A   +WE+   +R  +R  GL+K+ GCSWI+
Sbjct: 579 ASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIK 619



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 115/447 (25%), Positives = 204/447 (45%), Gaps = 78/447 (17%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           NHY        C L    +   +IH H+I+     +IF+ N+L+  Y     I  A ++F
Sbjct: 16  NHY--------CELLKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVF 67

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKP--NANTLVSV------------ 114
           + +   ++ SW T++S  SK     E   +F  +  +   + N+L+S             
Sbjct: 68  DQMPQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVK 127

Query: 115 -----------------LSACSSLVSHK----LGKAIHAHSLRNLNENNIILDNAILDFY 153
                            LS    L S +    LG  +H H ++   ++ + + + ++D Y
Sbjct: 128 AYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMY 187

Query: 154 IRCGSLASCGYLFVKMPKRNVV-------------------------------SWTTMIG 182
            + G +      F +MP++NVV                               SWT MI 
Sbjct: 188 SKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIA 247

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
           G+ + G  +EA+ +F+EM + +  E ++ T  +VL+AC  + AL  GK VH+YI  R D 
Sbjct: 248 GFTQNGLDREAIDLFREM-RLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYI-IRTDY 305

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
             +  VG+A+++MY KC  +  A  VF  +  K+ +SW+ ++ G   NG   +A+++F  
Sbjct: 306 QDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCD 365

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
           M  N + PDD T  ++IS+C++   +++G   F   + V  ++  +     +V +YG+ G
Sbjct: 366 MQNNGIEPDDFTLGSVISSCANLASLEEG-AQFHCRALVSGLISFITVSNALVTLYGKCG 424

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNA 389
            +E++     EM    E S W AL++ 
Sbjct: 425 SIEDSHRLFSEMSYVDEVS-WTALVSG 450



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 149/281 (53%), Gaps = 5/281 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YTF   L AC      Q+  ++HA++I   +  +IF+ ++L+  Y   K I SA  +F
Sbjct: 273 DQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVF 332

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   +VVSWT ++ G  + G+ +EA+ +FC +    ++P+  TL SV+S+C++L S +
Sbjct: 333 RKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLE 392

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G   H  +L +   + I + NA++  Y +CGS+     LF +M   + VSWT ++ GYA
Sbjct: 393 EGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYA 452

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G   E + +F+ M      +P++ T + VLSACS    +  G  +   +   + +   
Sbjct: 453 QFGKANETLRLFESM-LAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPI 511

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DKISWSTVIS 285
                 +I+++ + G +  A +  N + +  D I W++++S
Sbjct: 512 EDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLS 552


>gi|326518042|dbj|BAK07273.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 527

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 162/485 (33%), Positives = 272/485 (56%), Gaps = 40/485 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +T+   L+A        +  + HA  ++ G   D +  +SL+  Y  +  + +A ++F
Sbjct: 45  DSFTYPFVLRAIGALQISVEGRKAHAATLKTGFRWDAYTASSLMDMYTMLGRLEAARKVF 104

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           + +    VV W  ++    +CG + EA+ +   ++   + P+  TL++ L+ACS      
Sbjct: 105 DEMPQRAVVVWNMMLRCYVRCGRNTEAVALAEEMERGRLTPDRVTLLTALTACSRAGDLS 164

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG+ IHA+ +  +   ++ + NA+LD Y++ G L     LF KMP RNVVSWTT++ GYA
Sbjct: 165 LGRKIHAY-MDGVTGFSLPVANALLDMYVKNGCLEEAVNLFEKMPSRNVVSWTTLVSGYA 223

Query: 186 -------------------------------ERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
                                          + G   EA+S+F++M+   + EP+  T+V
Sbjct: 224 FAGQVDKARLLFHQCTEKDLIMWTAMINAYVQHGCFIEALSLFRDMQ-MHQIEPDRFTVV 282

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
            +L+ C+++ AL  G+ +H +   R ++ +  ++G A+I+MY KCG V  +++VF  +  
Sbjct: 283 TLLTCCANLGALDQGQLIHQFAEGR-NMKLDAVLGTALIDMYAKCGHVEKSVEVFERMEG 341

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           +D  +W+ +I GLA NG   +AL+LF  M  +   PD VTFI ++SAC HGGLVD+G   
Sbjct: 342 RDTKAWTAIICGLATNGQAGRALELFEDMERSEAKPDSVTFIGVLSACCHGGLVDEGRKQ 401

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAE-WSVWGALLNACRIH 393
           F+AM  VY I P+++HY+C+V++ GRAG L+EAE  I+ +PI  +   ++GAL+ AC+  
Sbjct: 402 FRAMKEVYRIRPRVEHYSCLVNLLGRAGQLDEAEKLIKSIPINKDAMPLFGALITACKAQ 461

Query: 394 RNDEMFDRIRQDLVNKKGVSVGTF-ALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCS 452
            N +M +R+ +  + K+G  +     LMSN +A A RWED  ++R ++    +KK  GCS
Sbjct: 462 GNVKMSERLTKR-IGKQGYQIPDVNLLMSNVYATASRWEDVVRVRSKMAHPSVKKNAGCS 520

Query: 453 WIEVN 457
            IEV 
Sbjct: 521 LIEVK 525


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 154/436 (35%), Positives = 258/436 (59%), Gaps = 12/436 (2%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDI-FSAHQIFNSVVFPDVVSWTTIISGLSKC 89
           E+HA+ I+     D  + N+L+  Y+  + I +SAH +F+ +   D +SWTTII+  ++ 
Sbjct: 387 EVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAH-VFDRMRIKDHISWTTIITCYAQS 445

Query: 90  GFHKEAIDMFC-----GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
             H EA+++F      GI V P    + S+L ACS L +  L K +H +++RN    +++
Sbjct: 446 SRHIEALEIFREAQKEGIKVDPM--MIGSILEACSGLETILLAKQLHCYAIRN-GLLDLV 502

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           + N I+D Y  CG +     +F  + ++++V+WT+MI  YA  G   EA+ +F EM+ T 
Sbjct: 503 VKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQST- 561

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
           + +P+   LV++L A   +S+L+ GK VH ++  R +  +   + +++++MY  CG +  
Sbjct: 562 DVQPDSVALVSILGAIGGLSSLAKGKEVHGFL-IRRNFHMEEAIVSSLVDMYSGCGSLSG 620

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
           A++VFN +  KD + W+ +I+   M+G G+QA+ LF  M+   V PD V+F+AL+ ACSH
Sbjct: 621 ALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSH 680

Query: 325 GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 384
             LV++G      M + Y + P  +HYACVVD+ GR+G  EEA  FI+ MP++ +  VW 
Sbjct: 681 SKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWC 740

Query: 385 ALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444
           +LL ACR+H+N E+       L+  +  + G + L+SN FA   +W +  ++R  I   G
Sbjct: 741 SLLGACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERG 800

Query: 445 LKKKTGCSWIEVNPSI 460
           L+K   CSWIE+  ++
Sbjct: 801 LRKDPACSWIEIGNNV 816



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 213/422 (50%), Gaps = 29/422 (6%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQ-NSLLHFYVTVKDIFSAH 65
           S N YT    L+ C+         E+HA +++ G   ++ IQ N+LL  Y     + SA 
Sbjct: 263 SMNSYTTVGVLQVCTELAQLNLGRELHAALLKSG--SEVNIQCNALLVMYTKCGRVDSAL 320

Query: 66  QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLV 122
           ++F  +   D +SW +++S   + G + EAI+    +     +P+   +VS+ SA   L 
Sbjct: 321 RVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLG 380

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
               GK +HA++++   +++  + N ++D Y++C  +    ++F +M  ++ +SWTT+I 
Sbjct: 381 WLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIIT 440

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
            YA+     EA+ +F+E +K +  + +   + ++L ACS +  +   K +H Y + R  L
Sbjct: 441 CYAQSSRHIEALEIFREAQK-EGIKVDPMMIGSILEACSGLETILLAKQLHCY-AIRNGL 498

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
            +  +V N +I++Y +CG+V  ++++F  +  KD ++W+++I+  A +G   +AL LF+ 
Sbjct: 499 -LDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAE 557

Query: 303 MIINAVFPDDVTFIALISACSHGGLVD-------QGLILFKAMSTVYEIVPQMQHYACVV 355
           M    V PD V  ++++ A   GGL          G ++ +       IV  +      V
Sbjct: 558 MQSTDVQPDSVALVSILGAI--GGLSSLAKGKEVHGFLIRRNFHMEEAIVSSL------V 609

Query: 356 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQDLVNKKG 411
           DMY   G L  A      +  + +  +W A++NA  +H +     ++F R+ Q  V    
Sbjct: 610 DMYSGCGSLSGALKVFNAVKCK-DMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDH 668

Query: 412 VS 413
           VS
Sbjct: 669 VS 670



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 186/397 (46%), Gaps = 17/397 (4%)

Query: 28  KALEIHAHVIEYGHLH--DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISG 85
           + +++HAH +  G L   D F+   LL  Y     +  A  +F+ +    V SW  +I  
Sbjct: 76  QGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGA 135

Query: 86  LSKCGFHKEAIDMFCGI------DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLN 139
               G   EA+ ++  +       V P+  TL SVL A       + G  +H  ++++  
Sbjct: 136 YLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGL 195

Query: 140 ENNIILDNAILDFYIRCGSLASCGYLFVKM-PKRNVVSWTTMIGGYAERGFCKEAVSVFQ 198
           + +  + NA++  Y +CG L S   +F  M   R+V SW +MI G  + G   +A+ +F+
Sbjct: 196 DRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFR 255

Query: 199 EMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVK 258
            M++      N  T V VL  C+ ++ L+ G+ +H+ +      S  N+  NA++ MY K
Sbjct: 256 GMQRAV-LSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSG--SEVNIQCNALLVMYTK 312

Query: 259 CGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIAL 318
           CG V  A++VF  +  KD ISW++++S    NG   +A++  S M+     PD    ++L
Sbjct: 313 CGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSL 372

Query: 319 ISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEA 378
            SA  H G +  G  +  A +    +    Q    ++DMY +   +E +      M I+ 
Sbjct: 373 SSAVGHLGWLLNGKEV-HAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKD 431

Query: 379 EWSVWGALLNA-CRIHRNDEMFDRIRQDLVNKKGVSV 414
             S W  ++    +  R+ E  +  R+    K+G+ V
Sbjct: 432 HIS-WTTIITCYAQSSRHIEALEIFRE--AQKEGIKV 465



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 15/165 (9%)

Query: 28  KALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS 87
           K  E+H  +I      +  I +SL+  Y     +  A ++FN+V   D+V WT +I+   
Sbjct: 585 KGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATG 644

Query: 88  KCGFHKEAIDMF---CGIDVKPNANTLVSVLSAC--SSLVSHK---LGKAIHAHSLRNLN 139
             G  K+AID+F       V P+  + +++L AC  S LV+     L   +  + L    
Sbjct: 645 MHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQ 704

Query: 140 ENNIILDNAILDFYIRCGSLASCGYLFVK-MP-KRNVVSWTTMIG 182
           E+       ++D   R G      Y F+K MP K   V W +++G
Sbjct: 705 EHYA----CVVDLLGRSGQTEE-AYEFIKSMPLKPKSVVWCSLLG 744


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 156/455 (34%), Positives = 262/455 (57%), Gaps = 8/455 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS- 70
           TF    KA  +     KA E+  + +E G   +  +  +L+        +  A  IFNS 
Sbjct: 274 TFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSH 333

Query: 71  -VVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKL 126
            +       W  +ISG  + GF+++A+++F   C  D+  +  T  SV +A ++L    L
Sbjct: 334 FITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSL 393

Query: 127 GKAIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           GK +HA ++++ L  N + + NA+ + Y +CGSL     +F +M  R+++SWT+++  Y+
Sbjct: 394 GKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYS 453

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +     +A+ +F  M + +   PN+ T  +VL +C+++  L +G+ VH  I  +  L + 
Sbjct: 454 QCSEWDKAIEIFSNM-RAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGII-CKVGLDMD 511

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             + +A+++MY KCG +G A +VFN ++  D +SW+ +I+G A +G    ALQLF  M+ 
Sbjct: 512 KCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQ 571

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             V P+ VTF+ ++ ACSHGGLV++GL  FK M   Y +VP+M+HYAC+VD+  R G L 
Sbjct: 572 LGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLN 631

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           +A  FI  MP+E    VW  LL ACR+H N E+ +   Q +++ K  +  T+ L+SNT+ 
Sbjct: 632 DAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYI 691

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            +  ++D   +R  ++  G+KK+ GCSWI VN ++
Sbjct: 692 ESGSYKDGLSLRHVMKEQGVKKEPGCSWISVNGTL 726



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 112/440 (25%), Positives = 212/440 (48%), Gaps = 31/440 (7%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           +HA ++  G     F+  +LL+ Y  +++I  ++++FN++   +VVSW  +I+G +    
Sbjct: 193 VHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDL 252

Query: 92  HKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148
           + +A D+F    G  V P+A T + V  A   L      K +  ++L    ++N ++  A
Sbjct: 253 YLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTA 312

Query: 149 ILDFYIRCGSLASCGYLFVK--MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           ++D   +CGSL     +F    +  R    W  MI GY   GF ++A+ +F +M +  + 
Sbjct: 313 LIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQN-DI 371

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIA 265
             +  T  +V +A +++  LS GK VH+  + +  L V+ + + NAV N Y KCG +   
Sbjct: 372 YLDHYTYCSVFNAIAALKCLSLGKKVHAR-AIKSGLEVNYVSISNAVANAYAKCGSLEDV 430

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
            +VFN +  +D ISW+++++  +      +A+++FS M    + P+  TF +++ +C++ 
Sbjct: 431 RKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANL 490

Query: 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 385
            L++ G  +   +  V   + +    A +VDMY + G L +A+     +   A+   W A
Sbjct: 491 CLLEYGQQVHGIICKVGLDMDKCIESA-LVDMYAKCGCLGDAKKVFNRIS-NADTVSWTA 548

Query: 386 LLNACRIHR--ND--EMFDRIRQDLVNKKGVS-----------------VGTFALMSNTF 424
           ++     H   +D  ++F R+ Q  V    V+                 +  F LM  T+
Sbjct: 549 IIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTY 608

Query: 425 AGADRWEDTNKIRDEIRRMG 444
                 E    I D + R+G
Sbjct: 609 GLVPEMEHYACIVDLLSRVG 628



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 177/381 (46%), Gaps = 12/381 (3%)

Query: 17  LKACSLAHPHQKALEIHAHVIE--YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 74
           L+ C  A   ++A  +H  +++  + + H + + N + H Y    DI +A ++F+ +   
Sbjct: 75  LRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQR 134

Query: 75  DVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIH 131
           +  SWT +I+GL++ G   +  + FC +  +   P+      +L  C  L S +LG  +H
Sbjct: 135 NTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVH 194

Query: 132 AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
           A  +     ++  +  A+L+ Y +   +     +F  M + NVVSW  MI G+       
Sbjct: 195 AQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYL 254

Query: 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNA 251
           +A  +F  M   +   P+  T + V  A   +  ++  K V  Y +    +  + LVG A
Sbjct: 255 DAFDLFLRM-MGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGY-ALELGVDSNTLVGTA 312

Query: 252 VINMYVKCGDVGIAIQVFN--MLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
           +I+M  KCG +  A  +FN   +  +    W+ +ISG   +G   +AL+LF+ M  N ++
Sbjct: 313 LIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIY 372

Query: 310 PDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            D  T+ ++ +A +    +  G  +  +A+ +  E V  +     V + Y + G LE+  
Sbjct: 373 LDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLE-VNYVSISNAVANAYAKCGSLEDVR 431

Query: 369 AFIREMPIEAEWSVWGALLNA 389
                M  + +   W +L+ A
Sbjct: 432 KVFNRME-DRDLISWTSLVTA 451



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 103/213 (48%), Gaps = 4/213 (1%)

Query: 111 LVSVLSACSSLVSHKLGKAIHAHSLRNL--NENNIILDNAILDFYIRCGSLASCGYLFVK 168
           LV +L  C      K  K +H   L++   N ++++L N +   Y +C  + +   LF +
Sbjct: 71  LVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQ 130

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           M +RN  SWT +I G AE G   +    F EM+ ++   P++     +L  C  + ++  
Sbjct: 131 MSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQ-SQGIFPDQFAYSGILQICIGLDSIEL 189

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
           G  VH+ I  R   +    V  A++NMY K  ++  + +VFN +   + +SW+ +I+G  
Sbjct: 190 GNMVHAQIVIR-GFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFT 248

Query: 289 MNGCGRQALQLFSLMIINAVFPDDVTFIALISA 321
            N     A  LF  M+   V PD  TFI +  A
Sbjct: 249 SNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKA 281



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 1/111 (0%)

Query: 213 LVNVLSACSSISALSFGKYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 271
           LV++L  C     L   K VH ++  +++    S ++ N V + Y KC D+  A ++F+ 
Sbjct: 71  LVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQ 130

Query: 272 LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
           ++ ++  SW+ +I+GLA NG      + F  M    +FPD   +  ++  C
Sbjct: 131 MSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQIC 181


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 169/476 (35%), Positives = 260/476 (54%), Gaps = 48/476 (10%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYV--TVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           +IHAH I+ G +H       LL F    T ++I  A + F+ +  P+  SW TII  L+ 
Sbjct: 33  QIHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHHPNCFSWNTIIRALAD 92

Query: 89  CG----FHKEAID-------MFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIH------ 131
                 FH  +++       M     V+PN  T   VL AC+ L   + GK +H      
Sbjct: 93  SDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIEEGKQLHGFVVKL 152

Query: 132 ------------------------AHSL--RNLNENNIILDNAILDFYIRCGSLASCGYL 165
                                   AH L  +   E N++L N ++D Y+R G L +   L
Sbjct: 153 GLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYVRMGDLRASREL 212

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
           F  MP ++VVSW  MI G A+ G  KEA+ +F +M+   +  PN  TLV+VL A S + A
Sbjct: 213 FDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQ-LGDVPPNYVTLVSVLPAVSRLGA 271

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA-YKDKISWSTVI 284
           +  GK+VH + + + ++ + +++G+A+I+MY KCG +  A+QVF  +   K+ I+WS +I
Sbjct: 272 IELGKWVHLF-AEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAII 330

Query: 285 SGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 344
            GLAM+G  R AL  F  M    V P DV +I ++SACSH GLV++G  ++  M  +  +
Sbjct: 331 GGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIVGL 390

Query: 345 VPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQ 404
           +P+++HY C+VD+ GRAG LEEAE  I  MP++ +  +  ALL AC++H N EM +RI +
Sbjct: 391 LPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALLGACKMHGNIEMGERIAK 450

Query: 405 DLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            L+       G++  +SN FA    WE   K+R +++ + ++K  GCSWIE++  I
Sbjct: 451 ILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRKDPGCSWIELDGVI 506



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 176/370 (47%), Gaps = 71/370 (19%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHF-------------- 54
           N +TF   LKAC+     ++  ++H  V++ G + D F++++L+                
Sbjct: 122 NKFTFPCVLKACAKLARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLF 181

Query: 55  ------------------YVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAI 96
                             YV + D+ ++ ++F+S+    VVSW  +ISG ++ G  KEAI
Sbjct: 182 YQTRLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAI 241

Query: 97  DMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFY 153
           +MF  +   DV PN  TLVSVL A S L + +LGK +H  + +N  E + +L +A++D Y
Sbjct: 242 EMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMY 301

Query: 154 IRCGSLASCGYLFVKMP-KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEAT 212
            +CGS+     +F  +  K+N ++W+ +IGG A  G  ++A+  F  M++     P++  
Sbjct: 302 SKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAG-VTPSDVV 360

Query: 213 LVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 272
            + VLSACS    +  G+ ++ ++                +N+      VG+  ++ +  
Sbjct: 361 YIGVLSACSHAGLVEEGRSIYYHM----------------VNI------VGLLPRIEH-- 396

Query: 273 AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL 332
                  +  ++  L   GC  +A QL   M    V PDDV   AL+ AC   G ++ G 
Sbjct: 397 -------YGCMVDLLGRAGCLEEAEQLILNM---PVKPDDVILKALLGACKMHGNIEMGE 446

Query: 333 ILFKAMSTVY 342
            + K +   Y
Sbjct: 447 RIAKILMGWY 456


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  291 bits (746), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 156/455 (34%), Positives = 262/455 (57%), Gaps = 8/455 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS- 70
           TF    KA  +     KA E+  + +E G   +  +  +L+        +  A  IFNS 
Sbjct: 274 TFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSH 333

Query: 71  -VVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKL 126
            +       W  +ISG  + GF+++A+++F   C  D+  +  T  SV +A ++L    L
Sbjct: 334 FITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSL 393

Query: 127 GKAIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           GK +HA ++++ L  N + + NA+ + Y +CGSL     +F +M  R+++SWT+++  Y+
Sbjct: 394 GKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYS 453

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +     +A+ +F  M + +   PN+ T  +VL +C+++  L +G+ VH  I  +  L + 
Sbjct: 454 QCSEWDKAIEIFSNM-RAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGII-CKVGLDMD 511

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             + +A+++MY KCG +G A +VFN ++  D +SW+ +I+G A +G    ALQLF  M+ 
Sbjct: 512 KCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQ 571

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             V P+ VTF+ ++ ACSHGGLV++GL  FK M   Y +VP+M+HYAC+VD+  R G L 
Sbjct: 572 LGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLN 631

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           +A  FI  MP+E    VW  LL ACR+H N E+ +   Q +++ K  +  T+ L+SNT+ 
Sbjct: 632 DAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYI 691

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            +  ++D   +R  ++  G+KK+ GCSWI VN ++
Sbjct: 692 ESGSYKDGLSLRHLMKEQGVKKEPGCSWISVNGTL 726



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 112/440 (25%), Positives = 212/440 (48%), Gaps = 31/440 (7%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           +HA ++  G     F+  +LL+ Y  +++I  ++++FN++   +VVSW  +I+G +    
Sbjct: 193 VHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDL 252

Query: 92  HKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148
           + +A D+F    G  V P+A T + V  A   L      K +  ++L    ++N ++  A
Sbjct: 253 YLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTA 312

Query: 149 ILDFYIRCGSLASCGYLFVK--MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           ++D   +CGSL     +F    +  R    W  MI GY   GF ++A+ +F +M +  + 
Sbjct: 313 LIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQN-DI 371

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIA 265
             +  T  +V +A +++  LS GK VH+  + +  L V+ + + NAV N Y KCG +   
Sbjct: 372 YLDHYTYCSVFNAIAALKCLSLGKKVHAR-AIKSGLEVNYVSISNAVANAYAKCGSLEDV 430

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
            +VFN +  +D ISW+++++  +      +A+++FS M    + P+  TF +++ +C++ 
Sbjct: 431 RKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANL 490

Query: 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 385
            L++ G  +   +  V   + +    A +VDMY + G L +A+     +   A+   W A
Sbjct: 491 CLLEYGQQVHGIICKVGLDMDKCIESA-LVDMYAKCGCLGDAKKVFNRIS-NADTVSWTA 548

Query: 386 LLNACRIHR--ND--EMFDRIRQDLVNKKGVS-----------------VGTFALMSNTF 424
           ++     H   +D  ++F R+ Q  V    V+                 +  F LM  T+
Sbjct: 549 IIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTY 608

Query: 425 AGADRWEDTNKIRDEIRRMG 444
                 E    I D + R+G
Sbjct: 609 GLVPEMEHYACIVDLLSRVG 628



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 177/381 (46%), Gaps = 12/381 (3%)

Query: 17  LKACSLAHPHQKALEIHAHVIE--YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 74
           L+ C  A   ++A  +H  +++  + + H + + N + H Y    DI +A ++F+ +   
Sbjct: 75  LRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQR 134

Query: 75  DVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIH 131
           +  SWT +I+GL++ G   +  + FC +  +   P+      +L  C  L S +LG  +H
Sbjct: 135 NTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVH 194

Query: 132 AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
           A  +     ++  +  A+L+ Y +   +     +F  M + NVVSW  MI G+       
Sbjct: 195 AQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYL 254

Query: 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNA 251
           +A  +F  M   +   P+  T + V  A   +  ++  K V  Y +    +  + LVG A
Sbjct: 255 DAFDLFLRM-MGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGY-ALELGVDSNTLVGTA 312

Query: 252 VINMYVKCGDVGIAIQVFN--MLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
           +I+M  KCG +  A  +FN   +  +    W+ +ISG   +G   +AL+LF+ M  N ++
Sbjct: 313 LIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIY 372

Query: 310 PDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            D  T+ ++ +A +    +  G  +  +A+ +  E V  +     V + Y + G LE+  
Sbjct: 373 LDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLE-VNYVSISNAVANAYAKCGSLEDVR 431

Query: 369 AFIREMPIEAEWSVWGALLNA 389
                M  + +   W +L+ A
Sbjct: 432 KVFNRME-DRDLISWTSLVTA 451



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 103/213 (48%), Gaps = 4/213 (1%)

Query: 111 LVSVLSACSSLVSHKLGKAIHAHSLRNL--NENNIILDNAILDFYIRCGSLASCGYLFVK 168
           LV +L  C      K  K +H   L++   N ++++L N +   Y +C  + +   LF +
Sbjct: 71  LVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQ 130

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           M +RN  SWT +I G AE G   +    F EM+ ++   P++     +L  C  + ++  
Sbjct: 131 MSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQ-SQGIFPDQFAYSGILQICIGLDSIEL 189

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
           G  VH+ I  R   +    V  A++NMY K  ++  + +VFN +   + +SW+ +I+G  
Sbjct: 190 GNMVHAQIVIR-GFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFT 248

Query: 289 MNGCGRQALQLFSLMIINAVFPDDVTFIALISA 321
            N     A  LF  M+   V PD  TFI +  A
Sbjct: 249 SNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKA 281



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 1/111 (0%)

Query: 213 LVNVLSACSSISALSFGKYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 271
           LV++L  C     L   K VH ++  +++    S ++ N V + Y KC D+  A ++F+ 
Sbjct: 71  LVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQ 130

Query: 272 LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
           ++ ++  SW+ +I+GLA NG      + F  M    +FPD   +  ++  C
Sbjct: 131 MSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQIC 181


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 162/477 (33%), Positives = 272/477 (57%), Gaps = 28/477 (5%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           P+   H  F   L+ C   H +Q    I+A +I   H  D F+   LL     +  I  A
Sbjct: 29  PNRRRH--FISLLQNCK--HNNQIP-PIYAKIIRNHHHQDPFVVFELLRVCSNLNSIGYA 83

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSL 121
            +IF+    P+V  +T +I GL    ++ + I ++  +    + P++  + SVL AC   
Sbjct: 84  SKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCH 143

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS----- 176
           ++ K G+ +H+  L+    +N  +   +++ Y +CG+      +F +MP+R+VV+     
Sbjct: 144 LALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMI 203

Query: 177 -------------WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI 223
                        WT MI G    G    A+ VF+ M++ ++  PNE T+V VLSACS +
Sbjct: 204 NYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQR-EDVMPNEVTIVCVLSACSEL 262

Query: 224 SALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTV 283
            AL  G++V SY+  ++ + +++ VG A+INMY +CGD+  A +VF  +  K+ I+++++
Sbjct: 263 GALQLGRWVRSYMD-KHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSM 321

Query: 284 ISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 343
           I G A++G   +A++LF  +I     P  VTF+ +++ACSHGGL + G  +F +M+  Y 
Sbjct: 322 IMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYG 381

Query: 344 IVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIR 403
           I PQ++HY C+VD+ GR G LEEA +FIR M +  +  + GALL+AC+IH N E+ +R+ 
Sbjct: 382 IEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVA 441

Query: 404 QDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           + LV  K    GT+ L+SN ++ + +W++  ++R  +R  G++K+ GCS IEVN  I
Sbjct: 442 KSLVACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEPGCSSIEVNNEI 498


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 159/492 (32%), Positives = 270/492 (54%), Gaps = 42/492 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N Y+F  AL AC+         ++HA V +  +  D+++ ++L+  Y     +  A ++F
Sbjct: 146 NEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVF 205

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           + ++  ++V+W ++I+   + G   EA+++F  +    ++P+  TL SV+SAC+SL + K
Sbjct: 206 SGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALK 265

Query: 126 LGKAIHAHSLR-NLNENNIILDNAILDFYIRC---------------------------- 156
            G  IHA  ++ N   ++++L NA++D Y +C                            
Sbjct: 266 EGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGY 325

Query: 157 ---GSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATL 213
               S+ +  ++F KM +RNVVSW  +I GY + G  +EA+ +F+ + K +   P   T 
Sbjct: 326 ARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFR-LLKRESIWPTHYTF 384

Query: 214 VNVLSACSSISALSFGKYVHSYI-----STRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
            N+LSAC++++ L  G+  H+++       +        VGN++I+MY+KCG +    +V
Sbjct: 385 GNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRV 444

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F  +  +D +SW+ +I G A NG G +ALQ+F  M++    PD VT I ++ ACSH GLV
Sbjct: 445 FEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLV 504

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
           ++G   F +M   + ++P   HY C+VD+ GRAG L EA+  I  MP+  +  VWG+LL 
Sbjct: 505 EEGRHYFFSMEE-HGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLA 563

Query: 389 ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
           AC++H N EM     + L+     + G + L+SN +A   RW D  ++R  +R+ G+ K+
Sbjct: 564 ACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQ 623

Query: 449 TGCSWIEVNPSI 460
            GCSWIEV   +
Sbjct: 624 PGCSWIEVESRV 635



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 116/452 (25%), Positives = 207/452 (45%), Gaps = 78/452 (17%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N   F + L +C  +   +    +HA ++      +IFIQN L+  Y     +  A ++F
Sbjct: 14  NSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLF 73

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI-------------------------- 102
           + +   +  +W ++IS L+K GF  EA  +F  +                          
Sbjct: 74  DRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLE 133

Query: 103 --------DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
                   D   N  +  S LSAC+ L+   +G  +HA   ++    ++ + +A++D Y 
Sbjct: 134 YFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYS 193

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           +CGS+A    +F  M +RN+V+W ++I  Y + G   EA+ VF  M  +   EP+E TL 
Sbjct: 194 KCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSG-LEPDEVTLA 252

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA- 273
           +V+SAC+S+ AL  G  +H+ +          ++GNA+++MY KC  V  A +VF+ ++ 
Sbjct: 253 SVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSI 312

Query: 274 ------------------------------YKDKISWSTVISGLAMNGCGRQALQLFSLM 303
                                          ++ +SW+ +I+G   NG   +AL+LF L+
Sbjct: 313 RNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLL 372

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA--------CVV 355
              +++P   TF  L+SAC++  L D  L+  +A + V +   + Q  A         ++
Sbjct: 373 KRESIWPTHYTFGNLLSACAN--LADL-LLGRQAHTHVLKQGFEFQSGAESDIFVGNSLI 429

Query: 356 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           DMY + G +E+      +M  E +   W A++
Sbjct: 430 DMYMKCGSIEDGSRVFEKMK-ERDCVSWNAII 460



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 36/333 (10%)

Query: 106 PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYL 165
           PN++    +L +C    S +  + +HA  L       I + N ++D Y +C  L     L
Sbjct: 13  PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE------------------ 207
           F +MP+RN  +W ++I    + GF  EA  +F  M +  +                    
Sbjct: 73  FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESL 132

Query: 208 ------------PNEATLVNVLSACSSISALSFGKYVHSYIS-TRYDLSVSNLVGNAVIN 254
                        NE +  + LSAC+ +  L+ G  VH+ +S +RY   V   +G+A+I+
Sbjct: 133 EYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDV--YMGSALID 190

Query: 255 MYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVT 314
           MY KCG V  A +VF+ +  ++ ++W+++I+    NG   +AL++F  M+ + + PD+VT
Sbjct: 191 MYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVT 250

Query: 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
             +++SAC+    + +GL +   +    +    +     +VDMY +   + EA      M
Sbjct: 251 LASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRM 310

Query: 375 PIE---AEWSVWGALLNACRIHRNDEMFDRIRQ 404
            I    +E S+      A  +     MF ++ Q
Sbjct: 311 SIRNVVSETSMVSGYARAASVKAARFMFSKMTQ 343


>gi|125603908|gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japonica Group]
          Length = 567

 Score =  291 bits (745), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 169/487 (34%), Positives = 273/487 (56%), Gaps = 43/487 (8%)

Query: 1   MLSCPSSYNHYTFTQALKACS--LAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV 58
           +L C    + +T    L +     A P   A ++HA  +  G L D+F+ N+LL  Y  +
Sbjct: 85  LLRCGLVPDRFTLPPLLGSAGKLPAFPRTGA-QVHAQAVRRGFLADVFVVNALLAMYGAL 143

Query: 59  KDIFSAHQIFNSVV-FPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN-----TLV 112
           +D  S  ++F S     DVVSW T+I G  KCG  + A  +F   D  P  N     T+V
Sbjct: 144 RDAASMREVFGSCAGVADVVSWNTVIGGYVKCGEMESAKRVF---DEMPRRNGVSWSTMV 200

Query: 113 SVLSACSSL-VSHKLGKAIHA-----------------HSLRNLNEN--------NIILD 146
              +A   L V+ ++   + A                 H L  L           N++  
Sbjct: 201 GGYAAAGELDVAREMFDRMPAIGRNVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSW 260

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           NA+L  Y     +     LF  MP+++VVSWT MI GYA+ G  ++ + +F+ M+     
Sbjct: 261 NAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNV 320

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL--VGNAVINMYVKCGDVGI 264
           +PNE T+V+VLSAC++++AL  G++VH++I  ++ + ++N   +G A+I+MY KCG   I
Sbjct: 321 QPNEVTMVSVLSACANLTALEEGRWVHAFID-KHKMVLNNEYNLGAALIDMYAKCGRTDI 379

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
           A+++FN L  K+  +W+ +I+ LAMNG  R ++  F  M      P+D+TF+ +++ACSH
Sbjct: 380 AVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLTACSH 439

Query: 325 GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 384
           GGLVD+G   F++M++   + P+++HY C+VDM GRAGLLEEAE  IR MP+  +  V+G
Sbjct: 440 GGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMPMAPDVMVFG 499

Query: 385 ALLNACRIHRNDEMFDRIRQDL--VNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442
           ALL ACR+H+  ++ +R++ ++  +N      G   L+S+ +A A +W D  + R  ++R
Sbjct: 500 ALLGACRMHKRFDVAERVQSEIHSLNLNAQQSGCHVLISDIYAAAGKWFDVLEARQVVQR 559

Query: 443 MGLKKKT 449
            G++K T
Sbjct: 560 SGIRKWT 566


>gi|357116863|ref|XP_003560196.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 528

 Score =  291 bits (745), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 157/433 (36%), Positives = 254/433 (58%), Gaps = 12/433 (2%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           +HAHV++ G L    +++ L+  Y+       A  +F     PDVVSWT +++G ++ G 
Sbjct: 77  LHAHVVKLGCLDRRRVRDGLVALYLACGQGAVARALFERGA-PDVVSWTAMVTGHTRLGL 135

Query: 92  HKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD----N 147
            +EA  +F  +      + + +  +  +   +  LG A   H  R + +  + LD    N
Sbjct: 136 FEEAAALFLAMADGVAVDAVAAAAAFAACAGAGDLGLARETH--RRVLDAGVALDVVACN 193

Query: 148 AILDFYIRCGSLASCGYLFVKM-PKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           A++D Y +CG  A+    F +M P +NVVSW TMI   A  G  +EA+S F+EM+++   
Sbjct: 194 ALIDMYAKCGDAAAARRCFRRMLPAKNVVSWNTMIAACARSGDTREALSWFREMQRSGCV 253

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
            P++AT V VL AC+ + AL  G++VH+Y+  R+  +V  +VGNA+++MY KCG V  A 
Sbjct: 254 RPDDATFVAVLGACADLGALDAGRWVHAYMMGRHTKAV--VVGNALLDMYAKCGAVDGAK 311

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
           +VF+ +  +D  +++++ISGLAM+G G++AL L + M    V P+ VTF+ ++SAC H G
Sbjct: 312 EVFDAMPRRDVYTYTSMISGLAMHGRGQEALALLADMRRAGVRPNAVTFLGVLSACCHAG 371

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 386
           LV++GL+ F A+     + P ++HY CVVDM GRAG L+EAE  +  MP   +  +WG+L
Sbjct: 372 LVEEGLLHFNAIPESLGVAPGIEHYGCVVDMLGRAGRLDEAEELVARMPARPDALIWGSL 431

Query: 387 LNACRIHRNDEMFDRIRQDLVNKKG--VSVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444
           L+ACR H +    +R+ + + +  G     G + LMSN +A   R     ++R ++RR  
Sbjct: 432 LSACRAHGHVARAERVMRRMADVDGDLADAGDYVLMSNMYASKGRHGKAVQLRKQMRRGR 491

Query: 445 LKKKTGCSWIEVN 457
           + K  GCS IE++
Sbjct: 492 MDKVPGCSLIEID 504



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 137/269 (50%), Gaps = 8/269 (2%)

Query: 29  ALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV-FPDVVSWTTIISGLS 87
           A E H  V++ G   D+   N+L+  Y    D  +A + F  ++   +VVSW T+I+  +
Sbjct: 173 ARETHRRVLDAGVALDVVACNALIDMYAKCGDAAAARRCFRRMLPAKNVVSWNTMIAACA 232

Query: 88  KCGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNI 143
           + G  +EA+  F  +     V+P+  T V+VL AC+ L +   G+ +HA+ +   +   +
Sbjct: 233 RSGDTREALSWFREMQRSGCVRPDDATFVAVLGACADLGALDAGRWVHAYMM-GRHTKAV 291

Query: 144 ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
           ++ NA+LD Y +CG++     +F  MP+R+V ++T+MI G A  G  +EA+++  +M + 
Sbjct: 292 VVGNALLDMYAKCGAVDGAKEVFDAMPRRDVYTYTSMISGLAMHGRGQEALALLADMRRA 351

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
               PN  T + VLSAC     +  G    + I     ++        V++M  + G + 
Sbjct: 352 G-VRPNAVTFLGVLSACCHAGLVEEGLLHFNAIPESLGVAPGIEHYGCVVDMLGRAGRLD 410

Query: 264 IAIQ-VFNMLAYKDKISWSTVISGLAMNG 291
            A + V  M A  D + W +++S    +G
Sbjct: 411 EAEELVARMPARPDALIWGSLLSACRAHG 439


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  291 bits (745), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 151/457 (33%), Positives = 261/457 (57%), Gaps = 9/457 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +T    L  C      Q   E+H +   +G   +  + N+ +  Y     + S+ ++F
Sbjct: 306 DEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVF 365

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLVS 123
           + +    V SW  ++ G ++    ++A+D++      G+D  P+  T+ S+L ACS + S
Sbjct: 366 DLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLD--PDWFTIGSLLLACSRMKS 423

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
              G+ IH  +LRN    +  +  ++L  YI CG   +   LF  M  R++VSW  MI G
Sbjct: 424 LHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAG 483

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           Y++ G   EA+++F++M  +   +P E  ++ V  ACS +SAL  GK +H + + +  L+
Sbjct: 484 YSQNGLPDEAINLFRQM-LSDGIQPYEIAIMCVCGACSQLSALRLGKELHCF-ALKAHLT 541

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
               V +++I+MY K G +G++ ++F+ L  KD  SW+ +I+G  ++G G++AL+LF  M
Sbjct: 542 EDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKM 601

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
           +   + PDD TF  ++ ACSH GLV+ GL  F  M  ++ I P+++HY CVVDM GRAG 
Sbjct: 602 LRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGR 661

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           +++A   I EMP + +  +W +LL++CRIH N  + +++   L+  +      + L+SN 
Sbjct: 662 IDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNL 721

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           FAG+ +W+D  ++R  ++ +GL+K  GCSWIEV   +
Sbjct: 722 FAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKV 758



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/324 (31%), Positives = 175/324 (54%), Gaps = 11/324 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +++T    +KAC+          IH    +   + D+F+ N+L+  Y     +  A ++F
Sbjct: 100 DNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVF 159

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK-----PNANTLVSVLSACSSLVS 123
             +   ++VSW +II G S+ GF +E+ + F  + V      P+  TLV+VL  C+    
Sbjct: 160 EHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEED 219

Query: 124 HKLGKAIHAHSLR-NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
            + G A+H  +++  LNE  ++++N+++D Y +C  L+    LF K  K+N+VSW +MIG
Sbjct: 220 IEKGMAVHGLAVKLGLNEE-LMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIG 278

Query: 183 GYA-ERGFCKEAVSVFQEME-KTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           GYA E   C+    + Q+M+ +  + + +E T++NVL  C   S L   K +H Y S R+
Sbjct: 279 GYAREEDVCR-TFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGY-SWRH 336

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
            L  + LV NA I  Y +CG +  + +VF+++  K   SW+ ++ G A N   R+AL L+
Sbjct: 337 GLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLY 396

Query: 301 SLMIINAVFPDDVTFIALISACSH 324
             M  + + PD  T  +L+ ACS 
Sbjct: 397 LQMTDSGLDPDWFTIGSLLLACSR 420



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 146/278 (52%), Gaps = 7/278 (2%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNS-LLHFYVTVKDIFSAHQIFNSVVFPD 75
           L+AC      +    +H  V       + F+ N+ ++  Y        +  +F+ +   +
Sbjct: 5   LQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKN 64

Query: 76  VVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIH 131
           +  W  I+S  ++    ++A+ +F  +    + KP+  TL  V+ AC+ L+   LG+ IH
Sbjct: 65  LFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIH 124

Query: 132 AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
             + +    +++ + NA++  Y +CG +     +F  MP+RN+VSW ++I G++E GF +
Sbjct: 125 GMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQ 184

Query: 192 EAVSVFQEMEKTKEA-EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGN 250
           E+ + F+EM   +E+  P+ ATLV VL  C+    +  G  VH  ++ +  L+   +V N
Sbjct: 185 ESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHG-LAVKLGLNEELMVNN 243

Query: 251 AVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
           ++I+MY KC  +  A  +F+    K+ +SW+++I G A
Sbjct: 244 SLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYA 281



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 107/240 (44%), Gaps = 12/240 (5%)

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           +L AC     +  G+ +H  +S         ++   +I MY  CG    +  VF+ L  K
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMI-INAVFPDDVTFIALISACSHGGLVDQGL-I 333
           +   W+ ++S    N     A+ +FS +I +    PD+ T   +I AC+  GL+D GL  
Sbjct: 64  NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACA--GLLDLGLGQ 121

Query: 334 LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           +   M+T  ++V  +     ++ MYG+ GL+EEA      MP E     W +++  C   
Sbjct: 122 IIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMP-ERNLVSWNSII--CGFS 178

Query: 394 RN---DEMFDRIRQDLVNKKGV--SVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
            N    E F+  R+ LV ++     V T   +    AG +  E    +     ++GL ++
Sbjct: 179 ENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEE 238


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  291 bits (745), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 160/492 (32%), Positives = 271/492 (55%), Gaps = 41/492 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N Y+F  AL AC+        ++IHA + +  +L D+++ ++L+  Y     +  A + F
Sbjct: 150 NEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAF 209

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           + +   ++VSW ++I+   + G   +A+++F  +    V+P+  TL SV+SAC+S  + +
Sbjct: 210 DGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIR 269

Query: 126 LGKAIHAHSL-RNLNENNIILDNAILDFYIRCGSLAS--------------------CGY 164
            G  IHA  + R+   N+++L NA++D Y +C  +                      CGY
Sbjct: 270 EGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGY 329

Query: 165 -----------LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATL 213
                      +F  M ++NVVSW  +I GY + G  +EAV +F  + K +   P   T 
Sbjct: 330 ARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLL-KRESIWPTHYTF 388

Query: 214 VNVLSACSSISALSFGKYVHSYIST-----RYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
            N+L+AC++++ L  G+  H+ I       +        VGN++I+MY+KCG V     V
Sbjct: 389 GNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLV 448

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F  +  +D +SW+ +I G A NG G  AL++F  M+++   PD VT I ++SACSH GLV
Sbjct: 449 FERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLV 508

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
           ++G   F +M T   + P   H+ C+VD+ GRAG L+EA   I+ MP++ +  VWG+LL 
Sbjct: 509 EEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLA 568

Query: 389 ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
           AC++H N E+   + + L+    ++ G + L+SN +A   RW+D  ++R ++R+ G+ K+
Sbjct: 569 ACKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQ 628

Query: 449 TGCSWIEVNPSI 460
            GCSWIE+   +
Sbjct: 629 PGCSWIEIQSRV 640



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 117/451 (25%), Positives = 200/451 (44%), Gaps = 84/451 (18%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFY---------------VT 57
           F + L +C  +     A  IHA +I+     +IFIQN L+  Y               + 
Sbjct: 22  FAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMP 81

Query: 58  VKDIFS----------------AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG 101
            ++ FS                A  +F S+  PD  SW  ++SG ++    +EA+  F  
Sbjct: 82  QRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVD 141

Query: 102 I---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGS 158
           +   D   N  +  S LSAC+ L    +G  IHA   ++    ++ + +A++D Y +CG 
Sbjct: 142 MHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGV 201

Query: 159 LASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLS 218
           +A     F  M  RN+VSW ++I  Y + G   +A+ VF  M      EP+E TL +V+S
Sbjct: 202 VACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNG-VEPDEITLASVVS 260

Query: 219 ACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY---- 274
           AC+S SA+  G  +H+ +  R       ++GNA+++MY KC  V  A  VF+ +      
Sbjct: 261 ACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVV 320

Query: 275 ---------------------------KDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
                                      K+ +SW+ +I+G   NG   +A++LF L+   +
Sbjct: 321 SETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRES 380

Query: 308 VFPDDVTFIALISAC-----------SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
           ++P   TF  L++AC           +H  ++  G   F++       V        ++D
Sbjct: 381 IWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGF-WFQSGEESDIFVGN-----SLID 434

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           MY + G++E+    + E  +E +   W A++
Sbjct: 435 MYMKCGMVEDG-CLVFERMVERDVVSWNAMI 464



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 160/324 (49%), Gaps = 39/324 (12%)

Query: 86  LSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
           + + GF ++ +   C +D  P A  L S + + S + + +    IHA  ++    + I +
Sbjct: 1   MGRHGFVQKLVGELCFLDSSPFAKLLDSCVRSKSGIDARR----IHARIIKTQFSSEIFI 56

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVV------------------------------ 175
            N ++D Y +CG       +F +MP+RN                                
Sbjct: 57  QNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQ 116

Query: 176 -SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
            SW  M+ G+A+    +EA+  F +M  +++   NE +  + LSAC+ ++ L+ G  +H+
Sbjct: 117 CSWNAMVSGFAQHDRFEEALRFFVDMH-SEDFVLNEYSFGSALSACAGLTDLNMGIQIHA 175

Query: 235 YIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG 293
            IS +RY L V   +G+A+++MY KCG V  A + F+ +A ++ +SW+++I+    NG  
Sbjct: 176 LISKSRYLLDV--YMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPA 233

Query: 294 RQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
            +AL++F +M+ N V PD++T  +++SAC+    + +GL +   +    +    +     
Sbjct: 234 GKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNA 293

Query: 354 VVDMYGRAGLLEEAEAFIREMPIE 377
           +VDMY +   + EA      MP+ 
Sbjct: 294 LVDMYAKCRRVNEARLVFDRMPLR 317


>gi|255572939|ref|XP_002527400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533210|gb|EEF34966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 621

 Score =  291 bits (744), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 167/530 (31%), Positives = 270/530 (50%), Gaps = 82/530 (15%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +TF   ++AC+          IH HV+E G    + + N L+  Y  +  +  A  +F+ 
Sbjct: 43  FTFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKLGRMRDARHLFDR 102

Query: 71  V--------------------------VF---------PDVVSWTTIISGLSKCGFHKEA 95
           +                          +F         P++V+WT++IS  ++ G+H+EA
Sbjct: 103 MSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLISSYARSGWHEEA 162

Query: 96  IDMFC-----GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAIL 150
           +++F      G++V   A  L  V+S C+ L +    K IH ++++   E    + +A++
Sbjct: 163 MELFGLMRMKGVEVSGEA--LAVVISICADLGAFVRAKIIHEYAVKGGFEEYSFVKSALI 220

Query: 151 DFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT------- 203
             Y + G +     LF++M  +++ SW  +I  +AE G C EA+ +F ++E++       
Sbjct: 221 CVYGKHGDVNGAWNLFLEMKNKSLASWNALITSHAEAGLCDEALEIFSQLERSGDCPRLR 280

Query: 204 -----------------KEAEP--------------NEATLVNVLSACSSISALSFGKYV 232
                            +E E               N  T+  VLS C+ ++AL  G+ +
Sbjct: 281 PNVVSWSAIIDGFASKGREKEALELFRRMQHAKILANAVTISTVLSLCAELAALHLGREI 340

Query: 233 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
           H ++  R  +  + LVGN ++NMY KCG +     +F     KD ISW+++I+G  M+G 
Sbjct: 341 HGHV-VRAVMVNNILVGNGLVNMYAKCGCLKEGHMIFEKTERKDLISWNSMITGYGMHGL 399

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
           G  AL+ F  MI     PD VTF+A++S+CSH GLV +G  LF  M   Y I PQM+HYA
Sbjct: 400 GMNALETFDQMIKLGFKPDGVTFVAVLSSCSHSGLVHEGRRLFDQMLKKYRIEPQMEHYA 459

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVN-KKG 411
           C+VD+ GRAGLL EA   ++ MP+     VWGALLN+CR+H N E+ +     L N    
Sbjct: 460 CMVDLLGRAGLLREASEIVKNMPVAPNACVWGALLNSCRMHNNTEIAEETASHLFNLSHR 519

Query: 412 VSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
            + GT+ L+SN +A + RWED+ ++R   +  GLKK  G SWI+V  +++
Sbjct: 520 ETTGTYMLLSNIYAASGRWEDSARVRTSAKTKGLKKNPGQSWIKVEKNVY 569



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 7/179 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T +  L  C+         EIH HV+    +++I + N L++ Y     +   H IF
Sbjct: 317 NAVTISTVLSLCAELAALHLGREIHGHVVRAVMVNNILVGNGLVNMYAKCGCLKEGHMIF 376

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACS-SLVSH 124
                 D++SW ++I+G    G    A++ F     +  KP+  T V+VLS+CS S + H
Sbjct: 377 EKTERKDLISWNSMITGYGMHGLGMNALETFDQMIKLGFKPDGVTFVAVLSSCSHSGLVH 436

Query: 125 KLGKAIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMI 181
           + G+ +    L+    E  +     ++D   R G L     +   MP   N   W  ++
Sbjct: 437 E-GRRLFDQMLKKYRIEPQMEHYACMVDLLGRAGLLREASEIVKNMPVAPNACVWGALL 494


>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
 gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
          Length = 695

 Score =  291 bits (744), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 155/475 (32%), Positives = 263/475 (55%), Gaps = 37/475 (7%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           LK+C+ +    +  + H H +  G L D+F+Q +L+ FY    D+ SA   F  +   D 
Sbjct: 181 LKSCAQSAASCQGSQTHCHALVRGMLGDVFVQTALVDFYAKNGDMDSALMAFKEMPVKDP 240

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGIDVK------------------------------- 105
           +    +I+G SK G  +EA  +F  +  +                               
Sbjct: 241 IPMNCLITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLRE 300

Query: 106 ---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC 162
              PNA T+ +V S C+       G+   A  +R  +  N+I+  A+++ Y++C ++   
Sbjct: 301 GASPNAITITTVFSICAKTGDLDTGRRARAW-IREEDLQNVIVHTALMEMYVKCRAIDEA 359

Query: 163 GYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS 222
            + F +MP+R+VV+W+TMI GY++ G   E++ +F+ M+ T   +PNE TLV VLSAC+ 
Sbjct: 360 RHEFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATN-CKPNEVTLVGVLSACAQ 418

Query: 223 ISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWST 282
           + +   G+ + +YI ++  L +++ +G+A+I+MY KCG V  A  VFN +  K  ++W++
Sbjct: 419 LGSDELGEQIGNYIESQT-LPLTSYLGSALIDMYTKCGHVARARSVFNRMEQKVVVTWNS 477

Query: 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 342
           +I GLA+NG    A+ L+  M+ + + P++VTF+AL++AC+H GLVD+G+  F+ M    
Sbjct: 478 MIRGLALNGFAEDAIALYRKMVGDGIQPNEVTFVALLTACTHAGLVDKGIAFFEEMKKKQ 537

Query: 343 EIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRI 402
            + PQ++H AC+VD+  ++G L EA  FI +M +E    +W  LL+ACR H + E+    
Sbjct: 538 HVSPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLA 597

Query: 403 RQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
              LV  +  +   + L+SN +A A  W D  +IRD +R   L+K +  SWIE++
Sbjct: 598 AGKLVALEPNNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLSAYSWIELD 652



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 182/406 (44%), Gaps = 51/406 (12%)

Query: 6   SSYNHYTFTQALKACS-LAHPHQKALEIH-AHVIEYGHLHDIFIQNSLLHFYVTVKDIFS 63
           ++ +HY  +  L   S L  P +  L    A +++   LH +    S            +
Sbjct: 76  AAADHYRCSSKLPTASRLPSPTEPHLPADLARLLKTRPLHALLSNASTYR---------A 126

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNA---NTLVSVLSACSS 120
           A  +F+ V  P        +SGLSK   H+E I++   +  +  A     +  VL +C+ 
Sbjct: 127 ARHLFDVVPRPTAALCCAFLSGLSKLSLHQEFIEVVSSLHRRGGAIPSGCIPLVLKSCAQ 186

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC------------------ 162
             +   G   H H+L      ++ +  A++DFY + G + S                   
Sbjct: 187 SAASCQGSQTHCHALVRGMLGDVFVQTALVDFYAKNGDMDSALMAFKEMPVKDPIPMNCL 246

Query: 163 --GY-----------LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN 209
             GY           LF  MP+R   SW +MI  YA  G  +EA+++F +M + + A PN
Sbjct: 247 ITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLR-EGASPN 305

Query: 210 EATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF 269
             T+  V S C+    L  G+   ++I  R +   + +V  A++ MYVKC  +  A   F
Sbjct: 306 AITITTVFSICAKTGDLDTGRRARAWI--REEDLQNVIVHTALMEMYVKCRAIDEARHEF 363

Query: 270 NMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVD 329
           + +  +D ++WST+I+G + NG   ++L+LF  M      P++VT + ++SAC+  G  +
Sbjct: 364 DRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDE 423

Query: 330 QGLILFKAMSTVYEIVPQMQHY-ACVVDMYGRAGLLEEAEAFIREM 374
            G  +   + +  + +P   +  + ++DMY + G +  A +    M
Sbjct: 424 LGEQIGNYIES--QTLPLTSYLGSALIDMYTKCGHVARARSVFNRM 467



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 145/290 (50%), Gaps = 6/290 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML   +S N  T T     C+            A + E   L ++ +  +L+  YV  + 
Sbjct: 297 MLREGASPNAITITTVFSICAKTGDLDTGRRARAWIREE-DLQNVIVHTALMEMYVKCRA 355

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSA 117
           I  A   F+ +   DVV+W+T+I+G S+ G   E++++F      + KPN  TLV VLSA
Sbjct: 356 IDEARHEFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSA 415

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C+ L S +LG+ I  +           L +A++D Y +CG +A    +F +M ++ VV+W
Sbjct: 416 CAQLGSDELGEQIGNYIESQTLPLTSYLGSALIDMYTKCGHVARARSVFNRMEQKVVVTW 475

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
            +MI G A  GF ++A++++++M      +PNE T V +L+AC+    +  G      + 
Sbjct: 476 NSMIRGLALNGFAEDAIALYRKMVGDG-IQPNEVTFVALLTACTHAGLVDKGIAFFEEMK 534

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDKISWSTVISG 286
            +  +S        ++++  K G +  A + + +M    + + WST++S 
Sbjct: 535 KKQHVSPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWSTLLSA 584


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  290 bits (743), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 162/435 (37%), Positives = 256/435 (58%), Gaps = 10/435 (2%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS--K 88
           E+H H +E G + D+ + ++ +H Y+    I  A  IF+ +   +V +W  +I G++  K
Sbjct: 356 EVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQK 415

Query: 89  CGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
           CG  +EA+ +F  +  +   P+A T V++LSA     + +  K +H++++ +    ++ +
Sbjct: 416 CG--REALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAI-DAGLVDLRV 472

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            NA++  Y +CG+      +F  M +RNV +WT MI G A+ G   EA S+F +M + + 
Sbjct: 473 GNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLR-EG 531

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
             P+  T V++LSAC+S  AL + K VHS+ +    L     VGNA+++MY KCG V  A
Sbjct: 532 IVPDATTYVSILSACASTGALEWVKEVHSH-AVNAGLVSDLRVGNALVHMYAKCGSVDDA 590

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
            +VF+ +  +D  SW+ +I GLA +G G  AL LF  M +    P+  +F+A++SACSH 
Sbjct: 591 RRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHA 650

Query: 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 385
           GLVD+G   F +++  Y I P M+HY C+VD+ GRAG LEEA+ FI  MPIE   + WGA
Sbjct: 651 GLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGA 710

Query: 386 LLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445
           LL AC  + N EM +   ++ +  K  S  T+ L+SN +A    WE    +R  ++R G+
Sbjct: 711 LLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGI 770

Query: 446 KKKTGCSWIEVNPSI 460
           +K+ G SWIEV+  I
Sbjct: 771 RKEPGRSWIEVDNQI 785



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/367 (30%), Positives = 202/367 (55%), Gaps = 10/367 (2%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           E+H H  + G + D+ + N+L+H Y     I  A  +F+ +   DV+SW  +I GL++ G
Sbjct: 255 EVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNG 314

Query: 91  FHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
              EA  +F  +  +   P++ T +S+L+   S  + +  K +H H++     +++ + +
Sbjct: 315 CGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGS 374

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           A +  YIRCGS+     +F K+  RNV +W  MIGG A++   +EA+S+F +M + +   
Sbjct: 375 AFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRR-EGFF 433

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAI 266
           P+  T VN+LSA     AL + K VHSY     D  + +L VGNA+++MY KCG+   A 
Sbjct: 434 PDATTFVNILSANVGEEALEWVKEVHSYA---IDAGLVDLRVGNALVHMYAKCGNTMYAK 490

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
           QVF+ +  ++  +W+ +ISGLA +GCG +A  LF  M+   + PD  T+++++SAC+  G
Sbjct: 491 QVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTG 550

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 386
            ++  +    + +    +V  ++    +V MY + G +++A     +M +E +   W  +
Sbjct: 551 ALEW-VKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDM-LERDVYSWTVM 608

Query: 387 LNACRIH 393
           +     H
Sbjct: 609 IGGLAQH 615



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 124/387 (32%), Positives = 209/387 (54%), Gaps = 11/387 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T+   LKAC      +   +IHAH+I+ G   D+ ++ +L++ YV    I  A  IF
Sbjct: 29  NEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQLIF 88

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHK 125
           + +V  +V+SWT +I GL+  G  +EA   F  +  +   PN+ T VS+L+A +S  + +
Sbjct: 89  DKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALE 148

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
             K +H+H++      ++ + NA++  Y + GS+     +F  M +R++ SWT MIGG A
Sbjct: 149 WVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLA 208

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVL--SACSSISALSFGKYVHSYISTRYDLS 243
           + G  +EA S+F +ME+     PN  T +++L  SA +S  AL + K VH +        
Sbjct: 209 QHGRGQEAFSLFLQMERGG-CLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAG--F 265

Query: 244 VSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
           +S+L VGNA+I+MY KCG +  A  VF+ +  +D ISW+ +I GLA NGCG +A  +F  
Sbjct: 266 ISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLK 325

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
           M      PD  T+++L++     G  +    + K    V  +V  ++  +  V MY R G
Sbjct: 326 MQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEV-GLVSDLRVGSAFVHMYIRCG 384

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNA 389
            +++A+    ++ +    + W A++  
Sbjct: 385 SIDDAQLIFDKLAVR-NVTTWNAMIGG 410



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 102/318 (32%), Positives = 174/318 (54%), Gaps = 7/318 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YT+   L A + A   +   E+H+H +  G   D+ + N+L+H Y     I  A  +F
Sbjct: 130 NSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVF 189

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVL--SACSSLVS 123
           + +V  D+ SWT +I GL++ G  +EA  +F  ++     PN  T +S+L  SA +S  +
Sbjct: 190 DGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGA 249

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            +  K +H H+ +    +++ + NA++  Y +CGS+     +F  M  R+V+SW  MIGG
Sbjct: 250 LEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGG 309

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
            A+ G   EA ++F +M++     P+  T +++L+   S  A  + K VH + +    L 
Sbjct: 310 LAQNGCGHEAFTIFLKMQQEGFV-PDSTTYLSLLNTHVSTGAWEWVKEVHKH-AVEVGLV 367

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
               VG+A ++MY++CG +  A  +F+ LA ++  +W+ +I G+A   CGR+AL LF  M
Sbjct: 368 SDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQM 427

Query: 304 IINAVFPDDVTFIALISA 321
                FPD  TF+ ++SA
Sbjct: 428 RREGFFPDATTFVNILSA 445



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 86/245 (35%), Positives = 150/245 (61%), Gaps = 5/245 (2%)

Query: 82  IISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNL 138
           +I G ++ G+ ++A+ ++  +     +PN  T +S+L AC S VS K GK IHAH +++ 
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 139 NENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQ 198
            ++++ ++ A+++ Y++CGS+     +F KM +RNV+SWT MIGG A  G  +EA   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 199 EMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVK 258
           +M++     PN  T V++L+A +S  AL + K VHS+ +    L++   VGNA+++MY K
Sbjct: 121 QMQREGFI-PNSYTYVSILNANASAGALEWVKEVHSH-AVNAGLALDLRVGNALVHMYAK 178

Query: 259 CGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIAL 318
            G +  A  VF+ +  +D  SW+ +I GLA +G G++A  LF  M      P+  T++++
Sbjct: 179 SGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSI 238

Query: 319 ISACS 323
           ++A +
Sbjct: 239 LNASA 243



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 98/212 (46%), Gaps = 8/212 (3%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T+   L AC+     +   E+H+H +  G + D+ + N+L+H Y     +  A ++F+ +
Sbjct: 538 TYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDM 597

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHKLGK 128
           +  DV SWT +I GL++ G   +A+D+F  + +   KPN  + V+VLSACS       G+
Sbjct: 598 LERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGR 657

Query: 129 AIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIGGYAE 186
                  ++   E  +     ++D   R G L    +  + MP +     W  ++G    
Sbjct: 658 RQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVT 717

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLS 218
            G  + A    +E  K K   P  A+   +LS
Sbjct: 718 YGNLEMAEFAAKERLKLK---PKSASTYVLLS 746


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  290 bits (743), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 162/474 (34%), Positives = 266/474 (56%), Gaps = 27/474 (5%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T+   L+ C+     Q    IH+ +       D  + + L+  YVT  D+    +IF+ V
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVL---------SA 117
               V  W  +++G +K G  +E++ +F      GI    +A  L   L         S 
Sbjct: 163 ANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSM 222

Query: 118 CSSLVSHKLGKA----IHAHSLRNLNEN-------NIILDNAILDFYIRCGSLASCGYLF 166
            S  VS+ L +          L  +N +        + L+N +LD Y + G+L S   +F
Sbjct: 223 ISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVF 282

Query: 167 VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 226
             M +R+VVSWT+MI GYA  G    +V +F EMEK ++  PN  T+  +L AC+S++AL
Sbjct: 283 ETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEK-EDLFPNSITMACILPACASLAAL 341

Query: 227 SFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
             G+ +H +I  R   S+   V NA+++MY+KCG +G+A  +F+M+  KD +SW+ +I+G
Sbjct: 342 ERGQEIHGHI-LRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAG 400

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 346
             M+G G +A+  F+ M  + + PD+V+FI+++ ACSH GL+D+G   F  M     I P
Sbjct: 401 YGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEP 460

Query: 347 QMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDL 406
           + +HYAC+VD+  RAG L +A  FI+ MPIE + ++WGALL  CRI+ + ++ +++ + +
Sbjct: 461 KSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHV 520

Query: 407 VNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
              +  + G + L++N +A A++WE+  K+R+ I R GL+K  GCSWIE+   +
Sbjct: 521 FELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKV 574



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 15/170 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L AC+     ++  EIH H++  G   D  + N+L+  Y+    +  A  +F
Sbjct: 324 NSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLF 383

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           + +   D+VSWT +I+G    G+  EAI  F  +    ++P+  + +S+L AC    SH 
Sbjct: 384 DMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYAC----SHS 439

Query: 126 LGKAIHAHSLRNLNENNIILDNA------ILDFYIRCGSLASCGYLFVKM 169
            G         N+  NN  ++        I+D   R G+L+   Y F+KM
Sbjct: 440 -GLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSK-AYKFIKM 487


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  290 bits (743), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 155/455 (34%), Positives = 262/455 (57%), Gaps = 12/455 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           TF+ AL AC++     +  EI A  +  G+  D  +QN+L++ Y     + SA ++F+ +
Sbjct: 165 TFSSALYACTVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRL 224

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              DV++W T+ISG +K G   +A+++F  +   D KPN  T + +L+AC++L   + G+
Sbjct: 225 KNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGR 284

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGS-LASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           AIH     +  E+++++ N +L+ Y +C S L     +F +M  R+V++W  +I  Y + 
Sbjct: 285 AIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQY 344

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSVSN 246
           G  K+A+ +F++M+  +   PNE TL NVLSAC+ + A   GK VH+ I S R    V  
Sbjct: 345 GQAKDALDIFKQMQ-LENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADV-- 401

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
           ++ N+++NMY +CG +   + VF  +  K  +SWST+I+  A +G  R  L+ F  ++  
Sbjct: 402 VLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQE 461

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
            +  DDVT ++ +SACSHGG++ +G+  F +M   + + P  +H+ C+VD+  RAG LE 
Sbjct: 462 GLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEA 521

Query: 367 AEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV-GTFALMSNTFA 425
           AE  I +MP   +   W +LL+ C++H + +   R+   L   +      T  L+SN +A
Sbjct: 522 AENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYA 581

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            A RW+D  K R+   R   +K  GCS+IE+N ++
Sbjct: 582 EAGRWDDVRKTRN---RRAARKNPGCSYIEINDTV 613



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 110/369 (29%), Positives = 197/369 (53%), Gaps = 25/369 (6%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           F  A+  CS +   ++   +HA ++E   L  DI +  +L+  Y   +D+  A + F+ +
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI------DVKPNANTLVSVLSACSSLVSHK 125
               +V+W  +I+G S+ G H+ A+ ++  +       +KP+A T  S L AC+ +    
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ I A ++ +   ++ I+ NA+++ Y +CGSL S   +F ++  R+V++W TMI GYA
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           ++G   +A+ +FQ M    + +PN  T + +L+AC+++  L  G+ +H  +  R D   S
Sbjct: 241 KQGAATQALELFQRM-GPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKV--REDGYES 297

Query: 246 NLV-GNAVINMYVKC-GDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           +LV GN ++NMY KC   +  A QVF  +  +D I+W+ +I      G  + AL +F  M
Sbjct: 298 DLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQM 357

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVV------DM 357
            +  V P+++T   ++SAC+  G   QG         V+ ++   +  A VV      +M
Sbjct: 358 QLENVAPNEITLSNVLSACAVLGAKRQG-------KAVHALIASGRCKADVVLENSLMNM 410

Query: 358 YGRAGLLEE 366
           Y R G L++
Sbjct: 411 YNRCGSLDD 419



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 163/290 (56%), Gaps = 9/290 (3%)

Query: 54  FYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANT 110
            Y     +  A  +F+++  P+ VSWT I++  ++ G ++EA+  +  +    ++P+   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 111 LVSVLSACSSLVSHKLGKAIHAHSLR-NLNENNIILDNAILDFYIRCGSLASCGYLFVKM 169
            V  +  CSS    K G+ +HA  L   L E +IIL  A++  Y RC  L      F +M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 170 PKRNVVSWTTMIGGYAERGFCKEAVSVFQEM-EKTKEA-EPNEATLVNVLSACSSISALS 227
            K+ +V+W  +I GY+  G  + A+ ++Q+M  K+ E  +P+  T  + L AC+ +  +S
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 228 FGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
            G+ + +  +++ Y  +  ++V NA+INMY KCG +  A +VF+ L  +D I+W+T+ISG
Sbjct: 181 QGREIEARTVASGY--ASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISG 238

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFK 336
            A  G   QAL+LF  M  N   P+ VTFI L++AC++   ++QG  + +
Sbjct: 239 YAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHR 288



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 161/305 (52%), Gaps = 14/305 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV-KDIFSAHQI 67
           N  TF   L AC+     ++   IH  V E G+  D+ I N LL+ Y      +  A Q+
Sbjct: 263 NVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQV 322

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSH 124
           F  +   DV++W  +I    + G  K+A+D+F  +   +V PN  TL +VLSAC+ L + 
Sbjct: 323 FERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAK 382

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           + GKA+HA       + +++L+N++++ Y RCGSL     +F  +  +++VSW+T+I  Y
Sbjct: 383 RQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAY 442

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           A+ G  +  +  F E+ +   A  ++ T+V+ LSACS    L  G  V +++S   D  +
Sbjct: 443 AQHGHSRTGLEHFWELLQEGLA-ADDVTMVSTLSACSHGGMLKEG--VQTFLSMVGDHGL 499

Query: 245 SNLVGN--AVINMYVKCGDVGIAIQVFNMLAY-KDKISWSTVISGLAMNG----CGRQAL 297
           +    +   ++++  + G +  A  + + + +  D ++W++++SG  ++       R A 
Sbjct: 500 APDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVAD 559

Query: 298 QLFSL 302
           +LF L
Sbjct: 560 KLFEL 564



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 117/221 (52%), Gaps = 7/221 (3%)

Query: 152 FYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEA 211
            Y +CGS+A    +F  +   N VSWT ++  +A  G  +EA+  ++ M   +   P+ A
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRM-VLEGLRPDGA 59

Query: 212 TLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 271
             V  +  CSS   L  G+ +H+ I     L    ++G A+I MY +C D+ +A + F+ 
Sbjct: 60  MFVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDE 119

Query: 272 LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA---VFPDDVTFIALISACSHGGLV 328
           +  K  ++W+ +I+G + NG  R AL+++  M+  +   + PD +TF + + AC+  G +
Sbjct: 120 MGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDI 179

Query: 329 DQGL-ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            QG  I  + +++ Y     +Q+   +++MY + G LE A 
Sbjct: 180 SQGREIEARTVASGYASDSIVQN--ALINMYSKCGSLESAR 218



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 1/155 (0%)

Query: 255 MYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVT 314
           MY KCG V  A+ VF+ + + + +SW+ +++  A NG  R+AL  +  M++  + PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
           F+  I  CS    + QG +L   +     +   +     ++ MY R   LE A     EM
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 375 PIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNK 409
             +     W AL+     + +     +I QD+V+K
Sbjct: 121 G-KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSK 154



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 97/216 (44%), Gaps = 12/216 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T +  L AC++    ++   +HA +       D+ ++NSL++ Y     +     +F
Sbjct: 365 NEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVF 424

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
            ++    +VSW+T+I+  ++ G  +  ++ F  +    +  +  T+VS LSACS     K
Sbjct: 425 AAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLK 484

Query: 126 LGKAIHAHSLRNLNENNIILDN----AILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTM 180
            G       L  + ++ +  D      ++D   R G L +   L   MP   + V+WT++
Sbjct: 485 EGVQTF---LSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSL 541

Query: 181 IGGYAERGFCKEAVSVFQEM-EKTKEAEPNEATLVN 215
           + G       K A  V  ++ E   E E +  TL++
Sbjct: 542 LSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLS 577


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  290 bits (743), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 156/465 (33%), Positives = 267/465 (57%), Gaps = 16/465 (3%)

Query: 3   SCPSSYNHYTFTQALKAC-SLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV--- 58
           +CP S   Y   + +    S A    K  +IHA  I +G    + + N  +  Y+     
Sbjct: 29  TCPESPKSYILKKCIALLLSCASSKFKFRQIHAFSIRHG----VPLTNPDMGKYLIFTLL 84

Query: 59  ---KDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLV 112
                +  AHQIF+ +  P++ +W T+I G ++      A++++  + V   +P+ +T  
Sbjct: 85  SFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYP 144

Query: 113 SVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKR 172
            +L A + L+  + G+ +H+ ++RN  E+ + + N ++  Y  CG   S   LF  M +R
Sbjct: 145 FLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAER 204

Query: 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYV 232
           N+V+W ++I GYA  G   EA+++F+EM   +  EP+  T+V++LSAC+ + AL+ G+  
Sbjct: 205 NLVTWNSVINGYALNGRPNEALTLFREM-GLRGVEPDGFTMVSLLSACAELGALALGRRA 263

Query: 233 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
           H Y+  +  L  +   GNA++++Y KCG +  A +VF+ +  K  +SW+++I GLA+NG 
Sbjct: 264 HVYM-VKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGF 322

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
           G++AL+LF  +    + P ++TF+ ++ ACSH G+VD+G   FK M   Y IVP+++HY 
Sbjct: 323 GKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYG 382

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           C+VD+ GRAGL+++A  FI+ MP++    VW  LL AC IH +  + +  R  L+  +  
Sbjct: 383 CMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPK 442

Query: 413 SVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
             G + L+SN +A   RW D +K+R  + R G+KK  G S +E+ 
Sbjct: 443 HSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELR 487


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  290 bits (743), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 170/529 (32%), Positives = 278/529 (52%), Gaps = 71/529 (13%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+S   S   +TFT  L +C+ A       ++H+ V++ G    + + NSLL+ Y    D
Sbjct: 136 MVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGD 195

Query: 61  ---------------------IFSAHQ----------IFNSVVFPDVVSWTTIISGLSKC 89
                                + S H           +F+ +  PD+VSW +II+G    
Sbjct: 196 SVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQ 255

Query: 90  GFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR--------- 136
           G+   A++ F  +     +KP+  TL SVLSAC++  S KLGK IHAH +R         
Sbjct: 256 GYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAV 315

Query: 137 ------------------------NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKR 172
                                        N+I   ++LD Y + G +     +F  +  R
Sbjct: 316 GNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHR 375

Query: 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYV 232
           +VV+WT MI GYA+ G   +A+ +F+ M + +  +PN  TL  VLS  SS+++L  GK +
Sbjct: 376 DVVAWTAMIVGYAQNGLISDALVLFRLMIR-EGPKPNNYTLAAVLSVISSLASLDHGKQL 434

Query: 233 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML-AYKDKISWSTVISGLAMNG 291
           H+ ++ R +   S  VGNA+I MY + G +  A ++FN + +Y+D ++W+++I  LA +G
Sbjct: 435 HA-VAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHG 493

Query: 292 CGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY 351
            G +A++LF  M+   + PD +T++ ++SAC+H GLV+QG   F  M  V+ I P   HY
Sbjct: 494 LGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHY 553

Query: 352 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKG 411
           AC++D+ GRAGLLEEA  FIR MPIE +   WG+LL++CR+H+  ++     + L+    
Sbjct: 554 ACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDP 613

Query: 412 VSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            + G +  ++NT +   +WED  K+R  ++   +KK+ G SW+++   +
Sbjct: 614 NNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKV 662



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 192/413 (46%), Gaps = 69/413 (16%)

Query: 42  LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG 101
           L   F  N++L  +    ++ SA ++F+ +  PD VSWTT+I G +  G  K A+  F  
Sbjct: 76  LKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLR 135

Query: 102 I---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGS 158
           +    + P   T  +VL++C++  +  +GK +H+  ++      + + N++L+ Y +CG 
Sbjct: 136 MVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGD 195

Query: 159 --------------------------LASCGY-----LFVKMPKRNVVSWTTMIGGYAER 187
                                     +  C +     LF +M   ++VSW ++I GY  +
Sbjct: 196 SVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQ 255

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G+   A+  F  M K+   +P++ TL +VLSAC++  +L  GK +H++I  R D+ ++  
Sbjct: 256 GYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHI-VRADVDIAGA 314

Query: 248 VGNAVINMYVKC---------------------------------GDVGIAIQVFNMLAY 274
           VGNA+I+MY K                                  GD+  A  +F+ L +
Sbjct: 315 VGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKH 374

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           +D ++W+ +I G A NG    AL LF LMI     P++ T  A++S  S    +D G  L
Sbjct: 375 RDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQL 434

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
             A++   E V  +     ++ MY R+G +++A      +    +   W +++
Sbjct: 435 -HAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMI 486



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 118/258 (45%), Gaps = 46/258 (17%)

Query: 126 LGKAIHA----HSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV------- 174
           +G+ IHA    H LR L    + L N +L+ Y++ GS +    LF +MP +         
Sbjct: 30  IGRCIHARIIKHGLRYLG---VFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTIL 86

Query: 175 ------------------------VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNE 210
                                   VSWTTMI GY   G  K AV  F  M  +    P +
Sbjct: 87  SAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSG-ISPTQ 145

Query: 211 ATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN 270
            T  NVL++C++  AL  GK VHS++  +   S    V N+++NMY KCGD  +A  VF+
Sbjct: 146 FTFTNVLASCAAAQALDVGKKVHSFV-VKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFD 204

Query: 271 MLAYKDKISWSTVISGLAMNGCGRQ-ALQLFSLMIINAVFPDDVTFIALISACSHGGLVD 329
            +  KD  +W+T+IS + M  C    AL LF  M      PD V++ ++I+   H G   
Sbjct: 205 RMRLKDTSTWNTMIS-MHMQFCQFDLALALFDQM----TDPDIVSWNSIITGYCHQGYDI 259

Query: 330 QGLILFKAMSTVYEIVPQ 347
           + L  F  M     + P 
Sbjct: 260 RALETFSFMLKSSSLKPD 277


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 153/466 (32%), Positives = 273/466 (58%), Gaps = 17/466 (3%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+S     +  TFT  L + + +   ++  EIH +++ +G + D+++ ++L+  Y   +D
Sbjct: 203 MISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRD 262

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSA 117
              A ++FN     D+V +T +ISG    G +K+A+++F  +  K   PNA T  S+L A
Sbjct: 263 AVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPA 322

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C+ L + KLG+ +H + ++N  E    + +AI++ Y +CG L     +F ++  ++ + W
Sbjct: 323 CAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLAHLIFGRISIKDAICW 382

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI- 236
            ++I  +++ G  +EA+ +F++M   +  + +  T+   LSAC++I AL +GK +H ++ 
Sbjct: 383 NSIITSFSQDGKPEEAIYLFRQM-GMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMI 441

Query: 237 -----STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNG 291
                S  +D+S       A+INMY KCG + IA  VFN++  K++++W+++I+    +G
Sbjct: 442 KGAFESDLFDMS-------ALINMYAKCGKLNIARLVFNLMQEKNEVAWNSIIAAYGYHG 494

Query: 292 CGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY 351
               +L LF  M+   + PD +TF+ ++S+C H G V+ G+  F+ M+  Y I  QM+HY
Sbjct: 495 YLADSLALFHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVRYFRCMTEEYGIPAQMEHY 554

Query: 352 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKG 411
           AC+ D++GRAG L+EA   I  MP     SVWG LL ACR+H N E+ +   + L++ + 
Sbjct: 555 ACMADLFGRAGHLDEAFEVITSMPFPPAASVWGTLLGACRVHGNVELAEVASRYLLDLEP 614

Query: 412 VSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            + G + L+++  A A +W   +KI+  ++  G++K  GCSWIEVN
Sbjct: 615 KNSGYYLLLTHVLADAGKWRSVHKIQHLMKERGVQKVPGCSWIEVN 660



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 190/380 (50%), Gaps = 6/380 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML C    + YTF   +K C+  +  +    I   ++E G   D+F+ +SL+  Y     
Sbjct: 1   MLGCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGC 60

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           I  A + F+ ++  D V W  +I+G  +CG    AI +F  +   + KP++ T   VLS 
Sbjct: 61  IEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSI 120

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
             S    + G+ +H   +R+  +   ++ N ++  Y +   L     LF  MP+ ++V W
Sbjct: 121 SCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVW 180

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
             MIGGY + GF  +A  +F EM  +   +P+  T  + L + +  S+L   K +H YI 
Sbjct: 181 NRMIGGYVQNGFMDDASMLFNEM-ISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYI- 238

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            R+ + +   + +A+I++Y KC D  +A ++FN+    D + ++ +ISG  +NG  + AL
Sbjct: 239 VRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDAL 298

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
           ++F  ++   + P+ +TF +++ AC+    +  G  L   +    E+  +    + +++M
Sbjct: 299 EIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYI-IKNELEEKCPVGSAIMNM 357

Query: 358 YGRAGLLEEAEAFIREMPIE 377
           Y + G L+ A      + I+
Sbjct: 358 YAKCGRLDLAHLIFGRISIK 377


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 172/529 (32%), Positives = 286/529 (54%), Gaps = 71/529 (13%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFY----- 55
           M+S       +T T  L +C+         ++H+ V+++G    I + NSLL+ Y     
Sbjct: 136 MVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGD 195

Query: 56  -VTVKDIFSAHQI-------------------------FNSVVFPDVVSWTTIISGLSKC 89
            VT K +F   ++                         F  ++  DVVSW  +ISG ++ 
Sbjct: 196 PVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQH 255

Query: 90  GFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRN-------- 137
           GF +EA+D+F  +      KP+  TL S LSAC++L + KLGK IHAH +R         
Sbjct: 256 GFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAV 315

Query: 138 -------------------------LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKR 172
                                    ++  ++I   A+LD Y++ G +     +F  +  R
Sbjct: 316 GNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVR 375

Query: 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYV 232
           +VV+WT MI GY + GF ++A+ +F+ M K +  +PN  TL  +LS  SS+++L  G+ +
Sbjct: 376 DVVAWTAMIVGYVQNGFNQDAMELFRSMIK-EGPKPNNYTLATMLSVSSSLASLDHGRQI 434

Query: 233 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DKISWSTVISGLAMNG 291
           H+  +TR   + S  V NA+I MY K G +  A  VFN++ +K D I+W+++I  LA +G
Sbjct: 435 HAS-ATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHG 493

Query: 292 CGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY 351
            G +AL LF  M+ N + PD +T++ ++SAC+H GLV+QG   +  M   ++I+P   HY
Sbjct: 494 LGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHY 553

Query: 352 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKG 411
           AC++D++GRAGLL+EA AFI  MPIE +   WG+LL +C++H+N E+ +   + L+  + 
Sbjct: 554 ACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEP 613

Query: 412 VSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            + G ++ ++N ++   +WE+   IR  ++  G+KK  G SW+++   +
Sbjct: 614 ENSGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKV 662



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 118/476 (24%), Positives = 215/476 (45%), Gaps = 104/476 (21%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFY---------------VTVKDIFS------------- 63
           IHA +I+ G    +F+ N+L++FY               + VK +FS             
Sbjct: 35  IHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAKGGR 94

Query: 64  ---AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
              AH++F  +  PD VSWT +I G ++ G  + AI MF  +   DV P   TL +VL++
Sbjct: 95  LEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLAS 154

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP------- 170
           C+++    +G+ +H+  +++   + I + N++L+ Y + G   +   +F +M        
Sbjct: 155 CAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSW 214

Query: 171 ------------------------KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
                                   +R+VVSW  MI GY + GF +EA+ +F +M     +
Sbjct: 215 NTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSS 274

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINM----------- 255
           +P++ TL + LSAC+++  L  GK +H++I  R +      VGNA+I+M           
Sbjct: 275 KPDKFTLASALSACANLENLKLGKQIHAHI-IRTEFDTFGAVGNALISMYSKSGGVEIAQ 333

Query: 256 ----------------------YVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG 293
                                 YVK GD+  A ++F+ L  +D ++W+ +I G   NG  
Sbjct: 334 KIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFN 393

Query: 294 RQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
           + A++LF  MI     P++ T   ++S  S    +D G  +  A +T       +     
Sbjct: 394 QDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQI-HASATRSGNASSVSVSNA 452

Query: 354 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDRIRQD 405
           ++ MY ++G + +A      +  + +   W +++ A   H   E    +F+R+ ++
Sbjct: 453 LITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLEN 508



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 144/313 (46%), Gaps = 72/313 (23%)

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           GK+IHA  ++      + L N +++FY + G +     +F +MP ++V SW  ++ GYA+
Sbjct: 32  GKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAK 91

Query: 187 RGFCKEAVSVFQEMEK------------------------------TKEAEPNEATLVNV 216
            G  +EA  VF+EM +                              + +  P + TL NV
Sbjct: 92  GGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNV 151

Query: 217 LSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK- 275
           L++C+++  L  G+ VHS++  ++ LS    V N+++NMY K GD   A  VF+ +  K 
Sbjct: 152 LASCAAVECLGIGRKVHSFV-VKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKS 210

Query: 276 ------------------------------DKISWSTVISGLAMNGCGRQALQLFSLMII 305
                                         D +SW+ +ISG   +G  R+AL +FS M++
Sbjct: 211 TSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLM 270

Query: 306 NAVF-PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV----VDMYGR 360
           ++   PD  T  + +SAC++     + L L K +   + I  +   +  V    + MY +
Sbjct: 271 DSSSKPDKFTLASALSACANL----ENLKLGKQIHA-HIIRTEFDTFGAVGNALISMYSK 325

Query: 361 AGLLEEAEAFIRE 373
           +G +E A+  I +
Sbjct: 326 SGGVEIAQKIIEQ 338


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 161/454 (35%), Positives = 257/454 (56%), Gaps = 8/454 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L  C+       A  IH +VI++G   ++F+ N+L++ Y    ++  A ++F  +
Sbjct: 275 TVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQM 334

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHKLGK 128
              DVVSW +II+   +      A   F  + +   +P+  TLVS+ S  +    +K  +
Sbjct: 335 FLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSR 394

Query: 129 AIHAHSLRN--LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           ++H   +R   L E  +++ NA++D Y + G + S   +F  +P ++VVSW T+I GY +
Sbjct: 395 SVHGFIMRRGWLMEA-VVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQ 453

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
            G   EA+ V++ ME+ +E + N+ T V++L+A + + AL  G  +H ++  + +L +  
Sbjct: 454 NGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHL-IKTNLHLDV 512

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            VG  +I++Y KCG +  A+ +F  +  +  + W+ +IS   ++G G +AL+LF  M   
Sbjct: 513 FVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDE 572

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
            V PD VTFI+L+SACSH GLVD+G   F  M   Y I P ++HY C+VD+ GRAG LE 
Sbjct: 573 GVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQE-YGIKPSLKHYGCMVDLLGRAGFLEM 631

Query: 367 AEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAG 426
           A  FI++MP+  + S+WGALL ACRIH N E+       L      +VG + L+SN +A 
Sbjct: 632 AYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIYAN 691

Query: 427 ADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
             +WE  +K+R   R  GLKK  G S IEVN  +
Sbjct: 692 VGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRV 725



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/398 (28%), Positives = 204/398 (51%), Gaps = 20/398 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YTF   LKAC      +K   IH  V + G   D+F+  SL+H Y     +  A  +F
Sbjct: 174 DFYTFPPVLKACQTLVDGRK---IHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLF 230

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKP---NANTLVSVLSACSSLVSHK 125
           + + F D+ SW  +ISGL + G   +A+D+   + ++    ++ T+ S+L  C+ L    
Sbjct: 231 DDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDIS 290

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
               IH + +++  E  + + NA+++ Y + G+L     +F +M  R+VVSW ++I  Y 
Sbjct: 291 TATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYE 350

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +      A   F +M+     EP+  TLV++ S  +        + VH +I  R  L  +
Sbjct: 351 QNDDPVTARGFFFKMQ-LNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEA 409

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM-I 304
            ++GNAV++MY K G +  A +VFN++  KD +SW+T+ISG   NG   +A++++ +M  
Sbjct: 410 VVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEE 469

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY-----ACVVDMYG 359
              +  +  T++++++A +H G + QG      M     ++    H       C++D+YG
Sbjct: 470 CREIKLNQGTWVSILAAYAHVGALQQG------MRIHGHLIKTNLHLDVFVGTCLIDLYG 523

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
           + G L +A     ++P E+    W A+++   IH + E
Sbjct: 524 KCGRLVDAMCLFYQVPRESS-VPWNAIISCHGIHGHGE 560



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 178/376 (47%), Gaps = 32/376 (8%)

Query: 29  ALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           A  +HA ++  G +   FI   L++ Y ++ D+  +   F+ +   DV +W ++IS   +
Sbjct: 92  AKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVR 151

Query: 89  CGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
            G  +EAID F  +      + +  T   VL AC +LV    G+ IH    +   + ++ 
Sbjct: 152 NGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVD---GRKIHCWVFKLGFQWDVF 208

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           +  +++  Y R G +     LF  MP R++ SW  MI G  + G   +A+ V  EM + +
Sbjct: 209 VAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEM-RLE 267

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
               +  T+ ++L  C+ +  +S    +H Y+  ++ L     V NA+INMY K G++G 
Sbjct: 268 GINMDSVTVASILPVCAQLGDISTATLIHLYV-IKHGLEFELFVSNALINMYAKFGNLGD 326

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS- 323
           A +VF  +  +D +SW+++I+    N     A   F  M +N + PD +T ++L S  + 
Sbjct: 327 AQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQ 386

Query: 324 ----------HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIRE 373
                     HG ++ +G ++   +               V+DMY + G+++ A      
Sbjct: 387 SRDYKNSRSVHGFIMRRGWLMEAVVIG-----------NAVMDMYAKLGVIDSAHKVFNL 435

Query: 374 MPIEAEWSVWGALLNA 389
           +P++   S W  L++ 
Sbjct: 436 IPVKDVVS-WNTLISG 450



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 128/274 (46%), Gaps = 13/274 (4%)

Query: 105 KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGY 164
           +P  N  +   S   S     L K +HA  + +    +  +   +++ Y   G ++    
Sbjct: 70  QPAKNEEIDFNSLFDSCTKTLLAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRG 129

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224
            F ++ +++V +W +MI  Y   G  +EA+  F ++    + + +  T   VL AC +  
Sbjct: 130 TFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQT-- 187

Query: 225 ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVI 284
            L  G+ +H ++  +        V  ++I+MY + G VGIA  +F+ + ++D  SW+ +I
Sbjct: 188 -LVDGRKIHCWV-FKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMI 245

Query: 285 SGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 344
           SGL  NG   QAL +   M +  +  D VT  +++  C+  G +    ++      +Y I
Sbjct: 246 SGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIH-----LYVI 300

Query: 345 VPQMQHYACV----VDMYGRAGLLEEAEAFIREM 374
              ++    V    ++MY + G L +A+   ++M
Sbjct: 301 KHGLEFELFVSNALINMYAKFGNLGDAQKVFQQM 334



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 3/114 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T+   L A +     Q+ + IH H+I+     D+F+   L+  Y     +  A  +F
Sbjct: 476 NQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLF 535

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACS 119
             V     V W  IIS     G  ++A+ +F  +    VKP+  T +S+LSACS
Sbjct: 536 YQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACS 589


>gi|357113400|ref|XP_003558491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Brachypodium distachyon]
          Length = 393

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 162/388 (41%), Positives = 233/388 (60%), Gaps = 7/388 (1%)

Query: 75  DVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHS 134
           DVV WT  IS L++ G   EA+  F  +D  PNA TL SVL AC+ L S  LG+AIH   
Sbjct: 7   DVVRWTKRISALARSGRAAEAVAAFARMDAAPNALTLASVLPACARLRSLGLGRAIHGFW 66

Query: 135 LR--NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKE 192
           LR   +   N ILDNA+LD Y +CG+LAS   LF  MP+R+V SWTTM    A  G  ++
Sbjct: 67  LRRGGVPGANPILDNAVLDVYAKCGALASARSLFDGMPERDVFSWTTMAWALARSGCPQD 126

Query: 193 AVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN--LVGN 250
           AV++F+ M  + + EPNEAT+V+VL A +S  +L+ GK +HSY   R  LS S   +V N
Sbjct: 127 AVAMFRAMVLSDDGEPNEATVVSVLHAVASTGSLACGKLLHSYAIKR-GLSGSERVIVDN 185

Query: 251 AVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP 310
           A+I++Y KCG+  +A + F++L  KD ISW TV+  +A++G  ++A+QLFSLM+   V P
Sbjct: 186 ALIDVYGKCGEARLAFEAFDLLPDKDMISWGTVMRAMAVHGRCKEAMQLFSLMLRRGVRP 245

Query: 311 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAF 370
           D   F+ L+ AC H G+V Q +    AM  VY I P  +HY CV+D  GRAG  ++    
Sbjct: 246 DGAVFLGLLYACCHAGMVAQAMHFLGAMKRVYGIAPGREHYTCVLDACGRAGRFDDVGEI 305

Query: 371 IREMPIEAEWSVWGALLNACRIHRNDEMF-DRIRQDLVNKK-GVSVGTFALMSNTFAGAD 428
            R MP+E +    GA  +       D +  +++R+  ++ +     GT+AL+SN+ A A+
Sbjct: 306 FRRMPVEHDRKALGAYWSHASASSGDSVAGEQLREWFIDGRVDAGGGTYALVSNSLADAE 365

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           RW++   +R  +    + K   C+WIEV
Sbjct: 366 RWDNACAVRGRMAARRISKPVACTWIEV 393



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 115/223 (51%), Gaps = 9/223 (4%)

Query: 6   SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLH--DIFIQNSLLHFYVTVKDIFS 63
           ++ N  T    L AC+          IH   +  G +   +  + N++L  Y     + S
Sbjct: 36  AAPNALTLASVLPACARLRSLGLGRAIHGFWLRRGGVPGANPILDNAVLDVYAKCGALAS 95

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACS 119
           A  +F+ +   DV SWTT+   L++ G  ++A+ MF  +    D +PN  T+VSVL A +
Sbjct: 96  ARSLFDGMPERDVFSWTTMAWALARSGCPQDAVAMFRAMVLSDDGEPNEATVVSVLHAVA 155

Query: 120 SLVSHKLGKAIHAHSL-RNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           S  S   GK +H++++ R L+    +I+DNA++D Y +CG        F  +P ++++SW
Sbjct: 156 STGSLACGKLLHSYAIKRGLSGSERVIVDNALIDVYGKCGEARLAFEAFDLLPDKDMISW 215

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
            T++   A  G CKEA+ +F  M + +   P+ A  + +L AC
Sbjct: 216 GTVMRAMAVHGRCKEAMQLFSLMLR-RGVRPDGAVFLGLLYAC 257



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 121/232 (52%), Gaps = 18/232 (7%)

Query: 170 PKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 229
           P  +VV WT  I   A  G   EAV+ F  M    +A PN  TL +VL AC+ + +L  G
Sbjct: 4   PSGDVVRWTKRISALARSGRAAEAVAAFARM----DAAPNALTLASVLPACARLRSLGLG 59

Query: 230 KYVHSYISTRYDLSVSN-LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
           + +H +   R  +  +N ++ NAV+++Y KCG +  A  +F+ +  +D  SW+T+   LA
Sbjct: 60  RAIHGFWLRRGGVPGANPILDNAVLDVYAKCGALASARSLFDGMPERDVFSWTTMAWALA 119

Query: 289 MNGCGRQALQLFSLMII-NAVFPDDVTFIALISACSHGGLVDQGLILF-----KAMSTVY 342
            +GC + A+ +F  M++ +   P++ T ++++ A +  G +  G +L      + +S   
Sbjct: 120 RSGCPQDAVAMFRAMVLSDDGEPNEATVVSVLHAVASTGSLACGKLLHSYAIKRGLSGSE 179

Query: 343 EIVPQMQHYACVVDMYGRAGLLEEA-EAFIREMPIEAEWSVWGALLNACRIH 393
            ++        ++D+YG+ G    A EAF  ++  + +   WG ++ A  +H
Sbjct: 180 RVIVDNA----LIDVYGKCGEARLAFEAF--DLLPDKDMISWGTVMRAMAVH 225


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 157/420 (37%), Positives = 253/420 (60%), Gaps = 19/420 (4%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---C 100
           ++    +++  Y  VKD+ +A + F+ +    VVSW  ++SG ++ G  +EA+ +F    
Sbjct: 193 NVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMV 252

Query: 101 GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD----NAILDFYIRC 156
              ++P+  T V+V+SACSS    +    + A  +R L++  I L+     A+LD Y + 
Sbjct: 253 NAGIEPDETTWVTVISACSS----RGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKF 308

Query: 157 GSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNV 216
           G L S   LF  MP RNVV+W +MI GYA+ G    A+ +F+EM   K+  P+E T+V+V
Sbjct: 309 GDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSV 368

Query: 217 LSACSSISALSFGKYVHSYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           +SAC  + AL  G +V  +++  +  LS+S    NA+I MY +CG +  A +VF  +A +
Sbjct: 369 ISACGHLGALELGNWVVRFLTENQIKLSISG--HNAMIFMYSRCGSMEDAKRVFQEMATR 426

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILF 335
           D +S++T+ISG A +G G +A+ L S M    + PD VTFI +++ACSH GL+++G  +F
Sbjct: 427 DVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVF 486

Query: 336 KAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN 395
           +++       P + HYAC+VD+ GR G LE+A+  +  MP+E    V+G+LLNA RIH+ 
Sbjct: 487 ESIKD-----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQ 541

Query: 396 DEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
            E+ +     L   +  + G F L+SN +A A RW+D  +IR+ +++ G+KK TG SW+E
Sbjct: 542 VELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVE 601



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 105/351 (29%), Positives = 177/351 (50%), Gaps = 54/351 (15%)

Query: 33  HAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD----VVSWTTIISGLSK 88
           HAHV++ GH  D F++N+++  Y  +  I  A ++F+ +  PD    V  W  ++SG  K
Sbjct: 118 HAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEI--PDYERKVADWNAMVSGYWK 175

Query: 89  CGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148
                +A  +F   DV P                                 E N+I   A
Sbjct: 176 WESEGQAQWLF---DVMP---------------------------------ERNVITWTA 199

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
           ++  Y +   L +    F  MP+R+VVSW  M+ GYA+ G  +EA+ +F EM      EP
Sbjct: 200 MVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAG-IEP 258

Query: 209 NEATLVNVLSACSSIS----ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
           +E T V V+SACSS      A S  + +H     +  + ++  V  A+++MY K GD+  
Sbjct: 259 DETTWVTVISACSSRGDPCLAASLVRTLH-----QKRIQLNCFVRTALLDMYAKFGDLDS 313

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII-NAVFPDDVTFIALISACS 323
           A ++FN +  ++ ++W+++I+G A NG    A++LF  MI    + PD+VT +++ISAC 
Sbjct: 314 ARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACG 373

Query: 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
           H G ++ G  + + + T  +I   +  +  ++ MY R G +E+A+   +EM
Sbjct: 374 HLGALELGNWVVRFL-TENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEM 423



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 117/219 (53%), Gaps = 24/219 (10%)

Query: 26  HQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISG 85
           HQK +++           + F++ +LL  Y    D+ SA ++FN++   +VV+W ++I+G
Sbjct: 287 HQKRIQL-----------NCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAG 335

Query: 86  LSKCGFHKEAIDMF----CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNEN 141
            ++ G    AI++F        + P+  T+VSV+SAC  L + +LG  +    +R L EN
Sbjct: 336 YAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWV----VRFLTEN 391

Query: 142 NIILD----NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVF 197
            I L     NA++  Y RCGS+     +F +M  R+VVS+ T+I G+A  G   EA+++ 
Sbjct: 392 QIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLM 451

Query: 198 QEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
             M K    EP+  T + VL+ACS    L  G+ V   I
Sbjct: 452 STM-KEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESI 489



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 106/233 (45%), Gaps = 25/233 (10%)

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224
           LF      NV  +T+M+  Y+      + V ++++M+      P +A +  +L   +   
Sbjct: 56  LFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMYEQMQGCG-VRP-DAFVYPILIKSAGTG 113

Query: 225 ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA-YKDKIS-WST 282
            + F  +V      +        V NAVI+MY + G +G A +VF+ +  Y+ K++ W+ 
Sbjct: 114 GIGFHAHV-----LKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNA 168

Query: 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 342
           ++SG        QA  LF +M    V    +T+ A+++   +  + D      +A    +
Sbjct: 169 MVSGYWKWESEGQAQWLFDVMPERNV----ITWTAMVTG--YAKVKD-----LEAARRYF 217

Query: 343 EIVPQMQ--HYACVVDMYGRAGLLEEAEAFIREM---PIEAEWSVWGALLNAC 390
           + +P+     +  ++  Y + GL EEA     EM    IE + + W  +++AC
Sbjct: 218 DCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISAC 270


>gi|115468780|ref|NP_001057989.1| Os06g0597500 [Oryza sativa Japonica Group]
 gi|50725579|dbj|BAD33047.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113596029|dbj|BAF19903.1| Os06g0597500 [Oryza sativa Japonica Group]
 gi|125597760|gb|EAZ37540.1| hypothetical protein OsJ_21869 [Oryza sativa Japonica Group]
          Length = 530

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 158/484 (32%), Positives = 269/484 (55%), Gaps = 38/484 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +T+   L+A  +     +  + HA  ++ G   D +  +SL+  Y  +  +  A ++F
Sbjct: 48  DSFTYPFVLRAVGVLKLSVEGRKAHAAAVKTGFRWDAYTGSSLMEMYTMLGRVDIARKVF 107

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           + +    +V W  ++    +CG++  A+ +   ++   V P+  TLV+ ++ACS      
Sbjct: 108 DEMPSRALVLWNMMVRCYIRCGWYSAAVALSEQMERSGVTPDRVTLVTAVTACSRARDLS 167

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG+ IH + + N+   N+ + NA+LD Y +   L     LF +MP RN++SWT ++ GY 
Sbjct: 168 LGRRIHVY-MDNVFGFNLPVANALLDMYTKNDCLEEAVKLFEQMPARNIISWTILVSGYG 226

Query: 186 -------------------------------ERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
                                          + G  +EA+++F++M+  +  EP+  T+V
Sbjct: 227 LAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLFRDMQ-MQRVEPDRFTVV 285

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
            +L+ C+++ AL  G+++H Y   R  + +  ++G A+I+MY KCG +  +++VF  +  
Sbjct: 286 TLLTCCANLGALDQGEWIHQYAEQR-KMKIDAVLGTALIDMYSKCGHIEKSLEVFWRMQG 344

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           +D  +W+ +I GLA NG   +AL+LF  M  + V PD VTFI ++SAC HGGLVD+G   
Sbjct: 345 RDATAWTAIICGLATNGQAGRALELFQDMQRSKVKPDGVTFIGVLSACCHGGLVDEGRKQ 404

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAE-WSVWGALLNACRIH 393
           F AM  VY+I P+++HY+C+V++ GRAGLL+EAE  I ++PI  +   ++GALL AC+ H
Sbjct: 405 FHAMREVYQIEPRVEHYSCLVNLLGRAGLLDEAERLIGDVPINKDAMPLFGALLTACKAH 464

Query: 394 RNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSW 453
            N EM +R+ + +  +         LMSN +A A RWED  ++R ++    +KK  GCS 
Sbjct: 465 GNVEMSERLTKRICEQDSQITDVNLLMSNVYATASRWEDVIRVRGKMAHPTVKKNAGCSL 524

Query: 454 IEVN 457
           IEV 
Sbjct: 525 IEVK 528


>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 159/494 (32%), Positives = 278/494 (56%), Gaps = 56/494 (11%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +T     K+C+         ++H+ VI YG    +F QN+L++FY  + D+ SA  IF+ 
Sbjct: 97  FTIPPIFKSCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDG 156

Query: 71  VVFPDVVSWTTIISGLSKCG--------------------------------FHKEAI-- 96
           ++  D +++  +IS  S+ G                                +HK  I  
Sbjct: 157 ILVKDTIAYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIF 216

Query: 97  ----DMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNEN-----NIILDN 147
               D  C    +PN  TL +VLS C+ L   ++G  I     + LN+N     N+I+  
Sbjct: 217 QRMQDEMC----EPNEITLATVLSICAKLGDLEMGLRI-----KKLNDNKNLGSNMIVST 267

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           A+L+ Y++CG++     +F  M +R+VV+W+ MI GYA+ G   EA+ +F+ M K+ + +
Sbjct: 268 AMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENM-KSAQIK 326

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAI 266
           PN+ TLV+VLSAC+ + ++  G+ + SY+ +R    +SN+ V +A++ MY KCG++  A 
Sbjct: 327 PNDVTLVSVLSACAQLGSVETGERIGSYVESRG--LISNVYVASALLGMYSKCGNIIKAR 384

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
           Q+F+ L  +D ++W+++I GLA+NG    A+ L++ M    V P+++TF+ L++AC+H G
Sbjct: 385 QIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAG 444

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 386
            V+ GL  F++M + + I P ++H+AC+VD++ R+G L +A  FI  M +E    +WG L
Sbjct: 445 HVELGLEFFRSMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTL 504

Query: 387 LNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446
           L+A RIH N E+ +   + L+  +  + G + ++SN +A A RW++  K+R  ++   ++
Sbjct: 505 LSASRIHLNVELAELAGKKLLELEPDNSGNYVILSNIYASAGRWQEALKVRKLMKDKRVQ 564

Query: 447 KKTGCSWIEVNPSI 460
           K    SW+EV   +
Sbjct: 565 KAAAYSWVEVEDRV 578



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 111/433 (25%), Positives = 210/433 (48%), Gaps = 50/433 (11%)

Query: 20  CSLAHPHQKALEIHAHVI-EYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVS 78
           CSL  P  +  +I A +I +Y  L  +FI+  L   ++       A Q+F+ +  PD   
Sbjct: 11  CSL--PINQLKQIQALIIIKYLSLTPLFIRRLLNASFIQY-----ARQVFDQIPHPDQGV 63

Query: 79  WTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSL 135
             + I+  S+   + EA+  F  +   +V+    T+  +  +C+SL++  +GK +H+  +
Sbjct: 64  HCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKSCASLLAIDVGKQVHSLVI 123

Query: 136 RNLNENNIILDNAILDFYI-------------------------------RCGSLASCGY 164
           R    +++   NA+++FY                                R G + +   
Sbjct: 124 RYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAYNCLISAYSRSGEVLAARE 183

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224
           LF KM  R++VSW  MI  YA+ G   +   +FQ M+  +  EPNE TL  VLS C+ + 
Sbjct: 184 LFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQD-EMCEPNEITLATVLSICAKLG 242

Query: 225 ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVI 284
            L  G  +   ++   +L  + +V  A++ MYVKCG V     VF+ +A +D ++WS +I
Sbjct: 243 DLEMGLRIKK-LNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMI 301

Query: 285 SGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 344
           +G A NG   +AL+LF  M    + P+DVT ++++SAC+  G V+ G  +   + +   +
Sbjct: 302 AGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVES-RGL 360

Query: 345 VPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFD 400
           +  +   + ++ MY + G + +A     ++P + +   W +++    I+   E    +++
Sbjct: 361 ISNVYVASALLGMYSKCGNIIKARQIFDKLP-QRDNVTWNSMIMGLAINGFAEDAIALYN 419

Query: 401 RIRQDLVNKKGVS 413
           R+++  V    ++
Sbjct: 420 RMKEIEVKPNNIT 432



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 91/192 (47%), Gaps = 13/192 (6%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M S     N  T    L AC+     +    I ++V   G + ++++ ++LL  Y    +
Sbjct: 320 MKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGN 379

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSA 117
           I  A QIF+ +   D V+W ++I GL+  GF ++AI ++     I+VKPN  T V +++A
Sbjct: 380 IIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTA 439

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDN-----AILDFYIRCGSLASCGYLFVKMP-K 171
           C+     +LG        R++  ++ I  N      I+D + R G L        +M  +
Sbjct: 440 CTHAGHVELGLEF----FRSMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVE 495

Query: 172 RNVVSWTTMIGG 183
            NVV W T++  
Sbjct: 496 PNVVIWGTLLSA 507


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 152/455 (33%), Positives = 258/455 (56%), Gaps = 5/455 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N + FT  L A +L        +IH   ++ G L  + + N+L+  Y     +  A Q F
Sbjct: 208 NEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTF 267

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
            +    + ++W+ +I+G ++ G   +A+ +F  +    ++P+  T V V++ACS L +  
Sbjct: 268 ETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAW 327

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK +H + L+   E+ I +  A++D Y +C S+      F  + + ++V WT+MIGGY 
Sbjct: 328 EGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYV 387

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G  ++A+S++  ME  +   PNE T+ +VL ACSS++AL  GK +H+  + +Y   + 
Sbjct: 388 QNGENEDALSLYGRME-MEGILPNELTMASVLKACSSLAALEQGKQIHAR-TVKYGFGLE 445

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             +G+A+  MY KCG +     VF  +  +D ISW+ +ISGL+ NGCG++AL+LF  M +
Sbjct: 446 VPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQL 505

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
               PD VTF+ ++SACSH GLV++G   F+ M   + + P+++HYAC+VD+  RAG L+
Sbjct: 506 EGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLK 565

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EA  F     I+    +W  +L ACR +RN E+     + L+         + L+S+ ++
Sbjct: 566 EAIEFTESATIDHGMCLWRIILGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSSIYS 625

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
              RWED  ++R  ++  G+ K+ GCSWIE+   +
Sbjct: 626 ALGRWEDVERVRRMMKLRGVSKEPGCSWIELKSGV 660



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 197/370 (53%), Gaps = 24/370 (6%)

Query: 2   LSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDI 61
           ++ PS+ + +T   AL   +     QK   +HA +I+      ++I NSL++ Y   + +
Sbjct: 1   MTLPSNRSFFT---ALLQYTHNRSLQKGKALHAQIIKSSS-SCVYIANSLVNLYAKCQRL 56

Query: 62  FSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEA--IDMFCGI---DVKPNANTLVSVLS 116
             A  +F  +   DVVSW  II+G S+ G    +  +++F  +   +  PNA+T   V +
Sbjct: 57  REAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFT 116

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
           A S+LV    G+  HA +++  +  ++ + +++++ Y + G       +F  MP+RN VS
Sbjct: 117 AASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVS 176

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           W TMI GYA +    EA+ +F+ M + +E E NE    +VLSA +    ++ GK +H   
Sbjct: 177 WATMISGYASQKLAAEALGLFRLMRREEEGE-NEFVFTSVLSALTLPELVNNGKQIHCIA 235

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
                LS+ + VGNA++ MY KCG +  A+Q F   + K+ I+WS +I+G A +G   +A
Sbjct: 236 VKNGLLSIVS-VGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKA 294

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG------LILFKAMSTVYEIVPQMQH 350
           L+LFS M ++ + P + TF+ +I+ACS  G   +G      L+     S +Y +      
Sbjct: 295 LKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMT----- 349

Query: 351 YACVVDMYGR 360
              +VDMY +
Sbjct: 350 --ALVDMYAK 357



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 7/171 (4%)

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
           P+  +    L   +   +L  GK +H+ I       V   + N+++N+Y KC  +  A  
Sbjct: 4   PSNRSFFTALLQYTHNRSLQKGKALHAQIIKSSSSCV--YIANSLVNLYAKCQRLREAKF 61

Query: 268 VFNMLAYKDKISWSTVISGLAMNG--CGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
           VF  +  KD +SW+ +I+G + +G       ++LF  M      P+  TF  + +A S  
Sbjct: 62  VFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAAST- 120

Query: 326 GLVDQ-GLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP 375
            LVD  G  L  A++   +    +   + +++MY +AGL  EA      MP
Sbjct: 121 -LVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMP 170


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 153/451 (33%), Positives = 257/451 (56%), Gaps = 6/451 (1%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           +++ L  C+     ++   IHAH+       D+ + N +L+ Y     +  A  +F+ + 
Sbjct: 108 YSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMP 167

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLVSHKLGKA 129
             D+VSWT +ISG S+ G   EA+ +F     +  +PN  TL S+L A  +  S   G+ 
Sbjct: 168 TKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQ 227

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           +HA SL+   + N+ + +++LD Y R   +     +F  +  +NVVSW  +I G+A +G 
Sbjct: 228 LHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGE 287

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
            +  + +F +M + +  EP   T  +V +AC+S  +L  GK+VH+++       ++  +G
Sbjct: 288 GEHVMRLFLQMLR-QGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIA-YIG 345

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
           N +I+MY K G +  A +VF  L  +D +SW+++ISG A +G G +ALQLF  M+   V 
Sbjct: 346 NTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQ 405

Query: 310 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEA 369
           P+++TF+++++ACSH GL+D+G   F+ M   ++I  Q+ H+  VVD+ GRAG L EA  
Sbjct: 406 PNEITFLSVLTACSHSGLLDEGQYYFELMKK-HKIEAQVAHHVTVVDLLGRAGRLNEANK 464

Query: 370 FIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADR 429
           FI EMPI+   +VWGALL +CR+H+N ++     + +        G   L+SN +A A R
Sbjct: 465 FIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGR 524

Query: 430 WEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
             D  K+R  ++  G+KK+  CSW+E+   +
Sbjct: 525 LSDAAKVRKMMKESGVKKEPACSWVEIENEV 555



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 166/296 (56%), Gaps = 9/296 (3%)

Query: 100 CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSL 159
           CG  ++P       +L+ C+ L   K G+AIHAH   +  E++++L N IL+ Y +CGSL
Sbjct: 98  CG-SLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSL 156

Query: 160 ASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
                LF KMP +++VSWT +I GY++ G   EA+++F +M      +PNE TL ++L A
Sbjct: 157 EEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLG-FQPNEFTLSSLLKA 215

Query: 220 CSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS 279
             +  +   G+ +H++ S +Y   ++  VG+++++MY +   +  A  +FN LA K+ +S
Sbjct: 216 SGTGPSDHHGRQLHAF-SLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVS 274

Query: 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMS 339
           W+ +I+G A  G G   ++LF  M+     P   T+ ++ +AC+  G ++QG  +    +
Sbjct: 275 WNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVH---A 331

Query: 340 TVYEIVPQMQHYA--CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
            V +   Q   Y    ++DMY ++G +++A+   R + ++ +   W ++++    H
Sbjct: 332 HVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRL-VKQDIVSWNSIISGYAQH 386


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 148/453 (32%), Positives = 260/453 (57%), Gaps = 5/453 (1%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +TF   LKAC+ A   +  +++H+ V++ G  HD+    SLL  Y     +  AH++F+ 
Sbjct: 112 FTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDE 171

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLG 127
           +    VV+WT + SG +  G H+EAID+F     + VKP++  +V VLSAC  +     G
Sbjct: 172 IPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSG 231

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           + I  +      + N  +   +++ Y +CG +     +F  M ++++V+W+TMI GYA  
Sbjct: 232 EWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASN 291

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
            F KE + +F +M + +  +P++ ++V  LS+C+S+ AL  G++  S I  R++   +  
Sbjct: 292 SFPKEGIELFLQMLQ-ENLKPDQFSIVGFLSSCASLGALDLGEWGISLID-RHEFLTNLF 349

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           + NA+I+MY KCG +    +VF  +  KD +  +  ISGLA NG  + +  +F       
Sbjct: 350 MANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLG 409

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           + PD  TF+ L+  C H GL+  GL  F A+S VY +   ++HY C+VD++GRAG+L++A
Sbjct: 410 ISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDA 469

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
              I +MP+     VWGALL+ CR+ ++ ++ + + ++L+  +  + G +  +SN ++  
Sbjct: 470 YRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVG 529

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            RW++  ++RD + + G+KK  G SWIE+   +
Sbjct: 530 GRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKV 562



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 180/359 (50%), Gaps = 10/359 (2%)

Query: 19  ACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVS 78
           AC++ H  Q    IH  +I +   HD F+ N LL   +  +    ++ +F+   FP++  
Sbjct: 23  ACTVNHLKQ----IHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFL 78

Query: 79  WTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSL 135
           + ++I+G        E +D+F  I    +  +  T   VL AC+   S KLG  +H+  +
Sbjct: 79  YNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVV 138

Query: 136 RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVS 195
           +    +++    ++L  Y   G L     LF ++P R+VV+WT +  GY   G  +EA+ 
Sbjct: 139 KCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAID 198

Query: 196 VFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINM 255
           +F++M +    +P+   +V VLSAC  +  L  G+++  Y+    ++  ++ V   ++N+
Sbjct: 199 LFKKMVEMG-VKPDSYFIVQVLSACVHVGDLDSGEWIVKYME-EMEMQKNSFVRTTLVNL 256

Query: 256 YVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTF 315
           Y KCG +  A  VF+ +  KD ++WST+I G A N   ++ ++LF  M+   + PD  + 
Sbjct: 257 YAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSI 316

Query: 316 IALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
           +  +S+C+  G +D G      +   +E +  +     ++DMY + G +       +EM
Sbjct: 317 VGFLSSCASLGALDLGEWGISLIDR-HEFLTNLFMANALIDMYAKCGAMARGFEVFKEM 374


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 168/509 (33%), Positives = 263/509 (51%), Gaps = 58/509 (11%)

Query: 6   SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVT--VKDIFS 63
           +SY        +KAC      ++  ++HA +++ G  HD  I   +L    T   +DI  
Sbjct: 11  ASYYPRLDVPQIKACK---SMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGY 67

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKC-GFHKEAIDMFCGI----DVKPNANTLVSVLSAC 118
           A  +F+ +   +  +W T+I  L++    H +A+ +FC +     V+PN  T  SVL AC
Sbjct: 68  ALSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKAC 127

Query: 119 SSLVSHKLGKAIHA-----------------------------------------HSLRN 137
           + +     GK +H                                            +RN
Sbjct: 128 AVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRN 187

Query: 138 L------NENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
           L       E N++L N ++D Y R G+L +   LF +M +R+VVSW  MI GYA+ GF K
Sbjct: 188 LVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYK 247

Query: 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNA 251
           EA+ +F  M +  +  PN  TLV+VL A S +  L  GK+VH Y + +  + + +++G+A
Sbjct: 248 EAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLY-AEKNKIRIDDVLGSA 306

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD 311
           +++MY KCG +  AIQVF  L   + I+W+ VI GLAM+G         S M    + P 
Sbjct: 307 LVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPS 366

Query: 312 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFI 371
           DVT+IA++SACSH GLVD+G   F  M     + P+++HY C+VD+ GRAG LEEAE  I
Sbjct: 367 DVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELI 426

Query: 372 REMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWE 431
             MP++ +  +W ALL A ++H+N ++  R  + L+       G +  +SN +A +  W+
Sbjct: 427 LNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWD 486

Query: 432 DTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
               +R  ++ M ++K  GCSWIE++  I
Sbjct: 487 GVAAVRLMMKDMDIRKDPGCSWIEIDGVI 515


>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
          Length = 596

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 156/453 (34%), Positives = 259/453 (57%), Gaps = 7/453 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +TF   LKA           + HAH++++G   D F++NSL+  Y +      A ++F
Sbjct: 103 SRHTFPPLLKAV-FKLRDSNPFQFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLF 161

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           +     DVV+WT +I G  + G   EA+  F  +    V  N  T+VSVL A   +   +
Sbjct: 162 DGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVR 221

Query: 126 LGKAIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
            G+++H   L     + ++ + ++++D Y +C        +F +MP RNVV+WT +I GY
Sbjct: 222 FGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGY 281

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
            +     + + VF+EM K+  A PNE TL +VLSAC+ + AL  G+ VH Y+  +  + +
Sbjct: 282 VQSRCFDKGMLVFEEMLKSDVA-PNEKTLSSVLSACAHVGALHRGRRVHCYM-IKNSIEI 339

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           +   G  +I++YVKCG +  AI VF  L  K+  +W+ +I+G A +G  R A  LF  M+
Sbjct: 340 NTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTML 399

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
            + V P++VTF+A++SAC+HGGLV++G  LF +M   + +  +  HYAC+VD++GR GLL
Sbjct: 400 SSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMELKADHYACMVDLFGRKGLL 459

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           EEA+A I  MP+E    VWGAL  +C +H++ E+       ++  +    G + L++N +
Sbjct: 460 EEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLY 519

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           + +  W++  ++R +++   + K  G SWIEV 
Sbjct: 520 SESQNWDEVARVRKQMKDQQVVKSPGFSWIEVK 552



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 86/189 (45%), Gaps = 9/189 (4%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    + N  T +  L AC+      +   +H ++I+     +     +L+  YV    
Sbjct: 297 MLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGC 356

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           +  A  +F  +   +V +WT +I+G +  G+ ++A D+F  +    V PN  T ++VLSA
Sbjct: 357 LEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSA 416

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDN--AILDFYIRCGSLASCGYLFVKMPKR--N 173
           C+     + G+ +   S++      +  D+   ++D + R G L     L  +MP    N
Sbjct: 417 CAHGGLVEEGRRLFL-SMKGRFNMELKADHYACMVDLFGRKGLLEEAKALIERMPMEPTN 475

Query: 174 VVSWTTMIG 182
           VV W  + G
Sbjct: 476 VV-WGALFG 483


>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
          Length = 695

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 153/461 (33%), Positives = 265/461 (57%), Gaps = 36/461 (7%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           ++H HV+++G   ++++QN+L+  Y     +  A  +F+     DV SW  +ISG ++  
Sbjct: 156 KLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMK 215

Query: 91  FHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
            ++E+I++   ++   V P + TL+ VLSACS +    L K +H +      E ++ L+N
Sbjct: 216 EYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLEN 275

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK---------------- 191
           A+++ Y  CG +     +F  M  R+V+SWT+++ GY ERG  K                
Sbjct: 276 ALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRIS 335

Query: 192 ---------------EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
                          E++ +F+EM+      P+E T+V+VL+AC+ + +L  G+++ +YI
Sbjct: 336 WTIMIDGYLRAGCFNESLEIFREMQSAGMI-PDEFTMVSVLTACAHLGSLEIGEWIKTYI 394

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
             +  +    +VGNA+I+MY KCG    A +VF+ +  +DK +W+ ++ GLA NG G++A
Sbjct: 395 D-KNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEA 453

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
           +++F  M   ++ PDD+T++ ++SAC+H G+VDQ    F  M + + I P + HY C+VD
Sbjct: 454 IKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVD 513

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGT 416
           M GRAGL++EA   +R+MP+     VWGALL A R+H ++ M +   + ++  +  +   
Sbjct: 514 MLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAV 573

Query: 417 FALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +AL+ N +AG  RW+D  ++R +I  + +KK  G S IEVN
Sbjct: 574 YALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVN 614



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/418 (24%), Positives = 190/418 (45%), Gaps = 44/418 (10%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV--KDIFSA 64
           S ++  F   L  C      +   ++H+  I  G   +   Q  L  F+ +     +  A
Sbjct: 31  SNDYSRFISILGVCKTTDQFK---QLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYA 87

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS-S 120
           +++F  +  PDVV W  +I G SK     E + ++  +    V P+++T   +L+     
Sbjct: 88  YKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRD 147

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
             +   GK +H H ++    +N+ + NA++  Y  CG +     +F +  K +V SW  M
Sbjct: 148 GGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLM 207

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           I GY      +E++ +  EME+     P   TL+ VLSACS +      K VH Y+S   
Sbjct: 208 ISGYNRMKEYEESIELLVEMERNL-VSPTSVTLLLVLSACSKVKDKDLCKRVHEYVS-EC 265

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQV-------------------------------F 269
               S  + NA++N Y  CG++ IA+++                               F
Sbjct: 266 KTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYF 325

Query: 270 NMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVD 329
           + +  +D+ISW+ +I G    GC  ++L++F  M    + PD+ T +++++AC+H G ++
Sbjct: 326 DQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLE 385

Query: 330 QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
            G  + K      +I   +     ++DMY + G  E+A+    +M    +++ W A++
Sbjct: 386 IGEWI-KTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFT-WTAMV 441


>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 833

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 151/463 (32%), Positives = 270/463 (58%), Gaps = 5/463 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M  C    + +T    L + S+A  +     IH  +++      I IQ++LL  Y    D
Sbjct: 333 MKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGD 392

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
              A+ IF+++   DVV+W ++ISG  +   +KEA+D F  ++   VKP+++ + S++SA
Sbjct: 393 SNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISA 452

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C+ L    LG  IH   +++  + ++ + +++LD Y + G     G +F  MP +N+V+W
Sbjct: 453 CTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAW 512

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
            ++I  Y        ++++F ++ +  +  P+  +  +VL+A SS++AL  GK VH Y+ 
Sbjct: 513 NSIISCYCRNNLPDLSINLFSQVLRN-DLYPDSVSFTSVLAAISSVAALLKGKSVHGYL- 570

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            R  +     V N +I+MY+KCG +  A  +F  ++ K+ ++W+++I G   +G   +A+
Sbjct: 571 VRLWIPFDLQVENTLIDMYIKCGLLKYAQHIFERISEKNLVAWNSMIGGYGSHGECSKAI 630

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
           +LF  M  + + PDDVTF++L+S+C+H GL+++GL LF+ M   + I P+M+HY  +VD+
Sbjct: 631 ELFDEMRSSGIKPDDVTFLSLLSSCNHSGLIEEGLHLFEMMKMKFGIEPRMEHYVNIVDL 690

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTF 417
           YGRAG L +A +F++ MP+E + S+W +LL +C+IH N E+ + +   L+N +      +
Sbjct: 691 YGRAGCLGDAYSFVKNMPVEPDRSIWLSLLCSCKIHLNLELGEMVANKLLNMEPSKGSNY 750

Query: 418 ALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
             + N +  A+ W+ T  +R  ++  GLKK  GCSWIEV   +
Sbjct: 751 VQLLNLYGEAELWDRTANLRASMKEKGLKKTPGCSWIEVRNKV 793



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 206/409 (50%), Gaps = 11/409 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           +FT  L AC          ++H   I+ G   D ++  SLL  Y   + I SA ++FN V
Sbjct: 243 SFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEV 302

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
              ++  W  +IS     G+  +A+ ++  +    V  ++ T+++VL++ S    + LG+
Sbjct: 303 PDKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGR 362

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IH   ++   +++I + +A+L  Y + G       +F  M +R+VV+W ++I G+ +  
Sbjct: 363 LIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQNR 422

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
             KEA+  F+ ME     +P+   + +++SAC+ +  +  G  +H ++  +  L +   V
Sbjct: 423 KYKEALDFFRAME-ADLVKPDSDIMASIISACTGLEKVDLGCTIHGFV-IKSGLQLDVFV 480

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            +++++MY K G    A  +F+ +  K+ ++W+++IS    N     ++ LFS ++ N +
Sbjct: 481 ASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYCRNNLPDLSINLFSQVLRNDL 540

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
           +PD V+F ++++A S    + +G  +   +  ++ I   +Q    ++DMY + GLL+ A+
Sbjct: 541 YPDSVSFTSVLAAISSVAALLKGKSVHGYLVRLW-IPFDLQVENTLIDMYIKCGLLKYAQ 599

Query: 369 AFIREMPIEAEWSVWGALLNACRIH----RNDEMFDRIRQDLVNKKGVS 413
             I E   E     W +++     H    +  E+FD +R   +    V+
Sbjct: 600 -HIFERISEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVT 647



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 184/406 (45%), Gaps = 28/406 (6%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           P     +T+   LKAC+     Q    IH+ +I  G   D +I +SL++ YV       A
Sbjct: 48  PVYTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGLHSDQYITSSLINIYVKCGTFTDA 107

Query: 65  HQIFNS-----VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACS 119
            ++F+      V   DV  W +II G  + G  +E +  F  +                 
Sbjct: 108 VKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSS-------------- 153

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKR-NVVSWT 178
               +K GK IH++ +RN+   +  L+ A++D Y +CG      YLF K+  R N+V+W 
Sbjct: 154 ---GYKEGKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWN 210

Query: 179 TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST 238
            MIGG+ E G  + ++  +  + KT+  +   ++    LSAC     +SFGK VH   + 
Sbjct: 211 VMIGGFGENGLWENSLEYYL-LAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHC-DAI 268

Query: 239 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQ 298
           +        V  +++ MY KC  +  A +VFN +  K+   W+ +IS    NG    AL+
Sbjct: 269 KVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALR 328

Query: 299 LFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMY 358
           ++  M +  V  D  T + ++++ S  GL D G ++   +     +   +   + ++ MY
Sbjct: 329 IYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEI-VKRPLQSSITIQSALLTMY 387

Query: 359 GRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDRIR 403
            + G    A +    M  E +   WG++++  C+  +  E  D  R
Sbjct: 388 SKFGDSNYANSIFSTMK-ERDVVAWGSVISGFCQNRKYKEALDFFR 432



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 187/401 (46%), Gaps = 35/401 (8%)

Query: 26  HQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV-FPDVVSWTTIIS 84
           +++  +IH++++      D F++ +L+  Y        A  +F  +    ++V+W  +I 
Sbjct: 155 YKEGKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIG 214

Query: 85  GLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNEN 141
           G  + G  + +++ +      +VK  +++    LSAC        GK +H  +++   E+
Sbjct: 215 GFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFED 274

Query: 142 NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME 201
           +  +  ++L  Y +C  + S   +F ++P + +  W  +I  Y   G+  +A+ ++++M 
Sbjct: 275 DPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQM- 333

Query: 202 KTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGD 261
           K      +  T++NVL++ S       G+ +H+ I  R  L  S  + +A++ MY K GD
Sbjct: 334 KLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKR-PLQSSITIQSALLTMYSKFGD 392

Query: 262 VGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISA 321
              A  +F+ +  +D ++W +VISG   N   ++AL  F  M  + V PD     ++ISA
Sbjct: 393 SNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISA 452

Query: 322 CS-----------HGGLVDQGLIL--FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
           C+           HG ++  GL L  F A S              ++DMY + G  E A 
Sbjct: 453 CTGLEKVDLGCTIHGFVIKSGLQLDVFVASS--------------LLDMYSKFGFPERAG 498

Query: 369 AFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDRIRQDLVN 408
               +MP++     W ++++  CR +  D   +   Q L N
Sbjct: 499 NIFSDMPLK-NLVAWNSIISCYCRNNLPDLSINLFSQVLRN 538



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 139/303 (45%), Gaps = 32/303 (10%)

Query: 94  EAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFY 153
           EA+ ++    V     T  S+L AC+SL + + GK IH+  +     ++  + +++++ Y
Sbjct: 39  EALKLYTKSPVYTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGLHSDQYITSSLINIY 98

Query: 154 IRCGSLASCGYLFVKMPKR-----NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
           ++CG+      +F ++PK      +V  W ++I GY   G  +E +  F  M+ +   E 
Sbjct: 99  VKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSSGYKE- 157

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
                               GK +HSYI  R  L+    +  A+I+ Y KCG    A  +
Sbjct: 158 --------------------GKQIHSYI-VRNMLNFDPFLETALIDTYFKCGRPTEARYL 196

Query: 269 FNMLAYKDKI-SWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           F  L  +  I +W+ +I G   NG    +L+ + L     V     +F   +SAC  G  
Sbjct: 197 FKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEF 256

Query: 328 VDQG-LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 386
           V  G  +   A+   +E  P +  +  ++ MYG+  ++E AE    E+P + E  +W AL
Sbjct: 257 VSFGKQVHCDAIKVGFEDDPYV--HTSLLTMYGKCQMIESAEKVFNEVP-DKEIELWNAL 313

Query: 387 LNA 389
           ++A
Sbjct: 314 ISA 316


>gi|125555946|gb|EAZ01552.1| hypothetical protein OsI_23585 [Oryza sativa Indica Group]
          Length = 530

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 159/484 (32%), Positives = 268/484 (55%), Gaps = 38/484 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +T+   L+A  +     +  + HA  I+ G   D +  +SL+  Y  +  +  A ++F
Sbjct: 48  DSFTYPFVLRAVGVLKLSVEGRKAHAAAIKTGFRWDAYTGSSLMEMYTMLGRVDIARKVF 107

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           + +    +V W  ++    +CG +  A+ +   ++   V P+  TLV+ ++ACS      
Sbjct: 108 DEMPSRALVLWNMMVRCYIRCGRYSAAVALSEQMERSGVTPDRVTLVTAVTACSRARDLS 167

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG+ IH + + N+   N+ + NA+LD Y +   L     LF +MP RN++SWT ++ GY 
Sbjct: 168 LGRRIHVY-MDNVFGFNLPVANALLDMYTKNDCLEEAVKLFEQMPARNIISWTILVSGYG 226

Query: 186 -------------------------------ERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
                                          + G  +EA+++F++M+  +  EP+  T+V
Sbjct: 227 LAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLFRDMQ-MQRVEPDRFTVV 285

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
            +L+ C+++ AL  G+++H Y   R  + +  ++G A+I+MY KCG +  +++VF  +  
Sbjct: 286 TLLTCCANLGALDQGEWIHQYAEQR-KMKIDAVLGTALIDMYSKCGHIEKSLEVFWRMQG 344

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           +D  +W+ +I GLA NG   +AL+LF  M  + V PD VTFI ++SAC HGGLVD+G   
Sbjct: 345 RDATAWTAIICGLATNGQAGRALELFQDMQRSKVKPDGVTFIGVLSACCHGGLVDEGRKQ 404

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAE-WSVWGALLNACRIH 393
           F AM  VY+I P+++HY+C+V++ GRAGLL+EAE  I ++PI  +   ++GALL AC+ H
Sbjct: 405 FHAMREVYQIEPRVEHYSCLVNLLGRAGLLDEAERLIGDVPINKDAMPLFGALLTACKAH 464

Query: 394 RNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSW 453
            N EM +R+ + +  +         LMSN +A A RWED  ++R ++    +KK  GCS 
Sbjct: 465 GNVEMSERLTKRICEQDSQITDVNLLMSNVYATASRWEDVIRVRGKMAHPTVKKTAGCSL 524

Query: 454 IEVN 457
           IEV 
Sbjct: 525 IEVK 528


>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 158/456 (34%), Positives = 262/456 (57%), Gaps = 13/456 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVT--VKDIFSAHQ 66
           +++T+   LKAC+          IH HV +YG   D+F+ NSL+  Y    +  +  A +
Sbjct: 120 DNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMK 179

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKL 126
           +F  +   D+VSW ++I GL K G    A  +F  +  + +A +  ++L         K 
Sbjct: 180 LFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEM-AERDAVSWNTILDGYV-----KA 233

Query: 127 GKAIHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           G+   A +L   + E N++  + ++  Y + G +     LF KMP +N+V+WT +I G+A
Sbjct: 234 GEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFA 293

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST-RYDLSV 244
           E+G  KEA +++ +ME     +P++ TL+++L+AC+    L  GK VH+ I   R   SV
Sbjct: 294 EKGLAKEATTLYNQMEAAG-LKPDDGTLISILAACAESGLLVLGKKVHASIKKIRIKCSV 352

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           +  V NA+++MY KCG V  A+ +FN ++ +D +SW+ ++ GLAM+G G +A+QLFS M 
Sbjct: 353 N--VSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQ 410

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
                PD VT IA++ AC+H G VDQGL  F +M   + IVP ++HY C++D+ GR G L
Sbjct: 411 QEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDLLGRGGRL 470

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           EEA   ++ MP+E    +WG LL ACR+H    + +++   L+  +    G ++++SN F
Sbjct: 471 EEAFRLVQSMPMEPNDVIWGTLLGACRVHNAVPLAEKVLDRLITLEQSDPGNYSMLSNIF 530

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           A A  W     +R +++  G++K +G S IE++  +
Sbjct: 531 AAAGDWNSVANMRLQMKSTGVQKPSGASSIELDDEV 566



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 185/387 (47%), Gaps = 27/387 (6%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           E+HA +I+    +D+++   L+  +     +  A  +FN +  P+V  + T+I    +  
Sbjct: 41  EVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNS 100

Query: 91  FHKEAIDMFCGIDVKPNA-----NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
              +A   F   D++ N       T   +L AC+        + IH H  +     ++ +
Sbjct: 101 QSLKAFATF--FDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFV 158

Query: 146 DNAILDFYIRCGSLASCGY---LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202
            N+++D Y +CG L    Y   LF++M ++++VSW +MIGG  + G    A  +F EM  
Sbjct: 159 PNSLIDSYSKCG-LLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEM-- 215

Query: 203 TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 262
              AE +  +   +L        +S    +   +  R  +S S +V       Y K GD+
Sbjct: 216 ---AERDAVSWNTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSG-----YCKTGDM 267

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
            +A  +F+ + +K+ ++W+ +ISG A  G  ++A  L++ M    + PDD T I++++AC
Sbjct: 268 EMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAAC 327

Query: 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
           +  GL+  G  +  ++  +  I   +     +VDMY + G +++A +   EM +  +   
Sbjct: 328 AESGLLVLGKKVHASIKKI-RIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMR-DLVS 385

Query: 383 WGALLNACRIHRNDE----MFDRIRQD 405
           W  +L    +H + E    +F +++Q+
Sbjct: 386 WNCMLQGLAMHGHGEKAIQLFSKMQQE 412



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 118/259 (45%), Gaps = 15/259 (5%)

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           K +HA  ++    N++ +   ++  +  C  +     +F ++   NV  + T+I  + + 
Sbjct: 40  KEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQN 99

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
               +A + F +M+K      N  T   +L AC+    L   + +H ++  +Y       
Sbjct: 100 SQSLKAFATFFDMQKNGLFADN-FTYPFLLKACNGKGWLPTVQMIHCHVE-KYGFFGDLF 157

Query: 248 VGNAVINMYVKCGDVGI--AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
           V N++I+ Y KCG +G+  A+++F  +  KD +SW+++I GL   G   +A +LF  M  
Sbjct: 158 VPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMAE 217

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
                D V++  ++      G + Q   LF+ M     +      ++ +V  Y + G +E
Sbjct: 218 R----DAVSWNTILDGYVKAGEMSQAFNLFEKMPERNVV-----SWSTMVSGYCKTGDME 268

Query: 366 EAEAFIREMPIE--AEWSV 382
            A     +MP +    W++
Sbjct: 269 MARMLFDKMPFKNLVTWTI 287



 Score = 42.7 bits (99), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 79/190 (41%), Gaps = 27/190 (14%)

Query: 230 KYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAM 289
           K VH+ I  R +L     V   +I+ +  C  + +A+ VFN +   +   ++T+I     
Sbjct: 40  KEVHAQIIKR-NLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQ 98

Query: 290 NGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQ 349
           N    +A   F  M  N +F D+ T+  L+ AC+  G           + TV  I   ++
Sbjct: 99  NSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGW----------LPTVQMIHCHVE 148

Query: 350 HYA---------CVVDMYGRAGLL--EEAEAFIREMPIEAEWSVW----GALLNACRIHR 394
            Y           ++D Y + GLL    A     EM  E +   W    G L+ A  + R
Sbjct: 149 KYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMG-EKDLVSWNSMIGGLVKAGDLGR 207

Query: 395 NDEMFDRIRQ 404
             ++FD + +
Sbjct: 208 ARKLFDEMAE 217


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 170/469 (36%), Positives = 253/469 (53%), Gaps = 52/469 (11%)

Query: 38  EYGHLHDIFIQNSLLHFYVTVKDI--FSAHQ-----------IFNSVVFPDVVSWTTIIS 84
           ++   H   I N L H   +++ I  FSA             +  +   P V  + T I 
Sbjct: 3   QFKEAHTQLIINGLTHPPPSLRPIISFSALDPSGDIDYALLLLLRTSTPPTVFLFNTTIR 62

Query: 85  GLSKC---GFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNL 138
           G S+    G    ++ +F  + V    PN  T   +   CS+ V+  LG+  H   ++N 
Sbjct: 63  GFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHGMVIKNS 122

Query: 139 NENNIILDNAILDFYIRCGSLASCGY-------------------------------LFV 167
            E ++ + N+I+ FY  CG L    +                               LF 
Sbjct: 123 FEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILEALSLFS 182

Query: 168 KMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 227
           KM +RN +SW  MI GYA+ G  KEA+++F+EM+   + EPN A LV+VLSACS + AL 
Sbjct: 183 KMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQ-EPNSAILVSVLSACSQLGALD 241

Query: 228 FGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGL 287
            G +VH YI  +  + V +++  A+I+MY KCG + +A+Q F+    +D  +++  ISGL
Sbjct: 242 HGCWVHCYIGKKC-VRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGL 300

Query: 288 AMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 347
           AMNGC  +ALQLF  M    + PD V++IA++ ACSH G V++G   F +MS V+ I P+
Sbjct: 301 AMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHGIRPE 360

Query: 348 MQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLV 407
           + HYAC+VD+ GRAGLLEEAE F+  MPI+ +  +WGALL ACR++ N EM  R+   LV
Sbjct: 361 LDHYACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAEMGQRVGSLLV 420

Query: 408 NKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
                  G + L+SN +A + + ED  ++R  +RR  + +  GCS IEV
Sbjct: 421 ESDQNHDGRYILLSNIYAESMKGEDAEQVRKTMRRRKVDRVPGCSLIEV 469



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 149/331 (45%), Gaps = 36/331 (10%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N++TFT   + CS         + H  VI+     D+F++NS++ FY     +  A  +F
Sbjct: 91  NNFTFTFLFQGCSNCVAFDLGRQFHGMVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVF 150

Query: 69  NSVVFPDVVSWTT-------------------------------IISGLSKCGFHKEAID 97
           +     DVVSW +                               +ISG ++ G  KEA+ 
Sbjct: 151 DESSELDVVSWNSMIDGCIRNGNILEALSLFSKMTERNDISWNMMISGYAQNGQPKEALA 210

Query: 98  MFCG---IDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
           +F     +D +PN+  LVSVLSACS L +   G  +H +  +     + IL  A++D Y 
Sbjct: 211 LFREMQMLDQEPNSAILVSVLSACSQLGALDHGCWVHCYIGKKCVRVDSILSAALIDMYA 270

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           +CGS+      F    KR+V ++T  I G A  G  +EA+ +F++M K +   P+  + +
Sbjct: 271 KCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQLFEQM-KGEGISPDGVSYI 329

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLA 273
            VL ACS    +  G +  + +S  + +         ++++  + G +  A + V +M  
Sbjct: 330 AVLCACSHAGWVEKGFHYFASMSDVHGIRPELDHYACMVDLLGRAGLLEEAEKFVASMPI 389

Query: 274 YKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
             D + W  ++    + G      ++ SL++
Sbjct: 390 KPDNVIWGALLGACRVYGNAEMGQRVGSLLV 420


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 165/440 (37%), Positives = 258/440 (58%), Gaps = 16/440 (3%)

Query: 29  ALEIHAHVIEYGHLHDIFIQNSLLHFY---VTVKDIFSAHQIFNSVVFPDVVSWTTIISG 85
            +E+HA+ I++G   ++ I NSL+  Y     VK + SA   F  +   D++SWTTII+G
Sbjct: 371 GMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSA---FEYMPEKDLISWTTIIAG 427

Query: 86  LSKCGFHKEAIDMFCGI-----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNE 140
            ++   H +A+++   +     DV P    + S+L ACS L S KL K IH + L+    
Sbjct: 428 YAQNECHLDALNLLRKVQLEKMDVDPM--MIGSILLACSGLKSEKLIKEIHGYVLKG-GL 484

Query: 141 NNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEM 200
            +I++ NAI++ Y     +    ++F  +  +++VSWT+MI      G   EA+ +F  +
Sbjct: 485 ADILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSL 544

Query: 201 EKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCG 260
            +T   EP+  TLV+VL A +++S+L  GK +H ++  R    +  L+ N++++MY +CG
Sbjct: 545 IETN-IEPDLITLVSVLYAAAALSSLKKGKEIHGFL-IRKGFFLEGLIANSLVDMYARCG 602

Query: 261 DVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALIS 320
            +  A  +FN +  +D I W+++I+   M+GCG+ A+ LFS M    V PD +TF+AL+ 
Sbjct: 603 TMENARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLY 662

Query: 321 ACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 380
           ACSH GLV +G   F+ M   Y++ P  +HYAC+VD+  R+  LEEA  F+R MPIE   
Sbjct: 663 ACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSA 722

Query: 381 SVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEI 440
            VW ALL ACRIH N+++ +   + L+     + G + L+SNTFA   RW D  ++R  +
Sbjct: 723 EVWCALLGACRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIM 782

Query: 441 RRMGLKKKTGCSWIEVNPSI 460
           +   LKKK GCSWIEV   I
Sbjct: 783 KGNKLKKKPGCSWIEVENKI 802



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 174/332 (52%), Gaps = 9/332 (2%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S + +TF   LKAC      +   EIH   ++ G+   +F+ N+L+  Y    D+  A  
Sbjct: 145 SLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARV 204

Query: 67  IFNSVVFP--DVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSL 121
           +F+S +    D VSW +IIS     G   EA+ +F     + V+ N  T VS L AC   
Sbjct: 205 LFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGP 264

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
              K+G+ IHA  L++ +  ++ + NA++  Y  CG +     +F  M  ++ VSW T++
Sbjct: 265 TFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLL 324

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
            G  +     +A++ FQ+M+ + + +P++ +++N+++A    + L  G  VH+Y + ++ 
Sbjct: 325 SGMVQNDMYSDAINHFQDMQDSGQ-KPDQVSVLNMIAASGRSANLLAGMEVHAY-AIKHG 382

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
           +  +  +GN++I+MY KC  V      F  +  KD ISW+T+I+G A N C   AL L  
Sbjct: 383 IDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLR 442

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLI 333
            + +  +  D +   +++ ACS  GL  + LI
Sbjct: 443 KVQLEKMDVDPMMIGSILLACS--GLKSEKLI 472



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 183/381 (48%), Gaps = 10/381 (2%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIE-YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           ++QAL+ C+      +  ++HAH ++   +L  +F+    +H Y      + A ++F+ +
Sbjct: 49  YSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKM 108

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLVSHKLGK 128
               + +W  +I      G + EAI+++     + V  +A T   VL AC +    +LG 
Sbjct: 109 SERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGC 168

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK--MPKRNVVSWTTMIGGYAE 186
            IH  +++      + + NA++  Y +CG L     LF    M K + VSW ++I  +  
Sbjct: 169 EIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVG 228

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
            G   EA+S+F+ M++    E N  T V+ L AC   + +  G+ +H+ I  + +     
Sbjct: 229 EGESLEALSLFRRMQEVG-VESNTYTFVSALQACEGPTFIKIGRGIHAVI-LKSNHFTDV 286

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            V NA+I MY  CG +  A +VF  + +KD +SW+T++SG+  N     A+  F  M  +
Sbjct: 287 YVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDS 346

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
              PD V+ + +I+A      +  G+ +  A +  + I   M     ++DMYG+   ++ 
Sbjct: 347 GQKPDQVSVLNMIAASGRSANLLAGMEV-HAYAIKHGIDSNMHIGNSLIDMYGKCCCVKY 405

Query: 367 AEAFIREMPIEAEWSVWGALL 387
             +    MP E +   W  ++
Sbjct: 406 MGSAFEYMP-EKDLISWTTII 425



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 142/312 (45%), Gaps = 23/312 (7%)

Query: 106 PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNE-NNIILDNAILDFYIRCGSLASCGY 164
           P        L  C+S  +   G+ +HAH L+  N  +++ LD   +  Y +CGS      
Sbjct: 44  PLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVK 103

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224
           +F KM +R + +W  MIG     G   EA+ +++EM +      +  T   VL AC +  
Sbjct: 104 VFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEM-RVLGVSLDAFTFPCVLKACGAFK 162

Query: 225 ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN--MLAYKDKISWST 282
               G  +H  ++ +        V NA+I MY KCGD+G A  +F+  ++   D +SW++
Sbjct: 163 ERRLGCEIHG-VAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNS 221

Query: 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 342
           +IS     G   +AL LF  M    V  +  TF++ + AC       +G    K    ++
Sbjct: 222 IISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQAC-------EGPTFIKIGRGIH 274

Query: 343 EIVPQMQHYACV------VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND 396
            ++ +  H+  V      + MY   G +E+AE   + M  + +   W  LL+   + +ND
Sbjct: 275 AVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFK-DCVSWNTLLSG--MVQND 331

Query: 397 EMFDRIR--QDL 406
              D I   QD+
Sbjct: 332 MYSDAINHFQDM 343



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 7/113 (6%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L A +     +K  EIH  +I  G   +  I NSL+  Y     + +A  IFN V
Sbjct: 555 TLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYV 614

Query: 72  VFPDVVSWTTII--SGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 119
              D++ WT++I  +G+  CG  K+AID+F  +   +V P+  T +++L ACS
Sbjct: 615 KQRDLILWTSMINANGMHGCG--KDAIDLFSKMTDENVLPDHITFLALLYACS 665


>gi|218188593|gb|EEC71020.1| hypothetical protein OsI_02714 [Oryza sativa Indica Group]
          Length = 825

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 154/453 (33%), Positives = 256/453 (56%), Gaps = 8/453 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YTF       S          IHAH+++ G      + ++++  YV    +  A   F
Sbjct: 362 NQYTFVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQDAILAF 421

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           + +  PD+ SW T++SG       +  + +F  +    V  N  T V +L  C+SL+  +
Sbjct: 422 DLMQGPDIASWNTLLSGFYSGNNCEHGLRIFKELICEGVLANKYTYVGILRCCTSLMDLR 481

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G  +HA  L++  + +  +   +LD Y++ G   +   +F ++ +R+V SWT ++  YA
Sbjct: 482 FGCQVHACVLKSGFQGDYDVSKMLLDMYVQAGCFTNARLVFDRLKERDVFSWTVVMSTYA 541

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSV 244
           +    ++A+  F+ M +  +  PN+ATL   LS CS ++ L  G  +HSY I + ++   
Sbjct: 542 KTDEGEKAIECFRSMLRENK-RPNDATLATSLSVCSDLACLGSGLQLHSYTIKSGWN--- 597

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           S++V +A+++MYVKCG++  A  +F+     D + W+T+I G A +G G +AL+ F  MI
Sbjct: 598 SSVVSSALVDMYVKCGNLADAEMLFDESDTHDLVEWNTIICGYAQHGHGYKALEAFQEMI 657

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
                PD++TF+ ++SACSH GL+D+G   FK +S+VY I P ++HYAC+VD+  +AG L
Sbjct: 658 DEGNVPDEITFVGVLSACSHAGLLDEGRRYFKLLSSVYGITPTLEHYACMVDILAKAGKL 717

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
            EAE+ I EMP+  + S+W  +L ACR+H N E+ +R  + L   +   + +  L+SN +
Sbjct: 718 AEAESLINEMPLTPDASLWKTILGACRMHGNIEIAERAAEKLFESQPDDISSCILLSNIY 777

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           A   RW D  K+R  +   G+KK+ GCSWIE+N
Sbjct: 778 ADLKRWNDVAKLRSMLVDRGVKKEPGCSWIEIN 810



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 168/371 (45%), Gaps = 13/371 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YT    LK C      +    +H  VI+ G   D  + N L+  Y        A+++F
Sbjct: 261 SKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLNNCLIEMYSKCLSAEDAYEVF 320

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHK 125
             +  PDVV  + +IS   +     EA D+F     + VKPN  T V +    S      
Sbjct: 321 ARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVKPNQYTFVGLAIVASRTGDVN 380

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           L ++IHAH +++       + +AI+  Y++ G++      F  M   ++ SW T++ G+ 
Sbjct: 381 LCRSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQDAILAFDLMQGPDIASWNTLLSGFY 440

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI---STRYDL 242
               C+  + +F+E+   +    N+ T V +L  C+S+  L FG  VH+ +     + D 
Sbjct: 441 SGNNCEHGLRIFKEL-ICEGVLANKYTYVGILRCCTSLMDLRFGCQVHACVLKSGFQGDY 499

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
            VS +    +++MYV+ G    A  VF+ L  +D  SW+ V+S  A    G +A++ F  
Sbjct: 500 DVSKM----LLDMYVQAGCFTNARLVFDRLKERDVFSWTVVMSTYAKTDEGEKAIECFRS 555

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
           M+     P+D T    +S CS    +  GL L     T+          + +VDMY + G
Sbjct: 556 MLRENKRPNDATLATSLSVCSDLACLGSGLQLHS--YTIKSGWNSSVVSSALVDMYVKCG 613

Query: 363 LLEEAEAFIRE 373
            L +AE    E
Sbjct: 614 NLADAEMLFDE 624



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 152/323 (47%), Gaps = 9/323 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           ++  AL+ C+ +   ++   +HA ++  G   D F+ +SLL+ Y     +  A  +F+ +
Sbjct: 62  SYAAALQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCGRLADARSVFDGM 121

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLG- 127
              DVV+WT ++S ++  G    A+ +F  +    V PN   L + L AC+  V   LG 
Sbjct: 122 PHRDVVAWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKACT--VGSDLGF 179

Query: 128 -KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
              +HA +++     +  + +++++ Y+ CG +       +  P R+ VSW  ++  YA 
Sbjct: 180 TPQVHAQAVKLEGLFDPYVSSSLVEAYVSCGEVDVAERALLDSPVRSDVSWNALLNEYAR 239

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
            G   + + VF ++ ++ + E ++ TL  VL  C  +     G+ VH  +  R  L    
Sbjct: 240 DGDYAKVMLVFDKLVESGD-EISKYTLPTVLKCCMELGLAKSGQAVHGLVIKR-GLETDR 297

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
           ++ N +I MY KC     A +VF  +   D +  S +IS    +    +A  +F  M   
Sbjct: 298 VLNNCLIEMYSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDM 357

Query: 307 AVFPDDVTFIALISACSHGGLVD 329
            V P+  TF+ L    S  G V+
Sbjct: 358 GVKPNQYTFVGLAIVASRTGDVN 380



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 159/321 (49%), Gaps = 11/321 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ-I 67
           N +    ALKAC++        ++HA  ++   L D ++ +SL+  YV+  ++  A + +
Sbjct: 160 NGFALAAALKACTVGSDLGFTPQVHAQAVKLEGLFDPYVSSSLVEAYVSCGEVDVAERAL 219

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLV 122
            +S V  D VSW  +++  ++ G + + + +F      G ++  +  TL +VL  C  L 
Sbjct: 220 LDSPVRSD-VSWNALLNEYARDGDYAKVMLVFDKLVESGDEI--SKYTLPTVLKCCMELG 276

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
             K G+A+H   ++   E + +L+N +++ Y +C S      +F ++ + +VV  + MI 
Sbjct: 277 LAKSGQAVHGLVIKRGLETDRVLNNCLIEMYSKCLSAEDAYEVFARIDEPDVVHCSLMIS 336

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
            +       EA  +F +M      +PN+ T V +    S    ++  + +H++I  +   
Sbjct: 337 CFDRHDMAPEAFDIFMQMSDMG-VKPNQYTFVGLAIVASRTGDVNLCRSIHAHI-VKSGF 394

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
           S +  V +A++ MYVK G V  AI  F+++   D  SW+T++SG          L++F  
Sbjct: 395 SRTKGVCDAIVGMYVKTGAVQDAILAFDLMQGPDIASWNTLLSGFYSGNNCEHGLRIFKE 454

Query: 303 MIINAVFPDDVTFIALISACS 323
           +I   V  +  T++ ++  C+
Sbjct: 455 LICEGVLANKYTYVGILRCCT 475



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 35/358 (9%)

Query: 109 NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168
            +  + L  C++  + + GKA+HA  LR+    +  L +++L+ Y +CG LA    +F  
Sbjct: 61  RSYAAALQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCGRLADARSVFDG 120

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           MP R+VV+WT M+      G    A+ +F EM + +   PN   L   L AC+  S L F
Sbjct: 121 MPHRDVVAWTAMVSAITAAGDAGAALRLFAEMSE-EGVVPNGFALAAALKACTVGSDLGF 179

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
              VH+  + + +      V ++++  YV CG+V +A +       +  +SW+ +++  A
Sbjct: 180 TPQVHAQ-AVKLEGLFDPYVSSSLVEAYVSCGEVDVAERALLDSPVRSDVSWNALLNEYA 238

Query: 289 MNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVD-----QGLILFKAMSTVYE 343
            +G   + + +F  ++ +       T   ++  C   GL        GL++ + + T   
Sbjct: 239 RDGDYAKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRV 298

Query: 344 IVPQMQHYACVVDMYGRAGLLEEA-EAFIREMPIEAEWSVWGALLNACRIHRND---EMF 399
           +        C+++MY +    E+A E F R   I+    V  +L+ +C   R+D   E F
Sbjct: 299 L------NNCLIEMYSKCLSAEDAYEVFAR---IDEPDVVHCSLMISC-FDRHDMAPEAF 348

Query: 400 DRIRQDLVNKKGVSVGTFALMSNTFAG----ADRWEDTNKIRD---EIRRMGLKKKTG 450
           D   Q  ++  GV    +     TF G    A R  D N  R     I + G  +  G
Sbjct: 349 DIFMQ--MSDMGVKPNQY-----TFVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTKG 399


>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15930
 gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 153/461 (33%), Positives = 265/461 (57%), Gaps = 36/461 (7%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           ++H HV+++G   ++++QN+L+  Y     +  A  +F+     DV SW  +ISG ++  
Sbjct: 156 KLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMK 215

Query: 91  FHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
            ++E+I++   ++   V P + TL+ VLSACS +    L K +H +      E ++ L+N
Sbjct: 216 EYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLEN 275

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK---------------- 191
           A+++ Y  CG +     +F  M  R+V+SWT+++ GY ERG  K                
Sbjct: 276 ALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRIS 335

Query: 192 ---------------EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
                          E++ +F+EM+      P+E T+V+VL+AC+ + +L  G+++ +YI
Sbjct: 336 WTIMIDGYLRAGCFNESLEIFREMQSAGMI-PDEFTMVSVLTACAHLGSLEIGEWIKTYI 394

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
             +  +    +VGNA+I+MY KCG    A +VF+ +  +DK +W+ ++ GLA NG G++A
Sbjct: 395 D-KNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEA 453

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
           +++F  M   ++ PDD+T++ ++SAC+H G+VDQ    F  M + + I P + HY C+VD
Sbjct: 454 IKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVD 513

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGT 416
           M GRAGL++EA   +R+MP+     VWGALL A R+H ++ M +   + ++  +  +   
Sbjct: 514 MLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAV 573

Query: 417 FALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +AL+ N +AG  RW+D  ++R +I  + +KK  G S IEVN
Sbjct: 574 YALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVN 614



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/418 (24%), Positives = 190/418 (45%), Gaps = 44/418 (10%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV--KDIFSA 64
           S ++  F   L  C      +   ++H+  I  G   +   Q  L  F+ +     +  A
Sbjct: 31  SNDYSRFISILGVCKTTDQFK---QLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYA 87

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS-S 120
           +++F  +  PDVV W  +I G SK     E + ++  +    V P+++T   +L+     
Sbjct: 88  YKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRD 147

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
             +   GK +H H ++    +N+ + NA++  Y  CG +     +F +  K +V SW  M
Sbjct: 148 GGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLM 207

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           I GY      +E++ +  EME+     P   TL+ VLSACS +      K VH Y+S   
Sbjct: 208 ISGYNRMKEYEESIELLVEMERNL-VSPTSVTLLLVLSACSKVKDKDLCKRVHEYVS-EC 265

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQV-------------------------------F 269
               S  + NA++N Y  CG++ IA+++                               F
Sbjct: 266 KTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYF 325

Query: 270 NMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVD 329
           + +  +D+ISW+ +I G    GC  ++L++F  M    + PD+ T +++++AC+H G ++
Sbjct: 326 DQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLE 385

Query: 330 QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
            G  + K      +I   +     ++DMY + G  E+A+    +M    +++ W A++
Sbjct: 386 IGEWI-KTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFT-WTAMV 441


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 154/457 (33%), Positives = 255/457 (55%), Gaps = 32/457 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +TFT  L  C+      +  +IHAH+I      +I ++  L+H Y     +  A +IF
Sbjct: 277 DQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIF 336

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           N +   +  SW ++I G  + G  +EA+ +F  +    +KP+  +L S+LS+C SL   +
Sbjct: 337 NRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQ 396

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK--RNVVSWTTMIGG 183
            G+ +H   +RN  E   IL   ++D Y +CGS+     ++ +  K  RN   W +++ G
Sbjct: 397 KGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAG 456

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           YA +G  KE+ + F EM ++ + E +  T+V +++                         
Sbjct: 457 YANKGLKKESFNHFLEMLES-DIEYDVLTMVTIVNLL----------------------- 492

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
              ++  A+++MY KCG +  A  VF+ +  K+ +SW+ +ISG + +GC ++AL L+  M
Sbjct: 493 ---VLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEM 549

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
               ++P++VTF+A++SACSH GLV++GL +F +M   Y I  + +HY C+VD+ GRAG 
Sbjct: 550 PKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGR 609

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           LE+A+ F+ +MPIE E S WGALL ACR+H++ +M     Q L      + G + +MSN 
Sbjct: 610 LEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNI 669

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +A A RW++   IR  ++  G+KK  G SWIE+N  I
Sbjct: 670 YAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEI 706



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 204/395 (51%), Gaps = 20/395 (5%)

Query: 6   SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVT---VKDIF 62
           S  N   ++  ++ C  ++  Q+   IH  +I  G+  D ++   +L  Y     + D+ 
Sbjct: 67  SDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLC 126

Query: 63  SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEA---IDMFCGIDVKPNANTLVSVLSACS 119
            A ++F  +   ++ +W T+I   ++   + EA    D    I V P+  T  S L  C 
Sbjct: 127 YARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCG 186

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
           +L S   GK +H+  +    + +  + NA++D Y +C    SC  +F +M +RN V+W +
Sbjct: 187 ALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNS 246

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEA-EPNEATLVNVLSACSSISALSFGKYVHSYIST 238
           +I   A+ G   +A+ +F  M+++++  +P++ T   +L+ C++    + G+ +H+++  
Sbjct: 247 IISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHL-I 305

Query: 239 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQ 298
           R +++ + +V   +++MY +CG +  A ++FN +A ++  SW+++I G   NG  ++AL+
Sbjct: 306 RANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALR 365

Query: 299 LFSLMIINAVFPDDVTFIALISAC-----SHGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
           LF  M +N + PD  +  +++S+C     S  G      I+   M    E + Q+     
Sbjct: 366 LFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEE--EGILQV----V 419

Query: 354 VVDMYGRAGLLEEA-EAFIREMPIEAEWSVWGALL 387
           +VDMY + G ++ A + + + +  +   ++W ++L
Sbjct: 420 LVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSIL 454


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 153/454 (33%), Positives = 267/454 (58%), Gaps = 14/454 (3%)

Query: 12  TFTQALKACSLAHP--HQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN 69
           T+++ +K C L+H   H+  L I  H+   GH   +F+ N L++ YV    +  AHQ+F+
Sbjct: 15  TYSELIKCC-LSHRAVHEGNL-ICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDAHQLFD 72

Query: 70  SVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKL 126
            +   +V+SWTT+IS  SKC  H++A+++   +    V+PN  T  SVL AC+ +   ++
Sbjct: 73  QMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNGMSDVRM 132

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
              +H   ++   E+++ + +A++D + + G       +F +M   + + W ++IGG+A+
Sbjct: 133 ---LHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQ 189

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
                 A+ +F+ M++       +ATL +VL AC+ ++ L  G   H +I  +YD  +  
Sbjct: 190 NSRSDVALELFKRMKRAGFI-AEQATLTSVLRACTGLALLELGMQAHVHI-VKYDQDL-- 245

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
           ++ NA+++MY KCG +  A +VFN +  +D I+WST+ISGLA NG  ++AL+LF LM  +
Sbjct: 246 ILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFELMKSS 305

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
              P+ +T + ++ ACSH GL++ G   F++M  +Y I P  +HY C++D+ G+AG L++
Sbjct: 306 GTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKAGKLDD 365

Query: 367 AEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAG 426
           A   + EM  E +   W  LL ACR+ RN  + +   + ++       GT+ ++SN +A 
Sbjct: 366 AVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTVLSNIYAN 425

Query: 427 ADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           + +W+   +IR  +R +G+KK+ GCSWIEVN  I
Sbjct: 426 SQKWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQI 459


>gi|125562063|gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indica Group]
          Length = 567

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 167/486 (34%), Positives = 272/486 (55%), Gaps = 41/486 (8%)

Query: 1   MLSCPSSYNHYTFTQAL-KACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK 59
           +L C    + +T    L  A  L    +   ++HA  +  G L D+F+ N+LL  Y  ++
Sbjct: 85  LLRCGLVPDRFTLPPLLGSAGKLPAFPRTGAQVHAQAVRRGFLADVFVVNALLAMYGALR 144

Query: 60  DIFSAHQIFNSVV-FPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN-----TLVS 113
           D  S  ++F S     DVVSW T+I G  KCG  + A  +F   D  P  N     T+V 
Sbjct: 145 DAASMREVFGSCAGVADVVSWNTVIGGYVKCGEMESAKRVF---DEMPRRNGVSWSTMVG 201

Query: 114 VLSACSSL-VSHKLGKAIHA-----------------HSLRNLNEN--------NIILDN 147
             +A   L V+ ++   + A                 H L  L           N++  N
Sbjct: 202 GYAAAGELDVAREMFDRMPAIGRNVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSWN 261

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           A+L  Y     +     LF  MP+++VVSWT MI GYA+ G  ++ + +F+ M+     +
Sbjct: 262 AMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQ 321

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL--VGNAVINMYVKCGDVGIA 265
           PNE T+V+VLSAC++++AL  G++VH++I  ++ + ++N   +G A+I+MY KCG   IA
Sbjct: 322 PNEVTMVSVLSACANLTALEEGRWVHAFID-KHKMVLNNEYNLGAALIDMYAKCGRTDIA 380

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
           +++FN L  K+  +W+ +I+ LAMNG  + ++  F  M      P+D+TF+ +++ACSHG
Sbjct: 381 VKIFNSLDRKNVSAWNALITRLAMNGNAQDSVDAFEQMKRTGEKPNDITFVGVLTACSHG 440

Query: 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 385
           GLVD+G   F++M++   + P+++HY C+VDM GRAGLLEEAE  IR MP+  +  V+GA
Sbjct: 441 GLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMPMAPDVMVFGA 500

Query: 386 LLNACRIHRNDEMFDRIRQDL--VNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443
           LL ACR+H+  ++ +R++ ++  +N      G   L+S+ +A A +W D  + R  ++R 
Sbjct: 501 LLGACRMHKRFDVAERVQSEIHSLNLNAQQSGCHVLISDIYAAAGKWFDVLEARQVVQRS 560

Query: 444 GLKKKT 449
           G++K T
Sbjct: 561 GIRKWT 566


>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 866

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 163/452 (36%), Positives = 261/452 (57%), Gaps = 8/452 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T T  + AC L    +   +IHA+VI  G   DI + NSL   Y+       A ++F+ +
Sbjct: 299 TLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRM 358

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
              D+VSWTT+ISG       ++AID +  +D   VKP+  T+ +VLSAC++L     G 
Sbjct: 359 DCKDIVSWTTMISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGV 418

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H  +++    + +I+ N +++ Y +C  +     +F  +P++NV+SWT++I G     
Sbjct: 419 ELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNN 478

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
            C EA+  F++M+ T   +PN  TL   L+AC+ I AL  GK +H+++  R  + + + +
Sbjct: 479 RCFEALIFFRQMKMT--LQPNAITLTAALAACARIGALMCGKEIHAHV-LRTGVGLDDFL 535

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            NA+++MYV+CG + IA   FN    KD  SW+ +++G +  G G   ++LF  M+   V
Sbjct: 536 PNALLDMYVRCGRMNIAWNQFNS-QKKDVSSWNILLTGYSERGQGSVVVELFDRMVKARV 594

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD++TFI+L+  C    +V QGL+ F  M   Y + P ++HYACVVD+ GRAG L+EA 
Sbjct: 595 RPDEITFISLLCGCGKSQMVRQGLMYFSKMEE-YGVTPNLKHYACVVDLLGRAGELQEAH 653

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
            FI++MP+  + +VWGALLNACRIH N ++ +   Q +      SVG + L+ N +A   
Sbjct: 654 KFIQKMPVTPDPAVWGALLNACRIHHNIDLGELSAQRIFELDKGSVGYYILLCNLYADCG 713

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +W +  K+R  ++  GL    GCSW+EV   +
Sbjct: 714 KWREVAKVRRMMKENGLTVDAGCSWVEVKGKV 745



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 99/296 (33%), Positives = 164/296 (55%), Gaps = 5/296 (1%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           YTF   L+ C       +  E+H HV+ YG+  DI + N+L+  YV   D+ SA  +F+ 
Sbjct: 197 YTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDR 256

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKLG 127
           +   D++SW  +ISG  + G   E + +F    G+ V P+  TL SV+SAC  L   +LG
Sbjct: 257 MPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGDRRLG 316

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           + IHA+ +      +I + N++   Y+  GS      LF +M  +++VSWTTMI GY   
Sbjct: 317 RDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMISGYEYN 376

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
              ++A+  ++ M++    +P+E T+  VLSAC+++  L  G  +H  ++ +  L    +
Sbjct: 377 FLPEKAIDTYRMMDQ-DSVKPDEITVAAVLSACATLGDLDTGVELHK-LAIKARLISYVI 434

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           V N +INMY KC  +  A+ +F+ +  K+ ISW+++I+GL +N    +AL  F  M
Sbjct: 435 VANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFFRQM 490



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 202/390 (51%), Gaps = 18/390 (4%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           F   ++ C     H++  ++++  +   +   + + N+ L  +V   ++  A  +F  + 
Sbjct: 97  FVALVRLCEWKRAHEEGSKVYSVALSSMNSLSVELGNAFLAMFVRFGNLVDAWYVFGKMS 156

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGK 128
             ++ SW  ++ G +K G+  EAI ++  +     VKP+  T   VL  C  +     G+
Sbjct: 157 ERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGR 216

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H H +R   E +I + NA++  Y++CG + S   LF +MP+R+++SW  MI GY E G
Sbjct: 217 EVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENG 276

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSNL 247
              E + +F  M +    +P+  TL +V+SAC  +     G+ +H+Y I+T + + +S  
Sbjct: 277 MGHEGLKLFFAM-RGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDIS-- 333

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V N++  MY+  G    A ++F+ +  KD +SW+T+ISG   N    +A+  + +M  ++
Sbjct: 334 VCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMISGYEYNFLPEKAIDTYRMMDQDS 393

Query: 308 VFPDDVTFIALISACSHGGLVDQGLIL----FKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
           V PD++T  A++SAC+  G +D G+ L     KA    Y IV        +++MY +   
Sbjct: 394 VKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANN-----LINMYSKCKC 448

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           +++A      +P +   S W +++   R++
Sbjct: 449 IDKALDIFHNIPRKNVIS-WTSIIAGLRLN 477



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/244 (34%), Positives = 137/244 (56%), Gaps = 4/244 (1%)

Query: 83  ISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLN 139
           + GL   G  +EA+ +   +    V  + +  V+++  C    +H+ G  +++ +L ++N
Sbjct: 66  LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAHEEGSKVYSVALSSMN 125

Query: 140 ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQE 199
             ++ L NA L  ++R G+L    Y+F KM +RN+ SW  ++GGYA++G+  EA+ ++  
Sbjct: 126 SLSVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHR 185

Query: 200 MEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKC 259
           M      +P+  T   VL  C  I  L+ G+ VH ++  RY   +   V NA+I MYVKC
Sbjct: 186 MLWVGGVKPDVYTFPCVLRTCGGIPDLARGREVHVHV-VRYGYELDIDVVNALITMYVKC 244

Query: 260 GDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALI 319
           GDV  A  +F+ +  +D ISW+ +ISG   NG G + L+LF  M   +V PD +T  ++I
Sbjct: 245 GDVKSARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVI 304

Query: 320 SACS 323
           SAC 
Sbjct: 305 SACE 308


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 155/433 (35%), Positives = 248/433 (57%), Gaps = 5/433 (1%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           IH + I+ G   D+F+ N+L++ Y    ++ SA  IFN +   D+VSW ++++   +   
Sbjct: 262 IHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKK 321

Query: 92  HKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRN-LNENNIILDN 147
              A+ ++     I V P+  TLVS+ S  + L +    ++IH    R     ++I L N
Sbjct: 322 PVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGN 381

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           AI+D Y + G + S   +F  +P ++V+SW ++I GY++ G   EA+ V+  M     A 
Sbjct: 382 AIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAV 441

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
           PN+ T V++L+A S + AL  G   H  +   + L     V   +++MY KCG +  A+ 
Sbjct: 442 PNQGTWVSILTAHSQLGALKQGMKAHGQLIKNF-LYFDIFVSTCLVDMYGKCGKLADALS 500

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           +F  + ++  +SW+ +IS   ++G G +A++LF  M    V PD +TF++L+SACSH GL
Sbjct: 501 LFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGL 560

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           VD+G   F+ M   Y I P ++HY C+VD++GRAG LE+A  F++ MP+  + SVWGALL
Sbjct: 561 VDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALL 620

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
            ACRIH N E+   +   L+  +  +VG + L+SN +A    WE  +++R   R  GLKK
Sbjct: 621 GACRIHENVELVRTVSDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKK 680

Query: 448 KTGCSWIEVNPSI 460
             G S IEV+  I
Sbjct: 681 TPGWSSIEVDKKI 693



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 205/394 (52%), Gaps = 20/394 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +HYTF   ++AC      +K   +H  V++ G   D++I  S +HFY     +  A  +F
Sbjct: 141 DHYTFPPVIRACGNLDDGRK---VHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLF 197

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKP---NANTLVSVLSACSSLVSHK 125
           ++++  D+ +W  +ISG    G   EA+++F  +  K    ++ T+ S+L  C  L    
Sbjct: 198 DNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDII 257

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G  IH ++++   E ++ + NA+++ Y + G L S   +F +M  R++VSW +++  + 
Sbjct: 258 SGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFE 317

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +      A+ V+ +M       P+  TLV++ S  + +      + +H +++ R      
Sbjct: 318 QNKKPVIALGVYNKMHSIG-VVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHD 376

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM-I 304
             +GNA+I+MY K G +  A +VF  L  KD ISW+++I+G + NG   +A+ ++S M  
Sbjct: 377 IALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRY 436

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY-----ACVVDMYG 359
            +   P+  T++++++A S  G + QG      M    +++    ++      C+VDMYG
Sbjct: 437 YSGAVPNQGTWVSILTAHSQLGALKQG------MKAHGQLIKNFLYFDIFVSTCLVDMYG 490

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           + G L +A +   E+P ++  S W A+++   +H
Sbjct: 491 KCGKLADALSLFYEVPHQSSVS-WNAIISCHGLH 523



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 177/381 (46%), Gaps = 13/381 (3%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           F +    C+  H    A ++HA ++  G    IF+   L++ Y  + DI  A   F+ + 
Sbjct: 46  FNRIFLYCTKVHL---AKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQ 102

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGK 128
             DV +W ++IS  ++ G    A+D F        ++ +  T   V+ AC +L     G+
Sbjct: 103 TKDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDD---GR 159

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H   L+   E ++ +  + + FY R G ++    LF  M  R++ +W  MI G+   G
Sbjct: 160 KVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNG 219

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
              EA+ VF EM + K    +  T+ ++L  C  +  +  G  +H Y + +  L     V
Sbjct: 220 KVAEALEVFDEM-RFKSVSMDSVTISSLLPICVQLDDIISGVLIHVY-AIKLGLEFDLFV 277

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            NA+INMY K G++  A  +FN +  +D +SW+++++    N     AL +++ M    V
Sbjct: 278 CNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGV 337

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD +T ++L S  +  G       +   ++     +  +     ++DMY + G ++ A 
Sbjct: 338 VPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSAR 397

Query: 369 AFIREMPIEAEWSVWGALLNA 389
                +P++   S W +L+  
Sbjct: 398 KVFEGLPVKDVIS-WNSLITG 417


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 154/458 (33%), Positives = 252/458 (55%), Gaps = 9/458 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L ACS  H      EIH +   +G L D  + N+ +  Y     +  A ++F
Sbjct: 400 NEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVF 459

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLVS 123
             +    V SW  +I   ++ GF  +++D+F      G+D  P+  T+ S+L AC+ L  
Sbjct: 460 CGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMD--PDRFTIGSLLLACARLKF 517

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            + GK IH   LRN  E +  +  +++  YI+C S+     +F KM  +++V W  MI G
Sbjct: 518 LRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITG 577

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           +++     EA+  F++M  +   +P E  +  VL ACS +SAL  GK VHS+ + +  LS
Sbjct: 578 FSQNELPCEALDTFRQM-LSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSF-ALKAHLS 635

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
               V  A+I+MY KCG +  +  +F+ +  KD+  W+ +I+G  ++G G +A++LF LM
Sbjct: 636 EDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELM 695

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
                 PD  TF+ ++ AC+H GLV +GL     M  +Y + P+++HYACVVDM GRAG 
Sbjct: 696 QNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQ 755

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           L EA   + EMP E +  +W +LL++CR + + E+ + + + L+  +      + L+SN 
Sbjct: 756 LTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAENYVLLSNL 815

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           +AG  +W++  K+R  ++  GL K  GCSWIE+   ++
Sbjct: 816 YAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIGGMVY 853



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 173/343 (50%), Gaps = 18/343 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +++T     KAC+     +    +HA  ++ G   D F+ N+L+  Y     + SA ++F
Sbjct: 194 DNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVF 253

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK------PNANTLVSVLSACSSLV 122
            ++   ++VSW +++   S+ G   E   +F  + +       P+  T+V+V+ AC+++ 
Sbjct: 254 ETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVG 313

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
             ++G  +H  + +      + ++N+++D Y +CG L     LF     +NVVSW T+I 
Sbjct: 314 EVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIW 373

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
           GY++ G  +    + QEM++ ++   NE T++NVL ACS    L   K +H Y + R+  
Sbjct: 374 GYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGY-AFRHGF 432

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
               LV NA +  Y KC  +  A +VF  +  K   SW+ +I   A NG   ++L LF +
Sbjct: 433 LKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLV 492

Query: 303 MIINAVFPDDVTFIALISACS-----------HGGLVDQGLIL 334
           M+ + + PD  T  +L+ AC+           HG ++  GL L
Sbjct: 493 MMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLEL 535



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 163/315 (51%), Gaps = 9/315 (2%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 75
           L+AC          ++HA V     L +D+ +   ++  Y        +  +F++    D
Sbjct: 99  LRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKD 158

Query: 76  VVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIH 131
           +  +  ++SG S+    ++AI +F  +    D+ P+  TL  V  AC+ +   +LG+A+H
Sbjct: 159 LFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVH 218

Query: 132 AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
           A +L+    ++  + NA++  Y +CG + S   +F  M  RN+VSW +++   +E G   
Sbjct: 219 ALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFG 278

Query: 192 EAVSVFQEMEKTKEAE--PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
           E   VF+ +  ++E    P+ AT+V V+ AC+++  +  G  VH  ++ +  ++    V 
Sbjct: 279 ECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHG-LAFKLGITEEVTVN 337

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII-NAV 308
           N++++MY KCG +G A  +F+M   K+ +SW+T+I G +  G  R   +L   M     V
Sbjct: 338 NSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKV 397

Query: 309 FPDDVTFIALISACS 323
             ++VT + ++ ACS
Sbjct: 398 RVNEVTVLNVLPACS 412



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 135/265 (50%), Gaps = 14/265 (5%)

Query: 114 VLSACSSLVSHKLGKAIHA-----HSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168
           +L AC    +  +G+ +HA     H LRN    +++L   I+  Y  CGS +    +F  
Sbjct: 98  LLRACGHHKNIHVGRKVHALVSASHKLRN----DVVLSTRIIAMYSACGSPSDSRGVFDA 153

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
             ++++  +  ++ GY+     ++A+S+F E+    +  P+  TL  V  AC+ ++ +  
Sbjct: 154 AKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVEL 213

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
           G+ VH+        S +  VGNA+I MY KCG V  A++VF  +  ++ +SW++V+   +
Sbjct: 214 GEAVHALALKAGGFSDA-FVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACS 272

Query: 289 MNGCGRQALQLFSLMIIN---AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 345
            NG   +   +F  ++I+    + PD  T + +I AC+  G V  G+++   ++    I 
Sbjct: 273 ENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVV-HGLAFKLGIT 331

Query: 346 PQMQHYACVVDMYGRAGLLEEAEAF 370
            ++     +VDMY + G L EA A 
Sbjct: 332 EEVTVNNSLVDMYSKCGYLGEARAL 356



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 15/182 (8%)

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           +L AC     +  G+ VH+ +S  + L    ++   +I MY  CG    +  VF+    K
Sbjct: 98  LLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEK 157

Query: 276 DKISWSTVISGLAMNGCGRQALQLF-SLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           D   ++ ++SG + N   R A+ LF  L+    + PD+ T   +  AC+    V+ G   
Sbjct: 158 DLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELG--- 214

Query: 335 FKAMSTVYEIVPQMQHYA------CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
                 V+ +  +   ++       ++ MYG+ G +E A      M      S W +++ 
Sbjct: 215 ----EAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVS-WNSVMY 269

Query: 389 AC 390
           AC
Sbjct: 270 AC 271



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 95/220 (43%), Gaps = 16/220 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           MLS          T  L ACS     +   E+H+  ++     D F+  +L+  Y     
Sbjct: 594 MLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGC 653

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSA 117
           +  +  IF+ V   D   W  II+G    G   +AI++F  +  K   P++ T + VL A
Sbjct: 654 MEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIA 713

Query: 118 C--SSLVSHKLGKAIHAHSLRNLNENNIILDN--AILDFYIRCGSLASCGYLFVKMPKR- 172
           C  + LV+  L    +   ++NL      L++   ++D   R G L     L  +MP   
Sbjct: 714 CNHAGLVTEGLK---YLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEP 770

Query: 173 NVVSWTTMIGGYAERGFCKEAVSVFQEM-EKTKEAEPNEA 211
           +   W++++      G     + + +E+ +K  E EPN+A
Sbjct: 771 DSGIWSSLLSSCRNYG----DLEIGEEVSKKLLELEPNKA 806


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 149/456 (32%), Positives = 260/456 (57%), Gaps = 6/456 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLH-DIFIQNSLLHFYVTVKDIFSAHQI 67
           N  T    L  C       K  EIH + + +G +  D  + N+ +  Y     +  A  +
Sbjct: 399 NEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGV 458

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSH 124
           F  +    V SW  +I G  + GF ++A+D++    G  ++P+  T+ S+LSAC+ L S 
Sbjct: 459 FCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSL 518

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
             GK IH   LRN  E +  +  +++  Y++CG +      F  M ++N+V W TMI G+
Sbjct: 519 SCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGF 578

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           ++  F  +A+ +F +M  +K   P+E +++  L ACS +SAL  GK +H + + +  L+ 
Sbjct: 579 SQNEFPFDALDMFHQMLSSK-IWPDEISIIGALGACSQVSALRLGKELHCF-AVKSHLTE 636

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
            + V  ++I+MY KCG +  +  +F+ +  K +++W+ +I+G  ++G GR+A++LF  M 
Sbjct: 637 HSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQ 696

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
                PD VTFIAL++AC+H GLV +GL     M +++ I P+++HYACVVDM GRAG L
Sbjct: 697 NAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRL 756

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
            EA   + E+P + +  +W +LL++CR +R+ ++ +++   L+         + L+SN +
Sbjct: 757 NEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLISNFY 816

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           A   +W++  K+R  ++ +GL+K  GCSWIE+   +
Sbjct: 817 ARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKV 852



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 107/412 (25%), Positives = 194/412 (47%), Gaps = 36/412 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +++T    +KAC   +  +    +H   ++   L D+F+ N+L+  Y     + SA ++F
Sbjct: 195 DNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVF 254

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI-----DVKPNANTLVSVLSACSSLVS 123
           + +   ++VSW +++    + G  +E+  +F G+      + P+  T+V+V+  C+    
Sbjct: 255 DKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGE 314

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            +LG   H  +L+      + +++++LD Y +CG L     LF    ++NV+SW +MIGG
Sbjct: 315 VRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLF-DTNEKNVISWNSMIGG 373

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           Y++    + A  + ++M+   + + NE TL+NVL  C         K +H Y      + 
Sbjct: 374 YSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQ 433

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
              LV NA +  Y KCG +  A  VF  +  K   SW+ +I G   NG  R+AL L+ LM
Sbjct: 434 SDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLM 493

Query: 304 IINAVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
             + + PD  T  +L+SAC+           HG ++  G               ++  + 
Sbjct: 494 RGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGF--------------ELDEFI 539

Query: 353 CV--VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRI 402
           C+  V +Y + G +  A+ F   M  E     W  ++N     +N+  FD +
Sbjct: 540 CISLVSLYVQCGKILLAKLFFDNME-EKNLVCWNTMING--FSQNEFPFDAL 588



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 150/299 (50%), Gaps = 9/299 (3%)

Query: 31  EIHAHVIEYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
           +IH  +    H   D+ +   L+  Y      + +  +FN+    ++  W  ++SG  + 
Sbjct: 114 KIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRN 173

Query: 90  GFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
              ++A+    +M    +  P+  TL  V+ AC  +   +LG+A+H  +L+    +++ +
Sbjct: 174 SLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFV 233

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            NA++  Y + G + S   +F KMP+RN+VSW +++    E G  +E+  +F+ +    E
Sbjct: 234 GNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDE 293

Query: 206 A-EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
              P+ AT+V V+  C+    +  G   H  ++ +  L     V +++++MY KCG +  
Sbjct: 294 GLMPDVATMVTVIPLCARQGEVRLGMVFHG-LALKLGLCGELKVNSSLLDMYSKCGYLCE 352

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII-NAVFPDDVTFIALISAC 322
           A  +F+    K+ ISW+++I G + +   R A +L   M + + V  ++VT + ++  C
Sbjct: 353 ARVLFDT-NEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVC 410



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           +L  C     +  G+ +H++IST        ++   ++ MY  C     +  VFN    K
Sbjct: 99  LLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRK 158

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMI-INAVFPDDVTFIALISACSHGGLVDQGL-I 333
           +   W+ ++SG   N   R A+ +F  MI +    PD+ T   +I AC   G+ D  L  
Sbjct: 159 NLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACV--GVYDVRLGE 216

Query: 334 LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 390
                +   +++  +     ++ MYG+ G +E A     +MP +     W +++ AC
Sbjct: 217 AVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMP-QRNLVSWNSVMYAC 272



 Score = 46.2 bits (108), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 84/189 (44%), Gaps = 11/189 (5%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           MLS     +  +   AL ACS     +   E+H   ++       F+  SL+  Y     
Sbjct: 594 MLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGC 653

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           +  +  IF+ V     V+W  +I+G    G  ++AI++F  +     +P++ T +++L+A
Sbjct: 654 MEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTA 713

Query: 118 C--SSLVSHKLGKAIHAHSLRNLNENNIILDN--AILDFYIRCGSLASCGYLFVKMP-KR 172
           C  + LV+  L       SL  +      L++   ++D   R G L     L  ++P K 
Sbjct: 714 CNHAGLVAEGLEYLGQMQSLFGIKPK---LEHYACVVDMLGRAGRLNEALELVNELPDKP 770

Query: 173 NVVSWTTMI 181
           +   W++++
Sbjct: 771 DSRIWSSLL 779


>gi|357130409|ref|XP_003566841.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 815

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 152/456 (33%), Positives = 262/456 (57%), Gaps = 8/456 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           NHY F       S          +HA++++ G      + +++L+ YV V  +  A   F
Sbjct: 352 NHYIFVGIAGVASRTGDANLCRSVHAYIVKSGFAMLKGVGDAILNMYVKVGAVQDATVTF 411

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHK 125
           + +  PD  SW TI+S        ++ + +F  +  +    N  T VSVL  C+SL++ +
Sbjct: 412 DLIHEPDTFSWNTILSAFYSGSNCEQGLRIFKQMACEGFSANKYTYVSVLRCCTSLMNLR 471

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G  +HA  L++  +N+  +   ++D Y + G   S   +F ++ +R+  SWT ++ GYA
Sbjct: 472 FGTQVHACILKSGLQNDTDVSRMLVDMYAQSGCFTSACLVFEQLKERDAFSWTVIMSGYA 531

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSV 244
           +    ++ V  F+ M + +   P++ATL   LS CS +++L  G  +HS+ I + ++   
Sbjct: 532 KTEEAEKVVEYFRSMLR-ENIRPSDATLAVSLSVCSDMASLGSGLQLHSWAIKSGWN--- 587

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           S++V  A+++MYVKCG++  A  +F+    +D+++W+T+I G + +G G +AL  F  M+
Sbjct: 588 SSVVSGALVDMYVKCGNIADAEMLFHESETRDQVAWNTIICGYSQHGHGYKALDAFKQMV 647

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
                PD +TF+ ++SACSH GL+++G   FK++S++Y I P M+HYAC+VD+  +AG L
Sbjct: 648 DEGKRPDGITFVGVLSACSHAGLLNEGRKYFKSLSSIYGITPTMEHYACMVDILSKAGRL 707

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
            EAE+ I +MP+  + S+W  +L ACRIHRN E+ +R  + L   +     +  L+SN +
Sbjct: 708 VEAESLINQMPLAPDSSIWRTILGACRIHRNIEIAERAAERLFELEPHDASSSILLSNIY 767

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           A   RW D  ++R+ +   G+KK+ GCSWIE+N  I
Sbjct: 768 ADLGRWSDVTRVRNILLDHGVKKEPGCSWIEINGQI 803



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 188/405 (46%), Gaps = 29/405 (7%)

Query: 16  ALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 75
           AL+ C++    ++  E+HA ++      D F+ +SLL+ Y     +  A ++F+ +   D
Sbjct: 56  ALQDCAVRRTLRRGQELHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPHRD 115

Query: 76  VVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHA 132
           +V+WT +IS  +  G   +A+DMF  ++   + PN  TL SVL ACS     K    +H 
Sbjct: 116 IVAWTAMISAHTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACSGGSHSKFTHQVHG 175

Query: 133 HSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKE 192
             ++    ++  + +++++ Y  CG L +   + + +P+R+ VSW  ++ GYA  G  + 
Sbjct: 176 QVVKLNGLDDPYVGSSLVEAYTSCGELDAAETVLLGLPERSDVSWNALLNGYARHGDYRR 235

Query: 193 AVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAV 252
            + + +++  + + E ++ TL  VL  C  +    +G+ VH+ +  R  L   N++ + +
Sbjct: 236 VMIIIEKLVASGD-EISKYTLPTVLKCCMELGLAKYGQSVHASVIKR-GLETDNVLNSCL 293

Query: 253 INMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD 312
           + MY +C     A +VF  +   D +  S +IS    +    +AL LF  M    V P+ 
Sbjct: 294 VEMYSRCLSAEEAYEVFIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVKPNH 353

Query: 313 VTFIALISACSHGG-----------LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
             F+ +    S  G           +V  G  + K +               +++MY + 
Sbjct: 354 YIFVGIAGVASRTGDANLCRSVHAYIVKSGFAMLKGVGDA------------ILNMYVKV 401

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDL 406
           G +++A     ++  E +   W  +L+A     N E   RI + +
Sbjct: 402 GAVQDATVTF-DLIHEPDTFSWNTILSAFYSGSNCEQGLRIFKQM 445



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 153/318 (48%), Gaps = 5/318 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +T    LKACS     +   ++H  V++   L D ++ +SL+  Y +  ++ +A  + 
Sbjct: 150 NGFTLASVLKACSGGSHSKFTHQVHGQVVKLNGLDDPYVGSSLVEAYTSCGELDAAETVL 209

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEA---IDMFCGIDVKPNANTLVSVLSACSSLVSHK 125
             +     VSW  +++G ++ G ++     I+       + +  TL +VL  C  L   K
Sbjct: 210 LGLPERSDVSWNALLNGYARHGDYRRVMIIIEKLVASGDEISKYTLPTVLKCCMELGLAK 269

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+++HA  ++   E + +L++ +++ Y RC S      +F+++ + +VV  + MI  + 
Sbjct: 270 YGQSVHASVIKRGLETDNVLNSCLVEMYSRCLSAEEAYEVFIRIDEPDVVHCSAMISCFD 329

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
                 EA+ +F +M      +PN    V +    S     +  + VH+YI  +   ++ 
Sbjct: 330 RHDMAWEALDLFVKMSGMG-VKPNHYIFVGIAGVASRTGDANLCRSVHAYI-VKSGFAML 387

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             VG+A++NMYVK G V  A   F+++   D  SW+T++S         Q L++F  M  
Sbjct: 388 KGVGDAILNMYVKVGAVQDATVTFDLIHEPDTFSWNTILSAFYSGSNCEQGLRIFKQMAC 447

Query: 306 NAVFPDDVTFIALISACS 323
                +  T+++++  C+
Sbjct: 448 EGFSANKYTYVSVLRCCT 465



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 151/304 (49%), Gaps = 10/304 (3%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S N YT+   L+ C+     +   ++HA +++ G  +D  +   L+  Y       SA  
Sbjct: 451 SANKYTYVSVLRCCTSLMNLRFGTQVHACILKSGLQNDTDVSRMLVDMYAQSGCFTSACL 510

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVS 123
           +F  +   D  SWT I+SG +K    ++ ++ F  +   +++P+  TL   LS CS + S
Sbjct: 511 VFEQLKERDAFSWTVIMSGYAKTEEAEKVVEYFRSMLRENIRPSDATLAVSLSVCSDMAS 570

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
              G  +H+ ++++   N+ ++  A++D Y++CG++A    LF +   R+ V+W T+I G
Sbjct: 571 LGSGLQLHSWAIKS-GWNSSVVSGALVDMYVKCGNIADAEMLFHESETRDQVAWNTIICG 629

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           Y++ G   +A+  F++M    +  P+  T V VLSACS    L+ G+     +S+ Y ++
Sbjct: 630 YSQHGHGYKALDAFKQMVDEGK-RPDGITFVGVLSACSHAGLLNEGRKYFKSLSSIYGIT 688

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDKISWSTVISGLAMNG----CGRQALQ 298
            +      ++++  K G +  A  + N +    D   W T++    ++       R A +
Sbjct: 689 PTMEHYACMVDILSKAGRLVEAESLINQMPLAPDSSIWRTILGACRIHRNIEIAERAAER 748

Query: 299 LFSL 302
           LF L
Sbjct: 749 LFEL 752



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 126/266 (47%), Gaps = 14/266 (5%)

Query: 113 SVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKR 172
           + L  C+   + + G+ +HA  LR+    +  L +++L+ Y +CG L     +F  MP R
Sbjct: 55  AALQDCAVRRTLRRGQELHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPHR 114

Query: 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYV 232
           ++V+WT MI  +   G   +A+ +F  M +   A PN  TL +VL ACS  S   F   V
Sbjct: 115 DIVAWTAMISAHTAAGDSDQALDMFARMNQEGIA-PNGFTLASVLKACSGGSHSKFTHQV 173

Query: 233 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
           H  +     L     VG++++  Y  CG++  A  V   L  +  +SW+ +++G A +G 
Sbjct: 174 HGQVVKLNGLD-DPYVGSSLVEAYTSCGELDAAETVLLGLPERSDVSWNALLNGYARHGD 232

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL-----ILFKAMSTVYEIVPQ 347
            R+ + +   ++ +       T   ++  C   GL   G      ++ + + T   +   
Sbjct: 233 YRRVMIIIEKLVASGDEISKYTLPTVLKCCMELGLAKYGQSVHASVIKRGLETDNVL--- 289

Query: 348 MQHYACVVDMYGRAGLLEEA-EAFIR 372
               +C+V+MY R    EEA E FIR
Sbjct: 290 ---NSCLVEMYSRCLSAEEAYEVFIR 312


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 161/468 (34%), Positives = 265/468 (56%), Gaps = 12/468 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML      +++T+   LKAC      +   ++HA V+  G   D+++ NS+L  Y    D
Sbjct: 115 MLHFGQKPDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGD 174

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNA-----NTLVSVL 115
           + +A  +F+ ++  D+ SW T++SG  K G  + A ++F   D++ +       TL+++L
Sbjct: 175 VEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFG--DMRRDGFVGDRTTLLALL 232

Query: 116 SACSSLVSHKLGKAIHAHSLRNLNENNI---ILDNAILDFYIRCGSLASCGYLFVKMPKR 172
           SAC  ++  K+GK IH + +RN     +    L N+I+D Y  C S++    LF  +  +
Sbjct: 233 SACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVK 292

Query: 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYV 232
           +VVSW ++I GY + G   +A+ +F  M     A P+E T+++VL+AC+ ISAL  G  V
Sbjct: 293 DVVSWNSLISGYEKCGDAFQALELFGRMVVVG-AVPDEVTVISVLAACNQISALRLGATV 351

Query: 233 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
            SY+  R    V+ +VG A+I MY  CG +  A +VF+ +  K+  + + +++G  ++G 
Sbjct: 352 QSYVVKR-GYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGR 410

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
           GR+A+ +F  M+   V PD+  F A++SACSH GLVD+G  +F  M+  Y + P+  HY+
Sbjct: 411 GREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYS 470

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           C+VD+ GRAG L+EA A I  M ++    VW ALL+ACR+HRN ++     Q L      
Sbjct: 471 CLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPD 530

Query: 413 SVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            V  +  +SN +A   RWED   +R  + +  L+K    S++E+N  +
Sbjct: 531 GVSGYVCLSNIYAAERRWEDVENVRALVAKRRLRKPPSYSFVELNKMV 578



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 115/447 (25%), Positives = 212/447 (47%), Gaps = 47/447 (10%)

Query: 5   PSSYNHYTFTQA---LKACSLAHPHQKALEIHAHVIEYGHL-HDIFIQNSLLHFYVTVKD 60
           PSS + +   Q    L++ + +    +AL++HAHV   G L  + ++   L   Y     
Sbjct: 14  PSSTSTFDSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGH 73

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           +  A  IF+ +V  +   W ++I G +       A+ ++  +     KP+  T   VL A
Sbjct: 74  MPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKA 133

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C  L+  ++G+ +HA  +    E ++ + N+IL  Y + G + +   +F +M  R++ SW
Sbjct: 134 CGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSW 193

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
            TM+ G+ + G  + A  VF +M +      +  TL+ +LSAC  +  L  GK +H Y+ 
Sbjct: 194 NTMMSGFVKNGEARGAFEVFGDMRRDGFV-GDRTTLLALLSACGDVMDLKVGKEIHGYVV 252

Query: 238 TRYDLS--VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
              +     +  + N++I+MY  C  V  A ++F  L  KD +SW+++ISG    G   Q
Sbjct: 253 RNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQ 312

Query: 296 ALQLFSLMIINAVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMST---- 340
           AL+LF  M++    PD+VT I++++AC+              +V +G ++   + T    
Sbjct: 313 ALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIG 372

Query: 341 -------------VYEIVPQMQHYACVVDM--YGRAGLLEEAEAFIREM---PIEAEWSV 382
                        V++ +P+    AC V +  +G  G   EA +   EM    +  +  +
Sbjct: 373 MYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGI 432

Query: 383 WGALLNACR----IHRNDEMFDRIRQD 405
           + A+L+AC     +    E+F ++ +D
Sbjct: 433 FTAVLSACSHSGLVDEGKEIFYKMTRD 459


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 155/455 (34%), Positives = 262/455 (57%), Gaps = 12/455 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           TF+ AL ACS+     +  EI A  +  G+  D  +QN+L++ Y     + SA ++F+ +
Sbjct: 165 TFSSALYACSVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRL 224

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              DV++W T+ISG +K G   +A+++F  +   D KPN  T + +L+AC++L   + G+
Sbjct: 225 KNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGR 284

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGS-LASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           AIH     +  E+++++ N +L+ Y +C S L     +F ++  R+V++W  +I  Y + 
Sbjct: 285 AIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQY 344

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSVSN 246
           G  K+A+ +F++M+  +   PNE TL NVLSAC+ + A   GK VH+ I S R    V  
Sbjct: 345 GQAKDALDIFKQMQ-LENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADV-- 401

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
           ++ N+++NMY +CG +   + VF  +  K  +SWST+I+  A +G  R  L+ F  ++  
Sbjct: 402 VLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQE 461

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
            +  DDVT ++ +SACSHGG++ +G+  F +M   + + P  +H+ C+VD+  RAG LE 
Sbjct: 462 GLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEA 521

Query: 367 AEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV-GTFALMSNTFA 425
           AE  I +MP   +   W +LL+ C++H + +   R+   L   +      T  L+SN +A
Sbjct: 522 AENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYA 581

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            A RW+D  K R+   R   +K  GCS+IE+N ++
Sbjct: 582 EAGRWDDVRKTRN---RRAARKNPGCSYIEINDTV 613



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 107/368 (29%), Positives = 194/368 (52%), Gaps = 23/368 (6%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           F  A+  CS +   ++   +HA ++E   L  DI +  +L+  Y   +D+  A + F+ +
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI------DVKPNANTLVSVLSACSSLVSHK 125
               +V+W  +I+G S+ G H+ A+ ++  +       +KP+A T  S L ACS +    
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ I A ++ +   ++ I+ NA+++ Y +CGSL S   +F ++  R+V++W TMI GYA
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           ++G   +A+ +FQ M    + +PN  T + +L+AC+++  L  G+ +H  +   +     
Sbjct: 241 KQGAATQALELFQRM-GPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVK-EHGYESD 298

Query: 246 NLVGNAVINMYVKC-GDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
            ++GN ++NMY KC   +  A QVF  L  +D I+W+ +I      G  + AL +F  M 
Sbjct: 299 LVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQ 358

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVV------DMY 358
           +  V P+++T   ++SAC+  G   QG         V+ ++   +  A VV      +MY
Sbjct: 359 LENVAPNEITLSNVLSACAVLGAKRQG-------KAVHALIASGRCKADVVLENSLMNMY 411

Query: 359 GRAGLLEE 366
            R G L++
Sbjct: 412 NRCGSLDD 419



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 95/290 (32%), Positives = 163/290 (56%), Gaps = 9/290 (3%)

Query: 54  FYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANT 110
            Y     +  A  +F+++  P+ VSWT I++  ++ G ++EA+  +  +    ++P+   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 111 LVSVLSACSSLVSHKLGKAIHAHSLR-NLNENNIILDNAILDFYIRCGSLASCGYLFVKM 169
            V  +  CSS    K G+ +HA  L   L E +IIL  A++  Y RC  L      F +M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 170 PKRNVVSWTTMIGGYAERGFCKEAVSVFQEM-EKTKEA-EPNEATLVNVLSACSSISALS 227
            K+ +V+W  +I GY+  G  + A+ ++Q+M  K+ E  +P+  T  + L ACS +  +S
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 228 FGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
            G+ + +  +++ Y  +  ++V NA+INMY KCG +  A +VF+ L  +D I+W+T+ISG
Sbjct: 181 QGREIEARTVASGY--ASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISG 238

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFK 336
            A  G   QAL+LF  M  N   P+ VTFI L++AC++   ++QG  + +
Sbjct: 239 YAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHR 288



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 162/305 (53%), Gaps = 14/305 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV-KDIFSAHQI 67
           N  TF   L AC+     ++   IH  V E+G+  D+ I N LL+ Y      +  A Q+
Sbjct: 263 NVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQV 322

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSH 124
           F  +   DV++W  +I    + G  K+A+D+F  +   +V PN  TL +VLSAC+ L + 
Sbjct: 323 FERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAK 382

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           + GKA+HA       + +++L+N++++ Y RCGSL     +F  +  +++VSW+T+I  Y
Sbjct: 383 RQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAY 442

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           A+ G  +  +  F E+ +   A  ++ T+V+ LSACS    L  G  V S++S   D  +
Sbjct: 443 AQHGHSRTGLEHFWELLQEGLA-ADDVTMVSTLSACSHGGMLKEG--VQSFLSMVGDHGL 499

Query: 245 SNLVGN--AVINMYVKCGDVGIAIQVFNMLAY-KDKISWSTVISGLAMNG----CGRQAL 297
           +    +   ++++  + G +  A  + + + +  D ++W++++SG  ++       R A 
Sbjct: 500 APDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVAD 559

Query: 298 QLFSL 302
           +LF L
Sbjct: 560 KLFEL 564



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 117/221 (52%), Gaps = 7/221 (3%)

Query: 152 FYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEA 211
            Y +CGS+A    +F  +   N VSWT ++  +A  G  +EA+  ++ M   +   P+ A
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRM-VLEGLRPDGA 59

Query: 212 TLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 271
             V  +  CSS   L  G+ +H+ I     L    ++G A+I MY +C D+ +A + F+ 
Sbjct: 60  MFVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDE 119

Query: 272 LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA---VFPDDVTFIALISACSHGGLV 328
           +  K  ++W+ +I+G + NG  R AL+++  M+  +   + PD +TF + + ACS  G +
Sbjct: 120 MGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDI 179

Query: 329 DQGL-ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            QG  I  + +++ Y     +Q+   +++MY + G LE A 
Sbjct: 180 SQGREIEARTVASGYASDSIVQN--ALINMYSKCGSLESAR 218



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 1/155 (0%)

Query: 255 MYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVT 314
           MY KCG V  A+ VF+ + + + +SW+ +++  A NG  R+AL  +  M++  + PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
           F+  I  CS    + QG +L   +     +   +     ++ MY R   LE A     EM
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 375 PIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNK 409
             +     W AL+     + +     +I QD+V+K
Sbjct: 121 G-KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSK 154



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 99/216 (45%), Gaps = 12/216 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T +  L AC++    ++   +HA +       D+ ++NSL++ Y     +     +F
Sbjct: 365 NEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVF 424

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
            ++    +VSW+T+I+  ++ G  +  ++ F  +    +  +  T+VS LSACS      
Sbjct: 425 AAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSH--GGM 482

Query: 126 LGKAIHAHSLRNLNENNIILDN----AILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTM 180
           L + + +  L  + ++ +  D      ++D   R G L +   L   MP   + V+WT++
Sbjct: 483 LKEGVQSF-LSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSL 541

Query: 181 IGGYAERGFCKEAVSVFQEM-EKTKEAEPNEATLVN 215
           + G       K A  V  ++ E   E E +  TL++
Sbjct: 542 LSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLS 577


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 160/457 (35%), Positives = 256/457 (56%), Gaps = 8/457 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L  C        A+ IH +VI++G   D+F+ N+L++ Y    ++  A + F
Sbjct: 315 NFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAF 374

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHK 125
             +   DVVSW +II+   +      A   F  + +   +P+  TLVS+ S  +     K
Sbjct: 375 QQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCK 434

Query: 126 LGKAIHAHSLRN--LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
             +++H   +R   L E+ +++ NA++D Y + G L S   +F  +P ++V+SW T+I G
Sbjct: 435 NSRSVHGFIMRRGWLMED-VVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITG 493

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           YA+ G   EA+ V++ ME+ KE  PN+ T V++L A + + AL  G  +H  +  + +L 
Sbjct: 494 YAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRV-IKTNLH 552

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           +   V   +I++Y KCG +  A+ +F  +  +  ++W+ +IS   ++G   + L+LF  M
Sbjct: 553 LDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEM 612

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
           +   V PD VTF++L+SACSH G V++G   F+ M   Y I P ++HY C+VD+ GRAG 
Sbjct: 613 LDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLLGRAGY 671

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           LE A  FI++MP++ + S+WGALL ACRIH N E+       L      +VG + L+SN 
Sbjct: 672 LEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNI 731

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +A   +WE  +K+R   R  GLKK  G S IEVN  +
Sbjct: 732 YANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKV 768



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 113/395 (28%), Positives = 202/395 (51%), Gaps = 14/395 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YTF   LKAC      +K   IH    + G   ++F+  SL+H Y        A  +F
Sbjct: 217 DFYTFPPVLKACGTLVDGRK---IHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLF 273

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           + + F D+ SW  +ISGL + G   +A+D+   +    +K N  T+VS+L  C  L    
Sbjct: 274 DDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDIS 333

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
               IH + +++  E ++ + NA+++ Y + G+L      F +M   +VVSW ++I  Y 
Sbjct: 334 TAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYE 393

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +      A   F +M+     +P+  TLV++ S  +        + VH +I  R  L   
Sbjct: 394 QNDDPVTAHGFFVKMQ-LNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMED 452

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM-I 304
            ++GNAV++MY K G +  A +VF ++  KD ISW+T+I+G A NG   +A++++ +M  
Sbjct: 453 VVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEE 512

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY--ACVVDMYGRAG 362
              + P+  T+++++ A +H G + QG+   K    V +    +  +   C++D+YG+ G
Sbjct: 513 CKEIIPNQGTWVSILPAYAHVGALQQGM---KIHGRVIKTNLHLDVFVATCLIDVYGKCG 569

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
            L +A +   ++P E+    W A+++   IH + E
Sbjct: 570 RLVDAMSLFYQVPQESS-VTWNAIISCHGIHGHAE 603



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 173/373 (46%), Gaps = 32/373 (8%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           +HA ++  G +  IFI   L++ Y  + D+  +   F+ +   DV +W ++IS     G 
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGH 197

Query: 92  HKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
             EAI  F  +    +++P+  T   VL AC +LV    G+ IH  + +   + N+ +  
Sbjct: 198 FHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFVAA 254

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           +++  Y R G       LF  MP R++ SW  MI G  + G   +A+ V  EM + +  +
Sbjct: 255 SLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEM-RLEGIK 313

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
            N  T+V++L  C  +  +S    +H Y+  ++ L     V NA+INMY K G++  A +
Sbjct: 314 MNFVTVVSILPVCPQLGDISTAMLIHLYV-IKHGLEFDLFVSNALINMYAKFGNLEDARK 372

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS---- 323
            F  +   D +SW+++I+    N     A   F  M +N   PD +T ++L S  +    
Sbjct: 373 AFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRD 432

Query: 324 -------HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPI 376
                  HG ++ +G ++   +               VVDMY + GLL+ A      +P+
Sbjct: 433 CKNSRSVHGFIMRRGWLMEDVVIG-----------NAVVDMYAKLGLLDSAHKVFEIIPV 481

Query: 377 EAEWSVWGALLNA 389
           +   S W  L+  
Sbjct: 482 KDVIS-WNTLITG 493



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 133/276 (48%), Gaps = 16/276 (5%)

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
             K +HA  +      +I +   +++ Y   G ++     F ++P+++V +W +MI  Y 
Sbjct: 134 FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYV 193

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G   EA+  F ++    E  P+  T   VL AC +   L  G+ +H + + +     +
Sbjct: 194 HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGT---LVDGRKIHCW-AFKLGFQWN 249

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V  ++I+MY + G  GIA  +F+ + ++D  SW+ +ISGL  NG   QAL +   M +
Sbjct: 250 VFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRL 309

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV----VDMYGRA 361
             +  + VT ++++  C   G +   +++      +Y I   ++    V    ++MY + 
Sbjct: 310 EGIKMNFVTVVSILPVCPQLGDISTAMLIH-----LYVIKHGLEFDLFVSNALINMYAKF 364

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
           G LE+A    ++M I    S W +++ A    +ND+
Sbjct: 365 GNLEDARKAFQQMFITDVVS-WNSIIAA--YEQNDD 397


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 150/437 (34%), Positives = 252/437 (57%), Gaps = 10/437 (2%)

Query: 32  IHAHVIEYGHLHD----IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS 87
           +HA+ +    LHD    + +  +LL  Y     +  A ++F ++   + V+W+ ++ G  
Sbjct: 251 VHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFV 310

Query: 88  KCGFHKEAIDMFCGIDVKP----NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNI 143
            CG   EA  +F  +  +     +  ++ S L AC++L    LGK +HA   ++    ++
Sbjct: 311 LCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDL 370

Query: 144 ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
              N++L  Y + G +     LF +M  ++ VS++ ++ GY + G   EA  VF++M+  
Sbjct: 371 TAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQAC 430

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
              +P+ AT+V+++ ACS ++AL  GK  H  +  R  ++    + NA+I+MY KCG + 
Sbjct: 431 -NVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVR-GIASETSICNALIDMYAKCGRID 488

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
           ++ Q+F+++  +D +SW+T+I+G  ++G G++A  LF  M   A  PDDVTFI LISACS
Sbjct: 489 LSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACS 548

Query: 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 383
           H GLV +G   F  M+  Y I P+M+HY  +VD+  R G L+EA  FI+ MP++A+  VW
Sbjct: 549 HSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVW 608

Query: 384 GALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443
           GALL ACR+H+N ++  ++   +        G F L+SN F+ A R+++  ++R   +  
Sbjct: 609 GALLGACRVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQ 668

Query: 444 GLKKKTGCSWIEVNPSI 460
           G KK  GCSWIE+N S+
Sbjct: 669 GFKKSPGCSWIEINGSL 685



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 199/396 (50%), Gaps = 19/396 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N+YTF   LKACS     + A  +H H    G   D+F+  +L+  Y        A  +F
Sbjct: 128 NNYTFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVF 187

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAID--MFCGIDVKPNANTLVSVLSACSSLVSHKL 126
             +   DVV+W  +++G +  G + + I   +    D  PNA+TLV++L   +   +   
Sbjct: 188 RRMPARDVVAWNAMLAGYALHGKYSDTIACLLLMQDDHAPNASTLVALLPLLAQHGALSQ 247

Query: 127 GKAIHAHSLR----NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
           G+A+HA+S+R    + +++ +++  A+LD Y +CG L     +F  M  RN V+W+ ++G
Sbjct: 248 GRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVG 307

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
           G+   G   EA S+F++M        +  ++ + L AC+++S L  GK +H+ ++ +  L
Sbjct: 308 GFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLA-KSGL 366

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
                 GN++++MY K G +  A  +F+ +  KD +S+S ++SG   NG   +A ++F  
Sbjct: 367 HTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRK 426

Query: 303 MIINAVFPDDVTFIALISACSH-----GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
           M    V PD  T ++LI ACSH      G    G ++ + +++   I   +      +DM
Sbjct: 427 MQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNAL------IDM 480

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           Y + G ++ +      MP     S W  ++    IH
Sbjct: 481 YAKCGRIDLSRQIFDVMPARDIVS-WNTMIAGYGIH 515



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 176/365 (48%), Gaps = 22/365 (6%)

Query: 53  HFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG---FHKEAIDMFCGIDVKPNAN 109
           H  +   D+  A  +F+ +  P +  +  +I   S  G     +    +      +PN  
Sbjct: 71  HNRMICGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNY 130

Query: 110 TLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKM 169
           T   VL ACS+L+  +  +A+H H+ R     ++ +  A++D Y +C S      +F +M
Sbjct: 131 TFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRM 190

Query: 170 PKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 229
           P R+VV+W  M+ GYA  G   + ++    M+   +  PN +TLV +L   +   ALS G
Sbjct: 191 PARDVVAWNAMLAGYALHGKYSDTIACLLLMQ--DDHAPNASTLVALLPLLAQHGALSQG 248

Query: 230 KYVHSYISTR----YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285
           + VH+Y S R    +D     LVG A+++MY KCG +  A +VF  +A +++++WS ++ 
Sbjct: 249 RAVHAY-SVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVG 307

Query: 286 GLAMNGCGR--QALQLFSLMIINAV-FPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 342
           G  +  CGR  +A  LF  M+   + F    +  + + AC++  L D  L L K +  + 
Sbjct: 308 GFVL--CGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACAN--LSD--LCLGKQLHALL 361

Query: 343 E---IVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMF 399
               +   +     ++ MY +AGL+++A     +M ++   S    +    +  + DE F
Sbjct: 362 AKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAF 421

Query: 400 DRIRQ 404
              R+
Sbjct: 422 RVFRK 426


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 148/452 (32%), Positives = 262/452 (57%), Gaps = 10/452 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T+++ +K C       +   I  H+   GH   +F+ N L++ YV    +  AHQ+F+ +
Sbjct: 63  TYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQM 122

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              +V+SWTT+IS  SKC  H++A+++   +   +V+PN  T  SVL +C+ +   ++  
Sbjct: 123 PQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM-- 180

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H   ++   E+++ + +A++D + + G       +F +M   + + W ++IGG+A+  
Sbjct: 181 -LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNS 239

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
               A+ +F+ M++       +ATL +VL AC+ ++ L  G   H +I  +YD  +  ++
Sbjct: 240 RSDVALELFKRMKRAGFI-AEQATLTSVLRACTGLALLELGMQAHVHI-VKYDQDL--IL 295

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            NA+++MY KCG +  A++VFN +  +D I+WST+ISGLA NG  ++AL+LF  M  +  
Sbjct: 296 NNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGT 355

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            P+ +T + ++ ACSH GL++ G   F++M  +Y I P  +HY C++D+ G+AG L++A 
Sbjct: 356 KPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAV 415

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
             + EM  E +   W  LL ACR+ RN  + +   + ++       GT+ L+SN +A + 
Sbjct: 416 KLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQ 475

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +W+   +IR  +R  G+KK+ GCSWIEVN  I
Sbjct: 476 KWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQI 507



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 159/342 (46%), Gaps = 19/342 (5%)

Query: 58  VKDIFSAHQIFNSVVFPDV----VSWTTIISGLSKCGFHKE------AIDMFCGIDVKPN 107
           +K + S  ++F  VV           T ++S  ++  + ++      A+D      +  +
Sbjct: 1   MKSVMSKIKLFRPVVTLRCSYSSTDQTLLLSEFTRLCYQRDLPRAMKAMDSLQSHGLWAD 60

Query: 108 ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFV 167
           + T   ++  C S  +   G  I  H   N +   + L N +++ Y++   L     LF 
Sbjct: 61  SATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFD 120

Query: 168 KMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 227
           +MP+RNV+SWTTMI  Y++    ++A+ +   M +     PN  T  +VL +C+ +S + 
Sbjct: 121 QMPQRNVISWTTMISAYSKCKIHQKALELLVLMLR-DNVRPNVYTYSSVLRSCNGMSDV- 178

Query: 228 FGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGL 287
             + +H  I  +  L     V +A+I+++ K G+   A+ VF+ +   D I W+++I G 
Sbjct: 179 --RMLHCGI-IKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGF 235

Query: 288 AMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 347
           A N     AL+LF  M       +  T  +++ AC+   L++ G+   +A   + +    
Sbjct: 236 AQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGM---QAHVHIVKYDQD 292

Query: 348 MQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           +     +VDMY + G LE+A     +M  E +   W  +++ 
Sbjct: 293 LILNNALVDMYCKCGSLEDALRVFNQMK-ERDVITWSTMISG 333


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 148/452 (32%), Positives = 262/452 (57%), Gaps = 10/452 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T+++ +K C       +   I  H+   GH   +F+ N L++ YV    +  AHQ+F+ +
Sbjct: 63  TYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQM 122

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              +V+SWTT+IS  SKC  H++A+++   +   +V+PN  T  SVL +C+ +   ++  
Sbjct: 123 PQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM-- 180

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H   ++   E+++ + +A++D + + G       +F +M   + + W ++IGG+A+  
Sbjct: 181 -LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNS 239

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
               A+ +F+ M++       +ATL +VL AC+ ++ L  G   H +I  +YD  +  ++
Sbjct: 240 RSDVALELFKRMKRAGFI-AEQATLTSVLRACTGLALLELGMQAHVHI-VKYDQDL--IL 295

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            NA+++MY KCG +  A++VFN +  +D I+WST+ISGLA NG  ++AL+LF  M  +  
Sbjct: 296 NNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGT 355

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            P+ +T + ++ ACSH GL++ G   F++M  +Y I P  +HY C++D+ G+AG L++A 
Sbjct: 356 KPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAV 415

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
             + EM  E +   W  LL ACR+ RN  + +   + ++       GT+ L+SN +A + 
Sbjct: 416 KLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQ 475

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +W+   +IR  +R  G+KK+ GCSWIEVN  I
Sbjct: 476 KWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQI 507



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 159/342 (46%), Gaps = 19/342 (5%)

Query: 58  VKDIFSAHQIFNSVVFPDV----VSWTTIISGLSKCGFHKE------AIDMFCGIDVKPN 107
           +K + S  ++F  VV           T ++S  ++  + ++      A+D      +  +
Sbjct: 1   MKSVMSKIKLFRPVVTLRCSYSSTDQTLLLSEFTRLCYQRDLPRAMKAMDSLQSHGLWAD 60

Query: 108 ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFV 167
           + T   ++  C S  +   G  I  H   N +   + L N +++ Y++   L     LF 
Sbjct: 61  SATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFD 120

Query: 168 KMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 227
           +MP+RNV+SWTTMI  Y++    ++A+ +   M +     PN  T  +VL +C+ +S + 
Sbjct: 121 QMPQRNVISWTTMISAYSKCKIHQKALELLVLMLR-DNVRPNVYTYSSVLRSCNGMSDV- 178

Query: 228 FGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGL 287
             + +H  I  +  L     V +A+I+++ K G+   A+ VF+ +   D I W+++I G 
Sbjct: 179 --RMLHCGI-IKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGF 235

Query: 288 AMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 347
           A N     AL+LF  M       +  T  +++ AC+   L++ G+   +A   + +    
Sbjct: 236 AQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGM---QAHVHIVKYDQD 292

Query: 348 MQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           +     +VDMY + G LE+A     +M  E +   W  +++ 
Sbjct: 293 LILNNALVDMYCKCGSLEDALRVFNQMK-ERDVITWSTMISG 333


>gi|224123200|ref|XP_002330363.1| predicted protein [Populus trichocarpa]
 gi|222871567|gb|EEF08698.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 156/439 (35%), Positives = 251/439 (57%), Gaps = 8/439 (1%)

Query: 29  ALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           A+  HA++ ++G L+D    N LL+ Y+  + I  AH +F+ +  P+VVSWT+++SG   
Sbjct: 25  AISTHANLFKFGLLNDTITTNHLLNSYLRFRRIQYAHHLFDEMHEPNVVSWTSLMSGYVN 84

Query: 89  CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
            G  + A+ ++  +   +V PN  TL +V+++CS L   K GK +HAH      + N+++
Sbjct: 85  MGRPQSALWLYTKMSESEVSPNGFTLATVINSCSILADLKTGKMVHAHVQILGLQGNLVV 144

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            ++++D Y +C  +     +F  M  RNVVSWT MI GYA+ G   EA+ VF+E      
Sbjct: 145 CSSLVDMYGKCNDVDGARMVFDSMSCRNVVSWTAMIAGYAQNGKGYEALEVFREFSSYMM 204

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
             PN   L +V++AC+S+  L  GK  H  +  R    ++++V +A+++MY KCG    +
Sbjct: 205 ERPNHFMLASVINACASLGRLVSGKVTHGAV-IRGGYELNDVVASALVDMYAKCGSFLYS 263

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
            +VF  +     I ++++I G A  G G+ +L LF  M    V P+DVTF+ ++ ACSH 
Sbjct: 264 EKVFRRIRNPSVIPYTSMIVGAAKYGLGKLSLNLFEEMTDRKVMPNDVTFVGILHACSHS 323

Query: 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAF---IREMPIEAEWSV 382
           GLVD+GL L  +M   + ++P ++HY CVVDM  R G L+EA      IR  P E    +
Sbjct: 324 GLVDEGLRLLNSMHEKHGVMPDVRHYTCVVDMLSRVGRLDEAYKLAKSIRVNPNEGAL-L 382

Query: 383 WGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442
           WG LL++ R+H   +M     + L+       G +  +SNT+  A  WE+ + +R E+  
Sbjct: 383 WGTLLSSSRLHGRVDMAVEASKWLIEYNQQVAGAYVTLSNTYTLAGEWENAHSLRTEMEL 442

Query: 443 MGLKKKTGCSWIEVNPSIF 461
           +G+ K+ GCSWIE+  SI+
Sbjct: 443 VGVHKEPGCSWIEIKDSIY 461



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 148/292 (50%), Gaps = 8/292 (2%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S N +T    + +CS+    +    +HAHV   G   ++ + +SL+  Y    D+  A  
Sbjct: 104 SPNGFTLATVINSCSILADLKTGKMVHAHVQILGLQGNLVVCSSLVDMYGKCNDVDGARM 163

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV----KPNANTLVSVLSACSSLV 122
           +F+S+   +VVSWT +I+G ++ G   EA+++F         +PN   L SV++AC+SL 
Sbjct: 164 VFDSMSCRNVVSWTAMIAGYAQNGKGYEALEVFREFSSYMMERPNHFMLASVINACASLG 223

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
               GK  H   +R   E N ++ +A++D Y +CGS      +F ++   +V+ +T+MI 
Sbjct: 224 RLVSGKVTHGAVIRGGYELNDVVASALVDMYAKCGSFLYSEKVFRRIRNPSVIPYTSMIV 283

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
           G A+ G  K ++++F+EM   K   PN+ T V +L ACS    +  G  + + +  ++ +
Sbjct: 284 GAAKYGLGKLSLNLFEEMTDRK-VMPNDVTFVGILHACSHSGLVDEGLRLLNSMHEKHGV 342

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY---KDKISWSTVISGLAMNG 291
                    V++M  + G +  A ++   +     +  + W T++S   ++G
Sbjct: 343 MPDVRHYTCVVDMLSRVGRLDEAYKLAKSIRVNPNEGALLWGTLLSSSRLHG 394


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 145/387 (37%), Positives = 235/387 (60%), Gaps = 33/387 (8%)

Query: 101 GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLA 160
           G  VKPN  TL +V+ AC+S+ S + GK  H + ++   E+++++  A++  Y RCGSL 
Sbjct: 3   GKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLE 62

Query: 161 SCGY-------------------------------LFVKMPKRNVVSWTTMIGGYAERGF 189
             G+                               LF +M +R+VVSWT +I GYA+ G+
Sbjct: 63  DAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGY 122

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
             E+++VF +M KT   + +   + +VLSAC+ ++AL  G+  H+Y+  +   ++  +VG
Sbjct: 123 GDESLNVFNQMRKTG-MKSDRFIMGSVLSACADLAALELGRQFHAYV-VQSGFALDIVVG 180

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
           +A+++MY K G +  A QVF+ +  ++++SW+++I+G A +G G  A+ LF  M+   + 
Sbjct: 181 SALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIK 240

Query: 310 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEA 369
           P++++F+ ++SACSH GLV++G   F  M+  Y IVP + HY C++D+ GRAG L+EAE 
Sbjct: 241 PNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAEN 300

Query: 370 FIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADR 429
           FI  MP+E + SVWGALL ACRIH N E+  RI + L+  +    G + L+SN +A A +
Sbjct: 301 FINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQ 360

Query: 430 WEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           W+D  K+R  ++  G+ K+ G SWIEV
Sbjct: 361 WDDAAKVRKLMKDRGVMKQPGYSWIEV 387



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 160/318 (50%), Gaps = 36/318 (11%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV---------- 58
           N +T +  +KAC+     ++  + H ++I+ G   D+ +Q +L+H Y             
Sbjct: 9   NQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHVF 68

Query: 59  ---------------------KDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAID 97
                                +D+  A ++F  +   DVVSWT +I+G ++ G+  E+++
Sbjct: 69  DKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLN 128

Query: 98  MFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
           +F  +    +K +   + SVLSAC+ L + +LG+  HA+ +++    +I++ +A++D Y 
Sbjct: 129 VFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYA 188

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           + GS+     +F KMP+RN VSW ++I G A+ G   +AV +F++M +    +PNE + V
Sbjct: 189 KSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAG-IKPNEISFV 247

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
            VLSACS    ++ G+   + ++  Y +         +I++  + G +  A    N +  
Sbjct: 248 GVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPV 307

Query: 275 KDKIS-WSTVISGLAMNG 291
           +  +S W  ++    ++G
Sbjct: 308 EPDVSVWGALLGACRIHG 325


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 163/487 (33%), Positives = 258/487 (52%), Gaps = 41/487 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLH-DIFIQNSLLHFYVTVKDIFSAHQI 67
           N  T   A+ AC+     +   EIH + I+   L  D+ + NSL+ +Y   + +  A + 
Sbjct: 361 NSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRK 420

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDM-----FCGID------------------- 103
           F  +   D+VSW  +++G +  G H+EAI++     F GI+                   
Sbjct: 421 FGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDG 480

Query: 104 --------------VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAI 149
                         + PN  T+   L+AC  + + KLGK IH + LRN  E +  + +A+
Sbjct: 481 KAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSAL 540

Query: 150 LDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN 209
           +  Y  C SL     +F ++  R+VV W ++I   A+ G    A+ + +EM  +   E N
Sbjct: 541 ISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSN-VEVN 599

Query: 210 EATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF 269
             T+V+ L ACS ++AL  GK +H +I  R  L   N + N++I+MY +CG +  + ++F
Sbjct: 600 TVTMVSALPACSKLAALRQGKEIHQFI-IRCGLDTCNFILNSLIDMYGRCGSIQKSRRIF 658

Query: 270 NMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVD 329
           +++  +D +SW+ +IS   M+G G  A+ LF       + P+ +TF  L+SACSH GL++
Sbjct: 659 DLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGLIE 718

Query: 330 QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           +G   FK M T Y + P ++ YAC+VD+  RAG   E   FI +MP E   +VWG+LL A
Sbjct: 719 EGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGA 778

Query: 390 CRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKT 449
           CRIH N ++ +   + L   +  S G + LM+N ++ A RWED  KIR  ++  G+ K  
Sbjct: 779 CRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPP 838

Query: 450 GCSWIEV 456
           GCSWIEV
Sbjct: 839 GCSWIEV 845



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 182/363 (50%), Gaps = 51/363 (14%)

Query: 74  PDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAI 130
           P+VVSWT +I+G  + G+  EA+ +F  +    VKPN+ T+ S +SAC++L   + G+ I
Sbjct: 325 PNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREI 384

Query: 131 HAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           H + ++    ++++++ N+++D+Y +C S+      F  + + ++VSW  M+ GYA RG 
Sbjct: 385 HGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGS 444

Query: 190 CKEAVSVFQEME----------------------------------KTKEAEPNEATLVN 215
            +EA+ +  EM+                                   +   +PN  T+  
Sbjct: 445 HEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISG 504

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
            L+AC  +  L  GK +H Y+  R  + +S  VG+A+I+MY  C  + +A  VF+ L+ +
Sbjct: 505 ALAACGQVRNLKLGKEIHGYV-LRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTR 563

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG---- 331
           D + W+++IS  A +G    AL L   M ++ V  + VT ++ + ACS    + QG    
Sbjct: 564 DVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIH 623

Query: 332 -LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 390
             I+   + T   I+  +      +DMYGR G ++++      MP + +   W  +++  
Sbjct: 624 QFIIRCGLDTCNFILNSL------IDMYGRCGSIQKSRRIFDLMP-QRDLVSWNVMISVY 676

Query: 391 RIH 393
            +H
Sbjct: 677 GMH 679



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 161/338 (47%), Gaps = 38/338 (11%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +H+ F +  KACS    ++   +++ +++  G   +  ++ S+L  ++    +  A + F
Sbjct: 189 DHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFF 248

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
             + F DV  W  ++SG +  G  K+A+                               K
Sbjct: 249 EEIEFKDVFMWNIMVSGYTSKGEFKKAL-------------------------------K 277

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-----KRNVVSWTTMIGG 183
            I    L  +  + +   NAI+  Y + G        F++M      K NVVSWT +I G
Sbjct: 278 CISDMKLSGVKPDQVTW-NAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAG 336

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
             + G+  EA+SVF++M   +  +PN  T+ + +SAC+++S L  G+ +H Y     +L 
Sbjct: 337 SEQNGYDFEALSVFRKM-VLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELD 395

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
              LVGN++++ Y KC  V +A + F M+   D +SW+ +++G A+ G   +A++L S M
Sbjct: 396 SDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEM 455

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 341
               + PD +T+  L++  +  G     L  F+ M ++
Sbjct: 456 KFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSM 493



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 131/266 (49%), Gaps = 2/266 (0%)

Query: 113 SVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKR 172
           S+L  C  L + +LG  +HA  + N  +    L + +L+ Y + G +     +F KM +R
Sbjct: 94  SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSER 153

Query: 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYV 232
           NV SWT ++  Y   G  +E + +F  M   +   P+      V  ACS +     GK V
Sbjct: 154 NVFSWTAIMEMYCGLGDYEETIKLFYLM-VNEGVRPDHFVFPKVFKACSELKNYRVGKDV 212

Query: 233 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
           + Y+ +      ++ V  ++++M++KCG + IA + F  + +KD   W+ ++SG    G 
Sbjct: 213 YDYMLS-IGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGE 271

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
            ++AL+  S M ++ V PD VT+ A+IS  +  G  ++    F  M  + +  P +  + 
Sbjct: 272 FKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWT 331

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEA 378
            ++    + G   EA +  R+M +E 
Sbjct: 332 ALIAGSEQNGYDFEALSVFRKMVLEG 357


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 167/484 (34%), Positives = 256/484 (52%), Gaps = 44/484 (9%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           + F   L    L H      ++HAH++  G      + + ++ FY +  DI S+  +FN 
Sbjct: 77  FQFLTGLNMLKLGH------QVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNG 130

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLG 127
           +  P  + + ++I   ++ GF +  +  +  +       +  T   VL +   L+S  +G
Sbjct: 131 IGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMG 190

Query: 128 KAIHAHSLR---------------------NLNENNIILDN----------AILDFYIRC 156
           K +H   LR                      +N+   + DN          A+L  Y + 
Sbjct: 191 KCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKS 250

Query: 157 GSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA-EPNEATLVN 215
           G + +   +F +MP RN+VSWTTMI GY++ G  ++A+S+F EM K      PN  T+++
Sbjct: 251 GCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMS 310

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           VL AC+ +S L  G+ +H  ++ R  L+ +  V  A+  MY KCG +  A   F+ L   
Sbjct: 311 VLPACAQLSTLERGRQIHE-LACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRN 369

Query: 276 DK--ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI 333
           +K  I+W+T+I+  A  G G QA+  F  MI   + PDD+TF  L+S CSH GLVD GL 
Sbjct: 370 EKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLK 429

Query: 334 LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
            F  MST Y I P+++HYACV D+ GRAG L EA   + EMP+ A  S+WG+LL ACR H
Sbjct: 430 YFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKH 489

Query: 394 RNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSW 453
           RN EM +   + L   +  + G + L+SN +A A RW++ +K+R  ++  G KK  GCSW
Sbjct: 490 RNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSW 549

Query: 454 IEVN 457
           IE+N
Sbjct: 550 IEIN 553


>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 165/453 (36%), Positives = 251/453 (55%), Gaps = 8/453 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +TF   +K+C      ++  E+H    ++G   + F+  SL+  Y     +  A+++F
Sbjct: 109 NCFTFPMIIKSCGKLEGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVF 168

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
             +   +VV WT II+G   CG       +F   D+ P  + ++  +     + S  +  
Sbjct: 169 GEMHERNVVVWTAIINGYILCGDVVSGRRLF---DLAPERDVVMWSVLISGYIESKNMAA 225

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
           A        +   + +  NA+L+ Y   G +     +F +MP+RNV SW  +IGGY + G
Sbjct: 226 A--RELFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNG 283

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSVSNL 247
              E +  F+ M       PN+ TLV VLSACS + AL  GK+VH Y  S  Y  ++   
Sbjct: 284 LFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNL--F 341

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           VGN +I+MY KCG +  A+ VFN L  KD ISW+T+I+GLA++G    AL +F  M    
Sbjct: 342 VGNVLIDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEG 401

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
             PD VTF+ ++SAC+H GLV  G + FK+M   Y IVPQ++HY C+VD+ GRAGLL++A
Sbjct: 402 EEPDGVTFVGILSACTHMGLVKDGFLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQA 461

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
             FIR+MPIE +  +W ALL ACR+++N E+ +   Q L+  +  +   F ++SN +   
Sbjct: 462 LNFIRKMPIEPDAVIWAALLGACRLYKNVEIAELALQRLIELEPNNPANFVMVSNIYKDL 521

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            R ED  +++  +R  G +K  GCS IE N S+
Sbjct: 522 GRSEDVARLKIAMRDTGFRKLPGCSVIECNDSV 554



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 195/411 (47%), Gaps = 27/411 (6%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           F   L++C     +++  +I A ++ +G  H+ F+  + +      K I  A ++F+ + 
Sbjct: 15  FITLLRSCK---NYERLHQIQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFDKIP 71

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHKLGKA 129
            P+  +W  +  G  + G H++ + +F  ++     PN  T   ++ +C  L   + G+ 
Sbjct: 72  QPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVREGEE 131

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           +H  + ++  ++N  +  +++D Y + G +     +F +M +RNVV WT +I GY     
Sbjct: 132 VHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIINGYI---L 188

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVL-SACSSISALSFGKYVHSYISTRYDLSVSNLV 248
           C + VS  +  +   E    +  + +VL S       ++  + +   +  R  +S     
Sbjct: 189 CGDVVSGRRLFDLAPE---RDVVMWSVLISGYIESKNMAAARELFDKMPNRDTMS----- 240

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA- 307
            NA++N Y   G+V +  +VF+ +  ++  SW+ +I G   NG   + L+ F  M++   
Sbjct: 241 WNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGH 300

Query: 308 VFPDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
           V P+D T +A++SACS  G +D G  +   A S  Y+    +     ++DMY + G++E 
Sbjct: 301 VIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYK--GNLFVGNVLIDMYAKCGVIEN 358

Query: 367 AEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDRIRQDLVNKKGVS 413
           A      +  +   S W  ++N   IH +      MFDR++ +     GV+
Sbjct: 359 AVVVFNCLDRKDIIS-WNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVT 408


>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 2000

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 162/518 (31%), Positives = 270/518 (52%), Gaps = 68/518 (13%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  TFT  ++AC+        + +   +++ G+ HD+ + NSL+   + + +I  A ++F
Sbjct: 183 NKVTFTSVVRACANLGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVF 242

Query: 69  NSVVFPDVVSWTTI-------------------------------ISGLSKCGFHKEAID 97
           + +   DVVSWT I                               I+   + G+ +E++ 
Sbjct: 243 DRMEEKDVVSWTAILDLYVEMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLR 302

Query: 98  MFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
           +FC +     KPN +   S+LSA +S+ + + G  IH H  +   E ++ + ++++D Y 
Sbjct: 303 LFCRMIQEGFKPNISCFSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYC 362

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA--------------------- 193
           +CG      +LF  + ++N+VSW  M+GGY+  G  +EA                     
Sbjct: 363 KCGETKDGRFLFDTILEKNMVSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAG 422

Query: 194 ----------VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
                       VF EM    E  PN++T  ++L AC+S ++L  GK +H  I  +  + 
Sbjct: 423 HLDCEQFDEMFEVFNEMILLGEI-PNKSTFSSLLCACASTASLDKGKNLHGKI-VKLGIQ 480

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
               VG A+ +MY K GD+  + +VFN +  K+++SW+ +I GLA +G   ++L LF  M
Sbjct: 481 CDTYVGTALTDMYAKSGDIESSKKVFNRMPKKNEVSWTAMIQGLAESGLAEESLTLFEEM 540

Query: 304 -IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
              +++ P++V F+A++ ACSH GLVD+GL  F +M  VY + P+ +H+ CVVDM  RAG
Sbjct: 541 EKTSSIAPNEVMFLAVLFACSHSGLVDKGLWYFNSMEAVYGLKPKGRHFTCVVDMLSRAG 600

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSN 422
            L EAE FI  MP + E + W ALL+ C+ ++N+E+ +R+   L      +   + L+SN
Sbjct: 601 RLFEAEEFIYSMPFQPETNAWAALLSGCKTYKNEELAERVAGKLWEMAEKNCAGYVLLSN 660

Query: 423 TFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            +A A RW D  K+R  ++  GLKK  GCSW+E+   +
Sbjct: 661 IYASAGRWRDVLKVRKLMKAKGLKKSGGCSWVEIRDRV 698



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 176/388 (45%), Gaps = 71/388 (18%)

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSH 124
           F    F +VVSWT  ISG  + GF  EA+ +F  +   +VKPN  T  SV+ AC++L   
Sbjct: 141 FERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDF 200

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
            LG ++    ++   E+++ + N+++   +R G +     +F +M +++VVSWT ++  Y
Sbjct: 201 GLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLY 260

Query: 185 AERGFCKEAVSVFQEMEKTKEA------------------------------EPNEATLV 214
            E     EA  +F EM +  E                               +PN +   
Sbjct: 261 VEMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFS 320

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
           ++LSA +S+ AL  G  +H ++ T+        V +++I+MY KCG+      +F+ +  
Sbjct: 321 SILSALASVEALQAGMNIHGHV-TKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILE 379

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSL-------------------------------M 303
           K+ +SW+ ++ G ++NG   +A  LF++                               M
Sbjct: 380 KNMVSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEM 439

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY--ACVVDMYGRA 361
           I+    P+  TF +L+ AC+    +D+G  L      + ++  Q   Y    + DMY ++
Sbjct: 440 ILLGEIPNKSTFSSLLCACASTASLDKGKNLH---GKIVKLGIQCDTYVGTALTDMYAKS 496

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNA 389
           G +E ++     MP + E S W A++  
Sbjct: 497 GDIESSKKVFNRMPKKNEVS-WTAMIQG 523



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 85/387 (21%), Positives = 168/387 (43%), Gaps = 71/387 (18%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           +HAH+ + G   + +I   LL  Y+  +    A QI       D+V    +IS   + G 
Sbjct: 43  LHAHLFKTGISSEQYISIKLLIMYLNYRKSAEADQISKDFDGFDLVVHNCMISANVQRGN 102

Query: 92  HKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILD 151
             EA  +F   D  P  N +                                    A++ 
Sbjct: 103 LDEARKLF---DEMPQTNEISWT---------------------------------ALIS 126

Query: 152 FYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEA 211
            +++ G +    + F + P +NVVSWT  I GY + GF  EA+ +F ++ ++ E +PN+ 
Sbjct: 127 GFMKYGRVRESMWYFERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLES-EVKPNKV 185

Query: 212 TLVNVLSACSSISALSFGKYVHSYI---STRYDLSVSN---------------------- 246
           T  +V+ AC+++     G  V   I      +DL+VSN                      
Sbjct: 186 TFTSVVRACANLGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRM 245

Query: 247 -----LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
                +   A++++YV+  ++G A ++F+ +  ++++SWS +I+    +G   ++L+LF 
Sbjct: 246 EEKDVVSWTAILDLYVEMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFC 305

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV-YEIVPQMQHYACVVDMYGR 360
            MI     P+   F +++SA +    +  G+ +   ++ + +E    +   + ++DMY +
Sbjct: 306 RMIQEGFKPNISCFSSILSALASVEALQAGMNIHGHVTKIGFE--KDVFVSSSLIDMYCK 363

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALL 387
            G  ++   F+ +  +E     W A++
Sbjct: 364 CGETKDGR-FLFDTILEKNMVSWNAMV 389


>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 719

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 156/450 (34%), Positives = 251/450 (55%), Gaps = 9/450 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           NHYTF   +K C          +IHA ++++G   D+F++NSL+H Y     I  A  +F
Sbjct: 158 NHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAMF 217

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
                 D+V+W ++I G  K G    A ++F   +  P  + L S  S  +  V +  G 
Sbjct: 218 EVCSISDLVTWNSMIDGYVKNGEIGAARELF---EEMPERD-LFSWNSMIAGYVGN--GD 271

Query: 129 AIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
              A  L N +   +I+  N ++D Y +  ++     LF  MP RNVVSW  M+  Y   
Sbjct: 272 MTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRI 331

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
               E + +F +M    E  PNEATLV+VL+AC+ +  L  GK++HSYI     +    L
Sbjct: 332 KDYDECLRMFDKM--MGETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVL 389

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           +  A++ MY KCG + +A  VF+ ++ +  +SW+++I G  M+G   +AL++F  M    
Sbjct: 390 LSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRG 449

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
             P+D TFI ++SAC+H G++ +G   F  M   Y+I P+++HY C+VD+ GRAGL+++ 
Sbjct: 450 PMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDL 509

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
           E  IR+MP+E   ++WGALL+ACR H N E+ + + + L+  +   +G + L+SN +A  
Sbjct: 510 EELIRKMPMEGGTALWGALLSACRTHSNSELAEIVAKRLIELEPRDIGPYLLLSNIYAAE 569

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            +W+D   +R  ++  GL K TG SW+ + 
Sbjct: 570 GKWDDVEIVRKMMKERGLTKTTGFSWVHIE 599



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 161/380 (42%), Gaps = 35/380 (9%)

Query: 15  QALKACSLAHPHQKALE-----------IHAHVIEYGHLHDIFIQNSLLHFYVTVKD-IF 62
           Q L    L+HP  + LE           IH  +I  G L         +    +  D + 
Sbjct: 50  QPLPILKLSHPILRTLESCCGSTKEFNQIHTQLIVSGLLQQPLAAGRAVKTLCSFPDSVQ 109

Query: 63  SAHQIFNSVVFPDVVSWTTII-------SGLSKCGFHKEAIDMFCGIDVKPNANTLVSVL 115
            A  +F  +  PD     TI+          +  GF+ E +   C   V PN  T   ++
Sbjct: 110 HAVSLFEGLEEPDAFICNTIMRTYVNVNDPYTALGFYYEQMVRKC---VAPNHYTFPLLV 166

Query: 116 SACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVV 175
             C  + S   G+ IHA  L+   E ++ + N+++  Y  CG +     +F      ++V
Sbjct: 167 KVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLV 226

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           +W +MI GY + G    A  +F+EM +      N      V +   + +   F K     
Sbjct: 227 TWNSMIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYVGNGDMTAAEDLFNK----- 281

Query: 236 ISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
                 +   ++V  N +I+ Y +  ++ IA ++FN + Y++ +SW+ +++         
Sbjct: 282 ------MPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYD 335

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
           + L++F  M +    P++ T +++++AC+H G +D+G  +   +     I P +     +
Sbjct: 336 ECLRMFDKM-MGETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTAL 394

Query: 355 VDMYGRAGLLEEAEAFIREM 374
           + MY + G ++ A     +M
Sbjct: 395 LTMYAKCGAMDLARDVFDKM 414



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 98/215 (45%), Gaps = 17/215 (7%)

Query: 193 AVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAV 252
           A+  + E    K   PN  T   ++  C  I ++  G+ +H+ I  ++   +   V N++
Sbjct: 142 ALGFYYEQMVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARI-LKFGFELDLFVRNSL 200

Query: 253 INMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD 312
           I+MY  CG +G A  +F + +  D ++W+++I G   NG    A +LF  M    +F   
Sbjct: 201 IHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLF--- 257

Query: 313 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIR 372
            ++ ++I+     G +     LF  M    +IV     + C++D Y +   +E A     
Sbjct: 258 -SWNSMIAGYVGNGDMTAAEDLFNKMP-FRDIV----SWNCMIDGYAQVQNMEIACELFN 311

Query: 373 EMPIE--AEWSVWGALLNACRIHRNDE---MFDRI 402
            MP      W++  AL    RI   DE   MFD++
Sbjct: 312 WMPYRNVVSWNIMLALY--VRIKDYDECLRMFDKM 344


>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 670

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 166/463 (35%), Positives = 265/463 (57%), Gaps = 13/463 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M S  +  N  T    L AC       K L ++A V EYG   D+ I+N+L+  YV    
Sbjct: 214 MQSEGTKPNKITIISLLSACGQVRAVDKGLWVYARVDEYGIEADVDIRNALIGMYVKCGC 273

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           +  A + F  +   +  SW T+I G  + G HKEA+ MF  +    V P+  TLVSVLS 
Sbjct: 274 MSDAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLST 333

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
            + L   + G+ +H +   +    +IIL N++++ Y +CG +A+   +F  M +R++VSW
Sbjct: 334 YAQLGDLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMAAAEIIFENMARRDIVSW 393

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI- 236
           T M+ GY +    + A ++F +M K ++   +E  LV++LSACS + AL  G+ +HSYI 
Sbjct: 394 TAMVCGYVKGLQFRTAFNLFDDM-KVRDVMASEMALVSLLSACSQLGALDKGREIHSYIK 452

Query: 237 --STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
             S R D+ + +    A+++MY KCG +  A ++F+ + +K  ++W+ +I GLA  G G+
Sbjct: 453 EKSVRTDMWLES----ALVDMYAKCGCIDAAAEIFSRMRHKQTLAWNAMIGGLASQGQGK 508

Query: 295 QALQLF-SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
           +A+ LF  L+ +    PD +T   ++ AC+H G+VD+GL  F  M T+  IVP  +HY C
Sbjct: 509 EAVALFEQLLKLRDPKPDAITLKVVLCACTHVGMVDEGLHYFNLMLTL-GIVPDNEHYGC 567

Query: 354 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVS 413
           +VD+ GRAGLL+EA  FI++MPI+    +WG+LL ACR+H   E+   I Q +++     
Sbjct: 568 IVDLLGRAGLLDEAYNFIQKMPIQPNPVIWGSLLAACRVHHRMELGKIIGQHIIDLAPND 627

Query: 414 VGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           VG   L+SN  A   +W+D  ++R  +    ++K  G S I+V
Sbjct: 628 VGAHVLISNLHAEEGQWDDVEQVRGMMGSRRVEKSPGHSSIQV 670



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 112/373 (30%), Positives = 192/373 (51%), Gaps = 6/373 (1%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           P +Y      Q+  A +          +HA V   G   D+F+ + L++FY   K +  A
Sbjct: 117 PDNYTMAAVAQSSAAFASWKGRATGDAVHALVQRIGFASDLFVMSGLINFYGASKSVEDA 176

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKCGFHK---EAIDMFCGIDVKPNANTLVSVLSACSSL 121
            ++F  +   DVVSWT +IS  ++CG       ++D       KPN  T++S+LSAC  +
Sbjct: 177 RKVFEEMHERDVVSWTLMISAFAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLSACGQV 236

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
            +   G  ++A       E ++ + NA++  Y++CG ++     F  MP RN  SW T+I
Sbjct: 237 RAVDKGLWVYARVDEYGIEADVDIRNALIGMYVKCGCMSDAWKTFKGMPIRNTKSWNTLI 296

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
            G+ + G  KEA+++F+EM  +    P+  TLV+VLS  + +  L  G+Y+H+YI   ++
Sbjct: 297 DGFVQNGKHKEALTMFEEM-LSDGVIPDVITLVSVLSTYAQLGDLQQGRYLHNYIKD-HE 354

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
           +    ++ N++INMY KCGD+  A  +F  +A +D +SW+ ++ G       R A  LF 
Sbjct: 355 IHCDIILQNSLINMYAKCGDMAAAEIIFENMARRDIVSWTAMVCGYVKGLQFRTAFNLFD 414

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            M +  V   ++  ++L+SACS  G +D+G  +   +     +   M   + +VDMY + 
Sbjct: 415 DMKVRDVMASEMALVSLLSACSQLGALDKGREIHSYIKE-KSVRTDMWLESALVDMYAKC 473

Query: 362 GLLEEAEAFIREM 374
           G ++ A      M
Sbjct: 474 GCIDAAAEIFSRM 486



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 103/228 (45%), Gaps = 7/228 (3%)

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVL---SACS 221
           +F +M +   + W  MI GY       +A+ +F+ M ++    P+  T+  V    +A +
Sbjct: 75  VFDRMAQPTAIVWNCMIRGYNSCHAPMDALELFRAMRRSG-VSPDNYTMAAVAQSSAAFA 133

Query: 222 SISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWS 281
           S    + G  VH+ +  R   +    V + +IN Y     V  A +VF  +  +D +SW+
Sbjct: 134 SWKGRATGDAVHALVQ-RIGFASDLFVMSGLINFYGASKSVEDARKVFEEMHERDVVSWT 192

Query: 282 TVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 341
            +IS  A  G     L+    M      P+ +T I+L+SAC     VD+GL ++ A    
Sbjct: 193 LMISAFAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLSACGQVRAVDKGLWVY-ARVDE 251

Query: 342 YEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           Y I   +     ++ MY + G + +A    + MPI    S W  L++ 
Sbjct: 252 YGIEADVDIRNALIGMYVKCGCMSDAWKTFKGMPIRNTKS-WNTLIDG 298


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 151/455 (33%), Positives = 254/455 (55%), Gaps = 5/455 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YT    L A +     Q    IHA V +YG   D+ + N+L+  Y+    +    +++
Sbjct: 414 NQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLY 473

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHK 125
            S+V  D++SW   +SGL  CG +   + +F  +  +   PN  T +S+L +CS L    
Sbjct: 474 ESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVH 533

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ +HAH ++N  ++N  +  A++D Y +C  L      F ++  R++ +WT +I  YA
Sbjct: 534 YGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYA 593

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +    ++A++ F++M++ +  +PNE TL   LS CSS+++L  G+ +HS +     +S  
Sbjct: 594 QTNQGEKALNYFRQMQQ-EGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVS-D 651

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             VG+A+++MY KCG +  A  +F  L  +D I+W+T+I G A NG G +AL  F +M+ 
Sbjct: 652 MFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLD 711

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             + PD VTF  ++SACSH GLV++G   F +M   + I P + H AC+VD+ GR G  +
Sbjct: 712 EGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFD 771

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           E E FI++M +     +W  +L A ++H N  + ++    L   +     ++ L+SN FA
Sbjct: 772 ELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFA 831

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
              RW+D  ++R  +   G+KK+ GCSW+E N  +
Sbjct: 832 TEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQV 866



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 197/392 (50%), Gaps = 11/392 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+      N +T T  LK C+ +   ++   IH+ +I+ G+  + FI   L+  Y     
Sbjct: 305 MMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGL 364

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
              A  +F ++  PD+V W+ +I+ L + G  +E+I +F  +   D  PN  T+ S+LSA
Sbjct: 365 AIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSA 424

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
            ++  + + G++IHA   +   E ++ + NA++  Y++ G +     L+  M  R+++SW
Sbjct: 425 ATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISW 484

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
              + G  + G     +++F  M +     PN  T +++L +CS +  + +G+ VH++I 
Sbjct: 485 NAYLSGLHDCGMYDRPLTIFYHMLEEGFI-PNMYTFISILGSCSCLFDVHYGRQVHAHI- 542

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            +  L  +N V  A+I+MY KC  +  A   FN L+ +D  +W+ +I+  A    G +AL
Sbjct: 543 IKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKAL 602

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI--VPQMQHYACVV 355
             F  M    V P++ T    +S CS    ++ G  L    S V++   V  M   + +V
Sbjct: 603 NYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLH---SMVFKSGHVSDMFVGSALV 659

Query: 356 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           DMY + G +EEAEA   E  I  +   W  ++
Sbjct: 660 DMYAKCGCMEEAEALF-EALIRRDTIAWNTII 690



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/418 (25%), Positives = 210/418 (50%), Gaps = 16/418 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +T    LKACSL        ++HA   + G L D+F+ ++L+  Y    +I  A ++F
Sbjct: 212 NEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMF 271

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLVSHK 125
             +   + V+W  +++G ++ G     + +FC    +DVK N  TL +VL  C++  + K
Sbjct: 272 IGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLK 331

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ IH+  ++   E N  +   ++D Y +CG       +F  + K ++V W+ +I    
Sbjct: 332 QGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLD 391

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           ++G  +E++ +F  M +  +  PN+ T+ ++LSA ++   L +G+ +H+ +  +Y     
Sbjct: 392 QQGQSEESIKLFHLM-RLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACV-WKYGFETD 449

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V NA++ MY+K G V    +++  +  +D ISW+  +SGL   G   + L +F  M+ 
Sbjct: 450 VAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLE 509

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQ--HYAC--VVDMYGRA 361
               P+  TFI+++ +CS   L D   + +      + I  Q+   ++ C  ++DMY + 
Sbjct: 510 EGFIPNMYTFISILGSCS--CLFD---VHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKC 564

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFAL 419
             LE+A+     + +   ++    + N  + ++ ++  +  RQ  + ++GV    F L
Sbjct: 565 MYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQ--MQQEGVKPNEFTL 620



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/392 (27%), Positives = 191/392 (48%), Gaps = 10/392 (2%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           ++  L+ C+       A  IH  +++     D  +  SL++ Y   +    A  +   + 
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKA 129
             DVVSWT +I GL   GF  ++I +F  +    + PN  TL + L ACS  ++  LGK 
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           +HA + +     ++ + +A++D Y +CG +     +F+ MP++N V+W  ++ GYA+RG 
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
               + +F  M +  + + NE TL  VL  C++   L  G+ +HS I  +     +  +G
Sbjct: 295 VTGVLKLFCSMMEL-DVKCNEFTLTTVLKGCANSKNLKQGQVIHSLI-IKCGYEGNEFIG 352

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
             +++MY KCG    AI VF  +   D + WS +I+ L   G   ++++LF LM +    
Sbjct: 353 CGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTL 412

Query: 310 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEA 369
           P+  T  +L+SA ++ G +  G  +  A    Y     +     +V MY + G + +   
Sbjct: 413 PNQYTICSLLSAATNTGNLQYGQSI-HACVWKYGFETDVAVSNALVTMYMKNGCVHDGTK 471

Query: 370 FIREMPIEAEWSVWGALLNACRIHRNDEMFDR 401
               M ++ +   W A L+   +H +  M+DR
Sbjct: 472 LYESM-VDRDLISWNAYLSG--LH-DCGMYDR 499


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 156/456 (34%), Positives = 250/456 (54%), Gaps = 6/456 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L     A+   +   IHA+ I      ++ +Q +LL  Y     +F A +IF
Sbjct: 209 NSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIF 268

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLVSH 124
           N+V   + V W+ +I G        +A+    DM C   + P   TL ++L AC+ L   
Sbjct: 269 NTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDL 328

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           K GK +H H +++  + +  + N+++  Y +CG + +      +M  ++ VS++ +I G 
Sbjct: 329 KRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGC 388

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
            + G+ ++A+ +F++M+ +  A P   T++ +L ACS ++AL  G   H Y   R   + 
Sbjct: 389 VQNGYAEKALLIFRQMQSSGIA-PYLETMIALLPACSHLAALQHGTCCHGYTVVR-GFTN 446

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
              + NA+I+MY KCG + I+ ++F+ +  +D ISW+T+I G  ++G   +AL LF  + 
Sbjct: 447 DTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQ 506

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
              + PDDVT IA++SACSH GLV +G   F +MS  + I P+M HY C+VD+  RAG L
Sbjct: 507 ALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNL 566

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           +EA  FI+ MP      +WGALL ACR H+N EM +++ + +        G F LMSN +
Sbjct: 567 DEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGPEGTGNFVLMSNIY 626

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +   RW+D   IR   R  G KK  GCSW+E++  I
Sbjct: 627 SSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVI 662



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/367 (31%), Positives = 183/367 (49%), Gaps = 7/367 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    +  ++TF   LKACS     Q    IH H    G   D+++  +LLH Y     
Sbjct: 98  MLQLGVTPTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGH 157

Query: 61  IFSAHQIFNSVVFPD--VVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVL 115
           ++ A  +FNS+   D  +V+W  +I+  S    H + I     +    V PN++TLVS+L
Sbjct: 158 LYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSIL 217

Query: 116 SACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVV 175
                  +   GKAIHA+ +RN   +N++L  A+LD Y +C  L     +F  + K+N V
Sbjct: 218 PTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDV 277

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
            W+ MIGGY       +A++++ +M       P  ATL  +L AC+ ++ L  GK +H +
Sbjct: 278 CWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCH 337

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
           +  +  + +   VGN++I+MY KCG +  A+   + +  KD +S+S +ISG   NG   +
Sbjct: 338 M-IKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEK 396

Query: 296 ALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVV 355
           AL +F  M  + + P   T IAL+ ACSH   +  G       + V            ++
Sbjct: 397 ALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCC-HGYTVVRGFTNDTSICNAII 455

Query: 356 DMYGRAG 362
           DMY + G
Sbjct: 456 DMYSKCG 462



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 167/352 (47%), Gaps = 18/352 (5%)

Query: 49  NSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVK 105
             L  ++++  +I  A  +F+ +  P VV W  +I   +  G  +++I ++     + V 
Sbjct: 45  TQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVT 104

Query: 106 PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYL 165
           P   T   +L ACSSL + +LG+ IH H+       ++ +  A+L  Y +CG L     L
Sbjct: 105 PTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTL 164

Query: 166 F--VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI 223
           F  +    R++V+W  MI  ++      + +    +M++     PN +TLV++L      
Sbjct: 165 FNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAG-VTPNSSTLVSILPTIGQA 223

Query: 224 SALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTV 283
           +AL  GK +H+Y    +    + ++  A+++MY KC  +  A ++FN +  K+ + WS +
Sbjct: 224 NALHQGKAIHAYYIRNFFFD-NVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAM 282

Query: 284 ISGLAMNGCGRQALQLFSLMI-INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 342
           I G  ++     AL L+  M+ I  + P   T   ++ AC+    + +G  L   M    
Sbjct: 283 IGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHM---- 338

Query: 343 EIVPQMQHYACV----VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 390
            I   M     V    + MY + G+++ A  F+ EM I  +   + A+++ C
Sbjct: 339 -IKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEM-IAKDTVSYSAIISGC 388



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 114/239 (47%), Gaps = 20/239 (8%)

Query: 164 YLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI 223
           ++F ++PK +VV W  MI  YA  G  ++++ ++  M +     P   T   +L ACSS+
Sbjct: 62  HVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLG-VTPTNFTFPFLLKACSSL 120

Query: 224 SALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK--ISWS 281
            AL  G+ +H++      LS+   V  A+++MY KCG +  A  +FN ++++D+  ++W+
Sbjct: 121 QALQLGRLIHTHAHI-LGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWN 179

Query: 282 TVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 341
            +I+  + +    Q +   + M    V P+  T ++++        + QG    KA+   
Sbjct: 180 AMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQG----KAIHAY 235

Query: 342 Y-------EIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           Y        +V Q      ++DMY +  LL  A      +  + +   W A++    +H
Sbjct: 236 YIRNFFFDNVVLQ----TALLDMYAKCHLLFYARKIFNTVNKKND-VCWSAMIGGYVLH 289



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 75/171 (43%), Gaps = 13/171 (7%)

Query: 227 SFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
           SF  + H +  +  D + + L        ++   ++ +A  VF+ +     + W+ +I  
Sbjct: 27  SFSPHPHPHRVSDSDAAATQLA-----RYHISRNEIQLARHVFDQIPKPSVVLWNMMIRT 81

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 346
            A +G  +Q++ L+  M+   V P + TF  L+ ACS      Q L L + + T   I+ 
Sbjct: 82  YAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSSL----QALQLGRLIHTHAHILG 137

Query: 347 -QMQHY--ACVVDMYGRAGLLEEAEAFIREMP-IEAEWSVWGALLNACRIH 393
             M  Y    ++ MY + G L +A+     +   + +   W A++ A   H
Sbjct: 138 LSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFH 188


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 151/455 (33%), Positives = 254/455 (55%), Gaps = 5/455 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YT    L A +     Q    IHA V +YG   D+ + N+L+  Y+    +    +++
Sbjct: 414 NQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLY 473

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHK 125
            S+V  D++SW   +SGL  CG +   + +F  +  +   PN  T +S+L +CS L    
Sbjct: 474 ESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVH 533

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ +HAH ++N  ++N  +  A++D Y +C  L      F ++  R++ +WT +I  YA
Sbjct: 534 YGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYA 593

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +    ++A++ F++M++ +  +PNE TL   LS CSS+++L  G+ +HS +     +S  
Sbjct: 594 QTNQGEKALNYFRQMQQ-EGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVS-D 651

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             VG+A+++MY KCG +  A  +F  L  +D I+W+T+I G A NG G +AL  F +M+ 
Sbjct: 652 MFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLD 711

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             + PD VTF  ++SACSH GLV++G   F +M   + I P + H AC+VD+ GR G  +
Sbjct: 712 EGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFD 771

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           E E FI++M +     +W  +L A ++H N  + ++    L   +     ++ L+SN FA
Sbjct: 772 ELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFA 831

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
              RW+D  ++R  +   G+KK+ GCSW+E N  +
Sbjct: 832 TEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQV 866



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 109/384 (28%), Positives = 195/384 (50%), Gaps = 11/384 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +T T  LK C+ +   ++   IH+ +I+ G+  + FI   L+  Y        A  +F
Sbjct: 313 NEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVF 372

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
            ++  PD+V W+ +I+ L + G  +E+I +F  +   D  PN  T+ S+LSA ++  + +
Sbjct: 373 KTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQ 432

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G++IHA   +   E ++ + NA++  Y++ G +     L+  M  R+++SW   + G  
Sbjct: 433 YGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLH 492

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G     +++F  M +     PN  T +++L +CS +  + +G+ VH++I  +  L  +
Sbjct: 493 DCGMYDRPLTIFYHMLEEGFI-PNMYTFISILGSCSCLFDVHYGRQVHAHI-IKNQLDDN 550

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
           N V  A+I+MY KC  +  A   FN L+ +D  +W+ +I+  A    G +AL  F  M  
Sbjct: 551 NFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQ 610

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI--VPQMQHYACVVDMYGRAGL 363
             V P++ T    +S CS    ++ G  L    S V++   V  M   + +VDMY + G 
Sbjct: 611 EGVKPNEFTLAGCLSGCSSLASLEGGQQLH---SMVFKSGHVSDMFVGSALVDMYAKCGC 667

Query: 364 LEEAEAFIREMPIEAEWSVWGALL 387
           +EEAEA   E  I  +   W  ++
Sbjct: 668 MEEAEALF-EALIRRDTIAWNTII 690



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 106/418 (25%), Positives = 210/418 (50%), Gaps = 16/418 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +T    LKACSL        ++HA   + G L D+F+ ++L+  Y    +I  A ++F
Sbjct: 212 NEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMF 271

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLVSHK 125
             +   + V+W  +++G ++ G     + +FC    +DVK N  TL +VL  C++  + K
Sbjct: 272 IGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLK 331

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ IH+  ++   E N  +   ++D Y +CG       +F  + K ++V W+ +I    
Sbjct: 332 QGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLD 391

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           ++G  +E++ +F  M +  +  PN+ T+ ++LSA ++   L +G+ +H+ +  +Y     
Sbjct: 392 QQGQSEESIKLFHLM-RLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACV-WKYGFETD 449

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V NA++ MY+K G V    +++  +  +D ISW+  +SGL   G   + L +F  M+ 
Sbjct: 450 VAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLE 509

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQ--HYAC--VVDMYGRA 361
               P+  TFI+++ +CS   L D   + +      + I  Q+   ++ C  ++DMY + 
Sbjct: 510 EGFIPNMYTFISILGSCS--CLFD---VHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKC 564

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFAL 419
             LE+A+     + +   ++    + N  + ++ ++  +  RQ  + ++GV    F L
Sbjct: 565 MYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQ--MQQEGVKPNEFTL 620



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/392 (27%), Positives = 191/392 (48%), Gaps = 10/392 (2%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           ++  L+ C+       A  IH  +++     D  +  SL++ Y   +    A  +   + 
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKA 129
             DVVSWT +I GL   GF  ++I +F  +    + PN  TL + L ACS  ++  LGK 
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           +HA + +     ++ + +A++D Y +CG +     +F+ MP++N V+W  ++ GYA+RG 
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
               + +F  M +  + + NE TL  VL  C++   L  G+ +HS I  +     +  +G
Sbjct: 295 VTGVLKLFCSMMEL-DVKCNEFTLTTVLKGCANSKNLKQGQVIHSLI-IKCGYEGNEFIG 352

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
             +++MY KCG    AI VF  +   D + WS +I+ L   G   ++++LF LM +    
Sbjct: 353 CGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTL 412

Query: 310 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEA 369
           P+  T  +L+SA ++ G +  G  +  A    Y     +     +V MY + G + +   
Sbjct: 413 PNQYTICSLLSAATNTGNLQYGQSI-HACVWKYGFETDVAVSNALVTMYMKNGCVHDGTK 471

Query: 370 FIREMPIEAEWSVWGALLNACRIHRNDEMFDR 401
               M ++ +   W A L+   +H +  M+DR
Sbjct: 472 LYESM-VDRDLISWNAYLSG--LH-DCGMYDR 499


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 156/433 (36%), Positives = 252/433 (58%), Gaps = 6/433 (1%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           E+H H +E G + D  + ++ +H Y+    I  A  +F+ +    V +W  +I G ++  
Sbjct: 545 EVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQR 604

Query: 91  FHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
             +EA+ +F  +  +   P+A T +++LSA     + +  K +H+H+  +    ++ + N
Sbjct: 605 CGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHAT-DAGLVDLRVGN 663

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           A++  Y +CG++     +F  M +RNV +WT MIGG A+ G   +A S F +M + +   
Sbjct: 664 ALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLR-EGIV 722

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
           P+  T V++LSAC+S  AL + K VH++ +    L     VGNA+++MY KCG +  A  
Sbjct: 723 PDATTYVSILSACASTGALEWVKEVHNH-AVSAGLVSDLRVGNALVHMYAKCGSIDDARS 781

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           VF+ +  +D  SW+ +I GLA +G G +AL  F  M      P+  +++A+++ACSH GL
Sbjct: 782 VFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGL 841

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           VD+G   F +M+  Y I P M+HY C+VD+ GRAGLLEEAE FI  MPIE + + WGALL
Sbjct: 842 VDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALL 901

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
            AC  + N EM +   ++ +  K  S  T+ L+SN +A   +WE    +R  ++R G++K
Sbjct: 902 GACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRK 961

Query: 448 KTGCSWIEVNPSI 460
           + G SWIEV+  I
Sbjct: 962 EPGRSWIEVDNRI 974



 Score =  187 bits (475), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 103/319 (32%), Positives = 188/319 (58%), Gaps = 11/319 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +++   L+ C        A ++H  +I+ G   ++++ N LL  Y+    +  A Q+F
Sbjct: 117 DSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVF 176

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF------CGIDVKPNANTLVSVLSACSSLV 122
           + ++  ++  WTT+I G ++ G  ++A+ ++      CG   +PN  T +S+L AC   V
Sbjct: 177 DKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECG---QPNEITYLSILKACCCPV 233

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
           + K GK IHAH +++  ++++ ++ A+++ Y++CGS+     +F KM +RNV+SWT MIG
Sbjct: 234 NLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIG 293

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
           G A  G  +EA  +F +M++ +   PN  T V++L+A +S  AL + K VHS+ +    L
Sbjct: 294 GLAHYGRGQEAFHLFLQMQR-EGFIPNSYTYVSILNANASAGALEWVKEVHSH-AVNAGL 351

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
           ++   VGNA+++MY K G +  A  VF+ +  +D  SW+ +I GLA +G G++A  LF  
Sbjct: 352 ALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQ 411

Query: 303 MIINAVFPDDVTFIALISA 321
           M  N   P+  T++++++A
Sbjct: 412 MQRNGCLPNLTTYLSILNA 430



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 119/401 (29%), Positives = 212/401 (52%), Gaps = 17/401 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALE----IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           N  T+   L A ++A     ALE    +H H  E G + D+ I N+L+H Y     I  A
Sbjct: 420 NLTTYLSILNASAIAST--SALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDA 477

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSL 121
             +F+ +   DV+SW  ++ GL++ G   EA  +F  +  +   P++ T +S+L+   S 
Sbjct: 478 RLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGST 537

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
            + +    +H H++     ++  + +A +  YIRCGS+     LF K+  R+V +W  MI
Sbjct: 538 DALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMI 597

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
           GG A++   +EA+S+F +M++ +   P+  T +N+LSA     AL + K VHS+ +   D
Sbjct: 598 GGAAQQRCGREALSLFLQMQR-EGFIPDATTFINILSANVDEEALEWVKEVHSHAT---D 653

Query: 242 LSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
             + +L VGNA+++ Y KCG+V  A QVF+ +  ++  +W+ +I GLA +GCG  A   F
Sbjct: 654 AGLVDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHF 713

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
             M+   + PD  T+++++SAC+  G ++  +      +    +V  ++    +V MY +
Sbjct: 714 LQMLREGIVPDATTYVSILSACASTGALEW-VKEVHNHAVSAGLVSDLRVGNALVHMYAK 772

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFD 400
            G +++A +   +M +E +   W  ++     H R  E  D
Sbjct: 773 CGSIDDARSVFDDM-VERDVFSWTVMIGGLAQHGRGLEALD 812



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 169/318 (53%), Gaps = 7/318 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YT+   L A + A   +   E+H+H +  G   D+ + N+L+H Y     I  A  +F
Sbjct: 319 NSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVF 378

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVL--SACSSLVS 123
           + +   D+ SWT +I GL++ G  +EA  +F  +      PN  T +S+L  SA +S  +
Sbjct: 379 DGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSA 438

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            +  K +H H+      +++ + NA++  Y +CGS+     +F  M  R+V+SW  M+GG
Sbjct: 439 LEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGG 498

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
            A+ G   EA +VF +M++ +   P+  T +++L+   S  AL +   VH + +    L 
Sbjct: 499 LAQNGCGHEAFTVFLQMQQ-EGLVPDSTTYLSLLNTHGSTDALEWVNEVHKH-AVETGLI 556

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
               VG+A I+MY++CG +  A  +F+ L+ +   +W+ +I G A   CGR+AL LF  M
Sbjct: 557 SDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQM 616

Query: 304 IINAVFPDDVTFIALISA 321
                 PD  TFI ++SA
Sbjct: 617 QREGFIPDATTFINILSA 634



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 8/212 (3%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T+   L AC+     +   E+H H +  G + D+ + N+L+H Y     I  A  +F+ +
Sbjct: 727 TYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDM 786

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
           V  DV SWT +I GL++ G   EA+D F  +     KPN  + V+VL+ACS       G+
Sbjct: 787 VERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGR 846

Query: 129 AIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIGGYAE 186
                  ++   E  +     ++D   R G L       + MP + +   W  ++G    
Sbjct: 847 RQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVT 906

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLS 218
            G  + A    +E  K K   P  A+   +LS
Sbjct: 907 YGNLEMAEFAAKERLKLK---PKSASTYVLLS 935


>gi|115477555|ref|NP_001062373.1| Os08g0538800 [Oryza sativa Japonica Group]
 gi|50725675|dbj|BAD33141.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113624342|dbj|BAF24287.1| Os08g0538800 [Oryza sativa Japonica Group]
 gi|215697775|dbj|BAG91968.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 581

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 164/460 (35%), Positives = 261/460 (56%), Gaps = 8/460 (1%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           + ++Y+   A+ A +         + HA  ++     D F+ N+L++ Y +     SA  
Sbjct: 90  TLDNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARL 149

Query: 67  IFNSVV--FPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSL 121
           + +S      DVVSW TII+G  + G   +A+  F  +    V+ +  TL++VL AC+  
Sbjct: 150 VLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACART 209

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
            + K+G   HA  + N  E N  + ++++  Y +CG +     +F +MP+RNVV WT+MI
Sbjct: 210 GAMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMI 269

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
            G  + G  KEAV +F++M+     + ++AT+  V+S+C  + AL  G+Y+H+Y    + 
Sbjct: 270 AGCTQSGRFKEAVDLFRDMQ-IAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDG-HG 327

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
           L     V N++I+MY KCGDV  A Q+F+ L  +D  +W+ +I G AMNG   +AL LF+
Sbjct: 328 LGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFA 387

Query: 302 LMI-INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
            M   + V P++V F+ +++ACSHGGLV+QG   F  MS VY +VP+++HY C+VD+ GR
Sbjct: 388 QMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGR 447

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           A LL EAE FI++MP+  +  VW +LL ACR      + +   + +   +    G   L+
Sbjct: 448 AKLLAEAEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQLEPKRCGGHVLL 507

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           SN +A   RW D N +R  +      KK GCS+IEV+  I
Sbjct: 508 SNVYATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEVDGCI 547


>gi|357167761|ref|XP_003581320.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Brachypodium distachyon]
          Length = 773

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 149/434 (34%), Positives = 263/434 (60%), Gaps = 17/434 (3%)

Query: 33  HAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFH 92
           HA +I       + I NSL+  Y   + +  A  +F  +   D  SW+ +++G  K G  
Sbjct: 345 HAVIIRRNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRDDESWSLMVAGYCKAGLD 404

Query: 93  KEAIDMFCGIDVKP------NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
            + ++++  +  +       +  +LVS +S+CS L   +LG+++H +S++ L + N I  
Sbjct: 405 VKCLELYRQMQCRDHDEFLCDITSLVSAISSCSRLGRLRLGQSVHCYSIKCLLDENSI-T 463

Query: 147 NAILDFYIRCGSLA-SCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
           N+++  Y RCG+   +C    V   +R+VV+W  +I  Y+  G   +A+S++ +M  T++
Sbjct: 464 NSLIGMYGRCGNFELACKIFAVAKLRRDVVTWNALISSYSHVGRSNDALSLYGQM-LTED 522

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYIST---RYDLSVSNLVGNAVINMYVKCGDV 262
            +PN +TL+ V+SAC++++AL  G+ +HSY+       D+S+S     A+++MY KCG +
Sbjct: 523 VKPNSSTLITVISACANLAALEHGELLHSYVKNMGLESDVSIST----ALVDMYTKCGQL 578

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
           G A  +F+ +  +D ++W+ +ISG  M+G   QAL+LFS M   ++ P+ +TF+A++SAC
Sbjct: 579 GTARGIFDSMLQRDVVTWNVMISGYGMHGEANQALKLFSEMEAGSIKPNSLTFLAILSAC 638

Query: 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
            H GLVD+G  LF  M   Y + P ++HYAC+VD+ G++GLL+EAE  +  MPI+ +  V
Sbjct: 639 CHAGLVDEGRKLFIRMGG-YRLEPNLKHYACMVDLLGKSGLLQEAEDLVLAMPIKPDGGV 697

Query: 383 WGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442
           WG LL+AC++H N EM  R+ +   +    + G + LMSN++  A++W++  K+RD ++ 
Sbjct: 698 WGTLLSACKVHDNFEMGLRVAKKAFSSDPRNDGYYILMSNSYGSAEKWDEIEKLRDTMKN 757

Query: 443 MGLKKKTGCSWIEV 456
            G++K  G S ++V
Sbjct: 758 YGVEKGVGWSAVDV 771



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 111/429 (25%), Positives = 209/429 (48%), Gaps = 18/429 (4%)

Query: 32  IHAHVIEYGHL---HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGL-- 86
           +H++ +++G L     + + +SL++ Y     +  A ++F+ +V  DVV+WT ++SG   
Sbjct: 135 VHSYSVKFGLLAGDGSVAVSSSLVYMYARCGSLGDAVKLFDEMVERDVVAWTAVVSGCVR 194

Query: 87  -SKCG----FHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNEN 141
             +CG    +  + I +      +PN+ T+ S L AC  L     G+ +H ++++    +
Sbjct: 195 NGECGKGICYLVQMIRLAGDSGARPNSRTMESGLEACGVLGELSAGRCLHGYAVKEGIRD 254

Query: 142 NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME 201
             ++ +A+   Y +C        LF ++ +++VVSWT +IG Y  RG  +EAV +FQEME
Sbjct: 255 CALVVSALFSMYSKCDMTEDACILFPELTEKDVVSWTGLIGAYCRRGLAREAVELFQEME 314

Query: 202 KTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGD 261
           ++   +P+E  +  VLS   S + ++ GK  H+ I  R +   S L+ N++I+MY K   
Sbjct: 315 QSG-LQPDEVLVSCVLSGLGSSANVNRGKAFHAVI-IRRNFGDSVLIANSLISMYGKFEL 372

Query: 262 VGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII---NAVFPDDVTFIAL 318
           V +A  VF ML  +D  SWS +++G    G   + L+L+  M     +    D  + ++ 
Sbjct: 373 VDVAGTVFGMLHQRDDESWSLMVAGYCKAGLDVKCLELYRQMQCRDHDEFLCDITSLVSA 432

Query: 319 ISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEA 378
           IS+CS  G +  G  +     ++  ++ +      ++ MYGR G  E A        +  
Sbjct: 433 ISSCSRLGRLRLGQSVH--CYSIKCLLDENSITNSLIGMYGRCGNFELACKIFAVAKLRR 490

Query: 379 EWSVWGALLNA-CRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIR 437
           +   W AL+++   + R+++      Q L      +  T   + +  A     E    + 
Sbjct: 491 DVVTWNALISSYSHVGRSNDALSLYGQMLTEDVKPNSSTLITVISACANLAALEHGELLH 550

Query: 438 DEIRRMGLK 446
             ++ MGL+
Sbjct: 551 SYVKNMGLE 559



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/392 (24%), Positives = 189/392 (48%), Gaps = 12/392 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L+AC +         +H + ++ G      + ++L   Y        A  +F
Sbjct: 220 NSRTMESGLEACGVLGELSAGRCLHGYAVKEGIRDCALVVSALFSMYSKCDMTEDACILF 279

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   DVVSWT +I    + G  +EA+++F  ++   ++P+   +  VLS   S  +  
Sbjct: 280 PELTEKDVVSWTGLIGAYCRRGLAREAVELFQEMEQSGLQPDEVLVSCVLSGLGSSANVN 339

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GKA HA  +R    +++++ N+++  Y +   +   G +F  + +R+  SW+ M+ GY 
Sbjct: 340 RGKAFHAVIIRRNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRDDESWSLMVAGYC 399

Query: 186 ERGFCKEAVSVFQEMEKTKEAE--PNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDL 242
           + G   + + ++++M+     E   +  +LV+ +S+CS +  L  G+ VH Y I    D 
Sbjct: 400 KAGLDVKCLELYRQMQCRDHDEFLCDITSLVSAISSCSRLGRLRLGQSVHCYSIKCLLD- 458

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDKISWSTVISGLAMNGCGRQALQLFS 301
              N + N++I MY +CG+  +A ++F +    +D ++W+ +IS  +  G    AL L+ 
Sbjct: 459 --ENSITNSLIGMYGRCGNFELACKIFAVAKLRRDVVTWNALISSYSHVGRSNDALSLYG 516

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            M+   V P+  T I +ISAC++   ++ G +L   +  +  +   +     +VDMY + 
Sbjct: 517 QMLTEDVKPNSSTLITVISACANLAALEHGELLHSYVKNM-GLESDVSISTALVDMYTKC 575

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           G L  A      M ++ +   W  +++   +H
Sbjct: 576 GQLGTARGIFDSM-LQRDVVTWNVMISGYGMH 606



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 8/187 (4%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML+     N  T    + AC+     +    +H++V   G   D+ I  +L+  Y     
Sbjct: 518 MLTEDVKPNSSTLITVISACANLAALEHGELLHSYVKNMGLESDVSISTALVDMYTKCGQ 577

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           + +A  IF+S++  DVV+W  +ISG    G   +A+ +F  ++   +KPN+ T +++LSA
Sbjct: 578 LGTARGIFDSMLQRDVVTWNVMISGYGMHGEANQALKLFSEMEAGSIKPNSLTFLAILSA 637

Query: 118 C--SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNV 174
           C  + LV       I     R   E N+     ++D   + G L     L + MP K + 
Sbjct: 638 CCHAGLVDEGRKLFIRMGGYR--LEPNLKHYACMVDLLGKSGLLQEAEDLVLAMPIKPDG 695

Query: 175 VSWTTMI 181
             W T++
Sbjct: 696 GVWGTLL 702



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 114/254 (44%), Gaps = 23/254 (9%)

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
           F   P  +   W +++  +        A+S  + M +   A P+  T     SA + ++A
Sbjct: 70  FSASPCPDTFLWNSLLRSHHCASDFDSALSAHRRM-RASGARPSRFTAPLAASAAAELAA 128

Query: 226 LSFGKYVHSYISTRYDLSVSN---LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWST 282
           L  G  VHSY S ++ L   +    V ++++ MY +CG +G A+++F+ +  +D ++W+ 
Sbjct: 129 LPVGTSVHSY-SVKFGLLAGDGSVAVSSSLVYMYARCGSLGDAVKLFDEMVERDVVAWTA 187

Query: 283 VISGLAMNG-CGRQ---ALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM 338
           V+SG   NG CG+     +Q+  L   +   P+  T  + + AC   G +  G  L    
Sbjct: 188 VVSGCVRNGECGKGICYLVQMIRLAGDSGARPNSRTMESGLEACGVLGELSAGRCLHG-- 245

Query: 339 STVYEIVPQMQHYACVV----DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CR-- 391
              Y +   ++  A VV     MY +  + E+A     E+  E +   W  L+ A CR  
Sbjct: 246 ---YAVKEGIRDCALVVSALFSMYSKCDMTEDACILFPEL-TEKDVVSWTGLIGAYCRRG 301

Query: 392 -IHRNDEMFDRIRQ 404
                 E+F  + Q
Sbjct: 302 LAREAVELFQEMEQ 315


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 160/493 (32%), Positives = 264/493 (53%), Gaps = 50/493 (10%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L  C+         + H   +    + ++F+ N L+  Y     +  A+ +F+++
Sbjct: 231 TLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNM 290

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---------------------------- 103
              DVVSW  +++G S+ G  ++A+ +F  +                             
Sbjct: 291 PVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEAL 350

Query: 104 ----------VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR---NLNEN-----NIIL 145
                     +KPN  TL+SVLS C+S+ +   GK IH ++++   +L +N     N+++
Sbjct: 351 GVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVI 410

Query: 146 DNAILDFYIRCGSLASCGYLFVKM-PK-RNVVSWTTMIGGYAERGFCKEAVSVFQEM-EK 202
            N ++D Y +C  +     +F  + PK R+VV+WT MIGGY++ G   +A+ +  EM E+
Sbjct: 411 -NQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEE 469

Query: 203 TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 262
             +  PN  T+   L AC+S++ALS GK +H+Y       +V   V N +I+MY KCGD+
Sbjct: 470 DCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDI 529

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
           G A  VF+ +  K++++W+++++G  M+G G +AL +F  M       D VT + ++ AC
Sbjct: 530 GDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYAC 589

Query: 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
           SH G++DQG+  F  M T + + P  +HYAC+VD+ GRAG L  A   I EMP+E    V
Sbjct: 590 SHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVV 649

Query: 383 WGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442
           W ALL+ CRIH   E+ +   + +      + G++ L+SN +A A RW+D  +IR  +R 
Sbjct: 650 WVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRH 709

Query: 443 MGLKKKTGCSWIE 455
            G+KK+ GCSW+E
Sbjct: 710 KGIKKRPGCSWVE 722



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 156/312 (50%), Gaps = 7/312 (2%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD--VVSWTTIISGLSKC 89
           IH  ++ +G L  + + + L+  Y+++  +  A  +       D  V  W ++I      
Sbjct: 47  IHQKLLSFGIL-TLNLTSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNN 105

Query: 90  GFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
           G   + +  FC    +   P+  T   V  AC  + S + G + HA S      +N+ + 
Sbjct: 106 GRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVG 165

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           NA++  Y RCGSL+    +F +MP  +VVSW ++I  YA+ G  K A+ +F +M      
Sbjct: 166 NALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGF 225

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
            P++ TLVNVL  C+S+   S GK  H +  T  ++  +  VGN +++MY K G +  A 
Sbjct: 226 RPDDITLVNVLPPCASVGTRSLGKQFHGFAVTS-EMIQNMFVGNCLVDMYAKFGMMDEAN 284

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
            VF+ +  KD +SW+ +++G +  G    A++LF  M    +  D VT+ A IS  +  G
Sbjct: 285 TVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRG 344

Query: 327 LVDQGLILFKAM 338
           L  + L + + M
Sbjct: 345 LGYEALGVCRQM 356



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 150/307 (48%), Gaps = 17/307 (5%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEY-------GHLHDIFIQNSLLH 53
           MLS     N  T    L  C+         EIH + I+Y       GH  +  + N L+ 
Sbjct: 356 MLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLID 415

Query: 54  FYVTVKDIFSAHQIFNSVVFP--DVVSWTTIISGLSKCGFHKEAIDMFCGI-----DVKP 106
            Y   K +  A  +F+S+     DVV+WT +I G S+ G   +A+++   +       +P
Sbjct: 416 MYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRP 475

Query: 107 NANTLVSVLSACSSLVSHKLGKAIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYL 165
           NA T+   L AC+SL +  +GK IHA++LRN  N   + + N ++D Y +CG +     +
Sbjct: 476 NAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLV 535

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
           F  M ++N V+WT+++ GY   G+ +EA+ +F+EM +    + +  TL+ VL ACS    
Sbjct: 536 FDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIG-FKLDGVTLLVVLYACSHSGM 594

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF-NMLAYKDKISWSTVI 284
           +  G    + + T + +S        ++++  + G +  A+++   M      + W  ++
Sbjct: 595 IDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALL 654

Query: 285 SGLAMNG 291
           S   ++G
Sbjct: 655 SCCRIHG 661



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 132/277 (47%), Gaps = 18/277 (6%)

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRN--VVSWTTMIGGYAERGFCKEAVSVFQEMEK 202
           L + ++  YI  G L+    L  + P  +  V  W ++I  Y   G   + +S F  M  
Sbjct: 61  LTSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHS 120

Query: 203 TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL-VGNAVINMYVKCGD 261
                P+  T   V  AC  IS++  G   H+   +R    +SN+ VGNA++ MY +CG 
Sbjct: 121 LSWT-PDNYTFPFVFKACGEISSVRCGDSSHAL--SRVTGFMSNVFVGNALVAMYSRCGS 177

Query: 262 VGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF-PDDVTFIALIS 320
           +  A +VF+ +   D +SW+++I   A  G  + AL++FS M     F PDD+T + ++ 
Sbjct: 178 LSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLP 237

Query: 321 ACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIE--- 377
            C+  G    G   F   +   E++  M    C+VDMY + G+++EA      MP++   
Sbjct: 238 PCASVGTRSLGK-QFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVV 296

Query: 378 ------AEWSVWGALLNACRIHRNDEMFDRIRQDLVN 408
                 A +S  G   +A R+    +  ++I+ D+V 
Sbjct: 297 SWNAMVAGYSQIGRFEDAVRLFEQMQE-EKIKMDVVT 332


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 158/478 (33%), Positives = 256/478 (53%), Gaps = 31/478 (6%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           NH+TF   L AC+     +   E H  +++ G   ++F+ N L+  Y     I  A ++F
Sbjct: 165 NHFTFASILPACT---DLEVLGEFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELF 221

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKP--NANTLVSVLSAC-------- 118
           + +   DVVSW  +I+G  + G  ++A+ +F  I  +     NT+++  + C        
Sbjct: 222 DKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYAQCGDVENAVE 281

Query: 119 -------SSLVSHKL--------GKAIHAHSL-RNLNENNIILDNAILDFYIRCGSLASC 162
                   +LVS           G    A  L + + E N+I  NA++  + + G +   
Sbjct: 282 LFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEA 341

Query: 163 GYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS 222
             LF  MP+ NVVSW  MI GY++ G  + A+ +F +M+   + +PN  T   VL AC++
Sbjct: 342 LKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMV-DMKPNTETFAIVLPACAA 400

Query: 223 ISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWST 282
           ++ L  G   H  +  R       LVGN ++ MY KCG +  A +VF+ +  +D  S S 
Sbjct: 401 LAVLEQGNEAHEVV-IRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSA 459

Query: 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 342
           +I G A+NGC +++L+LF  M    + PD VTF+ ++SAC H GLVD+G   F  M+  Y
Sbjct: 460 MIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFY 519

Query: 343 EIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRI 402
            I P M+HY C++D+ GRAG  +EA   I +MPI+ +  +WG+LL+ACR H N ++ +++
Sbjct: 520 HITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIKPDADMWGSLLSACRTHNNIDLGEKV 579

Query: 403 RQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            Q L+     +   + L+SN +A A RW+D   +R+ ++   +KKK GCSWI +   +
Sbjct: 580 AQHLIALNPQNPAPYVLLSNIYAAAGRWDDIGSVRNRMKDRKVKKKLGCSWIVIKKQV 637



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 119/405 (29%), Positives = 198/405 (48%), Gaps = 31/405 (7%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYG-HLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           T+   L+ C  A     A  +HAH+I+      DI + N L+  YV +  +  A ++F+ 
Sbjct: 66  TYDSLLQGCLNAKSLPDAKLLHAHMIQTQFECQDISLGNKLVSIYVKLGSLVEARRVFDE 125

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKLG 127
           +   +VVSWT +I+  ++    +EA+  F     + ++PN  T  S+L AC+ L    LG
Sbjct: 126 MPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACTDL--EVLG 183

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           +  H   ++   E+N+ + N ++D Y + G +     LF KMP+R+VVSW  MI GY + 
Sbjct: 184 E-FHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQN 242

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G  ++A+ +FQE+ K      N  T++   + C           V + +     +   NL
Sbjct: 243 GLIEDALKLFQEIPKRDVITWN--TMMAGYAQCGD---------VENAVELFEKMPEQNL 291

Query: 248 VG-NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
           V  N +I  YV+ G V  A ++F ++  ++ ISW+ VISG A NG   +AL+LF  M   
Sbjct: 292 VSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPEC 351

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
            V    V++ A+I+  S  G  +  L LF  M  V ++ P  + +A V+       +LE+
Sbjct: 352 NV----VSWNAMIAGYSQNGQAENALKLFGQMQMV-DMKPNTETFAIVLPACAALAVLEQ 406

Query: 367 A----EAFIR---EMPIEAEWSVWGALLNACRIHRNDEMFDRIRQ 404
                E  IR   +  +    ++ G       I    ++FDR+RQ
Sbjct: 407 GNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQ 451


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 153/496 (30%), Positives = 269/496 (54%), Gaps = 37/496 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK- 59
           ML+     +H  F   LK+C+L         +H ++I  G   D++  N+L++ Y  ++ 
Sbjct: 97  MLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRF 156

Query: 60  ------------DIF-------------------SAHQIFNSVVFPDVVSWTTIISGLSK 88
                       ++F                   S  +IF  +   D+VSW TII+G ++
Sbjct: 157 LEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNAR 216

Query: 89  CGFHKEAIDM---FCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
            G ++E + M     G ++KP++ TL SVL   +  V    GK IH  S+R   + +I +
Sbjct: 217 NGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYV 276

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            ++++D Y +C  +A    +F  + +R+ +SW ++I G  + G   E +  F++M   K 
Sbjct: 277 ASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAK- 335

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
            +P   +  +++ AC+ ++ L  GK +H YI TR     +  + +++++MY KCG++  A
Sbjct: 336 IKPKSYSFSSIMPACAHLTTLHLGKQLHGYI-TRNGFDENIFIASSLVDMYAKCGNIRTA 394

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
            Q+F+ +  +D +SW+ +I G A++G    A++LF  M    + P+ V F+A+++ACSHG
Sbjct: 395 KQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHG 454

Query: 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 385
           GLVD+    F +M+  + I P ++HYA V D+ GRAG LEEA  FI  M I    S+W  
Sbjct: 455 GLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWAT 514

Query: 386 LLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445
           LL+ACR+H N +M +++   ++     + G + L++N ++ A RW++  K R  +RR+G+
Sbjct: 515 LLSACRVHXNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGI 574

Query: 446 KKKTGCSWIEVNPSIF 461
           +K   CSWIEV   ++
Sbjct: 575 RKTPACSWIEVKNKVY 590



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 108/446 (24%), Positives = 208/446 (46%), Gaps = 49/446 (10%)

Query: 12  TFTQALKACSLAHP-----HQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           T T+AL    L +P       +A ++HA V+++     +   + LL  Y  +  +  + +
Sbjct: 3   TSTEALVKALLRNPLSIKSRSQAQQLHAQVLKF-QASSLCNLSLLLSIYSHINLLHDSLR 61

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVS 123
           +FN++ FP  ++W ++I   +  G   +++  F G+    + P+ N   SVL +C+ L+ 
Sbjct: 62  LFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMD 121

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGY------------------- 164
             LG+++H + +R   + ++   NA+++ Y +   L   G                    
Sbjct: 122 LNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSV 181

Query: 165 -------------LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEA 211
                        +F  MP++++VSW T+I G A  G  +E + + +EM      +P+  
Sbjct: 182 RTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGAN-LKPDSF 240

Query: 212 TLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 271
           TL +VL   +    +S GK +H   S R  L     V +++I+MY KC  V  + +VF +
Sbjct: 241 TLSSVLPLIAENVDISRGKEIHG-CSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTL 299

Query: 272 LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
           L  +D ISW+++I+G   NG   + L+ F  M++  + P   +F +++ AC+H   +  G
Sbjct: 300 LTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLG 359

Query: 332 LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACR 391
             L   + T       +   + +VDMY + G +  A+     M +    S W A++  C 
Sbjct: 360 KQLHGYI-TRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVS-WTAMIMGCA 417

Query: 392 IHRND----EMFDRIRQDLVNKKGVS 413
           +H       E+F+++  + +    V+
Sbjct: 418 LHGQAPDAIELFEQMETEGIKPNHVA 443


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 153/458 (33%), Positives = 264/458 (57%), Gaps = 10/458 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA-HQI 67
           +++T    +KAC+          IH    +   + D+F+ N+L+  Y     +  A  ++
Sbjct: 207 DNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRV 266

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLV 122
           F+ +    V SW  ++ G ++    ++A+D++      G+D  P+  T+ S+L ACS + 
Sbjct: 267 FDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLD--PDWFTIGSLLLACSRMK 324

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
           S   G+ IH  +LRN    +  +  ++L  YI CG   +   LF  M  R++VSW  MI 
Sbjct: 325 SLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIA 384

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
           GY++ G   EA+++F++M  +   +P E  ++ V  ACS +SAL  GK +H + + +  L
Sbjct: 385 GYSQNGLPDEAINLFRQM-LSDGIQPYEIAIMCVCGACSQLSALRLGKELHCF-ALKAHL 442

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
           +    V +++I+MY K G +G++ ++F+ L  KD  SW+ +I+G  ++G G++AL+LF  
Sbjct: 443 TEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEK 502

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
           M+   + PDD TF  ++ ACSH GLV+ GL  F  M  ++ I P+++HY CVVDM GRAG
Sbjct: 503 MLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAG 562

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSN 422
            +++A   I EMP + +  +W +LL++CRIH N  + +++   L+  +      + L+SN
Sbjct: 563 RIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISN 622

Query: 423 TFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            FAG+ +W+D  ++R  ++ +GL+K  GCSWIEV   +
Sbjct: 623 LFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKV 660



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/383 (21%), Positives = 189/383 (49%), Gaps = 10/383 (2%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNS-LLHFYVTVKDIFSAHQIFNSVVFPD 75
           L+AC      +    +H  V       + F+ N+ ++  Y        +  +F+ +   +
Sbjct: 112 LQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKN 171

Query: 76  VVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIH 131
           +  W  I+S  ++    ++A+ +F  +    + KP+  TL  V+ AC+ L+   LG+ IH
Sbjct: 172 LFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIH 231

Query: 132 AHSLRNLNENNIILDNAILDFYIRCGSL-ASCGYLFVKMPKRNVVSWTTMIGGYAERGFC 190
             + +    +++ + NA++  Y +CG +  +   +F  M  + V SW  ++ GYA+    
Sbjct: 232 GMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDP 291

Query: 191 KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGN 250
           ++A+ ++ +M  +   +P+  T+ ++L ACS + +L +G+ +H + + R  L+V   +G 
Sbjct: 292 RKALDLYLQMTDSG-LDPDWFTIGSLLLACSRMKSLHYGEEIHGF-ALRNGLAVDPFIGI 349

Query: 251 AVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP 310
           +++++Y+ CG    A  +F+ + ++  +SW+ +I+G + NG   +A+ LF  M+ + + P
Sbjct: 350 SLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQP 409

Query: 311 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAF 370
            ++  + +  ACS    +  G  L    +    +   +   + ++DMY + G +  ++  
Sbjct: 410 YEIAIMCVCGACSQLSALRLGKEL-HCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRI 468

Query: 371 IREMPIEAEWSVWGALLNACRIH 393
              +  E + + W  ++    IH
Sbjct: 469 FDRLR-EKDVASWNVIIAGYGIH 490



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 127/250 (50%), Gaps = 9/250 (3%)

Query: 83  ISGLSKCGFHKEAIDMF------CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAH-SL 135
           I  L + G  KEA+D          +D    +  +  +L AC      ++G+ +H   S 
Sbjct: 74  IKKLCESGNLKEALDFLQRESDDVVLDSAQRSEAMGVLLQACGQRKDIEVGRRLHEMVSA 133

Query: 136 RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVS 195
                N+ +L+  I+  Y  CGS +    +F K+ ++N+  W  ++  Y      ++A+S
Sbjct: 134 STQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMS 193

Query: 196 VFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINM 255
           +F E+    E +P+  TL  V+ AC+ +  L  G+ +H  ++T+ DL     VGNA+I M
Sbjct: 194 IFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHG-MATKMDLVSDVFVGNALIAM 252

Query: 256 YVKCGDVGIAIQ-VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVT 314
           Y KCG V  A++ VF+++  K   SW+ ++ G A N   R+AL L+  M  + + PD  T
Sbjct: 253 YGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFT 312

Query: 315 FIALISACSH 324
             +L+ ACS 
Sbjct: 313 IGSLLLACSR 322


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 163/491 (33%), Positives = 259/491 (52%), Gaps = 41/491 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLH-DIFIQNSLLHFYVTVKDIFSAHQI 67
           N  T   A+ AC+     +   EIH + I+   L  D+ + NSL+ +Y   + +  A + 
Sbjct: 361 NSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRK 420

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDM-----FCGID------------------- 103
           F  +   D+VSW  +++G +  G H+EAI++     F GI+                   
Sbjct: 421 FGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDG 480

Query: 104 --------------VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAI 149
                         + PN  T+   L+AC  + + KLGK IH + LRN  E +  + +A+
Sbjct: 481 KAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSAL 540

Query: 150 LDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN 209
           +  Y  C SL     +F ++  R+VV W ++I   A+ G    A+ + +EM  +   E N
Sbjct: 541 ISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSN-VEVN 599

Query: 210 EATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF 269
             T+V+ L ACS ++AL  GK +H +I  R  L   N + N++I+MY +CG +  + ++F
Sbjct: 600 TVTMVSALPACSKLAALRQGKEIHQFI-IRCGLDTCNFILNSLIDMYGRCGSIQKSRRIF 658

Query: 270 NMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVD 329
           +++  +D +SW+ +IS   M+G G  A+ LF       + P+ +TF  L+SACSH GL++
Sbjct: 659 DLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIE 718

Query: 330 QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           +G   FK M T Y + P ++ YAC+VD+  RAG   E   FI +MP E   +VWG+LL A
Sbjct: 719 EGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGA 778

Query: 390 CRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKT 449
           CRIH N ++ +   + L   +  S G + LM+N ++ A RWED  KIR  ++  G+ K  
Sbjct: 779 CRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPP 838

Query: 450 GCSWIEVNPSI 460
           GCSWIEV   +
Sbjct: 839 GCSWIEVKRKL 849



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 182/363 (50%), Gaps = 51/363 (14%)

Query: 74  PDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAI 130
           P+VVSWT +I+G  + G+  EA+ +F  +    VKPN+ T+ S +SAC++L   + G+ I
Sbjct: 325 PNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREI 384

Query: 131 HAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           H + ++    ++++++ N+++D+Y +C S+      F  + + ++VSW  M+ GYA RG 
Sbjct: 385 HGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGS 444

Query: 190 CKEAVSVFQEME----------------------------------KTKEAEPNEATLVN 215
            +EA+ +  EM+                                   +   +PN  T+  
Sbjct: 445 HEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISG 504

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
            L+AC  +  L  GK +H Y+  R  + +S  VG+A+I+MY  C  + +A  VF+ L+ +
Sbjct: 505 ALAACGQVRNLKLGKEIHGYV-LRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTR 563

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG---- 331
           D + W+++IS  A +G    AL L   M ++ V  + VT ++ + ACS    + QG    
Sbjct: 564 DVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIH 623

Query: 332 -LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 390
             I+   + T   I+  +      +DMYGR G ++++      MP + +   W  +++  
Sbjct: 624 QFIIRCGLDTCNFILNSL------IDMYGRCGSIQKSRRIFDLMP-QRDLVSWNVMISVY 676

Query: 391 RIH 393
            +H
Sbjct: 677 GMH 679



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 161/338 (47%), Gaps = 38/338 (11%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +H+ F +  KACS    ++   +++ +++  G   +  ++ S+L  ++    +  A + F
Sbjct: 189 DHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFF 248

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
             + F DV  W  ++SG +  G  K+A+                               K
Sbjct: 249 EEIEFKDVFMWNIMVSGYTSKGEFKKAL-------------------------------K 277

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-----KRNVVSWTTMIGG 183
            I    L  +  + +   NAI+  Y + G        F++M      K NVVSWT +I G
Sbjct: 278 CISDMKLSGVKPDQVTW-NAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAG 336

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
             + G+  EA+SVF++M   +  +PN  T+ + +SAC+++S L  G+ +H Y     +L 
Sbjct: 337 SEQNGYDFEALSVFRKM-VLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELD 395

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
              LVGN++++ Y KC  V +A + F M+   D +SW+ +++G A+ G   +A++L S M
Sbjct: 396 SDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEM 455

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 341
               + PD +T+  L++  +  G     L  F+ M ++
Sbjct: 456 KFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSM 493



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 131/266 (49%), Gaps = 2/266 (0%)

Query: 113 SVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKR 172
           S+L  C  L + +LG  +HA  + N  +    L + +L+ Y + G +     +F KM +R
Sbjct: 94  SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSER 153

Query: 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYV 232
           NV SWT ++  Y   G  +E + +F  M   +   P+      V  ACS +     GK V
Sbjct: 154 NVFSWTAIMEMYCGLGDYEETIKLFYLM-VNEGVRPDHFVFPKVFKACSELKNYRVGKDV 212

Query: 233 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
           + Y+ +      ++ V  ++++M++KCG + IA + F  + +KD   W+ ++SG    G 
Sbjct: 213 YDYMLS-IGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGE 271

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
            ++AL+  S M ++ V PD VT+ A+IS  +  G  ++    F  M  + +  P +  + 
Sbjct: 272 FKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWT 331

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEA 378
            ++    + G   EA +  R+M +E 
Sbjct: 332 ALIAGSEQNGYDFEALSVFRKMVLEG 357


>gi|222619002|gb|EEE55134.1| hypothetical protein OsJ_02921 [Oryza sativa Japonica Group]
          Length = 493

 Score =  288 bits (736), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 164/460 (35%), Positives = 261/460 (56%), Gaps = 8/460 (1%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           + ++Y+   A+ A +         + HA  ++     D F+ N+L++ Y +     SA  
Sbjct: 2   TLDNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARL 61

Query: 67  IFNSVV--FPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSL 121
           + +S      DVVSW TII+G  + G   +A+  F  +    V+ +  TL++VL AC+  
Sbjct: 62  VLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACART 121

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
            + K+G   HA  + N  E N  + ++++  Y +CG +     +F +MP+RNVV WT+MI
Sbjct: 122 GAMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMI 181

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
            G  + G  KEAV +F++M+     + ++AT+  V+S+C  + AL  G+Y+H+Y    + 
Sbjct: 182 AGCTQSGRFKEAVDLFRDMQ-IAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDG-HG 239

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
           L     V N++I+MY KCGDV  A Q+F+ L  +D  +W+ +I G AMNG   +AL LF+
Sbjct: 240 LGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFA 299

Query: 302 LMI-INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
            M   + V P++V F+ +++ACSHGGLV+QG   F  MS VY +VP+++HY C+VD+ GR
Sbjct: 300 QMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGR 359

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           A LL EAE FI++MP+  +  VW +LL ACR      + +   + +   +    G   L+
Sbjct: 360 AKLLAEAEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQLEPKRCGGHVLL 419

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           SN +A   RW D N +R  +      KK GCS+IEV+  I
Sbjct: 420 SNVYATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEVDGCI 459


>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g15510, chloroplastic; Flags: Precursor
 gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
 gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
 gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 866

 Score =  288 bits (736), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 161/452 (35%), Positives = 259/452 (57%), Gaps = 8/452 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T T  + AC L    +   +IHA+VI  G   DI + NSL   Y+       A ++F+ +
Sbjct: 299 TLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRM 358

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
              D+VSWTT+ISG        +AID +  +D   VKP+  T+ +VLSAC++L     G 
Sbjct: 359 ERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGV 418

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H  +++    + +I+ N +++ Y +C  +     +F  +P++NV+SWT++I G     
Sbjct: 419 ELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNN 478

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
            C EA+   ++M+ T   +PN  TL   L+AC+ I AL  GK +H+++  R  + + + +
Sbjct: 479 RCFEALIFLRQMKMT--LQPNAITLTAALAACARIGALMCGKEIHAHV-LRTGVGLDDFL 535

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            NA+++MYV+CG +  A   FN    KD  SW+ +++G +  G G   ++LF  M+ + V
Sbjct: 536 PNALLDMYVRCGRMNTAWSQFNS-QKKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRV 594

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD++TFI+L+  CS   +V QGL+ F  M   Y + P ++HYACVVD+ GRAG L+EA 
Sbjct: 595 RPDEITFISLLCGCSKSQMVRQGLMYFSKMED-YGVTPNLKHYACVVDLLGRAGELQEAH 653

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
            FI++MP+  + +VWGALLNACRIH   ++ +   Q +      SVG + L+ N +A   
Sbjct: 654 KFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCG 713

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +W +  K+R  ++  GL    GCSW+EV   +
Sbjct: 714 KWREVAKVRRMMKENGLTVDAGCSWVEVKGKV 745



 Score =  174 bits (441), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 98/296 (33%), Positives = 164/296 (55%), Gaps = 5/296 (1%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           YTF   L+ C       +  E+H HV+ YG+  DI + N+L+  YV   D+ SA  +F+ 
Sbjct: 197 YTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDR 256

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKLG 127
           +   D++SW  +ISG  + G   E +++F    G+ V P+  TL SV+SAC  L   +LG
Sbjct: 257 MPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLG 316

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           + IHA+ +      +I + N++   Y+  GS      LF +M ++++VSWTTMI GY   
Sbjct: 317 RDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYN 376

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
               +A+  ++ M++    +P+E T+  VLSAC+++  L  G  +H  ++ +  L    +
Sbjct: 377 FLPDKAIDTYRMMDQ-DSVKPDEITVAAVLSACATLGDLDTGVELHK-LAIKARLISYVI 434

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           V N +INMY KC  +  A+ +F+ +  K+ ISW+++I+GL +N    +AL     M
Sbjct: 435 VANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQM 490



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 201/390 (51%), Gaps = 18/390 (4%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           F   ++ C      ++  ++++  +       + + N+ L  +V   ++  A  +F  + 
Sbjct: 97  FVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVELGNAFLAMFVRFGNLVDAWYVFGKMS 156

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGK 128
             ++ SW  ++ G +K G+  EA+ ++  +     VKP+  T   VL  C  +     GK
Sbjct: 157 ERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGK 216

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H H +R   E +I + NA++  Y++CG + S   LF +MP+R+++SW  MI GY E G
Sbjct: 217 EVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENG 276

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSNL 247
            C E + +F  M +    +P+  TL +V+SAC  +     G+ +H+Y I+T + + +S  
Sbjct: 277 MCHEGLELFFAM-RGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDIS-- 333

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V N++  MY+  G    A ++F+ +  KD +SW+T+ISG   N    +A+  + +M  ++
Sbjct: 334 VCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDS 393

Query: 308 VFPDDVTFIALISACSHGGLVDQGLIL----FKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
           V PD++T  A++SAC+  G +D G+ L     KA    Y IV        +++MY +   
Sbjct: 394 VKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANN-----LINMYSKCKC 448

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           +++A      +P +   S W +++   R++
Sbjct: 449 IDKALDIFHNIPRKNVIS-WTSIIAGLRLN 477



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 150/295 (50%), Gaps = 5/295 (1%)

Query: 83  ISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLN 139
           + GL   G  +EA+ +   +    V  + +  V+++  C    + + G  +++ +L +++
Sbjct: 66  LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMS 125

Query: 140 ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQE 199
              + L NA L  ++R G+L    Y+F KM +RN+ SW  ++GGYA++G+  EA+ ++  
Sbjct: 126 SLGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHR 185

Query: 200 MEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKC 259
           M      +P+  T   VL  C  I  L+ GK VH ++  RY   +   V NA+I MYVKC
Sbjct: 186 MLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHV-VRYGYELDIDVVNALITMYVKC 244

Query: 260 GDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALI 319
           GDV  A  +F+ +  +D ISW+ +ISG   NG   + L+LF  M   +V PD +T  ++I
Sbjct: 245 GDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVI 304

Query: 320 SACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
           SAC   G    G  +   + T    V  +     +  MY  AG   EAE     M
Sbjct: 305 SACELLGDRRLGRDIHAYVITTGFAV-DISVCNSLTQMYLNAGSWREAEKLFSRM 358


>gi|255565124|ref|XP_002523554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537116|gb|EEF38749.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 611

 Score =  288 bits (736), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 152/425 (35%), Positives = 241/425 (56%), Gaps = 13/425 (3%)

Query: 40  GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAI--- 96
           G   D+   N+L+  Y  +     A ++   +  P+++SWTT+IS  SK G H  ++   
Sbjct: 192 GFEPDVVTWNTLMDAYCQMGRFDEAWEVLKQIEQPNIISWTTLISSYSKIGEHDMSLRVF 251

Query: 97  -DMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA---ILDF 152
            DM     V P+ + L SVL +C  + + + GK IH +  + +  N +   +A   +L  
Sbjct: 252 QDMIIREVVSPDLDCLCSVLVSCRHIGALRSGKEIHGYGTK-METNTVFYSSAGAALLTM 310

Query: 153 YIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEAT 212
           Y +CG +     +F  M K ++V+W  MI G+ E    K+A+  F+EM++  + + ++ T
Sbjct: 311 YAKCGRIQDAINVFELMDKSDIVTWNAMILGFVELDLGKQAIECFREMQRM-DIKNDQTT 369

Query: 213 LVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 272
           +  +L  C     L +G  +H+Y+     LS    V NAVI+MY KCG V  A  +F  +
Sbjct: 370 ISTILPVCD----LQYGNPIHAYVRKSITLSSVVTVWNAVIHMYCKCGCVRSAYTIFCSM 425

Query: 273 AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL 332
             KD +SW+T+I G  M+G G+ AL+L   MI++ +FP+  TF +++SACSH GLVD+G 
Sbjct: 426 PNKDVVSWNTMIGGFGMHGHGQAALKLLKEMILSGIFPNSTTFTSVLSACSHSGLVDEGF 485

Query: 333 ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI 392
            LF++M+  Y I P+M+HY+C+VDM  RAG   +A  FI +MP+E + S+WGALL ACR 
Sbjct: 486 RLFRSMTEDYSITPRMEHYSCIVDMLARAGQFADAVTFIHKMPLEPDKSIWGALLAACRA 545

Query: 393 HRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCS 452
           ++N +      + L+  +    G +  +SN +A A RW+D  ++R EI   GL K +G S
Sbjct: 546 YQNLDFGRLAAEQLIRMEPKCAGHYVTLSNIYARAGRWDDAGRVRKEIEGKGLVKPSGQS 605

Query: 453 WIEVN 457
            IE  
Sbjct: 606 LIETR 610



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 177/402 (44%), Gaps = 42/402 (10%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           ++Y F + L+AC+     +  + IH  VI  G   ++ + NSL+  YV   +  SA  +F
Sbjct: 95  DNYVFPKVLRACTQLLWFEGGIWIHKDVIVCGCESNLQVCNSLIDMYVKCGNARSARLVF 154

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
             +   D+ SW ++ISG    G    A+++                   C  L       
Sbjct: 155 EEMEERDLFSWNSMISGYVSNGLADLAVELL-----------------NCMRLDGF---- 193

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
                      E +++  N ++D Y + G       +  ++ + N++SWTT+I  Y++ G
Sbjct: 194 -----------EPDVVTWNTLMDAYCQMGRFDEAWEVLKQIEQPNIISWTTLISSYSKIG 242

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV-SNL 247
               ++ VFQ+M   +   P+   L +VL +C  I AL  GK +H Y +     +V  + 
Sbjct: 243 EHDMSLRVFQDMIIREVVSPDLDCLCSVLVSCRHIGALRSGKEIHGYGTKMETNTVFYSS 302

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
            G A++ MY KCG +  AI VF ++   D ++W+ +I G      G+QA++ F  M    
Sbjct: 303 AGAALLTMYAKCGRIQDAINVFELMDKSDIVTWNAMILGFVELDLGKQAIECFREMQRMD 362

Query: 308 VFPDDVTFIALISAC--SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
           +  D  T   ++  C   +G  +   +     +S+V  +      +  V+ MY + G + 
Sbjct: 363 IKNDQTTISTILPVCDLQYGNPIHAYVRKSITLSSVVTV------WNAVIHMYCKCGCVR 416

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLV 407
            A      MP +   S W  ++    +H + +   ++ ++++
Sbjct: 417 SAYTIFCSMPNKDVVS-WNTMIGGFGMHGHGQAALKLLKEMI 457



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 138/319 (43%), Gaps = 41/319 (12%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           L+ CS         +IH  +   G   D F+   L+  Y     +FSA ++F+ +  P+V
Sbjct: 2   LQLCSNLKSLHAGKQIHQQITVSGWGKDPFMLTKLIQMYADCDHLFSAQRLFDKMPQPNV 61

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAH 133
            +WT I     + G + + +  +  +   DV P+      VL AC+ L+  + G  IH  
Sbjct: 62  YAWTAIFGFYLRHGMYDKCVQNYGFMKYSDVLPDNYVFPKVLRACTQLLWFEGGIWIHKD 121

Query: 134 SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
            +    E+N+ + N+++D Y++CG+  S   +F +M +R++ SW +MI GY   G    A
Sbjct: 122 VIVCGCESNLQVCNSLIDMYVKCGNARSARLVFEEMEERDLFSWNSMISGYVSNGLADLA 181

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVI 253
           V +   M +    EP+  T                                     N ++
Sbjct: 182 VELLNCM-RLDGFEPDVVTW------------------------------------NTLM 204

Query: 254 NMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF-PDD 312
           + Y + G    A +V   +   + ISW+T+IS  +  G    +L++F  MII  V  PD 
Sbjct: 205 DAYCQMGRFDEAWEVLKQIEQPNIISWTTLISSYSKIGEHDMSLRVFQDMIIREVVSPDL 264

Query: 313 VTFIALISACSHGGLVDQG 331
               +++ +C H G +  G
Sbjct: 265 DCLCSVLVSCRHIGALRSG 283



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 118/254 (46%), Gaps = 17/254 (6%)

Query: 114 VLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
           +L  CS+L S   GK IH     +    +  +   ++  Y  C  L S   LF KMP+ N
Sbjct: 1   MLQLCSNLKSLHAGKQIHQQITVSGWGKDPFMLTKLIQMYADCDHLFSAQRLFDKMPQPN 60

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
           V +WT + G Y   G   + V  +  M K  +  P+      VL AC+ +     G ++H
Sbjct: 61  VYAWTAIFGFYLRHGMYDKCVQNYGFM-KYSDVLPDNYVFPKVLRACTQLLWFEGGIWIH 119

Query: 234 SYISTRYDLSV----SNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
                  D+ V    SNL V N++I+MYVKCG+   A  VF  +  +D  SW+++ISG  
Sbjct: 120 K------DVIVCGCESNLQVCNSLIDMYVKCGNARSARLVFEEMEERDLFSWNSMISGYV 173

Query: 289 MNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQM 348
            NG    A++L + M ++   PD VT+  L+ A    G  D+   + K +       P +
Sbjct: 174 SNGLADLAVELLNCMRLDGFEPDVVTWNTLMDAYCQMGRFDEAWEVLKQIEQ-----PNI 228

Query: 349 QHYACVVDMYGRAG 362
             +  ++  Y + G
Sbjct: 229 ISWTTLISSYSKIG 242


>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 733

 Score =  288 bits (736), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 164/459 (35%), Positives = 255/459 (55%), Gaps = 11/459 (2%)

Query: 8   YNHYTFTQALKAC---SLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           Y+ +TF  ALKA    SL H H KA  IH   I+ G     F+ N+L   Y         
Sbjct: 223 YDSHTFAIALKASADSSLLH-HGKA--IHTQTIKQGFDESSFVINTLATMYNKCGKPDYV 279

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSL 121
            ++F  +  PDVVSWTT+IS   + G  + A++ F  +    V PN  T  +V+S+C++L
Sbjct: 280 MRLFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANL 339

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
            + K G+ IH H LR    N + + N+I+  Y +CG L S   +F  + +++++SW+T+I
Sbjct: 340 AAAKWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTII 399

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
             Y++ G+ KEA      M + +  +PNE  L +VLS C S++ L  GK VH+++     
Sbjct: 400 SVYSQGGYAKEAFDYLSWMRR-EGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLC-IG 457

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
           +    +V +A+I+MY KCG V  A ++FN +   D ISW+ +I+G A +G  ++A+ LF 
Sbjct: 458 IDHEAMVHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMINGYAEHGYSQEAINLFE 517

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            +    + PD V FI +++AC+H G+VD G   F  M+ VY I P  +HY C++D+  RA
Sbjct: 518 KISSVGLKPDYVMFIGVLTACNHAGMVDLGFYYFMLMTNVYRISPSKEHYGCLIDLLCRA 577

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           G L EAE  IR MP   +  VW  LL ACR+H + +      + L+     S GT   ++
Sbjct: 578 GRLSEAEHIIRSMPFHTDDVVWSTLLRACRVHGDVDRGRWTAEQLLQLDPNSAGTHITLA 637

Query: 422 NTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           N +A   RW++   IR  ++  G+ K+ G SW+ VN  +
Sbjct: 638 NIYAAKGRWKEAAHIRKLMKSKGVIKERGWSWVNVNDQL 676



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 152/289 (52%), Gaps = 5/289 (1%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S N YTF   + +C+     +   +IH HV+  G ++ + + NS++  Y     + SA  
Sbjct: 323 SPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASL 382

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVS 123
           +F+ +   D++SW+TIIS  S+ G+ KEA D    +     KPN   L SVLS C S+  
Sbjct: 383 VFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMAL 442

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            + GK +HAH L    ++  ++ +AI+  Y +CGS+     +F  M   +++SWT MI G
Sbjct: 443 LEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMING 502

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           YAE G+ +EA+++F+++      +P+    + VL+AC+    +  G Y    ++  Y +S
Sbjct: 503 YAEHGYSQEAINLFEKISSVG-LKPDYVMFIGVLTACNHAGMVDLGFYYFMLMTNVYRIS 561

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDKISWSTVISGLAMNG 291
            S      +I++  + G +  A  +   + +  D + WST++    ++G
Sbjct: 562 PSKEHYGCLIDLLCRAGRLSEAEHIIRSMPFHTDDVVWSTLLRACRVHG 610



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 196/422 (46%), Gaps = 48/422 (11%)

Query: 9   NHYTFTQALKACS--LAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           N Y  T     C   +  P Q+    +A+ +     H++   NS L   V    +  A  
Sbjct: 24  NRYILTGTATECRELIQQPIQEQPAENAYSV-----HNMLELNSELKQLVKQGQLCKARY 78

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANT---LVSV-LSACSSLV 122
           +F+ +   D +SWTT+I+G        EA+ +F  + V P       ++SV L AC+  V
Sbjct: 79  MFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMISVALKACALGV 138

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
           +   G+ +H  S+++   +++ + +A++D Y++ G +     +F KM  RNVVSWT +I 
Sbjct: 139 NICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAIIA 198

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
           G    G+  E +  F EM ++K    +  T    L A +  S L  GK +H+  + +   
Sbjct: 199 GLVHAGYNMEGLLYFSEMWRSKVGYDSH-TFAIALKASADSSLLHHGKAIHTQ-TIKQGF 256

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
             S+ V N +  MY KCG     +++F  +   D +SW+T+IS     G    A++ F  
Sbjct: 257 DESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKR 316

Query: 303 MIINAVFPDDVTFIALISACS-----------HGGLVDQGLI-----------------L 334
           M  + V P+  TF A+IS+C+           HG ++  GL+                 L
Sbjct: 317 MRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSVANSIITLYSKCGL 376

Query: 335 FKAMSTVYEIVPQMQ--HYACVVDMYGRAGLLEEAEAFI----REMPIEAEWSVWGALLN 388
            K+ S V+  + +     ++ ++ +Y + G  +EA  ++    RE P   E+++  ++L+
Sbjct: 377 LKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPKPNEFAL-SSVLS 435

Query: 389 AC 390
            C
Sbjct: 436 VC 437


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  288 bits (736), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 155/457 (33%), Positives = 266/457 (58%), Gaps = 8/457 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +  TF   L A +     Q   ++H  ++E G   +  +  SL+  Y    DI  A  IF
Sbjct: 147 DKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIF 206

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           + +   +VV+WT +I+G ++ G    A+++   +   +V PN  T  S+L  C++  + +
Sbjct: 207 DRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALE 266

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK +H + +++     + + N+++  Y +CG L     LF  +P R+VV+WT M+ GYA
Sbjct: 267 HGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYA 326

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSV 244
           + GF  EA+++F+ M++ +  +P++ T  +VL++CSS + L  GK +H   +   Y+L V
Sbjct: 327 QLGFHDEAINLFRRMQQ-QGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDV 385

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGL-AMNGCGRQALQLFSLM 303
              + +A+++MY KCG +  A  VFN ++ ++ ++W+ +I+G  A +G  R+AL+ F  M
Sbjct: 386 --YLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQM 443

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
               + PD VTF +++SAC+H GLV++G   F++M   Y I P ++HY+C VD+ GRAG 
Sbjct: 444 KKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGH 503

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           LEEAE  I  MP     SVWGALL+ACR+H + E  +R  ++++       G +  +S+ 
Sbjct: 504 LEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSI 563

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +A A R+ED  K+R  + +  + K+ G SWIEV+  +
Sbjct: 564 YAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKV 600



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 108/411 (26%), Positives = 216/411 (52%), Gaps = 16/411 (3%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           F   L+ C+     ++  E+HA +++ G   + +++N+LL  Y     +  A ++F+S+ 
Sbjct: 50  FRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIR 109

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHKLGKA 129
             ++VSWT +I        + EA   +  + +   KP+  T VS+L+A ++    +LG+ 
Sbjct: 110 DRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQK 169

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           +H   +    E    +  +++  Y +CG ++    +F ++P++NVV+WT +I GYA++G 
Sbjct: 170 VHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQ 229

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSNLV 248
              A+ + + M++  E  PN+ T  ++L  C++ +AL  GK VH Y I + Y   +   V
Sbjct: 230 VDVALELLETMQQA-EVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGREL--WV 286

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            N++I MY KCG +  A ++F+ L ++D ++W+ +++G A  G   +A+ LF  M    +
Sbjct: 287 VNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGI 346

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTV-YEIVPQMQHYACVVDMYGRAGLLEEA 367
            PD +TF +++++CS    + +G  + + +    Y +   +Q  + +V MY + G +++A
Sbjct: 347 KPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQ--SALVSMYAKCGSMDDA 404

Query: 368 EAFIREMPIEAEWSVWGALLNAC-----RIHRNDEMFDRIRQDLVNKKGVS 413
                +M  E     W A++  C     R     E FD++++  +    V+
Sbjct: 405 SLVFNQMS-ERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVT 454



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 165/335 (49%), Gaps = 23/335 (6%)

Query: 83  ISGLSKCGFHKEAIDMFCGIDVKPN---ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLN 139
           +S L K G  KEA+ +   + ++     ++    +L  C+ L S + G+ +HA  L++  
Sbjct: 19  VSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 78

Query: 140 ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQE 199
           + N  L+N +L  Y +CGSL     +F  +  RN+VSWT MI  +       EA   ++ 
Sbjct: 79  QPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYET 138

Query: 200 MEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKC 259
           M K    +P++ T V++L+A ++   L  G+ VH  I     L +   VG +++ MY KC
Sbjct: 139 M-KLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEI-VEAGLELEPRVGTSLVGMYAKC 196

Query: 260 GDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALI 319
           GD+  A  +F+ L  K+ ++W+ +I+G A  G    AL+L   M    V P+ +TF +++
Sbjct: 197 GDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASIL 256

Query: 320 SACSHGGLVDQGLILFKAMSTVYEIVPQMQH------YACVVDMYGRAGLLEEAEAFIRE 373
             C+    ++ G         V+  + Q  +         ++ MY + G LEEA     +
Sbjct: 257 QGCTTPAALEHG-------KKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSD 309

Query: 374 MPIEAEWSVWGALLNA-CRIHRNDE---MFDRIRQ 404
           +P   +   W A++    ++  +DE   +F R++Q
Sbjct: 310 LP-HRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQ 343


>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
 gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
          Length = 549

 Score =  288 bits (736), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 152/481 (31%), Positives = 265/481 (55%), Gaps = 26/481 (5%)

Query: 1   MLSC--PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV 58
           M +C  P S    +   ALK+C+          +HA  I  G   D F  N+LL+ Y  +
Sbjct: 40  MRACAAPRSSVPASLPAALKSCAALGLSALGASLHALAIRSGAFADRFTANALLNLYCKL 99

Query: 59  K-------------------DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF 99
                                + S  ++F+ ++  DVVSW T++ G ++ G H EA+ + 
Sbjct: 100 PCSYLHSTGVTSVGGTGSSTALESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALVLV 159

Query: 100 CGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRC 156
             +     +P++ TL SVL   +     K G  +H  ++RN  +N++ + ++++D Y  C
Sbjct: 160 RKMWREGFRPDSFTLSSVLPIFAECADVKRGSEVHGFAVRNGFDNDVFVGSSLIDMYANC 219

Query: 157 GSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNV 216
                   +F  +P R+ + W +++ G A+ G  +EA+ +F+ M +T    P   T  ++
Sbjct: 220 TRTDYSVKVFDNLPVRDPILWNSVLAGCAQNGSVEEALGIFRRMLQTG-VRPVPVTFSSL 278

Query: 217 LSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD 276
           +  C ++++L FGK +H+Y+  R     +  + +++I+MY KCG++ IA  +F+ +   D
Sbjct: 279 IPVCGNLASLRFGKQLHAYV-IRGGFEDNVFISSSLIDMYCKCGEISIAHHIFDRMCSPD 337

Query: 277 KISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFK 336
            +SW+ +I G A++G  R+AL LF  M +    P+ +TF+A+++ACSH GLVD+G   FK
Sbjct: 338 VVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFK 397

Query: 337 AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND 396
           +MS  Y IVP ++H A + D+ GRAG L+EA  FI +M I+   SVW  LL ACR+H+N 
Sbjct: 398 SMSDHYGIVPTLEHCAALADILGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNT 457

Query: 397 EMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
            + + + + ++  +  S+G+  ++SN ++ + RW +   +R  +R+ G+KK   CSWIEV
Sbjct: 458 MLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHLRKSMRKKGMKKDPACSWIEV 517

Query: 457 N 457
            
Sbjct: 518 K 518



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 21/185 (11%)

Query: 167 VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN-EATLVNVLSACSSISA 225
           V  P    +SW   I   A +G  ++A+S+F  M        +  A+L   L +C+++  
Sbjct: 7   VYTPWPPPLSWAHQIRMAAAQGHFRDAISLFLRMRACAAPRSSVPASLPAALKSCAALGL 66

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVK-------------CGDVGIAI------ 266
            + G  +H+ ++ R          NA++N+Y K              G  G +       
Sbjct: 67  SALGASLHA-LAIRSGAFADRFTANALLNLYCKLPCSYLHSTGVTSVGGTGSSTALESVR 125

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
           +VF+ +  +D +SW+T++ G A  G   +AL L   M      PD  T  +++   +   
Sbjct: 126 KVFDEMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAECA 185

Query: 327 LVDQG 331
            V +G
Sbjct: 186 DVKRG 190


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  287 bits (735), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 155/451 (34%), Positives = 257/451 (56%), Gaps = 7/451 (1%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           +++ L  C+     ++   IHAH+       D+ + N +L+ Y     +  A  +F+ + 
Sbjct: 108 YSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMP 167

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLVSHKLGKA 129
             D+VSWT +ISG S+ G   EA+ +F     +  +PN  TL S+L A  +  S   G+ 
Sbjct: 168 TKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQ 227

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           +HA SL+   + N+ + +++LD Y R   +     +F  +  +NVVSW  +I G+A +G 
Sbjct: 228 LHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGE 287

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
            +  + +F +M + +  EP   T  +VL AC+S  +L  GK+VH+++       ++  +G
Sbjct: 288 GEHVMRLFXQMLR-QGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQPIA-YIG 344

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
           N +I+MY K G +  A +VF  L  +D +SW+++ISG A +G G +ALQLF  M+   V 
Sbjct: 345 NTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQ 404

Query: 310 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEA 369
           P+++TF+++++ACSH GL+D+G   F+ M   ++I  Q+ H+  VVD+ GRAG L EA  
Sbjct: 405 PNEITFLSVLTACSHSGLLDEGQYYFELMKK-HKIEAQVAHHVTVVDLLGRAGRLNEANK 463

Query: 370 FIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADR 429
           FI EMPI+   +VWGALL ACR+H+N ++     + +        G   L+SN +A A R
Sbjct: 464 FIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGR 523

Query: 430 WEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
             D  K+R  ++  G+KK+  CSW+E+   +
Sbjct: 524 LSDAAKVRKMMKESGVKKEPACSWVEIENEV 554



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 166/296 (56%), Gaps = 10/296 (3%)

Query: 100 CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSL 159
           CG  ++P       +L+ C+ L   K G+AIHAH   +  E++++L N IL+ Y +CGSL
Sbjct: 98  CG-SLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSL 156

Query: 160 ASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
                LF KMP +++VSWT +I GY++ G   EA+++F +M      +PNE TL ++L A
Sbjct: 157 EEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLG-FQPNEFTLSSLLKA 215

Query: 220 CSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS 279
             +  +   G+ +H++ S +Y   ++  VG+++++MY +   +  A  +FN LA K+ +S
Sbjct: 216 SGTGPSDHHGRQLHAF-SLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVS 274

Query: 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMS 339
           W+ +I+G A  G G   ++LF  M+     P   T+ +++ AC+  G ++QG  +    +
Sbjct: 275 WNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVH---A 330

Query: 340 TVYEIVPQMQHYA--CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
            V +   Q   Y    ++DMY ++G +++A+   R + ++ +   W ++++    H
Sbjct: 331 HVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRL-VKQDIVSWNSIISGYAQH 385


>gi|147805932|emb|CAN74403.1| hypothetical protein VITISV_043633 [Vitis vinifera]
          Length = 841

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 149/443 (33%), Positives = 249/443 (56%), Gaps = 26/443 (5%)

Query: 22  LAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTT 81
           LA    K   +HAHVI+ G   D  + N+LL  Y  +  + S  +IF+ +   D++SW T
Sbjct: 376 LASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNT 435

Query: 82  IISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNL 138
           +I  L++     +A ++F  +   ++KPN+ T++S+L+AC  +     G++IH + +++ 
Sbjct: 436 MILALARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHS 495

Query: 139 NENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQ 198
            E N  L  A+ D Y+ CG  A+   LF   P R+++SW  MI                 
Sbjct: 496 IEINQPLRTALADMYMNCGDEATARDLFEGCPDRDLISWNAMI----------------- 538

Query: 199 EMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR-YDLSVSNLVGNAVINMYV 257
                 +AEPN  T++NVLS+ + ++ L  G+ +H+Y++ R + L +   + NA I MY 
Sbjct: 539 -----XKAEPNSVTIINVLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYA 593

Query: 258 KCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIA 317
           +CG +  A  +F  L  ++ ISW+ +I+G  MNG G  A+  FS M+ +   P+ VTF++
Sbjct: 594 RCGSLQSAENIFKTLPKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVS 653

Query: 318 LISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIE 377
           ++SACSH G ++ GL LF +M   + + P++ HY+C+VD+  R G ++EA  FI  MPIE
Sbjct: 654 VLSACSHSGFIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIE 713

Query: 378 AEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIR 437
            + SVW ALL++CR + + +    I + L   + ++ G + L+SN +A A  W +  +IR
Sbjct: 714 PDASVWRALLSSCRAYSDAKQAKTIFEKLDKLEPMNAGNYVLLSNVYATAGLWLEVRRIR 773

Query: 438 DEIRRMGLKKKTGCSWIEVNPSI 460
             ++  GL+K  G SWI V   +
Sbjct: 774 TWLKEKGLRKPPGISWIIVKNQV 796



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 189/380 (49%), Gaps = 28/380 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML     ++  T   A++AC+     +   +IH   I++  + D++I N+LL+ Y     
Sbjct: 253 MLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGS 312

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           + S+HQ+F SV   D   W ++IS  +  G H+EA+D+F  +    VK +  T+V +LS 
Sbjct: 313 LESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSM 372

Query: 118 CSSLVSHKL-GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
           C  L S  L GK++HAH +++    +  L NA+L  Y     + S   +F +M   +++S
Sbjct: 373 CEELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIIS 432

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           W TMI   A      +A  +F+ M ++ E +PN  T++++L+AC  ++ L FG+ +H Y+
Sbjct: 433 WNTMILALARNTLRAQACELFERMRES-EIKPNSYTIISILAACEDVTCLDFGRSIHGYV 491

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
             ++ + ++  +  A+ +MY+ CGD   A  +F     +D ISW+               
Sbjct: 492 -MKHSIEINQPLRTALADMYMNCGDEATARDLFEGCPDRDLISWNA-------------- 536

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV-YEIVPQMQHYACVV 355
                  +I    P+ VT I ++S+ +H   + QG  L   ++   + +   +      +
Sbjct: 537 -------MIXKAEPNSVTIINVLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFI 589

Query: 356 DMYGRAGLLEEAEAFIREMP 375
            MY R G L+ AE   + +P
Sbjct: 590 TMYARCGSLQSAENIFKTLP 609



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 167/320 (52%), Gaps = 7/320 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N+ T    LKAC+  +  ++   IH  +     + D+ +  +++ FY     +  A  +F
Sbjct: 59  NNTTLPLVLKACAAQNAVERGKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVF 118

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           +++   DVV W  ++ G    G ++EA+ +   +   +++PN+ T+V++L AC      +
Sbjct: 119 DAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELR 178

Query: 126 LGKAIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           LG+ +H + LRN + ++N  +  A++ FY+R   +     LF  M  RN+VSW  MI GY
Sbjct: 179 LGRGVHGYCLRNGMFDSNPHVATALIGFYLRF-DMRVLPLLFDLMVVRNIVSWNAMISGY 237

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
            + G   +A+ +F +M    E + +  T++  + AC+ + +L  GK +H  ++ +++   
Sbjct: 238 YDVGDYFKALELFVQM-LVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQ-LAIKFEFVE 295

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
              + NA++NMY   G +  + Q+F  +  +D   W+++IS  A  GC  +A+ LF  M 
Sbjct: 296 DLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQ 355

Query: 305 INAVFPDDVTFIALISACSH 324
              V  D+ T + ++S C  
Sbjct: 356 SEGVKKDERTVVIMLSMCEE 375



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 174/328 (53%), Gaps = 8/328 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLH-DIFIQNSLLHFYVTVKDIFSAHQI 67
           N  T    L AC  A   +    +H + +  G    +  +  +L+ FY+   D+     +
Sbjct: 160 NSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRF-DMRVLPLL 218

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSH 124
           F+ +V  ++VSW  +ISG    G + +A+++F  +   +VK +  T++  + AC+ L S 
Sbjct: 219 FDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSL 278

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           KLGK IH  +++     ++ + NA+L+ Y   GSL S   LF  +P R+   W +MI  Y
Sbjct: 279 KLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAY 338

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI-SALSFGKYVHSYISTRYDLS 243
           A  G  +EA+ +F  M+ ++  + +E T+V +LS C  + S L  GK +H+++  +  + 
Sbjct: 339 AAFGCHEEAMDLFIRMQ-SEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHV-IKSGMR 396

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           +   +GNA+++MY +   V    ++F+ +   D ISW+T+I  LA N    QA +LF  M
Sbjct: 397 IDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERM 456

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQG 331
             + + P+  T I++++AC     +D G
Sbjct: 457 RESEIKPNSYTIISILAACEDVTCLDFG 484



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 148/288 (51%), Gaps = 4/288 (1%)

Query: 102 IDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLAS 161
           + V PN  TL  VL AC++  + + GK+IH         +++ +  A++DFY +CG +  
Sbjct: 54  LGVLPNNTTLPLVLKACAAQNAVERGKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVED 113

Query: 162 CGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221
              +F  M  R+VV W  M+ GY   G  +EA+ + +EM + +   PN  T+V +L AC 
Sbjct: 114 ARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGR-ENLRPNSRTMVALLLACE 172

Query: 222 SISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWS 281
             S L  G+ VH Y         +  V  A+I  Y++  D+ +   +F+++  ++ +SW+
Sbjct: 173 GASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRF-DMRVLPLLFDLMVVRNIVSWN 231

Query: 282 TVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 341
            +ISG    G   +AL+LF  M+++ V  D VT +  + AC+  G +  G  + + ++  
Sbjct: 232 AMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQ-LAIK 290

Query: 342 YEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           +E V  +     +++MY   G LE +      +P   +  +W ++++A
Sbjct: 291 FEFVEDLYILNALLNMYSNNGSLESSHQLFESVP-NRDAPLWNSMISA 337



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 6/156 (3%)

Query: 167 VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 226
           +K PK     W ++I   A     +  +S + +ME      PN  TL  VL AC++ +A+
Sbjct: 22  IKDPKH----WNSVIKHQANLKNDQAILSAYTQMESLG-VLPNNTTLPLVLKACAAQNAV 76

Query: 227 SFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
             GK +H  I    DL     VG AV++ Y KCG V  A  VF+ ++ +D + W+ ++ G
Sbjct: 77  ERGKSIHRSIQGT-DLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYG 135

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
               GC  +A+ L   M    + P+  T +AL+ AC
Sbjct: 136 YVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLAC 171


>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 619

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 167/469 (35%), Positives = 263/469 (56%), Gaps = 22/469 (4%)

Query: 6   SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIF--S 63
           +S N +TF   +K+C+ A+  ++  E+H  V + G   + F+  +L+H Y     +F   
Sbjct: 116 ASPNCFTFPMVVKSCATANAAKEGEEVHCVVAKRGFKSNTFVGCALIHMYSLRGGVFVAD 175

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVS 123
           A+++F  +   +V +WT I++    C     A  +F   D+ P  + ++  +     +  
Sbjct: 176 AYKVFAEMRDKNVFAWTAIVAAHVACRDMVSARRLF---DLAPQRDVVLWNVVVSGYI-- 230

Query: 124 HKLGKAIHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
            +LG  + A  L   + + +++  N +L  Y   G + S   LF +MP RNV SW  +IG
Sbjct: 231 -ELGDMVAARELFDRMPDRDVMSWNTVLSGYATNGEVESFVKLFEEMPVRNVYSWNGLIG 289

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAE----------PNEATLVNVLSACSSISALSFGKYV 232
           GY   G  KEA+  F+ M    E E          PN+ T+V VL+ACS +  L  GK+V
Sbjct: 290 GYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGKWV 349

Query: 233 HSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNG 291
           H Y  S  Y  ++   VGNA+I+MY KCG +  A+ VF+ L  KD I+W+T+I+GLAM+G
Sbjct: 350 HVYAESIGYKGNL--FVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINGLAMHG 407

Query: 292 CGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY 351
               AL LF  M      PD VTF+ ++SAC+H GLV  GL+ F++M   Y IVPQ++HY
Sbjct: 408 HVADALSLFERMKRAGERPDGVTFVGILSACTHMGLVRNGLLHFQSMVDDYSIVPQIEHY 467

Query: 352 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKG 411
            C+VD+ GRAGL+++A   +R+MP+E +  +W ALL ACR+++N EM +   Q L+  + 
Sbjct: 468 GCMVDLLGRAGLIDKAVDIVRKMPMEPDAVIWAALLGACRMYKNVEMAELALQRLIELEP 527

Query: 412 VSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            + G F ++SN +    R +D  +++  +R  G +K  GCS I  N S+
Sbjct: 528 NNPGNFVMVSNIYKDLGRSQDVARLKVAMRDTGFRKVPGCSVIGCNDSM 576



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 126/307 (41%), Gaps = 53/307 (17%)

Query: 109 NTLVSVLSACSSLVS-HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFV 167
           +  +S+L  C + V  H++   I  H L    E N  +  + +    R G +     +F 
Sbjct: 23  DKFISLLRTCGTCVRLHQIQAQIVTHGL----EGNDYVTPSFITACARLGGIRRARRVFD 78

Query: 168 KMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 227
           K  + N  +W  M  GYA+     + V +F  M +   A PN  T   V+ +C++ +A  
Sbjct: 79  KTAQPNGATWNAMFRGYAQANCHLDVVVLFARMHRAG-ASPNCFTFPMVVKSCATANAAK 137

Query: 228 FGKYVHSYISTRYDLSVSNLVGNAVINMY------------------------------- 256
            G+ VH  ++ R     +  VG A+I+MY                               
Sbjct: 138 EGEEVHCVVAKR-GFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMRDKNVFAWTAIVA 196

Query: 257 --VKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD-- 312
             V C D+  A ++F++   +D + W+ V+SG    G    A +LF  M      PD   
Sbjct: 197 AHVACRDMVSARRLFDLAPQRDVVLWNVVVSGYIELGDMVAARELFDRM------PDRDV 250

Query: 313 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIR 372
           +++  ++S  +  G V+  + LF+ M      V  +  +  ++  Y R GL +EA    +
Sbjct: 251 MSWNTVLSGYATNGEVESFVKLFEEMP-----VRNVYSWNGLIGGYVRNGLFKEALECFK 305

Query: 373 EMPIEAE 379
            M +  E
Sbjct: 306 RMLVLVE 312


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 151/452 (33%), Positives = 254/452 (56%), Gaps = 26/452 (5%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L  C+ +        +H+  I+      I   N+LL  Y    D+  A ++F  +
Sbjct: 253 TIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKM 312

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
              +VVSWT++I+G ++ G    AI +   ++   VK +     S+L AC+   S   GK
Sbjct: 313 GERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGK 372

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H +   N  E+N+ + NA++D Y +CGS+     +F  M  ++++SW TMIG      
Sbjct: 373 DVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIG------ 426

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
                           E +P+  T+  +L AC+S+SAL  GK +H YI  R   S    V
Sbjct: 427 ----------------ELKPDSRTMACILPACASLSALERGKEIHGYI-LRNGYSSDRHV 469

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            NA++++YVKCG +G+A  +F+M+  KD +SW+ +ISG  M+G G +A+  F+ M    +
Sbjct: 470 ANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGI 529

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD+V+FI+++ ACSH GL++QG   F  M   + I P+++HYAC+VD+  R G L +A 
Sbjct: 530 EPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAY 589

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
            FI  +PI  + ++WGALL  CRI+ + E+ +++ + +   +  + G + L++N +A A+
Sbjct: 590 EFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAE 649

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +WE+  ++R++I + GL+K  GCSWIE+   +
Sbjct: 650 KWEEVKRMREKIGKKGLRKNPGCSWIEIKGKV 681



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 110/365 (30%), Positives = 178/365 (48%), Gaps = 51/365 (13%)

Query: 36  VIEYGHLHDIFIQNSLLHFYVTV------KDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
           V EY  + D   + S+  F + V      K   SA ++F+ +   DV+SW ++ISG    
Sbjct: 172 VSEYAKIGDF--KESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSN 229

Query: 90  GFHKEAID-----MFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
           G  +  ++     M+ GIDV  +  T++SVL  C++  +  LGKA+H+ ++++  E  I 
Sbjct: 230 GLTERGLEIYKQMMYLGIDV--DLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRIN 287

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
             N +LD Y +CG L     +F KM +RNVVSWT+MI GY   G    A+ + Q+MEK +
Sbjct: 288 FSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEK-E 346

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
             + +     ++L AC+   +L  GK VH YI    ++  +  V NA+++MY KCG +  
Sbjct: 347 GVKLDVVATTSILHACARSGSLDNGKDVHDYIKAN-NMESNLFVCNALMDMYTKCGSMDG 405

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
           A  VF+ +  KD ISW+T+I  L                      PD  T   ++ AC+ 
Sbjct: 406 ANSVFSTMVVKDIISWNTMIGELK---------------------PDSRTMACILPACAS 444

Query: 325 GGLVDQ-----GLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIE-- 377
              +++     G IL    S+   +   +      VD+Y + G+L  A      +P +  
Sbjct: 445 LSALERGKEIHGYILRNGYSSDRHVANAL------VDLYVKCGVLGLARLLFDMIPSKDL 498

Query: 378 AEWSV 382
             W+V
Sbjct: 499 VSWTV 503



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 143/329 (43%), Gaps = 74/329 (22%)

Query: 110 TLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAI----LDFYIRCGSLASCGYL 165
           T  SVL  C+   S   GK +H+     +  NN+ +D  +    +  Y  CG L     +
Sbjct: 101 TYSSVLQLCAGSKSLTDGKKVHSI----IKSNNVAVDEVLGLKLVSLYATCGDLKEGRRV 156

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEM-EKTKEAEPNE-------------- 210
           F  M K+NV  W  M+  YA+ G  KE++ +F+ M EK  E +  E              
Sbjct: 157 FDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDV 216

Query: 211 -----------------------------------ATLVNVLSACSSISALSFGKYVHSY 235
                                              AT+++VL  C++   LS GK VHS 
Sbjct: 217 ISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSL 276

Query: 236 -ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
            I + ++  ++    N +++MY KCGD+  A++VF  +  ++ +SW+++I+G   +G   
Sbjct: 277 AIKSTFERRIN--FSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSD 334

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP----QMQH 350
            A++L   M    V  D V   +++ AC+  G +D G         V++ +     +   
Sbjct: 335 GAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNG-------KDVHDYIKANNMESNL 387

Query: 351 YAC--VVDMYGRAGLLEEAEAFIREMPIE 377
           + C  ++DMY + G ++ A +    M ++
Sbjct: 388 FVCNALMDMYTKCGSMDGANSVFSTMVVK 416


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 147/460 (31%), Positives = 254/460 (55%), Gaps = 6/460 (1%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           P    HY +T  L++C  +       ++HA     G  ++  +   L+H Y     + +A
Sbjct: 42  PQPTTHYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNA 101

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSL 121
             +F+ +   ++  W  +I G +  G H  AI ++  +    ++P+  TL  VL ACS+L
Sbjct: 102 RNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSAL 161

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
            +   G++IH + +++  E ++ +  A++D Y +CG +   G +F K+  R+ V W +M+
Sbjct: 162 SAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSML 221

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
             YA+ G   E++S+ +EM       P EATLV V+S+ + ++ L +G+ +H +   R+ 
Sbjct: 222 AAYAQNGHPDESISLCREM-AANGVRPTEATLVTVISSSADVACLPYGREIHGF-GWRHG 279

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
              ++ V  A+I+MY KCG V +A+ +F  L  K  +SW+ +I+G AM+G    AL LF 
Sbjct: 280 FQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFD 339

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            M      PD +TF+ +++ACS G L+D+G  L+  M   Y I P +QHY C++D+ G  
Sbjct: 340 KMR-KEDRPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHC 398

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           G L+EA   IR M ++ +  VWGALLN+C+IH N E+ +   + L+  +    G + +++
Sbjct: 399 GQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELAELALEKLIELEPDDSGNYVILA 458

Query: 422 NTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           N +A + +WE   K+R  +    +KK   CSWIEV   ++
Sbjct: 459 NMYAQSGKWEGVEKLRQVMIDKRIKKNIACSWIEVKNKVY 498


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  287 bits (735), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 152/481 (31%), Positives = 277/481 (57%), Gaps = 36/481 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  TF+  L   S     +   +IH HV+++G +  +F+ + L+  Y  +  I  A ++F
Sbjct: 142 NRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVF 201

Query: 69  ------NSVVF-------------------------PDVVSWTTIISGLSKCGFHKEAID 97
                 N V++                          D +SWT++I+G ++ G  ++AID
Sbjct: 202 DELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAID 261

Query: 98  MFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
           +F  +   +++ +  T  SVL+AC  +++ + GK +HA+ +R   ++NI + +A++D Y 
Sbjct: 262 IFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYC 321

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           +C ++ S   +F KM  +NVVSWT M+ GY + G+ +EAV  F +M+K    EP++ TL 
Sbjct: 322 KCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYG-IEPDDFTLG 380

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
           +V+S+C+++++L  G   H+   T   +S    V NA++ +Y KCG +  + ++FN +++
Sbjct: 381 SVISSCANLASLEEGAQFHARALTSGLISFIT-VSNALVTLYGKCGSIEDSHRLFNEISF 439

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           KD+++W+ ++SG A  G   + + LF  M+ + + PD VTFI ++SACS  GLV++G  +
Sbjct: 440 KDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQI 499

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F++M   + IVP   HY C++D++ RAG +EEA  FI +MP   +   W  LL++CR + 
Sbjct: 500 FESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYG 559

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           N ++     + L+     +  ++ L+S+ +A   +WE+  ++R ++R  GL+K+ GCSWI
Sbjct: 560 NMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWI 619

Query: 455 E 455
           +
Sbjct: 620 K 620



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/448 (26%), Positives = 210/448 (46%), Gaps = 73/448 (16%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           NHY     LK C   H   KA  +H+H+I+     + F+ N+L+  Y  +  I  A ++F
Sbjct: 10  NHYC--ALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVF 67

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNA--NTLVSVLSACSSLVSH-- 124
           + +  P++ SW TI+S  SK G   E   +F  +  +     N+L+S  + C  +     
Sbjct: 68  DQMPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVK 127

Query: 125 --------------------------------KLGKAIHAHSLR---------------- 136
                                           KLG+ IH H ++                
Sbjct: 128 AYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDM 187

Query: 137 ---------------NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
                           L E N+++ N ++   +RCG +     LF +M +R+ +SWT+MI
Sbjct: 188 YSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMI 247

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
            G+ + G  ++A+ +F+EM K +  + ++ T  +VL+AC  + AL  GK VH+YI  R D
Sbjct: 248 TGFTQNGLDRDAIDIFREM-KLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYI-IRTD 305

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
              +  V +A+++MY KC ++  A  VF  +  K+ +SW+ ++ G   NG   +A++ FS
Sbjct: 306 YKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFS 365

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            M    + PDD T  ++IS+C++   +++G   F A +    ++  +     +V +YG+ 
Sbjct: 366 DMQKYGIEPDDFTLGSVISSCANLASLEEG-AQFHARALTSGLISFITVSNALVTLYGKC 424

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNA 389
           G +E++     E+  + E + W AL++ 
Sbjct: 425 GSIEDSHRLFNEISFKDEVT-WTALVSG 451


>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 646

 Score =  287 bits (734), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 163/482 (33%), Positives = 255/482 (52%), Gaps = 39/482 (8%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           T   A+KA + +    +A  IH    + G +   +   N+L+H Y +   +  A ++F+ 
Sbjct: 134 TIVFAVKAAATSSSPTEA--IHCVAFKRGFIGQSVLAGNALVHMYTSSMLLPDARKLFDE 191

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKL 126
           +   DVVSWTT+I G ++ G   EA  +FC +     V PN  TLV+  SA   +    L
Sbjct: 192 MADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGL 251

Query: 127 GKAIHAHSLRNLNENNIILDNAILDF-------------------------------YIR 155
           G+ +H   + +    ++ L+NA++D                                Y +
Sbjct: 252 GRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAK 311

Query: 156 CGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVN 215
           CG L +   LF ++P RNVVSW+ M+  Y+      EA+ +F +M      EP +ATLV+
Sbjct: 312 CGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAG-VEPIDATLVS 370

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           VLSAC+ + +L  G +++      + + ++  + NA I+M+ KCGDVG A ++F+ +  K
Sbjct: 371 VLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDK 430

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILF 335
           + +SW+T+I    ++G   +AL LF     N + PD+ T+I ++SACSHGGLV +G   F
Sbjct: 431 NVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHF 490

Query: 336 KAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN 395
           K M  VY I P+ +HYAC++D+ G+ GLL+EA    R MP+ A+ + WGALLNACR+H N
Sbjct: 491 KEMKIVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMHGN 550

Query: 396 DEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
            E+       L        G + LMS  +A   +W     +R  +R   +KK  GCS IE
Sbjct: 551 VEIGKCAADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGCSSIE 610

Query: 456 VN 457
           V+
Sbjct: 611 VD 612


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  287 bits (734), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 153/463 (33%), Positives = 260/463 (56%), Gaps = 7/463 (1%)

Query: 3   SCPSS-YNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDI 61
           S PSS  NHY +   L++C  A   +   ++HA + + G  +++ +   L++FY     +
Sbjct: 50  SFPSSPSNHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSL 109

Query: 62  FSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSAC 118
            +AH +F+ +   ++  W  +I   +  G H+ AI ++  +    +KP+  TL  VL AC
Sbjct: 110 RNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKAC 169

Query: 119 SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWT 178
           S+L +   G+ IH   +R+  E ++ +  A++D Y +CG +    ++F K+  R+ V W 
Sbjct: 170 SALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWN 229

Query: 179 TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST 238
           +M+  YA+ G   E++S+  EM   K   P EATLV V+S+ + I+ L  G+ +H +   
Sbjct: 230 SMLAAYAQNGHPDESLSLCCEM-AAKGVRPTEATLVTVISSSADIACLPHGREIHGF-GW 287

Query: 239 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQ 298
           R+    ++ V  A+I+MY KCG V +A  +F  L  K  +SW+ +I+G AM+G   +AL 
Sbjct: 288 RHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALD 347

Query: 299 LFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMY 358
           LF  M+  A  PD +TF+  ++ACS G L+D+G  L+  M     I P ++HY C+VD+ 
Sbjct: 348 LFERMMKEAQ-PDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLL 406

Query: 359 GRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFA 418
           G  G L+EA   IR+M +  +  VWGALLN+C+ H N E+ +   + L+  +    G + 
Sbjct: 407 GHCGQLDEAYDLIRQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPDDSGNYV 466

Query: 419 LMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           +++N +A + +WE   ++R  +   G+KK   CSWIEV   ++
Sbjct: 467 ILANMYAQSGKWEGVARLRQLMIDKGIKKNIACSWIEVKNKVY 509


>gi|147799187|emb|CAN74829.1| hypothetical protein VITISV_002140 [Vitis vinifera]
          Length = 542

 Score =  287 bits (734), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 158/458 (34%), Positives = 263/458 (57%), Gaps = 7/458 (1%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
            ++  T T  L AC        +  IH+ V  YG+  +I + N+L+  Y       S  +
Sbjct: 39  QFDQATLTTVLTACDKPEFCYVSKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRR 98

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVS 123
           +F+ +   +VV+WT +ISGLS+  F++E++ +F  +    V PN+ T +S L ACS L +
Sbjct: 99  VFDEMSEKNVVTWTAVISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQA 158

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            + G+ IH    +     ++ +++A++D Y +CGSL     +F    + + VS T ++ G
Sbjct: 159 IREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVG 218

Query: 184 YAERGFCKEAVSVFQEMEKTKEA-EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
            A+ GF +E++ VF +M K     +PN   +  +L      ++L+ GK +HS I  +   
Sbjct: 219 LAQNGFEEESIQVFVKMVKNGVVIDPN--MISAILGVFGIDTSLALGKQIHSLI-IKKSF 275

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
             +  V N +INMY KCGD+  +I++F  +  ++ +SW+++I+  A +G G +ALQL+  
Sbjct: 276 GSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEE 335

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
           M +  V+P DVTF++L+ AC+H GLV++G+   ++M+  Y I P+M+HYACVVDM GRAG
Sbjct: 336 MRLEGVWPTDVTFLSLLHACAHVGLVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRAG 395

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSN 422
           LL EA+ FI  +P +    VW ALL AC IH N EM       L  +   S   + L++N
Sbjct: 396 LLNEAKKFIERLPEKPGILVWQALLGACSIHGNSEMGKYAANQLFLQAPESPAPYILLAN 455

Query: 423 TFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            ++   +W++  +   +++ MG+ K+TG SWIE+   I
Sbjct: 456 IYSSEGKWKERARTIKKMKDMGVTKETGISWIEIEKQI 493



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 172/348 (49%), Gaps = 26/348 (7%)

Query: 75  DVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLVSHKLGKA 129
           D +SW + ISGL   G  +    +F      GI  + +  TL +VL+AC       + K 
Sbjct: 5   DTISWNSRISGLLGNGDIEMGFRVFKQLYESGI-YQFDQATLTTVLTACDKPEFCYVSKM 63

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           IH+       E  I + NA++  Y RCG  +S   +F +M ++NVV+WT +I G ++  F
Sbjct: 64  IHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQGQF 123

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI---STRYDLSVSN 246
            +E++ +F +M +    +PN  T ++ L ACS + A+  G+ +H  +      +DL +  
Sbjct: 124 YEESLKLFGKM-RDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHFDLCIE- 181

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
              +A+++MY KCG +  A ++F      D++S + ++ GLA NG   +++Q+F  M+ N
Sbjct: 182 ---SALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKN 238

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC---VVDMYGRAGL 363
            V  D     A++        +D  L L K + ++        +Y     +++MY + G 
Sbjct: 239 GVVIDPNMISAILGVFG----IDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGD 294

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQDLV 407
           L+++      MP     S W +++ A   H N     ++++ +R + V
Sbjct: 295 LDDSIKIFCWMPQRNSVS-WNSMIAAFARHGNGSRALQLYEEMRLEGV 341



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 143/297 (48%), Gaps = 9/297 (3%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M   P   N  T+  +L ACS     ++  +IH  V + G   D+ I+++L+  Y     
Sbjct: 134 MRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGS 193

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNANTLVSVL 115
           +  A +IF S    D VS T I+ GL++ GF +E+I +F      G+ + P  N + ++L
Sbjct: 194 LEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDP--NMISAIL 251

Query: 116 SACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVV 175
                  S  LGK IH+  ++    +N  ++N +++ Y +CG L     +F  MP+RN V
Sbjct: 252 GVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSV 311

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           SW +MI  +A  G    A+ +++EM + +   P + T +++L AC+ +  +  G      
Sbjct: 312 SWNSMIAAFARHGNGSRALQLYEEM-RLEGVWPTDVTFLSLLHACAHVGLVEKGMGFLES 370

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI-SWSTVISGLAMNG 291
           ++  Y +         V++M  + G +  A +    L  K  I  W  ++   +++G
Sbjct: 371 MAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLPEKPGILVWQALLGACSIHG 427



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 106/205 (51%), Gaps = 14/205 (6%)

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           MP ++ +SW + I G    G  +    VF+++ ++   + ++ATL  VL+AC        
Sbjct: 1   MPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACDKPEFCYV 60

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
            K +HS +   Y       VGNA+I  Y +CG      +VF+ ++ K+ ++W+ VISGL+
Sbjct: 61  SKMIHSLVFL-YGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLS 119

Query: 289 MNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQM 348
                 ++L+LF  M    V P+ +T+++ + ACS       GL   +    ++ +V ++
Sbjct: 120 QGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACS-------GLQAIREGRQIHGLVWKL 172

Query: 349 Q-HY-----ACVVDMYGRAGLLEEA 367
             H+     + ++DMY + G LE+A
Sbjct: 173 GVHFDLCIESALMDMYSKCGSLEDA 197


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  287 bits (734), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 149/435 (34%), Positives = 249/435 (57%), Gaps = 7/435 (1%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           ++HA +   G   ++ + N LL+ YV    +  A ++F+ +      SW+ I+ G +K G
Sbjct: 71  QVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVGGYAKVG 130

Query: 91  FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
                  MF  +       +  +   V+ AC  L   K G+ IH  +L+   +    +  
Sbjct: 131 NFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYGHFVCA 190

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
            ++D Y RC  +     +FVKM KR++ +WT MIG  AE G   E++  F  M + +   
Sbjct: 191 TLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRM-RNQGIV 249

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
           P++  LV V+ AC+ + A++  K +H+YI+ T Y L V  ++G A+I+MY KCG V  A 
Sbjct: 250 PDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDV--ILGTAMIDMYAKCGSVESAR 307

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
            +F+ +  ++ I+WS +I+    +G G +AL+LF +M+ + + P+ +TF++L+ ACSH G
Sbjct: 308 WIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAG 367

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 386
           L+++G   F +M   Y + P ++HY C+VD+ GRAG L+EA   I  MP+E +  +WGAL
Sbjct: 368 LIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGAL 427

Query: 387 LNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446
           L ACRIHR+ ++ +R+ + L+  +    G + L+SN +A A +WED  K RD + + GL+
Sbjct: 428 LGACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGKWEDMAKTRDLMTKGGLR 487

Query: 447 KKTGCSWIEVNPSIF 461
           K  G +WIEV   ++
Sbjct: 488 KIPGRTWIEVGEKLY 502



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 130/271 (47%), Gaps = 6/271 (2%)

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           + +HA    N    N+ + N +L  Y+  G+L     LF  M KR+  SW+ ++GGYA+ 
Sbjct: 70  RQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVGGYAKV 129

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G       +F+E+ ++  A  ++ +   V+ AC  +  L  G+ +H  I+ +  L   + 
Sbjct: 130 GNFFSCFWMFRELLRSG-APLDDYSAPVVIRACRDLKDLKCGRLIHC-ITLKCGLDYGHF 187

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V   +++MY +C  V  A Q+F  +  +D  +W+ +I  LA +G   ++L  F  M    
Sbjct: 188 VCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQG 247

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMS-TVYEIVPQMQHYACVVDMYGRAGLLEE 366
           + PD V  + ++ AC+  G +++   +   ++ T Y +   +     ++DMY + G +E 
Sbjct: 248 IVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILG--TAMIDMYAKCGSVES 305

Query: 367 AEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
           A      M +    + W A++ A   H   E
Sbjct: 306 ARWIFDRMQVRNVIT-WSAMIAAYGYHGQGE 335



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 93/209 (44%), Gaps = 11/209 (5%)

Query: 19  ACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVS 78
           AC+      KA  IHA++   G+  D+ +  +++  Y     + SA  IF+ +   +V++
Sbjct: 261 ACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVIT 320

Query: 79  WTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSL 135
           W+ +I+     G  ++A+++F  +    + PN  T VS+L ACS     + G+   +   
Sbjct: 321 WSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSM- 379

Query: 136 RNLNENNIILD----NAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIGGYAERGFC 190
              +E  +  D      ++D   R G L     +   MP +++ V W  ++G        
Sbjct: 380 --WDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIHRHL 437

Query: 191 KEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
             A  V + + K +  +P    L++ + A
Sbjct: 438 DLAERVARSLLKLQSQKPGHYVLLSNIYA 466


>gi|326511827|dbj|BAJ92058.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 581

 Score =  287 bits (734), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 163/459 (35%), Positives = 257/459 (55%), Gaps = 16/459 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           ++Y+ + AL   +         ++HA  ++ G   D F+ N+L++ Y +     +A  + 
Sbjct: 92  DNYSLSAALSTAARMPSVVVGAQLHALSVKLGLSSDTFVLNTLINMYSSCSYPSTARSVL 151

Query: 69  NSVV--FPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVS 123
           +S      D VSW TII+G    G   +A+  F  +    V  +  TL++ L AC+    
Sbjct: 152 DSAPKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCM 211

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            K+GK  HA  + N  E N  + ++++  Y +CG +     +F  MP RN V WT+MI G
Sbjct: 212 MKVGKLCHALLVTNGFEINCYMGSSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISG 271

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           Y + G  KEA+ +F++M+     + ++AT+  V+S+C  + AL  G+YVH+Y    + L 
Sbjct: 272 YTQLGQSKEAIKLFRDMQ-IAGVKVDDATISTVVSSCGQMGALDLGRYVHAYCDI-HGLG 329

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
               V N++I+MY KCGD+  A  +F  +  +D  SW+ +I G A NG   +AL LF+ M
Sbjct: 330 KDISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNFSWTVIIMGFAANGLSGEALDLFAQM 389

Query: 304 II-NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
                V P+++TF+ ++++CSHGGLV+QG   F  MS++Y I P+++HY C+VD+ GRA 
Sbjct: 390 EEEGGVMPNEITFLGVLTSCSHGGLVEQGYRHFHRMSSIYGIAPRIEHYGCMVDLLGRAK 449

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACR----IHRNDEMFDRIRQDLVNKKGVSVGTFA 418
           LL EAE FI+EMPI  +  +W +LL ACR    +   + + +RI+    NK G  V    
Sbjct: 450 LLAEAEQFIKEMPIAPDAVMWRSLLFACRTCGEVGLAEYVAERIQVLEPNKCGGDV---- 505

Query: 419 LMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           L+S  +A   RW D NK+R  I      K+ GCS+IEV+
Sbjct: 506 LLSTVYATTSRWVDANKVRTGIYSGRKTKQPGCSFIEVD 544


>gi|255578965|ref|XP_002530335.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
 gi|223530139|gb|EEF32051.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
          Length = 1530

 Score =  287 bits (734), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 145/418 (34%), Positives = 257/418 (61%), Gaps = 7/418 (1%)

Query: 43   HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI 102
            +++ + N LL+ YV  K +  A+ +F+ +   + VSW+ +I G  K G   +    F  +
Sbjct: 1113 NNLTVANKLLYVYVHHKCLTDAYALFDEMPQKNPVSWSIMIGGFVKVGEFMQCYKTFKEL 1172

Query: 103  ---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR-NLNENNIILDNAILDFYIRCGS 158
                V+P+  TL  V+ AC   V+  +G+ IH   L+  L+ ++ +   A++D Y +C  
Sbjct: 1173 IRNGVQPDNYTLPFVIKACRDTVALDMGRLIHCVVLKYGLHLDHFVC-AALVDMYAKCKV 1231

Query: 159  LASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLS 218
            +     LF  MP +++V+WT MIGGYAE G  KE++ +F  + + +   P++  +V++++
Sbjct: 1232 IEDAKLLFDVMPSKDLVTWTVMIGGYAECGNAKESLVLFDHL-REEGFVPDKIAMVSIVN 1290

Query: 219  ACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI 278
            AC+ + A++  ++VH Y++ R   S+  ++G A+I+MY KCGDV  A ++F+ + +K+ I
Sbjct: 1291 ACAKLGAMNKARFVHEYVN-RNRFSLDVILGTAMIDMYAKCGDVDSAREIFDNMHHKNVI 1349

Query: 279  SWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM 338
            SWS +I+    +G G++AL+LF +M+ + + P+++TF++L+ ACSH GLV+ GL L   M
Sbjct: 1350 SWSAMIAAYGYHGQGKKALELFPMMLSSGILPNNITFVSLLYACSHAGLVEDGLTLLSLM 1409

Query: 339  STVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEM 398
               + + P ++H+ C+VD+ GRAG L EA  FI  M +E +  +W +LL ACRIH+  ++
Sbjct: 1410 WESFGVRPDIKHHTCMVDLLGRAGQLTEAFRFIENMTVEKDEGLWSSLLGACRIHKRIDL 1469

Query: 399  FDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
             ++  + L+  +  + G + L+SN +A A +W+D  KIRD + +  LKK  G +WIE+
Sbjct: 1470 AEKAAKSLLELQPQNPGNYILLSNIYANAGQWKDVAKIRDLMTKRKLKKIPGYTWIEL 1527



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 13/204 (6%)

Query: 207  EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
            +PN   L++ L  C +I  +   K +H+ I+T   L  +  V N ++ +YV    +  A 
Sbjct: 1081 DPN--CLISTLLNCKNICQI---KQLHALITTNSVLYNNLTVANKLLYVYVHHKCLTDAY 1135

Query: 267  QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
             +F+ +  K+ +SWS +I G    G   Q  + F  +I N V PD+ T   +I AC    
Sbjct: 1136 ALFDEMPQKNPVSWSIMIGGFVKVGEFMQCYKTFKELIRNGVQPDNYTLPFVIKACRDTV 1195

Query: 327  LVDQGLILFKAMSTVYEIVPQMQHYAC--VVDMYGRAGLLEEAEAFIREMPIE--AEWSV 382
             +D G ++      V +    + H+ C  +VDMY +  ++E+A+     MP +    W+V
Sbjct: 1196 ALDMGRLIH---CVVLKYGLHLDHFVCAALVDMYAKCKVIEDAKLLFDVMPSKDLVTWTV 1252

Query: 383  W-GALLNACRIHRNDEMFDRIRQD 405
              G          +  +FD +R++
Sbjct: 1253 MIGGYAECGNAKESLVLFDHLREE 1276



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 3/104 (2%)

Query: 19   ACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVS 78
            AC+      KA  +H +V       D+ +  +++  Y    D+ SA +IF+++   +V+S
Sbjct: 1291 ACAKLGAMNKARFVHEYVNRNRFSLDVILGTAMIDMYAKCGDVDSAREIFDNMHHKNVIS 1350

Query: 79   WTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 119
            W+ +I+     G  K+A+++F  +    + PN  T VS+L ACS
Sbjct: 1351 WSAMIAAYGYHGQGKKALELFPMMLSSGILPNNITFVSLLYACS 1394


>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 601

 Score =  287 bits (734), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 163/456 (35%), Positives = 257/456 (56%), Gaps = 12/456 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD--IFSAHQ 66
           +++TF   LK C+          +HA + ++G + D+F+ NSL+  Y       I +A +
Sbjct: 117 DNFTFPFLLKVCTGNVWLPVIESVHAQIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKK 176

Query: 67  IFNSV-VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHK 125
           +F S+    DVVSW ++ISGL+K G ++EA  +F   D  P  +  +S  +     V  K
Sbjct: 177 LFVSMGARRDVVSWNSMISGLAKGGLYEEARKVF---DEMPEKDG-ISWNTMLDGYV--K 230

Query: 126 LGKAIHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           +GK   A  L   + E N++  + ++  Y + G +     LF KMP +N+VSWT ++ G+
Sbjct: 231 VGKMDDAFKLFDEMPERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGF 290

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           AE+G  +EA+S+F +MEK      N  T++++L+AC+    L  G+ +H+ I    +   
Sbjct: 291 AEKGLAREAISLFDQMEKACLKLDN-GTVMSILAACAESGLLGLGEKIHASIKNN-NFKC 348

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           +  + NA+++MY KCG + IA  VFN +  KD +SW+ ++ GLAM+G G +AL+LF  M 
Sbjct: 349 TTEISNALVDMYAKCGRLNIAYDVFNDIKNKDVVSWNAMLQGLAMHGHGVKALELFKRMK 408

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
                P+ VT I ++ AC+H GL+D G+  F  M   Y +VP+++HY C+VD+ GR G L
Sbjct: 409 EEGFSPNKVTMIGVLCACTHAGLIDDGIRYFSTMERDYTLVPEVEHYGCMVDLLGRKGRL 468

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           EEA   IR MP+     +WG LL ACR+H   E+   +   LV  +    G F+++SN +
Sbjct: 469 EEAIRLIRNMPMAPNAIIWGTLLGACRMHNAVELAREVLDHLVELEPTDSGNFSMLSNIY 528

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           A A  W      R  +R +G KK +G S IEVN  +
Sbjct: 529 AAAGDWNCVANTRLRMRSIGTKKPSGASSIEVNNEV 564



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 101/421 (23%), Positives = 199/421 (47%), Gaps = 29/421 (6%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQ-----KALEIHAHVIEYGHLHDIFIQNSLLHFY 55
           M S P     +  T+ L    L+  H+     +  ++HA +++     D+F+   L+  +
Sbjct: 3   MCSVPIRTPSWFSTRKLLEQKLSDLHKCTNLNQVKQLHAQILKSNLHVDLFVVPKLISAF 62

Query: 56  VTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLV 112
              + +  A   FN V +P+V  + T+I   S      +A   F  +       +  T  
Sbjct: 63  SLCRQMLLATNAFNQVQYPNVHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFP 122

Query: 113 SVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGS--LASCGYLFVKM- 169
            +L  C+  V   + +++HA   +    +++ + N+++D Y +CGS  +++   LFV M 
Sbjct: 123 FLLKVCTGNVWLPVIESVHAQIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMG 182

Query: 170 PKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 229
            +R+VVSW +MI G A+ G  +EA  VF EM      E +  +   +L     +  +   
Sbjct: 183 ARRDVVSWNSMISGLAKGGLYEEARKVFDEM-----PEKDGISWNTMLDGYVKVGKMDDA 237

Query: 230 KYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAM 289
             +   +  R  +S S +V       Y K GD+ +A  +F+ +  K+ +SW+ ++SG A 
Sbjct: 238 FKLFDEMPERNVVSWSTMVLG-----YCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAE 292

Query: 290 NGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM-STVYEIVPQM 348
            G  R+A+ LF  M    +  D+ T +++++AC+  GL+  G  +  ++ +  ++   ++
Sbjct: 293 KGLAREAISLFDQMEKACLKLDNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEI 352

Query: 349 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQ 404
            +   +VDMY + G L  A     ++  +   S W A+L    +H +     E+F R+++
Sbjct: 353 SN--ALVDMYAKCGRLNIAYDVFNDIKNKDVVS-WNAMLQGLAMHGHGVKALELFKRMKE 409

Query: 405 D 405
           +
Sbjct: 410 E 410


>gi|358345892|ref|XP_003637008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502943|gb|AES84146.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 162/444 (36%), Positives = 262/444 (59%), Gaps = 32/444 (7%)

Query: 30  LEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV----VFPDVVSWTTIISG 85
           +E  + V E     D+   N+++  Y        A  +F  +    +  DVV+W+++ISG
Sbjct: 90  MEDASKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIELDVVTWSSVISG 149

Query: 86  LSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR------ 136
            ++ GF  EA+D+F   CG   +PN  TL+S+LSAC+S+ +   GK  H +S++      
Sbjct: 150 YAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVKFILKGE 209

Query: 137 -NLNENNIILDNAILDFYIRCGSLASCGYLFVKM-PK-RNVVSWTTMIGGYAERGFCKEA 193
            N + +++ + NA++D Y +C SL     +F ++ PK R+VV+WT MIGGYA+ G    A
Sbjct: 210 HNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHA 269

Query: 194 VSVFQEMEKTKEA-EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL-VGNA 251
           + +F EM K      PN+ T+  VL AC+ ++AL FGK +H+Y+  R  +    L V N 
Sbjct: 270 LQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANC 329

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD 311
           +I+MY K GDV  A  VF+ ++ ++ +SW+++++G  M+G               A+  D
Sbjct: 330 LIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYGMHGA--------------ALVLD 375

Query: 312 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFI 371
            +TF+ ++ ACSH G+VD+G+ LF  MS  + + P ++HYAC+ D++GRAG L EA   I
Sbjct: 376 GITFLVVLYACSHSGMVDRGIDLFYRMSKDFVVDPGVEHYACMADLFGRAGRLCEATRLI 435

Query: 372 REMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWE 431
            +M +E    VW ALL+ACR H N+E+ +   + L+  K  + GT+ L+SN +A A RW+
Sbjct: 436 NDMSMEPTPVVWIALLSACRTHSNEELAEFAAKKLLELKADNDGTYTLLSNIYANARRWK 495

Query: 432 DTNKIRDEIRRMGLKKKTGCSWIE 455
           D  +IR  ++R G+KK+ G SW++
Sbjct: 496 DVARIRYLMKRTGIKKRPGWSWVK 519



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 119/438 (27%), Positives = 191/438 (43%), Gaps = 100/438 (22%)

Query: 77  VSWTTIISGLSKCGFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHA 132
           VSW +I+S  S C    +A+    +M  G  + P+   +V++L      VS  LG     
Sbjct: 24  VSWNSIVSVYSHCFVPNDAVFLFREMTVGYGILPDTVGVVNILP-----VSGFLG----- 73

Query: 133 HSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM------------ 180
                       + NA++D Y +CG +     +F +M  ++VV+W  M            
Sbjct: 74  ----------FFVGNALVDMYAKCGKMEDASKVFERMRFKDVVTWNAMVTGYSQNGRFED 123

Query: 181 -----------------------IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVL 217
                                  I GYA+RGF  EA+ VF++M   +   PN  TL+++L
Sbjct: 124 ALSLFGKMREEKIELDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCR-CRPNVVTLMSLL 182

Query: 218 SACSSISALSFGKYVHSY-----ISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNM 271
           SAC+S+ AL  GK  H Y     +   ++    +L V NA+I+MY KC  + +A  +F+ 
Sbjct: 183 SACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDE 242

Query: 272 LAYKDK--ISWSTVISGLAMNGCGRQALQLFSLM--IINAVFPDDVTFIALISACSHGGL 327
           +  KD+  ++W+ +I G A +G    ALQLFS M  I N + P+D T   ++ AC+    
Sbjct: 243 ICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAA 302

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYA-CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 386
           +  G  +   +     I   +   A C++DMY ++G ++ A+     M      S W +L
Sbjct: 303 LKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVS-WTSL 361

Query: 387 LNACRIH-------------------------RNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           L    +H                         R  ++F R+ +D V   GV    +A M+
Sbjct: 362 LTGYGMHGAALVLDGITFLVVLYACSHSGMVDRGIDLFYRMSKDFVVDPGVE--HYACMA 419

Query: 422 NTFAGADRW-EDTNKIRD 438
           + F  A R  E T  I D
Sbjct: 420 DLFGRAGRLCEATRLIND 437



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 13/113 (11%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHD--IFIQNSLLHFYVTVKDIFSAHQ 66
           N +T +  L AC+     +   +IHA+V+    +    +F+ N L+  Y    D+ +A  
Sbjct: 286 NDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQV 345

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACS 119
           +F+S+   + VSWT++++G    G H  A+ +        +  T + VL ACS
Sbjct: 346 VFDSMSKRNAVSWTSLLTGY---GMHGAALVL--------DGITFLVVLYACS 387


>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 794

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 163/482 (33%), Positives = 255/482 (52%), Gaps = 39/482 (8%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           T   A+KA + +    +A  IH    + G +   +   N+L+H Y +   +  A ++F+ 
Sbjct: 134 TIVFAVKAAATSSSPTEA--IHCVAFKRGFIGQSVLAGNALVHMYTSSMLLPDARKLFDE 191

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKL 126
           +   DVVSWTT+I G ++ G   EA  +FC +     V PN  TLV+  SA   +    L
Sbjct: 192 MADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGL 251

Query: 127 GKAIHAHSLRNLNENNIILDNAILDF-------------------------------YIR 155
           G+ +H   + +    ++ L+NA++D                                Y +
Sbjct: 252 GRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAK 311

Query: 156 CGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVN 215
           CG L +   LF ++P RNVVSW+ M+  Y+      EA+ +F +M      EP +ATLV+
Sbjct: 312 CGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAG-VEPIDATLVS 370

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           VLSAC+ + +L  G +++      + + ++  + NA I+M+ KCGDVG A ++F+ +  K
Sbjct: 371 VLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDK 430

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILF 335
           + +SW+T+I    ++G   +AL LF     N + PD+ T+I ++SACSHGGLV +G   F
Sbjct: 431 NVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHF 490

Query: 336 KAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN 395
           K M  VY I P+ +HYAC++D+ G+ GLL+EA    R MP+ A+ + WGALLNACR+H N
Sbjct: 491 KEMKIVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMHGN 550

Query: 396 DEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
            E+       L        G + LMS  +A   +W     +R  +R   +KK  GCS IE
Sbjct: 551 VEIGKCAADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGCSSIE 610

Query: 456 VN 457
           V+
Sbjct: 611 VD 612


>gi|225450928|ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340
           [Vitis vinifera]
          Length = 656

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 158/457 (34%), Positives = 263/457 (57%), Gaps = 7/457 (1%)

Query: 8   YNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           ++  T T  L AC        +  IH+ V  YG+  +I + N+L+  Y       S  ++
Sbjct: 154 FDQATLTTVLTACDKPEFCYVSKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRV 213

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSH 124
           F+ +   +VV+WT +ISGLS+  F++E++ +F  +    V PN+ T +S L ACS L + 
Sbjct: 214 FDEMSEKNVVTWTAVISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAI 273

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           + G+ IH    +     ++ +++A++D Y +CGSL     +F    + + VS T ++ G 
Sbjct: 274 REGRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGL 333

Query: 185 AERGFCKEAVSVFQEMEKTKEA-EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           A+ GF +E++ VF +M K     +PN   +  +L      ++L+ GK +HS I  +    
Sbjct: 334 AQNGFEEESIQVFVKMVKNGVVIDPN--MISAILGVFGIDTSLALGKQIHSLI-IKKSFG 390

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
            +  V N +INMY KCGD+  +I++F  +  ++ +SW+++I+  A +G G +ALQL+  M
Sbjct: 391 SNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEM 450

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
            +  V+P DVTF++L+ AC+H GLV++G+   ++M+  Y I P+M+HYACVVDM GRAGL
Sbjct: 451 RLEGVWPTDVTFLSLLHACAHVGLVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRAGL 510

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           L EA+ FI  +P +    VW ALL AC IH N EM       L  +   S   + L++N 
Sbjct: 511 LNEAKKFIERLPEKPGILVWQALLGACSIHGNSEMGKYAANQLFLQAPESPAPYILLANI 570

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           ++   +W++  +   +++ MG+ K+TG SWIE+   I
Sbjct: 571 YSSEGKWKERARTIKKMKDMGVTKETGISWIEIEKQI 607



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 187/378 (49%), Gaps = 26/378 (6%)

Query: 45  IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF----- 99
           I + NSLL  Y    ++  A ++F+ +   D +SW + ISGL   G  +    +F     
Sbjct: 89  IVVWNSLLSMYSRCGELRDATKVFDHMPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYE 148

Query: 100 CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSL 159
            GI  + +  TL +VL+AC       + K IH+       E  I + NA++  Y RCG  
Sbjct: 149 SGI-YQFDQATLTTVLTACDKPEFCYVSKMIHSLVFLYGYEREITVGNALITSYFRCGCC 207

Query: 160 ASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
           +S   +F +M ++NVV+WT +I G ++  F +E++ +F +M +    +PN  T ++ L A
Sbjct: 208 SSGRRVFDEMSEKNVVTWTAVISGLSQGQFYEESLKLFGKM-RDGPVDPNSLTYLSSLMA 266

Query: 220 CSSISALSFGKYVHSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD 276
           CS + A+  G+ +H  +      +DL +     +A+++MY KCG +  A ++F      D
Sbjct: 267 CSGLQAIREGRQIHGLVWKLGVHFDLCIE----SALMDMYSKCGSLEDAWKIFESAEEVD 322

Query: 277 KISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFK 336
           ++S + ++ GLA NG   +++Q+F  M+ N V  D     A++        +D  L L K
Sbjct: 323 EVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMISAILGVFG----IDTSLALGK 378

Query: 337 AMSTVYEIVPQMQHYAC---VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
            + ++        +Y     +++MY + G L+++      MP     S W +++ A   H
Sbjct: 379 QIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSVS-WNSMIAAFARH 437

Query: 394 RND----EMFDRIRQDLV 407
            N     ++++ +R + V
Sbjct: 438 GNGSRALQLYEEMRLEGV 455



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 137/270 (50%), Gaps = 24/270 (8%)

Query: 114 VLSACSSLVSHKLGKAIHAHSLRN---LNENN-------IILDNAILDFYIRCGSLASCG 163
           +LS C       LG ++HA  ++N   L+ NN       I++ N++L  Y RCG L    
Sbjct: 50  LLSLCGREGYLHLGSSLHASIIKNFGFLDGNNRDNLRNVIVVWNSLLSMYSRCGELRDAT 109

Query: 164 YLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI 223
            +F  MP ++ +SW + I G    G  +    VF+++ ++   + ++ATL  VL+AC   
Sbjct: 110 KVFDHMPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACDKP 169

Query: 224 SALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTV 283
                 K +HS +   Y       VGNA+I  Y +CG      +VF+ ++ K+ ++W+ V
Sbjct: 170 EFCYVSKMIHSLVFL-YGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAV 228

Query: 284 ISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 343
           ISGL+      ++L+LF  M    V P+ +T+++ + ACS       GL   +    ++ 
Sbjct: 229 ISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACS-------GLQAIREGRQIHG 281

Query: 344 IVPQMQ-HY-----ACVVDMYGRAGLLEEA 367
           +V ++  H+     + ++DMY + G LE+A
Sbjct: 282 LVWKLGVHFDLCIESALMDMYSKCGSLEDA 311



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 143/297 (48%), Gaps = 9/297 (3%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M   P   N  T+  +L ACS     ++  +IH  V + G   D+ I+++L+  Y     
Sbjct: 248 MRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGS 307

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNANTLVSVL 115
           +  A +IF S    D VS T I+ GL++ GF +E+I +F      G+ + P  N + ++L
Sbjct: 308 LEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDP--NMISAIL 365

Query: 116 SACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVV 175
                  S  LGK IH+  ++    +N  ++N +++ Y +CG L     +F  MP+RN V
Sbjct: 366 GVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSV 425

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           SW +MI  +A  G    A+ +++EM + +   P + T +++L AC+ +  +  G      
Sbjct: 426 SWNSMIAAFARHGNGSRALQLYEEM-RLEGVWPTDVTFLSLLHACAHVGLVEKGMGFLES 484

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI-SWSTVISGLAMNG 291
           ++  Y +         V++M  + G +  A +    L  K  I  W  ++   +++G
Sbjct: 485 MAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLPEKPGILVWQALLGACSIHG 541


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 153/456 (33%), Positives = 259/456 (56%), Gaps = 7/456 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +T+   L+ C+         +IH  VI+ G   ++++ + L+  Y     + +AH I 
Sbjct: 414 NQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVIL 473

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
            ++   DVVSWT +ISG ++     EA+  F  +    ++ +     S +SAC+ + +  
Sbjct: 474 RTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALN 533

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ IHA S  +    ++ + NA++  Y RCG +      F K+  ++ +SW  +I G+A
Sbjct: 534 QGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFA 593

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR-YDLSV 244
           + G+C++A+ VF +M + K  E +  T  + +SA ++I+ +  GK +H+ I  R +D  +
Sbjct: 594 QSGYCEDALKVFAQMNRAK-LEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDI 652

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
              V NA+I  Y KCG +  A + F  +  K+ +SW+ +I+G + +G G +A+ LF  M 
Sbjct: 653 E--VSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMK 710

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
                P+ VTF+ ++SACSH GLV +GL  F++MS  + +VP+  HYACVVD+  RAG L
Sbjct: 711 QVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFL 770

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
             A  FI EMPIE + ++W  LL+AC +H+N E+ +   Q L+  +     T+ L+SN +
Sbjct: 771 SRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMY 830

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           A + +W+  ++ R  +R  G+KK+ G SWIEV  S+
Sbjct: 831 AVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSV 866



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/384 (27%), Positives = 205/384 (53%), Gaps = 11/384 (2%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           Y F+  L  C+         ++HA V +YG   + ++ N+L+  Y  + +  SA ++F+ 
Sbjct: 214 YVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSK 273

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLG 127
           +   D VS+ ++ISGL++ GF   A+++F  +    +KP+  T+ S+LSAC+S  +   G
Sbjct: 274 MQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKG 333

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           + +H++ ++    +++I++ A+LD Y+ C  + +   +F+     NVV W  M+  + + 
Sbjct: 334 EQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKL 393

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSN 246
               E+  +F++M+  K   PN+ T  ++L  C+S+ AL  G+ +H+  I T +  +V  
Sbjct: 394 DNLSESFRIFRQMQ-IKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNV-- 450

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            V + +I+MY K G +  A  +   L   D +SW+ +ISG A +    +AL+ F  M+  
Sbjct: 451 YVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNR 510

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
            +  D++ F + ISAC+    ++QG  +  A S V      +     +V +Y R G ++ 
Sbjct: 511 GIQSDNIGFSSAISACAGIQALNQGRQI-HAQSYVSGYSEDLSIGNALVSLYARCGRIK- 568

Query: 367 AEAFIREMPIEAEWSV-WGALLNA 389
            EA++    I+A+ S+ W  L++ 
Sbjct: 569 -EAYLEFEKIDAKDSISWNGLISG 591



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 206/408 (50%), Gaps = 27/408 (6%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L AC+      K  ++H++VI+ G   D+ ++ +LL  YV   DI +AH++F + 
Sbjct: 316 TVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTA 375

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGK 128
              +VV W  ++    K     E+  +F  + +K   PN  T  S+L  C+S+ +  LG+
Sbjct: 376 QTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGE 435

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IH   ++   + N+ + + ++D Y + G L +   +   + + +VVSWT +I GYA+  
Sbjct: 436 QIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHN 495

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH--SYIST-RYDLSVS 245
              EA+  F+EM   +  + +     + +SAC+ I AL+ G+ +H  SY+S    DLS  
Sbjct: 496 LFAEALKHFKEM-LNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLS-- 552

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             +GNA++++Y +CG +  A   F  +  KD ISW+ +ISG A +G    AL++F+ M  
Sbjct: 553 --IGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNR 610

Query: 306 NAVFPDDVTFIALISACSHGGLVDQG-----LILFKAMSTVYEIVPQMQHYACVVDMYGR 360
             +     TF + +SA ++   + QG     +I+ +   +  E+   +      +  Y +
Sbjct: 611 AKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNAL------ITFYAK 664

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIH----RNDEMFDRIRQ 404
            G +E+A     EMP + + S W A++     H        +F++++Q
Sbjct: 665 CGSIEDARREFCEMPEKNDVS-WNAMITGYSQHGYGNEAVNLFEKMKQ 711



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 163/308 (52%), Gaps = 12/308 (3%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           ++H  +++ G  ++  + N L+  Y  + D+    ++F  +    V SW  IISG  +  
Sbjct: 31  KLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGFMEKK 90

Query: 91  FHKEAIDMF-CGID--VKPNANTLVSVLSACSSLVSHKLG----KAIHAHSLRNLNENNI 143
                +D+F C I+  V P   +  SVL ACS    H++G    + IHA  + +    + 
Sbjct: 91  MSNRVLDLFSCMIEENVSPTEISFASVLRACSG---HRIGIRYAEQIHARIICHGLLCSP 147

Query: 144 ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
           I+ N ++  Y + G + S   +F  +  ++ VSW  MI G+++ G+ +EA+ +F EM  T
Sbjct: 148 IISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMH-T 206

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
               P      +VLS C+ I     G+ +H+ +  +Y  S+   V NA++ +Y +  +  
Sbjct: 207 AGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALV-FKYGSSLETYVCNALVTLYSRMPNFV 265

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
            A +VF+ +  KD++S++++ISGLA  G    AL+LF+ M  + + PD VT  +L+SAC+
Sbjct: 266 SAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACA 325

Query: 324 HGGLVDQG 331
             G + +G
Sbjct: 326 SNGALCKG 333


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 157/469 (33%), Positives = 259/469 (55%), Gaps = 9/469 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           +L C  +    TF   + +C   +     +++H  ++  G   D ++   L++ Y  +  
Sbjct: 65  LLCCEPNPTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGS 124

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSA 117
           +  A ++F+      +  W  I   L+     ++ + ++     I +  N  T   VL A
Sbjct: 125 VDHACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKA 184

Query: 118 CS----SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
           C     S+   + GK IHAH LR+  E ++ +   +LD Y R G ++    +F  MP +N
Sbjct: 185 CVVSELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKN 244

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQ-EMEKTKEAEPNEATLVNVLSACSSISALSFGKYV 232
           +VSW+ MI  YA+     +A+ +FQ  M +  +  PN  T+V+VL AC+S++AL  GK V
Sbjct: 245 IVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLV 304

Query: 233 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
           H+Y+  R  L  +  V N +I MY +CG++    +VF+ +  +D ISW+++IS   M+G 
Sbjct: 305 HAYV-LRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGL 363

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
           G++A+Q+F  MI   V P  +TFI ++ ACSH GLV++  ILF++M   Y I P+M+HYA
Sbjct: 364 GKKAIQIFENMINRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHPRMEHYA 423

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           C+VD+ GRA  L+EA   I+ M  +   +VWG+LL +CRIH N E+ +R    L   +  
Sbjct: 424 CMVDILGRANRLDEAIELIQNMDFKPGPTVWGSLLGSCRIHCNVELAERASAMLFELEPK 483

Query: 413 SVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           + G + L+S+ +A +  W D  ++R ++   GL+K   CSWIEV   I+
Sbjct: 484 NAGNYVLLSHIYAKSRMWNDVRRVRKQLESRGLQKIPSCSWIEVKRKIY 532


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 152/461 (32%), Positives = 261/461 (56%), Gaps = 6/461 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M  C      + F+ A++AC+     +   ++H   +++G   ++F+ ++L   Y     
Sbjct: 32  MRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGA 91

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           +F A ++F  +   D VSWT +I G SK G  +EA+  F  +   +V  + + L S L A
Sbjct: 92  MFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGA 151

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLF-VKMPKRNVVS 176
           C +L + K G+++H+  ++   E++I + NA+ D Y + G + S   +F +    RNVVS
Sbjct: 152 CGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVS 211

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           +T +I GY E    ++ +SVF E+ + +  EPNE T  +++ AC++ +AL  G  +H+ +
Sbjct: 212 YTCLIDGYVETEQIEKGLSVFVELRR-QGIEPNEFTFSSLIKACANQAALEQGTQLHAQV 270

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
             + +      V + +++MY KCG +  AIQ F+ +    +I+W++++S    +G G+ A
Sbjct: 271 -MKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDA 329

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
           +++F  M+   V P+ +TFI+L++ CSH GLV++GL  F +M   Y +VP  +HY+CV+D
Sbjct: 330 IKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVID 389

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGT 416
           + GRAG L+EA+ FI  MP E     W + L ACRIH + EM     + LV  +  + G 
Sbjct: 390 LLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGA 449

Query: 417 FALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
             L+SN +A   +WED   +R  +R   +KK  G SW++V 
Sbjct: 450 LVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVG 490



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/314 (31%), Positives = 172/314 (54%), Gaps = 11/314 (3%)

Query: 75  DVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHKLGKAIH 131
           ++VSWT +ISGLS+     EAI  FCG+ +    P      S + AC+SL S ++GK +H
Sbjct: 5   NLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMH 64

Query: 132 AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
             +L+    + + + + + D Y +CG++     +F +MP ++ VSWT MI GY++ G  +
Sbjct: 65  CLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFE 124

Query: 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNA 251
           EA+  F++M   +E   ++  L + L AC ++ A  FG+ VHS +  +        VGNA
Sbjct: 125 EALLAFKKM-IDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSV-VKLGFESDIFVGNA 182

Query: 252 VINMYVKCGDVGIAIQVFNMLAY-KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP 310
           + +MY K GD+  A  VF + +  ++ +S++ +I G        + L +F  +    + P
Sbjct: 183 LTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEP 242

Query: 311 DDVTFIALISACSHGGLVDQGLILF-KAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEA 369
           ++ TF +LI AC++   ++QG  L  + M   ++  P +   + +VDMYG+ GLLE+A  
Sbjct: 243 NEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVS--SILVDMYGKCGLLEQAIQ 300

Query: 370 FIREM--PIEAEWS 381
              E+  P E  W+
Sbjct: 301 AFDEIGDPTEIAWN 314



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 114/256 (44%), Gaps = 36/256 (14%)

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           MP+RN+VSWT MI G ++     EA+  F  M    E  P +    + + AC+S+ ++  
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEV-PTQFAFSSAIRACASLGSIEM 59

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
           GK +H  ++ ++ +     VG+ + +MY KCG +  A +VF  +  KD++SW+ +I G +
Sbjct: 60  GKQMHC-LALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYS 118

Query: 289 MNGCGRQALQLFSLMIINAVFPDDVTFIALISACS-----------HGGLVDQG----LI 333
             G   +AL  F  MI   V  D     + + AC            H  +V  G    + 
Sbjct: 119 KIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIF 178

Query: 334 LFKAMSTVYEIVPQMQ----------------HYACVVDMYGRAGLLEEAEAF---IREM 374
           +  A++ +Y     M+                 Y C++D Y     +E+  +    +R  
Sbjct: 179 VGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQ 238

Query: 375 PIEAEWSVWGALLNAC 390
            IE     + +L+ AC
Sbjct: 239 GIEPNEFTFSSLIKAC 254


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 152/448 (33%), Positives = 254/448 (56%), Gaps = 36/448 (8%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI- 102
           D+ +  +L+  YV    I  A Q+F+ +    +VSWTT++SG  + G++ E++++F  + 
Sbjct: 301 DVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMR 360

Query: 103 --DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLA 160
             +V P+   LV+VLSAC  L    LG+++HA  +      +  L NA+LD Y +CG L 
Sbjct: 361 FENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLD 420

Query: 161 SC--------------------GY-----------LFVKMPKRNVVSWTTMIGGYAERGF 189
                                 G+            F K+P++++VSW TM+  Y +   
Sbjct: 421 EALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDL 480

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
             E+  +F +M+ +   +P++ TL+++LS+C+ + AL+ G +V+ YI  + ++ +  ++G
Sbjct: 481 FNESFEIFCKMQSSN-VKPDKTTLISLLSSCAKVGALNHGIWVNVYIE-KNEIGIDAMLG 538

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
            A+I+MY KCG V +A ++F  +  K+   W+ +++  AM G   +A+ L+  M    V 
Sbjct: 539 TALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVK 598

Query: 310 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEA 369
           PD VTFIAL++ACSHGGLVD+G   F  + + Y I+P + HY C+VD+ GR G LEE   
Sbjct: 599 PDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVK 658

Query: 370 FIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADR 429
           FI  MPIE + S+W +L+ ACR H N E+ ++  + L+     + G   L+SN +A A R
Sbjct: 659 FIERMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGR 718

Query: 430 WEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           W+D +K+R ++   G+ K+ G + IE N
Sbjct: 719 WDDVSKVRTKLHETGVPKQPGFTMIEQN 746



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 123/445 (27%), Positives = 209/445 (46%), Gaps = 71/445 (15%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           TF   + AC      +   E+H  +++ G   +  + N+L+  Y     +    Q+F  +
Sbjct: 135 TFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKM 194

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              DV+SW T+IS     G ++EA+D+F  +    V P+  T+VS++S C+ L   ++GK
Sbjct: 195 THRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGK 254

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGS-------LASC---------------GY-- 164
            +H + + N       L N ++D Y +CG        L+ C               GY  
Sbjct: 255 RLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVK 314

Query: 165 ---------LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVN 215
                    LF KM +R++VSWTTM+ GY + G+  E++ +FQ+M + +   P+E  LV 
Sbjct: 315 SNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQM-RFENVIPDEVALVT 373

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV------- 268
           VLSAC  +     G+ VH++I T Y + V   +GNA++++Y KCG +  A++        
Sbjct: 374 VLSACVHLEDFDLGRSVHAFIVT-YGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCK 432

Query: 269 ------------------------FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
                                   FN +  KD +SW+T+++    +    ++ ++F  M 
Sbjct: 433 SAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQ 492

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
            + V PD  T I+L+S+C+  G ++ G I         EI         ++DMYG+ G +
Sbjct: 493 SSNVKPDKTTLISLLSSCAKVGALNHG-IWVNVYIEKNEIGIDAMLGTALIDMYGKCGCV 551

Query: 365 EEAEAFIREMPIEAEWSVWGALLNA 389
           E A     ++ IE    VW A++ A
Sbjct: 552 EMAYEIFTQI-IEKNVFVWTAMMAA 575



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 120/433 (27%), Positives = 207/433 (47%), Gaps = 48/433 (11%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           LK+CS          IHAH+I    +HD  I + +L F ++V ++  AHQI +    P+ 
Sbjct: 42  LKSCSNIREFSP---IHAHLITANLIHDPEITSQVLAFLLSVNNLDCAHQILSYSHEPES 98

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAH 133
           + W T++    K G  +E ++ +  +    V  + +T   ++ AC      KLG  +H  
Sbjct: 99  IIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGR 158

Query: 134 SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
            L+     N  L+N ++  Y +CG L     LF KM  R+V+SW TMI  Y  +G  +EA
Sbjct: 159 ILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREA 218

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVI 253
           + +F EM       P+E T+V+++S C+ +  L  GK +H YI     L +   + N ++
Sbjct: 219 LDLFDEM-LVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDN-KLWIRGSLLNCLV 276

Query: 254 NMYVKCG---------------------------------DVGIAIQVFNMLAYKDKISW 280
           +MY KCG                                  +  A Q+F+ +  +  +SW
Sbjct: 277 DMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSW 336

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340
           +T++SG    G   ++L+LF  M    V PD+V  + ++SAC H    D G  +   + T
Sbjct: 337 TTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVT 396

Query: 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CR---IHRND 396
              +V      A ++D+Y + G L+EA     ++P ++  S W ++L+  CR   + +  
Sbjct: 397 YGMLVDGFLGNA-LLDLYAKCGKLDEALRTFEQLPCKSAAS-WNSMLDGFCRSGGVDKAR 454

Query: 397 EMFDRI-RQDLVN 408
           + F++I  +D+V+
Sbjct: 455 DFFNKIPEKDIVS 467



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 148/305 (48%), Gaps = 23/305 (7%)

Query: 111 LVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD----NAILDFYIRCGSLASCGYLF 166
           ++ +L +CS++   +    IHAH    L   N+I D    + +L F +   +L     + 
Sbjct: 38  IIDLLKSCSNI---REFSPIHAH----LITANLIHDPEITSQVLAFLLSVNNLDCAHQIL 90

Query: 167 VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 226
               +   + W T++    + G  +E +  +  M  T+    + +T   ++ AC     +
Sbjct: 91  SYSHEPESIIWNTLLENKLKEGCPQEVLECYYHM-VTQGVLLDISTFHFLIHACCKNFDV 149

Query: 227 SFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
             G  VH  I  +     +  + N ++ +Y KCG +    Q+F  + ++D ISW+T+IS 
Sbjct: 150 KLGSEVHGRI-LKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISC 208

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG--LILFKAMSTVYEI 344
             + G  R+AL LF  M+++ V PD++T ++L+S C+    ++ G  L L+   + ++  
Sbjct: 209 YVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLW-- 266

Query: 345 VPQMQHYACVVDMYGRAGLLEEAEAFI-REMPIEAEWSVWGALLN----ACRIHRNDEMF 399
             +     C+VDMY + G ++EA   + R    E +  +W  L++    + +I +  ++F
Sbjct: 267 -IRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLF 325

Query: 400 DRIRQ 404
           D++ +
Sbjct: 326 DKMNE 330


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 157/451 (34%), Positives = 255/451 (56%), Gaps = 7/451 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N++TF   LKAC           +H  V++  +  D+++   LL  Y    D   A + F
Sbjct: 146 NNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAF 205

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   DV+ W+ +IS  ++ G  ++A+++FC +    V PN  T  SVL A + + S  
Sbjct: 206 GDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLD 265

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           L K IH H+L+     ++ + NA++  Y +CG +     LF  +  RN VSW T+I  Y 
Sbjct: 266 LSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYV 325

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS-TRYDLSV 244
           + G  + A+S+F  M +  + +  E T  ++L AC++++AL  G  VH   + T Y   V
Sbjct: 326 QLGDGERALSLFSNMLRY-QVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDV 384

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           +  VGNA+I+MY KCG +  A  +F+ML  +DK+SW+ +I G +M+G G +A+++F+LM 
Sbjct: 385 A--VGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMK 442

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
                PD++TF+ ++SACS+ G +D+G   F +M   Y I P M+HY C+V + GR+G L
Sbjct: 443 ETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNL 502

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           ++A  FI ++P E    +W ALL AC IH + E+     Q ++  +     +  L+SN +
Sbjct: 503 DQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNIY 562

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
           A A RW +   +R  ++R G+KK+ G SWIE
Sbjct: 563 ARARRWGNVAYVRKHMKRKGVKKEPGLSWIE 593



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/424 (27%), Positives = 210/424 (49%), Gaps = 14/424 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N + FT  LK        +    +H  V++ G+  + FI  +L+  Y     +  A ++F
Sbjct: 45  NPFVFTTVLKLLVSMEWAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVF 104

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHK 125
           + +   D+VSWT +I+  ++     EA++ F  + V   KPN  T   VL AC  L +  
Sbjct: 105 DEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFD 164

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK +H   L+   E ++ +   +L+ Y RCG        F  MPK +V+ W+ MI  +A
Sbjct: 165 AGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFA 224

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G  ++A+ +F +M +     PN+ T  +VL A + I +L   K +H + + +  LS  
Sbjct: 225 QSGQSEKALEIFCQMRRAF-VIPNQFTFSSVLQASADIESLDLSKTIHGH-ALKAGLSTD 282

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V NA++  Y KCG +  ++++F  L+ ++ +SW+T+I      G G +AL LFS M+ 
Sbjct: 283 VFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLR 342

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
             V   +VT+ +++ AC+    ++ GL +      T+Y     +     ++DMY + G +
Sbjct: 343 YQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYG--QDVAVGNALIDMYAKCGSI 400

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIH----RNDEMFDRIRQDLVNKKGVS-VGTFAL 419
           ++A  F+ +M    +   W A++    +H       +MF+ +++       ++ VG  + 
Sbjct: 401 KDAR-FMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSA 459

Query: 420 MSNT 423
            SNT
Sbjct: 460 CSNT 463



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 99/201 (49%), Gaps = 12/201 (5%)

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224
           +F +MP+RN VS+ T+I GYA+     EA  +F  +      E N      VL    S+ 
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGH-ELNPFVFTTVLKLLVSME 60

Query: 225 ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVI 284
               G+ VH  +  +     +  +G A+I+ Y   G V +A +VF+ ++ KD +SW+ +I
Sbjct: 61  WAELGRIVHGCV-LKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMI 119

Query: 285 SGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 344
           +  A N C  +AL+ FS M +    P++ TF  ++ AC        GL  F A  TV+  
Sbjct: 120 ASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKAC-------LGLQNFDAGKTVHCS 172

Query: 345 VPQMQHYACVVDMYGRAGLLE 365
           V +  +     D+Y   GLLE
Sbjct: 173 VLKTNYER---DLYVGVGLLE 190


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 152/461 (32%), Positives = 261/461 (56%), Gaps = 6/461 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M  C      + F+ A++AC+     +   ++H   +++G   ++F+ ++L   Y     
Sbjct: 97  MRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGA 156

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           +F A ++F  +   D VSWT +I G SK G  +EA+  F  +   +V  + + L S L A
Sbjct: 157 MFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGA 216

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLF-VKMPKRNVVS 176
           C +L + K G+++H+  ++   E++I + NA+ D Y + G + S   +F +    RNVVS
Sbjct: 217 CGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVS 276

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           +T +I GY E    ++ +SVF E+ + +  EPNE T  +++ AC++ +AL  G  +H+ +
Sbjct: 277 YTCLIDGYVETEQIEKGLSVFVELRR-QGIEPNEFTFSSLIKACANQAALEQGTQLHAQV 335

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
             + +      V + +++MY KCG +  AIQ F+ +    +I+W++++S    +G G+ A
Sbjct: 336 -MKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDA 394

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
           +++F  M+   V P+ +TFI+L++ CSH GLV++GL  F +M   Y +VP  +HY+CV+D
Sbjct: 395 IKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVID 454

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGT 416
           + GRAG L+EA+ FI  MP E     W + L ACRIH + EM     + LV  +  + G 
Sbjct: 455 LLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGA 514

Query: 417 FALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
             L+SN +A   +WED   +R  +R   +KK  G SW++V 
Sbjct: 515 LVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVG 555



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/362 (30%), Positives = 198/362 (54%), Gaps = 11/362 (3%)

Query: 27  QKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGL 86
           ++  ++HA +I  G+    F+ N L++ Y    ++  A ++F+++   ++VSWT +ISGL
Sbjct: 22  RRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGL 81

Query: 87  SKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNI 143
           S+     EAI  FCG+ +    P      S + AC+SL S ++GK +H  +L+    + +
Sbjct: 82  SQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSEL 141

Query: 144 ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
            + + + D Y +CG++     +F +MP ++ VSWT MI GY++ G  +EA+  F++M   
Sbjct: 142 FVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKM-ID 200

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
           +E   ++  L + L AC ++ A  FG+ VHS +  +        VGNA+ +MY K GD+ 
Sbjct: 201 EEVTIDQHVLCSTLGACGALKACKFGRSVHSSV-VKLGFESDIFVGNALTDMYSKAGDME 259

Query: 264 IAIQVFNMLAY-KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
            A  VF + +  ++ +S++ +I G        + L +F  +    + P++ TF +LI AC
Sbjct: 260 SASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKAC 319

Query: 323 SHGGLVDQGLILF-KAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM--PIEAE 379
           ++   ++QG  L  + M   ++  P +   + +VDMYG+ GLLE+A     E+  P E  
Sbjct: 320 ANQAALEQGTQLHAQVMKINFDEDPFVS--SILVDMYGKCGLLEQAIQAFDEIGDPTEIA 377

Query: 380 WS 381
           W+
Sbjct: 378 WN 379



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 92/178 (51%), Gaps = 5/178 (2%)

Query: 213 LVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 271
           L +V+   +    L  GK +H+  I   Y  +    + N ++NMY KCG++  A+++F+ 
Sbjct: 8   LAHVIQTYAKTKRLRRGKQLHALLICAGY--TPCTFLTNHLVNMYSKCGELDHALKLFDT 65

Query: 272 LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
           +  ++ +SW+ +ISGL+ N    +A++ F  M I    P    F + I AC+  G ++ G
Sbjct: 66  MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 125

Query: 332 LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
             +   ++  + I  ++   + + DMY + G + +A     EMP + E S W A+++ 
Sbjct: 126 KQM-HCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVS-WTAMIDG 181


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 158/496 (31%), Positives = 265/496 (53%), Gaps = 50/496 (10%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           ++ T    L  C+    H    ++H   +    + ++F+ N L+  Y     +  A+ +F
Sbjct: 228 DNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVF 287

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID------------------------- 103
           +++   DVVSW  +++G S+ G  ++A+ +F  +                          
Sbjct: 288 SNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGY 347

Query: 104 -------------VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR---NLNEN-----N 142
                        +KPN  TL+SVLS C+S+ +   GK IH ++++   +L +N     N
Sbjct: 348 EALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDEN 407

Query: 143 IILDNAILDFYIRCGSLASCGYLFVKM-PK-RNVVSWTTMIGGYAERGFCKEAVSVFQEM 200
           +++ N ++D Y +C  + +   +F  + PK R+VV+WT MIGGY++ G   +A+ +  EM
Sbjct: 408 MVI-NQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEM 466

Query: 201 -EKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKC 259
            E+  +  PN  T+   L AC+S++AL  GK +H+Y       +V   V N +I+MY KC
Sbjct: 467 FEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKC 526

Query: 260 GDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALI 319
           G +  A  VF+ +  K++++W+++++G  M+G G +AL +F  M       D VT + ++
Sbjct: 527 GSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVL 586

Query: 320 SACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAE 379
            ACSH G++DQG+  F  M TV+ + P  +HYAC+VD+ GRAG L  A   I EMP+E  
Sbjct: 587 YACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPP 646

Query: 380 WSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDE 439
             VW A L+ CRIH   E+ +   + +        G++ L+SN +A A RW+D  +IR  
Sbjct: 647 PVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSL 706

Query: 440 IRRMGLKKKTGCSWIE 455
           +R  G+KK+ GCSW+E
Sbjct: 707 MRHKGVKKRPGCSWVE 722



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 157/312 (50%), Gaps = 7/312 (2%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD--VVSWTTIISGLSKC 89
           IH  ++ +G L  + + + L+  Y++V  +  A  +       D  V  W ++I      
Sbjct: 47  IHQKLLSFGIL-TLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDN 105

Query: 90  GFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
           G   + + +F     +   P+  T   V  AC  + S + G++ HA SL     +N+ + 
Sbjct: 106 GCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVG 165

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           NA++  Y RC SL+    +F +M   +VVSW ++I  YA+ G  K A+ +F  M      
Sbjct: 166 NALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGC 225

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
            P+  TLVNVL  C+S+   S GK +H +  T  ++  +  VGN +++MY KCG +  A 
Sbjct: 226 RPDNITLVNVLPPCASLGTHSLGKQLHCFAVTS-EMIQNMFVGNCLVDMYAKCGMMDEAN 284

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
            VF+ ++ KD +SW+ +++G +  G    A++LF  M    +  D VT+ A IS  +  G
Sbjct: 285 TVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRG 344

Query: 327 LVDQGLILFKAM 338
           L  + L + + M
Sbjct: 345 LGYEALGVCRQM 356



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 151/307 (49%), Gaps = 17/307 (5%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEY-------GHLHDIFIQNSLLH 53
           MLS     N  T    L  C+         EIH + I+Y       GH  +  + N L+ 
Sbjct: 356 MLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLID 415

Query: 54  FYVTVKDIFSAHQIFNSVVFP--DVVSWTTIISGLSKCGFHKEAIDMFCGI-----DVKP 106
            Y   K + +A  +F+S+     DVV+WT +I G S+ G   +A+++   +       +P
Sbjct: 416 MYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRP 475

Query: 107 NANTLVSVLSACSSLVSHKLGKAIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYL 165
           NA T+   L AC+SL + ++GK IHA++LRN  N   + + N ++D Y +CGS++    +
Sbjct: 476 NAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLV 535

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
           F  M  +N V+WT+++ GY   G+ +EA+ +F EM +    + +  TL+ VL ACS    
Sbjct: 536 FDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIG-FKLDGVTLLVVLYACSHSGM 594

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF-NMLAYKDKISWSTVI 284
           +  G    + + T + +S        ++++  + G +  A+++   M      + W   +
Sbjct: 595 IDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFL 654

Query: 285 SGLAMNG 291
           S   ++G
Sbjct: 655 SCCRIHG 661


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 145/420 (34%), Positives = 248/420 (59%), Gaps = 6/420 (1%)

Query: 45  IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV 104
           + I  +LL  Y   K +  A ++F+ +   + V+W+ +I G   C    EA ++F  + V
Sbjct: 239 VLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLV 298

Query: 105 KP----NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLA 160
           +     +A ++ S L  C+SL   ++G  +HA   ++    ++   N++L  Y + G + 
Sbjct: 299 EGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLIN 358

Query: 161 SCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
               LF ++  ++ +S+  ++ GY + G  +EA  VF++M+     +P+ AT+V+++ AC
Sbjct: 359 EATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQAC-NVQPDIATMVSLIPAC 417

Query: 221 SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
           S ++AL  G+  H  +  R  L++   + N++I+MY KCG + ++ QVF+ +  +D +SW
Sbjct: 418 SHLAALQHGRCSHGSVIIR-GLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSW 476

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340
           +T+I+G  ++G G++A  LF  M      PDDVTFI LI+ACSH GLV +G   F  M+ 
Sbjct: 477 NTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTH 536

Query: 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFD 400
            Y I+P+M+HY C+VD+  R G L+EA  FI+ MP++A+  VWGALL ACRIH+N ++  
Sbjct: 537 KYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGK 596

Query: 401 RIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           ++ + +        G F L+SN F+ A R+++  ++R   +  G KK  GCSWIE+N S+
Sbjct: 597 QVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSL 656



 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 113/397 (28%), Positives = 192/397 (48%), Gaps = 20/397 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YTF   LKACS          IHAH    G   D+F+  +L+  Y+       A  +F
Sbjct: 98  NKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVF 157

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLVSH 124
             +   DVV+W  +++G +  G +  AI    DM     ++PNA+TLVS+L   +   + 
Sbjct: 158 AKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGAL 217

Query: 125 KLGKAIHAHSLR---NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
             G ++HA+ LR   + NE  +++  A+LD Y +C  L     +F  M  RN V+W+ +I
Sbjct: 218 FQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALI 277

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
           GG+       EA ++F++M        +  ++ + L  C+S++ L  G  +H+ ++ +  
Sbjct: 278 GGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLA-KSG 336

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
           +      GN++++MY K G +  A  +F+ +A KD IS+  ++SG   NG   +A  +F 
Sbjct: 337 IHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFK 396

Query: 302 LMIINAVFPDDVTFIALISACSH-----GGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
            M    V PD  T ++LI ACSH      G    G ++ + ++    I   +      +D
Sbjct: 397 KMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSL------ID 450

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           MY + G ++ +     +MP     S W  ++    IH
Sbjct: 451 MYAKCGRIDLSRQVFDKMPARDIVS-WNTMIAGYGIH 486



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 164/332 (49%), Gaps = 8/332 (2%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 120
           A Q+F+ +  PD  ++  +I   S  G    AID++  +    V PN  T   VL ACS+
Sbjct: 52  ARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKACSA 111

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           L     G+ IHAH+       ++ +  A++D YIRC        +F KMP R+VV+W  M
Sbjct: 112 LADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAM 171

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           + GYA  G    A++   +M+      PN +TLV++L   +   AL  G  VH+Y    Y
Sbjct: 172 LAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAY 231

Query: 241 -DLSVSN-LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQ 298
            D +    L+G A+++MY KC  +  A +VF+ +  +++++WS +I G  +     +A  
Sbjct: 232 LDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFN 291

Query: 299 LFSLMIINAV-FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
           LF  M++  + F    +  + +  C+    +  G  L  A+     I   +     ++ M
Sbjct: 292 LFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQL-HALLAKSGIHADLTAGNSLLSM 350

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           Y +AGL+ EA     E+ I+   S +GALL+ 
Sbjct: 351 YAKAGLINEATMLFDEIAIKDTIS-YGALLSG 381



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 95/231 (41%), Gaps = 18/231 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M +C    +  T    + ACS     Q     H  VI  G   +  I NSL+  Y     
Sbjct: 398 MQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGR 457

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           I  + Q+F+ +   D+VSW T+I+G    G  KEA  +F  +     +P+  T + +++A
Sbjct: 458 IDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAA 517

Query: 118 C--SSLVS---HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-K 171
           C  S LV+   H      H + +    E+ I +    +D   R G L         MP K
Sbjct: 518 CSHSGLVTEGKHWFDTMTHKYGILPRMEHYICM----VDLLARGGFLDEAYQFIQSMPLK 573

Query: 172 RNVVSWTTMIGG---YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
            +V  W  ++G    +      K+   + Q++    E   N   L N+ SA
Sbjct: 574 ADVRVWGALLGACRIHKNIDLGKQVSRMIQKL--GPEGTGNFVLLSNIFSA 622


>gi|357123975|ref|XP_003563682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Brachypodium distachyon]
          Length = 527

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 161/485 (33%), Positives = 271/485 (55%), Gaps = 40/485 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +T+   L+A  +     +  + HA  ++ G   D +  +SL+  Y  +     A ++F
Sbjct: 45  DSFTYPFVLRAIGVLKLSVEGRKAHAAAMKTGFWWDAYTASSLMDMYTLLGRADVARKLF 104

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           + +    +V W  +I    +CG +  AI +   ++   + P+  TLV+ ++ CS      
Sbjct: 105 DEMPHRALVVWNMMIRCYVRCGRYTAAIALAEEMERSGLTPDKVTLVTSVTVCSRAGDLS 164

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG+ IHA+ +  +   ++ + NA+LD Y++ G L     LF +MP RN++SWT ++ GYA
Sbjct: 165 LGRRIHAY-MDGVFGFSLPVANALLDMYMKNGCLEEAVKLFEQMPSRNIISWTILVSGYA 223

Query: 186 -------------------------------ERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
                                          + G  +EA+S+F+EM+  +  EP+  T+V
Sbjct: 224 FAGQLDKARVLFYQCSEKDLIMWTAMINACVQHGCFEEALSLFREMQ-MQRVEPDRFTIV 282

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
            +L+ C+++ AL  G+++H +   R  + V  ++G A+I+MY KCG V  +++VF  +  
Sbjct: 283 TLLTCCANLGALDQGEWIHQFAVDR-KMKVDAVLGTALIDMYAKCGHVKKSMEVFEQMQG 341

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           +D  +W+++I GLA NG   +AL+LF  M  + V PD +TFI ++SAC HGGLVD+G   
Sbjct: 342 RDTTAWTSIICGLATNGQAGRALELFEDMERSKVKPDSITFIGVLSACCHGGLVDEGRKQ 401

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAE-WSVWGALLNACRIH 393
           F AM  VY I P+++HY+C+V++ GRAGLL+EAE  IR++ I  +   ++GALL AC+  
Sbjct: 402 FHAMKDVYRIPPRIEHYSCLVNLLGRAGLLDEAEKLIRDIQINKDAMPLFGALLTACKAQ 461

Query: 394 RNDEMFDRIRQDLVNKKGVSVGTF-ALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCS 452
            N EM +R+ +  + ++G  +     LMSN +A A RWED  ++R ++    +KK  GCS
Sbjct: 462 GNVEMSERLTKR-IGEQGYQIPDVNLLMSNVYATASRWEDAIRVRSKMAHPTIKKTAGCS 520

Query: 453 WIEVN 457
            IEV 
Sbjct: 521 LIEVK 525


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 163/453 (35%), Positives = 258/453 (56%), Gaps = 6/453 (1%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +TF   LKAC+       +  IH  +I+YG   D+F+QN L+  Y     I  A  +F+ 
Sbjct: 155 FTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDG 214

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLG 127
           +    +VSWT+IISG ++ G   EA+ MF  +    VKP+   LVS+L A + +   + G
Sbjct: 215 LYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQG 274

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           ++IH   ++   E+   L  ++  FY +CG +      F +M   NV+ W  MI GYA+ 
Sbjct: 275 RSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKN 334

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G  +EAV++F  M  ++  +P+  T+ + + A + + +L   +++  Y+S + +      
Sbjct: 335 GHAEEAVNLFHYM-ISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVS-KSNYGSDIF 392

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V  ++I+MY KCG V  A +VF+  + KD + WS +I G  ++G G +A+ L+ +M    
Sbjct: 393 VNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAG 452

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           VFP+DVTFI L++AC+H GLV +G  LF  M   +EIVP+ +HY+CVVD+ GRAG L EA
Sbjct: 453 VFPNDVTFIGLLTACNHSGLVKEGWELFHCMKD-FEIVPRNEHYSCVVDLLGRAGYLGEA 511

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
            AFI ++PIE   SVWGALL+AC+I+R   + +     L +    + G +  +SN +A +
Sbjct: 512 CAFIMKIPIEPGVSVWGALLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASS 571

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
             W+    +R  +R  GL K  G S IE+N  +
Sbjct: 572 CLWDCVAHVRVLMREKGLNKDLGYSVIEINGKL 604



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 182/372 (48%), Gaps = 8/372 (2%)

Query: 26  HQKAL-EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIIS 84
           H++ L +IH  ++  G  H+ F+   L++    +  I  A ++F+   +PDV  W  II 
Sbjct: 68  HKRHLDQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIR 127

Query: 85  GLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNEN 141
             S+   +++ ++M+  +    V P+  T   VL AC+ L+   L   IH   ++    +
Sbjct: 128 SYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGS 187

Query: 142 NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME 201
           ++ + N ++  Y +CG +     +F  +  R +VSWT++I GYA+ G   EA+ +F +M 
Sbjct: 188 DVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQM- 246

Query: 202 KTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGD 261
           +    +P+   LV++L A + +  L  G+ +H ++  +  L     +  ++   Y KCG 
Sbjct: 247 RNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFV-IKMGLEDEPALLISLTAFYAKCGL 305

Query: 262 VGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISA 321
           V +A   F+ +   + I W+ +ISG A NG   +A+ LF  MI   + PD VT  + + A
Sbjct: 306 VTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLA 365

Query: 322 CSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 381
            +  G ++    +   +S        +     ++DMY + G +E A   + +   + +  
Sbjct: 366 SAQVGSLELAQWMDDYVSKS-NYGSDIFVNTSLIDMYAKCGSVEFARR-VFDRNSDKDVV 423

Query: 382 VWGALLNACRIH 393
           +W A++    +H
Sbjct: 424 MWSAMIMGYGLH 435


>gi|115451565|ref|NP_001049383.1| Os03g0216400 [Oryza sativa Japonica Group]
 gi|108706851|gb|ABF94646.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547854|dbj|BAF11297.1| Os03g0216400 [Oryza sativa Japonica Group]
 gi|215741245|dbj|BAG97740.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 392

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 164/395 (41%), Positives = 231/395 (58%), Gaps = 22/395 (5%)

Query: 75  DVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHS 134
           DVV WT  IS L++ G   EA+  F  +D  PNA TL SVL AC+ L    LG+AIH   
Sbjct: 7   DVVQWTKRISALARSGRAAEAVAAFARMDAAPNALTLASVLPACARLGDLALGRAIHGLW 66

Query: 135 LRNLNEN--NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKE 192
           LR    +  N I+DNA+LD Y +CG+LAS   LF +MP+R+V +WTTM+ G A  G  ++
Sbjct: 67  LRRGGGHGANPIVDNAVLDVYAKCGALASARRLFDEMPERDVFAWTTMVWGLARNGSPQD 126

Query: 193 AVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAV 252
           AV++F+ M    +A PN+AT+V+ L A ++  +L   K +HSY + +  L    +VGNA+
Sbjct: 127 AVAMFRGMLSDGDAAPNDATVVSALHAVATSGSLVSCKLLHSY-AVKQGLGGELVVGNAL 185

Query: 253 INMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD 312
           I+ Y KCGD  +A +VF  L   D +SW T+   +A++G  R+ALQLFSLM+   V PD 
Sbjct: 186 IDAYAKCGDAWLAFKVFVELPETDMVSWGTITRAMAVHGRCREALQLFSLMLRRGVRPDG 245

Query: 313 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIR 372
             F+AL++AC H G VDQ L+   AM+ VY I P+ +HY CV+D  GRAG L+ A    R
Sbjct: 246 AVFLALLTACCHAGRVDQALLFLGAMARVYGISPRREHYTCVLDACGRAGQLDRAGEIFR 305

Query: 373 EMPIEAEWSVWGALLNACRI-----------HRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           +MP  AE+    AL   C              R  E+F      L  +     GT+A++S
Sbjct: 306 QMP--AEYDAEKALGVYCSYAVSNGVAGVAGERLPELF------LDGEVDAGGGTYAVVS 357

Query: 422 NTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
            + A A RWED   +R+ +    ++K+  C+WIEV
Sbjct: 358 KSLADAGRWEDACAVRERMAERRIEKEAACTWIEV 392



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 119/224 (53%), Gaps = 13/224 (5%)

Query: 6   SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLH--DIFIQNSLLHFYVTVKDIFS 63
           ++ N  T    L AC+          IH   +  G  H  +  + N++L  Y     + S
Sbjct: 36  AAPNALTLASVLPACARLGDLALGRAIHGLWLRRGGGHGANPIVDNAVLDVYAKCGALAS 95

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACS 119
           A ++F+ +   DV +WTT++ GL++ G  ++A+ MF G+    D  PN  T+VS L A +
Sbjct: 96  ARRLFDEMPERDVFAWTTMVWGLARNGSPQDAVAMFRGMLSDGDAAPNDATVVSALHAVA 155

Query: 120 ---SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
              SLVS KL   +H+++++      +++ NA++D Y +CG       +FV++P+ ++VS
Sbjct: 156 TSGSLVSCKL---LHSYAVKQGLGGELVVGNALIDAYAKCGDAWLAFKVFVELPETDMVS 212

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
           W T+    A  G C+EA+ +F  M + +   P+ A  + +L+AC
Sbjct: 213 WGTITRAMAVHGRCREALQLFSLMLR-RGVRPDGAVFLALLTAC 255


>gi|218192339|gb|EEC74766.1| hypothetical protein OsI_10533 [Oryza sativa Indica Group]
          Length = 392

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 164/395 (41%), Positives = 231/395 (58%), Gaps = 22/395 (5%)

Query: 75  DVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHS 134
           DVV WT  IS L++ G   EA+  F  +D  PNA TL SVL AC+ L    LG+AIH   
Sbjct: 7   DVVKWTKRISALARSGRAAEAVAAFARMDAAPNALTLASVLPACARLGDLALGRAIHGLW 66

Query: 135 LRNLNEN--NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKE 192
           LR    +  N I+DNA+LD Y +CG+LAS   LF +MP+R+V +WTTM+ G A  G  ++
Sbjct: 67  LRRGGGHGANPIVDNAVLDVYAKCGALASARRLFDEMPERDVFAWTTMVWGLARNGSPQD 126

Query: 193 AVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAV 252
           AV++F+ M    +A PN+AT+V+ L A ++  +L   K +HSY + +  L    +VGNA+
Sbjct: 127 AVAMFRGMLSDGDAAPNDATVVSALHAVATSGSLVSCKLLHSY-AVKQGLGGELVVGNAL 185

Query: 253 INMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD 312
           I+ Y KCGD  +A +VF  L   D +SW T+   +A++G  R+ALQLFSLM+   V PD 
Sbjct: 186 IDAYAKCGDAWLAFKVFVELPETDMVSWGTITRAMAVHGRCREALQLFSLMLRRGVRPDG 245

Query: 313 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIR 372
             F+AL++AC H G VDQ L+   AM+ VY I P+ +HY CV+D  GRAG L+ A    R
Sbjct: 246 AVFLALLTACCHAGRVDQALLFLGAMARVYGISPRREHYTCVLDACGRAGQLDRAGEIFR 305

Query: 373 EMPIEAEWSVWGALLNACRI-----------HRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           +MP  AE+    AL   C              R  E+F      L  +     GT+A++S
Sbjct: 306 QMP--AEYDAEKALGVYCSYAVSNGVAGVAGERLPELF------LDGEVDAGGGTYAVVS 357

Query: 422 NTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
            + A A RWED   +R+ +    ++K+  C+WIEV
Sbjct: 358 KSLADAGRWEDACAVRERMAERRIEKEAACTWIEV 392



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 119/224 (53%), Gaps = 13/224 (5%)

Query: 6   SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLH--DIFIQNSLLHFYVTVKDIFS 63
           ++ N  T    L AC+          IH   +  G  H  +  + N++L  Y     + S
Sbjct: 36  AAPNALTLASVLPACARLGDLALGRAIHGLWLRRGGGHGANPIVDNAVLDVYAKCGALAS 95

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACS 119
           A ++F+ +   DV +WTT++ GL++ G  ++A+ MF G+    D  PN  T+VS L A +
Sbjct: 96  ARRLFDEMPERDVFAWTTMVWGLARNGSPQDAVAMFRGMLSDGDAAPNDATVVSALHAVA 155

Query: 120 ---SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
              SLVS KL   +H+++++      +++ NA++D Y +CG       +FV++P+ ++VS
Sbjct: 156 TSGSLVSCKL---LHSYAVKQGLGGELVVGNALIDAYAKCGDAWLAFKVFVELPETDMVS 212

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
           W T+    A  G C+EA+ +F  M + +   P+ A  + +L+AC
Sbjct: 213 WGTITRAMAVHGRCREALQLFSLMLR-RGVRPDGAVFLALLTAC 255


>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Glycine max]
          Length = 563

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 159/461 (34%), Positives = 266/461 (57%), Gaps = 13/461 (2%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S +H+TF   LKAC +         IH+ +++ G   D +    LLH YV+  D+ S  +
Sbjct: 101 SPDHFTFPFVLKACCVIADQDCGKCIHSCIVKSGFEADAYTATGLLHMYVSCADMKSGLK 160

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVS 123
           +F+++   +VV+WT +I+G  K     EA+ +F  +   +V+PN  T+V+ L AC+    
Sbjct: 161 VFDNIPKWNVVAWTCLIAGYVKNNQPYEALKVFEDMSHWNVEPNEITMVNALIACAHSRD 220

Query: 124 HKLGKAIHAH-------SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
              G+ +H            + + +NIIL  AIL+ Y +CG L     LF KMP+RN+VS
Sbjct: 221 IDTGRWVHQRIRKAGYDPFMSTSNSNIILATAILEMYAKCGRLKIARDLFNKMPQRNIVS 280

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           W +MI  Y +    +EA+ +F +M  T    P++AT ++VLS C+   AL+ G+ VH+Y+
Sbjct: 281 WNSMINAYNQYERHQEALDLFFDMW-TSGVYPDKATFLSVLSVCAHQCALALGQTVHAYL 339

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
             +  ++    +  A+++MY K G++G A ++F+ L  KD + W+++I+GLAM+G G +A
Sbjct: 340 -LKTGIATDISLATALLDMYAKTGELGNAQKIFSSLQKKDVVMWTSMINGLAMHGHGNEA 398

Query: 297 LQLFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVV 355
           L +F  M  ++ + PD +T+I ++ ACSH GLV++    F+ M+ +Y +VP  +HY C+V
Sbjct: 399 LSMFQTMQEDSSLVPDHITYIGVLFACSHVGLVEEAKKHFRLMTEMYGMVPGREHYGCMV 458

Query: 356 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVG 415
           D+  RAG   EAE  +  M ++   ++WGALLN C+IH N  + ++++  L   +    G
Sbjct: 459 DLLSRAGHFREAERLMETMTVQPNIAIWGALLNGCQIHENVCVANQVKVRLKELEPCQSG 518

Query: 416 TFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
              L+SN +A A RWE+ N  R  ++   + K  G S +E+
Sbjct: 519 VHILLSNIYAKAGRWEEVNVTRKVMKHKRITKTIGHSSVEM 559



 Score = 38.1 bits (87), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 10/118 (8%)

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYIST----RYDLSVSNLVGNAVINMYVKCGDVGI 264
           ++ T++++L+ C S+  L   K +H  I T    +  + +S L+   V + +   GD+  
Sbjct: 3   HQNTILSLLAKCKSMREL---KKLHGLIVTTPTIKSIIPLSKLIDFCVDSEF---GDINY 56

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
           A  V   +       W+++I G   +   R ++ L+  MI N   PD  TF  ++ AC
Sbjct: 57  ADLVLRQIHNPSVYIWNSMIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFPFVLKAC 114


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 153/455 (33%), Positives = 261/455 (57%), Gaps = 6/455 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + Y  +  L ACS+    +   +IHA+V+  G   D+ + N L+ FY     + +  ++F
Sbjct: 251 DRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLF 310

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHK 125
           + +V  +++SWTT+ISG  +  F  EA+ +F  ++    KP+     SVL++C S  + +
Sbjct: 311 DQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALE 370

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ +HA++++   E++  + N ++D Y +   L     +F  M ++NV+S+  MI GY+
Sbjct: 371 QGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYS 430

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
            +    EA+ +F EM + +  +PNE T   +++A S++++L  G+  H+ +  +  L   
Sbjct: 431 SQEKLSEALELFHEM-RVRLQKPNEFTFAALITAASNLASLRHGQQFHNQL-VKMGLDFC 488

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V NA+++MY KCG +  A ++FN   ++D + W+++IS  A +G   +AL +F  M+ 
Sbjct: 489 PFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMK 548

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             + P+ VTF+A++SACSH G V+ GL  F +M   + I P  +HYACVV + GR+G L 
Sbjct: 549 EGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPG-FGIKPGTEHYACVVSLLGRSGKLF 607

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EA+ FI +MPIE    VW +LL+ACRI  N E+     +  ++      G++ L+SN FA
Sbjct: 608 EAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFA 667

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
               W D  K+RD +    + K+ G SWIEVN  +
Sbjct: 668 SKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNKV 702



 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 134/452 (29%), Positives = 234/452 (51%), Gaps = 22/452 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +     ++AC+     +K  ++H  V+  G   D+++  SL+ FY    +I  A  +F
Sbjct: 150 NEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVF 209

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           + +     V+WTTII+G +KCG    ++++F  +   +V P+   + SVLSACS L   +
Sbjct: 210 DQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLE 269

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK IHA+ LR   E ++ + N ++DFY +C  + +   LF +M  +N++SWTTMI GY 
Sbjct: 270 GGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYM 329

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +  F  EA+ +F EM +    +P+     +VL++C S  AL  G+ VH+Y + + +L   
Sbjct: 330 QNSFDWEAMKLFGEMNRLG-WKPDGFACTSVLTSCGSREALEQGRQVHAY-TIKANLESD 387

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V N +I+MY K   +  A +VF+++A ++ IS++ +I G +      +AL+LF  M +
Sbjct: 388 EFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRV 447

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV-YEIVPQMQHYACVVDMYGRAGLL 364
               P++ TF ALI+A S+   +  G      +  +  +  P + +   +VDMY + G +
Sbjct: 448 RLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTN--ALVDMYAKCGSI 505

Query: 365 EEAEAFIREMPIEAEWS---VWGALLNACRIHRNDE----MFDRIRQDLVNKKGVSVGTF 417
           EEA    R+M   + W     W ++++    H   E    MF  + ++ +    V   TF
Sbjct: 506 EEA----RKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYV---TF 558

Query: 418 ALMSNTFAGADRWEDTNKIRDEIRRMGLKKKT 449
             + +  + A R ED     + +   G+K  T
Sbjct: 559 VAVLSACSHAGRVEDGLNHFNSMPGFGIKPGT 590



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 183/348 (52%), Gaps = 21/348 (6%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           IH  +I  G   D F+ N L++       + +A  +F+ +   ++++W++++S  S+ G+
Sbjct: 71  IHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGY 130

Query: 92  HKEAIDMFCGIDVK----PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
            +EA+ +F  +  K    PN   L SV+ AC+ L   + G  +H   +R+  + ++ +  
Sbjct: 131 SEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGT 190

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           +++DFY + G++     +F ++ ++  V+WTT+I GY + G    ++ +F +M +T    
Sbjct: 191 SLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETN-VV 249

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYI---STRYDLSVSNLVGNAVINMYVKCGDVGI 264
           P+   + +VLSACS +  L  GK +H+Y+    T  D+SV N+    +I+ Y KC  V  
Sbjct: 250 PDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNV----LIDFYTKCNRVKA 305

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
             ++F+ +  K+ ISW+T+ISG   N    +A++LF  M      PD     +++++C  
Sbjct: 306 GRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGS 365

Query: 325 GGLVDQGLILFKAMSTVYEIVPQMQHYACV----VDMYGRAGLLEEAE 368
              ++QG  +       Y I   ++    V    +DMY ++ LL +A+
Sbjct: 366 REALEQGRQVH-----AYTIKANLESDEFVKNGLIDMYAKSNLLIDAK 408



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 115/206 (55%), Gaps = 5/206 (2%)

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           K IH   + +  +++  L N +++   +   + +   +F KMP +N+++W++M+  Y+++
Sbjct: 69  KIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQ 128

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G+ +EA+ VF ++++     PNE  L +V+ AC+ +  +  G  +H ++  R        
Sbjct: 129 GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFV-VRSGFDQDVY 187

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA--LQLFSLMII 305
           VG ++I+ Y K G++  A  VF+ L+ K  ++W+T+I+G     CGR A  L+LF+ M  
Sbjct: 188 VGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYT--KCGRSAVSLELFAQMRE 245

Query: 306 NAVFPDDVTFIALISACSHGGLVDQG 331
             V PD     +++SACS    ++ G
Sbjct: 246 TNVVPDRYVVSSVLSACSMLEFLEGG 271


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 150/452 (33%), Positives = 255/452 (56%), Gaps = 26/452 (5%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L  C+ +        +H+  I+      I   N+LL  Y    D+  A ++F  +
Sbjct: 253 TIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKM 312

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
              +VVSWT++I+G ++ G    AI +   ++   VK +   + S+L AC+   S   GK
Sbjct: 313 GERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGK 372

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H +   N  E+N+ + NA++D Y +CGS+ +   +F  M  ++++SW TMIG      
Sbjct: 373 DVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIG------ 426

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
                           E +P+  T+  VL AC+S+SAL  GK +H YI  R   S    V
Sbjct: 427 ----------------ELKPDSRTMACVLPACASLSALERGKEIHGYI-LRNGYSSDRHV 469

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            NA++++YVKCG +G+A  +F+M+  KD +SW+ +I+G  M+G G +A+  F+ M    +
Sbjct: 470 ANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGI 529

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD+V+FI+++ ACSH GL++QG   F  M   + I P+++HYAC+VD+  R G L +A 
Sbjct: 530 EPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAY 589

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
            FI  +PI  + ++WGALL  CR + + E+ +++ + +   +  + G + L++N +A A+
Sbjct: 590 EFIETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENSGYYVLLANIYAEAE 649

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +WE+  ++R++I + GL+K  GCSWIE+   +
Sbjct: 650 KWEEVKRLREKIGKQGLRKNPGCSWIEIKGKV 681



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 110/365 (30%), Positives = 178/365 (48%), Gaps = 51/365 (13%)

Query: 36  VIEYGHLHDIFIQNSLLHFYVTV------KDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
           V EY  + D   + S+  F + V      K   SA ++F+ +   DV+SW ++ISG    
Sbjct: 172 VSEYAKIGDF--KESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSN 229

Query: 90  GFHKEAID-----MFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
           G  +  +      M+ GIDV  +  T++SVL  C++  +  LGKA+H+ ++++  E  I 
Sbjct: 230 GLTERGLGIYKQMMYLGIDV--DLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRIN 287

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
             N +LD Y +CG L     +F KM +RNVVSWT+MI GY   G    A+ + Q+MEK +
Sbjct: 288 FSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEK-E 346

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
             + +   + ++L AC+   +L  GK VH YI    ++  +  V NA+++MY KCG +  
Sbjct: 347 GVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN-NMESNLFVCNALMDMYAKCGSMEA 405

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
           A  VF+ +  KD ISW+T+I  L                      PD  T   ++ AC+ 
Sbjct: 406 ANSVFSTMVVKDIISWNTMIGELK---------------------PDSRTMACVLPACAS 444

Query: 325 GGLVDQ-----GLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIE-- 377
              +++     G IL    S+   +   +      VD+Y + G+L  A      +P +  
Sbjct: 445 LSALERGKEIHGYILRNGYSSDRHVANAL------VDLYVKCGVLGLARLLFDMIPSKDL 498

Query: 378 AEWSV 382
             W+V
Sbjct: 499 VSWTV 503



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 146/329 (44%), Gaps = 74/329 (22%)

Query: 110 TLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAI----LDFYIRCGSLASCGYL 165
           T  SVL  C+ L S   GK +H+     +  N++ +D A+    + FY  CG L     +
Sbjct: 101 TYSSVLQLCAGLKSFTDGKKVHSI----IKSNSVGVDEALGLKLVSFYATCGDLKEGRRV 156

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEM-EKTKEAEPNE-------------- 210
           F  M K+NV  W  M+  YA+ G  KE++ +F+ M EK  E +  E              
Sbjct: 157 FDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDV 216

Query: 211 -----------------------------------ATLVNVLSACSSISALSFGKYVHSY 235
                                              AT+++VL  C++   LS GK VHS 
Sbjct: 217 ISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSL 276

Query: 236 -ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
            I + ++  ++    N +++MY KCGD+  A++VF  +  ++ +SW+++I+G   +G   
Sbjct: 277 AIKSSFERRIN--FSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSD 334

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP----QMQH 350
            A++L   M    V  D V   +++ AC+  G +D G         V++ +     +   
Sbjct: 335 GAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNG-------KDVHDYIKANNMESNL 387

Query: 351 YAC--VVDMYGRAGLLEEAEAFIREMPIE 377
           + C  ++DMY + G +E A +    M ++
Sbjct: 388 FVCNALMDMYAKCGSMEAANSVFSTMVVK 416



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 113/271 (41%), Gaps = 59/271 (21%)

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV- 262
           K++E    T  +VL  C+ + + + GK VHS I +   + V   +G  +++ Y  CGD+ 
Sbjct: 93  KKSELETKTYSSVLQLCAGLKSFTDGKKVHSIIKSN-SVGVDEALGLKLVSFYATCGDLK 151

Query: 263 -------------------------------------------GI-------AIQVFNML 272
                                                      GI       A ++F+ L
Sbjct: 152 EGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKL 211

Query: 273 AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL 332
             +D ISW+++ISG   NG   + L ++  M+   +  D  T I+++  C++ G +  G 
Sbjct: 212 CDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGK 271

Query: 333 ILFK-AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-C 390
            +   A+ + +E   ++     ++DMY + G L+ A     +M  E     W +++    
Sbjct: 272 AVHSLAIKSSFE--RRINFSNTLLDMYSKCGDLDGALRVFEKMG-ERNVVSWTSMIAGYT 328

Query: 391 RIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           R  R+D     ++Q  + K+GV +   A+ S
Sbjct: 329 RDGRSDGAIKLLQQ--MEKEGVKLDVVAITS 357


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 160/456 (35%), Positives = 247/456 (54%), Gaps = 39/456 (8%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S + +TF  ALKA + +   +  +++H+    +G    IF+  +L+  Y    D  SA +
Sbjct: 100 SPDSFTFAFALKAVANSRHLRPGIQLHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARR 159

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKL 126
           +F+ +  P+VV+W  +++   +CG  + A D+F  + V+                     
Sbjct: 160 VFDEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFGCMPVR--------------------- 198

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
                          N+   N +L  Y + G L     +F +MP R+ VSW+TMI G+A 
Sbjct: 199 ---------------NLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAH 243

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
            G   EA   F+E+ + +E   NE +L  VLSAC+   A  FGK +H ++     L V +
Sbjct: 244 NGCFDEAFGFFRELLR-EEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGS 302

Query: 247 LVGNAVINMYVKCGDVGIAIQVF-NMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
            V NA+I+ Y KCG+V +A  VF NM   +  +SW+++I+GLAM+GCG +A+QLF  M  
Sbjct: 303 -VNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEE 361

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
           + V PD +TFI+L+ ACSH GLV++G  LF  M  +Y I P ++HY C+VD+YGRA  L+
Sbjct: 362 SGVRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQ 421

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           +A  FI EMP+     +W  LL AC IH N EM + ++  L      + G   L+SN +A
Sbjct: 422 KAYEFICEMPVSPNAIIWRTLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVYA 481

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
            A +W+D + IR  +    +KK  G S IE++  I+
Sbjct: 482 VAGKWKDVSSIRRTMTEHSMKKTPGWSMIEIDKVIY 517


>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
          Length = 669

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 165/456 (36%), Positives = 263/456 (57%), Gaps = 15/456 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L AC       +   ++  V ++G   D+ I+N+L+  Y     +  A + F
Sbjct: 221 NKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAF 280

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
            ++      SW T+I G  +   HKEA+ +F  +    V P+  TLVSVLSAC+ L   +
Sbjct: 281 QAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQL--GE 338

Query: 126 LGKAIHAHSLRNLNENNI----ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
           L K +H HS   + +N I    IL N++++ Y +CG +A+   +F  M K++VVSWT M+
Sbjct: 339 LRKGMHVHSY--IKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMV 396

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
            GY +      A ++F+EM K  E   +E  LV++LSACS + AL  G+ +HSYI    +
Sbjct: 397 CGYVKGHQFTMAFNLFEEM-KIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIE-EMN 454

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
           ++    + +A+++MY KCG +  A ++F  + +K  +SW+ +I GLA NG G++A++LF 
Sbjct: 455 VAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFD 514

Query: 302 LMI-INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
            M+ +    PD +T  A++ AC+H G+VD+GL  F  MS++  +VP  +HY C+VD+ GR
Sbjct: 515 QMLELQDPKPDGITLKAVLGACAHVGMVDEGLRYFYLMSSL-GVVPDTEHYGCIVDLLGR 573

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           AG+L+EA  FI++MPIE    +WG+LL ACR+H   ++   I Q +VN     VG   L+
Sbjct: 574 AGMLDEAFHFIKKMPIEPNPVIWGSLLAACRVHHRMDLGKVIGQHIVNVAPNDVGVHVLV 633

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           SN  A   +W+D   +R  +   G++K  G S ++V
Sbjct: 634 SNLHAEESQWDDVEHVRGLMGSRGIEKTPGHSSVQV 669



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 112/361 (31%), Positives = 190/361 (52%), Gaps = 7/361 (1%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           IHA V   G   D+F+ + L+++Y   + +  A ++F  +   DVVSWT++IS  ++CG 
Sbjct: 143 IHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVSWTSMISACAQCGH 202

Query: 92  HKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148
             + + M   +  +   PN  T++S+LSAC    +   G+ ++    +   E ++ + NA
Sbjct: 203 WDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNA 262

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
           ++  Y +CG L+     F  MP R   SW T+I G+ +    KEA+ +F+EM       P
Sbjct: 263 LISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEM-LLHGVTP 321

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           +  TLV+VLSAC+ +  L  G +VHSYI     +   N++ N++INMY KCGD+  A +V
Sbjct: 322 DGITLVSVLSACAQLGELRKGMHVHSYIKDN-GICCDNILTNSLINMYAKCGDMAAAERV 380

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F  +  KD +SW+ ++ G         A  LF  M I  V   ++  ++L+SACS  G +
Sbjct: 381 FQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGAL 440

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
           D+G  +   +  +  +   +   + +VDMY + G ++ A    R+M  +   S W A++ 
Sbjct: 441 DKGREIHSYIEEM-NVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLS-WNAMIG 498

Query: 389 A 389
            
Sbjct: 499 G 499



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 169/311 (54%), Gaps = 11/311 (3%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVK---DIFSAHQIFNSVVFPDVVSWTTIISGLS 87
           E+H  ++      D F+   L+    +     D+  A ++F+ +  P+   W  +I G S
Sbjct: 35  ELHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFDGMAQPNAFVWNCMIRGYS 94

Query: 88  KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKL---GKAIHAHSLRNLNEN 141
            C   ++A+ +F  +    V P+  T+ +V+SA ++    K    G AIHA   R    +
Sbjct: 95  SCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGLKWRSNGDAIHALVRRIGFTS 154

Query: 142 NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME 201
           ++ + + ++++Y    S+     +F +M +R+VVSWT+MI   A+ G   + + +  EM+
Sbjct: 155 DVFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQ 214

Query: 202 KTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGD 261
             +   PN+ T++++LSAC    A+  G++V++ +  ++ +     + NA+I+MY KCG 
Sbjct: 215 -AEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVG-KFGIEADVDIRNALISMYTKCGC 272

Query: 262 VGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISA 321
           +  A++ F  +  +   SW+T+I G   N   ++AL++F  M+++ V PD +T ++++SA
Sbjct: 273 LSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSA 332

Query: 322 CSHGGLVDQGL 332
           C+  G + +G+
Sbjct: 333 CAQLGELRKGM 343


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 170/482 (35%), Positives = 261/482 (54%), Gaps = 56/482 (11%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTV----KDIFSAHQIFNSVVFPDVVSWTTIISGL 86
           +IHA  I+ G + D      +L F  T     +D+  AH+IFN +   +  SW TII G 
Sbjct: 34  QIHAVFIKSGQIRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGF 93

Query: 87  SKCGFHKE--AIDMFCGID----VKPNANTLVSVLSACSSLVSHKLGKAIHAHSL----- 135
           S+    K   AI +FC +     ++PN  T  SVL AC+     + GK IH  +L     
Sbjct: 94  SESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLKACAKTGKIQQGKQIHGLALKYGFG 153

Query: 136 ----------------------------------------RNLNENNIILDNAILDFYIR 155
                                                   R   +  ++L N ++D Y+R
Sbjct: 154 GDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMVMMIDRRKRDGEVVLWNVMIDGYMR 213

Query: 156 CGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVN 215
            G   +   LF KM +R+VVSW TMI GY++ GF K+AV VF+EM+K ++  PN  TLV+
Sbjct: 214 LGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVS 273

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           VL A S + +L  G+++H Y +    + + +++G+A+I+MY KCG +  AI VF  L  +
Sbjct: 274 VLPAVSRLGSLELGEWLHLY-AEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRE 332

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILF 335
           + I+WS +I+G A++G    A+  F  M    V P DV +I L++ACSH GLV++G   F
Sbjct: 333 NVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVEEGRRYF 392

Query: 336 KAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN 395
             M +V  + P+++HY C+VD+ GR GLL+EAE FI  MPI+ +  +W ALL ACR+HRN
Sbjct: 393 SQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFILNMPIKPDDVIWKALLGACRMHRN 452

Query: 396 DEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
            EM  R+   L++      G +  +SN +A    W + +++R  ++ M ++K  GCSWI+
Sbjct: 453 VEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEMDIRKDPGCSWID 512

Query: 456 VN 457
           ++
Sbjct: 513 ID 514



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 134/277 (48%), Gaps = 50/277 (18%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYV------------ 56
           N +TF   LKAC+     Q+  +IH   ++YG   D F+ ++L+  YV            
Sbjct: 120 NRFTFPSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLF 179

Query: 57  ---------------------------------TVKDIFSAHQIFNSVVFPDVVSWTTII 83
                                             + D  +A  +F+ +    VVSW T+I
Sbjct: 180 YKNIIEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMI 239

Query: 84  SGLSKCGFHKEAIDMF----CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLN 139
           SG S+ GF K+A+++F     G D++PN  TLVSVL A S L S +LG+ +H ++  +  
Sbjct: 240 SGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGI 299

Query: 140 ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQE 199
             + +L +A++D Y +CG +     +F ++P+ NV++W+ MI G+A  G   +A+  F +
Sbjct: 300 RIDDVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCK 359

Query: 200 MEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           M +     P++   +N+L+ACS    +  G+   S +
Sbjct: 360 MRQAG-VRPSDVAYINLLTACSHAGLVEEGRRYFSQM 395


>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 154/411 (37%), Positives = 230/411 (55%), Gaps = 37/411 (9%)

Query: 50  SLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN 109
           S+++ Y+   D+ SA ++F+     DVV W  ++SG  + G   EA  +F          
Sbjct: 49  SMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLF---------- 98

Query: 110 TLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKM 169
                                  H + N    +++  N +L  Y   G++ +   LF +M
Sbjct: 99  -----------------------HEMPN---RDVMFWNTVLKGYATNGNVEALEGLFEEM 132

Query: 170 PKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 229
           P+RN+ SW  +IGGYA  G   E +  F+ M    +  PN+ATLV VLSAC+ + AL  G
Sbjct: 133 PERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLG 192

Query: 230 KYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAM 289
           K+VH Y  +   L  +  VGNA+++MY KCG +  AI VF  +  KD ISW+T+I GLAM
Sbjct: 193 KWVHVYAESS-GLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAM 251

Query: 290 NGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQ 349
           +  G  AL LF  M      PD +TFI ++ AC+H GLV+ G   F++M+  Y I+PQ++
Sbjct: 252 HSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIE 311

Query: 350 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNK 409
           HY C+VDM  RAG LE+A AF+R+MP+EA+  +W  LL ACRI++N E+ +   Q L+  
Sbjct: 312 HYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIEL 371

Query: 410 KGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +  +   + ++SN +  A RWED  +++  +R  G KK  GCS IEVN ++
Sbjct: 372 EPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAV 422



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 97/207 (46%), Gaps = 29/207 (14%)

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224
           LF ++P  N+  W +M  GYA+    +E   +F EM +            NV++  S I+
Sbjct: 7   LFDQIPDPNIALWNSMFRGYAQSESYRE---IFCEMFER-----------NVVAWTSMIN 52

Query: 225 ALSFGKYVHS--YISTR--YDLSVSN--LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI 278
                 Y+ S   +S R  +DL+     ++ N +++ Y++ GD+  A ++F+ +  +D +
Sbjct: 53  G-----YILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVM 107

Query: 279 SWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM 338
            W+TV+ G A NG       LF  M    +F    ++ ALI   +H GL  + L  FK M
Sbjct: 108 FWNTVLKGYATNGNVEALEGLFEEMPERNIF----SWNALIGGYAHNGLFFEVLGSFKRM 163

Query: 339 STVYEIVPQMQHYACVVDMYGRAGLLE 365
            +  ++ P       V+    R G L+
Sbjct: 164 LSESDVPPNDATLVTVLSACARLGALD 190



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 93/220 (42%), Gaps = 18/220 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L AC+          +H +    G   ++++ N+L+  Y     I +A  +F
Sbjct: 172 NDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVF 231

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   D++SW T+I GL+      +A+++F  +     KP+  T + +L AC+ +   +
Sbjct: 232 RGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVE 291

Query: 126 LGKAIHAHSLRNLNENNIILDN-----AILDFYIRCGSLASCGYLFVKMP-KRNVVSWTT 179
            G A      +++ ++ +I+        ++D   R G L        KMP + + V W  
Sbjct: 292 DGFAY----FQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAG 347

Query: 180 MIGG---YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNV 216
           ++G    Y      + A+    E+E    A  N   L N+
Sbjct: 348 LLGACRIYKNVELAELALQRLIELEPKNPA--NYVMLSNI 385


>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
          Length = 669

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 165/456 (36%), Positives = 263/456 (57%), Gaps = 15/456 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L AC       +   ++  V ++G   D+ I+N+L+  Y     +  A + F
Sbjct: 221 NKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAF 280

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
            ++      SW T+I G  +   HKEA+ +F  +    V P+  TLVSVLSAC+ L   +
Sbjct: 281 QAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQL--GE 338

Query: 126 LGKAIHAHSLRNLNENNI----ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
           L K +H HS   + +N I    IL N++++ Y +CG +A+   +F  M K++VVSWT M+
Sbjct: 339 LRKGMHVHSY--IKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMV 396

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
            GY +      A ++F+EM K  E   +E  LV++LSACS + AL  G+ +HSYI    +
Sbjct: 397 CGYVKGHQFTMAFNLFEEM-KIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIE-EMN 454

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
           ++    + +A+++MY KCG +  A ++F  + +K  +SW+ +I GLA NG G++A++LF 
Sbjct: 455 VAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFD 514

Query: 302 LMI-INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
            M+ +    PD +T  A++ AC+H G+VD+GL  F  MS++  +VP  +HY C+VD+ GR
Sbjct: 515 QMLELQDPKPDGITLKAVLGACAHVGMVDEGLRYFYLMSSL-GVVPDTEHYGCIVDLLGR 573

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           AG+L+EA  FI++MPIE    +WG+LL ACR+H   ++   I Q +VN     VG   L+
Sbjct: 574 AGMLDEAFHFIKKMPIEPNPVIWGSLLAACRVHHRMDLGKVIGQHIVNVAPNDVGVHVLV 633

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           SN  A   +W+D   +R  +   G++K  G S ++V
Sbjct: 634 SNLHAEESQWDDVEHVRGLMGSRGIEKTPGHSSVQV 669



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 112/361 (31%), Positives = 190/361 (52%), Gaps = 7/361 (1%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           IHA V   G   D+F+ + L+++Y   + +  A ++F  +   DVVSWT++IS  ++CG 
Sbjct: 143 IHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVSWTSMISACAQCGH 202

Query: 92  HKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148
             + + M   +  +   PN  T++S+LSAC    +   G+ ++    +   E ++ + NA
Sbjct: 203 WDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNA 262

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
           ++  Y +CG L+     F  MP R   SW T+I G+ +    KEA+ +F+EM       P
Sbjct: 263 LISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEM-LLHGVTP 321

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           +  TLV+VLSAC+ +  L  G +VHSYI     +   N++ N++INMY KCGD+  A +V
Sbjct: 322 DGITLVSVLSACAQLGELRKGMHVHSYIKDN-GICCDNILTNSLINMYAKCGDMAAAERV 380

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F  +  KD +SW+ ++ G         A  LF  M I  V   ++  ++L+SACS  G +
Sbjct: 381 FQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGAL 440

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
           D+G  +   +  +  +   +   + +VDMY + G ++ A    R+M  +   S W A++ 
Sbjct: 441 DKGREIHSYIEEM-NVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLS-WNAMIG 498

Query: 389 A 389
            
Sbjct: 499 G 499



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 169/311 (54%), Gaps = 11/311 (3%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVK---DIFSAHQIFNSVVFPDVVSWTTIISGLS 87
           E+H  ++      D F+   L+    +     D+  A ++F+ +  P+   W  +I G S
Sbjct: 35  ELHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFDGMAQPNAFVWNCMIRGYS 94

Query: 88  KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKL---GKAIHAHSLRNLNEN 141
            C   ++A+ +F  +    V P+  T+ +V+SA ++    K    G AIHA   R    +
Sbjct: 95  SCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGLKWRSNGDAIHALVRRIGFTS 154

Query: 142 NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME 201
           ++ + + ++++Y    S+     +F +M +R+VVSWT+MI   A+ G   + + +  EM+
Sbjct: 155 DVFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQ 214

Query: 202 KTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGD 261
             +   PN+ T++++LSAC    A+  G++V++ +  ++ +     + NA+I+MY KCG 
Sbjct: 215 -AEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVG-KFGIEADVDIRNALISMYTKCGC 272

Query: 262 VGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISA 321
           +  A++ F  +  +   SW+T+I G   N   ++AL++F  M+++ V PD +T ++++SA
Sbjct: 273 LSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSA 332

Query: 322 CSHGGLVDQGL 332
           C+  G + +G+
Sbjct: 333 CAQLGELRKGM 343


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 153/449 (34%), Positives = 252/449 (56%), Gaps = 5/449 (1%)

Query: 12   TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
            TF   L  C      +   +IH  +IE G   D+ + N+L++ Y+    +  A+++F+S+
Sbjct: 589  TFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSL 648

Query: 72   VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
               +V+SWT +I G +  G  ++A ++F  +     KP  +T  S+L AC S      GK
Sbjct: 649  RHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGK 708

Query: 129  AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
             + AH L +  E +  + NA++  Y + GS+     +F KMP R+++SW  MI GYA+ G
Sbjct: 709  KVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNG 768

Query: 189  FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
                A+    +M++ +    N+ + V++L+ACSS SAL  GK VH+ I  R  +     V
Sbjct: 769  LGGTALQFAYQMQE-QGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKR-KMQGDVRV 826

Query: 249  GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            G A+I+MY KCG +  A +VF+    K+ ++W+ +I+  A +G   +AL  F+ M    +
Sbjct: 827  GAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGI 886

Query: 309  FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
             PD  TF +++SAC+H GLV +G  +F ++ + + + P ++HY C+V + GRAG  +EAE
Sbjct: 887  KPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAE 946

Query: 369  AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
              I +MP   + +VW  LL ACRIH N  + +    + +     +   + L+SN +A A 
Sbjct: 947  TLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAG 1006

Query: 429  RWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            RW+D  KIR  +   G++K+ G SWIEV+
Sbjct: 1007 RWDDVAKIRRVMEGRGIRKEPGRSWIEVD 1035



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 124/448 (27%), Positives = 228/448 (50%), Gaps = 12/448 (2%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           P+  N   +   ++ C+      +A  IHA ++E G   DIF+ N L++ YV  + +  A
Sbjct: 77  PTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDA 136

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSL 121
           HQ+F  +   DV+SW ++IS  ++ GF K+A  +F  +      P+  T +S+L+AC S 
Sbjct: 137 HQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSP 196

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
              + GK IH+  +    + +  + N++L+ Y +C  L S   +F  + +R+VVS+ TM+
Sbjct: 197 AELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTML 256

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
           G YA++ + +E + +F +M  ++   P++ T +N+L A ++ S L  GK +H  ++    
Sbjct: 257 GLYAQKAYVEECIGLFGQM-SSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHK-LAVNEG 314

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
           L+    VG A+  M+V+CGDV  A Q     A +D + ++ +I+ LA +G   +A + + 
Sbjct: 315 LNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYY 374

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            M  + V  +  T++++++ACS    +  G ++   +S V      +Q    ++ MY R 
Sbjct: 375 QMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGH-SSDVQIGNSLISMYARC 433

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDRIRQDLVNKKGVSVG--TFA 418
           G L  A      MP + +   W A++    R     E     +Q  +  +GV  G  TF 
Sbjct: 434 GDLPRARELFNTMP-KRDLISWNAIIAGYARREDRGEAMKLYKQ--MQSEGVKPGRVTFL 490

Query: 419 LMSNTFAGADRWEDTNKIRDEIRRMGLK 446
            + +    +  + D   I ++I R G+K
Sbjct: 491 HLLSACTNSSAYSDGKMIHEDILRSGIK 518



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/386 (29%), Positives = 207/386 (53%), Gaps = 9/386 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           TF   L AC+ +  +     IH  ++  G   +  + N+L++ Y     I  A  +F   
Sbjct: 488 TFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGT 547

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
              D++SW ++I+G ++ G ++ A  +F  +    ++P+  T  SVL  C +  + +LG+
Sbjct: 548 RARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGR 607

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IH   + +  + ++ L NA+++ YIRCGSL     +F  +  RNV+SWT MIGG+A++G
Sbjct: 608 QIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQG 667

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSVSNL 247
             ++A  +F +M+     +P ++T  ++L AC S + L  GK V ++I ++ Y+L     
Sbjct: 668 EDRKAFELFWQMQNDG-FKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTG-- 724

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           VGNA+I+ Y K G +  A +VF+ +  +D +SW+ +I+G A NG G  ALQ    M    
Sbjct: 725 VGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQG 784

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           V  +  +F+++++ACS    +++G  +   +    ++   ++  A ++ MY + G LEEA
Sbjct: 785 VVLNKFSFVSILNACSSFSALEEGKRVHAEI-VKRKMQGDVRVGAALISMYAKCGSLEEA 843

Query: 368 EAFIREMPIEAEWSVWGALLNACRIH 393
           +        E     W A++NA   H
Sbjct: 844 QEVFDNF-TEKNVVTWNAMINAYAQH 868



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 113/405 (27%), Positives = 206/405 (50%), Gaps = 19/405 (4%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T+   L A +      +   IH   +  G   DI +  +L   +V   D+  A Q   + 
Sbjct: 286 TYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAF 345

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              DVV +  +I+ L++ G ++EA + +  +    V  N  T +SVL+ACS+  +   G+
Sbjct: 346 ADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGE 405

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IH+H     + +++ + N+++  Y RCG L     LF  MPKR+++SW  +I GYA R 
Sbjct: 406 LIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARRE 465

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
              EA+ ++++M+ ++  +P   T +++LSAC++ SA S GK +H  I  R  +  +  +
Sbjct: 466 DRGEAMKLYKQMQ-SEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDI-LRSGIKSNGHL 523

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            NA++NMY +CG +  A  VF     +D ISW+++I+G A +G    A +LF  M    +
Sbjct: 524 ANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGL 583

Query: 309 FPDDVTFIALISACSHGGLVDQG-----LILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
            PD +TF +++  C +   ++ G     LI+   +     +         +++MY R G 
Sbjct: 584 EPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLG------NALINMYIRCGS 637

Query: 364 LEEA-EAF--IREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQD 405
           L++A E F  +R   + +  ++ G   +     +  E+F +++ D
Sbjct: 638 LQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQND 682



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N ++F   L ACS     ++   +HA +++     D+ +  +L+  Y     +  A ++F
Sbjct: 788 NKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVF 847

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACS 119
           ++    +VV+W  +I+  ++ G   +A+D F  +D   +KP+ +T  S+LSAC+
Sbjct: 848 DNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACN 901


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 156/517 (30%), Positives = 275/517 (53%), Gaps = 71/517 (13%)

Query: 10  HYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN 69
            +T T  L +C+         ++H+ V++ G    + + NSLL+ Y    D+  A  +F+
Sbjct: 107 QFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFD 166

Query: 70  SVVFP-------------------------------DVVSWTTIISGLSKCGFHKEAIDM 98
            +                                  D+VSW ++I+G ++ GF  EA+  
Sbjct: 167 RMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQF 226

Query: 99  FCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNL---------------- 138
           F  I     +KP+  +L S LSAC++L     GK IH + +R +                
Sbjct: 227 FSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYA 286

Query: 139 -----------------NENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
                            ++ ++I   A+L+ Y++ G +     +F  +   +VV+WT MI
Sbjct: 287 KSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMI 346

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
            GY + G   +A+ VF+ M  ++   PN  TL  +LSA SS+++L+ GK +H+  + R  
Sbjct: 347 VGYVQNGLNNDAIEVFKTMV-SEGPRPNSFTLAAMLSASSSVTSLNHGKQIHAS-AIRSG 404

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDKISWSTVISGLAMNGCGRQALQLF 300
            ++S  VGNA+  MY K G +  A +VFN+L   +D +SW+++I  LA +G G +A++LF
Sbjct: 405 EALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELF 464

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
             M+   + PD +T++ ++SAC+HGGLV+QG   F  M  V++I P + HYAC+VD++GR
Sbjct: 465 EQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGR 524

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           AGLL+EA  F+  MP+E +   WG+LL++C++++N ++     + L+  +  + G ++ +
Sbjct: 525 AGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSAL 584

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +N ++   +W+D  KIR  ++  G+KK+ G SW+++ 
Sbjct: 585 ANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQ 621



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/416 (27%), Positives = 188/416 (45%), Gaps = 71/416 (17%)

Query: 46  FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI--- 102
           F  N++L  Y     +  AHQ+F+ +   D VSWTTII G ++ G  ++AI +F  +   
Sbjct: 42  FSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKD 101

Query: 103 DVKPNANTLVSVLSACSSLVSHKLGKAIH--------------AHSLRN-------LNEN 141
            V P   TL +VL++C++  S  +GK +H              A+SL N       L   
Sbjct: 102 KVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMA 161

Query: 142 NIILD----------NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
            ++ D          NA++  ++ CG +      F  + +R++VSW +MI G  + GF  
Sbjct: 162 KVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDN 221

Query: 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNA 251
           EA+  F  + K    +P+  +L + LSAC+++  LSFGK +H YI  R     S  VGNA
Sbjct: 222 EALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYI-VRTMFDASGAVGNA 280

Query: 252 VINM---------------------------------YVKCGDVGIAIQVFNMLAYKDKI 278
           +I+M                                 YVK GD+  A Q+FN L   D +
Sbjct: 281 LISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVV 340

Query: 279 SWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG-LILFKA 337
           +W+ +I G   NG    A+++F  M+     P+  T  A++SA S    ++ G  I   A
Sbjct: 341 AWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASA 400

Query: 338 MSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           + +   + P + +   +  MY +AG +  A      +    +   W +++ A   H
Sbjct: 401 IRSGEALSPSVGN--ALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQH 454



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 115/236 (48%), Gaps = 37/236 (15%)

Query: 142 NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFC----------- 190
           ++ L N +++ Y + G       LF +MP +   SW T++ GYA++G             
Sbjct: 9   SVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIP 68

Query: 191 --------------------KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGK 230
                               ++A+ +F +M K K   P + TL NVL++C++  +   GK
Sbjct: 69  VRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDK-VLPTQFTLTNVLASCAATGSRGIGK 127

Query: 231 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMN 290
            VHS++  +  L     V N+++NMY K GD+ +A  VF+ +  ++  SW+ +IS L MN
Sbjct: 128 KVHSFV-VKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMIS-LHMN 185

Query: 291 GCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 346
            CGR  L L    +++    D V++ ++I+ C+  G  ++ L  F ++     + P
Sbjct: 186 -CGRVDLALAQFELLSE--RDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKP 238



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 114/239 (47%), Gaps = 31/239 (12%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+S     N +T    L A S         +IHA  I  G      + N+L   Y     
Sbjct: 365 MVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGS 424

Query: 61  IFSAHQIFNSV-VFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLS 116
           I  A ++FN +    D VSWT++I  L++ G  +EAI++F     + +KP+  T V VLS
Sbjct: 425 INGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLS 484

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDN--AILDFYIRCGSLASCGYLFVK-MP-KR 172
           AC+     + G++ +   ++N+++ +  L +   ++D + R G L    Y FV+ MP + 
Sbjct: 485 ACTHGGLVEQGRS-YFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEA-YKFVENMPMEP 542

Query: 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA-------EPNE----ATLVNVLSAC 220
           +V++W +++        CK    V++ ++  K A       EPN     + L NV S+C
Sbjct: 543 DVIAWGSLLSS------CK----VYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSC 591



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 45/187 (24%)

Query: 239 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQ 298
           +  L+ S  + N ++N+Y K G    A  +FN +  K   SW+T++SG A  G   +A Q
Sbjct: 3   KLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQ 62

Query: 299 LFSL-------------------------------MIINAVFPDDVTFIALISACSHGGL 327
           +F L                               M+ + V P   T   ++++C+  G 
Sbjct: 63  VFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGS 122

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACV------VDMYGRAGLLEEAEAFIREMPIEAEWS 381
              G         V+  V ++  +ACV      ++MY + G L+ A+     M +    S
Sbjct: 123 RGIG-------KKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNT-S 174

Query: 382 VWGALLN 388
            W A+++
Sbjct: 175 SWNAMIS 181


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 151/456 (33%), Positives = 263/456 (57%), Gaps = 20/456 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +T+   LK C+         +IH  V++ G   ++++ + L+  Y     +  A +IF
Sbjct: 437 NQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIF 496

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   DVVSWT +I+G ++     EA+++F  +    +K +     S +SAC+ + +  
Sbjct: 497 RRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALD 556

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ IHA S  +   +++ + NA++  Y RCG +      F ++  ++ VSW +++ G+A
Sbjct: 557 QGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFA 616

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSV 244
           + G+ +EA+++F +M K    E N  T  + +SA ++I+ +  GK +H  I  T YD   
Sbjct: 617 QSGYFEEALNIFAQMNKAG-LEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSET 675

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
              V NA+I +Y KCG +             D ISW+++I+G + +GCG +AL+LF  M 
Sbjct: 676 E--VSNALITLYAKCGTI-------------DDISWNSMITGYSQHGCGFEALKLFEDMK 720

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
              V P+ VTF+ ++SACSH GLVD+G+  F++MS  + +VP+ +HYACVVD+ GR+GLL
Sbjct: 721 QLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLL 780

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
             A+ F+ EMPI+ +  VW  LL+AC +H+N ++ +     L+  +     T+ L+SN +
Sbjct: 781 SRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNMY 840

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           A + +W+  ++ R  ++  G+KK+ G SW+EV+ S+
Sbjct: 841 AVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSV 876



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 108/389 (27%), Positives = 198/389 (50%), Gaps = 33/389 (8%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALE-IHAHVIEYGHLHDIFIQNSLLHFYVTVK 59
           ML+    ++   F   L+ CS      + +E IHA  I  G     FI N L+  Y    
Sbjct: 154 MLTKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNG 213

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACS 119
            + SA ++F ++   D VSW  +ISGLS+ G+ +EA+ +FC I           VLSAC+
Sbjct: 214 FLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI-----------VLSACT 262

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
            +   + GK +H   L+    +   + NA++  Y R G+L+S   +F  M +R+ VS+ +
Sbjct: 263 KVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNS 322

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           +I G A++G+   A+++F++M    + +P+  T+ ++LSAC+S+ AL  GK  HSY + +
Sbjct: 323 LISGLAQQGYINRALALFKKMNLDCQ-KPDCVTVASLLSACASVGALPNGKQFHSY-AIK 380

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
             ++   +V  +++++YVKC D+  A + F      D ++               ++ Q+
Sbjct: 381 AGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLN---------------KSFQI 425

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVPQMQHYACVVDMY 358
           F+ M I  + P+  T+ +++  C+  G  D G  I  + + T ++    +   + ++DMY
Sbjct: 426 FTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVS--SVLIDMY 483

Query: 359 GRAGLLEEAEAFIREMPIEAEWSVWGALL 387
            + G L+ A    R +  E +   W A++
Sbjct: 484 AKHGKLDHALKIFRRLK-ENDVVSWTAMI 511



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 145/285 (50%), Gaps = 20/285 (7%)

Query: 51  LLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPN 107
           L+ FY+   D+  A  +F+ +    +  W  I +             +F  +   +V+ +
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFD 162

Query: 108 ANTLVSVLSACS-SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLF 166
                 VL  CS + VS +  + IHA ++ +  E++  + N ++D Y + G L+S   +F
Sbjct: 163 ERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVF 222

Query: 167 VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 226
             +  R+ VSW  MI G ++ G+ +EA+ +F ++               VLSAC+ +   
Sbjct: 223 ENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI---------------VLSACTKVEFF 267

Query: 227 SFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
            FGK +H  +  +   S    V NA++ +Y + G++  A Q+F+ ++ +D++S++++ISG
Sbjct: 268 EFGKQLHGLV-LKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISG 326

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
           LA  G   +AL LF  M ++   PD VT  +L+SAC+  G +  G
Sbjct: 327 LAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNG 371



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 118/275 (42%), Gaps = 25/275 (9%)

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
           ++DFY+  G L     +F +MP R++  W  +   +           +F+ M  TK  E 
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRM-LTKNVEF 161

Query: 209 NEATLVNVLSACSSIS-ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
           +E     VL  CS  + +  F + +H+   T      S  + N +I++Y K G +  A +
Sbjct: 162 DERIFAVVLRGCSGNAVSFRFVEQIHAKTITS-GFESSTFICNPLIDLYFKNGFLSSAKK 220

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           VF  L  +D +SW  +ISGL+ NG   +A+ LF  ++++A     V F          G 
Sbjct: 221 VFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIVLSAC--TKVEFFEF-------GK 271

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEW---SV 382
              GL+L +  S+        + Y C  +V +Y R+G L  AE     M         S+
Sbjct: 272 QLHGLVLKQGFSS--------ETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSL 323

Query: 383 WGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTF 417
              L     I+R   +F ++  D      V+V + 
Sbjct: 324 ISGLAQQGYINRALALFKKMNLDCQKPDCVTVASL 358


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 148/452 (32%), Positives = 255/452 (56%), Gaps = 26/452 (5%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L  C+ +        +H+  I+      I   N+LL  Y    D+  A ++F  +
Sbjct: 115 TIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKM 174

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
              +VVSWT++I+G ++ G+   AI +   ++   VK +   + S+L AC+   S   GK
Sbjct: 175 GERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGK 234

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H +   N   +N+ + NA++D Y +CGS+     +F  M  ++++SW TM+G      
Sbjct: 235 DVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG------ 288

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
                           E +P+  T+  +L AC+S+SAL  GK +H YI  R   S    V
Sbjct: 289 ----------------ELKPDSRTMACILPACASLSALERGKEIHGYI-LRNGYSSDRHV 331

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            NA++++YVKCG +G+A  +F+M+  KD +SW+ +I+G  M+G G +A+  F+ M    +
Sbjct: 332 ANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGI 391

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD+V+FI+++ ACSH GL++QG   F  M   + I P+++HYAC+VD+  R G L +A 
Sbjct: 392 EPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAY 451

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
            FI  +PI  + ++WGALL  CRI+ + E+ +++ + +   +  + G + L++N +A A+
Sbjct: 452 KFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAE 511

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +WE+  ++R++I + GL+K  GCSWIE+   +
Sbjct: 512 KWEEVKRMREKIGKKGLRKNPGCSWIEIKGRV 543



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 109/365 (29%), Positives = 179/365 (49%), Gaps = 51/365 (13%)

Query: 36  VIEYGHLHDIFIQNSLLHFYVTV------KDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
           V EY  + D   + S+  F + V      K   SA ++F+ +   DV+SW ++ISG    
Sbjct: 34  VSEYAKIGDF--KESICLFKIMVEKGIEGKRSESASELFDKLCDRDVISWNSMISGYVSN 91

Query: 90  GFHKEAID-----MFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
           G  +  +      M+ GIDV  +  T++SVL  C+   +  LGKA+H+ ++++  E  I 
Sbjct: 92  GLTERGLGIYKQMMYLGIDV--DLATIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRIN 149

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
             N +LD Y +CG L     +F KM +RNVVSWT+MI GY   G+   A+ + Q+MEK +
Sbjct: 150 FSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEK-E 208

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
             + +   + ++L AC+   +L  GK VH YI    +++ +  V NA+++MY KCG +  
Sbjct: 209 GVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN-NMASNLFVCNALMDMYAKCGSMEG 267

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
           A  VF+ +  KD ISW+T++  L                      PD  T   ++ AC+ 
Sbjct: 268 ANSVFSTMVVKDIISWNTMVGELK---------------------PDSRTMACILPACAS 306

Query: 325 GGLVDQ-----GLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIE-- 377
              +++     G IL    S+   +   +      VD+Y + G+L  A      +P +  
Sbjct: 307 LSALERGKEIHGYILRNGYSSDRHVANAL------VDLYVKCGVLGLARLLFDMIPSKDL 360

Query: 378 AEWSV 382
             W+V
Sbjct: 361 VSWTV 365



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 122/280 (43%), Gaps = 54/280 (19%)

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEM-EKTKEAE 207
           ++ FY  CG L     +F  M K+NV  W  M+  YA+ G  KE++ +F+ M EK  E +
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 208 PNE-------------------------------------------------ATLVNVLS 218
            +E                                                 AT+++VL 
Sbjct: 62  RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 121

Query: 219 ACSSISALSFGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK 277
            C+    LS GK VHS  I + ++  ++    N +++MY KCGD+  A++VF  +  ++ 
Sbjct: 122 GCAKSGTLSLGKAVHSLAIKSSFERRIN--FSNTLLDMYSKCGDLDGALRVFEKMGERNV 179

Query: 278 ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKA 337
           +SW+++I+G   +G    A+ L   M    V  D V   +++ AC+  G +D G  +   
Sbjct: 180 VSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDY 239

Query: 338 MSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIE 377
           +     +   +     ++DMY + G +E A +    M ++
Sbjct: 240 IKA-NNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVK 278


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 159/457 (34%), Positives = 255/457 (55%), Gaps = 8/457 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L  C        A+ IH +VI++G   D+F+ N+L++ Y    ++  A + F
Sbjct: 315 NFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAF 374

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHK 125
             +   DVVSW +II+   +      A   F  + +   +P+  TLVS+ S  +     K
Sbjct: 375 QQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCK 434

Query: 126 LGKAIHAHSLRN--LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
             +++H   +R   L E+ +++ NA++D Y + G L S   +F  +  ++V+SW T+I G
Sbjct: 435 NSRSVHGFIMRRGWLMED-VVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITG 493

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           YA+ G   EA+ V++ ME+ KE  PN+ T V++L A + + AL  G  +H  +  + +L 
Sbjct: 494 YAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRV-IKTNLH 552

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           +   V   +I++Y KCG +  A+ +F  +  +  ++W+ +IS   ++G   + L+LF  M
Sbjct: 553 LDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEM 612

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
           +   V PD VTF++L+SACSH G V++G   F+ M   Y I P ++HY C+VD+ GRAG 
Sbjct: 613 LDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLLGRAGY 671

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           LE A  FI++MP++ + S+WGALL ACRIH N E+       L      +VG + L+SN 
Sbjct: 672 LEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNI 731

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +A   +WE  +K+R   R  GLKK  G S IEVN  +
Sbjct: 732 YANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKV 768



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 112/394 (28%), Positives = 203/394 (51%), Gaps = 12/394 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YTF   LKAC      ++   IH    + G   ++F+  SL+H Y        A  +F
Sbjct: 217 DFYTFPPVLKACGTLVDGRR---IHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLF 273

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           + + F D+ SW  +ISGL + G   +A+D+   +    +K N  T+VS+L  C  L    
Sbjct: 274 DDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDIS 333

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
               IH + +++  E ++ + NA+++ Y + G+L      F +M   +VVSW ++I  Y 
Sbjct: 334 TAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYE 393

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +      A   F +M+     +P+  TLV++ S  +        + VH +I  R  L   
Sbjct: 394 QNDDPVTAHGFFVKMQ-LNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMED 452

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM-I 304
            ++GNAV++MY K G +  A +VF ++  KD ISW+T+I+G A NG   +A++++ +M  
Sbjct: 453 VVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEE 512

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
              + P+  T+++++ A +H G + QG+ I  + + T   +   +    C++D+YG+ G 
Sbjct: 513 CKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHL--DVFVATCLIDVYGKCGR 570

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
           L +A +   ++P E+    W A+++   IH + E
Sbjct: 571 LVDAMSLFYQVPQESS-VTWNAIISCHGIHGHAE 603



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 165/351 (47%), Gaps = 31/351 (8%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           +HA ++  G +  IFI   L++ Y  + D+  +   F+ +   DV +W ++IS     G 
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGH 197

Query: 92  HKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
             EAI  F  +    +++P+  T   VL AC +LV    G+ IH  + +   + N+ +  
Sbjct: 198 FHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRRIHCWAFKLGFQWNVFVAA 254

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           +++  Y R G       LF  MP R++ SW  MI G  + G   +A+ V  EM + +  +
Sbjct: 255 SLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEM-RLEGIK 313

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
            N  T+V++L  C  +  +S    +H Y+  ++ L     V NA+INMY K G++  A +
Sbjct: 314 MNFVTVVSILPVCPQLGDISTAMLIHLYV-IKHGLEFDLFVSNALINMYAKFGNLEDARK 372

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS---- 323
            F  +   D +SW+++I+    N     A   F  M +N   PD +T ++L S  +    
Sbjct: 373 AFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRD 432

Query: 324 -------HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
                  HG ++ +G ++   +               VVDMY + GLL+ A
Sbjct: 433 CKNSRSVHGFIMRRGWLMEDVVIG-----------NAVVDMYAKLGLLDSA 472



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 133/276 (48%), Gaps = 16/276 (5%)

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
             K +HA  +      +I +   +++ Y   G ++     F ++P+++V +W +MI  Y 
Sbjct: 134 FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYV 193

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G   EA+  F ++    E  P+  T   VL AC +   L  G+ +H + + +     +
Sbjct: 194 HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGT---LVDGRRIHCW-AFKLGFQWN 249

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V  ++I+MY + G  GIA  +F+ + ++D  SW+ +ISGL  NG   QAL +   M +
Sbjct: 250 VFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRL 309

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV----VDMYGRA 361
             +  + VT ++++  C   G +   +++      +Y I   ++    V    ++MY + 
Sbjct: 310 EGIKMNFVTVVSILPVCPQLGDISTAMLIH-----LYVIKHGLEFDLFVSNALINMYAKF 364

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
           G LE+A    ++M I    S W +++ A    +ND+
Sbjct: 365 GNLEDARKAFQQMFITDVVS-WNSIIAA--YEQNDD 397


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 152/461 (32%), Positives = 260/461 (56%), Gaps = 6/461 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M  C      + F+ A++AC+     +   ++H   +++G   ++F+ ++L   Y     
Sbjct: 97  MRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGA 156

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           +F A ++F  +   D VSWT +I G SK G  +EA+  F  +   +V  + + L S L A
Sbjct: 157 MFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGA 216

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLF-VKMPKRNVVS 176
           C +L + K G+++H+  ++   E++I + NA+ D Y + G + S   +F +    RNVVS
Sbjct: 217 CGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVS 276

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           +T +I GY E    ++ +SVF E+ + +  EPNE T  +++ AC++ +AL  G  +H+ +
Sbjct: 277 YTCLIDGYVETEQIEKGLSVFVELRR-QGIEPNEFTFSSLIKACANQAALEQGTQLHAQV 335

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
             + +      V + +++MY KCG +  AIQ F+ +    +I+W++++S    +G G+ A
Sbjct: 336 -MKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDA 394

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
           ++ F  M+   V P+ +TFI+L++ CSH GLV++GL  F +M   Y +VP  +HY+CV+D
Sbjct: 395 IKFFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVID 454

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGT 416
           + GRAG L+EA+ FI  MP E     W + L ACRIH + EM     + LV  +  + G 
Sbjct: 455 LLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGA 514

Query: 417 FALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
             L+SN +A   +WED   +R  +R   +KK  G SW++V 
Sbjct: 515 LVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVG 555



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/362 (30%), Positives = 197/362 (54%), Gaps = 11/362 (3%)

Query: 27  QKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGL 86
           ++  ++HA +I  G+    F+ N L++ Y    ++  A ++F+++   ++VSWT +ISGL
Sbjct: 22  RRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGL 81

Query: 87  SKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNI 143
           S+     EAI  FCG+ +    P      S + AC+SL S ++GK +H  +L+    + +
Sbjct: 82  SQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSEL 141

Query: 144 ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
            + + + D Y +CG++     +F +MP ++ VSWT MI GY++ G  +EA+  F++M   
Sbjct: 142 FVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKM-ID 200

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
           +E   ++  L + L AC ++ A  FG+ VHS +  +        VGNA+ +MY K GD+ 
Sbjct: 201 EEVTIDQHVLCSTLGACGALKACKFGRSVHSSV-VKLGFESDIFVGNALTDMYSKAGDME 259

Query: 264 IAIQVFNMLAY-KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
            A  VF + +  ++ +S++ +I G        + L +F  +    + P++ TF +LI AC
Sbjct: 260 SASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKAC 319

Query: 323 SHGGLVDQGLILF-KAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM--PIEAE 379
           ++   ++QG  L  + M   ++  P +   + +VDMYG+ GLLE A     E+  P E  
Sbjct: 320 ANQAALEQGTQLHAQVMKINFDEDPFVS--SILVDMYGKCGLLEHAIQAFDEIGDPTEIA 377

Query: 380 WS 381
           W+
Sbjct: 378 WN 379



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 92/178 (51%), Gaps = 5/178 (2%)

Query: 213 LVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 271
           L +V+   +    L  GK +H+  I   Y  +    + N ++NMY KCG++  A+++F+ 
Sbjct: 8   LAHVIQTYAKTKRLRRGKQLHALLICAGY--TPCTFLTNHLVNMYSKCGELDHALKLFDT 65

Query: 272 LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
           +  ++ +SW+ +ISGL+ N    +A++ F  M I    P    F + I AC+  G ++ G
Sbjct: 66  MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 125

Query: 332 LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
             +   ++  + I  ++   + + DMY + G + +A     EMP + E S W A+++ 
Sbjct: 126 KQM-HCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVS-WTAMIDG 181


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 151/430 (35%), Positives = 248/430 (57%), Gaps = 5/430 (1%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           E+H++++ +G   D++++++L+  Y    D+  A + F      DV   T +ISG    G
Sbjct: 400 EVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNG 459

Query: 91  FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
            + EA+++F  +    + PN  T+ SVL AC++L S KLGK +H   L+   EN   + +
Sbjct: 460 LNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKKGLENVCQVGS 519

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           +I   Y + G L      F +MP ++ V W  MI  +++ G  + A+ +F++M  T   +
Sbjct: 520 SITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQM-GTSGTK 578

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
            +  +L   LSAC++  AL +GK +H ++  R        V + +I+MY KCG + +A  
Sbjct: 579 FDSVSLSATLSACANYPALYYGKELHCFV-VRNSFISDTFVASTLIDMYSKCGKLALARS 637

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           VF+M+ +K+++SW+++I+    +G  R+ L LF  M+   + PD VTF+ ++SAC H GL
Sbjct: 638 VFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLVIMSACGHAGL 697

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           VD+G+  F+ M+  Y I  +M+H+AC+VD+YGRAG L EA   I+ MP   +   WG+LL
Sbjct: 698 VDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKSMPFTPDAGTWGSLL 757

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
            ACR+H N E+     + LV     + G + L+SN  AGA  WE   K+R  ++  G++K
Sbjct: 758 GACRLHGNVELAKLASKHLVELDPNNSGYYVLLSNVHAGAGEWESVLKVRSLMKEKGVQK 817

Query: 448 KTGCSWIEVN 457
             G SWI+VN
Sbjct: 818 IPGYSWIDVN 827



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 187/385 (48%), Gaps = 16/385 (4%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    + + YTF   +KAC   +       +H      G   D+FI +SL+  Y     
Sbjct: 168 MLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIGSSLIKLYTDNGY 227

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           I  A  +F+ +   D + W  +++G  K G    A+  F  +    VKPN+ + V +LS 
Sbjct: 228 IHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSV 287

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C++    + G  +H   +R+  E++  + N I+  Y +CG+L     +F  MP+ + V+W
Sbjct: 288 CATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTW 347

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
             +I GY + GF  EAV++F+ M  T   + +  T  + L +     +L + K VHSYI 
Sbjct: 348 NGLIAGYVQNGFTDEAVALFKAMV-TSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYI- 405

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            R+ +     + +A++++Y K GDV +A + F      D    + +ISG  +NG   +AL
Sbjct: 406 VRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEAL 465

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL-----ILFKAMSTVYEIVPQMQHYA 352
            LF  +I   + P+ +T  +++ AC+    +  G      IL K +  V ++   + +  
Sbjct: 466 NLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKKGLENVCQVGSSITY-- 523

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIE 377
               MY ++G L+ A  F R MP++
Sbjct: 524 ----MYAKSGRLDLAYQFFRRMPVK 544



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 143/303 (47%), Gaps = 5/303 (1%)

Query: 27  QKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGL 86
           Q+  +IHA V+  G    + + + +L  YV  +       +F  +     + W  +I G 
Sbjct: 93  QQVRQIHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGF 152

Query: 87  SKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNI 143
           S  G    A+  F    G +V P+  T   V+ AC  L +  L K +H  +       ++
Sbjct: 153 SMLGCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDL 212

Query: 144 ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
            + ++++  Y   G +    YLF ++P R+ + W  M+ GY + G    A+  FQEM + 
Sbjct: 213 FIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEM-RN 271

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
              +PN  + V +LS C++   +  G  +H  +  R        V N +I MY KCG++ 
Sbjct: 272 SCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLV-IRSGFESDPTVANTIITMYSKCGNLF 330

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
            A ++F+++   D ++W+ +I+G   NG   +A+ LF  M+ + V  D +TF + + +  
Sbjct: 331 DARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVL 390

Query: 324 HGG 326
             G
Sbjct: 391 KSG 393



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 133/287 (46%), Gaps = 5/287 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L AC+     +   E+H  +++ G  +   + +S+ + Y     +  A+Q F
Sbjct: 479 NCLTMASVLPACAALASLKLGKELHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFF 538

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
             +   D V W  +I   S+ G  + AID+F  +     K ++ +L + LSAC++  +  
Sbjct: 539 RRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPALY 598

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK +H   +RN   ++  + + ++D Y +CG LA    +F  M  +N VSW ++I  Y 
Sbjct: 599 YGKELHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVSWNSIIAAYG 658

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G  +E + +F EM +    +P+  T + ++SAC     +  G Y    ++  Y +   
Sbjct: 659 NHGRPRECLDLFHEMVEAG-IQPDHVTFLVIMSACGHAGLVDEGIYYFRCMTEEYGICAR 717

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDKISWSTVISGLAMNG 291
                 ++++Y + G +  A      + +  D  +W +++    ++G
Sbjct: 718 MEHFACMVDLYGRAGRLHEAFDTIKSMPFTPDAGTWGSLLGACRLHG 764



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 129/270 (47%), Gaps = 7/270 (2%)

Query: 119 SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWT 178
           +SLV  ++ + IHA  L      ++ L + +L  Y+ C S    G LF ++     + W 
Sbjct: 88  ASLVKQQV-RQIHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWN 146

Query: 179 TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST 238
            +I G++  G    A+  F  M  +  A P++ T   V+ AC  ++ +   K VH  ++ 
Sbjct: 147 WLIRGFSMLGCFDFALMFFFRMLGSNVA-PDKYTFPYVIKACGGLNNVPLCKMVHE-LAR 204

Query: 239 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQ 298
                +   +G+++I +Y   G +  A  +F+ L  +D I W+ +++G   NG    AL 
Sbjct: 205 SMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALG 264

Query: 299 LFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFK-AMSTVYEIVPQMQHYACVVDM 357
            F  M  + V P+ V+F+ L+S C+  G+V  G+ L    + + +E  P + +   ++ M
Sbjct: 265 TFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVAN--TIITM 322

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           Y + G L +A      MP + +   W  L+
Sbjct: 323 YSKCGNLFDARKIFDIMP-QTDTVTWNGLI 351



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 14/148 (9%)

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           +G+ ++ MYV C        +F  L     + W+ +I G +M GC   AL  F  M+ + 
Sbjct: 113 LGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSMLGCFDFALMFFFRMLGSN 172

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY------ACVVDMYGRA 361
           V PD  TF  +I AC  GGL +  L        V+E+   M  +      + ++ +Y   
Sbjct: 173 VAPDKYTFPYVIKAC--GGLNNVPLC-----KMVHELARSMGFHMDLFIGSSLIKLYTDN 225

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNA 389
           G + +A+    E+P+  +  +W  +LN 
Sbjct: 226 GYIHDAKYLFDELPVR-DCILWNVMLNG 252


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 155/423 (36%), Positives = 236/423 (55%), Gaps = 15/423 (3%)

Query: 42  LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG 101
           + D+   N+++  Y  V D+  A ++FN     DV +WT ++SG  + G   EA   F  
Sbjct: 229 VRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDE 288

Query: 102 IDVKPNANTLVSVLSACSSLVSHK----LGKAIHAHSLRNLNENNIILDNAILDFYIRCG 157
           + VK      +S  +  +  V +K     G+   A   RN++  N ++       Y + G
Sbjct: 289 MPVKNE----ISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITG-----YGQNG 339

Query: 158 SLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVL 217
            +A    LF  MP+R+ VSW  +I GYA+ G  +EA+++F EM++  E+  N +T    L
Sbjct: 340 GIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESS-NRSTFSCAL 398

Query: 218 SACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK 277
           S C+ I+AL  GK VH  +  +        VGNA++ MY KCG    A  VF  +  KD 
Sbjct: 399 STCADIAALELGKQVHGQV-VKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDV 457

Query: 278 ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKA 337
           +SW+T+I+G A +G GRQAL LF  M    V PD++T + ++SACSH GL+D+G   F +
Sbjct: 458 VSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYS 517

Query: 338 MSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
           M   Y + P  +HY C++D+ GRAG LEEAE  +R MP +   + WGALL A RIH N E
Sbjct: 518 MDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTE 577

Query: 398 MFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           + ++  + +   +  + G + L+SN +A + RW D  K+R ++R  G++K TG SW+EV 
Sbjct: 578 LGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQ 637

Query: 458 PSI 460
             I
Sbjct: 638 NKI 640



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 134/268 (50%), Gaps = 5/268 (1%)

Query: 28  KALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS 87
           K + I   + E     +I   N+++  Y     I  A ++F+ +   D VSW  IISG +
Sbjct: 308 KKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYA 367

Query: 88  KCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
           + G ++EA++MF  +       N +T    LS C+ + + +LGK +H   ++   E    
Sbjct: 368 QNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCF 427

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           + NA+L  Y +CGS      +F  + +++VVSW TMI GYA  GF ++A+ +F+ M+K  
Sbjct: 428 VGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAG 487

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
             +P+E T+V VLSACS    +  G      +   Y++  ++     +I++  + G +  
Sbjct: 488 -VKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEE 546

Query: 265 AIQVF-NMLAYKDKISWSTVISGLAMNG 291
           A  +  NM       SW  ++    ++G
Sbjct: 547 AENLMRNMPFDPGAASWGALLGASRIHG 574



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 148/298 (49%), Gaps = 23/298 (7%)

Query: 43  HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI 102
            D+F  N +L  YV  + +  AH++F+ +   DVVSW  ++SG ++ GF  EA ++F  +
Sbjct: 106 RDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKM 165

Query: 103 DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNEN-NIILDNAILDFYIRCGSLAS 161
              P+ N+ +S     ++ V +  G+   A  L     N  +I  N ++  Y++   L  
Sbjct: 166 ---PHRNS-ISWNGLLAAYVHN--GRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGD 219

Query: 162 CGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221
              LF +MP R+V+SW TMI GYA+ G   +A  +F           NE+ + +V +  +
Sbjct: 220 ARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLF-----------NESPIRDVFTWTA 268

Query: 222 SISALSFGKYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
            +S       V        ++ V N +  NA++  YV+   + IA ++F  +  ++  SW
Sbjct: 269 MVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSW 328

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM 338
           +T+I+G   NG   QA +LF +M       D V++ A+IS  +  G  ++ L +F  M
Sbjct: 329 NTMITGYGQNGGIAQARKLFDMMPQR----DCVSWAAIISGYAQNGHYEEALNMFVEM 382



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 127/275 (46%), Gaps = 27/275 (9%)

Query: 74  PDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNA--NTLVS--VLSACSSLVSHKLGKA 129
           PD+V+W   IS   + G    A+ +F  +  + +   N ++S  + +A  SL      K 
Sbjct: 44  PDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDK- 102

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
                   + E ++   N +L  Y+R   L     LF  MPK++VVSW  M+ GYA+ GF
Sbjct: 103 --------MPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGF 154

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
             EA  VF +M        N  +   +L+A      L   + +    S    +S + L+G
Sbjct: 155 VDEAREVFNKM-----PHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMG 209

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
                 YVK   +G A Q+F+ +  +D ISW+T+ISG A  G   QA +LF+   I  VF
Sbjct: 210 G-----YVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVF 264

Query: 310 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 344
               T+ A++S     G+VD+    F  M    EI
Sbjct: 265 ----TWTAMVSGYVQNGMVDEARKYFDEMPVKNEI 295



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 5/181 (2%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S N  TF+ AL  C+     +   ++H  V++ G     F+ N+LL  Y        A+ 
Sbjct: 388 SSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEAND 447

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVS 123
           +F  +   DVVSW T+I+G ++ GF ++A+ +F  +    VKP+  T+V VLSACS    
Sbjct: 448 VFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGL 507

Query: 124 HKLGKAIHAHSLRNLNENNIILD-NAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMI 181
              G        R+ N          ++D   R G L     L   MP      SW  ++
Sbjct: 508 IDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALL 567

Query: 182 G 182
           G
Sbjct: 568 G 568



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 98/211 (46%), Gaps = 19/211 (9%)

Query: 167 VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 226
           VK    ++V+W   I  +   G C  A+ VF  M +      N      ++S     +  
Sbjct: 39  VKFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNA-----MISGYLRNAKF 93

Query: 227 SFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
           S  + +   +  R DL       N ++  YV+   +G A ++F+++  KD +SW+ ++SG
Sbjct: 94  SLARDLFDKMPER-DL----FSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSG 148

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 346
            A NG   +A ++F+ M       + +++  L++A  H G + +   LF++ S  +E++ 
Sbjct: 149 YAQNGFVDEAREVFNKM----PHRNSISWNGLLAAYVHNGRLKEARRLFESQSN-WELIS 203

Query: 347 QMQHYACVVDMYGRAGLLEEAEAFIREMPIE 377
               + C++  Y +  +L +A      MP+ 
Sbjct: 204 ----WNCLMGGYVKRNMLGDARQLFDRMPVR 230


>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 167/459 (36%), Positives = 259/459 (56%), Gaps = 19/459 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLL--HFYVTVKDIFSAHQ 66
           +++T+   LKACS     +    IHA V + G   DIF+ NSL+  +F   +  + +A +
Sbjct: 114 DNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARK 173

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKL 126
           +F  +   D VSW ++I GL K G   EA  +F   D  P  +T VS  +     V  K 
Sbjct: 174 VFEVMAERDTVSWNSMIGGLVKVGELGEARRLF---DEMPERDT-VSWNTILDGYV--KA 227

Query: 127 GKAIHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           G+   A  L   +   N++  + ++  Y + G +     LF KMP +N+V WT MI GYA
Sbjct: 228 GEMNAAFELFEKMPARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYA 287

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           E+G  K+A++++ +ME+    + ++ T++++LSAC+    L  GK VH+ I  R     S
Sbjct: 288 EKGLAKDAINLYNQMEEAG-LKFDDGTVISILSACAVSGLLGLGKRVHASIE-RTRFKCS 345

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V NA+I+MY KCG +  A+ +F+ +  KD +SW+ +I GLAM+G G +ALQLFS M  
Sbjct: 346 TPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKG 405

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
               PD VTF+ ++ AC+H G VD+GL  F AM   Y + P+++HY C+VD+ GR G L+
Sbjct: 406 EGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLK 465

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHR----NDEMFDRIRQDLVNKKGVSVGTFALMS 421
           EA   +  MP+E    +WG LL ACR+H      +E+FDR    LV  +    G  +++S
Sbjct: 466 EAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDR----LVKSELSDSGNLSMLS 521

Query: 422 NTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           N +A A  W++   IR  ++   ++K +G S IEV+  +
Sbjct: 522 NIYAAAGDWDNFANIRLRMKSTSIQKPSGGSSIEVDDEV 560



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 100/398 (25%), Positives = 186/398 (46%), Gaps = 24/398 (6%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           +IHA V++     + F+   L+  +   + +  A  +FN +  PDV+ + T+I    +  
Sbjct: 35  QIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNS 94

Query: 91  FHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
               A  +F  +    V  +  T   +L ACS  V  ++ + IHA   +     +I + N
Sbjct: 95  EPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPN 154

Query: 148 AILDFYIRCG--SLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
           +++D Y +CG   +A+   +F  M +R+ VSW +MIGG  + G   EA  +F EM     
Sbjct: 155 SLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGELGEARRLFDEM----- 209

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
            E +  +   +L        ++    +   +  R  +S S +V       Y K GD+ +A
Sbjct: 210 PERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMVLG-----YSKAGDMDMA 264

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
             +F+ +  K+ + W+ +ISG A  G  + A+ L++ M    +  DD T I+++SAC+  
Sbjct: 265 RILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACAVS 324

Query: 326 GLVDQGLILFKAMS-TVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 384
           GL+  G  +  ++  T ++    + +   ++DMY + G LE A +    M +  +   W 
Sbjct: 325 GLLGLGKRVHASIERTRFKCSTPVSN--ALIDMYAKCGSLENALSIFHGM-VRKDVVSWN 381

Query: 385 ALLNACRIHRNDE----MFDRIR-QDLVNKKGVSVGTF 417
           A++    +H + E    +F R++ +  V  K   VG  
Sbjct: 382 AIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVL 419



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 128/276 (46%), Gaps = 20/276 (7%)

Query: 112 VSVLSACSSLVSHKLGKAIHAHSLR-NLNENNIILDNAILDFYIRCGSLASCGYLFVKMP 170
           +S L  CSSL      K IHA  L+ NL+  + +    I  F + C  +     +F ++ 
Sbjct: 21  ISDLHRCSSL---NQVKQIHAQVLKANLHRESFVGQKLIAAFSL-CRQMTLAVNVFNQIQ 76

Query: 171 KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGK 230
             +V+ + T+I  +        A SVF EM+ +     N  T   +L ACS    +   +
Sbjct: 77  DPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADN-FTYPFLLKACSGKVWVRVVE 135

Query: 231 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI--QVFNMLAYKDKISWSTVISGLA 288
            +H+ +  +    +   V N++I+ Y KCG  G+A   +VF ++A +D +SW+++I GL 
Sbjct: 136 MIHAQVE-KMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLV 194

Query: 289 MNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQM 348
             G   +A +LF  M       D V++  ++      G ++    LF+ M         +
Sbjct: 195 KVGELGEARRLFDEMPER----DTVSWNTILDGYVKAGEMNAAFELFEKMPA-----RNV 245

Query: 349 QHYACVVDMYGRAGLLEEAEAFIREMPIE--AEWSV 382
             ++ +V  Y +AG ++ A     +MP++    W++
Sbjct: 246 VSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTI 281


>gi|255542634|ref|XP_002512380.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548341|gb|EEF49832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 736

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 148/423 (34%), Positives = 255/423 (60%), Gaps = 9/423 (2%)

Query: 43  HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF--- 99
            D    N+++  ++   D+ +  Q+F+ ++  +V++WT IISGLS+   +++++ +F   
Sbjct: 21  RDTVSWNTMVSGFLRNGDLDTGRQVFDEMLERNVITWTAIISGLSQNEMYEDSLGLFVQM 80

Query: 100 -CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGS 158
            CG+ ++PN  T +S L+ACS L + + G+ IH    +   ++N+ +++A++D Y +CGS
Sbjct: 81  RCGL-IEPNFLTYLSSLTACSGLQALEKGRQIHGLVWKLGIQSNLCIESALMDLYSKCGS 139

Query: 159 LASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT-KEAEPNEATLVNVL 217
           L     +F    + + VS T ++ G+ + GF +EA+  F +M     E +PN  + V  L
Sbjct: 140 LEDARRVFESAVELDEVSMTVILVGFTQNGFEEEAIEFFVKMVNIGTEVDPNMVSAV--L 197

Query: 218 SACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK 277
            AC   ++L  GK +HS +  R  L  +  VGN +INMY KCG++  +I+VFN L  ++ 
Sbjct: 198 GACGVDTSLGLGKQIHSLVIKR-SLGSNPFVGNGLINMYSKCGELQESIKVFNGLTCRNS 256

Query: 278 ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKA 337
           +SW+++I+  A +G G +AL+L+  MI     P D+TF++L+ ACSH GLVD+G+   K+
Sbjct: 257 VSWNSMIAAFARHGDGFRALRLYEEMIQEGAVPTDLTFLSLLHACSHVGLVDKGMKFLKS 316

Query: 338 MSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
           M+ VY I P+ +HYACVVDM GRAGLL EA++ I  + I+ +  +W ALL AC I  + E
Sbjct: 317 MTKVYGISPRAEHYACVVDMLGRAGLLNEAKSLIERLSIKPDVLIWQALLGACSIRGDTE 376

Query: 398 MFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +     + L+  +      + L++N ++   RW++  +    ++ MG+ K+TG SWIE+ 
Sbjct: 377 IGKYAAEQLLLLEPKKPAPYVLLANIYSSKGRWDERARTIKRMKEMGVAKETGISWIEIE 436

Query: 458 PSI 460
             +
Sbjct: 437 KKV 439



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 143/289 (49%), Gaps = 9/289 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T+  +L ACS     +K  +IH  V + G   ++ I+++L+  Y     +  A ++F
Sbjct: 88  NFLTYLSSLTACSGLQALEKGRQIHGLVWKLGIQSNLCIESALMDLYSKCGSLEDARRVF 147

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNANTLVSVLSACSSLVS 123
            S V  D VS T I+ G ++ GF +EAI+ F      G +V P  N + +VL AC    S
Sbjct: 148 ESAVELDEVSMTVILVGFTQNGFEEEAIEFFVKMVNIGTEVDP--NMVSAVLGACGVDTS 205

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
             LGK IH+  ++    +N  + N +++ Y +CG L     +F  +  RN VSW +MI  
Sbjct: 206 LGLGKQIHSLVIKRSLGSNPFVGNGLINMYSKCGELQESIKVFNGLTCRNSVSWNSMIAA 265

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           +A  G    A+ +++EM + + A P + T +++L ACS +  +  G      ++  Y +S
Sbjct: 266 FARHGDGFRALRLYEEMIQ-EGAVPTDLTFLSLLHACSHVGLVDKGMKFLKSMTKVYGIS 324

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DKISWSTVISGLAMNG 291
                   V++M  + G +  A  +   L+ K D + W  ++   ++ G
Sbjct: 325 PRAEHYACVVDMLGRAGLLNEAKSLIERLSIKPDVLIWQALLGACSIRG 373



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 130/296 (43%), Gaps = 45/296 (15%)

Query: 153 YIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEM------------ 200
           Y +CG  +    +F  MP R+ VSW TM+ G+   G       VF EM            
Sbjct: 2   YFKCGVFSDAVKVFDDMPTRDTVSWNTMVSGFLRNGDLDTGRQVFDEMLERNVITWTAII 61

Query: 201 ------EKTKEA------------EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
                 E  +++            EPN  T ++ L+ACS + AL  G+ +H  +   + L
Sbjct: 62  SGLSQNEMYEDSLGLFVQMRCGLIEPNFLTYLSSLTACSGLQALEKGRQIHGLV---WKL 118

Query: 243 SV-SNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
            + SNL + +A++++Y KCG +  A +VF      D++S + ++ G   NG   +A++ F
Sbjct: 119 GIQSNLCIESALMDLYSKCGSLEDARRVFESAVELDEVSMTVILVGFTQNGFEEEAIEFF 178

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV----VD 356
             M+      D     A++ AC     VD  L L K + ++  I   +     V    ++
Sbjct: 179 VKMVNIGTEVDPNMVSAVLGACG----VDTSLGLGKQIHSLV-IKRSLGSNPFVGNGLIN 233

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           MY + G L+E+      +      S W +++ A   H +     R+ ++++ +  V
Sbjct: 234 MYSKCGELQESIKVFNGLTCRNSVS-WNSMIAAFARHGDGFRALRLYEEMIQEGAV 288



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 255 MYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVT 314
           MY KCG    A++VF+ +  +D +SW+T++SG   NG      Q+F  M+   V    +T
Sbjct: 1   MYFKCGVFSDAVKVFDDMPTRDTVSWNTMVSGFLRNGDLDTGRQVFDEMLERNV----IT 56

Query: 315 FIALISACSHGGLVDQGLILFKAM 338
           + A+IS  S   + +  L LF  M
Sbjct: 57  WTAIISGLSQNEMYEDSLGLFVQM 80


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 153/437 (35%), Positives = 263/437 (60%), Gaps = 9/437 (2%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC- 89
           ++HAH+I  G+     +   LL+       I    QIF +V  PD   +T++I   SK  
Sbjct: 30  QVHAHIIVSGYGRSRSLLTKLLNLACAAGSISYTRQIFLAVPNPDSFLFTSLIKSTSKSH 89

Query: 90  GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
            F   ++  +  +   +V P+  T  SV+ +C+ L + K G+ +H H L +    ++ + 
Sbjct: 90  NFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVYVQ 149

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
            A++  Y +CG L +   +F K+ +R++V+W +MI GY + GF KEA+ +F  M++T   
Sbjct: 150 AALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETG-V 208

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIA 265
           EP+ AT V+VLSAC+ + A S G +VH YI     DL+V  ++G ++INMY++CG+V  A
Sbjct: 209 EPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNV--VLGTSLINMYIRCGNVSKA 266

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
            +VF+ +  ++ ++W+ +ISG   NG G QA++LF  M  N +FP+ +TF+A++SAC+H 
Sbjct: 267 REVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSACAHA 326

Query: 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIR-EMPIEAEWSVWG 384
           GLV++G  LF ++   Y +VP ++H  C+VDM GRAGLL+EA  FI+ E+P     ++  
Sbjct: 327 GLVNEGRRLFASIREEYHLVPGVEHNVCLVDMLGRAGLLDEAYNFIKEEIPENPAPAILT 386

Query: 385 ALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444
           A+L AC++H+N ++  ++ + L+  +  +   + ++SN +A A R +    +R+ + R  
Sbjct: 387 AMLGACKMHKNFDLGAQVAEHLLAAEPENPAHYVILSNIYALAGRMDQVEIVRNNMIRKC 446

Query: 445 LKKKTGCSWIEVNPSIF 461
           LKK+ G S +EV+   +
Sbjct: 447 LKKQVGYSTVEVDQKTY 463



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 83/239 (34%), Positives = 141/239 (58%), Gaps = 4/239 (1%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S ++YTFT  +K+C+     +    +H HV+ +G   D+++Q +L+  Y    D+ +A +
Sbjct: 108 SPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCGDLINARK 167

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVS 123
           +F+ +    +V+W ++ISG  + GF KEAI +F  +    V+P++ T VSVLSAC+ L +
Sbjct: 168 VFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGA 227

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
             LG  +H + + N  + N++L  ++++ YIRCG+++    +F  M +RNVV+WT MI G
Sbjct: 228 FSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISG 287

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
           Y   G+  +AV +F EM +     PN  T V VLSAC+    ++ G+ + + I   Y L
Sbjct: 288 YGTNGYGSQAVELFHEMRRNG-LFPNSITFVAVLSACAHAGLVNEGRRLFASIREEYHL 345


>gi|356571125|ref|XP_003553731.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g05240-like [Glycine max]
          Length = 552

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 161/463 (34%), Positives = 261/463 (56%), Gaps = 17/463 (3%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S +H+TF   LKAC           IH  +++ G   D +    LLH YV+  D+ S  +
Sbjct: 90  SPDHFTFPFVLKACCAIADQDCGKCIHCCIVKSGFEADAYTATGLLHMYVSCADMKSGLK 149

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSL 121
           +F+++   +VV+WT +I+G        EA+ +F     CG  V+PN  T+V+ L  C+  
Sbjct: 150 VFDNIPIWNVVAWTCLIAGYVNNNQPYEALKVFKDMSHCG--VEPNEITMVNALIXCARS 207

Query: 122 VSHKLGKAIHAH-------SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV 174
                G+ +H H          + + +NIIL  AIL+ Y +CGS      LF KMP+RN+
Sbjct: 208 RDFDTGQWVHQHIRKAGYDPFMSTSNSNIILATAILEMYAKCGSFKIARDLFNKMPQRNI 267

Query: 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
           VSW +MI  Y +    KEA+ +F +M  T    P++AT ++VLS C+ + AL+ G+ VH+
Sbjct: 268 VSWNSMINAYNQYERHKEALDLFFDMW-TSGIYPDKATFLSVLSVCAHLCALALGQTVHA 326

Query: 235 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
           Y+  +  +     +  A+++MY K G +G A ++F+ L  +D + W+++I+GLAM+G G 
Sbjct: 327 YL-XKTGIGTDISLATALLDMYAKTGGLGSAQKIFSSLQKRDVVMWTSMINGLAMHGDGN 385

Query: 295 QALQLFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
           +AL +F  M  ++ + PD +T+I ++ ACSH GLV++    F+ M+ +Y IVP  +HY C
Sbjct: 386 EALGMFQTMHEDSSLVPDHITYIGVLFACSHVGLVEEAKKHFRLMTEMYSIVPGREHYGC 445

Query: 354 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVS 413
           +VD+  R+G   EAE  +  M I+   S+ GALL  C+IH N  + +++++ L   +   
Sbjct: 446 MVDLLSRSGHFGEAERLMETMAIQPNISIXGALLYGCQIHENLXVANQVKERLTELESCQ 505

Query: 414 VGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
            G   L+SN +A A RWED N  R  ++   + K  G S +E+
Sbjct: 506 SGAHVLLSNIYAKAGRWEDVNGTRKVMKHKRITKIIGHSSVEM 548



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 170/361 (47%), Gaps = 20/361 (5%)

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV-----KPNANTLVSV 114
           DI +A  +F  +  P V  W ++I G      H   + M     +      P+  T   V
Sbjct: 42  DINNADLVFRQIDAPSVYIWNSMIRGF--VNNHNPRMSMLLYRQLIENGYSPDHFTFPFV 99

Query: 115 LSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV 174
           L AC ++     GK IH   +++  E +      +L  Y+ C  + S   +F  +P  NV
Sbjct: 100 LKACCAIADQDCGKCIHCCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPIWNV 159

Query: 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
           V+WT +I GY       EA+ VF++M      EPNE T+VN L  C+       G++VH 
Sbjct: 160 VAWTCLIAGYVNNNQPYEALKVFKDMSHCG-VEPNEITMVNALIXCARSRDFDTGQWVHQ 218

Query: 235 YI-STRYD--LSVSN---LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
           +I    YD  +S SN   ++  A++ MY KCG   IA  +FN +  ++ +SW+++I+   
Sbjct: 219 HIRKAGYDPFMSTSNSNIILATAILEMYAKCGSFKIARDLFNKMPQRNIVSWNSMINAYN 278

Query: 289 MNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQM 348
                ++AL LF  M  + ++PD  TF++++S C+H   +  G  +   +     I   +
Sbjct: 279 QYERHKEALDLFFDMWTSGIYPDKATFLSVLSVCAHLCALALGQTVHAYLXKT-GIGTDI 337

Query: 349 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDRIRQ 404
                ++DMY + G L  A+     +  + +  +W +++N   +H +      MF  + +
Sbjct: 338 SLATALLDMYAKTGGLGSAQKIFSSLQ-KRDVVMWTSMINGLAMHGDGNEALGMFQTMHE 396

Query: 405 D 405
           D
Sbjct: 397 D 397


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  285 bits (728), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 150/481 (31%), Positives = 265/481 (55%), Gaps = 26/481 (5%)

Query: 3   SCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIF 62
           + P S    +   ALK+C+          +HA  I  G   D F  N+LL+ Y  V   +
Sbjct: 43  AAPRSSVPASLPAALKSCAALGLSALGASLHALAIRSGAFADRFTANALLNLYCKVPCSY 102

Query: 63  -------------------SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDM---FC 100
                              S  ++F+ ++  DVVSW T++ G ++ G H EA+      C
Sbjct: 103 LDSTGVAIVDVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMC 162

Query: 101 GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLA 160
               +P++ TL +VL   +     K G  +H  + RN  ++++ + ++++D Y  C    
Sbjct: 163 REGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTD 222

Query: 161 SCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
               +F  +P R+ + W +++ G A+ G  +EA+ +F+ M +     P   T  +++  C
Sbjct: 223 YSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAG-VRPVPVTFSSLIPVC 281

Query: 221 SSISALSFGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS 279
            ++++L FGK +H+Y I   ++ +V   + +++I+MY KCG++ IA  +F+ ++  D +S
Sbjct: 282 GNLASLRFGKQLHAYVICGGFEDNV--FISSSLIDMYCKCGEISIAHCIFDKMSSPDVVS 339

Query: 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMS 339
           W+ +I G A++G  R+AL LF  M +    P+ +TF+A+++ACSH GLVD+G   FK+MS
Sbjct: 340 WTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMS 399

Query: 340 TVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMF 399
             Y IVP ++H+A + D  GRAG L+EA  FI +M I+   SVW  LL ACR+H+N  + 
Sbjct: 400 NHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLA 459

Query: 400 DRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPS 459
           + + + ++  +  S+G+  ++SN ++ + RW +   +R+ +R+ G+KK   CSWIEV   
Sbjct: 460 EEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHLRESMRKKGMKKDPACSWIEVKSK 519

Query: 460 I 460
           +
Sbjct: 520 L 520



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 96/235 (40%), Gaps = 25/235 (10%)

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN-EATLVNVLSACSSISALSFGKYVHSY 235
           W   I   A  G   +AVS+F  M  +     +  A+L   L +C+++   + G  +H+ 
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHA- 74

Query: 236 ISTRYDLSVSNLVGNAVINMYVKC-----GDVGIAI--------------QVFNMLAYKD 276
           ++ R          NA++N+Y K         G+AI              +VF+ +  +D
Sbjct: 75  LAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERD 134

Query: 277 KISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFK 336
            +SW+T++ G A  G   +AL     M      PD  T   ++   +    V +GL +  
Sbjct: 135 VVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHG 194

Query: 337 -AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 390
            A    ++    +   + ++DMY      + +      +P+  +  +W +LL  C
Sbjct: 195 FAFRNGFD--SDVFVGSSLIDMYANCTRTDYSVKVFDNLPVR-DHILWNSLLAGC 246


>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Vitis vinifera]
          Length = 464

 Score =  285 bits (728), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 158/466 (33%), Positives = 258/466 (55%), Gaps = 49/466 (10%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+    S   +TF+  +KACSL         +H H+ +YG    +F+Q +L+ FY     
Sbjct: 1   MVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGK 60

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSS 120
           I  A ++F+ +   DV +WTT+IS  ++ G    A  +F  + V+  A+           
Sbjct: 61  IVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASW---------- 110

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
                                     NA++D Y R  ++ S   LF +MP R+++SWTTM
Sbjct: 111 --------------------------NAMIDGYSRLRNVESAELLFSQMPNRDIISWTTM 144

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTR 239
           I  Y++    +EA++VF EM+ T   +P+E T+  ++SAC+ + AL  GK +H Y +   
Sbjct: 145 IACYSQNKQFREALAVFNEMQ-TNGIDPDEVTMATIISACAHLGALDLGKEIHLYAMEMG 203

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
           +DL V   +G+A+I+MY KCG +  ++ VF  L  K+   W+++I GLA++G   +AL +
Sbjct: 204 FDLDV--YIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALAM 261

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
           FS M    + P+ VTFI+++ AC+H GLV++G   F +MS  + I P+++HY C+VD+ G
Sbjct: 262 FSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDFSIPPEIEHYGCMVDLLG 321

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV----SVG 415
           +AGLLE+A   +R M +E    +WGALL  C++HRN     +I Q  VN+  V    + G
Sbjct: 322 KAGLLEDALELVRSMRMEPNSVIWGALLGGCKLHRN----LKIAQVAVNESKVLEPNNSG 377

Query: 416 TFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKT-GCSWIEVNPSI 460
            + L+ N +A  +RW +   IR  ++ +G++K + G SWIE++  I
Sbjct: 378 YYTLLVNMYAEVNRWSEVANIRATMKELGVEKTSPGSSWIEMDRKI 423


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  285 bits (728), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 149/452 (32%), Positives = 255/452 (56%), Gaps = 26/452 (5%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L  C+ +        +H+  I+      I   N+LL  Y    D+  A ++F  +
Sbjct: 253 TIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKM 312

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
              +VVSWT++I+G ++ G    AI +   ++   VK +   + S+L AC+   S   GK
Sbjct: 313 GERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGK 372

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H +   N  E+N+ + NA++D Y +CGS+ +   +F  M  ++++SW TMIG      
Sbjct: 373 DVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIG------ 426

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
                           E +P+  T+  VL AC+S+SAL  GK +H YI  R   S    V
Sbjct: 427 ----------------ELKPDSRTMACVLPACASLSALERGKEIHGYI-LRNGYSSDRHV 469

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            NA++++YVKCG +G+A  +F+M+  KD +SW+ +I+G  M+G G +A+  F+ M    +
Sbjct: 470 ANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGI 529

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD+V+FI+++ ACSH GL++QG   F  M   + I P+++HYAC+VD+  R G L +A 
Sbjct: 530 EPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAY 589

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
            F+  +PI  + ++WGALL  CR + + E+ +++ + +   +  + G + L++N +A A+
Sbjct: 590 EFMETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAE 649

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +WE+  ++R++I + GL+K  GCSWIE+   +
Sbjct: 650 KWEEVKRLREKIGKQGLRKNPGCSWIEIKGKV 681



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 110/365 (30%), Positives = 178/365 (48%), Gaps = 51/365 (13%)

Query: 36  VIEYGHLHDIFIQNSLLHFYVTV------KDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
           V EY  + D   + S+  F + V      K   SA ++F+ +   DV+SW ++ISG    
Sbjct: 172 VSEYAKIGDF--KESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSN 229

Query: 90  GFHKEAID-----MFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
           G  +  +      M+ GIDV  +  T++SVL  C++  +  LGKA+H+ ++++  E  I 
Sbjct: 230 GLTERGLGIYKQMMYLGIDV--DLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRIN 287

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
             N +LD Y +CG L     +F KM +RNVVSWT+MI GY   G    A+ + Q+MEK +
Sbjct: 288 FSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEK-E 346

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
             + +   + ++L AC+   +L  GK VH YI    ++  +  V NA+++MY KCG +  
Sbjct: 347 GVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN-NMESNLFVCNALMDMYAKCGSMEA 405

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
           A  VF+ +  KD ISW+T+I  L                      PD  T   ++ AC+ 
Sbjct: 406 ANSVFSTMVVKDIISWNTMIGELK---------------------PDSRTMACVLPACAS 444

Query: 325 GGLVDQ-----GLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIE-- 377
              +++     G IL    S+   +   +      VD+Y + G+L  A      +P +  
Sbjct: 445 LSALERGKEIHGYILRNGYSSDRHVANAL------VDLYVKCGVLGLARLLFDMIPSKDL 498

Query: 378 AEWSV 382
             W+V
Sbjct: 499 VSWTV 503



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 146/329 (44%), Gaps = 74/329 (22%)

Query: 110 TLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAI----LDFYIRCGSLASCGYL 165
           T  SVL  C+ L S   GK +H+     +  N++ +D A+    + FY  CG L     +
Sbjct: 101 TYGSVLQLCAGLKSFTDGKKVHSI----IKSNSVGVDGALGLKLVSFYATCGDLKEGRRV 156

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEM-EKTKEAEPNE-------------- 210
           F  M K+NV  W  M+  YA+ G  KE++ +F+ M EK  E +  E              
Sbjct: 157 FDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDV 216

Query: 211 -----------------------------------ATLVNVLSACSSISALSFGKYVHSY 235
                                              AT+++VL  C++   LS GK VHS 
Sbjct: 217 ISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSL 276

Query: 236 -ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
            I + ++  ++    N +++MY KCGD+  A++VF  +  ++ +SW+++I+G   +G   
Sbjct: 277 AIKSSFERRIN--FSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSD 334

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP----QMQH 350
            A++L   M    V  D V   +++ AC+  G +D G         V++ +     +   
Sbjct: 335 GAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNG-------KDVHDYIKANNMESNL 387

Query: 351 YAC--VVDMYGRAGLLEEAEAFIREMPIE 377
           + C  ++DMY + G +E A +    M ++
Sbjct: 388 FVCNALMDMYAKCGSMEAANSVFSTMVVK 416



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 113/271 (41%), Gaps = 59/271 (21%)

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV- 262
           +++E    T  +VL  C+ + + + GK VHS I +   + V   +G  +++ Y  CGD+ 
Sbjct: 93  QKSELETKTYGSVLQLCAGLKSFTDGKKVHSIIKSN-SVGVDGALGLKLVSFYATCGDLK 151

Query: 263 -------------------------------------------GI-------AIQVFNML 272
                                                      GI       A ++F+ L
Sbjct: 152 EGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKL 211

Query: 273 AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL 332
             +D ISW+++ISG   NG   + L ++  M+   +  D  T I+++  C++ G +  G 
Sbjct: 212 CDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGK 271

Query: 333 ILFK-AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-C 390
            +   A+ + +E   ++     ++DMY + G L+ A     +M  E     W +++    
Sbjct: 272 AVHSLAIKSSFE--RRINFSNTLLDMYSKCGDLDGALRVFEKMG-ERNVVSWTSMIAGYT 328

Query: 391 RIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           R  R+D     ++Q  + K+GV +   A+ S
Sbjct: 329 RDGRSDGAIKLLQQ--MEKEGVKLDVVAITS 357


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  285 bits (728), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 144/449 (32%), Positives = 253/449 (56%), Gaps = 5/449 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L  C+ +      + IH HV+++G   D+F+ N+L++ Y     +  A  +F+ +
Sbjct: 224 TVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQM 283

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
              D+VSW +II+   +      A+  F G+    ++P+  T+VS+ S  S L   ++ +
Sbjct: 284 EVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISR 343

Query: 129 AIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           +I    +R    + ++++ NA+++ Y + G +     +F ++P+++ +SW T++ GY + 
Sbjct: 344 SILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQN 403

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G   EA+  +  ME+ ++  PN+ T V+++ A S + AL  G  +H+ +  +  L +   
Sbjct: 404 GLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKL-IKNSLYLDVF 462

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V   +I++Y KCG +  A+ +F  +     + W+ +I+ L ++G G +ALQLF  M+   
Sbjct: 463 VATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAER 522

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           V  D +TF++L+SACSH GLVD+G   F  M   Y I P ++HY C+VD+ GRAG LE+A
Sbjct: 523 VKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKA 582

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
              +R MPI+ + S+WGALL+AC+I+ N E+       L+     +VG + L+SN +A  
Sbjct: 583 YELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANT 642

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           ++WE   K+R   R  GL+K  G S + V
Sbjct: 643 EKWEGVIKVRSLARDRGLRKTPGWSSVVV 671



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 209/408 (51%), Gaps = 14/408 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YTF   LKAC      +K   +H  V + G   D+F+  SL+H Y     +  AH++F
Sbjct: 123 DFYTFPPILKACVSLVDGKK---VHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVF 179

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAI---DMFCGIDVKPNANTLVSVLSACSSLVSHK 125
             +   DV SW  +ISG  + G    A+   +   G  VK +  T+ S+L  C+      
Sbjct: 180 VDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVI 239

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G  IH H L++  ++++ + NA+++ Y + G L     +F +M  R++VSW ++I  Y 
Sbjct: 240 NGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYE 299

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +      A+  F+ M+      P+  T+V++ S  S +S     + +  ++  R  L   
Sbjct: 300 QNNDPSTALRFFKGMQ-LGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKD 358

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM-I 304
            ++GNA++NMY K G +  A  VF+ L  KD ISW+T+++G   NG   +A+  +++M  
Sbjct: 359 VVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEE 418

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAM--STVYEIVPQMQHYACVVDMYGRAG 362
                P+  T++++I A SH G + QG+ +   +  +++Y  V       C++D+YG+ G
Sbjct: 419 CRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVA---TCLIDLYGKCG 475

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKK 410
            LE+A +   E+P +     W A++ +  IH   E   ++ +D++ ++
Sbjct: 476 RLEDAMSLFYEIPRDTSVP-WNAIIASLGIHGRGEEALQLFKDMLAER 522



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 178/373 (47%), Gaps = 27/373 (7%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           ++HA ++ +G   +I +   L++ YVT  DI  +   F+ +   ++ SW +IIS   + G
Sbjct: 40  KLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFG 99

Query: 91  FHKEAID-------MFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNI 143
            + EA++       M  G  ++P+  T   +L AC SLV    GK +H    +   E+++
Sbjct: 100 KYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFKMGFEDDV 156

Query: 144 ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
            +  +++  Y R G L     +FV MP ++V SW  MI G+ + G    A+ V   M K 
Sbjct: 157 FVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRM-KG 215

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
           +  + +  T+ ++L  C+    +  G  +H ++  ++ L     V NA+INMY K G + 
Sbjct: 216 EGVKMDTITVASILPVCAQSDDVINGVLIHLHV-LKHGLDSDVFVSNALINMYSKFGRLQ 274

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
            A  VF+ +  +D +SW+++I+    N     AL+ F  M +  + PD +T ++L S  S
Sbjct: 275 DAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFS 334

Query: 324 HGGLVDQ-------GLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPI 376
              L DQ       G ++ +       ++        +V+MY + G +  A     ++P 
Sbjct: 335 Q--LSDQRISRSILGFVIRREWLDKDVVIGN-----ALVNMYAKLGYMNCAHTVFDQLPR 387

Query: 377 EAEWSVWGALLNA 389
           +   S W  L+  
Sbjct: 388 KDTIS-WNTLVTG 399



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 120/265 (45%), Gaps = 9/265 (3%)

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           K +HA  L      NI+L   +++ Y+  G ++     F  + K+N+ SW ++I  Y   
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRF 98

Query: 188 GFCKEAVSVFQE---MEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           G   EA++   +   M       P+  T   +L AC S   L  GK VH  +  +     
Sbjct: 99  GKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVS---LVDGKKVHCCV-FKMGFED 154

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
              V  +++++Y + G + +A +VF  +  KD  SW+ +ISG   NG    AL + + M 
Sbjct: 155 DVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMK 214

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
              V  D +T  +++  C+    V  G +L       + +   +     +++MY + G L
Sbjct: 215 GEGVKMDTITVASILPVCAQSDDVING-VLIHLHVLKHGLDSDVFVSNALINMYSKFGRL 273

Query: 365 EEAEAFIREMPIEAEWSVWGALLNA 389
           ++A+    +M +  +   W +++ A
Sbjct: 274 QDAQMVFDQMEVR-DLVSWNSIIAA 297



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 3/114 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T+   + A S     Q+ ++IHA +I+     D+F+   L+  Y     +  A  +F
Sbjct: 425 NQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLF 484

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 119
             +     V W  II+ L   G  +EA+ +F  +    VK +  T VS+LSACS
Sbjct: 485 YEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACS 538


>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 727

 Score =  285 bits (728), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 150/448 (33%), Positives = 256/448 (57%), Gaps = 5/448 (1%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           L AC      +  + +    +  G   D+++ N+++  Y    D   AH++F+ +V+ DV
Sbjct: 240 LPACGRLEAVKLGMALQVCAVRSGFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDV 299

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLVSHKLGKAIHAH 133
           VSW+T+I+G S+   ++E+  ++ G   + +  NA    SVL A   L   K GK +H  
Sbjct: 300 VSWSTLIAGYSQNCLYQESYKLYIGMINVGLATNAIVATSVLPALGKLELLKQGKEMHNF 359

Query: 134 SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
            L+    +++++ +A++  Y  CGS+     +F     ++++ W +MI GY   G  + A
Sbjct: 360 VLKEGLMSDVVVGSALIVMYANCGSIKEAESIFECTSDKDIMVWNSMIVGYNLVGDFESA 419

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVI 253
              F+ +    E  PN  T+V++L  C+ + AL  GK +H Y+ T+  L ++  VGN++I
Sbjct: 420 FFTFRRIWGA-EHRPNFITVVSILPICTQMGALRQGKEIHGYV-TKSGLGLNVSVGNSLI 477

Query: 254 NMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDV 313
           +MY KCG + +  +VF  +  ++  +++T+IS    +G G + L  +  M      P+ V
Sbjct: 478 DMYSKCGFLELGEKVFKQMMVRNVTTYNTMISACGSHGQGEKGLAFYEQMKEEGNRPNKV 537

Query: 314 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIRE 373
           TFI+L+SACSH GL+D+G +L+ +M   Y I P M+HY+C+VD+ GRAG L+ A  FI  
Sbjct: 538 TFISLLSACSHAGLLDRGWLLYNSMINDYGIEPNMEHYSCMVDLIGRAGDLDGAYKFITR 597

Query: 374 MPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDT 433
           MP+  + +V+G+LL ACR+H   E+ + + + ++  K    G + L+SN +A   RWED 
Sbjct: 598 MPMTPDANVFGSLLGACRLHNKVELTELLAERILQLKADDSGHYVLLSNLYASGKRWEDM 657

Query: 434 NKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           +K+R  I+  GL+KK G SWI+V   I+
Sbjct: 658 SKVRSMIKDKGLEKKPGSSWIQVGHCIY 685



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 194/389 (49%), Gaps = 20/389 (5%)

Query: 10  HYTFTQALKACSLAHPHQKALEIHAHVIEYGHL-----HDIFIQNSLLHFYVTVKDIFSA 64
           H+T T   +  S  + H+ A  +HA ++  G       H     + L++ YV    +  A
Sbjct: 28  HFTVTSFHRLKSPPNLHE-ARTLHALLLVLGFFQPTCPHSSSFASQLVNVYVNFGSLQHA 86

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSL 121
              F ++    +++W  I+ GL   G   +AI  +  +    V P+  T   VL ACSSL
Sbjct: 87  FLTFRALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHGVTPDNYTYPLVLKACSSL 146

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
            + +LG+ +H  ++    + N+ +  A++D + +CGS+     +F +MP R++ SWT +I
Sbjct: 147 HALQLGRWVH-ETMHGKTKANVYVQCAVIDMFAKCGSVEDARRMFEEMPDRDLASWTALI 205

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
            G    G C EA+ +F++M +++   P+   + ++L AC  + A+  G  +    + R  
Sbjct: 206 CGTMWNGECLEALLLFRKM-RSEGLMPDSVIVASILPACGRLEAVKLGMALQ-VCAVRSG 263

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
                 V NAVI+MY KCGD   A +VF+ + Y D +SWST+I+G + N   +++ +L+ 
Sbjct: 264 FESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKLYI 323

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY---EIVPQMQHYACVVDMY 358
            MI   +  + +   +++ A     L+ QG    K M        ++  +   + ++ MY
Sbjct: 324 GMINVGLATNAIVATSVLPALGKLELLKQG----KEMHNFVLKEGLMSDVVVGSALIVMY 379

Query: 359 GRAGLLEEAEAFIREMPIEAEWSVWGALL 387
              G ++EAE+ I E   + +  VW +++
Sbjct: 380 ANCGSIKEAES-IFECTSDKDIMVWNSMI 407



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 102/400 (25%), Positives = 193/400 (48%), Gaps = 8/400 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    + ++YT+   LKACS  H  Q    +H   +      ++++Q +++  +     
Sbjct: 124 MLQHGVTPDNYTYPLVLKACSSLHALQLGRWVH-ETMHGKTKANVYVQCAVIDMFAKCGS 182

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           +  A ++F  +   D+ SWT +I G    G   EA+ +F  +    + P++  + S+L A
Sbjct: 183 VEDARRMFEEMPDRDLASWTALICGTMWNGECLEALLLFRKMRSEGLMPDSVIVASILPA 242

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C  L + KLG A+   ++R+  E+++ + NA++D Y +CG       +F  M   +VVSW
Sbjct: 243 CGRLEAVKLGMALQVCAVRSGFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSW 302

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
           +T+I GY++    +E+  ++  M     A  N     +VL A   +  L  GK +H+++ 
Sbjct: 303 STLIAGYSQNCLYQESYKLYIGMINVGLAT-NAIVATSVLPALGKLELLKQGKEMHNFV- 360

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            +  L    +VG+A+I MY  CG +  A  +F   + KD + W+++I G  + G    A 
Sbjct: 361 LKEGLMSDVVVGSALIVMYANCGSIKEAESIFECTSDKDIMVWNSMIVGYNLVGDFESAF 420

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
             F  +      P+ +T ++++  C+  G + QG  +     T   +   +     ++DM
Sbjct: 421 FTFRRIWGAEHRPNFITVVSILPICTQMGALRQGKEI-HGYVTKSGLGLNVSVGNSLIDM 479

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
           Y + G LE  E   ++M +    + +  +++AC  H   E
Sbjct: 480 YSKCGFLELGEKVFKQMMVR-NVTTYNTMISACGSHGQGE 518



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 72/166 (43%), Gaps = 4/166 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L  C+     ++  EIH +V + G   ++ + NSL+  Y     +    ++F
Sbjct: 434 NFITVVSILPICTQMGALRQGKEIHGYVTKSGLGLNVSVGNSLIDMYSKCGFLELGEKVF 493

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHK 125
             ++  +V ++ T+IS     G  ++ +  +  +     +PN  T +S+LSACS      
Sbjct: 494 KQMMVRNVTTYNTMISACGSHGQGEKGLAFYEQMKEEGNRPNKVTFISLLSACSHAGLLD 553

Query: 126 LGKAIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMP 170
            G  ++   + +   E N+   + ++D   R G L        +MP
Sbjct: 554 RGWLLYNSMINDYGIEPNMEHYSCMVDLIGRAGDLDGAYKFITRMP 599


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  285 bits (728), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 158/464 (34%), Positives = 247/464 (53%), Gaps = 41/464 (8%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ--IFNSVVFPDVVSWTTIISGLSK 88
           ++HAH+I  G     ++   L+     V     ++   +F  V +P+   WT +I G + 
Sbjct: 60  QVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYAL 119

Query: 89  CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHS-LRNLNENNII 144
            G   E+ + +  +    V P + T  ++  AC + ++  LGK +HA + L     +++ 
Sbjct: 120 QGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLY 179

Query: 145 LDNAILDFYIRCGSLA-------------------------------SCGYLFVKMPKRN 173
           + N+++D Y++CG L                                S   LF  +P ++
Sbjct: 180 VGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKD 239

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
           +V+WT M+ GYA+ G  KEA+  FQ+M+     E +E TL  V+SAC+ + A+    ++ 
Sbjct: 240 MVAWTAMVTGYAQNGRPKEALEYFQKMQDVG-METDEVTLAGVISACAQLGAVKHANWIR 298

Query: 234 SYISTRYDLSVSN--LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNG 291
             I+ R     S   +VG+A+I+MY KCG    A +VF ++  ++  S+S++I G AM+G
Sbjct: 299 D-IAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHG 357

Query: 292 CGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY 351
               ALQLF  M+   + P+ VTFI ++SACSH GLV+QG  LF  M   + + P   HY
Sbjct: 358 RAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHY 417

Query: 352 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKG 411
           AC+VD+ GRAG LEEA   ++ MP+E    VWGALL ACRIH N ++      +L   + 
Sbjct: 418 ACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEP 477

Query: 412 VSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
             +G + L+SN +A A RWE+ +K+R  IR  G KK  GCSW E
Sbjct: 478 NGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFE 521



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 180/409 (44%), Gaps = 89/409 (21%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHL-HDIFIQNSLLHFYVTV----------- 58
           +TF+   KAC  A       ++HA  I  G    D+++ NS++  YV             
Sbjct: 143 FTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFD 202

Query: 59  --------------------KDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDM 98
                                D+ SA  +F+ +   D+V+WT +++G ++ G  KEA++ 
Sbjct: 203 EMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEY 262

Query: 99  F---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNE-------NNIILDNA 148
           F     + ++ +  TL  V+SAC+     +LG   HA+ +R++ E        N+++ +A
Sbjct: 263 FQKMQDVGMETDEVTLAGVISACA-----QLGAVKHANWIRDIAERSGFGPSGNVVVGSA 317

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
           ++D Y +CGS      +F  M +RNV S+++MI GYA  G    A+ +F +M KT E  P
Sbjct: 318 LIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKT-EIRP 376

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           N+ T + +LSACS    +  G+ + + +   + ++ S                       
Sbjct: 377 NKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPS----------------------- 413

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
                      ++ ++  L   GC  +AL L   M +    P+   + AL+ AC   G  
Sbjct: 414 --------PDHYACMVDLLGRAGCLEEALDLVKTMPME---PNGGVWGALLGACRIHGNP 462

Query: 329 DQGLILFKAMSTVYEIVPQ-MQHYACVVDMYGRAGLLEEAEAF---IRE 373
           D   I   A + ++++ P  + +Y  + ++Y  AG  EE       IRE
Sbjct: 463 DIAQI---AANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIRE 508


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  285 bits (728), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 145/415 (34%), Positives = 250/415 (60%), Gaps = 5/415 (1%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID 103
           +I + N+++   +  + I  A Q+F+++   D +SWTTII+GL++ G  KEA+D F  + 
Sbjct: 203 NIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMG 262

Query: 104 VKP---NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLA 160
           ++    +  T  SVL+AC   ++   GK IHA+ +R   ++NI + +A+LD Y +C ++ 
Sbjct: 263 IEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVK 322

Query: 161 SCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
               +F KM  +NV+SWT M+ GY + G+ +EAV +F +M++  E  P++ TL +V+S+C
Sbjct: 323 YAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRN-EIHPDDFTLGSVISSC 381

Query: 221 SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
           +++++L  G   H   +    L     V NA+I +Y KCG +  A Q+F+ +  +D++SW
Sbjct: 382 ANLASLEEGAQFHGQ-ALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSW 440

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340
           + ++SG A  G   + + LF  M+ + + PD VTF+ ++SACS  GLV++G   F+ M  
Sbjct: 441 TALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVK 500

Query: 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFD 400
            + I P   HY C++D+  RAG LEEA+ FI +MP   +   W  LL++CR++ N E+  
Sbjct: 501 EHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGK 560

Query: 401 RIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
              + L   +  +  ++ L+S+ +A   +W+D  K+R  +R MG+KK+ G SWI+
Sbjct: 561 WAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIK 615



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 126/466 (27%), Positives = 209/466 (44%), Gaps = 104/466 (22%)

Query: 6   SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAH 65
           SS N+YT   ALK C  A    +  ++H  +I      + F+ N+L++ Y  + D+ +A 
Sbjct: 3   SSSNYYT--AALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNAR 60

Query: 66  QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPN--------------ANTL 111
            +F+ +  P++ SW T++S  SK G+ ++   +F   D  PN               N L
Sbjct: 61  NVFDHIPQPNLFSWNTLLSAYSKLGYLQDMQRVF---DSMPNHDVVSWNSLLSGYAGNGL 117

Query: 112 VS--------------------------VLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
           +S                          +LS+    V   LG+ IH    +   ++ + +
Sbjct: 118 ISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVD--LGRQIHGQIFKFGYQSYLFV 175

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVV------------------------------ 175
            + ++D Y + G +     +F ++P++N+V                              
Sbjct: 176 GSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDS 235

Query: 176 -SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
            SWTT+I G  + G  KEAV  F+EM   +    ++ T  +VL+AC    AL  GK +H+
Sbjct: 236 ISWTTIITGLTQNGLFKEAVDKFKEM-GIEGFCMDQFTFGSVLTACGGFLALDEGKQIHA 294

Query: 235 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
           YI  R D   +  VG+A+++MY KC +V  A  VF  + +K+ ISW+ ++ G   NG   
Sbjct: 295 YI-IRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSE 353

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYE 343
           +A+++F  M  N + PDD T  ++IS+C+           HG  +  GLI F  +S    
Sbjct: 354 EAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNA-- 411

Query: 344 IVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
                     ++ +YG+ G LE A     EM I  E S W AL++ 
Sbjct: 412 ----------LITLYGKCGSLEHAHQLFHEMKIRDEVS-WTALVSG 446



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 149/287 (51%), Gaps = 5/287 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +TF   L AC       +  +IHA++I   +  +IF+ ++LL  Y   +++  A  +F
Sbjct: 269 DQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVF 328

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
             +   +V+SWT ++ G  + G+ +EA+ +FC +   ++ P+  TL SV+S+C++L S +
Sbjct: 329 RKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLE 388

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G   H  +L +     + + NA++  Y +CGSL     LF +M  R+ VSWT ++ GYA
Sbjct: 389 EGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYA 448

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G   E +S+F+ M       P+  T V VLSACS    +  G +    +   + ++  
Sbjct: 449 QFGKANETISLFETM-LAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPI 507

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DKISWSTVISGLAMNG 291
                 +I++  + G +  A    N + +  D I W+T++S   +NG
Sbjct: 508 PDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNG 554



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 85/166 (51%), Gaps = 19/166 (11%)

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN-AV 308
           N +++ Y K G +    +VF+ +   D +SW++++SG A NG   ++++++++M+ + +V
Sbjct: 75  NTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSV 134

Query: 309 FPDDVTFIALISACSHGGLVDQG------LILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
             + +TF  ++   S+ G VD G      +  F   S ++   P       +VDMY + G
Sbjct: 135 NLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSP-------LVDMYAKTG 187

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNA---CR-IHRNDEMFDRIRQ 404
            + +A     E+P E    V+  ++     CR I   +++FD + +
Sbjct: 188 FINDANRIFEEIP-EKNIVVYNTMITGLLRCRFIVEAEQLFDNMPE 232


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  285 bits (728), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 144/449 (32%), Positives = 253/449 (56%), Gaps = 5/449 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L  C+ +      + IH HV+++G   D+F+ N+L++ Y     +  A  +F+ +
Sbjct: 224 TVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQM 283

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
              D+VSW +II+   +      A+  F G+    ++P+  T+VS+ S  S L   ++ +
Sbjct: 284 EVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISR 343

Query: 129 AIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           +I    +R    + ++++ NA+++ Y + G +     +F ++P+++ +SW T++ GY + 
Sbjct: 344 SILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQN 403

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G   EA+  +  ME+ ++  PN+ T V+++ A S + AL  G  +H+ +  +  L +   
Sbjct: 404 GLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKL-IKNSLYLDVF 462

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V   +I++Y KCG +  A+ +F  +     + W+ +I+ L ++G G +ALQLF  M+   
Sbjct: 463 VATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAER 522

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           V  D +TF++L+SACSH GLVD+G   F  M   Y I P ++HY C+VD+ GRAG LE+A
Sbjct: 523 VKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKA 582

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
              +R MPI+ + S+WGALL+AC+I+ N E+       L+     +VG + L+SN +A  
Sbjct: 583 YELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANT 642

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           ++WE   K+R   R  GL+K  G S + V
Sbjct: 643 EKWEGVIKVRSLARDRGLRKTPGWSSVVV 671



 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 209/408 (51%), Gaps = 14/408 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YTF   LKAC      +K   +H  V + G   D+F+  SL+H Y     +  AH++F
Sbjct: 123 DFYTFPPILKACVSLVDGKK---VHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVF 179

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAI---DMFCGIDVKPNANTLVSVLSACSSLVSHK 125
             +   DV SW  +ISG  + G    A+   +   G  VK +  T+ S+L  C+      
Sbjct: 180 VDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVI 239

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G  IH H L++  ++++ + NA+++ Y + G L     +F +M  R++VSW ++I  Y 
Sbjct: 240 NGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYE 299

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +      A+  F+ M+      P+  T+V++ S  S +S     + +  ++  R  L   
Sbjct: 300 QNNDPSTALRFFKGMQ-LGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKD 358

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM-I 304
            ++GNA++NMY K G +  A  VF+ L  KD ISW+T+++G   NG   +A+  +++M  
Sbjct: 359 VVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEE 418

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAM--STVYEIVPQMQHYACVVDMYGRAG 362
                P+  T++++I A SH G + QG+ +   +  +++Y  V       C++D+YG+ G
Sbjct: 419 CRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVA---TCLIDLYGKCG 475

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKK 410
            LE+A +   E+P +     W A++ +  IH   E   ++ +D++ ++
Sbjct: 476 RLEDAMSLFYEIPRDTSVP-WNAIIASLGIHGRGEEALQLFKDMLAER 522



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 178/373 (47%), Gaps = 27/373 (7%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           ++HA ++ +G   +I +   L++ YVT  DI  +   F+ +   ++ SW +IIS   + G
Sbjct: 40  KLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFG 99

Query: 91  FHKEAID-------MFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNI 143
            + EA++       M  G  ++P+  T   +L AC SLV    GK +H    +   E+++
Sbjct: 100 KYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFKMGFEDDV 156

Query: 144 ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
            +  +++  Y R G L     +FV MP ++V SW  MI G+ + G    A+ V   M K 
Sbjct: 157 FVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRM-KG 215

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
           +  + +  T+ ++L  C+    +  G  +H ++  ++ L     V NA+INMY K G + 
Sbjct: 216 EGVKMDTITVASILPVCAQSDDVINGVLIHLHV-LKHGLDSDVFVSNALINMYSKFGRLQ 274

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
            A  VF+ +  +D +SW+++I+    N     AL+ F  M +  + PD +T ++L S  S
Sbjct: 275 DAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFS 334

Query: 324 HGGLVDQ-------GLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPI 376
              L DQ       G ++ +       ++        +V+MY + G +  A     ++P 
Sbjct: 335 Q--LSDQRISRSILGFVIRREWLDKDVVIGN-----ALVNMYAKLGYMNCAHTVFDQLPR 387

Query: 377 EAEWSVWGALLNA 389
           +   S W  L+  
Sbjct: 388 KDTIS-WNTLVTG 399



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 120/265 (45%), Gaps = 9/265 (3%)

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           K +HA  L      NI+L   +++ Y+  G ++     F  + K+N+ SW ++I  Y   
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRF 98

Query: 188 GFCKEAVSVFQE---MEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           G   EA++   +   M       P+  T   +L AC S   L  GK VH  +  +     
Sbjct: 99  GKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVS---LVDGKKVHCCV-FKMGFED 154

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
              V  +++++Y + G + +A +VF  +  KD  SW+ +ISG   NG    AL + + M 
Sbjct: 155 DVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMK 214

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
              V  D +T  +++  C+    V  G +L       + +   +     +++MY + G L
Sbjct: 215 GEGVKMDTITVASILPVCAQSDDVING-VLIHLHVLKHGLDSDVFVSNALINMYSKFGRL 273

Query: 365 EEAEAFIREMPIEAEWSVWGALLNA 389
           ++A+    +M +  +   W +++ A
Sbjct: 274 QDAQMVFDQMEVR-DLVSWNSIIAA 297



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 3/114 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T+   + A S     Q+ ++IHA +I+     D+F+   L+  Y     +  A  +F
Sbjct: 425 NQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLF 484

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 119
             +     V W  II+ L   G  +EA+ +F  +    VK +  T VS+LSACS
Sbjct: 485 YEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACS 538


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  285 bits (728), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 147/455 (32%), Positives = 249/455 (54%), Gaps = 5/455 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  +F   L  CS          +HA  +  G + D+ +  +L+  Y+    I  A ++F
Sbjct: 262 NRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVF 321

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           + +   DVVSWT +I G ++    ++A  +F  +    ++P+  T + +++AC+S     
Sbjct: 322 DKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLS 381

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           L + IH+  +R     ++++D A++  Y +CG++     +F  M +R+VVSW+ MIG Y 
Sbjct: 382 LAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYV 441

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           E G  +EA   F  M K    EP+  T +N+L+AC  + AL  G  +++  + + DL   
Sbjct: 442 ENGCGEEAFETFHLM-KRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQ-AIKADLVSH 499

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             VGNA+INM VK G +  A  +F  +  +D ++W+ +I G +++G  R+AL LF  M+ 
Sbjct: 500 IPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLK 559

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
               P+ VTF+ ++SACS  G V++G   F  +     IVP M+ Y C+VD+ GRAG L+
Sbjct: 560 ERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELD 619

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EAE  I  MP++   S+W  LL ACRI+ N ++ +R  +  +  +      +  +S+ +A
Sbjct: 620 EAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYA 679

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            A  WE+  K+R  +   G++K+ GC+WIEV   +
Sbjct: 680 AAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKL 714



 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 126/409 (30%), Positives = 219/409 (53%), Gaps = 11/409 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           TF   L ACS     +   E HA VI+ G + D  I  +L+  YV    +  A Q+F+ +
Sbjct: 164 TFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGL 223

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
              DV ++  +I G +K G  ++A  +F  +     KPN  + +S+L  CS+  +   GK
Sbjct: 224 YKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGK 283

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
           A+HA  +     +++ +  A++  Y+ CGS+     +F KM  R+VVSWT MI GYAE  
Sbjct: 284 AVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENS 343

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
             ++A  +F  M++ +  +P+  T +++++AC+S + LS  + +HS +  R       LV
Sbjct: 344 NIEDAFGLFATMQE-EGIQPDRITYIHIINACASSADLSLAREIHSQV-VRAGFGTDLLV 401

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
             A+++MY KCG +  A QVF+ ++ +D +SWS +I     NGCG +A + F LM  N V
Sbjct: 402 DTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNV 461

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD VT+I L++AC H G +D G+ ++   +   ++V  +     +++M  + G +E A 
Sbjct: 462 EPDVVTYINLLNACGHLGALDLGMEIY-TQAIKADLVSHIPVGNALINMNVKHGSIERAR 520

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQDLVNKKGVS 413
            +I E  ++ +   W  ++    +H N     ++FDR+ ++      V+
Sbjct: 521 -YIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVT 568



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 96/315 (30%), Positives = 170/315 (53%), Gaps = 5/315 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T+ +  + C +        ++  H+I+ G   +I+  N+L+  +    ++  A Q F+SV
Sbjct: 63  TYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSV 122

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
               VV+W  II+G ++ G  KEA  +F  +    ++P+  T + VL ACSS    KLGK
Sbjct: 123 ENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGK 182

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
             HA  ++    ++  +  A++  Y++ GS+     +F  + KR+V ++  MIGGYA+ G
Sbjct: 183 EFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSG 242

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
             ++A  +F  M++ +  +PN  + +++L  CS+  AL++GK VH+       L     V
Sbjct: 243 DGEKAFQLFYRMQQ-EGFKPNRISFLSILDGCSTPEALAWGKAVHAQ-CMNTGLVDDVRV 300

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
             A+I MY+ CG +  A +VF+ +  +D +SW+ +I G A N     A  LF+ M    +
Sbjct: 301 ATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGI 360

Query: 309 FPDDVTFIALISACS 323
            PD +T+I +I+AC+
Sbjct: 361 QPDRITYIHIINACA 375



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 142/280 (50%), Gaps = 9/280 (3%)

Query: 107 NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLF 166
           ++ T V +   C  L    LGK +  H +++  + NI   N ++  +  CG++      F
Sbjct: 60  DSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTF 119

Query: 167 VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA-EPNEATLVNVLSACSSISA 225
             +  + VV+W  +I GYA+ G  KEA ++F++M    EA EP+  T + VL ACSS + 
Sbjct: 120 DSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQM--VDEAMEPSIITFLIVLDACSSPAG 177

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285
           L  GK  H+ +  +        +G A+++MYVK G +  A QVF+ L  +D  +++ +I 
Sbjct: 178 LKLGKEFHAQV-IKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIG 236

Query: 286 GLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEI 344
           G A +G G +A QLF  M      P+ ++F++++  CS    +  G  +  + M+T   +
Sbjct: 237 GYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNT--GL 294

Query: 345 VPQMQHYACVVDMYGRAGLLEEAEAFIREMPIE--AEWSV 382
           V  ++    ++ MY   G +E A     +M +     W+V
Sbjct: 295 VDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTV 334


>gi|297741134|emb|CBI31865.3| unnamed protein product [Vitis vinifera]
          Length = 573

 Score =  284 bits (727), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 151/448 (33%), Positives = 249/448 (55%), Gaps = 48/448 (10%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           YTF   LKAC+     Q+  ++H   ++ G L D+++QNSLLHFY        A ++F+ 
Sbjct: 106 YTFPVVLKACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDE 165

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAI 130
           ++  DVVSWT +ISG  + G   EAI++F  +DV PN  T VSVL AC  +    +GK +
Sbjct: 166 MLVRDVVSWTGLISGYVRTGLFDEAINLFLKMDVVPNVATFVSVLVACGRMGYLSMGKGV 225

Query: 131 HAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFC 190
           H    +      +++ NA++D Y++C  L     LF ++P R++VSWT++I G  +    
Sbjct: 226 HGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQP 285

Query: 191 KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGN 250
           K+++ +F +M+ +   EP+   L +VLSAC+S+ AL +G++V  YI  R  +     +G 
Sbjct: 286 KDSLELFYDMQISG-VEPDRIILTSVLSACASLGALDYGRWVQEYIE-RQGIEWDIHIGT 343

Query: 251 AVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP 310
           A+++MY KCG + +A+ +FN +  ++  +W+ ++ GLAM+G G +AL+ F LMI   + P
Sbjct: 344 ALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRP 403

Query: 311 DDVTFIALISACSHGGLVDQGLILFKAM-STVYEIVPQMQHYACVVDMYGRAGLLEEAEA 369
           ++VTF+A+++AC H GLV +G   F  M S  +   P+++HY C++D+  RAGLL+EA  
Sbjct: 404 NEVTFLAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYN 463

Query: 370 FIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADR 429
                                                        G + L+SN +A  +R
Sbjct: 464 ---------------------------------------------GVYVLLSNIYATNER 478

Query: 430 WEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           W+D  ++R  ++  G++K  G S IEV+
Sbjct: 479 WDDVTRVRRLMKDKGIRKFPGSSVIEVD 506



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/370 (30%), Positives = 191/370 (51%), Gaps = 16/370 (4%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV----VSWTTIISGL 86
           +IHAH+I  G LHD F+ + +  F+   K I      F+ +   D+    + + T+I+  
Sbjct: 23  QIHAHLIASGLLHDEFVLSKVSEFF--GKHIGFVDYAFDFLNQTDLHVGTLPYNTLIAAY 80

Query: 87  SKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNI 143
           +     K A  ++    G    P+  T   VL AC+  +  + G+ +H  +++     ++
Sbjct: 81  ASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGFLCDL 140

Query: 144 ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
            + N++L FY  CG     G +F +M  R+VVSWT +I GY   G   EA+++F +M+  
Sbjct: 141 YVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKMDVV 200

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
               PN AT V+VL AC  +  LS GK VH  +  R    +  +VGNA+++MYVKC  + 
Sbjct: 201 ----PNVATFVSVLVACGRMGYLSMGKGVHGLVYKR-AFGIGLVVGNALVDMYVKCECLC 255

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
            A ++F+ L  +D +SW+++ISGL      + +L+LF  M I+ V PD +   +++SAC+
Sbjct: 256 EARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACA 315

Query: 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 383
             G +D G  + + +     I   +     +VDMY + G +E A      +P    ++ W
Sbjct: 316 SLGALDYGRWVQEYIER-QGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFT-W 373

Query: 384 GALLNACRIH 393
            ALL    +H
Sbjct: 374 NALLGGLAMH 383


>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
          Length = 602

 Score =  284 bits (727), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 168/486 (34%), Positives = 266/486 (54%), Gaps = 36/486 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +TF   LKA       ++  E+HA V+  G     F+  +LL FYV    +    Q+F
Sbjct: 90  NGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVF 149

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLVSHK 125
           + +  P +V WT II       F ++A+++F     + + P+   + +V+SAC  L    
Sbjct: 150 DEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLG 209

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC----------------------- 162
           + KA+H    ++  E +  + + ++  Y  CGSL                          
Sbjct: 210 VAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSV 269

Query: 163 --------GYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
                     LF  MP R+VVSW +MIGG+A  G  +EA++ F EME +    PN  TL+
Sbjct: 270 EHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSG-VSPNALTLL 328

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
           + LSAC+S  AL  G ++H+Y+  + D++    + +++I+MY KCGD+  A+Q+F     
Sbjct: 329 STLSACASHGALDTGAWIHAYVD-KNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTR 387

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           +D  +W++++ GLAM+G G +AL  FS M    V PDDVT + ++SAC+H GL+DQG   
Sbjct: 388 RDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWY 447

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F++M  V+ +VP+++HY C+VD+ GR G L+EA   I  MP+EA   +WGA L+ACR+H 
Sbjct: 448 FQSMEKVFGLVPKVEHYGCMVDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSACRVHN 507

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           N E+ +   + L+           ++SN +A   +W+ +  +R EI++ GLKK  GCS I
Sbjct: 508 NVELGEVAARRLLGLDPRDPWARVMLSNMYAEEAKWDRSMGLRKEIKKKGLKKSPGCSSI 567

Query: 455 EVNPSI 460
           EVN S+
Sbjct: 568 EVNGSV 573



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 154/346 (44%), Gaps = 39/346 (11%)

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCG 163
           ++PN +T + +L A  S    K G+ +HA  +R     +  +  A+L FY+ CG +    
Sbjct: 87  LRPNGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGR 146

Query: 164 YLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI 223
            +F +M +  +V WT +I  Y    F ++A+ +F+ M +     P+   +  V+SAC  +
Sbjct: 147 QVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVG-LTPDMVAISTVVSACGLL 205

Query: 224 SALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI----------------- 266
             L   K +H +I  +  + V   V + +I+ Y +CG +  A                  
Sbjct: 206 GDLGVAKAMHCFIE-KSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTM 264

Query: 267 --------------QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD 312
                         Q+F  +  +D +SW+++I G A  G  ++AL  F  M  + V P+ 
Sbjct: 265 IHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNA 324

Query: 313 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIR 372
           +T ++ +SAC+  G +D G  +  A     ++       + ++DMY + G +++A     
Sbjct: 325 LTLLSTLSACASHGALDTGAWI-HAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFE 383

Query: 373 EMPIEAEWSVWGALLNACRIHRNDE----MFDRIRQDLVNKKGVSV 414
           E     +   W +++    +H   E     F ++++  V    V++
Sbjct: 384 E-STRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTM 428


>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
          Length = 569

 Score =  284 bits (727), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 165/512 (32%), Positives = 262/512 (51%), Gaps = 56/512 (10%)

Query: 1   MLSCPSSYNHYTFTQAL----KACSLAHPH------QKALEIHAHVIEYGHLHDIFIQNS 50
           ++ C   Y+H    Q L       SL   H      +K  +IH  +I  G     F+   
Sbjct: 12  VVKCHDMYDHIGEIQVLLEHMDDGSLEETHITCDTIKKLKQIHTQIIVNGFSQKNFLLVK 71

Query: 51  LLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPN 107
           LL FY+T  ++ +AH++F  +  P    W  +I G S+     + ++++  +   + +PN
Sbjct: 72  LLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPN 131

Query: 108 ANTLVSVLSACSSLVSHKLGKAIHAH--------------SLRNLN-------------- 139
             T   ++  C+     + G+ +H                SL NL               
Sbjct: 132 EFTYSFLIGGCARSXLLREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARR 191

Query: 140 ------ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
                 + NI+  N++L  Y+RCG +     +F +MP+RNVVSWTTMI G A+ G CK+A
Sbjct: 192 VFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQA 251

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV---GN 250
           + +F EM +    + ++  LV  LSAC+ +  L  G ++HSYI  R       L+    N
Sbjct: 252 LHLFHEMRRAG-VKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNN 310

Query: 251 AVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI---INA 307
           ++I+MY  CG +  A +VF  +  +  ISW+++I+G A  G   +AL +F  M     + 
Sbjct: 311 SLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDE 370

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
             PD +TFI ++ ACSH G VDQG   F+ M+  + IVP+++HY C+VD+  RAG L+EA
Sbjct: 371 GRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEA 430

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLV--NKKGVSVGTFALMSNTFA 425
                 MP++   +VWGALL  CRIH+N E+   + Q LV   K   + G   L+SN +A
Sbjct: 431 HRLXESMPMKPNDAVWGALLGGCRIHKNAELASHVAQKLVLELKPDQAAGYLVLLSNVYA 490

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            A RW+D   +R ++  +G++K  G SW+++N
Sbjct: 491 TAKRWQDVALVRQKMVEIGVRKPAGRSWVQIN 522


>gi|224065397|ref|XP_002301797.1| predicted protein [Populus trichocarpa]
 gi|222843523|gb|EEE81070.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score =  284 bits (727), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 158/450 (35%), Positives = 260/450 (57%), Gaps = 7/450 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           TFT A+KA S     +    I    +++G+  D+F+ +S+L+ YV    I  A  +F+ +
Sbjct: 108 TFTVAIKASSSLKDLEAGERIWRRAVDFGYGCDVFVGSSVLNLYVKCGKIDEAKLVFDKM 167

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
           V  DVV W T+I+GL + G   EA+DMF  +    ++ +   ++ ++ AC++L   KLG 
Sbjct: 168 VKRDVVCWATMITGLVQNGNVLEAVDMFRRMRKEGIEGDGVLMLGLVQACANLGELKLGL 227

Query: 129 AIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           ++H H++R  +  +++IL  +++D Y + G L     +F +MP++N VSW  +I G+A+ 
Sbjct: 228 SVHGHAVRREMLMDDVILQTSLVDMYAKIGDLELASRVFEQMPRKNAVSWGALISGFAQN 287

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           GF + A+ +  EM+ + E +P+ A LV+ L ACS +  L  GK +H YI  R  L    +
Sbjct: 288 GFAEYALDLLVEMQ-SLEFKPDTAVLVSALLACSQVGHLKLGKSIHGYIVRR--LGFELV 344

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           +G A+I+MY KCG +  A  +F+ +  +D I W+T+I+   ++G G++ L LF  M    
Sbjct: 345 LGTALIDMYAKCGSLSCAHAIFDRVDSRDVILWNTMIASYGIHGDGKEVLSLFLKMKEAN 404

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           + PD  TF +L+SA SH G VD G   F AM    +I P  +HYAC+VD++ RAG +EEA
Sbjct: 405 ISPDHATFASLLSALSHSGQVDVGQYWFNAMVNECKIPPSEKHYACMVDLFSRAGRVEEA 464

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
              I  M  E   ++W ALL+ C  +RN    +   + +++     +G +AL+SN F+ A
Sbjct: 465 YQLIESMNTEPGLAIWVALLSGCHNYRNLLFGEVAAKKILDLNPDDLGIYALVSNFFSLA 524

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
             W+  + +R  ++  G+KK  G S +EVN
Sbjct: 525 RMWDRVSILRKIMKETGMKKVPGYSAVEVN 554



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 187/400 (46%), Gaps = 24/400 (6%)

Query: 2   LSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNS-----LLHFYV 56
           LS P    H      L AC    P     +IHA +I  G    +F  NS     ++  Y 
Sbjct: 4   LSWPKRLKHL-----LLACKDEAP---VTQIHALIITTG----LFFANSNFNGLVIASYA 51

Query: 57  TVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVS 113
            +  I SA  +F+ +    V +W  +I   S+     E ++++  +     KP+++T   
Sbjct: 52  RIGGITSARHLFDKLPQRGVDAWNAMIVAYSRRYHLTEVLNLYHQMVNEGGKPDSSTFTV 111

Query: 114 VLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
            + A SSL   + G+ I   ++      ++ + +++L+ Y++CG +     +F KM KR+
Sbjct: 112 AIKASSSLKDLEAGERIWRRAVDFGYGCDVFVGSSVLNLYVKCGKIDEAKLVFDKMVKRD 171

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
           VV W TMI G  + G   EAV +F+ M K +  E +   ++ ++ AC+++  L  G  VH
Sbjct: 172 VVCWATMITGLVQNGNVLEAVDMFRRMRK-EGIEGDGVLMLGLVQACANLGELKLGLSVH 230

Query: 234 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG 293
            +   R  L    ++  ++++MY K GD+ +A +VF  +  K+ +SW  +ISG A NG  
Sbjct: 231 GHAVRREMLMDDVILQTSLVDMYAKIGDLELASRVFEQMPRKNAVSWGALISGFAQNGFA 290

Query: 294 RQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
             AL L   M      PD    ++ + ACS  G +  G  +   +  V  +  ++     
Sbjct: 291 EYALDLLVEMQSLEFKPDTAVLVSALLACSQVGHLKLGKSIHGYI--VRRLGFELVLGTA 348

Query: 354 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           ++DMY + G L  A A    +    +  +W  ++ +  IH
Sbjct: 349 LIDMYAKCGSLSCAHAIFDRVD-SRDVILWNTMIASYGIH 387


>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
          Length = 687

 Score =  284 bits (727), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 163/452 (36%), Positives = 260/452 (57%), Gaps = 19/452 (4%)

Query: 11  YTF-TQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN 69
           Y+F  +AL A  L  P + A   HAHV++ G   D F+ N+L+  Y   + +  A ++F+
Sbjct: 205 YSFLIKALAAAGLT-PVRGA---HAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFD 260

Query: 70  SVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLV--SVLSACSSLVSHKLG 127
            +   DVVSW T ++ + + G    A  MF   D  P  +T+   ++L   +     K G
Sbjct: 261 EMTTRDVVSWNTAMAAMVRQGEVDAARSMF---DEMPEKDTVSWNTMLDGYA-----KAG 312

Query: 128 KAIHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           +A  A  L + +   N++  + ++  Y + G +     +F KMP +N+V+WT M+   A+
Sbjct: 313 EAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQ 372

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
           +G  +EA  +F EM      E +   +V++L+AC+   +L+ GK +H ++  R  LS S 
Sbjct: 373 KGLVEEAGRLFTEMMDAA-IELDVIAVVSILAACAESGSLALGKRIHRHVRQR-KLSRST 430

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNM-LAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
           LV NA+++M+ KCG V  A  +F+  +  KD +SW+ +I G AM+G G +AL+LF+ M  
Sbjct: 431 LVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQ 490

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
               PD VT I ++SAC+H GLV++G   F  M T Y I PQ++HY C+VD+ GR GL++
Sbjct: 491 QGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIK 550

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EA   I+ MP E    +WG+LL+ACR+H+N E  +    +L N +  S G +A++SN +A
Sbjct: 551 EAVDMIKRMPWEPNEVIWGSLLSACRLHKNVEYAELAVNELSNLQPSSAGNYAVLSNIYA 610

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            A +W D  K R +++  G +K  G SWIE+N
Sbjct: 611 EAGKWSDMAKARVQMKGTGSQKTAGSSWIELN 642



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 78/398 (19%), Positives = 172/398 (43%), Gaps = 27/398 (6%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV------FPD--VVSWTTI 82
           E+HA +++ G   D    + L+  Y  ++ + +   +F++ V      FP    +   T+
Sbjct: 116 ELHAQLLKQGLHRDPHTASKLIASYALLRRVPACRCVFSAAVALPNSPFPSSTTLLTKTL 175

Query: 83  ISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN 142
           +   +       A+ +F  + ++       S L    +       +  HAH ++  +  +
Sbjct: 176 LRAYALNSLPHAALAVFLDVPLRQRGTFTYSFLIKALAAAGLTPVRGAHAHVVKLGSAED 235

Query: 143 IILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202
             + NA++D Y +   L+    +F +M  R+VVSW T +     +G    A S+F EM  
Sbjct: 236 TFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEM-- 293

Query: 203 TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 262
               E +  +   +L   +          +   +  R  +S S      V++ Y K GD+
Sbjct: 294 ---PEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWST-----VVSAYCKKGDM 345

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
            +A  +F+ +  K+ ++W+ ++S  A  G   +A +LF+ M+  A+  D +  +++++AC
Sbjct: 346 EMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAAC 405

Query: 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEW 380
           +  G +  G  + +    V +         C  ++DM+ + G +  A+       +E + 
Sbjct: 406 AESGSLALGKRIHR---HVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDL 462

Query: 381 SVWGALLNACRIH----RNDEMFDRIRQDLVNKKGVSV 414
             W  ++    +H    +  E+F +++Q   +   V++
Sbjct: 463 VSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTL 500


>gi|242096286|ref|XP_002438633.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
 gi|241916856|gb|EER90000.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
          Length = 529

 Score =  284 bits (727), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 157/489 (32%), Positives = 273/489 (55%), Gaps = 47/489 (9%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YT+   L+A  +     +  ++HA  ++ G   D +  +SLL  Y  +  +  A ++F
Sbjct: 45  DSYTYPFVLRAIGVMKLSVEGRKVHAAAVKTGFRWDAYTASSLLEMYTMLGRVDFARKVF 104

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           + +    +V W  ++    +CG    A+ +   ++     P+  TLV+ ++ACS      
Sbjct: 105 DEMPQRFLVLWNMMMRCYIRCGRFTAAVALAEEMERSGATPDRVTLVTAVTACSRAGDLS 164

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG+ I A+ +  +   ++ + NA+LD Y + G L     +F +MP+RN++SWT ++ GYA
Sbjct: 165 LGRRIRAY-MDGVFGFSLPVANALLDMYTKNGYLEEAVKMFQQMPERNIISWTILVSGYA 223

Query: 186 -------------------------------ERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
                                          + G  +EA+++F++M+  +  EP++ T+V
Sbjct: 224 VAGQLDKARMLFYQCTQKDLILWTAMINACVQHGSFEEALTLFRDMQ-LQRVEPDKFTVV 282

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
            +L+ C++I AL  G+++H Y   R ++ +  ++G A+I MY KCG V  ++Q+F  +  
Sbjct: 283 TLLTCCANIGALDQGEWIHQYAEGR-NMKIDAVLGTALIEMYSKCGHVDKSLQIFGRMQG 341

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           +D  +W+ +I GLA NG   +AL+LF  M  +   PD +TFI +++AC HGGLVD+G   
Sbjct: 342 RDAAAWTAIICGLATNGQASKALELFEEMQRSKTKPDGITFIGVLNACCHGGLVDEGRRH 401

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAE-WSVWGALLNACRIH 393
           F+AM  +Y+I P+++HY+C+V++ G AGLL EAE  IR+MP+  +   ++GALL AC+ +
Sbjct: 402 FQAMKEIYQIEPRIEHYSCLVNLLGHAGLLYEAEKLIRDMPVNNDTMPLFGALLTACKAY 461

Query: 394 RNDEMFDRI-----RQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
            N EM +R+     ++D      V+V    LMSN +A A RWE++ ++R ++    +KK 
Sbjct: 462 GNVEMSERLTKRIAKEDCSQNPDVNV----LMSNVYATASRWEESIRVRSKMTHPAVKKT 517

Query: 449 TGCSWIEVN 457
            GCS IEV 
Sbjct: 518 AGCSMIEVK 526



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 92/209 (44%), Gaps = 11/209 (5%)

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           MP R+      +I   A RG     ++V+ ++ + +    +  T   VL A   +     
Sbjct: 9   MPLRDC---NVLIRTLARRGSFARVMAVYYDL-RARGLVADSYTYPFVLRAIGVMKLSVE 64

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
           G+ VH+  + +          ++++ MY   G V  A +VF+ +  +  + W+ ++    
Sbjct: 65  GRKVHA-AAVKTGFRWDAYTASSLLEMYTMLGRVDFARKVFDEMPQRFLVLWNMMMRCYI 123

Query: 289 MNGCGR--QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 346
              CGR   A+ L   M  +   PD VT +  ++ACS  G +  G  +   M  V+    
Sbjct: 124 R--CGRFTAAVALAEEMERSGATPDRVTLVTAVTACSRAGDLSLGRRIRAYMDGVFGFSL 181

Query: 347 QMQHYACVVDMYGRAGLLEEAEAFIREMP 375
            + +   ++DMY + G LEEA    ++MP
Sbjct: 182 PVAN--ALLDMYTKNGYLEEAVKMFQQMP 208


>gi|356536685|ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Glycine max]
          Length = 723

 Score =  284 bits (727), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 161/493 (32%), Positives = 256/493 (51%), Gaps = 38/493 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML+     + YT+   LKAC  +      LE+H  +        +F+ N+L+  Y     
Sbjct: 173 MLNKKIEPDEYTYPSVLKACGESLDFNSGLEVHRSIEASSMEWSLFVHNALVSMYGRFGK 232

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID----------------- 103
           +  A  +F+++   D VSW TIIS  +  G  KEA  +F  +                  
Sbjct: 233 LEIARHLFDNMPRRDSVSWNTIISCYASRGIWKEAFQLFGSMQEEGVEMNVIIWNTIAGG 292

Query: 104 --------------------VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNI 143
                               +  +A  +V  L+ACS + + KLGK IH H++R   +   
Sbjct: 293 CLHSGNFRGALQLISQMRTSIHLDAIAMVVGLNACSHIGAIKLGKEIHGHAVRTCFDVFD 352

Query: 144 ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
            + NA++  Y RC  L     LF +  ++ +++W  M+ GYA     +E   +F+EM + 
Sbjct: 353 NVKNALITMYSRCRDLGHAFILFHRTEEKGLITWNAMLSGYAHMDRYEEVTFLFREMLQ- 411

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
           +  EPN  T+ +VL  C+ I+ L  GK  H YI          L+ NA+++MY + G V 
Sbjct: 412 EGMEPNYVTIASVLPLCARIANLQHGKEFHCYIMKHKQFEEYLLLWNALVDMYSRSGRVL 471

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
            A +VF+ L  +D+++++++I G  M G G   L+LF  M    + PD VT +A+++ACS
Sbjct: 472 EARKVFDSLTKRDEVTYTSMILGYGMKGEGETTLKLFEEMCKLEIKPDHVTMVAVLTACS 531

Query: 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 383
           H GLV QG +LFK M  V+ IVP+++HYAC+ D++GRAGLL +A+ FI  MP +   ++W
Sbjct: 532 HSGLVAQGQVLFKRMIDVHGIVPRLEHYACMADLFGRAGLLNKAKEFITGMPYKPTSAMW 591

Query: 384 GALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443
             LL ACRIH N EM +     L+  K    G + L++N +A A  W    ++R  +R +
Sbjct: 592 ATLLGACRIHGNTEMGEWAAGKLLEMKPDHSGYYVLIANMYAAAGSWRKLAEVRTYMRNL 651

Query: 444 GLKKKTGCSWIEV 456
           G++K  GC+W++V
Sbjct: 652 GVRKAPGCAWVDV 664



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 171/388 (44%), Gaps = 37/388 (9%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           L AC+      +  ++HA VI  G   +  + + L++FY  V  +  A  +  S    D 
Sbjct: 88  LLACTHFKSLSQGKQLHAQVISLGLDQNPILVSRLVNFYTNVNLLVDAQFVTESSNTLDP 147

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAH 133
           + W  +IS   + GF  EA+ ++  +    ++P+  T  SVL AC   +    G  +H  
Sbjct: 148 LHWNLLISAYVRNGFFVEALCVYKNMLNKKIEPDEYTYPSVLKACGESLDFNSGLEVHRS 207

Query: 134 SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
              +  E ++ + NA++  Y R G L    +LF  MP+R+ VSW T+I  YA RG  KEA
Sbjct: 208 IEASSMEWSLFVHNALVSMYGRFGKLEIARHLFDNMPRRDSVSWNTIISCYASRGIWKEA 267

Query: 194 VSVFQEMEKT---------------------------------KEAEPNEATLVNVLSAC 220
             +F  M++                                       +   +V  L+AC
Sbjct: 268 FQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGALQLISQMRTSIHLDAIAMVVGLNAC 327

Query: 221 SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
           S I A+  GK +H + + R    V + V NA+I MY +C D+G A  +F+    K  I+W
Sbjct: 328 SHIGAIKLGKEIHGH-AVRTCFDVFDNVKNALITMYSRCRDLGHAFILFHRTEEKGLITW 386

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340
           + ++SG A      +   LF  M+   + P+ VT  +++  C+    +  G      +  
Sbjct: 387 NAMLSGYAHMDRYEEVTFLFREMLQEGMEPNYVTIASVLPLCARIANLQHGKEFHCYIMK 446

Query: 341 VYEIVPQMQHYACVVDMYGRAGLLEEAE 368
             +    +  +  +VDMY R+G + EA 
Sbjct: 447 HKQFEEYLLLWNALVDMYSRSGRVLEAR 474



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 108/228 (47%), Gaps = 2/228 (0%)

Query: 113 SVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKR 172
           S+L AC+   S   GK +HA  +    + N IL + +++FY     L    ++       
Sbjct: 86  SLLLACTHFKSLSQGKQLHAQVISLGLDQNPILVSRLVNFYTNVNLLVDAQFVTESSNTL 145

Query: 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYV 232
           + + W  +I  Y   GF  EA+ V++ M   K+ EP+E T  +VL AC      + G  V
Sbjct: 146 DPLHWNLLISAYVRNGFFVEALCVYKNM-LNKKIEPDEYTYPSVLKACGESLDFNSGLEV 204

Query: 233 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
           H  I     +  S  V NA+++MY + G + IA  +F+ +  +D +SW+T+IS  A  G 
Sbjct: 205 HRSIEAS-SMEWSLFVHNALVSMYGRFGKLEIARHLFDNMPRRDSVSWNTIISCYASRGI 263

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340
            ++A QLF  M    V  + + +  +   C H G     L L   M T
Sbjct: 264 WKEAFQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGALQLISQMRT 311



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 8/164 (4%)

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCG---DVGIAIQVFNM 271
           ++L AC+   +LS GK +H+ + +   L  + ++ + ++N Y       D     +  N 
Sbjct: 86  SLLLACTHFKSLSQGKQLHAQVIS-LGLDQNPILVSRLVNFYTNVNLLVDAQFVTESSNT 144

Query: 272 LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
           L   D + W+ +IS    NG   +AL ++  M+   + PD+ T+ +++ AC      + G
Sbjct: 145 L---DPLHWNLLISAYVRNGFFVEALCVYKNMLNKKIEPDEYTYPSVLKACGESLDFNSG 201

Query: 332 LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP 375
           L + +++           H A +V MYGR G LE A      MP
Sbjct: 202 LEVHRSIEASSMEWSLFVHNA-LVSMYGRFGKLEIARHLFDNMP 244


>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
 gi|194696634|gb|ACF82401.1| unknown [Zea mays]
          Length = 615

 Score =  284 bits (726), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 163/452 (36%), Positives = 260/452 (57%), Gaps = 19/452 (4%)

Query: 11  YTF-TQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN 69
           Y+F  +AL A  L  P + A   HAHV++ G   D F+ N+L+  Y   + +  A ++F+
Sbjct: 133 YSFLIKALAAAGLT-PVRGA---HAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFD 188

Query: 70  SVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLV--SVLSACSSLVSHKLG 127
            +   DVVSW T ++ + + G    A  MF   D  P  +T+   ++L   +     K G
Sbjct: 189 EMTTRDVVSWNTAMAAMVRQGEVDAARSMF---DEMPEKDTVSWNTMLDGYA-----KAG 240

Query: 128 KAIHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           +A  A  L + +   N++  + ++  Y + G +     +F KMP +N+V+WT M+   A+
Sbjct: 241 EAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQ 300

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
           +G  +EA  +F EM      E +   +V++L+AC+   +L+ GK +H ++  R  LS S 
Sbjct: 301 KGLVEEAGRLFTEMMDAA-IELDVIAVVSILAACAESGSLALGKRIHRHVRQR-KLSRST 358

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNM-LAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
           LV NA+++M+ KCG V  A  +F+  +  KD +SW+ +I G AM+G G +AL+LF+ M  
Sbjct: 359 LVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQ 418

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
               PD VT I ++SAC+H GLV++G   F  M T Y I PQ++HY C+VD+ GR GL++
Sbjct: 419 QGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIK 478

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EA   I+ MP E    +WG+LL+ACR+H+N E  +    +L N +  S G +A++SN +A
Sbjct: 479 EAVDMIKRMPWEPNEVIWGSLLSACRLHKNVEYAELAVNELSNLQPSSAGNYAVLSNIYA 538

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            A +W D  K R +++  G +K  G SWIE+N
Sbjct: 539 EAGKWSDMAKARVQMKGTGSQKTAGSSWIELN 570



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 78/398 (19%), Positives = 172/398 (43%), Gaps = 27/398 (6%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV------FPD--VVSWTTI 82
           E+HA +++ G   D    + L+  Y  ++ + +   +F++ V      FP    +   T+
Sbjct: 44  ELHAQLLKQGLHRDPHTASKLIASYALLRRVPACRCVFSAAVALPNSPFPSSTTLLTKTL 103

Query: 83  ISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN 142
           +   +       A+ +F  + ++       S L    +       +  HAH ++  +  +
Sbjct: 104 LRAYALNSLPHAALAVFLDVPLRQRGTFTYSFLIKALAAAGLTPVRGAHAHVVKLGSAED 163

Query: 143 IILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202
             + NA++D Y +   L+    +F +M  R+VVSW T +     +G    A S+F EM  
Sbjct: 164 TFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEM-- 221

Query: 203 TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 262
               E +  +   +L   +          +   +  R  +S S      V++ Y K GD+
Sbjct: 222 ---PEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWST-----VVSAYCKKGDM 273

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
            +A  +F+ +  K+ ++W+ ++S  A  G   +A +LF+ M+  A+  D +  +++++AC
Sbjct: 274 EMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAAC 333

Query: 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEW 380
           +  G +  G  + +    V +         C  ++DM+ + G +  A+       +E + 
Sbjct: 334 AESGSLALGKRIHR---HVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDL 390

Query: 381 SVWGALLNACRIH----RNDEMFDRIRQDLVNKKGVSV 414
             W  ++    +H    +  E+F +++Q   +   V++
Sbjct: 391 VSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTL 428


>gi|326507168|dbj|BAJ95661.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  284 bits (726), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 165/459 (35%), Positives = 257/459 (55%), Gaps = 17/459 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           ++Y+ + AL   +         ++HA  ++ G   D F+ N+L++ Y +     +A  + 
Sbjct: 92  DNYSLSAALSTAARMPSVVVGAQLHALSVKLGLSSDTFVLNTLINMYSSCSYPSTARSVL 151

Query: 69  NSVV--FPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVS 123
           +S      D VSW TII+G    G   +A+  F  +    V  +  TL++ L AC+    
Sbjct: 152 DSAPKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCM 211

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            K+GK  HA  + N  E N  + ++++  Y +CG +     +F  MP RN V WT+MI G
Sbjct: 212 MKVGKLCHALLVTNGFEINCYMGSSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISG 271

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           Y + G  KEA+ +F++M+     + ++AT+  V+S+C  + AL  G+YVH+Y    + L 
Sbjct: 272 YTQLGQSKEAIKLFRDMQ-IAGVKVDDATISTVVSSCGQMGALDLGRYVHAYCDI-HGLG 329

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
               V N++I+MY KCGD+  A  +F  +  +D  SW TVI G A NG   +AL LF+ M
Sbjct: 330 KDISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNFSW-TVIMGFAANGLSGEALDLFAQM 388

Query: 304 II-NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
                V P+++TF+ ++++CSHGGLV+QG   F  MS++Y I P+++HY C+VD+ GRA 
Sbjct: 389 EEEGGVMPNEITFLGVLTSCSHGGLVEQGYRHFHRMSSIYGIAPRIEHYGCMVDLLGRAK 448

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACR----IHRNDEMFDRIRQDLVNKKGVSVGTFA 418
           LL EAE FI+EMPI  +  +W +LL ACR    +   + + +RI+    NK G  V    
Sbjct: 449 LLAEAEQFIKEMPIAPDAVMWRSLLFACRTCGEVGLAEYVAERIQVLEPNKCGGDV---- 504

Query: 419 LMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           L+S  +A   RW D NK+R  I      K+ GCS+IEV+
Sbjct: 505 LLSTVYATTSRWVDANKVRTGIYSGRKTKQPGCSFIEVD 543


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  284 bits (726), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 158/464 (34%), Positives = 247/464 (53%), Gaps = 41/464 (8%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ--IFNSVVFPDVVSWTTIISGLSK 88
           ++HAH+I  G     ++   L+     V     ++   +F  V +P+   WT +I G + 
Sbjct: 60  QVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYAL 119

Query: 89  CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHS-LRNLNENNII 144
            G   E+ + +  +    V P + T  ++  AC + ++  LGK +HA + L     +++ 
Sbjct: 120 QGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLY 179

Query: 145 LDNAILDFYIRCGSLA-------------------------------SCGYLFVKMPKRN 173
           + N+++D Y++CG L                                S   LF  +P ++
Sbjct: 180 VGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKD 239

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
           +V+WT M+ GYA+ G  KEA+  FQ+M+     E +E TL  V+SAC+ + A+    ++ 
Sbjct: 240 MVAWTAMVTGYAQNGRPKEALEYFQKMQDVG-METDEVTLAGVISACAQLGAVKHANWIR 298

Query: 234 SYISTRYDLSVSN--LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNG 291
             I+ R     S   +VG+A+I+MY KCG    A +VF ++  ++  S+S++I G AM+G
Sbjct: 299 D-IAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHG 357

Query: 292 CGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY 351
               ALQLF  M+   + P+ VTFI ++SACSH GLV+QG  LF  M   + + P   HY
Sbjct: 358 RAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHY 417

Query: 352 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKG 411
           AC+VD+ GRAG LEEA   ++ MP+E    VWGALL ACRIH N ++      +L   + 
Sbjct: 418 ACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEP 477

Query: 412 VSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
             +G + L+SN +A A RWE+ +K+R  IR  G KK  GCSW E
Sbjct: 478 NGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFE 521



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 180/409 (44%), Gaps = 89/409 (21%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHL-HDIFIQNSLLHFYVTV----------- 58
           +TF+   KAC  A       ++HA  I  G    D+++ NS++  YV             
Sbjct: 143 FTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFD 202

Query: 59  --------------------KDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDM 98
                                D+ SA  +F+ +   D+V+WT +++G ++ G  KEA++ 
Sbjct: 203 EMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEY 262

Query: 99  F---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNE-------NNIILDNA 148
           F     + ++ +  TL  V+SAC+     +LG   HA+ +R++ E        N+++ +A
Sbjct: 263 FQKMQDVGMETDEVTLAGVISACA-----QLGAVKHANWIRDIAERSGFGPSGNVVVGSA 317

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
           ++D Y +CGS      +F  M +RNV S+++MI GYA  G    A+ +F +M KT E  P
Sbjct: 318 LIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKT-EIRP 376

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           N+ T + +LSACS    +  G+ + + +   + ++ S                       
Sbjct: 377 NKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPS----------------------- 413

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
                      ++ ++  L   GC  +AL L   M +    P+   + AL+ AC   G  
Sbjct: 414 --------PDHYACMVDLLGRAGCLEEALDLVKTMPME---PNGGVWGALLGACRIHGNP 462

Query: 329 DQGLILFKAMSTVYEIVPQ-MQHYACVVDMYGRAGLLEEAEAF---IRE 373
           D   I   A + ++++ P  + +Y  + ++Y  AG  EE       IRE
Sbjct: 463 DIAQI---AANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIRE 508


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  283 bits (725), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 166/479 (34%), Positives = 262/479 (54%), Gaps = 48/479 (10%)

Query: 18  KACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 77
           K+ S+AH     L+IHA ++  G  H+  +   L   Y  +  +  +  +FN+   P+V 
Sbjct: 56  KSKSVAH----LLQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVF 111

Query: 78  SWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHA 132
           S++ II    +      A   +     CG  V+PNA T  SVL +CS     + GK +H 
Sbjct: 112 SFSAIIHSHVQSRLFDRAFGYYSQMLSCG--VEPNAFTFSSVLKSCSL----ESGKVLHC 165

Query: 133 HSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS---------------- 176
            +++    +++ +   ++D Y R G +     LF KMP+R++VS                
Sbjct: 166 QAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDK 225

Query: 177 ---------------WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221
                          W  MIGGYA+ G   E++ +F+ M   K A PNE T++ VLSAC 
Sbjct: 226 ARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAK-AIPNEVTVLAVLSACG 284

Query: 222 SISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWS 281
            + AL  G+++HSYI  +  + ++  VG A+I+MY KCG +  A  VF+ +  KD ++W+
Sbjct: 285 QLGALESGRWIHSYIENK-GIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWN 343

Query: 282 TVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 341
           ++I G AM+G  + ALQLF  M      P D+TFI ++SAC HGGLV++G   F+ M   
Sbjct: 344 SMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDK 403

Query: 342 YEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDR 401
           Y I P+++HY C+V++ GRAG LEEA   ++ M I A+  +WG LL  CR+H N ++ + 
Sbjct: 404 YGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEE 463

Query: 402 IRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           I + LV++K  + GT+ L+SN +A    WE   K+R  ++  G++K+ GCS IEV+  +
Sbjct: 464 IAKFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKV 522



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 155/329 (47%), Gaps = 46/329 (13%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           MLSC    N +TF+  LK+CSL    +    +H   I+ G   D++++  L+  Y    D
Sbjct: 136 MLSCGVEPNAFTFSSVLKSCSL----ESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGD 191

Query: 61  IFSAHQIFNSV--------------------------VFP-----DVVSWTTIISGLSKC 89
           +  A Q+F+ +                          +F      DVV W  +I G ++ 
Sbjct: 192 VVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQS 251

Query: 90  GFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
           G   E++ +F  + V    PN  T+++VLSAC  L + + G+ IH++      + N+ + 
Sbjct: 252 GVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVG 311

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
            A++D Y +CGSL     +F ++  ++VV+W +MI GYA  GF + A+ +F+EM +T   
Sbjct: 312 TALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGH- 370

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
           +P + T + +LSAC     +  G+     +  +Y +         ++N+  + G +  A 
Sbjct: 371 KPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAY 430

Query: 267 Q-VFNMLAYKDKISWSTVISGLAMNGCGR 294
             V NM    D + W T++      GC R
Sbjct: 431 GLVKNMTIAADPVLWGTLL------GCCR 453


>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 608

 Score =  283 bits (725), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 154/434 (35%), Positives = 250/434 (57%), Gaps = 14/434 (3%)

Query: 33  HAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFH 92
           H+ V +     D    +SL+  Y     +  A ++F+ +   D+VSW ++I+G +K G  
Sbjct: 139 HSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCA 198

Query: 93  KEAIDMFCGIDVK----PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148
           +EA+++F  +  +    P+  +LVSVL AC  L   +LG+ +    +      N  + +A
Sbjct: 199 REAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLNSYIGSA 258

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
           ++  Y +CG L S   +F  M  R+V++W  +I GYA+ G   EA+S+F  M++    E 
Sbjct: 259 LISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKEDCVTE- 317

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTR---YDLSVSNLVGNAVINMYVKCGDVGIA 265
           N+ TL  VLSAC++I AL  GK +  Y S R   +D+     V  A+I+MY KCG +  A
Sbjct: 318 NKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDI----FVATALIDMYAKCGSLASA 373

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA--VFPDDVTFIALISACS 323
            +VF  +  K++ SW+ +IS LA +G  ++AL LF  M        P+D+TF+ L+SAC 
Sbjct: 374 QRVFKEMPQKNEASWNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSACV 433

Query: 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 383
           H GLV++G  LF  MST++ +VP+++HY+C+VD+  RAG L EA   I +MP + +    
Sbjct: 434 HAGLVNEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIEKMPEKPDKVTL 493

Query: 384 GALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443
           GALL ACR  +N ++ +R+ + ++     + G + + S  +A  + WED+ ++R  +R+ 
Sbjct: 494 GALLGACRSKKNVDIGERVIRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQK 553

Query: 444 GLKKKTGCSWIEVN 457
           G+ K  GCSWIEV 
Sbjct: 554 GITKTPGCSWIEVE 567


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  283 bits (725), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 149/493 (30%), Positives = 271/493 (54%), Gaps = 44/493 (8%)

Query: 4   CPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFY-------- 55
           CP   +H  F   LK+C++    +    +H  ++  G   D++  N+L++ Y        
Sbjct: 102 CP---DHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGS 158

Query: 56  -VTVKDIF---------------------------SAHQIFNSVVFPDVVSWTTIISGLS 87
            ++V ++F                           S  ++F  +   DVVS+ TII+G +
Sbjct: 159 KISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYA 218

Query: 88  KCGFHKEAIDM---FCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
           + G +++A+ M       D+KP++ TL SVL   S  V    GK IH + +R   ++++ 
Sbjct: 219 QSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVY 278

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           + ++++D Y +   +     +F ++  R+ +SW +++ GY + G   EA+ +F++M  T 
Sbjct: 279 IGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQM-VTA 337

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
           + +P      +V+ AC+ ++ L  GK +H Y+  R     +  + +A+++MY KCG++  
Sbjct: 338 KVKPGAVAFSSVIPACAHLATLHLGKQLHGYV-LRGGFGSNIFIASALVDMYSKCGNIKA 396

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
           A ++F+ +   D++SW+ +I G A++G G +A+ LF  M    V P+ V F+A+++ACSH
Sbjct: 397 ARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSH 456

Query: 325 GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 384
            GLVD+    F +M+ VY +  +++HYA V D+ GRAG LEEA  FI +M +E   SVW 
Sbjct: 457 VGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWS 516

Query: 385 ALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444
            LL++C +H+N E+ +++ + +      ++G + LM N +A   RW++  K+R  +R+ G
Sbjct: 517 TLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKG 576

Query: 445 LKKKTGCSWIEVN 457
           L+KK  CSWIE+ 
Sbjct: 577 LRKKPACSWIEMK 589



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 174/370 (47%), Gaps = 53/370 (14%)

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSH 124
           F ++  P V++W ++I   +      +A+  F  +      P+ N   SVL +C+ ++  
Sbjct: 62  FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRC---GSLASCGYLFVKMPKR--------- 172
           + G+++H   +R   + ++   NA+++ Y +    GS  S G +F +MP+R         
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDV 181

Query: 173 ------------------------NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
                                   +VVS+ T+I GYA+ G  ++A+ + +EM  T + +P
Sbjct: 182 KAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREM-GTTDLKP 240

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           +  TL +VL   S    +  GK +H Y+  R  +     +G+++++MY K   +  + +V
Sbjct: 241 DSFTLSSVLPIFSEYVDVIKGKEIHGYV-IRKGIDSDVYIGSSLVDMYAKSARIEDSERV 299

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F+ L  +D ISW+++++G   NG   +AL+LF  M+   V P  V F ++I AC+H   +
Sbjct: 300 FSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATL 359

Query: 329 D-----QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 383
                  G +L     +   I       + +VDMY + G ++ A      M +  E S W
Sbjct: 360 HLGKQLHGYVLRGGFGSNIFIA------SALVDMYSKCGNIKAARKIFDRMNVLDEVS-W 412

Query: 384 GALLNACRIH 393
            A++    +H
Sbjct: 413 TAIIMGHALH 422



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 122/291 (41%), Gaps = 50/291 (17%)

Query: 119 SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWT 178
           + + S    K +HA  +R  + ++    + ++  Y     L     LF  +    V++W 
Sbjct: 16  TRIKSKSQAKQLHAQFIRTQSLSHTSA-SIVISIYTNLKLLHEALLLFKTLKSPPVLAWK 74

Query: 179 TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST 238
           ++I  + ++    +A++ F EM  +    P+     +VL +C+ +  L FG+ VH +I  
Sbjct: 75  SVIRCFTDQSLFSKALASFVEMRASGRC-PDHNVFPSVLKSCTMMMDLRFGESVHGFI-V 132

Query: 239 RYDLSVSNLVGNAVINMYVKCGDVGIAI-------------------------------- 266
           R  +      GNA++NMY K   +G  I                                
Sbjct: 133 RLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGI 192

Query: 267 ----QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
               +VF ++  KD +S++T+I+G A +G    AL++   M    + PD  T  +++   
Sbjct: 193 DSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIF 252

Query: 323 SH-----GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
           S       G    G ++ K + +   I       + +VDMY ++  +E++E
Sbjct: 253 SEYVDVIKGKEIHGYVIRKGIDSDVYI------GSSLVDMYAKSARIEDSE 297


>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 553

 Score =  283 bits (725), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 157/476 (32%), Positives = 251/476 (52%), Gaps = 46/476 (9%)

Query: 27  QKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGL 86
           +K  +IH  +I  G     F+   LL FY+T  ++ +AH++F  +  P    W  +I G 
Sbjct: 32  KKLKQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGH 91

Query: 87  SKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAH---------- 133
           S+     + ++++  +   + +PN  T   ++  C+     + G+ +H            
Sbjct: 92  SQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANGYCTNV 151

Query: 134 ----SLRNLN--------------------ENNIILDNAILDFYIRCGSLASCGYLFVKM 169
               SL NL                     + NI+  N++L  Y+RCG +     +F +M
Sbjct: 152 FVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEM 211

Query: 170 PKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 229
           P+RNVVSWTTMI G A+ G CK+A+ +F EM +    + ++  LV  LSAC+ +  L  G
Sbjct: 212 PERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAG-VKLDQVALVAALSACAELGDLKLG 270

Query: 230 KYVHSYISTRYDLSVSNLV---GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
            ++HSYI  R       L+    N++I+MY  CG +  A +VF  +  +  ISW+++I+G
Sbjct: 271 TWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITG 330

Query: 287 LAMNGCGRQALQLFSLMI---INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 343
            A  G   +AL +F  M     +   PD +TFI ++ ACSH G VDQG   F+ M+  + 
Sbjct: 331 FAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWG 390

Query: 344 IVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIR 403
           IVP+++HY C+VD+  RAG L+EA   I  MP++   +VWGALL  CRIH+N E+   + 
Sbjct: 391 IVPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGALLGGCRIHKNAELASHVA 450

Query: 404 QDLV--NKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           Q L    K   + G   L+SN +A A RW+D   +R ++  +G++K  G SW+++N
Sbjct: 451 QKLALELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSWVQIN 506



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 144/285 (50%), Gaps = 43/285 (15%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHF------ 54
           M+   +  N +T++  +  C+ +   ++  ++H  V+  G+  ++F++ SL++       
Sbjct: 107 MVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGG 166

Query: 55  ----------------------------YVTVKDIFSAHQIFNSVVFPDVVSWTTIISGL 86
                                       YV   D+  A +IF+ +   +VVSWTT+I+G 
Sbjct: 167 YDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGC 226

Query: 87  SKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN- 142
           ++ G  K+A+ +F  +    VK +   LV+ LSAC+ L   KLG  IH++    L+  N 
Sbjct: 227 AQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQ 286

Query: 143 ---IILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQE 199
              + L+N+++  Y  CG +     +F+ M +R+ +SWT+MI G+A++G  +EA+ VFQ 
Sbjct: 287 PLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQW 346

Query: 200 MEK--TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
           M++  T E  P+  T + VL ACS    +  G++    ++ ++ +
Sbjct: 347 MQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGI 391



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 118/253 (46%), Gaps = 39/253 (15%)

Query: 113 SVLSACSSLVSHKLGKAIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYLFVKMPK 171
           S+L  C ++   K  K IH   + N  ++ N +L   +L FYI  G+L +   +F ++  
Sbjct: 23  SLLQTCDTI---KKLKQIHTQIIVNGFSQKNFLLVK-LLSFYITSGNLLNAHKVFERIEN 78

Query: 172 RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKY 231
            +   W  MI G+++     + V ++  M +  EAEPNE T   ++  C+    L  G+ 
Sbjct: 79  PSTTVWNQMIRGHSQSETPHKLVELYNRMVEA-EAEPNEFTYSFLIGGCARSRLLREGEQ 137

Query: 232 VHSY---------------------ISTRYD-----------LSVSNLVG-NAVINMYVK 258
           VH                       I+  YD           +   N+V  N+++  YV+
Sbjct: 138 VHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVR 197

Query: 259 CGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIAL 318
           CGDV  A ++F+ +  ++ +SW+T+I+G A  G  +QAL LF  M    V  D V  +A 
Sbjct: 198 CGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAA 257

Query: 319 ISACSHGGLVDQG 331
           +SAC+  G +  G
Sbjct: 258 LSACAELGDLKLG 270


>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
 gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
          Length = 693

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 154/456 (33%), Positives = 257/456 (56%), Gaps = 6/456 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  TFT  + +C+     ++  E+H  +IE   L D F+ ++L+  Y     +  A ++F
Sbjct: 206 NSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAFVLSALVDMYGKCGCLEMAKEVF 265

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   + ++W  +I+G S  G  +  I++   ++    KP   TL S++ A S  V  +
Sbjct: 266 EKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGTKPTLMTLTSIIYASSRSVQLR 325

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK IH + LRN  + +I +D +++DFY +CG ++S   +F  + K  VVSW  MI G+ 
Sbjct: 326 HGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSAETIFRTISKNEVVSWNVMISGHV 385

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G   +A+ ++  M K    +P+  T  + LSACS ++AL  G+ +H Y    + L  +
Sbjct: 386 MVGNHIQALHIYDNM-KEHHVKPDALTFSSTLSACSQLAALDKGRELH-YCIINHKLEAN 443

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
            +V  A+++MY KCGDV  A ++F+ L  +D +SW+++I     +G   +AL+LF  M  
Sbjct: 444 EIVMGALLDMYAKCGDVDEARKLFHQLPKRDLVSWTSMIFAYGSHGQASEALRLFDEMQK 503

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             V  D VTF+A++SACSH GLVD+G + F  M   Y+I P ++HY+C++D+ GRAG L 
Sbjct: 504 LNVRADSVTFLAVLSACSHAGLVDEGYMYFNEMVVQYDIKPGIEHYSCLIDLLGRAGRLH 563

Query: 366 EA-EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           EA E   R     ++  +   L +AC +H N  +  +I + L+        T+ L+SN +
Sbjct: 564 EAYEILQRSKETRSDIGLLSTLFSACLLHNNFVLGIQIGKMLIEVDPDDPSTYILLSNMY 623

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           A  ++W++  K+R +++ +GLKK  GCSWIE+N  I
Sbjct: 624 ASVNKWDEVRKVRRKMKELGLKKSPGCSWIEINQRI 659



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 184/392 (46%), Gaps = 21/392 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           ++ T   AL+ C+ +   ++   IH  +   G   +I +  SL+ FY +  D  SA  +F
Sbjct: 2   DYVTLLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVF 61

Query: 69  NSVVFP-DVVSWTTIISGLSKCGFHKEAIDMF----CGIDVKPNANTLVSVLSACSSLVS 123
            +   P DV  W  ++S  +      EA+ +F    C   V+P+  T   VL AC  L  
Sbjct: 62  QTNDCPLDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGR 121

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
              G+ IH H L+     ++ + +++++ Y +C        LF + P+R+V  W  +I  
Sbjct: 122 VIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISC 181

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           Y + G  + A+  F +M K    EPN  T   V+S+C+ +  L  GK VH  +  R  L 
Sbjct: 182 YFKDGKAEMALKTFDKM-KELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRIL- 239

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           +   V +A+++MY KCG + +A +VF  +  K+ I+W+ +I+G ++ G  R  ++L   M
Sbjct: 240 LDAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRM 299

Query: 304 IINAVFPDDVTFIALISACS------HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
                 P  +T  ++I A S      HG  +  G IL   +    +I   +     ++D 
Sbjct: 300 NDEGTKPTLMTLTSIIYASSRSVQLRHGKFI-HGYILRNRIDV--DIFIDVS----LIDF 352

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           Y + G +  AE   R +  + E   W  +++ 
Sbjct: 353 YFKCGYVSSAETIFRTIS-KNEVVSWNVMISG 383


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 167/482 (34%), Positives = 254/482 (52%), Gaps = 57/482 (11%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTV----KDIFSAHQIFNSVVFPDVVSWTTIISGL 86
           +IHA  I+ G + D      +L F  T     +D+  AH+IFN +   +  SW TII G 
Sbjct: 41  QIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGF 100

Query: 87  SKCGFHKEAI------DMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSL----- 135
           S+    K  I      +M     V+PN  T  SVL AC+     + GK IH  +L     
Sbjct: 101 SESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFG 160

Query: 136 ----------------------------------------RNLNENNIILDNAILDFYIR 155
                                                   R   +  I+L N ++D Y+R
Sbjct: 161 GDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMR 220

Query: 156 CGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVN 215
            G   +   LF KM +R+VVSW TMI GY+  GF K+AV VF+EM+K  +  PN  TLV+
Sbjct: 221 LGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKG-DIRPNYVTLVS 279

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           VL A S + +L  G+++H Y +    + + +++G+A+I+MY KCG +  AI VF  L  +
Sbjct: 280 VLPAISRLGSLELGEWLHLY-AEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRE 338

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILF 335
           + I+WS +I+G A++G    A+  F  M    V P DV +I L++ACSHGGLV++G   F
Sbjct: 339 NVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYF 398

Query: 336 KAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN 395
             M +V  + P+++HY C+VD+ GR+GLL+EAE FI  MPI+ +  +W ALL ACR+  N
Sbjct: 399 SQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGN 458

Query: 396 DEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
            EM  R+   L++      G +  +SN +A    W + +++R  ++   ++K  GCS I+
Sbjct: 459 VEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLID 518

Query: 456 VN 457
           ++
Sbjct: 519 ID 520



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 101/405 (24%), Positives = 176/405 (43%), Gaps = 91/405 (22%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYV------------ 56
           N +TF   LKAC+     Q+  +IH   ++YG   D F+ ++L+  YV            
Sbjct: 127 NRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLF 186

Query: 57  ---------------------------------TVKDIFSAHQIFNSVVFPDVVSWTTII 83
                                             + D  +A  +F+ +    VVSW T+I
Sbjct: 187 YKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMI 246

Query: 84  SGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNE 140
           SG S  GF K+A+++F  +   D++PN  TLVSVL A S L S +LG+ +H ++  +   
Sbjct: 247 SGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIR 306

Query: 141 NNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEM 200
            + +L +A++D Y +CG +    ++F ++P+ NV++W+ MI G+A  G   +A+  F +M
Sbjct: 307 IDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKM 366

Query: 201 EKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCG 260
            +     P++   +N+L+ACS    +  G+        RY                    
Sbjct: 367 RQAG-VRPSDVAYINLLTACSHGGLVEEGR--------RY-------------------- 397

Query: 261 DVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL--QLFSLMIINAVFPDDVTFIAL 318
                   F+ +   D +       G  ++  GR  L  +    ++   + PDDV + AL
Sbjct: 398 --------FSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKAL 449

Query: 319 ISACSHGGLVDQGLILFKAMSTVYEIVPQMQ-HYACVVDMYGRAG 362
           + AC   G V+ G    +  + + ++VP     Y  + +MY   G
Sbjct: 450 LGACRMQGNVEMGK---RVANILMDMVPHDSGAYVALSNMYASQG 491


>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
          Length = 461

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 155/445 (34%), Positives = 248/445 (55%), Gaps = 9/445 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           NHYTF   +K C          +IHA ++++G   D+F++NSL+H Y     I  A  +F
Sbjct: 9   NHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAMF 68

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
                 D+V+W ++I G  K G    A ++F   +  P  + L S  S  +  V +  G 
Sbjct: 69  EVCSISDLVTWNSMIDGYVKNGEIGAARELF---EEMPERD-LFSWNSMIAGYVGN--GD 122

Query: 129 AIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
              A  L N +   +I+  N ++D Y +  ++     LF  MP RNVVSW  M+  Y   
Sbjct: 123 MTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRI 182

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
               E + +F +M    E  PNEATLV+VL+AC+ +  L  GK++HSYI     +    L
Sbjct: 183 KDYDECLRMFDKM--MGETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVL 240

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           +  A++ MY KCG + +A  VF+ ++ +  +SW+++I G  M+G   +AL++F  M    
Sbjct: 241 LSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRG 300

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
             P+D TFI ++SAC+H G++ +G   F  M   Y+I P+++HY C+VD+ GRAGL+++ 
Sbjct: 301 PMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDL 360

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
           E  IR+MP+E   ++WGALL+ACR H N E+ + + + L+  +   +G + L+SN +A  
Sbjct: 361 EELIRKMPMEGGTALWGALLSACRTHSNSELAEIVAKRLIELEPRDIGPYLLLSNIYAAE 420

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCS 452
            +W+D   +R  ++  GL K TG S
Sbjct: 421 GKWDDVEIVRKMMKERGLTKTTGLS 445



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 124/271 (45%), Gaps = 11/271 (4%)

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCG 163
           V PN  T   ++  C  + S   G+ IHA  L+   E ++ + N+++  Y  CG +    
Sbjct: 6   VAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDAR 65

Query: 164 YLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI 223
            +F      ++V+W +MI GY + G    A  +F+EM +      N      V +   + 
Sbjct: 66  AMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYVGNGDMTA 125

Query: 224 SALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTV 283
           +   F K     I +           N +I+ Y +  ++ IA ++FN + Y++ +SW+ +
Sbjct: 126 AEDLFNKMPFRDIVS----------WNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIM 175

Query: 284 ISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 343
           ++         + L++F  M +    P++ T +++++AC+H G +D+G  +   +     
Sbjct: 176 LALYVRIKDYDECLRMFDKM-MGETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRV 234

Query: 344 IVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
           I P +     ++ MY + G ++ A     +M
Sbjct: 235 IEPDVLLSTALLTMYAKCGAMDLARDVFDKM 265



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 93/200 (46%), Gaps = 17/200 (8%)

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
           PN  T   ++  C  I ++  G+ +H+ I  ++   +   V N++I+MY  CG +G A  
Sbjct: 8   PNHYTFPLLVKVCWEIGSIGDGEKIHARI-LKFGFELDLFVRNSLIHMYSVCGRIGDARA 66

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           +F + +  D ++W+++I G   NG    A +LF  M    +F    ++ ++I+     G 
Sbjct: 67  MFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLF----SWNSMIAGYVGNGD 122

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIE--AEWSVWGA 385
           +     LF  M    +IV     + C++D Y +   +E A      MP      W++  A
Sbjct: 123 MTAAEDLFNKMP-FRDIV----SWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLA 177

Query: 386 LLNACRIHRNDE---MFDRI 402
           L    RI   DE   MFD++
Sbjct: 178 LY--VRIKDYDECLRMFDKM 195


>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 658

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 166/483 (34%), Positives = 265/483 (54%), Gaps = 44/483 (9%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV-KDIFSAHQI 67
           N +TFT  LK    +   +    IH  +++ G    +F+QNSLL FY    +++ SA+++
Sbjct: 73  NSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNSLLGFYANCSENLGSAYRV 132

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN--TLVSVLSACSSLVSHK 125
           F  +   DV+SW ++IS     G  + AI +   +D  P  N  T  SV+   S     K
Sbjct: 133 FEEMPERDVISWNSMISAYMTRGEIQSAIGL---LDKMPERNIVTWNSVVCGLS-----K 184

Query: 126 LGKAIHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
            G    AHS+   +   N +  N+++  Y+R G + +   +F +MP++ VVSWT MI GY
Sbjct: 185 AGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMISGY 244

Query: 185 AERGFCK-------------------------------EAVSVFQEMEKTKEAEPNEATL 213
           A  G  K                               +A+ VF  M    E  P++ TL
Sbjct: 245 ATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTL 304

Query: 214 VNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 273
           +++LSAC+ + +L  GK+++SYI  +  L +S  +GNA+I+M+ KCGDV  A +VF+ ++
Sbjct: 305 ISILSACAHLGSLEHGKWINSYIK-KNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMS 363

Query: 274 YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI 333
            +  I+W+T++SGLA+NG  R+A+ LF  M +    PDDV FIA++SAC+HGGLV++G  
Sbjct: 364 KRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEGKR 423

Query: 334 LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           +F  M   + I P+++HY C+VD+ GRAG LEEA  F   M ++    +W  LL  C+IH
Sbjct: 424 VFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEAVRFTARMHLKPNAVIWATLLFCCKIH 483

Query: 394 RNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSW 453
            N ++   + + +++++  +     L+SN  A   RWED    R  +R+  ++K  GCS 
Sbjct: 484 GNGDLLKSVTEKIMDQEPSNPSYLTLVSNLSASFGRWEDVLSFRVAMRQQRMEKVPGCSS 543

Query: 454 IEV 456
           I+V
Sbjct: 544 IQV 546



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 148/316 (46%), Gaps = 41/316 (12%)

Query: 92  HKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148
           HKEA+ ++  +    V+ N+ T   +L    +  + + G+ IH   L+    +++ + N+
Sbjct: 55  HKEALRVYSRMKALMVEANSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNS 114

Query: 149 ILDFYIRCG-SLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           +L FY  C  +L S   +F +MP+R+V+SW +MI  Y  RG  + A+ +  +M      E
Sbjct: 115 LLGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKM-----PE 169

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG------------------ 249
            N  T  +V+   S    +     V   +  R ++S ++++                   
Sbjct: 170 RNIVTWNSVVCGLSKAGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIFYQM 229

Query: 250 --------NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
                    A+I+ Y   GD+  A  +FN +  K+ +SW+ +ISG   N    QAL +F 
Sbjct: 230 PEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFH 289

Query: 302 LMIINA-VFPDDVTFIALISACSHGGLVDQGLIL--FKAMSTVYEIVPQMQHYACVVDMY 358
            M+IN    PD  T I+++SAC+H G ++ G  +  +   + ++  +P       ++DM+
Sbjct: 290 HMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGN---ALIDMF 346

Query: 359 GRAGLLEEAEAFIREM 374
            + G +E A+     M
Sbjct: 347 AKCGDVENAKEVFHHM 362


>gi|356567222|ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Glycine max]
          Length = 887

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 155/427 (36%), Positives = 245/427 (57%), Gaps = 6/427 (1%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           +H +VI+     DI +  +L+  Y   K    A  +FN + + DVV+W T+I+G +KCG 
Sbjct: 451 MHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFNRMHYKDVVAWNTLINGFTKCGD 510

Query: 92  HKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148
            + A++MF  +    V+P++ T+VS+LSAC+ L    LG   H + ++N  E+ + +  A
Sbjct: 511 PRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDLYLGICFHGNIIKNGIESEMHVKVA 570

Query: 149 ILDFYIRCGSLASCGYLF-VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           ++D Y +CGSL +   LF +    ++ VSW  MI GY   G   EA+S F +M K +   
Sbjct: 571 LIDMYAKCGSLCTAENLFHLNKHVKDEVSWNVMIAGYLHNGCANEAISTFNQM-KLESVR 629

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
           PN  T V +L A S +S L      H+ I  R     S L+GN++I+MY K G +  + +
Sbjct: 630 PNLVTFVTILPAVSYLSILREAMAFHACI-IRMGFISSTLIGNSLIDMYAKSGQLSYSEK 688

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
            F+ +  K  ISW+ ++SG AM+G G  AL LFSLM    V  D V++I+++SAC H GL
Sbjct: 689 CFHEMENKGTISWNAMLSGYAMHGQGEVALALFSLMQETHVPVDSVSYISVLSACRHAGL 748

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           + +G  +F++M+  + + P M+HYAC+VD+ G AGL +E    I +MP E +  VWGALL
Sbjct: 749 IQEGRNIFQSMTEKHNLEPSMEHYACMVDLLGCAGLFDEVLCLIDKMPTEPDAQVWGALL 808

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
            AC++H N ++ +     L+  +  +   + ++S+ +A   RW D  + R  +   GLKK
Sbjct: 809 GACKMHSNVKLGEIALHHLLKLEPRNAVHYIVLSDIYAQCGRWIDARRTRSNMTDHGLKK 868

Query: 448 KTGCSWI 454
             G SW+
Sbjct: 869 NPGYSWV 875



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 110/406 (27%), Positives = 207/406 (50%), Gaps = 22/406 (5%)

Query: 27  QKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGL 86
           +K  E+H + ++ G   DI +   ++  Y    ++  A + F S+   D+V W+  +S L
Sbjct: 345 EKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKKAKEFFLSLEGRDLVVWSAFLSAL 404

Query: 87  SKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNI 143
            + G+  EA+ +F  +    +KP+   L S++SAC+ + S +LGK +H + ++    ++I
Sbjct: 405 VQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAEISSSRLGKMMHCYVIKADMGSDI 464

Query: 144 ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
            +   ++  Y RC S      LF +M  ++VV+W T+I G+ + G  + A+ +F  ++ +
Sbjct: 465 SVATTLVSMYTRCKSFMYAMTLFNRMHYKDVVAWNTLINGFTKCGDPRLALEMFLRLQLS 524

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
              +P+  T+V++LSAC+ +  L  G   H  I  +  +     V  A+I+MY KCG + 
Sbjct: 525 G-VQPDSGTMVSLLSACALLDDLYLGICFHGNI-IKNGIESEMHVKVALIDMYAKCGSLC 582

Query: 264 IAIQVFNMLAY-KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
            A  +F++  + KD++SW+ +I+G   NGC  +A+  F+ M + +V P+ VTF+ ++ A 
Sbjct: 583 TAENLFHLNKHVKDEVSWNVMIAGYLHNGCANEAISTFNQMKLESVRPNLVTFVTILPAV 642

Query: 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
           S+  ++ + +  F A       +        ++DMY ++G L  +E    EM  +   S 
Sbjct: 643 SYLSILREAMA-FHACIIRMGFISSTLIGNSLIDMYAKSGQLSYSEKCFHEMENKGTIS- 700

Query: 383 WGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
           W A+L+   +H   E              V++  F+LM  T    D
Sbjct: 701 WNAMLSGYAMHGQGE--------------VALALFSLMQETHVPVD 732



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 185/363 (50%), Gaps = 33/363 (9%)

Query: 47  IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID--- 103
           + NSL+  Y    ++  AHQIF+ +   D +SW T+++G    G + E + +   +    
Sbjct: 264 VSNSLIDMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKH 323

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCG 163
           +K N  ++V+ + A +     + GK +H ++L+    ++I++   I+  Y +CG L    
Sbjct: 324 IKMNKISVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKKAK 383

Query: 164 YLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI 223
             F+ +  R++V W+  +    + G+  EA+S+FQEM+  +  +P++  L +++SAC+ I
Sbjct: 384 EFFLSLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQH-EGLKPDKTILSSLVSACAEI 442

Query: 224 SALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTV 283
           S+   GK +H Y+  + D+     V   +++MY +C     A+ +FN + YKD ++W+T+
Sbjct: 443 SSSRLGKMMHCYV-IKADMGSDISVATTLVSMYTRCKSFMYAMTLFNRMHYKDVVAWNTL 501

Query: 284 ISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS-----------HGGLVDQGL 332
           I+G    G  R AL++F  + ++ V PD  T ++L+SAC+           HG ++  G 
Sbjct: 502 INGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDLYLGICFHGNIIKNG- 560

Query: 333 ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFI---REMPIEAEWSVW--GALL 387
                      I  +M     ++DMY + G L  AE      + +  E  W+V   G L 
Sbjct: 561 -----------IESEMHVKVALIDMYAKCGSLCTAENLFHLNKHVKDEVSWNVMIAGYLH 609

Query: 388 NAC 390
           N C
Sbjct: 610 NGC 612



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 166/331 (50%), Gaps = 22/331 (6%)

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           NS+  P ++ W ++I   S+    +EAI  +  +    ++P+  T   VL AC+  +   
Sbjct: 85  NSITNPSLILWNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACTGALDFH 144

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G AIH        E ++ +   ++D Y + G L +   +F KMP ++V SW  MI G +
Sbjct: 145 EGVAIHQDIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLS 204

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +     EA+ +FQ M+  +  EP+  +++N+  A S +  +   K +H Y+  R    V 
Sbjct: 205 QSSNPCEALEIFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKSIHGYVVRR---CVF 261

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
            +V N++I+MY KCG+V +A Q+F+ +  KD ISW+T+++G   +GC  + LQL   M  
Sbjct: 262 GVVSNSLIDMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKR 321

Query: 306 NAVFPDDVTFIALISACSHGGLVDQG------LILFKAMSTVYEIVPQMQHYACVVDMYG 359
             +  + ++ +  + A +    +++G       +     S +    P       +V MY 
Sbjct: 322 KHIKMNKISVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATP-------IVSMYA 374

Query: 360 RAGLLEEAEAFIREMPIEA-EWSVWGALLNA 389
           + G L++A+ F   + +E  +  VW A L+A
Sbjct: 375 KCGELKKAKEFF--LSLEGRDLVVWSAFLSA 403


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 149/438 (34%), Positives = 250/438 (57%), Gaps = 14/438 (3%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           ++HAHV+  G L D+ I N LL+ Y   K I  A+ +F+ +   D  +W+ ++ G +K G
Sbjct: 21  QVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKAG 80

Query: 91  FHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
            H      F     CG  V P+  TL  V+  C      ++G+ IH   L++   ++  +
Sbjct: 81  DHAGCYATFRELLRCG--VTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFV 138

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK--EAVSVFQEMEKT 203
             +++D Y +C  +     LF +M  +++V+WT MIG YA+   C   E++ +F  M + 
Sbjct: 139 CASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYAD---CNAYESLVLFDRM-RE 194

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
           +   P++  +V V++AC+ + A+   ++ + YI  R   S+  ++G A+I+MY KCG V 
Sbjct: 195 EGVVPDKVAMVTVVNACAKLGAMHRARFANDYI-VRNGFSLDVILGTAMIDMYAKCGSVE 253

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
            A +VF+ +  K+ ISWS +I+    +G G+ A+ LF +M+  A+ P+ VTF++L+ ACS
Sbjct: 254 SAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACS 313

Query: 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 383
           H GL+++GL  F +M   + + P ++HY C+VD+ GRAG L+EA   I  M +E +  +W
Sbjct: 314 HAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLW 373

Query: 384 GALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443
            ALL ACRIH   E+ ++    L+  +  + G + L+SN +A A +WE   K RD + + 
Sbjct: 374 SALLGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQR 433

Query: 444 GLKKKTGCSWIEVNPSIF 461
            LKK  G +WIEV+   +
Sbjct: 434 KLKKIPGWTWIEVDNKTY 451



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 172/382 (45%), Gaps = 52/382 (13%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           +L C  + ++YT    ++ C      Q    IH  V+++G L D F+  SL+  Y     
Sbjct: 92  LLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVCASLVDMYAKCIV 151

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAI--DMFCGIDVKPNANTLVSVLSAC 118
           +  A ++F  ++  D+V+WT +I   + C  ++  +  D      V P+   +V+V++AC
Sbjct: 152 VEDAQRLFERMLSKDLVTWTVMIGAYADCNAYESLVLFDRMREEGVVPDKVAMVTVVNAC 211

Query: 119 SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWT 178
           + L +    +  + + +RN    ++IL  A++D Y +CGS+ S   +F +M ++NV+SW+
Sbjct: 212 AKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEKNVISWS 271

Query: 179 TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST 238
            MI  Y   G  K+A+ +F  M       PN  T V++L ACS    +  G         
Sbjct: 272 AMIAAYGYHGRGKDAIDLFHMMLSCA-ILPNRVTFVSLLYACSHAGLIEEG--------- 321

Query: 239 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML-----AYKDKISWSTVISGLAMNGCG 293
                                      ++ FN +        D   ++ ++  L   G  
Sbjct: 322 ---------------------------LRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRL 354

Query: 294 RQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQ-HYA 352
            +AL+L   M +     D+  + AL+ AC     ++   +  KA +++ E+ PQ   HY 
Sbjct: 355 DEALRLIEAMTVE---KDERLWSALLGACRIHSKME---LAEKAANSLLELQPQNPGHYV 408

Query: 353 CVVDMYGRAGLLEEAEAFIREM 374
            + ++Y +AG  E+   F R+M
Sbjct: 409 LLSNIYAKAGKWEKVAKF-RDM 429



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 125/277 (45%), Gaps = 27/277 (9%)

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           + +HAH + N    ++++ N +L  Y +  ++     LF  +  R+  +W+ M+GG+A+ 
Sbjct: 20  RQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKA 79

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G      + F+E+ +     P+  TL  V+  C   + L  G+ +H  +  ++ L   + 
Sbjct: 80  GDHAGCYATFRELLRCG-VTPDNYTLPFVIRTCRDRTDLQIGRVIHDVV-LKHGLLSDHF 137

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V  ++++MY KC  V  A ++F  +  KD ++W+ +I   A +    ++L LF  M    
Sbjct: 138 VCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYA-DCNAYESLVLFDRMREEG 196

Query: 308 VFPDDVTFIALISACSHGG-----------LVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
           V PD V  + +++AC+  G           +V  G  L   + T             ++D
Sbjct: 197 VVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTA------------MID 244

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           MY + G +E A      M  E     W A++ A   H
Sbjct: 245 MYAKCGSVESAREVFDRMK-EKNVISWSAMIAAYGYH 280


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 165/474 (34%), Positives = 265/474 (55%), Gaps = 62/474 (13%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSW----------- 79
           ++H   +  G + D+F+ N+L+  Y     +  A+++F  + F DVV+W           
Sbjct: 252 QVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNG 311

Query: 80  ------------------------TTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLV 112
                                   +++ISG ++ GF  EA+D+F   CG   +PN  TL+
Sbjct: 312 RFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLM 371

Query: 113 SVLSACSSLVSHKLGKAIHAHSLR-------NLNENNIILDNAILDFYIRCGSLASCGYL 165
           S+LSAC+S+ +   GK  H +S++       N + +++ + NA++D Y +C SL     +
Sbjct: 372 SLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAM 431

Query: 166 FVKM-PK-RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA-EPNEATLVNVLSACSS 222
           F ++ PK R+VV+WT MIGGYA+ G    A+ +F EM K      PN+ T+  VL AC+ 
Sbjct: 432 FDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACAR 491

Query: 223 ISALSFGKYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWS 281
           ++AL FGK +H+Y+  R  +    L V N +I+MY K GDV  A  VF+ ++ ++ +SW+
Sbjct: 492 LAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWT 551

Query: 282 TVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 341
           ++++G  M+G    A ++F  M   A+  D +TF+ ++ ACSH G+ D G          
Sbjct: 552 SLLTGYGMHGRSEDAFRVFDEMRKEALVLDGITFLVVLYACSHSGM-DFG---------- 600

Query: 342 YEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDR 401
             + P ++HYAC+VD+ GRAG L EA   I +MPIE    VW ALL+ACRIH N+E+ + 
Sbjct: 601 --VDPGVEHYACMVDLLGRAGRLGEAMRLINDMPIEPTPVVWIALLSACRIHSNEELAEF 658

Query: 402 IRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
             + L+  K  + GT+ L+SN +A A RW+D  +I   ++R G+KK  G SW++
Sbjct: 659 AAKKLLELKADNDGTYTLLSNIYANARRWKDVARIGYLMKRTGIKKIPGWSWVK 712



 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 127/462 (27%), Positives = 219/462 (47%), Gaps = 59/462 (12%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +HYTF    KAC      +    IH  VI  G   ++F+ N+++  Y   K +  A ++F
Sbjct: 125 DHYTFPFVFKACGEISNFELGASIHGCVIRLGFESNVFVCNAVISMYGKCKAVVHARKVF 184

Query: 69  NSVVFP---DVVSWTTIISGLSKCGFHKEAIDMF----CGIDVKPNANTLVSVLSACSSL 121
           + + +    D V+W +I+S  S C     A+ +F     G  + P+   +V++L  C  L
Sbjct: 185 DELCYRGICDSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNILPVCGYL 244

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM- 180
                G+ +H   +R+    ++ + NA++D Y +CG +     +F +M  ++VV+W  M 
Sbjct: 245 GLGLCGRQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMV 304

Query: 181 ----------------------------------IGGYAERGFCKEAVSVFQEMEKTKEA 206
                                             I GYA+RGF  EA+ VF++M   +  
Sbjct: 305 TGYSQNGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCR-C 363

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSY-----ISTRYDLSVSNL-VGNAVINMYVKCG 260
            PN  TL+++LSAC+S+ AL  GK  H Y     +   ++    +L V NA+I+MY KC 
Sbjct: 364 RPNVVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCK 423

Query: 261 DVGIAIQVFNMLAYKDK--ISWSTVISGLAMNGCGRQALQLFSLM--IINAVFPDDVTFI 316
            + +A  +F+ +  KD+  ++W+ +I G A +G    ALQLFS M  I N + P+D T  
Sbjct: 424 SLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTIS 483

Query: 317 ALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA-CVVDMYGRAGLLEEAEAFIREMP 375
            ++ AC+    +  G  +   +     I   +   A C++DMY ++G ++ A+     M 
Sbjct: 484 CVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMS 543

Query: 376 IEAEWSVWGALLNACRIHRNDE----MFDRIRQDLVNKKGVS 413
                S W +LL    +H   E    +FD +R++ +   G++
Sbjct: 544 KRNAVS-WTSLLTGYGMHGRSEDAFRVFDEMRKEALVLDGIT 584



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 154/321 (47%), Gaps = 11/321 (3%)

Query: 28  KALEIHAHVIEYGHLHDIFIQ-NSLLHFYVTVKDIFSAHQIFNSVVFPD---VVSWTTII 83
           +A  +H   I  GHL + +    +L++ Y++   I +A  +    V P    V  W  +I
Sbjct: 39  QAKLLHQQYIINGHLLNSYTNVTNLIYTYISSNSITNAILLLEKNVTPSHSSVYWWNQLI 98

Query: 84  SGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNE 140
                      A+ +F  +      P+  T   V  AC  + + +LG +IH   +R   E
Sbjct: 99  RHALHFNSPNTALRLFRRMKTLHWTPDHYTFPFVFKACGEISNFELGASIHGCVIRLGFE 158

Query: 141 NNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV---VSWTTMIGGYAERGFCKEAVSVF 197
           +N+ + NA++  Y +C ++     +F ++  R +   V+W +++  Y+       AVS+F
Sbjct: 159 SNVFVCNAVISMYGKCKAVVHARKVFDELCYRGICDSVTWNSIVSVYSHCFVPNVAVSLF 218

Query: 198 QEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYV 257
           +EM       P+   +VN+L  C  +     G+ VH +   R  L     VGNA+++MY 
Sbjct: 219 REMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQVHGF-CVRSGLVEDVFVGNALVDMYA 277

Query: 258 KCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIA 317
           KCG +  A +VF  + +KD ++W+ +++G + NG    AL LF  M    +  D VT+ +
Sbjct: 278 KCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIESDVVTWSS 337

Query: 318 LISACSHGGLVDQGLILFKAM 338
           +IS  +  G   + + +F+ M
Sbjct: 338 VISGYAQRGFGCEAMDVFRQM 358



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 104/231 (45%), Gaps = 16/231 (6%)

Query: 193 AVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAV 252
           A+ +F+ M KT    P+  T   V  AC  IS    G  +H  +  R     +  V NAV
Sbjct: 110 ALRLFRRM-KTLHWTPDHYTFPFVFKACGEISNFELGASIHGCV-IRLGFESNVFVCNAV 167

Query: 253 INMYVKCGDVGIAIQVFNMLAYK---DKISWSTVISGLAMNGCGRQALQLFSLMIIN-AV 308
           I+MY KC  V  A +VF+ L Y+   D ++W++++S  +       A+ LF  M +   +
Sbjct: 168 ISMYGKCKAVVHARKVFDELCYRGICDSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGI 227

Query: 309 FPDDVTFIALISACSHGGLVDQGLIL--FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
            PD V  + ++  C + GL   G  +  F   S + E V        +VDMY + G +E+
Sbjct: 228 LPDTVGVVNILPVCGYLGLGLCGRQVHGFCVRSGLVEDVFVGN---ALVDMYAKCGKMED 284

Query: 367 AEAFIREMPIEAEWSVWGALLNA----CRIHRNDEMFDRIRQDLVNKKGVS 413
           A      M  + +   W A++       R      +F ++R++ +    V+
Sbjct: 285 ANKVFERMRFK-DVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIESDVVT 334



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 59/116 (50%), Gaps = 5/116 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHD--IFIQNSLLHFYVTVKDIFSAHQ 66
           N +T +  L AC+     +   +IHA+V+    +    +F+ N L+  Y    D+ +A  
Sbjct: 478 NDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQV 537

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKP---NANTLVSVLSACS 119
           +F+S+   + VSWT++++G    G  ++A  +F  +  +    +  T + VL ACS
Sbjct: 538 VFDSMSKRNAVSWTSLLTGYGMHGRSEDAFRVFDEMRKEALVLDGITFLVVLYACS 593


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 152/461 (32%), Positives = 265/461 (57%), Gaps = 8/461 (1%)

Query: 4   CPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFS 63
           CP   N +T + ALKAC+     +   ++H+ +++     D+F+   L+  Y     +  
Sbjct: 356 CP---NIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLED 412

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 120
           A   FN +   D+++W  IISG S+     EA+ +F  +    +  N  TL ++L + + 
Sbjct: 413 ARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAG 472

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           L    + + +H  S+++   ++I + N+++D Y +C  +     +F +    ++VS+T+M
Sbjct: 473 LQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSM 532

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           I  YA+ G  +EA+ +F EM+   E +P+     ++L+AC+++SA   GK +H +I  +Y
Sbjct: 533 ITAYAQYGQGEEALKLFLEMQDM-ELKPDRFVCSSLLNACANLSAFEQGKQLHVHI-LKY 590

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
              +    GN+++NMY KCG +  A + F+ L  +  +SWS +I GLA +G GRQALQLF
Sbjct: 591 GFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLF 650

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
           + M+   V P+ +T ++++ AC+H GLV +  + F++M  ++   P  +HYAC++D+ GR
Sbjct: 651 NQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGR 710

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           AG + EA   + +MP EA  SVWGALL A RIH++ E+  R  + L   +    GT  L+
Sbjct: 711 AGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLL 770

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           +N +A A +WE+  ++R  +R   +KK+ G SWIEV   ++
Sbjct: 771 ANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVY 811



 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 116/382 (30%), Positives = 199/382 (52%), Gaps = 9/382 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           ++++ L  C      +  L+IHAH+ + G   D  I+N L++ Y   ++   A ++ +  
Sbjct: 58  SYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDES 117

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLVSHKLGK 128
             PD+VSW+ +ISG ++ G    A+  F     + VK N  T  SVL ACS +   ++GK
Sbjct: 118 SEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGK 177

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H   + +  E ++ + N ++  Y +C        LF ++P+RNVVSW  +   Y +  
Sbjct: 178 QVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQID 237

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSNL 247
           FC EAV +F EM  +   +PNE +L ++++AC+ +   S GK +H Y I   YD      
Sbjct: 238 FCGEAVGLFYEMVLSG-IKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDW--DPF 294

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
             NA+++MY K GD+  AI VF  +   D +SW+ VI+G  ++    QAL+L   M  + 
Sbjct: 295 SANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSG 354

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           + P+  T  + + AC+  GL + G  L  ++  + ++   +     +VDMY +  LLE+A
Sbjct: 355 ICPNIFTLSSALKACAGMGLKELGRQLHSSLMKM-DMESDLFVSVGLVDMYSKCDLLEDA 413

Query: 368 EAFIREMPIEAEWSVWGALLNA 389
                 +P E +   W A+++ 
Sbjct: 414 RMAFNLLP-EKDLIAWNAIISG 434



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 183/382 (47%), Gaps = 28/382 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +TF+  LKACS+    +   ++H  V+  G   D+F+ N+L+  Y    +   + ++F
Sbjct: 156 NEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLF 215

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           + +   +VVSW  + S   +  F  EA+ +F  +    +KPN  +L S+++AC+ L    
Sbjct: 216 DEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSS 275

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK IH + ++   + +    NA++D Y + G LA    +F K+ + ++VSW  +I G  
Sbjct: 276 RGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCV 335

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
                ++A+ +  +M+++    PN  TL + L AC+ +     G+ +HS +  + D+   
Sbjct: 336 LHEHHEQALELLGQMKRSGIC-PNIFTLSSALKACAGMGLKELGRQLHSSL-MKMDMESD 393

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V   +++MY KC  +  A   FN+L  KD I+W+ +ISG +      +AL LF  M  
Sbjct: 394 LFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHK 453

Query: 306 NAVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
             +  +  T   ++ + +           HG  V  G       S +Y +         +
Sbjct: 454 EGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGF-----HSDIYVV-------NSL 501

Query: 355 VDMYGRAGLLEEAEAFIREMPI 376
           +D YG+   +E+AE    E  I
Sbjct: 502 IDSYGKCSHVEDAERIFEECTI 523



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 160/320 (50%), Gaps = 13/320 (4%)

Query: 106 PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYL 165
           P + +   +LS C +  S + G  IHAH  ++   ++  + N +++ Y +C +      L
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKL 113

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
             +  + ++VSW+ +I GYA+ G    A+  F EM      + NE T  +VL ACS +  
Sbjct: 114 VDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLG-VKCNEFTFSSVLKACSIVKD 172

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285
           L  GK VH  +           V N ++ MY KC +   + ++F+ +  ++ +SW+ + S
Sbjct: 173 LRIGKQVHGVVVVS-GFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFS 231

Query: 286 G-LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVD--QGLILFKAMSTV- 341
             + ++ CG +A+ LF  M+++ + P++ +  ++++AC+  GL D  +G I+   +  + 
Sbjct: 232 CYVQIDFCG-EAVGLFYEMVLSGIKPNEFSLSSMVNACT--GLRDSSRGKIIHGYLIKLG 288

Query: 342 YEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDR 401
           Y+  P   +   +VDMY + G L +A +   ++  + +   W A++  C +H + E    
Sbjct: 289 YDWDPFSAN--ALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVLHEHHEQALE 345

Query: 402 IRQDLVNKKGVSVGTFALMS 421
           +   +  + G+    F L S
Sbjct: 346 LLGQM-KRSGICPNIFTLSS 364


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 157/467 (33%), Positives = 270/467 (57%), Gaps = 24/467 (5%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFS- 63
           PSS NH T  Q L+ C          ++HAH+I  G +   +  + +L    T+  +F+ 
Sbjct: 6   PSS-NHPTL-QLLEKCKTL---DTLKQVHAHMITTGLIFHTYPLSRILLISSTI--VFTH 58

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKE-AIDMFCGI----DVKPNANTLVSVLSAC 118
           A  IFN +  P +  + T+IS L+    H   A  ++  +     +KPN  T  S+  AC
Sbjct: 59  ALSIFNHIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKAC 118

Query: 119 SSLVSHKLGKAIHAHSLRNLNEN-NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
            S    + G+A+H H L+ L    +  +  A+L++Y +CG + +C YLF ++ K ++ SW
Sbjct: 119 GSQPWLRHGRALHTHVLKFLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLASW 178

Query: 178 TTMIGGYAER--GFCK------EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 229
            +++  Y       C+      E +++F EM+K+   + NE TLV ++SAC+ + ALS G
Sbjct: 179 NSILSAYVHNSGAICEDVSLSLEVLTLFIEMQKSL-IKANEVTLVALISACAELGALSQG 237

Query: 230 KYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAM 289
            + H Y+  +++L +++ VG A+I+MY KCG + +A Q+F+ L ++D + ++ +I G A+
Sbjct: 238 AWAHVYV-LKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAI 296

Query: 290 NGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQ 349
           +G G QAL LF  M +  + PDDVT +  + +CSH GLV++G  +F++M  VY + P+++
Sbjct: 297 HGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLE 356

Query: 350 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNK 409
           HY C+VD+ GRAG L EAE  +  MP++    +W +LL A R+H N E+ + + + L+  
Sbjct: 357 HYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQL 416

Query: 410 KGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           +  + G + L+SN +A  +RW+D  ++R  ++  G+ K  G S +EV
Sbjct: 417 EPETSGNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEV 463


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 161/433 (37%), Positives = 245/433 (56%), Gaps = 5/433 (1%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           +IH  V++ G   D+F+  SL+H Y     +  A ++F+ +   D  SW  +ISG  + G
Sbjct: 15  KIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQNG 74

Query: 91  FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
              EA+D+   +    VK +A T+ SVL  C+ +     GK IH + +++  E  + + N
Sbjct: 75  NAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFVSN 134

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           A+++ Y + GSL     +F  + K +VVSW T+I GYA+ G   EA+ V+  ME+ +E  
Sbjct: 135 ALINMYAKFGSLGHAQKVFGLLIK-DVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEII 193

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
           PN+ T V++L A S + AL  G  +H  +  +  L     VG  +I+MY KCG +  AI 
Sbjct: 194 PNQGTWVSILPAYSHVGALQQGMRIHGQV-IKNCLYSDVFVGTCLIDMYGKCGKLDDAIS 252

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           +F  +  K+ + W+ +IS   ++G G +AL+LF  M    V PD +TF++L+SACSH GL
Sbjct: 253 LFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACSHSGL 312

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           V      F  M   Y I P ++HY C+VD++GRAG LE A  FI++MPI+ + S WGALL
Sbjct: 313 VSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALL 372

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
           NACRIH N E+     + L      +VG + L+SN +A   +WE  + +R   R  GL+K
Sbjct: 373 NACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWEGVDDVRSLARDRGLRK 432

Query: 448 KTGCSWIEVNPSI 460
             G S I +N  +
Sbjct: 433 NPGWSSIILNNKV 445



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 156/287 (54%), Gaps = 13/287 (4%)

Query: 114 VLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
           V+ AC  L+    GK IH   L+   E ++ +  +++  Y R G +     LF  MP R+
Sbjct: 3   VVKACGDLLD---GKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARD 59

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
             SW  MI GY + G   EA+ +  EM + +  + +  T+ +VL  C+ +  +  GK +H
Sbjct: 60  RGSWNAMISGYCQNGNAAEALDIADEM-RLEGVKMDAITVASVLPVCAQVGDILSGKLIH 118

Query: 234 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG 293
            Y+  ++ L     V NA+INMY K G +G A +VF +L  KD +SW+T+I+G A NG  
Sbjct: 119 LYV-IKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLI-KDVVSWNTLITGYAQNGLA 176

Query: 294 RQALQLFSLMIIN-AVFPDDVTFIALISACSHGGLVDQGLILFKAM--STVYEIVPQMQH 350
            +A++++ LM  +  + P+  T+++++ A SH G + QG+ +   +  + +Y  V     
Sbjct: 177 SEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVG-- 234

Query: 351 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
             C++DMYG+ G L++A +   ++P +     W A+++   +H + E
Sbjct: 235 -TCLIDMYGKCGKLDDAISLFYQVPRKNS-VPWNAMISCYGVHGDGE 279



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 19/185 (10%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T+   L A S     Q+ + IH  VI+     D+F+   L+  Y     +  A  +F
Sbjct: 195 NQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLF 254

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSAC--SSLVS 123
             V   + V W  +IS     G  ++A+++F  +    VKP+  T VS+LSAC  S LVS
Sbjct: 255 YQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACSHSGLVS 314

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAI------LDFYIRCGSLASCGYLFVKMP-KRNVVS 176
                   A    N+ E    +  ++      +D + R G L        KMP + +  +
Sbjct: 315 -------DAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASA 367

Query: 177 WTTMI 181
           W  ++
Sbjct: 368 WGALL 372


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 154/482 (31%), Positives = 268/482 (55%), Gaps = 31/482 (6%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFY----------- 55
           S + + F   L+A +L      A  +HA VI  G   D++  N+L++ Y           
Sbjct: 73  SPDRHLFPSLLRASTLFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLH 132

Query: 56  ------------VTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI- 102
                        +VK I S  ++F+ +   DVVSW T+I+G ++ G ++EA++M   + 
Sbjct: 133 EFPQARHNHNNKYSVK-IDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMG 191

Query: 103 --DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLA 160
             +++P++ TL S+L   +   +   GK IH +++R+  + ++ + ++++D Y +C  + 
Sbjct: 192 KENLRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVE 251

Query: 161 SCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
                F  +  R+ +SW ++I G  + G   + +  F+ M K K  +P + +  +V+ AC
Sbjct: 252 LSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEK-VKPMQVSFSSVIPAC 310

Query: 221 SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY--KDKI 278
           + ++AL+ GK +H+YI  R     +  + +++++MY KCG++ +A  +FN +    +D +
Sbjct: 311 AHLTALNLGKQLHAYI-IRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMV 369

Query: 279 SWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM 338
           SW+ +I G AM+G    A+ LF  M+++ V P  V F+A+++ACSH GLVD+G   F +M
Sbjct: 370 SWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSM 429

Query: 339 STVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEM 398
              + + P ++HYA V D+ GRAG LEEA  FI  M  E   SVW  LL ACR H+N E+
Sbjct: 430 QRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIEL 489

Query: 399 FDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNP 458
            +++   ++     ++G   +MSN ++ A RW D  K+R  +R+ GLKK   CSWIEV  
Sbjct: 490 AEKVVNKILLVDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPACSWIEVGN 549

Query: 459 SI 460
            +
Sbjct: 550 KV 551



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 170/348 (48%), Gaps = 33/348 (9%)

Query: 74  PDVVSWTTIISGLSKCGFHKEAI---DMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAI 130
           P  ++W  II   +  G  + ++   ++     + P+ +   S+L A +      L +++
Sbjct: 39  PHSLAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSL 98

Query: 131 HAHSLRNLNENNIILDNAILDFYIR----------------------CGSLASCGYLFVK 168
           HA  +R     ++   NA+++ Y +                         + S   LF +
Sbjct: 99  HAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDR 158

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           MP R+VVSW T+I G A+ G  +EA+++ +EM K +   P+  TL ++L   +  + ++ 
Sbjct: 159 MPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGK-ENLRPDSFTLSSILPIFTEHANVTK 217

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
           GK +H Y + R+       +G+++I+MY KC  V +++  F++L+ +D ISW+++I+G  
Sbjct: 218 GKEIHGY-AIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCV 276

Query: 289 MNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQM 348
            NG   Q L  F  M+   V P  V+F ++I AC+H   ++ G  L    + +  +    
Sbjct: 277 QNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLH---AYIIRLGFDD 333

Query: 349 QHY--ACVVDMYGRAGLLEEAEAFIREMPI-EAEWSVWGALLNACRIH 393
             +  + ++DMY + G ++ A     ++ + + +   W A++  C +H
Sbjct: 334 NKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMH 381


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 150/449 (33%), Positives = 252/449 (56%), Gaps = 41/449 (9%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YT+   LKACS A    + +++HAH++++G   D  I +S +  Y +   +  A +I 
Sbjct: 136 NKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRIL 195

Query: 69  NSVVFP-DVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLG 127
           +      D V W  +I G  + G  + A ++F G+  +   +T                 
Sbjct: 196 DDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTW---------------- 239

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
                              NA++  + RCG +      F +M +R+ +SW+ MI GY + 
Sbjct: 240 -------------------NAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQE 280

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G   EA+ +F +M+K K   P +  L +VLSAC+++ AL  G+++H+Y + R  + +  +
Sbjct: 281 GCFMEALEIFHQMQKEK-IRPRKFVLPSVLSACANLGALDQGRWIHTY-AKRNSIQLDGV 338

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           +G ++++MY KCG + +A +VF  ++ K+  SW+ +I GLAM+G    A+ LFS M IN 
Sbjct: 339 LGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDIN- 397

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
             P+++TF+ +++AC+HGGLV +GL +F +M   Y + PQ++HY C+VD+ GRAGLL EA
Sbjct: 398 --PNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEA 455

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
           E  +  +P E   +VWGALL ACR H N E+ +R+ + L+  +  + G + L+SN +A A
Sbjct: 456 EKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKA 515

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
            RWE+  ++R  ++  G+K   G S I++
Sbjct: 516 GRWEEVGEVRKLMKERGIKTTPGTSIIDL 544



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 117/299 (39%), Gaps = 69/299 (23%)

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
           FV+ P  NV  W  MI    E     +A+ ++ EM       PN+ T   VL ACS    
Sbjct: 96  FVRKP--NVFLWNCMIKVCIENNEPFKAILLYYEM-MVAHFRPNKYTYPAVLKACSDAGV 152

Query: 226 LSFGKYVHSYI--------------STRYDLSVSNLVG-----------------NAVIN 254
           ++ G  VH+++              + R   S   LV                  NA+I+
Sbjct: 153 VAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMID 212

Query: 255 MYVKCGDV--------------------------------GIAIQVFNMLAYKDKISWST 282
            Y++ G+V                                 +A + F+ +  +D+ISWS 
Sbjct: 213 GYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSA 272

Query: 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 342
           +I G    GC  +AL++F  M    + P      +++SAC++ G +DQG  +    +   
Sbjct: 273 MIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIH-TYAKRN 331

Query: 343 EIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFD 400
            I         +VDMY + G ++ A     +M    E S W A++    +H R ++  D
Sbjct: 332 SIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMS-NKEVSSWNAMIGGLAMHGRAEDAID 389



 Score = 38.5 bits (88), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 70/164 (42%), Gaps = 8/164 (4%)

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285
           L  G    SYI+     S +N+  N  ++          +++VF+ +   +   W+ +I 
Sbjct: 58  LRTGHLQDSYIAGSLVKSYANVSTNRYLSFES-------SLRVFDFVRKPNVFLWNCMIK 110

Query: 286 GLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 345
               N    +A+ L+  M++    P+  T+ A++ ACS  G+V +G +   A    + + 
Sbjct: 111 VCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEG-VQVHAHLVKHGLG 169

Query: 346 PQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
                 +  + MY   G L EA   + +   E +   W A+++ 
Sbjct: 170 GDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDG 213


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 164/522 (31%), Positives = 276/522 (52%), Gaps = 73/522 (13%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +T T  L + +     +   ++H+ +++ G   ++ + NSLL+ Y    D   A  +F
Sbjct: 145 SQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVF 204

Query: 69  NSVVFPDV-------------------------------VSWTTIISGLSKCGFHKEAID 97
           + +V  D+                               V+W ++ISG ++ G+   A+D
Sbjct: 205 DRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALD 264

Query: 98  MFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIHAH-------------------- 133
           MF  +     + P+  TL SVLSAC++L    +G+ IH+H                    
Sbjct: 265 MFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMY 324

Query: 134 -------SLRNLNENNIILD------NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
                  + R L E     D       A+LD YI+ G +     +F  +  R+VV+WT M
Sbjct: 325 SRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAM 384

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH-SYISTR 239
           I GY + G   EA+++F+ M   +E  PN  TL  +LS  SS+++L  GK +H S + + 
Sbjct: 385 IVGYEQHGLYGEAINLFRSM-VGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSG 443

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA-YKDKISWSTVISGLAMNGCGRQALQ 298
              SVS  V NA+I MY K G +  A + F+++   +D +SW+++I  LA +G   +AL+
Sbjct: 444 EIYSVS--VSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALE 501

Query: 299 LFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMY 358
           LF  M++  + PD +T++ + SAC+H GLV+QG   F  M  V +I+P + HYAC+VD++
Sbjct: 502 LFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLF 561

Query: 359 GRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFA 418
           GRAGLL+EA+ FI +MPIE +   WG+LL+ACR+++N ++     + L+  +  + G ++
Sbjct: 562 GRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYS 621

Query: 419 LMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            ++N ++   +WE+  KIR  ++   +KK+ G SWIEV   +
Sbjct: 622 ALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKV 663



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/435 (24%), Positives = 191/435 (43%), Gaps = 93/435 (21%)

Query: 42  LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG 101
           L   F  N++L  Y    D+ S+ + F+ +   D VSWTT+I G    G + +AI +   
Sbjct: 77  LRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGE 136

Query: 102 I---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGS 158
           +    ++P+  TL +VL++ ++    + GK +H+  ++     N+ + N++L+ Y +CG 
Sbjct: 137 MMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGD 196

Query: 159 LASCGYLFVKM-------------------------------PKRNVVSWTTMIGGYAER 187
                 +F +M                                +R++V+W +MI GY +R
Sbjct: 197 PMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQR 256

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSVSN 246
           G+   A+ +F +M +     P+  TL +VLSAC+++  L  G+ +HS+I +T +D  +S 
Sbjct: 257 GYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFD--ISG 314

Query: 247 LVGNAVINMYVKC---------------------------------GDVGIAIQVFNMLA 273
           +V NA+I+MY +C                                 GD+  A  +F+ L 
Sbjct: 315 IVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLK 374

Query: 274 YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS---------- 323
            +D ++W+ +I G   +G   +A+ LF  M+     P+  T  A++S  S          
Sbjct: 375 DRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQ 434

Query: 324 -HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
            HG  V  G I   ++S              ++ MY +AG +  A      +  E +   
Sbjct: 435 IHGSAVKSGEIYSVSVSN------------ALITMYAKAGSITSASRAFDLIRCERDTVS 482

Query: 383 WGALLNACRIHRNDE 397
           W +++ A   H + E
Sbjct: 483 WTSMIIALAQHGHAE 497



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 170/387 (43%), Gaps = 80/387 (20%)

Query: 106 PNANTLVSVLSACSSLVSHKLGKA--------IHAHSLRNLNENNIILDNAILDFYIRCG 157
           P   +L ++L  C++L+   + K+        +H   +++    ++ L N +++ Y + G
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTG 63

Query: 158 SLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEM----------------- 200
                  LF +MP R   SW T++  YA+RG    +   F  +                 
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKN 123

Query: 201 ------------EKTKEA-EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
                       E  +E  EP++ TL NVL++ ++   L  GK VHS+I  +  L  +  
Sbjct: 124 IGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFI-VKLGLRGNVS 182

Query: 248 VGNAVINMYVKCGD-------------------------------VGIAIQVFNMLAYKD 276
           V N+++NMY KCGD                               + +A+  F  +A +D
Sbjct: 183 VSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERD 242

Query: 277 KISWSTVISGLAMNGCGRQALQLFSLMIINAVF-PDDVTFIALISACSH-GGLVDQGLIL 334
            ++W+++ISG    G   +AL +FS M+ +++  PD  T  +++SAC++   L     I 
Sbjct: 243 IVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIH 302

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFI-----REMPIEAEWSVWGALLNA 389
              ++T ++I   + +   ++ MY R G +E A   I     +++ IE   ++    +  
Sbjct: 303 SHIVTTGFDISGIVLN--ALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKL 360

Query: 390 CRIHRNDEMFDRIR-QDLVNKKGVSVG 415
             ++    +FD ++ +D+V    + VG
Sbjct: 361 GDMNEAKNIFDSLKDRDVVAWTAMIVG 387


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 149/453 (32%), Positives = 250/453 (55%), Gaps = 37/453 (8%)

Query: 43  HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDM---F 99
            +++  N++L  Y  +  I  A ++F+ +   DVVSW T++   ++CG+  EA+     F
Sbjct: 124 RNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEF 183

Query: 100 CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCG-- 157
             + ++ N  +   VL+ C  L    L + +H   L     +N++L +++LD Y++CG  
Sbjct: 184 RQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLM 243

Query: 158 -----------------------------SLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
                                         + S   LFV+MP++N VSWT +I GYA  G
Sbjct: 244 GDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNG 303

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
              +A+ +F +M       P++ T  + L AC+SI++L  GK +H+Y+  R +   + +V
Sbjct: 304 MGHKALELFTKM-MLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYL-LRINFQPNTIV 361

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYK-DKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
            +A+I+MY KCG +GI  +VF+++  K D + W+T+IS LA +GCG +A+Q+   M+ + 
Sbjct: 362 VSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSG 421

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
             PD +TF+ +++ACSH GLV QGL  F++MS  Y IVP  +HYAC++D+ GRAG  EE 
Sbjct: 422 AKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEEV 481

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
              + +MP + +  VW ALL  CRIH + E+  +  + L+  +  S   + L+S+ +A  
Sbjct: 482 MDQLEKMPYKPDDRVWNALLGVCRIHGHIELGRKAAERLIELEPQSSTAYVLLSSIYAVL 541

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            RWE   K+R  +    +KK+   SW+E+   +
Sbjct: 542 GRWESVQKVRQLMNERQVKKERAISWLEIENKV 574



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 156/367 (42%), Gaps = 64/367 (17%)

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAH-SLRNLNENNIILDNAILDFYIRCGSLASC 162
           ++ ++ TL S+L  C+   + + GK +H H  L  L      L N +++ Y +CG     
Sbjct: 55  LRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEA 114

Query: 163 GYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT------------------K 204
             +F KM  RN+ SW  M+ GYA+ G  K A  +F +M +                    
Sbjct: 115 RKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWD 174

Query: 205 EA------------EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAV 252
           EA            + N  +   VL+ C  +  +   + VH  I     LS + ++ ++V
Sbjct: 175 EALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLS-NVVLSSSV 233

Query: 253 INMYVKCGDVGIAIQVFNMLAYKD-------------------------------KISWS 281
           ++ YVKCG +G A ++F+ ++ +D                                +SW+
Sbjct: 234 LDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWT 293

Query: 282 TVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 341
            +ISG A NG G +AL+LF+ M++  V PD  TF + + AC+    +  G  +   +  +
Sbjct: 294 ALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRI 353

Query: 342 YEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDR 401
               P     + ++DMY + G L         M  + +  +W  +++A   H   E   +
Sbjct: 354 -NFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQ 412

Query: 402 IRQDLVN 408
           +  D+V 
Sbjct: 413 MLDDMVR 419



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 100/413 (24%), Positives = 175/413 (42%), Gaps = 77/413 (18%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N ++F   L  C          ++H  ++  G L ++ + +S+L  YV    +  A ++F
Sbjct: 191 NGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLF 250

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID------------------------- 103
           + +   DV++WTT++SG +K G  K A ++F  +                          
Sbjct: 251 DEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALE 310

Query: 104 ---------VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
                    V+P+  T  S L AC+S+ S K GK IHA+ LR   + N I+ +A++D Y 
Sbjct: 311 LFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYS 370

Query: 155 RCGSLASCGYLFVKMP-KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATL 213
           +CGSL     +F  M  K +VV W T+I   A+ G  +EA+ +  +M ++  A+P++ T 
Sbjct: 371 KCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSG-AKPDKITF 429

Query: 214 VNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 273
           V +L+ACS    +  G      +S  Y +  S                            
Sbjct: 430 VVILNACSHSGLVQQGLNFFESMSCDYGIVPS---------------------------- 461

Query: 274 YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI 333
              +  ++ +I  L   GC  + +     M      PDD  + AL+  C   G ++ G  
Sbjct: 462 ---QEHYACLIDLLGRAGCFEEVMDQLEKMPYK---PDDRVWNALLGVCRIHGHIELGR- 514

Query: 334 LFKAMSTVYEIVPQMQH-YACVVDMY---GRAGLLEEAEAFIREMPIEAEWSV 382
             KA   + E+ PQ    Y  +  +Y   GR   +++    + E  ++ E ++
Sbjct: 515 --KAAERLIELEPQSSTAYVLLSSIYAVLGRWESVQKVRQLMNERQVKKERAI 565



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 5/144 (3%)

Query: 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNA 251
           EAVS  + + + +    +  TL ++L  C+   AL  GK VH ++           + N 
Sbjct: 42  EAVSSLENLAR-RGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNH 100

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD 311
           +INMY KCG    A +VF+ ++ ++  SW+ ++SG A  G  + A +LF  M       D
Sbjct: 101 LINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEK----D 156

Query: 312 DVTFIALISACSHGGLVDQGLILF 335
            V++  ++ A +  G  D+ L  +
Sbjct: 157 VVSWNTMVIAHAQCGYWDEALRFY 180


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 176/553 (31%), Positives = 289/553 (52%), Gaps = 98/553 (17%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQ------------ 48
           MLS     ++YT+   ++ACS+     +A ++H HV++ G   D++++            
Sbjct: 204 MLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSN 263

Query: 49  -------------------NSLLHFYVTVKDIFSA----HQ------------------- 66
                              NS+L  Y+ + ++  A    HQ                   
Sbjct: 264 MTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMR 323

Query: 67  --------IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVL 115
                   +F+ ++  D+V+W+ +I+   +   ++EAI  F G   I V  +    VS L
Sbjct: 324 GLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSAL 383

Query: 116 SACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC------------- 162
           SAC++L+   +GK IH+ SL+   E+ I L NA++  Y +CG +                
Sbjct: 384 SACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLI 443

Query: 163 -------GYL-----------FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
                  GYL           F  MP+++VVSW++MI GYA+     E +++FQEM+ + 
Sbjct: 444 SWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSG 503

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
             +P+E TLV+V+SAC+ ++AL  GK+VH+YI  R  L+++ ++G  +I+MY+KCG V  
Sbjct: 504 -FKPDETTLVSVISACARLAALEQGKWVHAYIK-RNGLTINVILGTTLIDMYMKCGCVET 561

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
           A++VF  +  K   +W+ +I GLAMNG    +L +FS M    V P+++TF+ ++ AC H
Sbjct: 562 ALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRH 621

Query: 325 GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 384
            GLVD+G   F +M   ++I P ++HY C+VD+ GRAG L+EAE  +  MP+  + + WG
Sbjct: 622 MGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWG 681

Query: 385 ALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444
           ALL AC+ H + EM  R+ + L+  +    G   L+SN +A   +W+D  +IR  + +  
Sbjct: 682 ALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHR 741

Query: 445 LKKKTGCSWIEVN 457
           + K  GCS IE N
Sbjct: 742 VLKIPGCSMIEAN 754


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 147/463 (31%), Positives = 260/463 (56%), Gaps = 12/463 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  TF  A+K+CS         + H   + +G   D+F+ ++L+  Y    ++  A  +F
Sbjct: 151 NRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLF 210

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN-----------TLVSVLSA 117
           + +   ++VSWT++I+G  +      A+ +F    V+ + +            +VSVLSA
Sbjct: 211 DEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSA 270

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           CS +    + + +H   ++   E ++ ++N ++D Y +CG L     +F  M +R+V+SW
Sbjct: 271 CSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISW 330

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
            ++I  YA+ G   E++ +F  M K  E   N  TL  VL AC+   +   GK +H  + 
Sbjct: 331 NSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQV- 389

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            +  L  +  VG ++I+MY KCG V +A + F+ +  K+  SWS +++G  M+G  ++AL
Sbjct: 390 IKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEAL 449

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
           ++F  M +  V P+ +TF+++++ACSH GL+++G   FKAMS  +++ P ++HY C+VD+
Sbjct: 450 EVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDL 509

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTF 417
            GRAG L+EA   I+ M +  ++ VWGALL ACR+H+N ++ +   + L      + G +
Sbjct: 510 LGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYY 569

Query: 418 ALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            L+SN +A A RWED  ++R  ++  GL K  G S +++   +
Sbjct: 570 VLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRV 612



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/348 (29%), Positives = 179/348 (51%), Gaps = 33/348 (9%)

Query: 67  IFNSVV-FPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLV 122
           +FN  V   +V SW ++I+ L++ G   EA+  F     + +KPN +T    + +CS+L+
Sbjct: 107 LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 166

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
               G+  H  +L    E ++ + +A++D Y +CG L     LF ++  RN+VSWT+MI 
Sbjct: 167 DLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMIT 226

Query: 183 GYAERGFCKEAVSVFQEM-------EKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           GY +      A+ +F+E        E   E   +   +V+VLSACS +S  S  + VH +
Sbjct: 227 GYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGF 286

Query: 236 ISTR---YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
           +  R    DL V     N +++ Y KCG++G++ +VF+ +A +D ISW+++I+  A NG 
Sbjct: 287 LIKRGFEGDLGVE----NTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGM 342

Query: 293 GRQALQLFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY 351
             +++++F  M+ +  +  + VT  A++ AC+H G    G         +++ V +M   
Sbjct: 343 STESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLG-------KCIHDQVIKMGLE 395

Query: 352 A------CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           +       ++DMY + G +E A      M  E     W A++    +H
Sbjct: 396 SNVFVGTSIIDMYCKCGKVEMARKAFDRMR-EKNVKSWSAMVAGYGMH 442



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 3/116 (2%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           +YN  T +  L AC+ +   +    IH  VI+ G   ++F+  S++  Y     +  A +
Sbjct: 360 NYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARK 419

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACS 119
            F+ +   +V SW+ +++G    G  KEA+++F  ++   VKPN  T VSVL+ACS
Sbjct: 420 AFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACS 475


>gi|449443185|ref|XP_004139361.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Cucumis sativus]
 gi|449525900|ref|XP_004169954.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Cucumis sativus]
          Length = 562

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 160/464 (34%), Positives = 268/464 (57%), Gaps = 15/464 (3%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S +H+TF   LK CS+         +H  +++ G   D++  + LL+ YV+  D+ S  +
Sbjct: 102 SPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLK 161

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVS 123
           +F  +   +VV+WT++I+G       KEA+ +F  ++   V+PN  T+ + L+A +    
Sbjct: 162 VFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRD 221

Query: 124 HKLGKAIHAHSLRNLNEN--------NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVV 175
              GK +H   LR L  +        N+IL  AI+D Y +CG L +   LF KMP+RN+V
Sbjct: 222 IHTGKLVHDR-LRQLGFDPFDTNSCFNVILATAIMDMYAKCGKLVTARNLFDKMPQRNLV 280

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
            W +MI  Y++ G   EA+ +F +ME      PN+AT ++V+SAC+ +   S G+ +H+ 
Sbjct: 281 VWNSMISAYSQYGRGAEALRLFVDMEMAGFV-PNKATFLSVISACTHMGFRSTGRSLHAR 339

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
            + R        +G A+++MY K GD   A+++F+ L  KD ++W+T+ISGLA+ G G++
Sbjct: 340 -ALRASFHEFVAIGTALMDMYAKAGDADTALKIFSKLRKKDVMAWTTMISGLAIQGKGKE 398

Query: 296 ALQLFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
           AL +F  M   A V PD +T+IA++ ACSH GLV++G   F +M+ VY I P M+HY C+
Sbjct: 399 ALNVFRRMEEEAEVAPDQITYIAVLWACSHLGLVEEGQKQFTSMTEVYGIEPTMEHYGCM 458

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414
           +D+  RAG  +EAE  + +MP +   ++  ++LN C ++ N  + +R++  +V  +  S 
Sbjct: 459 IDLLSRAGHSKEAEELLMKMPTQPNATILSSILNGCEMYGNVGLANRVKSHIVELENSSS 518

Query: 415 GTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNP 458
           G + L+SN  A A  W++    RD ++   + K  G S++E+ P
Sbjct: 519 GVYVLLSNIHAKACNWQEMKLARDMLKHKNIGKTLGNSFVEIKP 562



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 142/297 (47%), Gaps = 26/297 (8%)

Query: 107 NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI--RCGSLASCGY 164
           N  T++S L  C ++   K  K IH+  +      NII  + ++DF      G +     
Sbjct: 4   NYYTVMSFLEKCKTM---KELKQIHSLMITTSVVKNIIPCSRLIDFCANSELGDIEYART 60

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224
           +F ++ +R V  W +MI GY   G    A+ +++EM++ K   P+  T   VL  CS I 
Sbjct: 61  VFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEMQR-KGFSPDHFTFPFVLKVCSIID 119

Query: 225 ALSFGKYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTV 283
            L +G+ VH+ I  T ++L V     + ++NMYV CGD+   ++VF  +   + ++W+++
Sbjct: 120 LLVYGQSVHNRIVKTGFELDV--YTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSL 177

Query: 284 ISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS-----------HGGLVDQGL 332
           I+G   N   ++AL+LF  M    V P+++T    ++A +           H  L   G 
Sbjct: 178 IAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVHDRLRQLGF 237

Query: 333 ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
             F   S    I+        ++DMY + G L  A     +MP +    VW ++++A
Sbjct: 238 DPFDTNSCFNVILA-----TAIMDMYAKCGKLVTARNLFDKMP-QRNLVVWNSMISA 288


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 177/556 (31%), Positives = 290/556 (52%), Gaps = 98/556 (17%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQ------------ 48
           MLS     ++YT+   ++ACS+     +A ++H HV++ G   D++++            
Sbjct: 69  MLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSN 128

Query: 49  -------------------NSLLHFYVTVKDIFSA----HQ------------------- 66
                              NS+L  Y+ + ++  A    HQ                   
Sbjct: 129 MTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMR 188

Query: 67  --------IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVL 115
                   +F+ ++  D+V+W+ +I+   +   ++EAI  F G   I V  +    VS L
Sbjct: 189 GLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSAL 248

Query: 116 SACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC------------- 162
           SAC++L+   +GK IH+ SL+   E+ I L NA++  Y +CG +                
Sbjct: 249 SACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLI 308

Query: 163 -------GYL-----------FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
                  GYL           F  MP+++VVSW++MI GYA+     E +++FQEM+ + 
Sbjct: 309 SWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSG 368

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
             +P+E TLV+V+SAC+ ++AL  GK+VH+YI  R  L+++ ++G  +I+MY+KCG V  
Sbjct: 369 -FKPDETTLVSVISACARLAALEQGKWVHAYIK-RNGLTINVILGTTLIDMYMKCGCVET 426

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
           A++VF  +  K   +W+ +I GLAMNG    +L +FS M    V P+++TF+ ++ AC H
Sbjct: 427 ALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRH 486

Query: 325 GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 384
            GLVD+G   F +M   ++I P ++HY C+VD+ GRAG L+EAE  +  MP+  + + WG
Sbjct: 487 MGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWG 546

Query: 385 ALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444
           ALL AC+ H + EM  R+ + L+  +    G   L+SN +A   +W+D  +IR  + +  
Sbjct: 547 ALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHR 606

Query: 445 LKKKTGCSWIEVNPSI 460
           + K  GCS IE N  I
Sbjct: 607 VLKIPGCSMIEANGVI 622



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 96/427 (22%), Positives = 165/427 (38%), Gaps = 114/427 (26%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCG-------FHKEAIDMFCGIDVKPNANTLVSVLS 116
             +IFN +   +   W  +I    +          +K  +  + G D      T   ++ 
Sbjct: 31  TRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGAD----NYTYPLLIQ 86

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
           ACS   S    K +H H L+   ++++ + N +++ +  C ++     +F +    + VS
Sbjct: 87  ACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVS 146

Query: 177 WTTMIGGYAE-------------------------------RGFCKEAVSVFQEMEKTKE 205
           W +++ GY E                               RG   EA  +F EM +   
Sbjct: 147 WNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDM 206

Query: 206 A---------EPNE---------------ATLVNVLSACSSISA------LSFGKYVHSY 235
                     + NE                 +V+ + A S++SA      ++ GK +HS 
Sbjct: 207 VTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSL 266

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ---------------------------- 267
                  S  NL  NA+I MY KCGD+ +A +                            
Sbjct: 267 SLKIGTESYINL-QNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDN 325

Query: 268 ---VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
              +F+ +  KD +SWS++ISG A N    + L LF  M ++   PD+ T +++ISAC+ 
Sbjct: 326 AKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACAR 385

Query: 325 GGLVDQGLILFKAMS----TVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 380
              ++QG  +   +     T+  I+        ++DMY + G +E A      M IE   
Sbjct: 386 LAALEQGKWVHAYIKRNGLTINVILG-----TTLIDMYMKCGCVETALEVFYGM-IEKGI 439

Query: 381 SVWGALL 387
           S W AL+
Sbjct: 440 STWNALI 446


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 158/454 (34%), Positives = 257/454 (56%), Gaps = 6/454 (1%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S + ++F   LKACS     +    +H  +  +G   D+F+QN L+  Y    +I  A+ 
Sbjct: 170 SPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANA 229

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVS 123
           +F  +V   +VSWT+IISG ++ G   EA+ +F  +   +V+P+   LVSVL A + +  
Sbjct: 230 VFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVED 289

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            + GK+IH   ++   E    L  ++   Y +CG +      F ++   +++ W  MI G
Sbjct: 290 LEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISG 349

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           Y + G+ +EA+ +F+ M K+K   P+  T+ + ++AC+ I +L   +++  YIS   +  
Sbjct: 350 YVKNGYAEEAIELFRLM-KSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMS-EFR 407

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
              +V  ++I+ Y KCG V +A  VF+ +  KD + WS ++ G  ++G GR+++ LF  M
Sbjct: 408 NDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAM 467

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
               V P+DVTF+ L++AC + GLV++G  LF  M   Y I P+ QHYACVVD+ GRAG 
Sbjct: 468 RQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRD-YGIEPRHQHYACVVDLLGRAGH 526

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           L+ A  F+  MPIE   SVWGALL+AC+IHR+  + +   + L +    + G +  +SN 
Sbjct: 527 LDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNL 586

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +A +  W+   K+R  +R  GL K  G S IE+N
Sbjct: 587 YASSCLWDCVAKVRVLMREKGLTKHLGYSVIEIN 620



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/421 (27%), Positives = 210/421 (49%), Gaps = 22/421 (5%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           +I+A ++  G  +  F+   L++    + ++  A ++F+    PDV  W  I+   S+ G
Sbjct: 93  QIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHG 152

Query: 91  FHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
           F   AI+M+  + V    P+  +   VL ACS+L + ++G+ +H    R+  E+++ + N
Sbjct: 153 FFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQN 212

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
            ++  Y +CG +     +F ++  R +VSWT++I GYA+ G   EA+ +F EM KT    
Sbjct: 213 GLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTN-VR 271

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYI-----STRYDLSVSNLVGNAVINMYVKCGDV 262
           P+   LV+VL A + +  L  GK +H  +        +DL +S      + ++Y KCG V
Sbjct: 272 PDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLIS------LTSLYAKCGHV 325

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
            +A   FN +     I W+ +ISG   NG   +A++LF LM    + PD +T  + I+AC
Sbjct: 326 MVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAAC 385

Query: 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
           +  G ++    + + +S + E    +     ++D Y + G ++ A      +P + +  V
Sbjct: 386 AQIGSLELARWMDEYIS-MSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIP-DKDVVV 443

Query: 383 WGALLNACRIHRNDE----MFDRIRQDLVNKKGVS-VGTFALMSNTFAGADRWEDTNKIR 437
           W A++    +H        +F  +RQ  V+   V+ VG      N+    + W+  +++R
Sbjct: 444 WSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMR 503

Query: 438 D 438
           D
Sbjct: 504 D 504


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 152/488 (31%), Positives = 265/488 (54%), Gaps = 46/488 (9%)

Query: 17  LKACSLAHPHQKALE----------IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           L+   L +P    LE          IHAH+I    + D+F  + L+   +    +  A Q
Sbjct: 9   LRKLELKNPKLSFLESCTTLSHLKIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQ 68

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVS 123
           +F  +  P++  + + I G S      ++   +       + P+  T   ++ AC+   S
Sbjct: 69  VFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGS 128

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFY------------------------------ 153
             +G   H   +R+  ++++ + N+++  Y                              
Sbjct: 129 LDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAG 188

Query: 154 -IRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEAT 212
            I+ G + S   LF KMP++N+V+W+ MI GYA+  F  +A+ ++  ++ ++    NE  
Sbjct: 189 YIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQ-SEGVHANETV 247

Query: 213 LVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 272
           +V+V+++C+ + AL  G+  H YI  R  ++V+ ++G A+++MY +CG +  AI VF+ L
Sbjct: 248 MVSVIASCAHLGALELGERAHDYI-LRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQL 306

Query: 273 AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL 332
             +D +SW+T+I+G AM+G   +AL+ FS M    + P ++TF A++SACSHGGLV++GL
Sbjct: 307 PGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGL 366

Query: 333 ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI 392
            LF++M   Y I P+++HY C+VD+ GRAG L EAE F+ EMP++    +WGALL ACRI
Sbjct: 367 ELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRI 426

Query: 393 HRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCS 452
           H+N E+ +R  + L+  K    G + L+SN +A  ++WE+   IR  ++  G+ K  G +
Sbjct: 427 HKNSEIAERAGKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYT 486

Query: 453 WIEVNPSI 460
             E++  +
Sbjct: 487 LFEMDGKV 494



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/404 (25%), Positives = 179/404 (44%), Gaps = 74/404 (18%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           ++ T+   +KAC+        ++ H  +I +G   D+++QNSL+  Y T+ DI SA  +F
Sbjct: 112 DNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVF 171

Query: 69  NSVVFPDVVSWTTIISGLSKCG-------------------------------FHKEAID 97
             +   DVVSWT++++G  K G                               F  +AI+
Sbjct: 172 RRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIE 231

Query: 98  MFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
           ++  +    V  N   +VSV+++C+ L + +LG+  H + LRN    N+IL  A++D Y 
Sbjct: 232 LYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYA 291

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           RCGS+    ++F ++P R+ +SWTT+I G+A  G+ ++A+  F  MEK     P E T  
Sbjct: 292 RCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAG-LTPREITFT 350

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
            VLSACS    +  G  +   +   Y +         ++++  + G +  A +  N +  
Sbjct: 351 AVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPM 410

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           K                                  P+   + AL+ AC    +     I 
Sbjct: 411 K----------------------------------PNAPIWGALLGACR---IHKNSEIA 433

Query: 335 FKAMSTVYEIVPQMQ-HYACVVDMYGRAGLLEEAEAFIREMPIE 377
            +A  T+ E+ P+   +Y  + ++Y R    E  E  IR+M  E
Sbjct: 434 ERAGKTLIELKPEHSGYYVLLSNIYARTNKWENVEN-IRQMMKE 476


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 161/491 (32%), Positives = 277/491 (56%), Gaps = 44/491 (8%)

Query: 11  YTFTQALKACS--LAHPHQKALEIHAHVIEYGHLH-DIFIQNSLLHFYVTVKDIFSAHQI 67
           +TF   LK  +  +A  + K L  HA +  +G L  ++F+Q   +H +     +  A +I
Sbjct: 136 FTFPFLLKGFTKDMALKYGKVLLNHAVI--HGFLDSNLFVQKGFIHLFSLCGLVNYARKI 193

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID-----VKPNANTLVSVLSACSSLV 122
           F+     +VV+W  ++SG ++   ++E+  +F  ++     V PN+ TLV +LSACS L 
Sbjct: 194 FDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLK 253

Query: 123 SHKLGKAIHAHSLRN-LNENNIILDNAILDFYIRCGSL-ASCGYL--------------- 165
               GK I+   ++  + E N+IL+NA++D +  CG + A+ G                 
Sbjct: 254 DLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIV 313

Query: 166 ---------------FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNE 210
                          F +MP+R+ VSWT MI GY      KE +++F++M+ +   +P+E
Sbjct: 314 TGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMS-NVKPDE 372

Query: 211 ATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN 270
            T+V++L+AC+ + AL  G++  +YI  +  +     +GNA+I+MY KCG+V  A ++FN
Sbjct: 373 FTMVSILTACAHLGALELGEWAKTYID-KNKIKNDTFIGNALIDMYFKCGNVEKAKKIFN 431

Query: 271 MLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQ 330
            +  KDK +W+ +I GLA NG G +AL +FS M+  +V PD++T+I ++ AC+H GLV +
Sbjct: 432 EMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAK 491

Query: 331 GLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 390
           G   F  M+  + I P + HY C+VD+ GRAG L+EA   I  MP++    VWG+LL AC
Sbjct: 492 GKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGAC 551

Query: 391 RIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTG 450
           R+H+N ++ +    +++  +  +   + L+ N +A   +W++ + +R  +   G+KK  G
Sbjct: 552 RVHKNVQLAEMAANEILELEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPG 611

Query: 451 CSWIEVNPSIF 461
           CS +E+N  ++
Sbjct: 612 CSLMEMNGIVY 622



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 94/400 (23%), Positives = 190/400 (47%), Gaps = 50/400 (12%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVK--DIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           +IH+  I+ G   +      ++ F  T +  D++ A ++F+ +  P V  W T+I G S+
Sbjct: 53  QIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQPSVFIWNTMIKGYSR 112

Query: 89  CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHS-LRNLNENNII 144
               +  + ++  +   ++KP+  T   +L   +  ++ K GK +  H+ +    ++N+ 
Sbjct: 113 INCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLF 172

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           +    +  +  CG +     +F       VV+W  ++ GY      +E+  +F EMEK  
Sbjct: 173 VQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKC 232

Query: 205 E-AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
           E   PN  TLV +LSACS +  L  GK +++       +  + ++ NA+I+M+  CG++ 
Sbjct: 233 ECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMD 292

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCG------------------------------ 293
            A  VF+ +  +D ISW+++++G A N C                               
Sbjct: 293 AARGVFDEMKTRDVISWTSIVTGFA-NTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMN 351

Query: 294 --RQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY 351
             ++ L LF  M ++ V PD+ T +++++AC+H G ++ G       +  Y    ++++ 
Sbjct: 352 RFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELG-----EWAKTYIDKNKIKND 406

Query: 352 A----CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
                 ++DMY + G +E+A+    EM  + +++ W A++
Sbjct: 407 TFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFT-WTAMI 445



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 136/300 (45%), Gaps = 11/300 (3%)

Query: 112 VSVLSACSSLVSHKLGKAIHAHSLRN-LNENNIILDNAILDFYIR-CGSLASCGYLFVKM 169
           +S+L  C+++        IH+ +++  L+ N++ L   I+    +  G +     +F ++
Sbjct: 39  ISLLETCNTMYEIN---QIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEI 95

Query: 170 PKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 229
           P+ +V  W TMI GY+     +  VS+++ M      +P+  T   +L   +   AL +G
Sbjct: 96  PQPSVFIWNTMIKGYSRINCSESGVSLYKLM-LVHNIKPDGFTFPFLLKGFTKDMALKYG 154

Query: 230 KYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAM 289
           K + ++      L  +  V    I+++  CG V  A ++F+M    + ++W+ V+SG   
Sbjct: 155 KVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNR 214

Query: 290 NGCGRQALQLFSLM--IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 347
                ++ +LF  M      V P+ VT + ++SACS    +  G  ++        + P 
Sbjct: 215 FKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPN 274

Query: 348 MQHYACVVDMYGRAGLLEEAEAFIREMPIE--AEW-SVWGALLNACRIHRNDEMFDRIRQ 404
           +     ++DM+   G ++ A     EM       W S+     N CRI    + FD++ +
Sbjct: 275 LILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPE 334



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 105/230 (45%), Gaps = 26/230 (11%)

Query: 9   NHYTFTQALKACSLAHPHQKALEI----HAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           + +T    L AC+    H  ALE+      ++ +    +D FI N+L+  Y    ++  A
Sbjct: 371 DEFTMVSILTACA----HLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKA 426

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSL 121
            +IFN +   D  +WT +I GL+  G  +EA+ MF  +    V P+  T + V+ AC+ +
Sbjct: 427 KKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHV 486

Query: 122 VSHKLGKAIHAH-SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTT 179
                GK   ++ ++++  + N+     ++D   R G L     + + MP K N + W +
Sbjct: 487 GLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGS 546

Query: 180 MIGGYAERGFCKEAVSV-FQEMEKTK--EAEPNEAT----LVNVLSACSS 222
           ++G       C+   +V   EM   +  E EP        L N+ +AC  
Sbjct: 547 LLGA------CRVHKNVQLAEMAANEILELEPENGAVYVLLCNIYAACKK 590


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 149/450 (33%), Positives = 268/450 (59%), Gaps = 7/450 (1%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           +   L  C      ++   +H H+I+  +L  ++++  L+  Y     +  A ++F+ + 
Sbjct: 93  YDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMP 152

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKA 129
             +VVSWT +IS  S+ GF  EA+++F  +   D +PN  T  ++L++C   +  + G+ 
Sbjct: 153 QKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQ 212

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           IH+ +++   E+++ + +++LD Y + G +     +F  +P+R+VV+ T +I GYA+ G 
Sbjct: 213 IHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGL 272

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
            +EA+ +F++++  +    N  T  +VL+A S ++AL+ GK VHS++      S   L+ 
Sbjct: 273 DEEALKLFRQLQ-IEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLL- 330

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII-NAV 308
           N++I+MY KCG+V  A ++F+ +  +  ISW+ ++ G + +G  R+ L+LF LM   N V
Sbjct: 331 NSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKV 390

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE-IVPQMQHYACVVDMYGRAGLLEEA 367
            PD +T++A++S CSHG L D GL +F  M    + I P + HY CVVD+ GRAG +EEA
Sbjct: 391 KPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEA 450

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
             FI++MP     ++WG+LL +CR+H + E+   + Q L+  +  + G + ++SN +A A
Sbjct: 451 FDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASA 510

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            +WED   IRD ++   + K+ G SW+E++
Sbjct: 511 GKWEDMRNIRDLMQEKAVTKEPGRSWVELD 540



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 178/372 (47%), Gaps = 44/372 (11%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML   +  NH+TF   L +C  +   +   +IH+  I+  +   +F+ +SLL  Y     
Sbjct: 182 MLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGR 241

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSA 117
           I  AH +F+ +   DVV+ T IISG ++ G  +EA+ +F  + ++    N+ T  SVL+A
Sbjct: 242 ICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTA 301

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
            S L +   GK +H+H LR+   + ++L N+++D Y +CG++     +F  MP+R  +SW
Sbjct: 302 LSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISW 361

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
             M+ GY++ G  +E + +F+ M +  + +P+  T + VLS CS           H  + 
Sbjct: 362 NAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCS-----------HGQLE 410

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR--Q 295
                                  D+G+ I  +NM+  KD I       G  ++  GR  +
Sbjct: 411 -----------------------DMGLEI-FYNMVNGKDGIEPDIGHYGCVVDLLGRAGR 446

Query: 296 ALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ-MQHYACV 354
             + F  +      P    + +L+ +C     V+ G+I+ + +    E+ P+   +Y  +
Sbjct: 447 VEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKL---LELEPENAGNYVIL 503

Query: 355 VDMYGRAGLLEE 366
            ++Y  AG  E+
Sbjct: 504 SNLYASAGKWED 515


>gi|357128066|ref|XP_003565697.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Brachypodium distachyon]
          Length = 564

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 153/474 (32%), Positives = 267/474 (56%), Gaps = 23/474 (4%)

Query: 1   MLSCPSSYNHYTFTQALKAC--SLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV 58
           ML+     N +T +  L AC    A    +   +HA  +  G  H  ++ N+L+  Y + 
Sbjct: 60  MLAAGVGPNEFTLSSVLTACRGGAADGGCEPSSLHAVAVRRGVDHMPYVVNALIEAYASC 119

Query: 59  KD---IFSAHQIFNSV-VFPDVVSWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNAN 109
           ++   +  + ++F+++       SWT++++G S+ G  +  + +F      GI++ P   
Sbjct: 120 EEGVGVEESRKLFDALGSGRTAASWTSMVAGYSRWGQEQTGLQLFQTMIQDGIELSPFTC 179

Query: 110 TLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKM 169
           ++   L AC+S+ +  +G+ +H   LR     N+ + N+++D Y  C +L     LF ++
Sbjct: 180 SIA--LHACASIANLCVGQQLHVLCLRKAFNANLTVANSLIDMYCSCANLLDARRLFDEI 237

Query: 170 PKRNVVSWTTMIGGYAERGFCKE--AVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 227
           P+RN+V+W TMI  Y++   C    A+ + +EM      +PN  TL ++ SAC+ +++L 
Sbjct: 238 PERNLVTWNTMIAWYSQ---CNHLMALQLLREMN----LQPNCFTLTSITSACAGLASLR 290

Query: 228 FGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGL 287
           FG+ VH   + R +      + NA+++MY KCG +  A ++FNM+ YKDK+SW+++I+G 
Sbjct: 291 FGQQVHG-AALRRNYGKDLQMCNALVDMYSKCGSIANAKKMFNMMDYKDKLSWTSMITGY 349

Query: 288 AMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 347
            MNG   +++QLF+ MI   V PD V F+ LI AC+HGGLVD+G   F++M++ Y + P 
Sbjct: 350 GMNGYANESIQLFTSMIHAGVHPDHVVFLGLICACNHGGLVDEGWNFFRSMTSEYNLQPN 409

Query: 348 MQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLV 407
            + Y CV ++  RAG L EA   I  MP   + +VWGALL AC++H+N E+     + ++
Sbjct: 410 KEIYGCVTNLLARAGRLREAFDLIHRMPFAPDETVWGALLGACKMHKNVELGRLAARKII 469

Query: 408 NKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
                   T+ L++N +A  ++W +    R  +R +G +K+ G SWI+V   I+
Sbjct: 470 EINPDRAKTYVLLANIYAAGNKWGEYADTRRLLRGIGSRKEAGTSWIDVTDKIY 523



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 163/343 (47%), Gaps = 33/343 (9%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSS 120
           A  +F+ +   DVV+WT ++SG +  G H  A+D+F       V PN  TL SVL+AC  
Sbjct: 22  ARAVFDEMPDRDVVAWTAMLSGYASNGCHSYALDLFRRMLAAGVGPNEFTLSSVLTACRG 81

Query: 121 LVSHK--LGKAIHAHSLRNLNENNIILDNAILDFYIRCG---SLASCGYLFVKM-PKRNV 174
             +       ++HA ++R   ++   + NA+++ Y  C     +     LF  +   R  
Sbjct: 82  GAADGGCEPSSLHAVAVRRGVDHMPYVVNALIEAYASCEEGVGVEESRKLFDALGSGRTA 141

Query: 175 VSWTTMIGGYAERGFCKEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
            SWT+M+ GY+  G  +  + +FQ M +   E  P   ++   L AC+SI+ L  G+ +H
Sbjct: 142 ASWTSMVAGYSRWGQEQTGLQLFQTMIQDGIELSPFTCSI--ALHACASIANLCVGQQLH 199

Query: 234 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG 293
             +  R   + +  V N++I+MY  C ++  A ++F+ +  ++ ++W+T+I+  +   C 
Sbjct: 200 -VLCLRKAFNANLTVANSLIDMYCSCANLLDARRLFDEIPERNLVTWNTMIAWYSQ--CN 256

Query: 294 R-QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV------P 346
              ALQL   M +    P+  T  ++ SAC+       GL   +    V+          
Sbjct: 257 HLMALQLLREMNLQ---PNCFTLTSITSACA-------GLASLRFGQQVHGAALRRNYGK 306

Query: 347 QMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
            +Q    +VDMY + G +  A+     M  + + S W +++  
Sbjct: 307 DLQMCNALVDMYSKCGSIANAKKMFNMMDYKDKLS-WTSMITG 348



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 113/242 (46%), Gaps = 20/242 (8%)

Query: 157 GSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNV 216
           G+L     +F +MP R+VV+WT M+ GYA  G    A+ +F+ M       PNE TL +V
Sbjct: 17  GALRHARAVFDEMPDRDVVAWTAMLSGYASNGCHSYALDLFRRMLAAG-VGPNEFTLSSV 75

Query: 217 LSACSSISALSFGK--YVHSYISTRYDLSVSNLVGNAVINMYVKCGD-VGI--AIQVFNM 271
           L+AC   +A    +   +H+ ++ R  +     V NA+I  Y  C + VG+  + ++F+ 
Sbjct: 76  LTACRGGAADGGCEPSSLHA-VAVRRGVDHMPYVVNALIEAYASCEEGVGVEESRKLFDA 134

Query: 272 LAY-KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQ 330
           L   +   SW+++++G +  G  +  LQLF  MI + +     T    + AC+    +  
Sbjct: 135 LGSGRTAASWTSMVAGYSRWGQEQTGLQLFQTMIQDGIELSPFTCSIALHACASIANLCV 194

Query: 331 G-----LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 385
           G     L L KA +    +   +      +DMY     L +A     E+P E     W  
Sbjct: 195 GQQLHVLCLRKAFNANLTVANSL------IDMYCSCANLLDARRLFDEIP-ERNLVTWNT 247

Query: 386 LL 387
           ++
Sbjct: 248 MI 249


>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
          Length = 546

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 154/462 (33%), Positives = 250/462 (54%), Gaps = 53/462 (11%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +T+   +KACS     ++ +  H   +  G   D+F+  SL+  Y    +I  A ++F
Sbjct: 122 DKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVF 181

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
           + +   +VVSWT +I+G +      EA  +F   D  P                      
Sbjct: 182 DEMGERNVVSWTAMIAGYASFSDLVEARKLF---DEMP---------------------- 216

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
                      E N +  NAI+  Y++CG L S   +F +MP RNVVS+TTMI GYA+ G
Sbjct: 217 -----------EKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSG 265

Query: 189 FCKEAVSVFQEMEKTK---------------EAEPNEATLVNVLSACSSISALSFGKYVH 233
               A  VF+E  +                   +P+E  +V+++SACS + +L   K+V 
Sbjct: 266 DMASARFVFEEAPERDVVAWSALIFRVCAEWNVKPDEFIMVSLMSACSQMGSLELAKWVD 325

Query: 234 SYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
            Y+  +  D+  ++++  A+I+M  KCG +  A ++F  +  +D IS+ +++ GL+++GC
Sbjct: 326 DYVRKSSIDVHRAHVIA-ALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGC 384

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
           G QA+ LFS M+   + PDDV F  +++ACS  GLVD+G   F++M T Y IVP   HYA
Sbjct: 385 GPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYA 444

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           C+VD+ GRAG L+EA   ++ MP+E     WGALL AC++H + E+ + +   L   +  
Sbjct: 445 CMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGEVVADQLFELEPQ 504

Query: 413 SVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           + G + L+SN +A A++W D + +R+++R  G++K  GCSWI
Sbjct: 505 NAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCSWI 546



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 168/383 (43%), Gaps = 63/383 (16%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           + +  LKAC+     +   ++HA +I  G   D F+ +  L    ++ +      +FN V
Sbjct: 27  SISTLLKACTTTSTLE---QVHARIIRKGLHQDHFLISQFLTLCNSLSNFSYTTSVFNGV 83

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
             P  V W T I G S+       + +F  +   D  P+  T  S++ ACS +   K G 
Sbjct: 84  SSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGV 143

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
           A H  ++R     ++ +  +++D Y +CG +     +F +M +RNVVSWT MI GYA   
Sbjct: 144 AFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFS 203

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
              EA  +F EM +                     +A+S+                    
Sbjct: 204 DLVEARKLFDEMPEK--------------------NAVSW-------------------- 223

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF-------- 300
            NA+I+ YVKCGD+  A ++F+ + +++ +S++T+I G A +G    A  +F        
Sbjct: 224 -NAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPERDV 282

Query: 301 ---SLMIINA-----VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
              S +I        V PD+   ++L+SACS  G ++    +   +      V +    A
Sbjct: 283 VAWSALIFRVCAEWNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIA 342

Query: 353 CVVDMYGRAGLLEEAEAFIREMP 375
            ++DM  + G ++ A     EMP
Sbjct: 343 ALIDMNAKCGSMDRATKLFEEMP 365


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 157/465 (33%), Positives = 265/465 (56%), Gaps = 13/465 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNS--LLHFYVTV 58
           M    ++ N  TF   L  C+         ++H  V+  G   D  + N+  L+  Y   
Sbjct: 239 MRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKC 298

Query: 59  KDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVL 115
           +D+  A +IF+     D+V  T +ISG    G +  A+++F  +    ++ N+ TL SVL
Sbjct: 299 RDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVL 358

Query: 116 SACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVV 175
            AC+ L +  LGK +H H L+N +  +  + +AI+D Y +CG L      F+ +  ++ V
Sbjct: 359 PACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAV 418

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
            W +MI   ++ G  +EA+ +F++M      + +  ++   LSAC+++ AL +GK +H++
Sbjct: 419 CWNSMITSCSQNGKPEEAIDLFRQMGMAG-TKYDCVSISAALSACANLPALHYGKEIHAF 477

Query: 236 I---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
           +   + R DL       +A+I+MY KCG++ +A +VF+ +  K+++SW+++I+    +G 
Sbjct: 478 MMRGAFRSDL----FAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGR 533

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
            + +L LF  M+ + + PD VTF+A+ISAC H G VD+G+  F+ M+    I+ +M+HYA
Sbjct: 534 LKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYA 593

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           C+VD++GRAG L EA   I  MP   +  VWG LL ACR+H N E+ +   ++L +    
Sbjct: 594 CMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQ 653

Query: 413 SVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           + G + L+SN  A A +WE   KIR  ++  G++K  GCSWI+VN
Sbjct: 654 NSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCSWIDVN 698



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/399 (27%), Positives = 191/399 (47%), Gaps = 19/399 (4%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML C +  + YTF   +KAC   +       +H  +   G   D+F+ +SL+ FY     
Sbjct: 138 MLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGC 197

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           I  A  +F+ +   D V W  +++G  K G    A  +F  +   +  PN+ T   VLS 
Sbjct: 198 IHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSV 257

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDN--AILDFYIRCGSLASCGYLFVKMPKRNVV 175
           C+S +    G  +H   + +  E +  + N  A++D Y +C  +     +F +    ++V
Sbjct: 258 CASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIV 317

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
             T MI GY   G    A+ +F+ + + +    N  TL +VL AC+ ++AL+ GK +H +
Sbjct: 318 VCTAMISGYVLNGMNNNALEIFRWLLQER-MRANSVTLASVLPACAGLAALTLGKELHGH 376

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
           I  +     S  VG+A+++MY KCG + +A Q F  ++ KD + W+++I+  + NG   +
Sbjct: 377 I-LKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEE 435

Query: 296 ALQLFSLMIINAVFPDDVTFIALISACS-----HGGLVDQGLILFKAMSTVYEIVPQMQH 350
           A+ LF  M +     D V+  A +SAC+     H G      ++  A  +       +  
Sbjct: 436 AIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRS------DLFA 489

Query: 351 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
            + ++DMY + G L+ A      M  + E S W +++ A
Sbjct: 490 ESALIDMYSKCGNLDLACRVFDTMEEKNEVS-WNSIIAA 527



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 185/400 (46%), Gaps = 22/400 (5%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           L+ C+      +  + HA ++  G  ++  +   LL  YV       A  IF  +     
Sbjct: 53  LQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCS 112

Query: 77  VSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAH 133
             W  +I G +  G    A+  +    G    P+  T   V+ AC  L S  LG+ +H  
Sbjct: 113 EPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDK 172

Query: 134 SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
                 E ++ + ++++ FY   G +    YLF +MP ++ V W  M+ GY + G    A
Sbjct: 173 IQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNA 232

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGN--A 251
             VF EM +T E  PN  T   VLS C+S   ++FG  +H  + +   L + + V N  A
Sbjct: 233 TGVFMEMRRT-ETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSS-GLEMDSPVANTFA 290

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD 311
           +I++Y KC DV +A ++F+     D +  + +ISG  +NG    AL++F  ++   +  +
Sbjct: 291 LIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRAN 350

Query: 312 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC-----VVDMYGRAGLLEE 366
            VT  +++ AC+  GL    L L K +     I+      +C     ++DMY + G L+ 
Sbjct: 351 SVTLASVLPACA--GLA--ALTLGKELHG--HILKNGHGGSCYVGSAIMDMYAKCGRLDL 404

Query: 367 A-EAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDRIRQ 404
           A + FI     +A    W +++ +C  + + +E  D  RQ
Sbjct: 405 AHQTFIGISDKDA--VCWNSMITSCSQNGKPEEAIDLFRQ 442



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 127/273 (46%), Gaps = 6/273 (2%)

Query: 108 ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFV 167
           A  LVS+L  C+       G+  HA  L N    N IL   +L  Y+ CG+      +F 
Sbjct: 46  APQLVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFY 105

Query: 168 KMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 227
           ++       W  MI G+   G    A+  + +M       P++ T   V+ AC  +++++
Sbjct: 106 QLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTL-PDKYTFPYVIKACGGLNSVA 164

Query: 228 FGKYVHSYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
            G+ VH  I    ++L V   VG+++I  Y + G +  A  +F+ +  KD + W+ +++G
Sbjct: 165 LGRVVHDKIQFMGFELDV--FVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNG 222

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFK-AMSTVYEIV 345
              NG    A  +F  M      P+ VTF  ++S C+   +++ G  L    +S+  E+ 
Sbjct: 223 YVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMD 282

Query: 346 PQMQHYACVVDMYGRAGLLEEAEA-FIREMPIE 377
             + +   ++D+Y +   +E A   F +  P++
Sbjct: 283 SPVANTFALIDIYFKCRDVEMARKIFDQRTPVD 315


>gi|356557931|ref|XP_003547263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 764

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 147/432 (34%), Positives = 256/432 (59%), Gaps = 5/432 (1%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           +H  ++      D  ++ SL+  Y+   +I  A ++F   +  DVV WT +ISGL + G 
Sbjct: 290 LHGQILRTCFDLDAHVETSLIVMYLKGGNIDIAFRMFERSLDKDVVLWTAMISGLVQNGS 349

Query: 92  HKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148
             +A+ +F       VK +  T+ SV++AC+ L S+ LG ++H +  R+    +I   N+
Sbjct: 350 ADKALAVFRQMLKFGVKSSTATMASVITACAQLGSYNLGTSVHGYMFRHELPMDIATQNS 409

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
           ++  + +CG L     +F KM KRN+VSW  MI GYA+ G+  +A+ +F EM ++    P
Sbjct: 410 LVTMHAKCGHLDQSSIVFDKMNKRNLVSWNAMITGYAQNGYVCKALFLFNEM-RSDHQTP 468

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           +  T+V++L  C+S   L  GK++HS++  R  L    LV  ++++MY KCGD+ IA + 
Sbjct: 469 DSITIVSLLQGCASTGQLHLGKWIHSFV-IRNGLRPCILVDTSLVDMYCKCGDLDIAQRC 527

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           FN +   D +SWS +I G   +G G  AL+ +S  + + + P+ V F++++S+CSH GLV
Sbjct: 528 FNQMPSHDLVSWSAIIVGYGYHGKGETALRFYSKFLESGMKPNHVIFLSVLSSCSHNGLV 587

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
           +QGL ++++M+  + I P ++H+ACVVD+  RAG +EEA    ++   +    V G +L+
Sbjct: 588 EQGLNIYESMTRDFGIAPNLEHHACVVDLLSRAGRVEEAYNLYKKKFSDPVLDVLGIILD 647

Query: 389 ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
           ACR + N+E+ D I  D++  K +  G F  +++ +A  ++WE+  +    +R +GLKK 
Sbjct: 648 ACRANGNNELGDTIANDILMLKPMDAGNFVQLAHCYASINKWEEVGEAWTHMRSLGLKKI 707

Query: 449 TGCSWIEVNPSI 460
            G S+I+++ +I
Sbjct: 708 PGWSFIDIHGTI 719



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 196/369 (53%), Gaps = 7/369 (1%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           +H   I YG + DI + NS+L  Y   ++I  + ++F+ +   D+VSW +++S  ++ G+
Sbjct: 189 LHGSAILYGFMSDINLSNSMLSMYGKCRNIEYSRKLFDYMDQRDLVSWNSLVSAYAQIGY 248

Query: 92  HKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148
             E + +   + ++   P+  T  SVLS  +S    KLG+ +H   LR   + +  ++ +
Sbjct: 249 ICEVLLLLKTMRIQGFEPDPQTFGSVLSVAASRGELKLGRCLHGQILRTCFDLDAHVETS 308

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
           ++  Y++ G++     +F +   ++VV WT MI G  + G   +A++VF++M K    + 
Sbjct: 309 LIVMYLKGGNIDIAFRMFERSLDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFG-VKS 367

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           + AT+ +V++AC+ + + + G  VH Y+  R++L +     N+++ M+ KCG +  +  V
Sbjct: 368 STATMASVITACAQLGSYNLGTSVHGYM-FRHELPMDIATQNSLVTMHAKCGHLDQSSIV 426

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F+ +  ++ +SW+ +I+G A NG   +AL LF+ M  +   PD +T ++L+  C+  G +
Sbjct: 427 FDKMNKRNLVSWNAMITGYAQNGYVCKALFLFNEMRSDHQTPDSITIVSLLQGCASTGQL 486

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
             G  +  +      + P +     +VDMY + G L+ A+    +MP   +   W A++ 
Sbjct: 487 HLGKWI-HSFVIRNGLRPCILVDTSLVDMYCKCGDLDIAQRCFNQMP-SHDLVSWSAIIV 544

Query: 389 ACRIHRNDE 397
               H   E
Sbjct: 545 GYGYHGKGE 553



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/378 (28%), Positives = 191/378 (50%), Gaps = 11/378 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML      + YTF   LKACS  +     L +H  ++  G   D +I +SL++FY     
Sbjct: 60  MLKTHVPSDAYTFPSLLKACSSLNLFSLGLSLHQRILVSGLSLDAYIASSLINFYAKFGF 119

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
              A ++F+ +   +VV WT+II   S+ G   EA  +F  +    ++P++ T++S+L  
Sbjct: 120 ADVARKVFDFMPERNVVPWTSIIGCYSRTGRVPEAFSLFDEMRRQGIQPSSVTMLSLLFG 179

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
            S L      + +H  ++     ++I L N++L  Y +C ++     LF  M +R++VSW
Sbjct: 180 VSELAH---VQCLHGSAILYGFMSDINLSNSMLSMYGKCRNIEYSRKLFDYMDQRDLVSW 236

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI- 236
            +++  YA+ G+  E + + + M + +  EP+  T  +VLS  +S   L  G+ +H  I 
Sbjct: 237 NSLVSAYAQIGYICEVLLLLKTM-RIQGFEPDPQTFGSVLSVAASRGELKLGRCLHGQIL 295

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
            T +DL     V  ++I MY+K G++ IA ++F     KD + W+ +ISGL  NG   +A
Sbjct: 296 RTCFDLDAH--VETSLIVMYLKGGNIDIAFRMFERSLDKDVVLWTAMISGLVQNGSADKA 353

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
           L +F  M+   V     T  ++I+AC+  G  + G  +   M   +E+   +     +V 
Sbjct: 354 LAVFRQMLKFGVKSSTATMASVITACAQLGSYNLGTSVHGYMFR-HELPMDIATQNSLVT 412

Query: 357 MYGRAGLLEEAEAFIREM 374
           M+ + G L+++     +M
Sbjct: 413 MHAKCGHLDQSSIVFDKM 430



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 167/319 (52%), Gaps = 18/319 (5%)

Query: 78  SWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHS 134
           S+  II+  S  G H++ +  +  +    V  +A T  S+L ACSSL    LG ++H   
Sbjct: 36  SFNAIINHHSSQGAHRQVLATYASMLKTHVPSDAYTFPSLLKACSSLNLFSLGLSLHQRI 95

Query: 135 LRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAV 194
           L +    +  + +++++FY + G       +F  MP+RNVV WT++IG Y+  G   EA 
Sbjct: 96  LVSGLSLDAYIASSLINFYAKFGFADVARKVFDFMPERNVVPWTSIIGCYSRTGRVPEAF 155

Query: 195 SVFQEMEKTKEAEPNEATLVNVL---SACSSISALSFGKYVHSYISTRYDLSVSNLVGNA 251
           S+F EM + +  +P+  T++++L   S  + +  L     ++ ++S   D+++S    N+
Sbjct: 156 SLFDEMRR-QGIQPSSVTMLSLLFGVSELAHVQCLHGSAILYGFMS---DINLS----NS 207

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD 311
           +++MY KC ++  + ++F+ +  +D +SW++++S  A  G   + L L   M I    PD
Sbjct: 208 MLSMYGKCRNIEYSRKLFDYMDQRDLVSWNSLVSAYAQIGYICEVLLLLKTMRIQGFEPD 267

Query: 312 DVTFIALISACSHGGLVDQGLILF-KAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAF 370
             TF +++S  +  G +  G  L  + + T +++   ++    ++ MY + G ++ A   
Sbjct: 268 PQTFGSVLSVAASRGELKLGRCLHGQILRTCFDLDAHVE--TSLIVMYLKGGNIDIAFRM 325

Query: 371 IREMPIEAEWSVWGALLNA 389
             E  ++ +  +W A+++ 
Sbjct: 326 F-ERSLDKDVVLWTAMISG 343



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 146/286 (51%), Gaps = 12/286 (4%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    + AC+    +     +H ++  +    DI  QNSL+  +     +  +  +F+ +
Sbjct: 371 TMASVITACAQLGSYNLGTSVHGYMFRHELPMDIATQNSLVTMHAKCGHLDQSSIVFDKM 430

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGK 128
              ++VSW  +I+G ++ G+  +A+ +F  +      P++ T+VS+L  C+S     LGK
Sbjct: 431 NKRNLVSWNAMITGYAQNGYVCKALFLFNEMRSDHQTPDSITIVSLLQGCASTGQLHLGK 490

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IH+  +RN     I++D +++D Y +CG L      F +MP  ++VSW+ +I GY   G
Sbjct: 491 WIHSFVIRNGLRPCILVDTSLVDMYCKCGDLDIAQRCFNQMPSHDLVSWSAIIVGYGYHG 550

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
             + A+  + +  ++   +PN    ++VLS+CS    +  G  ++  ++  + ++  NL 
Sbjct: 551 KGETALRFYSKFLESG-MKPNHVIFLSVLSSCSHNGLVEQGLNIYESMTRDFGIA-PNLE 608

Query: 249 GNA-VINMYVKCGDVGIAIQVFNMLAYKDKISWSTV-ISGLAMNGC 292
            +A V+++  + G V    + +N+  YK K S   + + G+ ++ C
Sbjct: 609 HHACVVDLLSRAGRVE---EAYNL--YKKKFSDPVLDVLGIILDAC 649


>gi|326495056|dbj|BAJ85624.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 148/449 (32%), Positives = 259/449 (57%), Gaps = 5/449 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YT    L AC++     +   +H  VI++G + + FI  ++L  YV   ++  A ++F
Sbjct: 222 SEYTMASVLMACTMLGSLHQGRWVHGSVIKHGMVFNPFITAAVLDMYVKCGEVEDARRLF 281

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLVSHK 125
           + + F D+V WTT+I G ++ G   +A+ +F     + + PN+ T+ +VLSA + L +  
Sbjct: 282 DELGFVDLVLWTTMIVGYTQNGSPLDALLLFSDKKFVHIVPNSVTIATVLSASAQLRNLS 341

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG+ IHA S++ L   N ++ NA++D Y +C +L+    +F ++  ++VV+W ++I GY 
Sbjct: 342 LGRLIHAMSVKLLVIENDVVMNALVDMYAKCKALSEANGIFGRISNKDVVTWNSLIAGYV 401

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           E     EA+ +F +M + + + P+  ++VN LSAC  +  L  GK  H+Y   R  LS +
Sbjct: 402 ENDMGNEALMLFSQM-RVQGSSPDAISIVNALSACVCLGDLLIGKCFHTYAVKRAFLS-N 459

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V  A++N+Y KC D+  A +VF+ ++ ++ ++W  +I G  M G    ++ L + M+ 
Sbjct: 460 VYVNTALLNLYNKCADLPSAQRVFSEMSERNSVTWGAMIGGYGMQGDSAGSIDLLNKMLK 519

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
           + + P++V F +++S CSH G+V  G + F +M+  + I P M+HYAC+VD+  RAG LE
Sbjct: 520 DNIQPNEVVFTSILSTCSHTGMVSVGKMCFDSMAQYFNITPSMKHYACMVDVLARAGNLE 579

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EA  FI++MP+ A+ S+WGA L+ C++H   E  +     ++         + LMSN + 
Sbjct: 580 EALEFIQKMPMPADISIWGAFLHGCKLHSRLEFGEEAINRMMVLHPDKPDFYVLMSNLYT 639

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
              RW+ +  IR  ++  GL K  GCS +
Sbjct: 640 SYGRWDKSLAIRRLMQERGLVKLPGCSSV 668



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 205/390 (52%), Gaps = 9/390 (2%)

Query: 4   CPSSYNHYTF-TQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIF 62
           CP +++     + ALKA   +   +    +H + ++ G   D F+ N L+  Y    D+ 
Sbjct: 116 CPEAHDDVVLLSLALKASVRSADFRYGRRLHCNAVKAGGA-DGFVMNCLVDMYAKAGDLE 174

Query: 63  SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACS 119
           +A ++F+ ++  +VVSWT+++SG  + GF +E + +F  +    V P+  T+ SVL AC+
Sbjct: 175 NARKVFDRILGRNVVSWTSMLSGCLQNGFAEEGLALFNEMREERVLPSEYTMASVLMACT 234

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
            L S   G+ +H   +++    N  +  A+LD Y++CG +     LF ++   ++V WTT
Sbjct: 235 MLGSLHQGRWVHGSVIKHGMVFNPFITAAVLDMYVKCGEVEDARRLFDELGFVDLVLWTT 294

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           MI GY + G   +A+ +F + +K     PN  T+  VLSA + +  LS G+ +H+ +S +
Sbjct: 295 MIVGYTQNGSPLDALLLFSD-KKFVHIVPNSVTIATVLSASAQLRNLSLGRLIHA-MSVK 352

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
             +  +++V NA+++MY KC  +  A  +F  ++ KD ++W+++I+G   N  G +AL L
Sbjct: 353 LLVIENDVVMNALVDMYAKCKALSEANGIFGRISNKDVVTWNSLIAGYVENDMGNEALML 412

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
           FS M +    PD ++ +  +SAC   G +  G   F   +     +  +     ++++Y 
Sbjct: 413 FSQMRVQGSSPDAISIVNALSACVCLGDLLIGKC-FHTYAVKRAFLSNVYVNTALLNLYN 471

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           +   L  A+    EM  E     WGA++  
Sbjct: 472 KCADLPSAQRVFSEMS-ERNSVTWGAMIGG 500



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 186/359 (51%), Gaps = 12/359 (3%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           L AC+   P  +AL  HA ++ +G L  +  +  LL  Y  + D+ SA ++ +    PD 
Sbjct: 30  LPACATL-PSLRAL--HARLLAHGLLRALRARTKLLSCYAALGDLASARRVLDETPRPDP 86

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGIDVK-PNANTLVSVLS----ACSSLVSHKLGKAIH 131
            ++   +   +  G H +A+ +  G+  + P A+  V +LS    A       + G+ +H
Sbjct: 87  YTYRVALGWHAAAGRHADALALHRGMRRRCPEAHDDVVLLSLALKASVRSADFRYGRRLH 146

Query: 132 AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
            ++++    +  ++ N ++D Y + G L +   +F ++  RNVVSWT+M+ G  + GF +
Sbjct: 147 CNAVKAGGADGFVM-NCLVDMYAKAGDLENARKVFDRILGRNVVSWTSMLSGCLQNGFAE 205

Query: 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNA 251
           E +++F EM + +   P+E T+ +VL AC+ + +L  G++VH  +  ++ +  +  +  A
Sbjct: 206 EGLALFNEM-REERVLPSEYTMASVLMACTMLGSLHQGRWVHGSV-IKHGMVFNPFITAA 263

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD 311
           V++MYVKCG+V  A ++F+ L + D + W+T+I G   NG    AL LFS      + P+
Sbjct: 264 VLDMYVKCGEVEDARRLFDELGFVDLVLWTTMIVGYTQNGSPLDALLLFSDKKFVHIVPN 323

Query: 312 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAF 370
            VT   ++SA +    +  G  L  AMS    ++        +VDMY +   L EA   
Sbjct: 324 SVTIATVLSASAQLRNLSLGR-LIHAMSVKLLVIENDVVMNALVDMYAKCKALSEANGI 381


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 151/450 (33%), Positives = 260/450 (57%), Gaps = 7/450 (1%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           + +   L AC      ++   +HAH+I+  +L   +++  LL FY     +  A ++ + 
Sbjct: 52  HCYDALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDE 111

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLG 127
           +   +VVSWT +IS  S+ G   EA+ +F  +   D KPN  T  +VL++C       LG
Sbjct: 112 MPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALG 171

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           K IH   ++   +++I + +++LD Y + G +     +F  +P+R+VVS T +I GYA+ 
Sbjct: 172 KQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQL 231

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G  +EA+ +FQ ++ ++   PN  T  ++L+A S ++ L  GK  H ++  R +L    +
Sbjct: 232 GLDEEALEMFQRLQ-SEGMRPNYVTYASLLTALSGLALLDHGKQAHCHV-LRRELPFYAV 289

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           + N++I+MY KCG++  A ++F+ +  +  ISW+ ++ G + +G GR+ L+LF LM    
Sbjct: 290 LQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEK 349

Query: 308 -VFPDDVTFIALISACSHGGLVDQGLILFKAM-STVYEIVPQMQHYACVVDMYGRAGLLE 365
            V PD VT +A++S CSHG + D GL ++  M +  Y I P  +HY C+VDM GRAG ++
Sbjct: 350 RVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRID 409

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EA  FI+ MP +    V G+LL ACR+H + ++ + +   L+  +  + G + ++SN +A
Sbjct: 410 EAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYA 469

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
            A RWED N +R  + +  + K+ G SWI+
Sbjct: 470 SAGRWEDVNNVRAMMMQKAVTKEPGRSWIQ 499



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 137/279 (49%), Gaps = 4/279 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+      N +TF   L +C  A       +IH  ++++ +   IF+ +SLL  Y     
Sbjct: 143 MMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQ 202

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           I  A +IF  +   DVVS T II+G ++ G  +EA++MF  +    ++PN  T  S+L+A
Sbjct: 203 IEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTA 262

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
            S L     GK  H H LR       +L N+++D Y +CG+L+    LF  MP+R  +SW
Sbjct: 263 LSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERTAISW 322

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS-YI 236
             M+ GY++ G  +E + +F+ M   K  +P+  TL+ VLS CS       G  ++   +
Sbjct: 323 NAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMV 382

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           +  Y +         +++M  + G +  A +    +  K
Sbjct: 383 AGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSK 421


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 147/452 (32%), Positives = 259/452 (57%), Gaps = 39/452 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +T+    KACS+A   Q+  +IH HV+++G   D+ I+++ +H Y +   +  A ++F
Sbjct: 131 NKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMF 190

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
            S    DVV W T+I G  K           CG            VL A   L +     
Sbjct: 191 YSGE-SDVVCWNTMIDGYLK-----------CG------------VLEAAKGLFAQM--- 223

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
                 ++N+   N++++        + G+L     LF +M +R+ +SW++M+ GY   G
Sbjct: 224 -----PVKNIGSWNVMING-----LAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAG 273

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
             KEA+ +FQ+M++ +E  P    L +VL+ACS+I A+  G++VH+Y+  R  + +  ++
Sbjct: 274 RYKEALEIFQQMQR-EETRPGRFILSSVLAACSNIGAIDQGRWVHAYLK-RNSIKLDAVL 331

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
           G A+++MY KCG + +  +VF  +  ++  +W+ +I GLA++G    AL+LFS +    +
Sbjct: 332 GTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRM 391

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            P+ +T + +++AC+H G VD+GL +F+ M   Y + P+++HY C+VD+ GR+GL  EAE
Sbjct: 392 KPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAE 451

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
             I  MP++   +VWGALL ACRIH N ++ +R+ + L+  +  + G + L+SN +A   
Sbjct: 452 DLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVG 511

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           R++D +KIR  ++  G+K   G S +++N ++
Sbjct: 512 RFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTV 543


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 163/496 (32%), Positives = 266/496 (53%), Gaps = 48/496 (9%)

Query: 2   LSCPSSYNHYTFTQALKA-CSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
            S PS   H TF Q LK   SL    Q    IHA V+ +G   +  +   L+H Y+  ++
Sbjct: 50  FSLPS---HSTFVQLLKKRPSLTQIKQ----IHAQVVTHGLAQNTSLLGPLIHSYIGCRN 102

Query: 61  IFSAHQIFNSVV-FPDVVSWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNANTLVSV 114
           +  A  +F+     P  + W  +I   SK    +E++ +F      G     +  T   V
Sbjct: 103 LSFARIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFV 162

Query: 115 LSACSSLVSHK-LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
            +ACS   + +  G+ +H   +++  E++I + N++++ Y     +     +F +MP+R+
Sbjct: 163 FTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRD 222

Query: 174 VVSWTTMIGGYAERG-------------------------------FCKEAVSVFQEMEK 202
           V++WT+++ GYA RG                               F  EA+  F +M  
Sbjct: 223 VITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLC 282

Query: 203 TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 262
             E +PNEA LV++LSAC+ + AL  GK++H YI     L  SN +  A+I+MY KCG +
Sbjct: 283 HDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSN-ISTALIDMYAKCGRI 341

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
             A +VF+ L  +D ++W+++ISGL+M+G G + L  FS M+     PDD+T + +++ C
Sbjct: 342 DCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGC 401

Query: 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
           SH GLV++GL +F  M  ++ IVP+++HY C++D+ GRAG LE A   I+ MP+E +   
Sbjct: 402 SHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVA 461

Query: 383 WGALLNACRIHRNDEMFDRIRQDLVNK-KGVSVGTFALMSNTFAGADRWEDTNKIRDEIR 441
           W ALL+ACRIH + ++ +RI   +     G   G + L+SN +A   +WE   K+R  + 
Sbjct: 462 WRALLSACRIHGDVDLGERIINHIAELCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMS 521

Query: 442 RMGLKKKTGCSWIEVN 457
           + G +   GCSWIE++
Sbjct: 522 QRGSEGCPGCSWIEID 537


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 157/437 (35%), Positives = 256/437 (58%), Gaps = 10/437 (2%)

Query: 29  ALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
            ++IHA+ ++ G   D+ + NSL+  Y     +     IF+ +   DVVSWTTII+G ++
Sbjct: 438 GMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQ 497

Query: 89  CGFHKEAIDMFC-----GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNI 143
            G H  A+++F      GID+  +   + S+L ACS L      K IH++ +R    +++
Sbjct: 498 NGSHSRALELFREVQLEGIDL--DVMMISSILLACSGLKLISSVKEIHSYIIRK-GLSDL 554

Query: 144 ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
           +L N I+D Y  CG++     +F  +  ++VVSWT+MI  Y   G   EA+ +F  M++T
Sbjct: 555 VLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKET 614

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
              EP+  +LV++LSA +S+SAL  GK +H ++  R    +   + + +++MY +CG + 
Sbjct: 615 G-VEPDSISLVSILSAAASLSALKKGKEIHGFL-IRKGFVLEGSLASTLVDMYARCGTLE 672

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
            +  VFN +  KD + W+++I+   M+GCGR A+ LF  M   ++ PD + F+A++ ACS
Sbjct: 673 KSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACS 732

Query: 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 383
           H GL+++G    ++M   Y++ P  +HY C+VD+ GRA  LEEA  F++ M +E    VW
Sbjct: 733 HSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVW 792

Query: 384 GALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443
            ALL AC+IH N E+ +   Q L+     + G + L+SN +A   RW+D  ++R  ++  
Sbjct: 793 CALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKAS 852

Query: 444 GLKKKTGCSWIEVNPSI 460
           GLKK  GCSWIEV   +
Sbjct: 853 GLKKNPGCSWIEVGNKV 869



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/403 (28%), Positives = 226/403 (56%), Gaps = 38/403 (9%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YTF  AL+AC  +   ++ + IHA V++  +  ++F+ N+L+  Y     +  A  IF
Sbjct: 317 NTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIF 376

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
            ++   D +SW +++SG  + G + EA+  +  +     KP+   ++S+++A +   +  
Sbjct: 377 YNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTL 436

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G  IHA++++N  ++++ + N+++D Y +  S+     +F KMP ++VVSWTT+I G+A
Sbjct: 437 NGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHA 496

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G    A+ +F+E++  +  + +   + ++L ACS +  +S  K +HSYI  +    +S
Sbjct: 497 QNGSHSRALELFREVQ-LEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRK---GLS 552

Query: 246 NLV-GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           +LV  N ++++Y +CG+V  A ++F ++ +KD +SW+++IS    NG   +AL+LF LM 
Sbjct: 553 DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMK 612

Query: 305 INAVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
              V PD ++ ++++SA +           HG L+ +G +L  ++++             
Sbjct: 613 ETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLAST------------ 660

Query: 354 VVDMYGRAGLLEEAE---AFIREMPIEAEWSVWGALLNACRIH 393
           +VDMY R G LE++     FIR      +  +W +++NA  +H
Sbjct: 661 LVDMYARCGTLEKSRNVFNFIR----NKDLVLWTSMINAYGMH 699



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 114/417 (27%), Positives = 209/417 (50%), Gaps = 25/417 (5%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           TF   LKAC L    +   E+H   I+ G++  +F+ NS++  Y    D+  A Q+F+ +
Sbjct: 218 TFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRM 277

Query: 72  VFP-DVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLG 127
               DVVSW ++IS  S  G   EA+ +F  +    + PN  T V+ L AC      K G
Sbjct: 278 PEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQG 337

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
             IHA  L++    N+ + NA++  Y R G +     +F  M   + +SW +M+ G+ + 
Sbjct: 338 MFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQN 397

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G   EA+  + EM    + +P+   ++++++A +       G  +H+Y + +  L     
Sbjct: 398 GLYHEALQFYHEMRDAGQ-KPDLVAVISIIAASARSGNTLNGMQIHAY-AMKNGLDSDLQ 455

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           VGN++++MY K   +     +F+ +  KD +SW+T+I+G A NG   +AL+LF  + +  
Sbjct: 456 VGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEG 515

Query: 308 VFPDDVTFIALISACSHGGLVD-----QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
           +  D +   +++ ACS   L+         I+ K +S   ++V Q      +VD+YG  G
Sbjct: 516 IDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS---DLVLQ----NGIVDVYGECG 568

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACRIHR---ND--EMFDRIRQDLVNKKGVSV 414
            ++ A A + E+    +   W +++ +C +H    N+  E+F  +++  V    +S+
Sbjct: 569 NVDYA-ARMFELIEFKDVVSWTSMI-SCYVHNGLANEALELFHLMKETGVEPDSISL 623



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/378 (26%), Positives = 182/378 (48%), Gaps = 11/378 (2%)

Query: 5   PSSYN-HYTFTQALKACSLAHPHQKALEIHAHVIEYGHL-HDIFIQNSLLHFYVTVKDIF 62
           PS ++    ++  L+ C       +  ++HAH+I    L + +F+   L+  Y     + 
Sbjct: 108 PSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLV 167

Query: 63  SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKP---NANTLVSVLSACS 119
            A ++F+ +    + +W  +I      G    +++++  + V     +A T   +L AC 
Sbjct: 168 DAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACG 227

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWT 178
            L   + G  +H  +++    + + + N+I+  Y +C  L     LF +MP K +VVSW 
Sbjct: 228 LLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWN 287

Query: 179 TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-S 237
           +MI  Y+  G   EA+ +F EM+K   A PN  T V  L AC   S +  G ++H+ +  
Sbjct: 288 SMISAYSSNGQSIEALRLFGEMQKASLA-PNTYTFVAALQACEDSSFIKQGMFIHATVLK 346

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
           + Y ++V   V NA+I MY + G +G A  +F  +   D ISW++++SG   NG   +AL
Sbjct: 347 SSYYINV--FVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEAL 404

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
           Q +  M      PD V  I++I+A +  G    G+ +  A +    +   +Q    +VDM
Sbjct: 405 QFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQI-HAYAMKNGLDSDLQVGNSLVDM 463

Query: 358 YGRAGLLEEAEAFIREMP 375
           Y +   ++  +    +MP
Sbjct: 464 YAKFCSMKYMDCIFDKMP 481



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 134/287 (46%), Gaps = 22/287 (7%)

Query: 113 SVLSACSSLVSHKLGKAIHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK 171
           SVL  C S  +   G+ +HAH +  N   N++ L   ++  Y +CG L     LF  MP 
Sbjct: 119 SVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPH 178

Query: 172 RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKY 231
           + + +W  MIG Y   G    ++ +++EM +      +  T   +L AC  +     G  
Sbjct: 179 KTIFTWNAMIGAYVTNGEPLGSLELYREM-RVSGIPLDACTFPCILKACGLLKDRRCGAE 237

Query: 232 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DKISWSTVISGLAMN 290
           VH        +S+   V N+++ MY KC D+  A Q+F+ +  K D +SW+++IS  + N
Sbjct: 238 VHGLAIKEGYVSIV-FVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSN 296

Query: 291 GCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQH 350
           G   +AL+LF  M   ++ P+  TF+A + AC     + QG+        ++  V +  +
Sbjct: 297 GQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMF-------IHATVLKSSY 349

Query: 351 YACV------VDMYGRAGLLEEAEAFIREMPIEAEWSV--WGALLNA 389
           Y  V      + MY R G + EA      M    +W    W ++L+ 
Sbjct: 350 YINVFVANALIAMYARFGKMGEAANIFYNMD---DWDTISWNSMLSG 393



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 3/96 (3%)

Query: 27  QKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGL 86
           +K  EIH  +I  G + +  + ++L+  Y     +  +  +FN +   D+V WT++I+  
Sbjct: 637 KKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAY 696

Query: 87  SKCGFHKEAIDMFCGID---VKPNANTLVSVLSACS 119
              G  + AID+F  ++   + P+    V+VL ACS
Sbjct: 697 GMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACS 732


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 143/454 (31%), Positives = 262/454 (57%), Gaps = 5/454 (1%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +T + ALKAC+     +   ++H+ +++     D F+   L+  Y     +  A  +F+ 
Sbjct: 290 FTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDL 349

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLG 127
           +   DV+ W +IISG S CG+  EA+ +F  +    ++ N  TL ++L + +   ++   
Sbjct: 350 MPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFC 409

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           + +H  S+++  + +  + N++LD Y +C  L     +F   P  ++V++T+MI  Y++ 
Sbjct: 410 EQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQY 469

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G  +EA+ ++  M+  ++ +P+     ++ +AC+++SA   GK +H ++  +  L     
Sbjct: 470 GLGEEALKMYLRMQD-RDIKPDAFIFSSLFNACANLSAYEQGKQIHVHV-LKCGLLSDVF 527

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
            GN+++NMY KCG +  A  +FN ++++  +SWS +I GLA +G GR+ALQLF  M+ N 
Sbjct: 528 AGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNG 587

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           + P+ +T ++++SAC+H GLV +    F  M  ++ I P  +HYAC+VD+ GR G L+EA
Sbjct: 588 ILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEA 647

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
              ++EMP +A  +VWGALL A RIH+N E+     + L+  +    GT  L++N +A  
Sbjct: 648 MVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHILLANIYAST 707

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
             W++  K+R  ++   +KK+ G SWIE+   ++
Sbjct: 708 GMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVY 741



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 202/405 (49%), Gaps = 25/405 (6%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+S   S N ++ +  L AC+        +++H ++I+ G+  D F  N+LL  Y     
Sbjct: 179 MISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGC 238

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKE---AIDMFCGID---VKPNANTLVSV 114
             +A  +F  +  PD+VSW  +I+G   C  H++   A+ +   +    V P+  TL S 
Sbjct: 239 PEAAIAVFYEIPKPDIVSWNAVIAG---CVLHEKNDLALKLLGKMGSYRVAPSMFTLSSA 295

Query: 115 LSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV 174
           L AC+++   KLG+ +H+  ++   E +  +   ++D Y +CG L     +F  MP ++V
Sbjct: 296 LKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDV 355

Query: 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
           + W ++I GY+  G+  EA+S+F  M K +  E N+ TL  +L + +   A  F + VH+
Sbjct: 356 IVWNSIISGYSNCGYDIEAMSLFTNMYK-EGLEFNQTTLSTILKSTAGSQANGFCEQVHT 414

Query: 235 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
            IS +        V N++++ Y KC  +  A +VF +   +D ++++++I+  +  G G 
Sbjct: 415 -ISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGE 473

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG------LILFKAMSTVYEIVPQM 348
           +AL+++  M    + PD   F +L +AC++    +QG      ++    +S V+      
Sbjct: 474 EALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFA----- 528

Query: 349 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
                +V+MY + G +++A     E+      S W A++     H
Sbjct: 529 --GNSLVNMYAKCGSIDDASCIFNEISWRGIVS-WSAMIGGLAQH 570



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 107/429 (24%), Positives = 195/429 (45%), Gaps = 86/429 (20%)

Query: 74  PDVVSWTTIISGLSKCGFHKEAI----DMF-----------------CGID--------- 103
           PD+VSW+ +ISG  + G  +EA+    +M+                 C +          
Sbjct: 111 PDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQI 170

Query: 104 -------------VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAIL 150
                        + PN  +L +VL+AC+ L     G  +H + ++   +++    NA+L
Sbjct: 171 HRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALL 230

Query: 151 DFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNE 210
           D Y + G   +   +F ++PK ++VSW  +I G         A+ +  +M   + A P+ 
Sbjct: 231 DMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVA-PSM 289

Query: 211 ATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN 270
            TL + L AC++I  +  G+ +HS +  + D+   + VG  +I+MY KCG +  A  VF+
Sbjct: 290 FTLSSALKACAAIGLVKLGRQLHSAL-MKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFD 348

Query: 271 MLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV---------------------F 309
           ++  KD I W+++ISG +  G   +A+ LF+ M    +                     F
Sbjct: 349 LMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGF 408

Query: 310 PDDVTFIALISACSHGGLVDQGLI-------LFKAMSTVYEIVP--QMQHYACVVDMYGR 360
            + V  I++ S   + G V   L+       L +  + V+E+ P   +  Y  ++  Y +
Sbjct: 409 CEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQ 468

Query: 361 AGLLEEA-EAFIR--EMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTF 417
            GL EEA + ++R  +  I+ +  ++ +L NAC    N   +++ +Q  V+     V   
Sbjct: 469 YGLGEEALKMYLRMQDRDIKPDAFIFSSLFNAC---ANLSAYEQGKQIHVH-----VLKC 520

Query: 418 ALMSNTFAG 426
            L+S+ FAG
Sbjct: 521 GLLSDVFAG 529



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 133/303 (43%), Gaps = 47/303 (15%)

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           G AIHA   R +    + L N +++ Y +C        L +   + ++VSW+ +I GY +
Sbjct: 69  GMAIHA---RIIRLGLLGLRNRLVNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQ 125

Query: 187 RGFCKEAVSVFQEM-------------------EKTKEAE-------------------- 207
            G  +EA+  + EM                     T+  E                    
Sbjct: 126 NGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGIS 185

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
           PNE +L  VL+AC+ +   ++G  VH Y I   YD        NA+++MY K G    AI
Sbjct: 186 PNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYD--SDPFSANALLDMYAKSGCPEAAI 243

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
            VF  +   D +SW+ VI+G  ++     AL+L   M    V P   T  + + AC+  G
Sbjct: 244 AVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIG 303

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 386
           LV  G  L  A+  + ++ P       ++DMY + GLL++A      MP + +  VW ++
Sbjct: 304 LVKLGRQLHSALMKM-DMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXK-DVIVWNSI 361

Query: 387 LNA 389
           ++ 
Sbjct: 362 ISG 364



 Score = 45.8 bits (107), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 78/185 (42%), Gaps = 40/185 (21%)

Query: 253 INMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD 312
           +N+Y KC    +A ++    +  D +SWS +ISG   NG G +AL  +  M +     ++
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 313 VTFIALISACSHGGLVDQGLILFK-----------------AMSTVYEIVPQM--QHYA- 352
            TF +++  CS    ++ G  + +                 ++STV      +  ++Y  
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGM 208

Query: 353 -------------------CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
                               ++DMY ++G  E A A   E+P + +   W A++  C +H
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIP-KPDIVSWNAVIAGCVLH 267

Query: 394 RNDEM 398
             +++
Sbjct: 268 EKNDL 272


>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 516

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 160/481 (33%), Positives = 271/481 (56%), Gaps = 42/481 (8%)

Query: 14  TQAL-KACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ--IFNS 70
           TQAL + CS     ++ ++IH  +++ G + +    ++LL  Y  ++ +  A+   +F+S
Sbjct: 13  TQALLERCS---NMKELMQIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDS 69

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLG 127
           +  P+ V W T++   S     + A+ ++  +    V  N+ T   +L ACS+L + +  
Sbjct: 70  ISSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEET 129

Query: 128 KAIHAHSLR-------------------------------NLNENNIILDNAILDFYIRC 156
           + IHAH ++                                L   +I+  N ++D YI+ 
Sbjct: 130 QQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKF 189

Query: 157 GSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNV 216
           G+L     +F  MP++NV+SWTTMI G+   G  KEA+S+ Q+M      +P+  TL   
Sbjct: 190 GNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQM-LVAGIKPDSITLSCS 248

Query: 217 LSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD 276
           LSAC+ + AL  GK++H+YI  + ++ +  ++G  + +MYVKCG++  A+ VF+ L  K 
Sbjct: 249 LSACAGLGALEQGKWIHTYIE-KNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEKKC 307

Query: 277 KISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFK 336
             +W+ +I GLA++G GR+AL  F+ M    + P+ +TF A+++ACSH GL ++G  LF+
Sbjct: 308 VCAWTAIIGGLAIHGKGREALDWFTQMQKAGINPNSITFTAILTACSHAGLTEEGKSLFE 367

Query: 337 AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND 396
           +MS+VY I P M+HY C+VD+ GRAGLL+EA  FI  MP++   ++WGALLNAC++H++ 
Sbjct: 368 SMSSVYNIKPSMEHYGCMVDLMGRAGLLKEAREFIESMPVKPNAAIWGALLNACQLHKHF 427

Query: 397 EMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           E+   I + L+       G +  +++ +A A  W    ++R +I+  GL    GCS I +
Sbjct: 428 ELGKEIGKILIELDPDHSGRYIHLASIYAAAGEWNQVVRVRSQIKHRGLLNHPGCSSITL 487

Query: 457 N 457
           N
Sbjct: 488 N 488



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 154/326 (47%), Gaps = 39/326 (11%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML     +N YTF   LKACS     ++  +IHAH+I+ G   +++  NSLL  Y    +
Sbjct: 101 MLHNSVPHNSYTFPFLLKACSALSAFEETQQIHAHIIKRGFGLEVYATNSLLRVYAISGN 160

Query: 61  IFSAHQIFNSVVFPD-------------------------------VVSWTTIISGLSKC 89
           I SAH +FN +   D                               V+SWTT+I G  + 
Sbjct: 161 IQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRI 220

Query: 90  GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
           G HKEA+ +   +    +KP++ TL   LSAC+ L + + GK IH +  +N  + + +L 
Sbjct: 221 GMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGLGALEQGKWIHTYIEKNEIKIDPVLG 280

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
             + D Y++CG +     +F K+ K+ V +WT +IGG A  G  +EA+  F +M+K    
Sbjct: 281 CVLTDMYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKGREALDWFTQMQKAG-I 339

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
            PN  T   +L+ACS       GK +   +S+ Y++  S      ++++  + G +  A 
Sbjct: 340 NPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNIKPSMEHYGCMVDLMGRAGLLKEAR 399

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGC 292
           +    +  K     +  I G  +N C
Sbjct: 400 EFIESMPVKP----NAAIWGALLNAC 421



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 152/349 (43%), Gaps = 53/349 (15%)

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCG--SLAS 161
           + PN     ++L  CS++   K    IH   L+     N +  + +L  Y R    +LA 
Sbjct: 6   LPPNTEQTQALLERCSNM---KELMQIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAY 62

Query: 162 CGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221
              +F  +   N V W TM+  Y+     + A+ ++ +M        N  T   +L ACS
Sbjct: 63  TRVVFDSISSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPH-NSYTFPFLLKACS 121

Query: 222 SISALSFGKYVHSYISTR-----------------------------YDLSVSNLVG-NA 251
           ++SA    + +H++I  R                               L   ++V  N 
Sbjct: 122 ALSAFEETQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNI 181

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD 311
           +I+ Y+K G++ +A ++F  +  K+ ISW+T+I G    G  ++AL L   M++  + PD
Sbjct: 182 MIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPD 241

Query: 312 DVTFIALISACSHGGLVDQGLILFKAMSTVYE-----IVPQMQHYACVV-DMYGRAGLLE 365
            +T    +SAC+  G ++QG    K + T  E     I P +    CV+ DMY + G +E
Sbjct: 242 SITLSCSLSACAGLGALEQG----KWIHTYIEKNEIKIDPVL---GCVLTDMYVKCGEME 294

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDRIRQDLVNKKGVS 413
           +A     ++  +     W A++    IH +  E  D   Q  + K G++
Sbjct: 295 KALLVFSKLEKKCV-CAWTAIIGGLAIHGKGREALDWFTQ--MQKAGIN 340


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 157/437 (35%), Positives = 256/437 (58%), Gaps = 10/437 (2%)

Query: 29  ALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
            ++IHA+ ++ G   D+ + NSL+  Y     +     IF+ +   DVVSWTTII+G ++
Sbjct: 402 GMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQ 461

Query: 89  CGFHKEAIDMFC-----GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNI 143
            G H  A+++F      GID+  +   + S+L ACS L      K IH++ +R    +++
Sbjct: 462 NGSHSRALELFREVQLEGIDL--DVMMISSILLACSGLKLISSVKEIHSYIIRK-GLSDL 518

Query: 144 ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
           +L N I+D Y  CG++     +F  +  ++VVSWT+MI  Y   G   EA+ +F  M++T
Sbjct: 519 VLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKET 578

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
              EP+  +LV++LSA +S+SAL  GK +H ++  R    +   + + +++MY +CG + 
Sbjct: 579 G-VEPDSISLVSILSAAASLSALKKGKEIHGFL-IRKGFVLEGSLASTLVDMYARCGTLE 636

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
            +  VFN +  KD + W+++I+   M+GCGR A+ LF  M   ++ PD + F+A++ ACS
Sbjct: 637 KSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACS 696

Query: 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 383
           H GL+++G    ++M   Y++ P  +HYAC+VD+ GRA  LEEA  F++ M +E    VW
Sbjct: 697 HSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVW 756

Query: 384 GALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443
            ALL AC+IH N E+ +   Q L+     + G + L+SN ++   RW+D   +R  ++  
Sbjct: 757 CALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKAS 816

Query: 444 GLKKKTGCSWIEVNPSI 460
           GLKK  GCSWIEV   +
Sbjct: 817 GLKKNPGCSWIEVGNKV 833



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/403 (28%), Positives = 226/403 (56%), Gaps = 38/403 (9%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YTF  AL+AC  +   ++ + IHA V++  +  ++F+ N+L+  Y     +  A  IF
Sbjct: 281 NTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIF 340

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
            ++   D +SW +++SG  + G + EA+  +  +     KP+   ++S+++A +   +  
Sbjct: 341 YNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTL 400

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G  IHA++++N  ++++ + N+++D Y +  S+     +F KMP ++VVSWTT+I G+A
Sbjct: 401 HGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHA 460

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G    A+ +F+E++  +  + +   + ++L ACS +  +S  K +HSYI  +    +S
Sbjct: 461 QNGSHSRALELFREVQ-LEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRK---GLS 516

Query: 246 NLV-GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           +LV  N ++++Y +CG+V  A ++F ++ +KD +SW+++IS    NG   +AL+LF LM 
Sbjct: 517 DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMK 576

Query: 305 INAVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
              V PD ++ ++++SA +           HG L+ +G +L  ++++             
Sbjct: 577 ETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLAST------------ 624

Query: 354 VVDMYGRAGLLEEAE---AFIREMPIEAEWSVWGALLNACRIH 393
           +VDMY R G LE++     FIR      +  +W +++NA  +H
Sbjct: 625 LVDMYARCGTLEKSRNVFNFIR----NKDLVLWTSMINAYGMH 663



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 114/417 (27%), Positives = 209/417 (50%), Gaps = 25/417 (5%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           TF   LKAC L    +   E+H   I+ G++  +F+ NS++  Y    D+  A Q+F+ +
Sbjct: 182 TFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRM 241

Query: 72  VFP-DVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLG 127
               DVVSW ++IS  S  G   EA+ +F  +    + PN  T V+ L AC      K G
Sbjct: 242 PEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQG 301

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
             IHA  L++    N+ + NA++  Y R G +     +F  M   + +SW +M+ G+ + 
Sbjct: 302 MFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQN 361

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G   EA+  + EM    + +P+   ++++++A +       G  +H+Y + +  L     
Sbjct: 362 GLYHEALQFYHEMRDAGQ-KPDLVAVISIIAASARSGNTLHGMQIHAY-AMKNGLDSDLQ 419

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           VGN++++MY K   +     +F+ +  KD +SW+T+I+G A NG   +AL+LF  + +  
Sbjct: 420 VGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEG 479

Query: 308 VFPDDVTFIALISACSHGGLVD-----QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
           +  D +   +++ ACS   L+         I+ K +S   ++V Q      +VD+YG  G
Sbjct: 480 IDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS---DLVLQ----NGIVDVYGECG 532

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACRIHR---ND--EMFDRIRQDLVNKKGVSV 414
            ++ A A + E+    +   W +++ +C +H    N+  E+F  +++  V    +S+
Sbjct: 533 NVDYA-ARMFELIEFKDVVSWTSMI-SCYVHNGLANEALELFHLMKETGVEPDSISL 587



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/378 (26%), Positives = 182/378 (48%), Gaps = 11/378 (2%)

Query: 5   PSSYN-HYTFTQALKACSLAHPHQKALEIHAHVIEYGHL-HDIFIQNSLLHFYVTVKDIF 62
           PS ++    ++  L+ C       +  ++HAH+I    L + +F+   L+  Y     + 
Sbjct: 72  PSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLV 131

Query: 63  SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKP---NANTLVSVLSACS 119
            A ++F+ +    + +W  +I      G    +++++  + V     +A T   +L AC 
Sbjct: 132 DAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACG 191

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWT 178
            L   + G  +H  +++    + + + N+I+  Y +C  L     LF +MP K +VVSW 
Sbjct: 192 LLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWN 251

Query: 179 TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-S 237
           +MI  Y+  G   EA+ +F EM+K   A PN  T V  L AC   S +  G ++H+ +  
Sbjct: 252 SMISAYSSNGQSIEALRLFGEMQKASLA-PNTYTFVAALQACEDSSFIKQGMFIHATVLK 310

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
           + Y ++V   V NA+I MY + G +G A  +F  +   D ISW++++SG   NG   +AL
Sbjct: 311 SSYYINV--FVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEAL 368

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
           Q +  M      PD V  I++I+A +  G    G+ +  A +    +   +Q    +VDM
Sbjct: 369 QFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQI-HAYAMKNGLDSDLQVGNSLVDM 427

Query: 358 YGRAGLLEEAEAFIREMP 375
           Y +   ++  +    +MP
Sbjct: 428 YAKFCSMKYMDCIFDKMP 445



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 135/287 (47%), Gaps = 22/287 (7%)

Query: 113 SVLSACSSLVSHKLGKAIHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK 171
           SVL  C S  +   G+ +HAH +  N   N++ L   ++  Y +CG L     LF  MP 
Sbjct: 83  SVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPH 142

Query: 172 RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKY 231
           + + +W  MIG Y   G    ++ +++EM +      +  T   +L AC  +    +G  
Sbjct: 143 KTIFTWNAMIGAYVTNGEPLGSLELYREM-RVSGIPLDACTFPCILKACGLLKDRRYGAE 201

Query: 232 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DKISWSTVISGLAMN 290
           VH        +S+   V N+++ MY KC D+  A Q+F+ +  K D +SW+++IS  + N
Sbjct: 202 VHGLAIKEGYVSIV-FVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSN 260

Query: 291 GCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQH 350
           G   +AL+LF  M   ++ P+  TF+A + AC     + QG+        ++  V +  +
Sbjct: 261 GQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMF-------IHATVLKSSY 313

Query: 351 YACV------VDMYGRAGLLEEAEAFIREMPIEAEWSV--WGALLNA 389
           Y  V      + MY R G + EA      M    +W    W ++L+ 
Sbjct: 314 YINVFVANALIAMYARFGKMGEAANIFYNMD---DWDTISWNSMLSG 357



 Score = 46.6 bits (109), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 3/96 (3%)

Query: 27  QKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGL 86
           +K  EIH  +I  G + +  + ++L+  Y     +  +  +FN +   D+V WT++I+  
Sbjct: 601 KKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAY 660

Query: 87  SKCGFHKEAIDMFCGID---VKPNANTLVSVLSACS 119
              G  + AID+F  ++   + P+    V+VL ACS
Sbjct: 661 GMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACS 696


>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
 gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
 gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 600

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 158/464 (34%), Positives = 265/464 (57%), Gaps = 27/464 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFY-----VTVKDIFS 63
           +++T+   LKACS          +H H+ + G   DI++ N+L+  Y     + V+D   
Sbjct: 116 DNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRD--- 172

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNA-----NTLVSVLSAC 118
           A ++F  +   D VSW +++ GL K G  ++A  +F   D  P       NT++   + C
Sbjct: 173 AMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLF---DEMPQRDLISWNTMLDGYARC 229

Query: 119 SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP--KRNVVS 176
                 ++ KA        + E N +  + ++  Y + G +     +F KMP   +NVV+
Sbjct: 230 -----REMSKAFEL--FEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVT 282

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           WT +I GYAE+G  KEA  +  +M  +   + + A ++++L+AC+    LS G  +HS I
Sbjct: 283 WTIIIAGYAEKGLLKEADRLVDQMVASG-LKFDAAAVISILAACTESGLLSLGMRIHS-I 340

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
             R +L  +  V NA+++MY KCG++  A  VFN +  KD +SW+T++ GL ++G G++A
Sbjct: 341 LKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEA 400

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
           ++LFS M    + PD VTFIA++ +C+H GL+D+G+  F +M  VY++VPQ++HY C+VD
Sbjct: 401 IELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVD 460

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGT 416
           + GR G L+EA   ++ MP+E    +WGALL ACR+H   ++   +  +LV       G 
Sbjct: 461 LLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGN 520

Query: 417 FALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           ++L+SN +A A+ WE    IR +++ MG++K +G S +E+   I
Sbjct: 521 YSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGI 564



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 188/400 (47%), Gaps = 35/400 (8%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           ++HA +I      D+ I   L+      +    A ++FN V  P+V    ++I   ++  
Sbjct: 37  QLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQNS 96

Query: 91  FHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
              +A  +F  +    +  +  T   +L ACS      + K +H H  +    ++I + N
Sbjct: 97  QPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPN 156

Query: 148 AILDFYIRCGSLA--SCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
           A++D Y RCG L       LF KM +R+ VSW +M+GG  + G  ++A  +F EM +   
Sbjct: 157 ALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDL 216

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
              N  T+++  + C  +S  +F  +    +  R  +S S +V       Y K GD+ +A
Sbjct: 217 ISWN--TMLDGYARCREMSK-AFELF--EKMPERNTVSWSTMVMG-----YSKAGDMEMA 266

Query: 266 IQVFNM--LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
             +F+   L  K+ ++W+ +I+G A  G  ++A +L   M+ + +  D    I++++AC+
Sbjct: 267 RVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACT 326

Query: 324 HGGLVDQGLILFKAM------STVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIE 377
             GL+  G+ +   +      S  Y +         ++DMY + G L++A     ++P +
Sbjct: 327 ESGLLSLGMRIHSILKRSNLGSNAYVL-------NALLDMYAKCGNLKKAFDVFNDIP-K 378

Query: 378 AEWSVWGALLNACRIHRND----EMFDRIRQDLVNKKGVS 413
            +   W  +L+   +H +     E+F R+R++ +    V+
Sbjct: 379 KDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVT 418



 Score = 38.1 bits (87), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 89/209 (42%), Gaps = 33/209 (15%)

Query: 217 LSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD 276
           L  C++++ +   K +H+ I  R +L     +   +I+    C    +A++VFN +   +
Sbjct: 26  LPKCANLNQV---KQLHAQI-IRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPN 81

Query: 277 KISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS-----------HG 325
               +++I   A N    QA  +FS M    +F D+ T+  L+ ACS           H 
Sbjct: 82  VHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHN 141

Query: 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL--EEAEAFIREMPIE--AEW- 380
            +   GL      S +Y  VP       ++D Y R G L   +A     +M       W 
Sbjct: 142 HIEKLGL-----SSDIY--VPN-----ALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWN 189

Query: 381 SVWGALLNACRIHRNDEMFDRIRQ-DLVN 408
           S+ G L+ A  +     +FD + Q DL++
Sbjct: 190 SMLGGLVKAGELRDARRLFDEMPQRDLIS 218


>gi|115466810|ref|NP_001057004.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|55773755|dbj|BAD72438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595044|dbj|BAF18918.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|125596287|gb|EAZ36067.1| hypothetical protein OsJ_20377 [Oryza sativa Japonica Group]
          Length = 673

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 147/447 (32%), Positives = 252/447 (56%), Gaps = 5/447 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YT    L AC++     +   IH  VI+YG   + FI  SLL  Y   + +  A ++F
Sbjct: 222 SEYTMVSVLAACAMLGGLHQGRWIHGSVIKYGLSTNSFISASLLDMYAKCEKVEDARRVF 281

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLVSHK 125
           + + F D+V WT +I G ++     +A+ +F     + + PN+ T+ +V+SA + L    
Sbjct: 282 DELEFVDIVLWTAMIVGYTQNKRPLDALQLFLHKKFVSIVPNSVTIATVISASAQLRHLP 341

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG+++HA  ++     + ++ NA++D Y +C +L     +F ++  ++VV+W +M+ GY+
Sbjct: 342 LGRSVHAIGVKLGTMESDVVRNALVDMYAKCQALPEANSIFGRILIKDVVAWNSMMAGYS 401

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           E G   E++ +F  M + +   P+  ++VN LSAC  ++ L  GK  H+Y + +Y    +
Sbjct: 402 ENGMANESLVLFNRM-RMQGISPDAISVVNALSACVCLADLHIGKGFHTY-AIKYAFMSN 459

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V  A++N+Y KC D+  A +VFN +  ++ ++WS +I G  M G    ++ LF+ M+ 
Sbjct: 460 IYVNTALLNLYSKCADLPSAQRVFNDMTDRNSVTWSAMIGGYGMQGDSAGSIDLFNEMLK 519

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             + P++V F +++SACSH G+V  G   F +M+  + I P M+HYAC+VD+  RAG LE
Sbjct: 520 ENIHPNEVVFTSILSACSHTGMVTAGKEYFDSMARHFNITPSMKHYACMVDVMARAGNLE 579

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EA  FI+ MPI+A  SVWG+ L+ C++H   E  +   + +      +   + LMSN + 
Sbjct: 580 EALEFIQNMPIKAGISVWGSFLHGCKLHSRLEFGEEAIKKMAALHPETPDFYVLMSNLYT 639

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCS 452
              RW+ +  IR  ++  GL K  GCS
Sbjct: 640 SYGRWDKSQTIRRWMQEQGLVKLPGCS 666



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 174/323 (53%), Gaps = 7/323 (2%)

Query: 4   CPSSYN-HYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIF 62
           CP++       + ALKAC  +   +    +H  V++ G   D F+ NSL+  Y    D+ 
Sbjct: 116 CPAAAQADVVLSLALKACVRSADFRYGRRLHCDVVKAGGA-DGFVMNSLVDMYAKAGDLE 174

Query: 63  SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 119
           +A ++F+ V   +VVSWT+++SG  + G  +E + +F  +   +V P+  T+VSVL+AC+
Sbjct: 175 NARKVFDRVPERNVVSWTSMLSGSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAACA 234

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
            L     G+ IH   ++     N  +  ++LD Y +C  +     +F ++   ++V WT 
Sbjct: 235 MLGGLHQGRWIHGSVIKYGLSTNSFISASLLDMYAKCEKVEDARRVFDELEFVDIVLWTA 294

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           MI GY +     +A+ +F   +K     PN  T+  V+SA + +  L  G+ VH+ I  +
Sbjct: 295 MIVGYTQNKRPLDALQLFLH-KKFVSIVPNSVTIATVISASAQLRHLPLGRSVHA-IGVK 352

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
                S++V NA+++MY KC  +  A  +F  +  KD ++W+++++G + NG   ++L L
Sbjct: 353 LGTMESDVVRNALVDMYAKCQALPEANSIFGRILIKDVVAWNSMMAGYSENGMANESLVL 412

Query: 300 FSLMIINAVFPDDVTFIALISAC 322
           F+ M +  + PD ++ +  +SAC
Sbjct: 413 FNRMRMQGISPDAISVVNALSAC 435



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 191/382 (50%), Gaps = 20/382 (5%)

Query: 45  IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAI----DMFC 100
           I  +  LL  Y  + D+ SA  + +    PD  ++  ++  L   G H +A+    DM  
Sbjct: 55  IRARTKLLSCYAALGDLASARGVLDGTPRPDAYAYRVMLGWLVDAGSHADAVALHRDMRR 114

Query: 101 GIDVKPNANTLVSV-LSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSL 159
                  A+ ++S+ L AC      + G+ +H   ++    +  ++ N+++D Y + G L
Sbjct: 115 RCPAAAQADVVLSLALKACVRSADFRYGRRLHCDVVKAGGADGFVM-NSLVDMYAKAGDL 173

Query: 160 ASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
            +   +F ++P+RNVVSWT+M+ G  + G  +E + +F EM +     P+E T+V+VL+A
Sbjct: 174 ENARKVFDRVPERNVVSWTSMLSGSIQNGIAEEGLVLFNEM-RQDNVHPSEYTMVSVLAA 232

Query: 220 CSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS 279
           C+ +  L  G+++H  +  +Y LS ++ +  ++++MY KC  V  A +VF+ L + D + 
Sbjct: 233 CAMLGGLHQGRWIHGSV-IKYGLSTNSFISASLLDMYAKCEKVEDARRVFDELEFVDIVL 291

Query: 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMS 339
           W+ +I G   N     ALQLF      ++ P+ VT   +ISA +      + L L +++ 
Sbjct: 292 WTAMIVGYTQNKRPLDALQLFLHKKFVSIVPNSVTIATVISASAQ----LRHLPLGRSVH 347

Query: 340 TVYEIVPQMQH---YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACR----I 392
            +   +  M+       +VDMY +   L EA +    + I+ +   W +++         
Sbjct: 348 AIGVKLGTMESDVVRNALVDMYAKCQALPEANSIFGRILIK-DVVAWNSMMAGYSENGMA 406

Query: 393 HRNDEMFDRIRQDLVNKKGVSV 414
           + +  +F+R+R   ++   +SV
Sbjct: 407 NESLVLFNRMRMQGISPDAISV 428



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 149/311 (47%), Gaps = 13/311 (4%)

Query: 107 NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN--IILDNAILDFYIRCGSLASCGY 164
           +A+ LV +L AC +L S +   A+H   L   +     I     +L  Y   G LAS   
Sbjct: 20  DASALVLLLPACGTLRSLR---ALHGRLLLLTSGLLRGIRARTKLLSCYAALGDLASARG 76

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT-KEAEPNEATLVNVLSACSSI 223
           +    P+ +  ++  M+G   + G   +AV++ ++M +    A   +  L   L AC   
Sbjct: 77  VLDGTPRPDAYAYRVMLGWLVDAGSHADAVALHRDMRRRCPAAAQADVVLSLALKACVRS 136

Query: 224 SALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTV 283
           +   +G+ +H  +           V N++++MY K GD+  A +VF+ +  ++ +SW+++
Sbjct: 137 ADFRYGRRLHCDVVKAG--GADGFVMNSLVDMYAKAGDLENARKVFDRVPERNVVSWTSM 194

Query: 284 ISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 343
           +SG   NG   + L LF+ M  + V P + T +++++AC+  G + QG  +  ++   Y 
Sbjct: 195 LSGSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAACAMLGGLHQGRWIHGSV-IKYG 253

Query: 344 IVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIR 403
           +       A ++DMY +   +E+A     E+    +  +W A++      +N    D + 
Sbjct: 254 LSTNSFISASLLDMYAKCEKVEDARRVFDELEF-VDIVLWTAMI--VGYTQNKRPLDAL- 309

Query: 404 QDLVNKKGVSV 414
           Q  ++KK VS+
Sbjct: 310 QLFLHKKFVSI 320


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 149/442 (33%), Positives = 254/442 (57%), Gaps = 5/442 (1%)

Query: 19  ACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVS 78
           AC+      KA  I  ++       D+ +  +++  Y     + SA +IF+ +   +V+S
Sbjct: 140 ACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVIS 199

Query: 79  WTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSL 135
           W+ +I+     G  ++A+D+F       + P+  TL S+L ACS L + ++G+ IH    
Sbjct: 200 WSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVY 259

Query: 136 RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVS 195
           +   + +  +  A++D Y +C  +    +LF KMP+R++V+WT MIGGYAE G   E++ 
Sbjct: 260 KFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLV 319

Query: 196 VFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINM 255
           +F +M + +   P++  +V V+ AC+ + A+   + +  YI  R    +  ++G A+I+M
Sbjct: 320 LFDKM-REEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQ-RKKFQLDVILGTAMIDM 377

Query: 256 YVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTF 315
           + KCG V  A ++F+ +  K+ ISWS +I+    +G GR+AL LF +M+ + + P+ +T 
Sbjct: 378 HAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITL 437

Query: 316 IALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP 375
           ++L+ ACSH GLV++GL  F  M   Y +   ++HY CVVD+ GRAG L+EA   I  M 
Sbjct: 438 VSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMT 497

Query: 376 IEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNK 435
           +E +  +WGA L ACR H++  + ++    L+  +  + G + L+SN +A A RWED  K
Sbjct: 498 VEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAK 557

Query: 436 IRDEIRRMGLKKKTGCSWIEVN 457
            RD + +  LKK  G +WIEV+
Sbjct: 558 TRDLMSQRRLKKIPGWTWIEVD 579



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 107/402 (26%), Positives = 205/402 (50%), Gaps = 19/402 (4%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ++ C +  ++YT    ++AC      Q    IH  V ++G   D F+  +L+  YV  ++
Sbjct: 21  LIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCRE 80

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           I  A  +F+ +   D+V+WT +I G ++CG   E++ +F  +    V P+   +V+V+ A
Sbjct: 81  IEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFA 140

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C+ L +    + I  +  R   + ++IL  A++D Y +CG + S   +F +M ++NV+SW
Sbjct: 141 CAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISW 200

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
           + MI  Y   G  ++A+ +F+ M  +    P++ TL ++L ACS +  L  G+ +H +I 
Sbjct: 201 SAMIAAYGYHGQGRKALDLFRMMLSSGML-PDKITLASLLYACSDLKNLQMGRLIH-HIV 258

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            ++ L + + V  A+++MY KC ++  A  +F+ +  +D ++W+ +I G A  G   ++L
Sbjct: 259 YKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESL 318

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY------ 351
            LF  M    V PD V  + ++ AC+  G + +         T+ + + + +        
Sbjct: 319 VLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKA-------RTIDDYIQRKKFQLDVILG 371

Query: 352 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
             ++DM+ + G +E A      M  E     W A++ A   H
Sbjct: 372 TAMIDMHAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYH 412


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 160/467 (34%), Positives = 255/467 (54%), Gaps = 41/467 (8%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           + HA ++ +G   + F+   ++  Y +  D+ SA  +F+ +  P  + + +II   ++ G
Sbjct: 98  QAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHG 157

Query: 91  FHK------EAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
                    EA      + +  +  TL  VL +C+ L    +G+ +H   LR   E +  
Sbjct: 158 XXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFY 217

Query: 145 LDNAILDFYIRCGSLASC--------------------GY-----------LFVKMPKRN 173
           +  +++D Y++CG +                       GY           LF +M  RN
Sbjct: 218 VGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRN 277

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALSFGKYV 232
           +VSWT MI GY + GF ++A+ +F EM +   E +PN  T+V+VL AC+  +AL  G+ +
Sbjct: 278 IVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRI 337

Query: 233 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK--ISWSTVISGLAMN 290
           H + +    L +++ V  A+  MY KC  +  A   F+M+A   K  I+W+T+I+  A +
Sbjct: 338 HDF-ANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASH 396

Query: 291 GCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQH 350
           GCG +A+ +F  M+   V PD VTF+ L+S CSH GL+D GL  F  M T++ + P+++H
Sbjct: 397 GCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEH 456

Query: 351 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKK 410
           YACVVD+ GRAG L EA+  I +MP++A  SVWGALL ACR HRN E+ +   + L   +
Sbjct: 457 YACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLE 516

Query: 411 GVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
             + G + L+SN +A A  WE+  K+R  ++  G+KK  GCSWIE+N
Sbjct: 517 PDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEIN 563



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 98/216 (45%), Gaps = 7/216 (3%)

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           KLG+  HA  + +  + N  L   ++  Y   G L S   +F ++   + + + ++I  Y
Sbjct: 94  KLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAY 153

Query: 185 AERGFCKEAVSVFQEMEKTK--EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
              G         +   +        +  TL  VL +C+ +S +  G+ VH     R  L
Sbjct: 154 TRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQ-GLRVGL 212

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
                VG ++I+MYVKCG +G A ++F+ +  +D  SW+ +I+G    G    A  LF  
Sbjct: 213 EGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFER 272

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM 338
           M    +    V++ A+IS  +  G  +Q L LF  M
Sbjct: 273 MEHRNI----VSWTAMISGYTQNGFAEQALGLFDEM 304


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 150/458 (32%), Positives = 255/458 (55%), Gaps = 41/458 (8%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+   S  N YT+   LKACS +    + +++HAH++++G   D  I +S +  Y +   
Sbjct: 129 MVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGR 188

Query: 61  IFSAHQIFNSVVFP-DVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACS 119
           +  A +I +      D V W  +I G  + G  + A ++F G+  +   +T         
Sbjct: 189 LVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTW-------- 240

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
                                      NA++  + RCG +      F +M +R+ +SW+ 
Sbjct: 241 ---------------------------NAMISGFSRCGMVEVAREFFDEMKERDEISWSA 273

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           MI GY + G   EA+ +F +M+K K   P +  L +VLSAC+++ AL  G+++H+Y + R
Sbjct: 274 MIDGYIQEGCFMEALEIFHQMQKEK-IRPRKFVLPSVLSACANLGALDQGRWIHTY-AKR 331

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
             + +  ++G ++++MY KCG + +A +VF  ++ K+  SW+ +I GLAM+G    A+ L
Sbjct: 332 NSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDL 391

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
           FS M I   +P+++TF+ +++AC+HGGLV +GL +F +M   Y + PQ++HY C+VD+ G
Sbjct: 392 FSKMDI---YPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLG 448

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFAL 419
           RAGLL EAE  +  +P E   +VWGALL ACR H N E+ +R+ + L+  +  + G + L
Sbjct: 449 RAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTL 508

Query: 420 MSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +SN +A A RWE+  ++R  ++  G+K   G S I++ 
Sbjct: 509 LSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLG 546



 Score = 38.5 bits (88), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 70/164 (42%), Gaps = 8/164 (4%)

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285
           L  G    SYI+     S +N+  N  ++          +++VF+ +   +   W+ +I 
Sbjct: 59  LRTGHLQDSYIAGSLVKSYANVSTNRYLSFES-------SLRVFDFVRKPNVFLWNCMIK 111

Query: 286 GLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 345
               N    +A+ L+  M++    P+  T+ A++ ACS  G+V +G +   A    + + 
Sbjct: 112 VCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEG-VQVHAHLVKHGLG 170

Query: 346 PQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
                 +  + MY   G L EA   + +   E +   W A+++ 
Sbjct: 171 GDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDG 214


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 151/455 (33%), Positives = 254/455 (55%), Gaps = 5/455 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YTF+ ALKAC+ +       EIH   ++ G     F+ N+L   Y     +    ++F
Sbjct: 168 DTYTFSSALKACADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLF 227

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
            S+   DVVSWTTII    + G  + A+  F  +   DV PN  T  +V+S C++L   +
Sbjct: 228 ESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIE 287

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ +HAH +R    +++ + N+I+  Y +C  L     +F  + +R+++SW+TMI GYA
Sbjct: 288 WGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYA 347

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G  +EA      M + +   PNE    +VLS C +++ L  GK +H+++     L  +
Sbjct: 348 QGGCGEEAFDYLSWMRR-EGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLC-VGLEQN 405

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
            +V +A+INMY KCG +  A ++F+   Y + +SW+ +I+G A +G  ++A+ LF  +  
Sbjct: 406 TMVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPK 465

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             + PD VTFIA+++ACSH GLVD G   F ++S V++I P   HY C++D+  RAG L 
Sbjct: 466 VGLRPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRLN 525

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           +AE+ I+ MP + +  VW  LL ACRIH + +   R  + ++        T   ++N +A
Sbjct: 526 DAESMIQSMPFQRDDVVWSTLLRACRIHGDVDCGKRAAEKILQLDPNCAVTHITLANMYA 585

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
              +W++  ++R  ++  G+ K+ G SWI+    +
Sbjct: 586 AKGKWKEAAEVRKMMKSKGVVKEPGWSWIKFKDRV 620



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/389 (29%), Positives = 200/389 (51%), Gaps = 13/389 (3%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +  + ALKAC L         +H + ++   ++ +F+ ++L+  Y+ +  +     +F  
Sbjct: 69  FILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKE 128

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKP---NANTLVSVLSACSSLVSHKLG 127
           +   +VVSWT II+GL + G++KEA+  F  + ++    +  T  S L AC+   +   G
Sbjct: 129 MPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYG 188

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           + IH  +L+        + N +   Y +CG L     LF  M +R+VVSWTT+I    + 
Sbjct: 189 REIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQI 248

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G  + AV  F+ M +T +  PNE T   V+S C+++  + +G+ +H+++  R  L  S  
Sbjct: 249 GQEENAVKAFRRMRET-DVSPNEFTFAAVISGCATLGRIEWGEQLHAHV-IRRGLVDSLS 306

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V N+++ MY KC  + +A  VF  L+ +D ISWST+ISG A  GCG +A    S M    
Sbjct: 307 VANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREG 366

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
             P++  F +++S C +  +++QG  L   +  V      M   A +++MY + G ++EA
Sbjct: 367 PRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSA-LINMYSKCGSIKEA 425

Query: 368 EAFIREMPIEAEWS---VWGALLNACRIH 393
                    EAE++    W A++N    H
Sbjct: 426 SKIFD----EAEYNNIVSWTAMINGYAEH 450



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 156/299 (52%), Gaps = 8/299 (2%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S N +TF   +  C+     +   ++HAHVI  G +  + + NS++  Y     +  A  
Sbjct: 267 SPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLAST 326

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVS 123
           +F  +   D++SW+T+ISG ++ G  +EA D    +     +PN     SVLS C ++  
Sbjct: 327 VFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAI 386

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            + GK +HAH L    E N ++ +A+++ Y +CGS+     +F +    N+VSWT MI G
Sbjct: 387 LEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMING 446

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           YAE G+ +EA+ +F+++ K     P+  T + VL+ACS    +  G +  + +S  + + 
Sbjct: 447 YAEHGYSQEAIDLFKKLPKVG-LRPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQIC 505

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDKISWSTVISGLAMNG---CGRQALQ 298
            S      +I++  + G +  A  +   + + +D + WST++    ++G   CG++A +
Sbjct: 506 PSKDHYGCMIDLLCRAGRLNDAESMIQSMPFQRDDVVWSTLLRACRIHGDVDCGKRAAE 564



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 153/287 (53%), Gaps = 6/287 (2%)

Query: 49  NSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNA 108
           N +L   V    + +A Q+F+ ++  D +SWTTIISG        EA+ +F  + V+P  
Sbjct: 5   NLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGL 64

Query: 109 NT----LVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGY 164
           +     L   L AC   +S   G+++H +S++    N++ + +A++D Y++ G +     
Sbjct: 65  HMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCI 124

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224
           +F +MP RNVVSWT +I G    G+ KEA++ F +M   ++   +  T  + L AC+   
Sbjct: 125 VFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMW-IQKVGCDTYTFSSALKACADSG 183

Query: 225 ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVI 284
           AL++G+ +H   + +   +  + V N +  MY KCG +   +++F  +  +D +SW+T+I
Sbjct: 184 ALNYGREIHCQ-TLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTII 242

Query: 285 SGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
                 G    A++ F  M    V P++ TF A+IS C+  G ++ G
Sbjct: 243 MSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWG 289



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 77/171 (45%), Gaps = 4/171 (2%)

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
           N V+   VK G +  A Q+F+ +  +D+ISW+T+ISG        +AL LFS M +    
Sbjct: 5   NLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGL 64

Query: 310 PDDVTFIAL-ISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
             D   ++L + AC     V  G  L    S   + V  +   + +VDMY + G ++E  
Sbjct: 65  HMDPFILSLALKACGLNMSVSFGESL-HGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGC 123

Query: 369 AFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDRIRQDLVNKKGVSVGTFA 418
              +EMP+    S W A++    R   N E         + K G    TF+
Sbjct: 124 IVFKEMPLRNVVS-WTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFS 173


>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
 gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
          Length = 565

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 149/450 (33%), Positives = 257/450 (57%), Gaps = 14/450 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YTF   LK C+      + + +H  ++  G   DI++  SL++ Y     I  A ++F
Sbjct: 126 DRYTFPSLLKVCASEGKMMEGMALHGSILRCGVDEDIYVTTSLVNLYGKGGLIDCARKVF 185

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVS--HKL 126
           + +   +VVSWT +I G S  G   EA  +F   D+ P  N     +++ ++++    K+
Sbjct: 186 DGMSERNVVSWTAMIVGYSSIGNLVEAKRLF---DLMPERN-----VASWNAIIGGYMKM 237

Query: 127 GKAIHAH-SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           G    A  +   + E N++    ++D Y + G + S   LF K P+R++++W+ +I GY 
Sbjct: 238 GDVKSAEKAFDEMPEKNVVSFTTMIDGYAKAGDMLSARNLFQKAPERDIIAWSALISGYT 297

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G   EAV  F EM  ++  +P++  L +++ ACS +  L   K+V SY +TR  + + 
Sbjct: 298 QNGQPNEAVKTFLEMS-SRNVKPDKFVLTSLMLACSQLGNLDLAKWVDSY-ATRCSVDLR 355

Query: 246 NL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
              V  A+I+M  KCG++  A+ +F  +  +D IS+ +V+ GL+++G G QA+ LF  M+
Sbjct: 356 GAHVTAALIDMNAKCGNMERAMYLFEKMPKRDLISYCSVMQGLSIHGHGDQAVSLFERML 415

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
              + PDDV F  +++ACS  GLVD+G   F+ M   Y +VP + HYAC+VD+  R+G L
Sbjct: 416 GEDLTPDDVAFTVILTACSRAGLVDEGWHYFEMMRCKYSMVPSVDHYACIVDLLSRSGRL 475

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           +EA   I+ +P+++    WGALL AC+++ + E+ + +   L+  +  + G + L+SN +
Sbjct: 476 KEAYELIKSVPVQSHAGAWGALLGACKLYCDSELAEVVASRLIEIEPENAGNYVLLSNIY 535

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           A ADRW D + +R+++   GL+K  GCSWI
Sbjct: 536 AAADRWLDVSAVRNQMNERGLRKIPGCSWI 565



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 169/374 (45%), Gaps = 18/374 (4%)

Query: 6   SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAH 65
           S+ + Y+ +  LK C     H    ++HAH+I+ G   D F+    +    +V  I  + 
Sbjct: 25  SNVSLYSISALLKLCK---THIDLHQVHAHLIQKGLEQDSFLVTQFISASNSVAHISYST 81

Query: 66  QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLV 122
            +F+ V+ P    W +++SG        + I ++  +   D  P+  T  S+L  C+S  
Sbjct: 82  SVFDRVLSPSTFLWNSLVSGYCAKLQFVDIISLYVRMKREDGAPDRYTFPSLLKVCASEG 141

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
               G A+H   LR   + +I +  ++++ Y + G +     +F  M +RNVVSWT MI 
Sbjct: 142 KMMEGMALHGSILRCGVDEDIYVTTSLVNLYGKGGLIDCARKVFDGMSERNVVSWTAMIV 201

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
           GY+  G   EA  +F  M      E N A+   ++     +  +   +     +  +  +
Sbjct: 202 GYSSIGNLVEAKRLFDLM-----PERNVASWNAIIGGYMKMGDVKSAEKAFDEMPEKNVV 256

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
           S + +     I+ Y K GD+  A  +F     +D I+WS +ISG   NG   +A++ F  
Sbjct: 257 SFTTM-----IDGYAKAGDMLSARNLFQKAPERDIIAWSALISGYTQNGQPNEAVKTFLE 311

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY-ACVVDMYGRA 361
           M    V PD     +L+ ACS  G +D    +  + +T   +  +  H  A ++DM  + 
Sbjct: 312 MSSRNVKPDKFVLTSLMLACSQLGNLDLAKWV-DSYATRCSVDLRGAHVTAALIDMNAKC 370

Query: 362 GLLEEAEAFIREMP 375
           G +E A     +MP
Sbjct: 371 GNMERAMYLFEKMP 384


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 152/464 (32%), Positives = 262/464 (56%), Gaps = 13/464 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML      N +TF  ALK+C+         + H  + + G + + F+Q  L+  Y     
Sbjct: 40  MLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLISMYCKGSL 99

Query: 61  IFSAHQIFNSVVFPD--VVSWTTIISGL---SKCGFHKEAIDMFCGID---VKPNANTLV 112
           + +A ++F          V +  ++SG    SKC    EA+ +F  ++   V  N+ TL+
Sbjct: 100 VDNARKVFEENFHSRKLTVCYNALVSGYVSNSKC---SEAVLLFRQMNEEGVPVNSVTLL 156

Query: 113 SVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKR 172
            ++ AC S ++ +LG ++H  +L+   ++++ + N  +  Y++CGS+     LF +MP +
Sbjct: 157 GLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVK 216

Query: 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYV 232
            ++SW  M+ GYA+ G     + +++ M+      P+  TLV VLS+C+++ A S G  V
Sbjct: 217 GLISWNAMVSGYAQNGLATNVLELYRNMDMNG-VHPDPVTLVGVLSSCANLGAQSVGHEV 275

Query: 233 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
              I      + +  + NA+INMY +CG++  A  VF+ +  +  +SW+ +I G  M+G 
Sbjct: 276 EFKIQAS-GFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGH 334

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
           G  A+QLF  MI + + PD   F+ ++SACSH GL DQGL  FK M   Y++ P  +HY+
Sbjct: 335 GEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYS 394

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           C+VD+ GRAG L+EA+  I  MPI+ + +VWGALL AC+IH+N E+ +   + ++  +  
Sbjct: 395 CMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPE 454

Query: 413 SVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           ++G + L+SN ++ A+  +   +IR  ++   LKK  GCS++E+
Sbjct: 455 NIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVEL 498



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 167/338 (49%), Gaps = 17/338 (5%)

Query: 79  WTTIISGLSK-CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHS 134
           W T +  L+K C F  +A+ ++  +     +PNA T    L +C++L    LG   H   
Sbjct: 17  WNTQLRELAKRCQF-LQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQI 75

Query: 135 LRNLNENNIILDNAILDFYIRCGSLASCGYLFVK--MPKRNVVSWTTMIGGYAERGFCKE 192
            +        +   ++  Y +   + +   +F +    ++  V +  ++ GY     C E
Sbjct: 76  TKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSE 135

Query: 193 AVSVFQEMEKTKEAEP-NEATLVNVLSACSSISALSFGKYVH-SYISTRYDLSVSNLVGN 250
           AV +F++M   +E  P N  TL+ ++ AC S   L  G  +H S +   +D  VS  V N
Sbjct: 136 AVLLFRQM--NEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVS--VVN 191

Query: 251 AVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP 310
             I MY+KCG V  A ++F+ +  K  ISW+ ++SG A NG     L+L+  M +N V P
Sbjct: 192 CFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHP 251

Query: 311 DDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEA 369
           D VT + ++S+C++ G    G  + FK  ++ +   P + +   +++MY R G L +A+A
Sbjct: 252 DPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNN--ALINMYARCGNLTKAQA 309

Query: 370 FIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLV 407
               MP E     W A++    +H + E+  ++ ++++
Sbjct: 310 VFDGMP-ERTLVSWTAIIGGYGMHGHGEIAVQLFKEMI 346


>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 513

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 168/493 (34%), Positives = 258/493 (52%), Gaps = 39/493 (7%)

Query: 6   SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYG--HLHDIFIQNSLLHFYVTVKDIFS 63
            S+NH   T  L   +     ++ L+I A +I      LH   I   L+       +++ 
Sbjct: 4   QSHNHLKLTTLLLNYAEHFQTKQLLQIQAQLITNPPLSLHPNLIAVKLIGACAANANLYH 63

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLV--SVLSAC 118
           A  IF  +  P+V SW  II     CG  + A++ F     +   PN N  +  S++ AC
Sbjct: 64  AQLIFAQLPNPNVFSWNAIIKAHINCGAWEHALNCFNRQLSLPSAPNPNEYIYTSLIKAC 123

Query: 119 SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWT 178
           + L +   G  +HA  +++  +NNI L  +++D Y +    AS G +F +MP R+VVSW 
Sbjct: 124 AGLEAIADGLKVHAVVIKSGLDNNIHLGTSLVDMYFKFREPASAGQVFDEMPLRDVVSWN 183

Query: 179 TM-------------------------------IGGYAERGFCKEAVSVFQEMEKTKEAE 207
           TM                               IGGY + G   +A+ VF EM+K     
Sbjct: 184 TMVSGYCLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSDAIEVFHEMQKVGGVV 243

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
           P++ TLV+VLSAC+ + AL FG+++  ++  R    ++  +GNA+I+MY KCG +  A +
Sbjct: 244 PDDVTLVSVLSACAHVGALDFGRWIDRFVGWR-GRGLNLYLGNALIDMYAKCGTMEEARR 302

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           +F+ +  +D ISWST+I G   +G   +A   +S M+   V P++VTF+ L+SACSH GL
Sbjct: 303 IFDGMRERDVISWSTMICGSGTHGDADEAFGYYSKMLECGVKPNEVTFMGLLSACSHAGL 362

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           VD+G+ LF  M   Y IVP++ HY CV+D+  RAG L+EAE  I  MPIE    VWGALL
Sbjct: 363 VDKGIELFSRMIQEYRIVPKVGHYGCVIDLLSRAGRLDEAEDLINSMPIEPNVIVWGALL 422

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
             CRIH++    +R+ Q L+       G++  ++   A   R +D       ++  G+ K
Sbjct: 423 GGCRIHKDFRRGERVAQHLLELDSEYTGSYVYIAGAKASVGRVDDAANCWLRMQHKGIIK 482

Query: 448 KTGCSWIEVNPSI 460
             GCS IEV+ ++
Sbjct: 483 DPGCSKIEVHNTV 495


>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 730

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 154/493 (31%), Positives = 265/493 (53%), Gaps = 43/493 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +T+   LKAC          ++HA +       ++F+ NSL+  Y    ++ +A  +F
Sbjct: 193 DKFTYPSVLKACGEKLDIAFGKKLHASINASCLGWNLFVHNSLVSMYAKTGELSTARCLF 252

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---------------------------- 100
            +++  D VSW T+ISG +  G  KEA ++F                             
Sbjct: 253 ENMLERDDVSWNTMISGYASKGMWKEAFELFGKMRVEGIELNIITWNTIAGGCVQSGNFE 312

Query: 101 ------------GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148
                       GID+   A T++  L ACS + + KLG+ IH  ++R+  +    + NA
Sbjct: 313 EALELLSHMRSYGIDMDSVA-TIIG-LGACSHIGAIKLGREIHGSAIRSFYDGVDNVKNA 370

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
           ++  Y RC  L     LF     +N+++W +M+ GY      +EA  +F+EM  +   EP
Sbjct: 371 LITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYTHMDRSEEASFLFREMLLSG-IEP 429

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           N  T+ ++L  C+ ++ L  GK  H YI  R       L+ N++++MY + G V  A ++
Sbjct: 430 NYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLLLWNSLVDMYARSGKVLEAKRL 489

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F+ ++ +D+++++++I+G  + G GR+AL+LF  M    + PD VT +A++SACSH GLV
Sbjct: 490 FDSISRRDEVTYTSLIAGYGIQGEGREALKLFDEMKKRHIKPDHVTMVAVLSACSHSGLV 549

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
            +G+ LF+ M + Y I+P+++H+AC+VD++GRAGLL +A+  I  MP     ++W  LL 
Sbjct: 550 TEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAGLLHKAKEMITRMPYRPSSAMWATLLG 609

Query: 389 ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
           ACRIH N E+ +   + L+  +  + G + L++N +A A  W    K+R  +R +G++K 
Sbjct: 610 ACRIHGNAEIGEWAAEKLLEMRPENSGYYVLIANMYAAAGCWSKLAKVRTYMRDLGVRKA 669

Query: 449 TGCSWIEVNPSIF 461
            GC+W++V    F
Sbjct: 670 PGCAWVDVGSGFF 682



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 170/381 (44%), Gaps = 50/381 (13%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           ++H  +I  G      I   L+ FY     +  AH I  +      + W  +IS   + G
Sbjct: 114 QLHTLIISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNLLISSYVRNG 173

Query: 91  FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
            H EA+  +  +    ++P+  T  SVL AC   +    GK +HA    +    N+ + N
Sbjct: 174 LHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASCLGWNLFVHN 233

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME------ 201
           +++  Y + G L++   LF  M +R+ VSW TMI GYA +G  KEA  +F +M       
Sbjct: 234 SLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGKMRVEGIEL 293

Query: 202 ----------------------------KTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
                                       ++   + +    +  L ACS I A+  G+ +H
Sbjct: 294 NIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIGAIKLGREIH 353

Query: 234 -SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
            S I + YD  V N V NA+I MY +C  +  A  +F     K+ I+W++++SG      
Sbjct: 354 GSAIRSFYD-GVDN-VKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYTHMDR 411

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG-----LILFKAMSTVYEIVPQ 347
             +A  LF  M+++ + P+ VT  +++  C+    +  G      IL +A    Y ++  
Sbjct: 412 SEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLLL-- 469

Query: 348 MQHYACVVDMYGRAGLLEEAE 368
              +  +VDMY R+G + EA+
Sbjct: 470 ---WNSLVDMYARSGKVLEAK 487



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 107/221 (48%), Gaps = 2/221 (0%)

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
           +L S   GK +H   +    E + I+   ++ FY     LA    +       + + W  
Sbjct: 105 NLKSLSQGKQLHTLIISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNL 164

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           +I  Y   G   EA+S +++M   K   P++ T  +VL AC     ++FGK +H+ I+  
Sbjct: 165 LISSYVRNGLHGEALSAYKQMTH-KGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINAS 223

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
             L  +  V N++++MY K G++  A  +F  +  +D +SW+T+ISG A  G  ++A +L
Sbjct: 224 C-LGWNLFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFEL 282

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340
           F  M +  +  + +T+  +   C   G  ++ L L   M +
Sbjct: 283 FGKMRVEGIELNIITWNTIAGGCVQSGNFEEALELLSHMRS 323


>gi|296089801|emb|CBI39620.3| unnamed protein product [Vitis vinifera]
          Length = 591

 Score =  281 bits (719), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 154/463 (33%), Positives = 261/463 (56%), Gaps = 19/463 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV-KDIFSAHQI 67
           N +T +  LKAC           +H   I++G    I++ N+L+  Y T    +  A  +
Sbjct: 92  NAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMV 151

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---------DVKPNANTLVSVLSAC 118
           F  +   + VSWTT+I+G +    H++  D + G+         +V+ N  +    + AC
Sbjct: 152 FRGIHLKNEVSWTTLIAGYT----HRD--DGYGGLRVFRQMLLEEVELNPFSFSIAVRAC 205

Query: 119 SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWT 178
           +S+ SH  G+ +HA   ++  E+N+ + N+ILD Y RC   +     F +M +R++++W 
Sbjct: 206 TSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWN 265

Query: 179 TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST 238
           T+I GY ER    E++ VF  ME ++   PN  T  ++++AC++++ L+ G+ +H  I  
Sbjct: 266 TLIAGY-ERSNPTESLYVFSMME-SEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRI-I 322

Query: 239 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQ 298
           R  L  +  + NA+I+MY KCG++  + QVF  ++ +D +SW+ ++ G   +G G +A++
Sbjct: 323 RRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVE 382

Query: 299 LFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMY 358
           LF  M+ + + PD V F+A++SACSH GLVD+GL  FK M   Y I P  + Y CVVD+ 
Sbjct: 383 LFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLL 442

Query: 359 GRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFA 418
           GRAG +EEA   I  MP + +  VWG  L AC+ H    +       +++ +    GT+ 
Sbjct: 443 GRAGKVEEAYELIESMPFKPDECVWGPFLGACKAHTFPNLGKLAAHRILDLRPHMAGTYV 502

Query: 419 LMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           ++SN +A   +W +  ++R  ++RMG KK+TG SW+EV   ++
Sbjct: 503 MLSNIYAADGKWGEFARLRKLMKRMGNKKETGRSWVEVGNHVY 545



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 177/368 (48%), Gaps = 40/368 (10%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 120
           A  +  S     ++    +I+G + C  H  A  +FC +   ++ PNA T+ SVL AC  
Sbjct: 46  ATTLIKSYFGKGLIGEALMIAGYTSCNNHTHAWMVFCEMMNEELDPNAFTISSVLKACKG 105

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCG-SLASCGYLFVKMPKRNVVSWTT 179
           +     G+ +H  ++++  +  I +DNA++D Y  C  S+     +F  +  +N VSWTT
Sbjct: 106 MKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRGIHLKNEVSWTT 165

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           +I GY  R      + VF++M   +E E N  +    + AC+SI + +FG+ +H+ + T+
Sbjct: 166 LIAGYTHRDDGYGGLRVFRQM-LLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAV-TK 223

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
           +    +  V N++++MY +C     A + F  +  +D I+W+T+I+G   +    ++L +
Sbjct: 224 HGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGYERSN-PTESLYV 282

Query: 300 FSLMIINAVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYEIVPQM 348
           FS+M      P+  TF ++++AC+           HG ++ +GL    A+S         
Sbjct: 283 FSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALSNA------- 335

Query: 349 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDR--- 401
                ++DMY + G + ++      M    +   W A++     H       E+FD+   
Sbjct: 336 -----LIDMYSKCGNIADSHQVFGGMS-RRDLVSWTAMMIGYGTHGYGEEAVELFDKMVR 389

Query: 402 --IRQDLV 407
             IR D V
Sbjct: 390 SGIRPDRV 397



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 20/235 (8%)

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAV---------------SVFQEMEKTKEAEPNEATL 213
           +PK   V  TT+I  Y  +G   EA+                VF EM   +E +PN  T+
Sbjct: 38  IPKGPSVLATTLIKSYFGKGLIGEALMIAGYTSCNNHTHAWMVFCEM-MNEELDPNAFTI 96

Query: 214 VNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCG-DVGIAIQVFNML 272
            +VL AC  +  LS+G+ VH  ++ ++ L     V NA+++MY  C   +  A  VF  +
Sbjct: 97  SSVLKACKGMKCLSYGRLVHG-LAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRGI 155

Query: 273 AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL 332
             K+++SW+T+I+G      G   L++F  M++  V  +  +F   + AC+  G    G 
Sbjct: 156 HLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGE 215

Query: 333 ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
            L  A+ T +     +     ++DMY R     EA  +  EM  + +   W  L+
Sbjct: 216 QLHAAV-TKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMN-QRDLITWNTLI 268


>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570 [Vitis vinifera]
          Length = 607

 Score =  281 bits (719), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 154/463 (33%), Positives = 261/463 (56%), Gaps = 19/463 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV-KDIFSAHQI 67
           N +T +  LKAC           +H   I++G    I++ N+L+  Y T    +  A  +
Sbjct: 108 NAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMV 167

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---------DVKPNANTLVSVLSAC 118
           F  +   + VSWTT+I+G +    H++  D + G+         +V+ N  +    + AC
Sbjct: 168 FRGIHLKNEVSWTTLIAGYT----HRD--DGYGGLRVFRQMLLEEVELNPFSFSIAVRAC 221

Query: 119 SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWT 178
           +S+ SH  G+ +HA   ++  E+N+ + N+ILD Y RC   +     F +M +R++++W 
Sbjct: 222 TSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWN 281

Query: 179 TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST 238
           T+I GY ER    E++ VF  ME ++   PN  T  ++++AC++++ L+ G+ +H  I  
Sbjct: 282 TLIAGY-ERSNPTESLYVFSMME-SEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRI-I 338

Query: 239 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQ 298
           R  L  +  + NA+I+MY KCG++  + QVF  ++ +D +SW+ ++ G   +G G +A++
Sbjct: 339 RRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVE 398

Query: 299 LFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMY 358
           LF  M+ + + PD V F+A++SACSH GLVD+GL  FK M   Y I P  + Y CVVD+ 
Sbjct: 399 LFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLL 458

Query: 359 GRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFA 418
           GRAG +EEA   I  MP + +  VWG  L AC+ H    +       +++ +    GT+ 
Sbjct: 459 GRAGKVEEAYELIESMPFKPDECVWGPFLGACKAHTFPNLGKLAAHRILDLRPHMAGTYV 518

Query: 419 LMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           ++SN +A   +W +  ++R  ++RMG KK+TG SW+EV   ++
Sbjct: 519 MLSNIYAADGKWGEFARLRKLMKRMGNKKETGRSWVEVGNHVY 561



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 189/385 (49%), Gaps = 40/385 (10%)

Query: 47  IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---D 103
           +  +L+  Y     I  A  +F+ +   DVV+WT +I+G + C  H  A  +FC +   +
Sbjct: 45  LATTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMNEE 104

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCG-SLASC 162
           + PNA T+ SVL AC  +     G+ +H  ++++  +  I +DNA++D Y  C  S+   
Sbjct: 105 LDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDA 164

Query: 163 GYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS 222
             +F  +  +N VSWTT+I GY  R      + VF++M   +E E N  +    + AC+S
Sbjct: 165 CMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQM-LLEEVELNPFSFSIAVRACTS 223

Query: 223 ISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWST 282
           I + +FG+ +H+ + T++    +  V N++++MY +C     A + F  +  +D I+W+T
Sbjct: 224 IGSHTFGEQLHAAV-TKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNT 282

Query: 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS-----------HGGLVDQG 331
           +I+G   +    ++L +FS+M      P+  TF ++++AC+           HG ++ +G
Sbjct: 283 LIAGYERSN-PTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRG 341

Query: 332 LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACR 391
           L    A+S              ++DMY + G + ++      M    +   W A++    
Sbjct: 342 LDGNLALSNA------------LIDMYSKCGNIADSHQVFGGMS-RRDLVSWTAMMIGYG 388

Query: 392 IHRND----EMFDR-----IRQDLV 407
            H       E+FD+     IR D V
Sbjct: 389 THGYGEEAVELFDKMVRSGIRPDRV 413



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 120/245 (48%), Gaps = 5/245 (2%)

Query: 144 ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
           +L   ++  Y   G +     LF +MP+R+VV+WT MI GY        A  VF EM   
Sbjct: 44  VLATTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEM-MN 102

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCG-DV 262
           +E +PN  T+ +VL AC  +  LS+G+ VH  ++ ++ L     V NA+++MY  C   +
Sbjct: 103 EELDPNAFTISSVLKACKGMKCLSYGRLVHG-LAIKHGLDGFIYVDNALMDMYATCCVSM 161

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
             A  VF  +  K+++SW+T+I+G      G   L++F  M++  V  +  +F   + AC
Sbjct: 162 DDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRAC 221

Query: 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
           +  G    G  L  A+ T +     +     ++DMY R     EA  +  EM  + +   
Sbjct: 222 TSIGSHTFGEQLHAAV-TKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMN-QRDLIT 279

Query: 383 WGALL 387
           W  L+
Sbjct: 280 WNTLI 284


>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  281 bits (719), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 161/456 (35%), Positives = 256/456 (56%), Gaps = 12/456 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD--IFSAHQ 66
           +++T+   LKAC+          IHAHV ++G   DIF+ NSL+  Y       +  A  
Sbjct: 119 DNFTYPFLLKACTGPSSLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMS 178

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKL 126
           +F ++   DVV+W ++I GL +CG  + A  +F   D  P  + +VS  +        K 
Sbjct: 179 LFLAMKERDVVTWNSMIGGLVRCGELEGACKLF---DEMPERD-MVSWNTMLDGYA--KA 232

Query: 127 GKAIHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           G+   A  L   + + NI+  + ++  Y + G +     LF + P +NVV WTT+I GYA
Sbjct: 233 GEMDRAFELFERMPQRNIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYA 292

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           E+GF +EA  ++ +ME+     P++  L+++L+AC+    L  GK +H+ +  R+     
Sbjct: 293 EKGFVREATELYGKMEEAG-LRPDDGFLISILAACAESGMLGLGKRIHASMR-RWRFRCG 350

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFN-MLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
             V NA I+MY KCG +  A  VF+ M+A KD +SW+++I G AM+G G +AL+LFS M+
Sbjct: 351 TKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSRMV 410

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
                PD  TF+ L+ AC+H GLV++G   F +M  VY IVPQ++HY C++D+ GR G L
Sbjct: 411 PEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHL 470

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           +EA   +R MP+E    + G LLNACR+H + +    + + L   +    G ++L+SN +
Sbjct: 471 KEAFTLLRSMPMEPNAIILGTLLNACRMHNDVDFARAVCEQLFKVEPTDPGNYSLLSNIY 530

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           A A  W +   +R ++   G +K +G S IEV   +
Sbjct: 531 AQAGDWMNVANVRLQMMNTGGQKPSGASSIEVEEEV 566



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 173/373 (46%), Gaps = 17/373 (4%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           +IHA V++     D+F+   L+  +   + + SA  +FN V  P+V  + +II   +   
Sbjct: 39  QIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNT 98

Query: 91  FHKE-AIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
            H     + F  +    + P+  T   +L AC+   S  L + IHAH  +     +I + 
Sbjct: 99  SHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHAHVEKFGFYGDIFVP 158

Query: 147 NAILDFYIRCGSLASCGY--LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           N+++D Y RCGS    G   LF+ M +R+VV+W +MIGG    G  + A  +F EM    
Sbjct: 159 NSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLFDEM---- 214

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
             E +  +   +L   +    +     +   +  R  +S S +V       Y K GD+ +
Sbjct: 215 -PERDMVSWNTMLDGYAKAGEMDRAFELFERMPQRNIVSWSTMVCG-----YSKGGDMDM 268

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
           A  +F+    K+ + W+T+I+G A  G  R+A +L+  M    + PDD   I++++AC+ 
Sbjct: 269 ARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAE 328

Query: 325 GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 384
            G++  G  +  +M   +      +     +DMY + G L+ A      M  + +   W 
Sbjct: 329 SGMLGLGKRIHASMRR-WRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWN 387

Query: 385 ALLNACRIHRNDE 397
           +++    +H + E
Sbjct: 388 SMIQGFAMHGHGE 400


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  281 bits (719), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 152/453 (33%), Positives = 261/453 (57%), Gaps = 11/453 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T+++ +K C +    Q+A  +H HV   G+    F+ N+L++ YV    +  A  +F+ +
Sbjct: 18  TYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLFDEM 77

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              +VVSWTT+IS  S    + +A+D    +    V+PN  T  SVL AC  L++ +   
Sbjct: 78  PDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNLR--- 134

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H   L+   E+++ + +A++D Y + G       +F +M   ++V W ++IGG+A+  
Sbjct: 135 QLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNS 194

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
              E + +++ M++  +   +++TL +VL AC+ ++ L  G+ VH ++  +YD  +  ++
Sbjct: 195 DGDETLHLYKRMKRA-DFVADQSTLTSVLRACTGLALLELGRQVHVHV-LKYDQDL--IL 250

Query: 249 GNAVINMYVKCGDVGIAIQVF-NMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
            NA+++MY KCG +  A  +F  M+  KD ISWST+I+GLA NG    AL+LF  M    
Sbjct: 251 NNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKG 310

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
             P+ +T + ++ ACSH GLV+ G   F++M   + I P  +HY C++D+ GRAG L+EA
Sbjct: 311 PKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEA 370

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
              I EM  E +   W  LL ACR+H+N ++     ++++       GT+ L+SN +A +
Sbjct: 371 VKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYANS 430

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            +WED  ++R ++R  G+KK  GCSWIEV+  +
Sbjct: 431 QKWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQV 463



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 128/281 (45%), Gaps = 8/281 (2%)

Query: 107 NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLF 166
           +A T   ++  C    + +  + +H H   N  E    L N +++ Y++ G L     LF
Sbjct: 15  DAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLF 74

Query: 167 VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 226
            +MP RNVVSWTTMI  Y+      +A+     M + +   PN  T  +VL AC  +  L
Sbjct: 75  DEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLR-EGVRPNMYTYSSVLRACDGLLNL 133

Query: 227 SFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
              + +H  I  +  L     V +A+I+ Y K G+   A+ VFN +   D + W+++I G
Sbjct: 134 ---RQLHGSI-LKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGG 189

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 346
            A N  G + L L+  M       D  T  +++ AC+   L++ G    +    V +   
Sbjct: 190 FAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGR---QVHVHVLKYDQ 246

Query: 347 QMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
            +     ++DMY + G LE+A      M  E +   W  ++
Sbjct: 247 DLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMI 287


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  281 bits (719), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 149/450 (33%), Positives = 267/450 (59%), Gaps = 7/450 (1%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           +   L  C      ++   +H H+I+  +L  ++++  L+  Y     +  A  +F+ + 
Sbjct: 65  YDSILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMP 124

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKA 129
             +VVSWT +IS  S+ GF  EA+++F  +   D +PN  T  ++L++C   +  + G+ 
Sbjct: 125 QRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQ 184

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           IH+ +++   E+++ + +++LD Y + G +     +F  +P+R+VV+ T +I GYA+ G 
Sbjct: 185 IHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGL 244

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
            +EA+ +F++++  +    N  T  +VL+A S ++AL+ GK VHS++      S   L+ 
Sbjct: 245 DEEALKLFRQLQ-IEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLL- 302

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII-NAV 308
           N++I+MY KCG+V  A ++F+ +  +  ISW+ ++ G + +G  R+ L+LF LM   N V
Sbjct: 303 NSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKV 362

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE-IVPQMQHYACVVDMYGRAGLLEEA 367
            PD +T++A++S CSHG L D GL +F  M    + I P + HY CVVD+ GRAG +EEA
Sbjct: 363 KPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEA 422

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
             FI++MP     ++WG+LL +CR+H + E+   + Q L+  +  + G + ++SN +A A
Sbjct: 423 FDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASA 482

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            +WED   IRD ++   + K+ G SW+E++
Sbjct: 483 GKWEDMRNIRDLMQEKAVTKEPGRSWVELD 512



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 178/372 (47%), Gaps = 44/372 (11%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML   +  NH+TF   L +C  +   +   +IH+  I+  +   +F+ +SLL  Y     
Sbjct: 154 MLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGR 213

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSA 117
           I  AH +F+ +   DVV+ T IISG ++ G  +EA+ +F  + ++    N+ T  SVL+A
Sbjct: 214 ICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTA 273

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
            S L +   GK +H+H LR+   + ++L N+++D Y +CG++     +F  MP+R  +SW
Sbjct: 274 LSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISW 333

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
             M+ GY++ G  +E + +F+ M +  + +P+  T + VLS CS           H  + 
Sbjct: 334 NAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCS-----------HGQLE 382

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR--Q 295
                                  D+G+ I  +NM+  KD I       G  ++  GR  +
Sbjct: 383 -----------------------DMGLEI-FYNMVNGKDGIEPDIGHYGCVVDLLGRAGR 418

Query: 296 ALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ-MQHYACV 354
             + F  +      P    + +L+ +C     V+ G+I+ + +    E+ P+   +Y  +
Sbjct: 419 VEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKL---LELEPENAGNYVIL 475

Query: 355 VDMYGRAGLLEE 366
            ++Y  AG  E+
Sbjct: 476 SNLYASAGKWED 487


>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  281 bits (719), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 158/462 (34%), Positives = 267/462 (57%), Gaps = 38/462 (8%)

Query: 31  EIHAHVIEYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
           +IH H + +G L  + +++NSL+  YV       A Q+F+ +   +VVS+ T+I G +K 
Sbjct: 148 QIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKV 207

Query: 90  GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
           G     +++F  +    ++P+  T++ +L  C  L   KLGK++HA   +++  +N+IL 
Sbjct: 208 GNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILY 267

Query: 147 NAILDFYIRCGSLASC--------------------GY-----------LFVKMPKRNVV 175
           NA+LD Y++C  L                       GY           LF ++P R++V
Sbjct: 268 NALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIV 327

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           SW ++I GYA+ G       +F  M   +  +P++ T+VN++SA + + AL  G+++H  
Sbjct: 328 SWNSLISGYAQNGDYVTVKCLFTRM-FAENVKPDKVTIVNLISAVAEMGALDQGRWIHG- 385

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
           ++ +    +    G+A+I+MY KCG +  A  +FN +  KD  +W+T+I+G A +G G +
Sbjct: 386 LAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNK 445

Query: 296 ALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVV 355
           AL+LFS+M      P+DVTF+++++ACSH GLVD+GL +F +M   Y I P ++HY C+V
Sbjct: 446 ALELFSVMQAETK-PNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLV 504

Query: 356 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVG 415
           D+  R+G L +A   I +MP+E   S+WGA+L+ACR+HRN E+ +R   +L+  +    G
Sbjct: 505 DLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLKLEPEKEG 564

Query: 416 TFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            + L+SN +A   RW  ++ IR+ +   G+KK  GCS + V+
Sbjct: 565 GYILLSNVYATCGRWSYSDSIREVMNSRGVKKIAGCSSVAVD 606



 Score = 44.7 bits (104), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 8/147 (5%)

Query: 170 PKRNVVSWTTMIGGYAERGFCKE-AVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           P  N+  + TMI G+    F  E A ++++ M +     P+  T + +L     ++ +  
Sbjct: 93  PYPNLYIFNTMILGFP---FSNEKAFTIYRSMLQNG-TYPDRQTFLYLLQTTKFVAEV-- 146

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
            K +H +      LS    + N++I  YV  G    A Q+F+ ++ ++ +S++T+I G A
Sbjct: 147 -KQIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFA 205

Query: 289 MNGCGRQALQLFSLMIINAVFPDDVTF 315
             G     L+LF  M  + + PDD T 
Sbjct: 206 KVGNILGILELFHDMRSHGLEPDDFTM 232


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  281 bits (719), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 146/439 (33%), Positives = 264/439 (60%), Gaps = 14/439 (3%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           ++HAH+I  G      +   L+    T   I  A ++F +V  PD   + +++   SK G
Sbjct: 45  QVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFG 104

Query: 91  FHKEAI-----DMFCGIDVKPNAN-TLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
           F  + +      +F G    P +N T  SV+ AC+ L + +LGK IH+H +     +++ 
Sbjct: 105 FSIDTVLFYRRMLFSG---APQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMY 161

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           +  A++  Y +   +     +F  MP+R +++W ++I GY + G  +E++ +F  M ++ 
Sbjct: 162 VQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESG 221

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVG 263
             +P+ AT+V++LS+CS + AL FG ++H Y     +DL+V  ++G ++INMY +CG+V 
Sbjct: 222 -FQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNV--VLGTSLINMYTRCGNVS 278

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
            A +VF+ +  ++ ++W+ +ISG  M+G GRQA++LF+ M      P+++TF+A++SAC+
Sbjct: 279 KAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACA 338

Query: 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIRE-MPIEAEWSV 382
           H GL+D G  +F +M   Y +VP ++H  C+VDM+GRAGLL +A  FI++ +P E   +V
Sbjct: 339 HSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAV 398

Query: 383 WGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442
           W ++L ACR+HRN ++  ++ + +++ +  + G + ++SN +A A R +    +R+ + R
Sbjct: 399 WTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTR 458

Query: 443 MGLKKKTGCSWIEVNPSIF 461
             LKK+ G S IE+N   +
Sbjct: 459 RRLKKQVGYSTIEINRKTY 477



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 161/295 (54%), Gaps = 6/295 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML   +  ++YTFT  +KAC+     +   EIH+HV+  G+  D+++Q +L+  Y    D
Sbjct: 116 MLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASD 175

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           +  A ++F+++    +++W ++ISG  + G  +E+I +F  +     +P++ T+VS+LS+
Sbjct: 176 MKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSS 235

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           CS L +   G  +H ++  N  + N++L  ++++ Y RCG+++    +F  M +RNVV+W
Sbjct: 236 CSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTW 295

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
           T MI GY   G+ ++A+ +F EM +     PN  T V VLSAC+    +  G+ V S + 
Sbjct: 296 TAMISGYGMHGYGRQAMELFTEM-RAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMK 354

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD--KISWSTVISGLAMN 290
             Y L         +++M+ + G +  A Q       K+     W++++    M+
Sbjct: 355 EAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMH 409


>gi|242079801|ref|XP_002444669.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
 gi|241941019|gb|EES14164.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
          Length = 581

 Score =  281 bits (718), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 160/460 (34%), Positives = 261/460 (56%), Gaps = 14/460 (3%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           + ++Y+   A  A S         ++H+  ++ G + D F+ NSL++ Y +     +A Q
Sbjct: 90  TLDNYSLNIAFSATSRLPSVSVGAQLHSLSVKLGLVSDTFVLNSLINMYSSCSYPATARQ 149

Query: 67  IFNSVVFP----DVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN----TLVSVLSAC 118
           + +S   P    D VSW TIISG  + G   +A+  F G  VK        TL++ L A 
Sbjct: 150 VLDSA--PQGACDTVSWNTIISGYLRGGMPNKALQAF-GQMVKEQVTLDDVTLLNALVAS 206

Query: 119 SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWT 178
           +     K+G+  H+  + N    N  + ++++  Y +CG +     +F  M +RNVV WT
Sbjct: 207 AKAGKVKVGRLCHSLVVVNGAGINCYMGSSLISMYAKCGLVEDARKVFHGMHERNVVCWT 266

Query: 179 TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST 238
           +MI GY + G  KEAV++F++M+ T   + ++ T+  V+S+C+ + AL  G+YVH+Y   
Sbjct: 267 SMISGYTQLGKFKEAVNLFRDMQITG-MKVDDGTIATVVSSCAQMGALDLGRYVHAYCDV 325

Query: 239 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQ 298
            + L     V N++I+MY KCGD+  A ++F  L  +D  SW+ +I G  +NG   +AL 
Sbjct: 326 -HGLGKELSVKNSLIDMYSKCGDINKAHEIFCGLTKRDVFSWTAMIMGFTVNGLCSEALD 384

Query: 299 LFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
           LF+ M     V P++VTF+ ++++CSHGGLV+QG   F+ MS VY++ P+++HY C+VD+
Sbjct: 385 LFAQMEGEGKVMPNEVTFLGVLTSCSHGGLVEQGFHYFQRMSMVYKLAPRIEHYGCMVDL 444

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTF 417
            GRA LL EAE FI+ MPI  +  VW +LL ACR      + + + + ++  +       
Sbjct: 445 LGRAKLLTEAEQFIKNMPIAPDVVVWRSLLFACRACGEVGLAEFVAERILELEPKKCAGH 504

Query: 418 ALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            L+SN +A   RW D N++R  +    + K+ GCS+IEV+
Sbjct: 505 VLLSNVYATTSRWVDVNELRTSMDNSRMSKQPGCSFIEVD 544


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  281 bits (718), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 152/461 (32%), Positives = 257/461 (55%), Gaps = 11/461 (2%)

Query: 4   CPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFS 63
            P+   ++ F   + AC+ +     A +IHAH+       D F+ NSL+H Y     +  
Sbjct: 48  APTPRVYHAF---ITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVE 104

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 120
           AH++F+ +   D+VSWT++I+G ++     EAI +  G+     KPN  T  S+L A  +
Sbjct: 105 AHKVFDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGA 164

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
                +G  IHA +++     ++ + +A+LD Y RCG +     +F K+  +N VSW  +
Sbjct: 165 YADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNAL 224

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTR 239
           I G+A +G  + A+ VF EM++    E    T  ++ SA + I AL  GK+VH++ I +R
Sbjct: 225 ISGFARKGDGETALMVFAEMQRNG-FEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSR 283

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
             L+    VGN +++MY K G +  A +VF  +  KD ++W+++++  A  G G++A+  
Sbjct: 284 QKLTA--FVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSH 341

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
           F  M  + ++ + ++F+ +++ACSHGGLV +G   F  M   Y + P+++HY  VVD+ G
Sbjct: 342 FEEMRKSGIYLNQISFLCILTACSHGGLVKEGKHYFD-MIKEYNLEPEIEHYVTVVDLLG 400

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFAL 419
           RAGLL  A  FI +MP+E   +VWGALL ACR+H+N ++       +        G   L
Sbjct: 401 RAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVL 460

Query: 420 MSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           + N +A    W+   ++R  ++  G+KK+  CSW+E+  S+
Sbjct: 461 LYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIENSV 501



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 150/298 (50%), Gaps = 12/298 (4%)

Query: 96  IDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIR 155
           +D     ++ P      + ++AC+   +    + IHAH   +    +  LDN+++  Y +
Sbjct: 39  LDHLDSGELAPTPRVYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCK 98

Query: 156 CGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVN 215
           CGS+     +F KM  +++VSWT++I GYA+     EA+ +   M K +  +PN  T  +
Sbjct: 99  CGSVVEAHKVFDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGR-FKPNGFTFAS 157

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           +L A  + +    G  +H+ ++ + D      VG+A+++MY +CG + +A  VF+ L  K
Sbjct: 158 LLKAVGAYADSGIGGQIHA-LAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSK 216

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI-- 333
           + +SW+ +ISG A  G G  AL +F+ M  N       T+ ++ SA +  G ++QG    
Sbjct: 217 NGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGKWVH 276

Query: 334 --LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
             + K+   +   V        ++DMY ++G + +A   + E  +  +   W ++L A
Sbjct: 277 AHMIKSRQKLTAFVGN-----TMLDMYAKSGSMIDARK-VFERVLNKDLVTWNSMLTA 328


>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  281 bits (718), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 158/462 (34%), Positives = 267/462 (57%), Gaps = 38/462 (8%)

Query: 31  EIHAHVIEYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
           +IH H + +G L  + +++NSL+  YV       A Q+F+ +   +VVS+ T+I G +K 
Sbjct: 83  QIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKV 142

Query: 90  GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
           G     +++F  +    ++P+  T++ +L  C  L   KLGK++HA   +++  +N+IL 
Sbjct: 143 GNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILY 202

Query: 147 NAILDFYIRCGSLASC--------------------GY-----------LFVKMPKRNVV 175
           NA+LD Y++C  L                       GY           LF ++P R++V
Sbjct: 203 NALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIV 262

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           SW ++I GYA+ G       +F  M   +  +P++ T+VN++SA + + AL  G+++H  
Sbjct: 263 SWNSLISGYAQNGDYVTVKCLFTRM-FAENVKPDKVTIVNLISAVAEMGALDQGRWIHG- 320

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
           ++ +    +    G+A+I+MY KCG +  A  +FN +  KD  +W+T+I+G A +G G +
Sbjct: 321 LAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNK 380

Query: 296 ALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVV 355
           AL+LFS+M      P+DVTF+++++ACSH GLVD+GL +F +M   Y I P ++HY C+V
Sbjct: 381 ALELFSVMQAETK-PNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLV 439

Query: 356 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVG 415
           D+  R+G L +A   I +MP+E   S+WGA+L+ACR+HRN E+ +R   +L+  +    G
Sbjct: 440 DLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLKLEPEKEG 499

Query: 416 TFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            + L+SN +A   RW  ++ IR+ +   G+KK  GCS + V+
Sbjct: 500 GYILLSNVYATCGRWSYSDSIREVMNSRGVKKIAGCSSVAVD 541



 Score = 44.7 bits (104), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 8/147 (5%)

Query: 170 PKRNVVSWTTMIGGYAERGFCKE-AVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           P  N+  + TMI G+    F  E A ++++ M +     P+  T + +L     ++ +  
Sbjct: 28  PYPNLYIFNTMILGFP---FSNEKAFTIYRSMLQNG-TYPDRQTFLYLLQTTKFVAEV-- 81

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
            K +H +      LS    + N++I  YV  G    A Q+F+ ++ ++ +S++T+I G A
Sbjct: 82  -KQIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFA 140

Query: 289 MNGCGRQALQLFSLMIINAVFPDDVTF 315
             G     L+LF  M  + + PDD T 
Sbjct: 141 KVGNILGILELFHDMRSHGLEPDDFTM 167


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  281 bits (718), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 143/456 (31%), Positives = 269/456 (58%), Gaps = 5/456 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +T + ALKAC+     +   ++H+ +I+     D+F    L+  Y   + +  A + +
Sbjct: 283 NMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAY 342

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           +S+   D+++W  +ISG S+CG H +A+ +F  +   D+  N  TL +VL + +SL + K
Sbjct: 343 DSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIK 402

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           + K IH  S+++   ++  + N++LD Y +C  +     +F +    ++V++T+MI  Y+
Sbjct: 403 VCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYS 462

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G  +EA+ ++ +M+   + +P+     ++L+AC+++SA   GK +H + + ++     
Sbjct: 463 QYGDGEEALKLYLQMQDA-DIKPDPFICSSLLNACANLSAYEQGKQLHVH-AIKFGFMCD 520

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
               N+++NMY KCG +  A + F+ +  +  +SWS +I G A +G G++AL+LF+ M+ 
Sbjct: 521 IFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLR 580

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
           + V P+ +T ++++ AC+H GLV++G   F+ M  ++ I P  +HYAC++D+ GR+G L 
Sbjct: 581 DGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLN 640

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EA   +  +P EA+  VWGALL A RIH+N E+  +  + L + +    GT  L++N +A
Sbjct: 641 EAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYA 700

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
            A  WE+  K+R  ++   +KK+ G SWIE+   ++
Sbjct: 701 SAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVY 736



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 191/369 (51%), Gaps = 19/369 (5%)

Query: 30  LEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
           +E+HAH+I++G   D  ++N L+  Y   +    A ++ +     DVVSW++++SG  + 
Sbjct: 1   MELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQN 60

Query: 90  GFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
           GF +EA+ +F   C + VK N  T  SVL ACS      +G+ +H  ++    E++  + 
Sbjct: 61  GFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVA 120

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           N ++  Y +CG L     LF  + +RNVVSW  +   Y +   C EAV +F+EM ++   
Sbjct: 121 NTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSG-I 179

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
            PNE ++  +L+AC+ +     G+ +H  +  +  L +     NA+++MY K G++  A+
Sbjct: 180 MPNEFSISIILNACAGLQEGDLGRKIHGLM-LKMGLDLDQFSANALVDMYSKAGEIEGAV 238

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
            VF  +A+ D +SW+ +I+G  ++ C   AL L   M  +   P+  T  + + AC+  G
Sbjct: 239 AVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMG 298

Query: 327 LVDQG------LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 380
             + G      LI   A S ++  V        +VDMY +  ++++A      MP + + 
Sbjct: 299 FKELGRQLHSSLIKMDAHSDLFAAVG-------LVDMYSKCEMMDDARRAYDSMP-KKDI 350

Query: 381 SVWGALLNA 389
             W AL++ 
Sbjct: 351 IAWNALISG 359



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 208/409 (50%), Gaps = 17/409 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N ++ +  L AC+         +IH  +++ G   D F  N+L+  Y    +I  A  +F
Sbjct: 182 NEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVF 241

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHK------EAIDMFCGIDVKPNANTLVSVLSACSSLV 122
             +  PDVVSW  II+G   C  H         +D   G   +PN  TL S L AC+++ 
Sbjct: 242 QDIAHPDVVSWNAIIAG---CVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMG 298

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
             +LG+ +H+  ++    +++     ++D Y +C  +      +  MPK+++++W  +I 
Sbjct: 299 FKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALIS 358

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
           GY++ G   +AVS+F +M  +++ + N+ TL  VL + +S+ A+   K +H+ IS +  +
Sbjct: 359 GYSQCGDHLDAVSLFSKM-FSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHT-ISIKSGI 416

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
                V N++++ Y KC  +  A ++F    ++D ++++++I+  +  G G +AL+L+  
Sbjct: 417 YSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQ 476

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
           M    + PD     +L++AC++    +QG  L    +  +  +  +     +V+MY + G
Sbjct: 477 MQDADIKPDPFICSSLLNACANLSAYEQGKQL-HVHAIKFGFMCDIFASNSLVNMYAKCG 535

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDRIRQDLV 407
            +E+A+    E+P     S W A++     H + +    +F+++ +D V
Sbjct: 536 SIEDADRAFSEIPNRGIVS-WSAMIGGYAQHGHGKEALRLFNQMLRDGV 583



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 154/288 (53%), Gaps = 5/288 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M S    +N  T +  LK+ +     +   +IH   I+ G   D ++ NSLL  Y     
Sbjct: 376 MFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNH 435

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           I  A +IF    + D+V++T++I+  S+ G  +EA+ ++  +   D+KP+     S+L+A
Sbjct: 436 IDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNA 495

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C++L +++ GK +H H+++     +I   N++++ Y +CGS+      F ++P R +VSW
Sbjct: 496 CANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSW 555

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
           + MIGGYA+ G  KEA+ +F +M +     PN  TLV+VL AC+    ++ GK     + 
Sbjct: 556 SAMIGGYAQHGHGKEALRLFNQMLRDG-VPPNHITLVSVLCACNHAGLVNEGKQYFEKME 614

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DKISWSTVI 284
             + +  +      +I++  + G +  A+++ N + ++ D   W  ++
Sbjct: 615 VMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALL 662



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 146/310 (47%), Gaps = 10/310 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +TF   LKACS+        ++H   +  G   D F+ N+L+  Y     +  + ++F
Sbjct: 81  NEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLF 140

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
             +V  +VVSW  + S   +     EA+ +F  +    + PN  ++  +L+AC+ L    
Sbjct: 141 GGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGD 200

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG+ IH   L+   + +    NA++D Y + G +     +F  +   +VVSW  +I G  
Sbjct: 201 LGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCV 260

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
                  A+ +  EM K     PN  TL + L AC+++     G+ +HS +  + D    
Sbjct: 261 LHDCNDLALMLLDEM-KGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSL-IKMDAHSD 318

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
                 +++MY KC  +  A + ++ +  KD I+W+ +ISG +  G    A+ LFS M  
Sbjct: 319 LFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKM-- 376

Query: 306 NAVFPDDVTF 315
              F +D+ F
Sbjct: 377 ---FSEDIDF 383


>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Brachypodium distachyon]
          Length = 552

 Score =  281 bits (718), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 169/505 (33%), Positives = 270/505 (53%), Gaps = 54/505 (10%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALE-IHAHVIEYGHLHDIFIQNSLLHFYVTVK 59
           ML+  +  + YTF   LKA + A       + +HAHV+++G   +  + +SL+  Y    
Sbjct: 9   MLARGARPDAYTFPPLLKAVTAAAERGAVGDAVHAHVVKFGMELNAHVASSLVLMYAARG 68

Query: 60  DIFSAHQIFNSVVFP-----DVVSWTTIISG--------LSKCGFHKEAIDMFCGIDVKP 106
           D   A  + ++  +P       V W  +ISG        LS C F    +DM     V P
Sbjct: 69  DGAVARTLLDA--WPARGGDTPVVWNALISGHRRSRQFRLSCCSF----VDM-VRTGVVP 121

Query: 107 NANTLVSVLSACSSLVSHKLGKAIH-----AHSLRNLNENNIILD--------------- 146
              T ++VLSAC       LG  +H     +  L +L   N ++D               
Sbjct: 122 TPVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPDLKVGNALIDMYAECSEMDAAWELF 181

Query: 147 -----------NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVS 195
                       +++  ++R G +     LF  MP+R+ VSWT MI GY + G  +EA+ 
Sbjct: 182 EGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALE 241

Query: 196 VFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINM 255
           +F+EM+ +K    +E T+V+V++AC+ + AL  G++   Y+S R+ + +   VGNA+++M
Sbjct: 242 MFREMQFSK-VRADEFTMVSVVTACAQLGALETGEWARIYMS-RHGIKMDTFVGNALVDM 299

Query: 256 YVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTF 315
           Y KCG +  A+ VF  +  +DK +W+ VI GLA+NG G +A+ +F  M+     PD+VTF
Sbjct: 300 YSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEAPDEVTF 359

Query: 316 IALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP 375
           I +++AC+H GLVD+G   F +M+  Y I P + H+ C++D+ GRAG L+EA   I  MP
Sbjct: 360 IGVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKLKEALETIGNMP 419

Query: 376 IEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNK 435
           +    ++WG LL ACR+H N E+     + L+     +   + L+SN +A ++RWED  +
Sbjct: 420 MRPNSAIWGTLLAACRVHGNSEIGQLAAEHLLELDTENGMVYILLSNLYAKSNRWEDVRR 479

Query: 436 IRDEIRRMGLKKKTGCSWIEVNPSI 460
           +R  I   G+KK+ GCS IE+N +I
Sbjct: 480 LRQVIMEKGIKKEPGCSLIEMNGTI 504


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  281 bits (718), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 146/439 (33%), Positives = 264/439 (60%), Gaps = 14/439 (3%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           ++HAH+I  G      +   L+    T   I  A ++F +V  PD   + +++   SK G
Sbjct: 109 QVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFG 168

Query: 91  FHKEAI-----DMFCGIDVKPNAN-TLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
           F  + +      +F G    P +N T  SV+ AC+ L + +LGK IH+H +     +++ 
Sbjct: 169 FSIDTVLFYRRMLFSG---APQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMY 225

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           +  A++  Y +   +     +F  MP+R +++W ++I GY + G  +E++ +F  M ++ 
Sbjct: 226 VQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESG 285

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVG 263
             +P+ AT+V++LS+CS + AL FG ++H Y     +DL+V  ++G ++INMY +CG+V 
Sbjct: 286 -FQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNV--VLGTSLINMYTRCGNVS 342

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
            A +VF+ +  ++ ++W+ +ISG  M+G GRQA++LF+ M      P+++TF+A++SAC+
Sbjct: 343 KAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACA 402

Query: 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIRE-MPIEAEWSV 382
           H GL+D G  +F +M   Y +VP ++H  C+VDM+GRAGLL +A  FI++ +P E   +V
Sbjct: 403 HSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAV 462

Query: 383 WGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442
           W ++L ACR+HRN ++  ++ + +++ +  + G + ++SN +A A R +    +R+ + R
Sbjct: 463 WTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTR 522

Query: 443 MGLKKKTGCSWIEVNPSIF 461
             LKK+ G S IE+N   +
Sbjct: 523 RRLKKQVGYSTIEINRKTY 541



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 161/295 (54%), Gaps = 6/295 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML   +  ++YTFT  +KAC+     +   EIH+HV+  G+  D+++Q +L+  Y    D
Sbjct: 180 MLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASD 239

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           +  A ++F+++    +++W ++ISG  + G  +E+I +F  +     +P++ T+VS+LS+
Sbjct: 240 MKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSS 299

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           CS L +   G  +H ++  N  + N++L  ++++ Y RCG+++    +F  M +RNVV+W
Sbjct: 300 CSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTW 359

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
           T MI GY   G+ ++A+ +F EM +     PN  T V VLSAC+    +  G+ V S + 
Sbjct: 360 TAMISGYGMHGYGRQAMELFTEM-RAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMK 418

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD--KISWSTVISGLAMN 290
             Y L         +++M+ + G +  A Q       K+     W++++    M+
Sbjct: 419 EAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMH 473


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  280 bits (717), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 164/451 (36%), Positives = 249/451 (55%), Gaps = 8/451 (1%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +T    LKACS     +    +H  +   G   D+F+QN L+  Y     +  A  +F  
Sbjct: 170 FTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEG 229

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLG 127
           +   ++VSWT++ISG  + G   EA+ +F  +   +VKP+   LVSVL A + +   + G
Sbjct: 230 LDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQG 289

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           K+IH   ++   E    L  ++   Y +CG +      F +M   NV+ W  MI GYA+ 
Sbjct: 290 KSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKN 349

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS-TRYDLSVSN 246
           G+  EAV +FQEM  +K    +  T+ + + AC+ + +L   K++  YI+ T Y   V  
Sbjct: 350 GYTNEAVGLFQEM-ISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDV-- 406

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            V  A+I+M+ KCG V +A +VF+    KD + WS +I G  ++G G+ A+ LF  M   
Sbjct: 407 FVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQA 466

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
            V P+DVTF+ L++AC+H GLV++G  LF +M   Y I  + QHYACVVD+ GR+G L E
Sbjct: 467 GVCPNDVTFVGLLTACNHSGLVEEGWELFHSMK-YYGIEARHQHYACVVDLLGRSGHLNE 525

Query: 367 AEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAG 426
           A  FI  MPIE   SVWGALL AC+I+R+  + +   + L +    + G +  +SN +A 
Sbjct: 526 AYDFITTMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYAS 585

Query: 427 ADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +  W+   K+R  +R  GL K  G S IE+N
Sbjct: 586 SRLWDSVAKVRILMREKGLSKDLGYSLIEIN 616



 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 190/381 (49%), Gaps = 11/381 (2%)

Query: 26  HQKAL-EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIIS 84
           H++ L +IHA ++  G +   F+    ++    + +I  A ++F+    P V  W  II 
Sbjct: 83  HKRHLNQIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIR 142

Query: 85  GLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNEN 141
           G S   F  +AI+M+  +    V P+  TL  VL ACS +   ++GK +H    R   E+
Sbjct: 143 GYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFES 202

Query: 142 NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME 201
           ++ + N ++  Y +CG +     +F  +  RN+VSWT+MI GY + G   EA+ +F +M 
Sbjct: 203 DVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQM- 261

Query: 202 KTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGD 261
           + +  +P+   LV+VL A + +  L  GK +H  +  +  L     +  ++  MY KCG 
Sbjct: 262 RQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCV-VKMGLEFEPDLLISLTAMYAKCGQ 320

Query: 262 VGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISA 321
           V +A   F+ +   + + W+ +ISG A NG   +A+ LF  MI   +  D +T  + I A
Sbjct: 321 VMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILA 380

Query: 322 CSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA-EAFIREMPIEAEW 380
           C+  G +D    +   ++   E    +     ++DM+ + G ++ A E F R +  + + 
Sbjct: 381 CAQVGSLDLAKWMGDYINKT-EYRNDVFVNTALIDMFAKCGSVDLAREVFDRTL--DKDV 437

Query: 381 SVWGALLNACRIH-RNDEMFD 400
            VW A++    +H R  +  D
Sbjct: 438 VVWSAMIVGYGLHGRGQDAID 458


>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
 gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
          Length = 680

 Score =  280 bits (717), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 155/455 (34%), Positives = 254/455 (55%), Gaps = 7/455 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  TF+  L             EIH   + +G   DIF+ N+L+  Y        A  +F
Sbjct: 209 NSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVF 268

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHK 125
           N +   ++VSW  +++  ++      A+D+   +      PN+ T  +VL AC+ +   +
Sbjct: 269 NQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFLR 328

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK IHA ++R  +  ++ + NA+ D Y +CG L     +F K+  R+ VS+  +I GY+
Sbjct: 329 PGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVF-KISLRDEVSYNILIIGYS 387

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +   C E++ +F EM   K  + +  + + V+SAC++++AL  GK VH  ++ R  L   
Sbjct: 388 QTTNCSESLRLFLEM-GIKGMKLDVVSYMGVISACANLAALKQGKEVHG-LAVRKHLHTH 445

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             + NA+++ Y+KCG + +A +VF  +  +D  SW+++I G  M G    A+ LF  M  
Sbjct: 446 LFIANALLDFYIKCGRIDLAGKVFRQIPSRDTASWNSMILGYGMLGELTIAINLFEAMKE 505

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
           + V  D V++IA++SACSHGGLV++G   F+ M  V  I P   HYAC+VD+ GRAGL+E
Sbjct: 506 DGVEYDSVSYIAVLSACSHGGLVEEGKKYFEHMQ-VQNIKPTQMHYACMVDLLGRAGLIE 564

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EA   I  +PIE + +VWGALL ACRIH   E+     + L   K    G ++++SN +A
Sbjct: 565 EAVKLIESLPIEPDANVWGALLGACRIHGYIELAHWAAEHLFKLKPQHSGYYSVLSNMYA 624

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            A +W++ N++R  ++  G KK  GCSW++++  +
Sbjct: 625 EAGKWDEANQVRKLMKSRGAKKNPGCSWVQIDNQV 659



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 111/365 (30%), Positives = 188/365 (51%), Gaps = 9/365 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +TF   LKAC+ +   QK  EIH  V + G   D+F+ N+LL FY     +    ++F
Sbjct: 6   DDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDVKRVF 65

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV----KPNANTLVSVLSACSSLVSH 124
           + ++  DVVSW ++I   S  GF+ EAI +FC +++    +PN  ++VSVL  C+ L   
Sbjct: 66  DEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAGLEDG 125

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
             G+ IH + ++   ++ + + NA++D Y +CG +     +F ++ +RN VSW  +I   
Sbjct: 126 VTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAIITSL 185

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           A     ++A+ +F+ M      +PN  T  ++L     +    FGK +H + S R+ L  
Sbjct: 186 AYLERNQDALEMFRLMIDGG-VKPNSVTFSSMLPVLVELKLFDFGKEIHGF-SLRFGLES 243

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
              V NA+I+MY K G    A  VFN +  K+ +SW+ +++  A N     A+ L   M 
Sbjct: 244 DIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQ 303

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
            +   P+ VTF  ++ AC+  G +  G  I  +A+ T   +   + +   + DMY + G 
Sbjct: 304 ADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSN--ALTDMYAKCGC 361

Query: 364 LEEAE 368
           L  A 
Sbjct: 362 LNLAR 366



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 120/418 (28%), Positives = 211/418 (50%), Gaps = 24/418 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  +    L  C+         +IH +V++ G    + + N+L+  Y     +  + ++F
Sbjct: 108 NMVSIVSVLPVCAGLEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVF 167

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-CGID--VKPNANTLVSVLSACSSLVSHK 125
           + +   + VSW  II+ L+    +++A++MF   ID  VKPN+ T  S+L     L    
Sbjct: 168 DEISERNGVSWNAIITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFD 227

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK IH  SLR   E++I + NA++D Y + G       +F ++ ++N+VSW  M+  +A
Sbjct: 228 FGKEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFA 287

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +      AV + ++M+   E  PN  T  NVL AC+ I  L  GK +H+  + R   SV 
Sbjct: 288 QNRLELAAVDLVRQMQADGEI-PNSVTFTNVLPACARIGFLRPGKEIHAR-AIRTGSSVD 345

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V NA+ +MY KCG + +A +VF  ++ +D++S++ +I G +      ++L+LF  M I
Sbjct: 346 LFVSNALTDMYAKCGCLNLARRVFK-ISLRDEVSYNILIIGYSQTTNCSESLRLFLEMGI 404

Query: 306 NAVFPDDVTFIALISACSHGGLVDQ-----GLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
             +  D V+++ +ISAC++   + Q     GL + K + T   I   +      +D Y +
Sbjct: 405 KGMKLDVVSYMGVISACANLAALKQGKEVHGLAVRKHLHTHLFIANAL------LDFYIK 458

Query: 361 AGLLEEAEAFIREMPIE--AEWS--VWG-ALLNACRIHRNDEMFDRIRQDLVNKKGVS 413
            G ++ A    R++P    A W+  + G  +L    I  N  +F+ +++D V    VS
Sbjct: 459 CGRIDLAGKVFRQIPSRDTASWNSMILGYGMLGELTIAIN--LFEAMKEDGVEYDSVS 514



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 144/262 (54%), Gaps = 4/262 (1%)

Query: 102 IDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLAS 161
           + V+ + +T   VL AC+  +S + G+ IH    +   ++++ + N +L FY  CG L  
Sbjct: 1   MGVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKD 60

Query: 162 CGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221
              +F +M +R+VVSW ++IG ++  GF  EA+ +F EM       PN  ++V+VL  C+
Sbjct: 61  VKRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCA 120

Query: 222 SISALSFGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
            +     G+ +H Y + T  D  V+  VGNA++++Y KCG V  + +VF+ ++ ++ +SW
Sbjct: 121 GLEDGVTGRQIHCYVVKTGLDSQVT--VGNALVDVYGKCGYVKDSRRVFDEISERNGVSW 178

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340
           + +I+ LA     + AL++F LMI   V P+ VTF +++       L D G  +    S 
Sbjct: 179 NAIITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEI-HGFSL 237

Query: 341 VYEIVPQMQHYACVVDMYGRAG 362
            + +   +     ++DMY ++G
Sbjct: 238 RFGLESDIFVANALIDMYAKSG 259


>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Glycine max]
          Length = 529

 Score =  280 bits (717), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 153/458 (33%), Positives = 259/458 (56%), Gaps = 44/458 (9%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           P+SY   +F+  +KAC+L         +H HV ++G    +F+Q +L+ FY T  D+  +
Sbjct: 74  PTSY---SFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDVGGS 130

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSH 124
            ++F+ +   DV +WTT+IS   + G    A  +F   D  P                  
Sbjct: 131 RRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLF---DEMP------------------ 169

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
                          E N+   NA++D Y + G+  S  +LF +MP R+++SWTTM+  Y
Sbjct: 170 ---------------EKNVATWNAMIDGYGKLGNAESAEFLFNQMPARDIISWTTMMNCY 214

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR-YDLS 243
           +     KE +++F ++   K   P+E T+  V+SAC+ + AL+ GK VH Y+  + +DL 
Sbjct: 215 SRNKRYKEVIALFHDV-IDKGMIPDEVTMTTVISACAHLGALALGKEVHLYLVLQGFDLD 273

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           V   +G+++I+MY KCG + +A+ VF  L  K+   W+ +I GLA +G   +AL++F  M
Sbjct: 274 V--YIGSSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIIDGLATHGYVEEALRMFGEM 331

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
               + P+ VTFI++++AC+H G +++G   F +M   Y I PQ++HY C+VD+  +AGL
Sbjct: 332 ERKRIRPNAVTFISILTACTHAGFIEEGRRWFMSMVQDYCIAPQVEHYGCMVDLLSKAGL 391

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           LE+A   IR M +E    +WGALLN C++H+N E+     Q+L+  +  + G ++L+ N 
Sbjct: 392 LEDALEMIRNMTVEPNSFIWGALLNGCKLHKNLEIAHIAVQNLMVLEPSNSGHYSLLVNM 451

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKK-TGCSWIEVNPSI 460
           +A  +RW +  KIR  ++ +G++K+  G SW+E+N ++
Sbjct: 452 YAEENRWNEVAKIRTTMKDLGVEKRCPGSSWVEINKTV 489


>gi|225432322|ref|XP_002276230.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Vitis vinifera]
          Length = 606

 Score =  280 bits (717), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 147/434 (33%), Positives = 252/434 (58%), Gaps = 6/434 (1%)

Query: 33  HAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFH 92
           H +V++ G L+D F  N L++ YV ++    A Q+F  +  P+V+S+T++++G  K G  
Sbjct: 50  HTNVLKSGFLNDTFTTNHLINSYVRIRRTNDASQLFEEMREPNVISFTSLMAGFIKVGRP 109

Query: 93  KEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAI 149
           K A+ +FC +    V PNA T  +V++ACS L   + G+ IH+H      + N+++ +++
Sbjct: 110 KSALLIFCKMLESWVLPNAFTFATVVNACSMLADLRTGQKIHSHVEMFGVQCNLVVCSSL 169

Query: 150 LDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN 209
           +D Y +C ++     +F  M  RNVVSWT+MI  Y +    + A+ +F+E      + PN
Sbjct: 170 IDMYGKCNNVDDARRVFDGMDYRNVVSWTSMITAYGQNALGECALQLFREFNGLPLSSPN 229

Query: 210 EATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF 269
              L +V++AC+S+  L  GK  H+ +  R   S +++V +A+++MY KCG +G + +VF
Sbjct: 230 HFMLASVINACASLGRLVSGKVAHAAVIRRGHES-NDVVASALVDMYAKCGCIGYSDKVF 288

Query: 270 NMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVD 329
             +     I ++++I G A  G G+ +L +F  M+   + P+DVTF+ ++ ACSH GLVD
Sbjct: 289 RRIPDPSVIPYTSMIVGAAKYGLGKFSLDIFKEMLDRRIKPNDVTFVGVLHACSHSGLVD 348

Query: 330 QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS--VWGALL 387
            GL    +M   + +VP  +HY CVVDM GR G L+EA    + + +E +    +WG LL
Sbjct: 349 DGLEYLHSMHKKHGVVPDTKHYTCVVDMLGRTGRLDEAHQLAKSIQVEPDQGALLWGTLL 408

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
           +A R++   ++     + L+         +  MSNT+A A +WE+ + IR E++  G+ K
Sbjct: 409 SASRLYGRVDIAVEASKWLIESNQQVAAAYVTMSNTYAMAGKWENVHSIRYEMKHYGVYK 468

Query: 448 KTGCSWIEVNPSIF 461
           + GCSW+E+  S +
Sbjct: 469 EPGCSWVEIRDSAY 482



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 154/291 (52%), Gaps = 10/291 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +TF   + ACS+    +   +IH+HV  +G   ++ + +SL+  Y    ++  A ++F
Sbjct: 127 NAFTFATVVNACSMLADLRTGQKIHSHVEMFGVQCNLVVCSSLIDMYGKCNNVDDARRVF 186

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLVSH 124
           + + + +VVSWT++I+   +    + A+ +F   +      PN   L SV++AC+SL   
Sbjct: 187 DGMDYRNVVSWTSMITAYGQNALGECALQLFREFNGLPLSSPNHFMLASVINACASLGRL 246

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
             GK  HA  +R  +E+N ++ +A++D Y +CG +     +F ++P  +V+ +T+MI G 
Sbjct: 247 VSGKVAHAAVIRRGHESNDVVASALVDMYAKCGCIGYSDKVFRRIPDPSVIPYTSMIVGA 306

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG-KYVHSYISTRYDLS 243
           A+ G  K ++ +F+EM   +  +PN+ T V VL ACS    +  G +Y+HS +  ++ + 
Sbjct: 307 AKYGLGKFSLDIFKEM-LDRRIKPNDVTFVGVLHACSHSGLVDDGLEYLHS-MHKKHGVV 364

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK---ISWSTVISGLAMNG 291
                   V++M  + G +  A Q+   +  +     + W T++S   + G
Sbjct: 365 PDTKHYTCVVDMLGRTGRLDEAHQLAKSIQVEPDQGALLWGTLLSASRLYG 415


>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 614

 Score =  280 bits (717), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 159/465 (34%), Positives = 260/465 (55%), Gaps = 14/465 (3%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+S   + +++TF     +C+       A   H+ + +     D    +SL+  Y     
Sbjct: 113 MMSLSLTPDNFTFPFFFLSCANLASLSHACAAHSLLFKLALHSDPHTAHSLITAYARCGL 172

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK----PNANTLVSVLS 116
           + SA ++F+ +   D VSW ++I+G +K G  +EA+++F  +  +    P+  +LVS+L 
Sbjct: 173 VASARKVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLG 232

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
           AC  L   +LG+ +    +      N  + +A++  Y +CG L S   +F  M  R+V++
Sbjct: 233 ACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVIT 292

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           W  +I GYA+ G   EA+ +F  M K      N+ TL  VLSAC++I AL  GK +  Y 
Sbjct: 293 WNAVISGYAQNGMADEAILLFHGM-KEDCVTANKITLTAVLSACATIGALDLGKQIDEYA 351

Query: 237 STR---YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG 293
           S R   +D+     V  A+I+MY K G +  A +VF  +  K++ SW+ +IS LA +G  
Sbjct: 352 SQRGFQHDI----FVATALIDMYAKSGSLDNAQRVFKDMPQKNEASWNAMISALAAHGKA 407

Query: 294 RQALQLFSLMIINA--VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY 351
           ++AL LF  M        P+D+TF+ L+SAC H GLVD+G  LF  MST++ +VP+++HY
Sbjct: 408 KEALSLFQHMSDEGGGARPNDITFVGLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHY 467

Query: 352 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKG 411
           +C+VD+  RAG L EA   IR+MP + +    GALL ACR  +N ++ +R+ + ++    
Sbjct: 468 SCMVDLLARAGHLYEAWDLIRKMPEKPDKVTLGALLGACRSKKNVDIGERVMRMILEVDP 527

Query: 412 VSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
            + G + + S  +A  + WED+ ++R  +R+ G+ K  GCSWIEV
Sbjct: 528 SNSGNYIISSKIYANLNMWEDSARMRLLMRQKGITKTPGCSWIEV 572


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  280 bits (717), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 165/459 (35%), Positives = 265/459 (57%), Gaps = 24/459 (5%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSL-LHFYVTVKDIFSAHQIFNSVVFP- 74
           L+AC+ A P  K  +IH H+++ G LH+    N L L  + ++  +  A     S +F  
Sbjct: 36  LQACN-ALP--KLTQIHTHILKLG-LHN----NPLVLTKFASISSLIHATDYAASFLFSA 87

Query: 75  -------DVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVS 123
                  D   + T+I   ++ G  K+      GI     + PN  T   VL AC+ L  
Sbjct: 88  EADTRLYDAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEV 147

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRC-GSLASCGYLFVKMPKRNVVSWTTMIG 182
             LG+ +H   ++   + +I + N ++  Y  C G + S   +F +MPK + V+W+ MIG
Sbjct: 148 LNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIG 207

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
           GYA  G   EAV++F+EM+   E  P+E T+V++LSAC+ + AL  GK++ +YI  R+++
Sbjct: 208 GYARVGRSTEAVALFREMQMA-EVCPDEITMVSMLSACTDLGALELGKWIEAYIE-RHEI 265

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
                V NA+I+M+ KCGD+  A+++F  +  K  +SW++VI G+AM+G G++A  LF  
Sbjct: 266 HKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFEE 325

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
           M  + V PDDV FI L+SACSH GLV++G   F +M   Y++VP+++HY C+VDMY R G
Sbjct: 326 MTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCRTG 385

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSN 422
           L++EA  F+R MPIE    +   L++ACR H   ++ ++I + L+  + +    + L+SN
Sbjct: 386 LVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLLMKHEPLHESNYVLLSN 445

Query: 423 TFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
            +A    WE   KIR+ +   G+KK  G + IE++  I+
Sbjct: 446 IYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIY 484


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  280 bits (717), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 159/456 (34%), Positives = 270/456 (59%), Gaps = 24/456 (5%)

Query: 27  QKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP--DVVSWTTIIS 84
           ++   +H  V++YG      + NS++H Y   KD+  A ++FN +     DVVSW ++IS
Sbjct: 182 RRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLIS 241

Query: 85  GLSKCGFHKEAIDMFCGI------DVKPNANTLVSVLSACSSLVSHKLGKAIHAH-SLRN 137
           G +  G  + A+  F  +       V+PN  T++++L +C+ L   +    +H + S R+
Sbjct: 242 GFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRH 301

Query: 138 ---LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFC-KEA 193
              L   ++++  A+LD + RCG+LA    +F  +  +NVV W+ MI GY E+G C +EA
Sbjct: 302 SSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGY-EQGSCPEEA 360

Query: 194 VSVFQEMEKTK-----EAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSNL 247
           + +F++M         E +PN  TLV+V++ACS + A      +H Y ++T  D      
Sbjct: 361 LRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDAR-- 418

Query: 248 VGNAVINMYVKCGDVGIAIQVFNML--AYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
           + +A+I+M  KCGD+    QVF+ +  + +  +SWS++I    ++G G++AL+LFS M  
Sbjct: 419 IASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRT 478

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
               P+++T+I+++SACSH GLV+QG   F +M   Y + P  +HYAC+VD+ GRAG L+
Sbjct: 479 GGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLD 538

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EA   I  MPI+A+ ++WG+LL AC +H N ++ + + + +++    SVG   L++N + 
Sbjct: 539 EAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYE 598

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
            A RW+D  ++R E+RR GL+K  G S+IE+   ++
Sbjct: 599 DAGRWDDVVRMRVELRRSGLRKIPGQSFIEIGNEVY 634



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 213/433 (49%), Gaps = 44/433 (10%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N++TF   LKAC+        L++HA++   G   D F   +L+  Y      + A Q+F
Sbjct: 51  NNFTFPALLKACAALRRLLPTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVF 110

Query: 69  NSVVFP--DVVSWTTIISGLSKCGFHKEAIDMF--------------CGIDVKPNANTLV 112
           + +     DVVSWT +IS  S  G   EA   F              CG+DV     +L 
Sbjct: 111 DEMPEGSVDVVSWTALISAYSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVV----SLG 166

Query: 113 SVLSACSSLVSH---KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKM 169
           +++SAC+        + G A+H   ++     +  L N+++  Y  C  +     +F  +
Sbjct: 167 ALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGI 226

Query: 170 P--KRNVVSWTTMIGGYAERGFCKEAVSVFQEM--EKTKEAEPNEATLVNVLSACSSISA 225
           P  +R+VVSW ++I G+   G  + A+  F++M  E T   EPN  T++ +L +C+ +  
Sbjct: 227 PIEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGC 286

Query: 226 LSFGKYVHSYISTRYD---LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWST 282
           +    +VH YIS+R+    ++   +V  A+++M+ +CG++ +A ++F+ +  K+ + WS 
Sbjct: 287 VETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSA 346

Query: 283 VISGLAMNGCGRQALQLFSLMIINA------VFPDDVTFIALISACSHGGLVDQGLILFK 336
           +I+G     C  +AL+LF  M++        V P+ VT +++I+ACS  G      ++ K
Sbjct: 347 MIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHK 406

Query: 337 -AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV-WGALLNACRIH- 393
            A++T  +   ++   + ++DM  + G +E       EM       V W +++ A  IH 
Sbjct: 407 YAVATGLDQDARIA--SALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHG 464

Query: 394 ---RNDEMFDRIR 403
              R  E+F  +R
Sbjct: 465 EGKRALELFSEMR 477



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 145/290 (50%), Gaps = 24/290 (8%)

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCG 163
           V  N  T  ++L AC++L        +HA+  R     +     A++D Y +CG      
Sbjct: 48  VPSNNFTFPALLKACAALRRLLPTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAA 107

Query: 164 YLFVKMPKR--NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221
            +F +MP+   +VVSWT +I  Y+  G   EA   F  M   +  + +E   V+V+S  +
Sbjct: 108 QVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGA 167

Query: 222 SISA---------LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 272
            +SA         L  G  VH  +  +Y   VS  +GN++++MY  C DVG A +VFN +
Sbjct: 168 LVSACAVGCGSNCLRRGSAVHGLV-VKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGI 226

Query: 273 A--YKDKISWSTVISGLAMNGCGRQALQLFSLMI---INAVFPDDVTFIALISACSHGGL 327
               +D +SW+++ISG  +NG   +AL+ F  M+    +AV P+ VT IAL+ +C+  G 
Sbjct: 227 PIEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGC 286

Query: 328 VDQGLILFKAMSTVYE---IVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
           V+    + + +S+ +    +   +     ++DM+ R G L    A  RE+
Sbjct: 287 VETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNL----ALAREI 332


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  280 bits (717), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 166/456 (36%), Positives = 254/456 (55%), Gaps = 25/456 (5%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           + F   L    L H      ++HAH++  G      + + ++ FY +  DI S+  +FN 
Sbjct: 77  FQFLTGLNMLKLGH------QVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNG 130

Query: 71  V----VFPDVV-SWTTIIS-GLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSH 124
           +     FP V+ S   ++S  + KC  H   + +    D+   A +L+ +   C  +  +
Sbjct: 131 IGDYFTFPFVLKSSVELLSVWMGKC-VHGLILRIGLQFDLY-VATSLIILYGKCGEI--N 186

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
             GK     ++R+++  N     A+L  Y + G + +   +F +MP RN+VSWTTMI GY
Sbjct: 187 DAGKVFDNMTIRDVSSWN-----ALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGY 241

Query: 185 AERGFCKEAVSVFQEMEKTKEA-EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           ++ G  ++A+S+F EM K      PN  T+++VL AC+ +S L  G+ +H  ++ R  L+
Sbjct: 242 SQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHE-LACRMGLN 300

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK--ISWSTVISGLAMNGCGRQALQLFS 301
            +  V  A+  MY KCG +  A   F+ L   +K  I+W+T+I+  A  G G QA+  F 
Sbjct: 301 SNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFR 360

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            MI   + PDD+TF  L+S CSH GLVD GL  F  MST Y I P+++HYACV D+ GRA
Sbjct: 361 EMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRA 420

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           G L EA   + EMP+ A  S+WG+LL ACR HRN EM +   + L   +  + G + L+S
Sbjct: 421 GRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLS 480

Query: 422 NTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           N +A A RW++ +K+R  ++  G KK  GCSWIE+N
Sbjct: 481 NMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEIN 516


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  280 bits (717), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 150/460 (32%), Positives = 255/460 (55%), Gaps = 7/460 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML   +S N +TF  A+K+C+         ++H HV + G L + F+Q SL+  Y     
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 61  IFSAHQIF--NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVL 115
           I +A ++F  N       V + +++SG +     K+ + +FC    + V+ N  T++ ++
Sbjct: 61  IDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLV 120

Query: 116 SACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVV 175
             C    +  LG  +H   ++   + +  + N +L  Y++ G +     LF +MP++ ++
Sbjct: 121 QPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLI 180

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           +W  MI GYA+ G     + +++EME +K   P+  TLV VLS+C+ + ALS GK V   
Sbjct: 181 TWNAMINGYAQNGLANNVLELYKEME-SKGFCPDPLTLVGVLSSCAHLGALSVGKEVERK 239

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
           +   +  S +  + NA++NMY +CG++  A  +F+ +  K  +SW+ +I G  M+G G  
Sbjct: 240 MEG-FGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEV 298

Query: 296 ALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVV 355
           A+ LF  MI   + PD   F++++SACSH GL ++GL  F  M   Y + P  +HY+C+V
Sbjct: 299 AVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMV 358

Query: 356 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVG 415
           D+ GRAG L EA   I  M + A+ ++WGALL AC+IHRN E+ +   + ++  +  + G
Sbjct: 359 DLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIELEPTNTG 418

Query: 416 TFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
            + L+SN +  A   E   ++R  +R+  LKK  GCS++E
Sbjct: 419 YYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYVE 458


>gi|226530385|ref|NP_001145846.1| CRR4 [Zea mays]
 gi|219884683|gb|ACL52716.1| unknown [Zea mays]
 gi|414878658|tpg|DAA55789.1| TPA: CRR4 [Zea mays]
          Length = 601

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 156/479 (32%), Positives = 263/479 (54%), Gaps = 38/479 (7%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           LK+C+L+    +  + H H +  G L D+F+Q +L+ FY    ++ SA   F  +   D 
Sbjct: 85  LKSCALSAASCQGTQTHCHALVRGMLGDVFVQTALVDFYAKNGNMDSAVMAFEEMPIKDP 144

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGIDVK------------------------------- 105
           +    +I+G S+ G  +EA  +F  +  K                               
Sbjct: 145 IPMNCLITGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLRE 204

Query: 106 ---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC 162
              PNA T+ +V S C+     + G+   A  +   +  N+I+  A+++ Y++C ++   
Sbjct: 205 GASPNAITITTVFSICAKTGDLETGRRAKAW-VSEEDLQNVIVHTALMEMYVKCRAIDEA 263

Query: 163 GYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS 222
              F +MP+R+VV+W+TMI GY+  G   E++ +F+ M+ T   +PNE TLV VLSAC+ 
Sbjct: 264 RREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATN-CKPNEVTLVGVLSACAQ 322

Query: 223 ISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWST 282
           + +   G+ + SYI ++  L +++ +G+A+I+MY KCG V  A  VF+ +  K  I+W++
Sbjct: 323 LGSDELGEQIGSYIESQ-TLPLTSYLGSALIDMYTKCGHVARARDVFHRMEQKVVIAWNS 381

Query: 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 342
           +I GLA+NG    A+ L+  M+ + V P+++TF+AL++AC+H GLVD+G+  F+ M    
Sbjct: 382 MIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLVDKGMAFFQEMKKNK 441

Query: 343 E-IVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDR 401
           +   PQ++H AC+VD+  ++G L EA  FI +M +E    +W  LL+ACR H + E+   
Sbjct: 442 QHASPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWTTLLSACRAHADVELAKL 501

Query: 402 IRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
               LV  +  S   + L+SN +A A  W D  +IRD +R   L+K +  SWIE++  +
Sbjct: 502 AAGKLVVLEPNSSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLSAYSWIELDGEV 560



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 170/365 (46%), Gaps = 41/365 (11%)

Query: 46  FIQNSLLHFYVTVKDIF-SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV 104
            ++   LH  ++    + +A  +F++V  P        +S LSK   H+E I+    +  
Sbjct: 12  LLKTQPLHALLSDASTYRAARHLFDAVPRPTAALCCAFVSVLSKLSLHQELIEAVSSLHR 71

Query: 105 KPNA---NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLAS 161
           +  A     +  VL +C+   +   G   H H+L      ++ +  A++DFY + G++ S
Sbjct: 72  RGGAIPSGCIPLVLKSCALSAASCQGTQTHCHALVRGMLGDVFVQTALVDFYAKNGNMDS 131

Query: 162 C--------------------GY-----------LFVKMPKRNVVSWTTMIGGYAERGFC 190
                                GY           LF  MP++   SW +MI  YA  G  
Sbjct: 132 AVMAFEEMPIKDPIPMNCLITGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEF 191

Query: 191 KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGN 250
           +EA+++F +M + + A PN  T+  V S C+    L  G+   +++S   DL  + +V  
Sbjct: 192 QEALTLFDQMLR-EGASPNAITITTVFSICAKTGDLETGRRAKAWVSEE-DLQ-NVIVHT 248

Query: 251 AVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP 310
           A++ MYVKC  +  A + F+ +  +D ++WST+I+G + NG   ++L+LF  M      P
Sbjct: 249 ALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKP 308

Query: 311 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY-ACVVDMYGRAGLLEEAEA 369
           ++VT + ++SAC+  G  + G  +   + +  + +P   +  + ++DMY + G +  A  
Sbjct: 309 NEVTLVGVLSACAQLGSDELGEQIGSYIES--QTLPLTSYLGSALIDMYTKCGHVARARD 366

Query: 370 FIREM 374
               M
Sbjct: 367 VFHRM 371


>gi|14587213|dbj|BAB61147.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|125570436|gb|EAZ11951.1| hypothetical protein OsJ_01824 [Oryza sativa Japonica Group]
          Length = 735

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 149/460 (32%), Positives = 258/460 (56%), Gaps = 5/460 (1%)

Query: 4   CPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFS 63
           CPS  + +  T  L A S+        ++H  +++ G L  + ++NSL+  Y     + +
Sbjct: 214 CPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGA 273

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSS 120
           A  +F S    + ++W+ +I+G ++ G    A+ MF  +      P   T V VL+A S 
Sbjct: 274 AFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSD 333

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           L +  +GK  H   ++   E  I + +A++D Y +CG +A     F ++ + ++V WT M
Sbjct: 334 LGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAM 393

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           + G+ + G  +EA++++  M+K +   P+++T+ + L AC+ I+AL  GK +H+ I  +Y
Sbjct: 394 VSGHVQNGEHEEALTLYARMDK-EGIIPSKSTIASGLRACAGIAALEPGKQLHTQI-VKY 451

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
            L +   VG+A+  MY KCG++   + VF  +  +D I+W+++ISG + NGCG  AL LF
Sbjct: 452 GLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLF 511

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
             M +    PD++TFI ++ ACSH GLVD+G   F  M+  Y + P++ HYAC+VD+  R
Sbjct: 512 EEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSR 571

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           AG+L+EA+ FI  + I+    +W  +L ACR  R+ ++     + L+         + L+
Sbjct: 572 AGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTGDSSAYILL 631

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           SN +A   +W D  ++R  +R  G+ K  GCSW+E+N  +
Sbjct: 632 SNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVELNSRV 671



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 117/452 (25%), Positives = 219/452 (48%), Gaps = 26/452 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD--IFSAHQ 66
           +H  F + L+  +    H +AL  HA  ++ G      + NSL++FY ++    + +A  
Sbjct: 13  SHTQFIELLRRRASCPRHGEAL--HAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFA 70

Query: 67  IFNSV--VFPDVVSWTTIISGLSKCGFHK--EAIDMFCGI----DVKPNANTLVSVLSAC 118
           +F+ +     DV SW ++++ LS    H+  +A+  F  +     V P+ ++  +  +A 
Sbjct: 71  VFDDIPPAARDVTSWNSLLNPLSG---HRPLDALSRFRSMLSSSTVLPSPHSFAAAFTAA 127

Query: 119 SSLVSHKLGKAIHAHSLRNLNE-NNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           +   S   G A HA + +  +  +N+ +  ++L+ Y + G ++    +F  MP+RN  SW
Sbjct: 128 ARAASAPAGTAAHALACKIPSAVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSW 187

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
           +TM+ GYA     +EA  +F+ M +   +E +E     VLSA S    L  G+ +H  I 
Sbjct: 188 STMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIV 247

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
               L   + V N+++ MY K G +G A  VF     ++ I+WS +I+G A NG    A+
Sbjct: 248 KDGLLDFVS-VENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAV 306

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY--ACVV 355
            +FS M      P + TF+ +++A S  G +  G    +A   + ++  ++Q Y  + +V
Sbjct: 307 SMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGK---QAHGLMVKLGFEVQIYVKSALV 363

Query: 356 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV--S 413
           DMY + G + +A+    ++  E +  +W A+++   +   +          ++K+G+  S
Sbjct: 364 DMYAKCGCIADAKEGFDQL-YEVDIVLWTAMVSG-HVQNGEHEEALTLYARMDKEGIIPS 421

Query: 414 VGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445
             T A      AG    E   ++  +I + GL
Sbjct: 422 KSTIASGLRACAGIAALEPGKQLHTQIVKYGL 453


>gi|195651407|gb|ACG45171.1| CRR4 [Zea mays]
          Length = 601

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 156/479 (32%), Positives = 268/479 (55%), Gaps = 38/479 (7%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFY---------------VTVKD- 60
           LK+C+L+    +  + H H +  G L D+F+Q +L+ FY               + +KD 
Sbjct: 85  LKSCALSAASCQGTQTHCHALVRGMLGDVFVQTALVDFYAKNGNMDSAVMAFEEMPIKDP 144

Query: 61  ---------------IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI--- 102
                          +  A ++F+S+      SW ++I+  +  G  +EA+ +F  +   
Sbjct: 145 IPMNCLIIGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLRE 204

Query: 103 DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC 162
              PNA T+ +V S C+     + G+   A  +   +  N+I+  A+++ Y++C ++   
Sbjct: 205 GASPNAITITTVFSICAKTGDLETGRRAKAW-VSEEDLQNVIVHTALMEMYVKCRAIDEA 263

Query: 163 GYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS 222
              F +MP+R+VV+W+TMI GY+  G   E++ +F+ M+ T   +PNE TLV VLSAC+ 
Sbjct: 264 RREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATN-CKPNEVTLVGVLSACAQ 322

Query: 223 ISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWST 282
           + +   G+ + SYI ++  L +++ +G+A+I+MY KCG V  A  VF+ +  K  I+W++
Sbjct: 323 LGSDELGEQIGSYIESQ-TLPLTSYLGSALIDMYTKCGHVARARDVFHRMEQKVVIAWNS 381

Query: 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 342
           +I GLA+NG    A+ L+  M+ + V P+++TF+AL++AC+H GLVD+G+  F+ M    
Sbjct: 382 MIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLVDKGMAFFQEMKKNK 441

Query: 343 E-IVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDR 401
           +   PQ++H AC+VD+  ++G L EA  FI +M +E    +W  LL+ACR H + E+   
Sbjct: 442 QHASPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWTTLLSACRAHADVELAKL 501

Query: 402 IRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
               LV  +  S   + L+SN +A A  W D  +IRD +R   L+K +  SWIE++  +
Sbjct: 502 AAGKLVVLEPNSSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLSAYSWIELDGEV 560



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 170/365 (46%), Gaps = 41/365 (11%)

Query: 46  FIQNSLLHFYVTVKDIF-SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV 104
            ++   LH  ++    + +A  +F++V  P        +S LSK   H+E I+    +  
Sbjct: 12  LLKTQPLHALLSDASTYRAARHLFDAVPRPTAALCCAFVSVLSKLSLHQELIEAVSSLHR 71

Query: 105 KPNA---NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLAS 161
           +  A     +  VL +C+   +   G   H H+L      ++ +  A++DFY + G++ S
Sbjct: 72  RGGAIPSGCIPLVLKSCALSAASCQGTQTHCHALVRGMLGDVFVQTALVDFYAKNGNMDS 131

Query: 162 C--------------------GY-----------LFVKMPKRNVVSWTTMIGGYAERGFC 190
                                GY           LF  MP++   SW +MI  YA  G  
Sbjct: 132 AVMAFEEMPIKDPIPMNCLIIGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEF 191

Query: 191 KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGN 250
           +EA+++F +M + + A PN  T+  V S C+    L  G+   +++S   DL  + +V  
Sbjct: 192 QEALTLFDQMLR-EGASPNAITITTVFSICAKTGDLETGRRAKAWVSEE-DLQ-NVIVHT 248

Query: 251 AVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP 310
           A++ MYVKC  +  A + F+ +  +D ++WST+I+G + NG   ++L+LF  M      P
Sbjct: 249 ALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKP 308

Query: 311 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY-ACVVDMYGRAGLLEEAEA 369
           ++VT + ++SAC+  G  + G  +   + +  + +P   +  + ++DMY + G +  A  
Sbjct: 309 NEVTLVGVLSACAQLGSDELGEQIGSYIES--QTLPLTSYLGSALIDMYTKCGHVARARD 366

Query: 370 FIREM 374
               M
Sbjct: 367 VFHRM 371


>gi|297596789|ref|NP_001043072.2| Os01g0374200 [Oryza sativa Japonica Group]
 gi|255673241|dbj|BAF04986.2| Os01g0374200 [Oryza sativa Japonica Group]
          Length = 629

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 149/460 (32%), Positives = 258/460 (56%), Gaps = 5/460 (1%)

Query: 4   CPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFS 63
           CPS  + +  T  L A S+        ++H  +++ G L  + ++NSL+  Y     + +
Sbjct: 108 CPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGA 167

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSS 120
           A  +F S    + ++W+ +I+G ++ G    A+ MF  +      P   T V VL+A S 
Sbjct: 168 AFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSD 227

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           L +  +GK  H   ++   E  I + +A++D Y +CG +A     F ++ + ++V WT M
Sbjct: 228 LGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAM 287

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           + G+ + G  +EA++++  M+K +   P+++T+ + L AC+ I+AL  GK +H+ I  +Y
Sbjct: 288 VSGHVQNGEHEEALTLYARMDK-EGIIPSKSTIASGLRACAGIAALEPGKQLHTQI-VKY 345

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
            L +   VG+A+  MY KCG++   + VF  +  +D I+W+++ISG + NGCG  AL LF
Sbjct: 346 GLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLF 405

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
             M +    PD++TFI ++ ACSH GLVD+G   F  M+  Y + P++ HYAC+VD+  R
Sbjct: 406 EEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSR 465

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           AG+L+EA+ FI  + I+    +W  +L ACR  R+ ++     + L+         + L+
Sbjct: 466 AGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTGDSSAYILL 525

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           SN +A   +W D  ++R  +R  G+ K  GCSW+E+N  +
Sbjct: 526 SNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVELNSRV 565



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 171/336 (50%), Gaps = 7/336 (2%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-CGI 102
           ++++  SLL+ Y  +  +  A ++F+ +   +  SW+T+++G +     +EA D+F   +
Sbjct: 46  NVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLML 105

Query: 103 DVKPNANT---LVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSL 159
           +  P+  +     +VLSA S  +   +G+ +H   +++   + + ++N+++  Y + G +
Sbjct: 106 EECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCM 165

Query: 160 ASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
            +  ++F    +RN ++W+ MI GYA+ G    AVS+F +M       P E T V VL+A
Sbjct: 166 GAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAG-FTPTEFTFVGVLNA 224

Query: 220 CSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS 279
            S + AL+ GK  H  +  +    V   V +A+++MY KCG +  A + F+ L   D + 
Sbjct: 225 SSDLGALAVGKQAHGLM-VKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVL 283

Query: 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMS 339
           W+ ++SG   NG   +AL L++ M    + P   T  + + AC+    ++ G  L   + 
Sbjct: 284 WTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQI- 342

Query: 340 TVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP 375
             Y +       + +  MY + G LE+  +  R +P
Sbjct: 343 VKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIP 378



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 152/309 (49%), Gaps = 10/309 (3%)

Query: 141 NNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEM 200
           +N+ +  ++L+ Y + G ++    +F  MP+RN  SW+TM+ GYA     +EA  +F+ M
Sbjct: 45  SNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLM 104

Query: 201 EKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCG 260
            +   +E +E     VLSA S    L  G+ +H  I     L   + V N+++ MY K G
Sbjct: 105 LEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVS-VENSLVTMYAKAG 163

Query: 261 DVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALIS 320
            +G A  VF     ++ I+WS +I+G A NG    A+ +FS M      P + TF+ +++
Sbjct: 164 CMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLN 223

Query: 321 ACSHGGLVDQGLILFKAMSTVYEIVPQMQHY--ACVVDMYGRAGLLEEAEAFIREMPIEA 378
           A S  G +  G    +A   + ++  ++Q Y  + +VDMY + G + +A+    ++  E 
Sbjct: 224 ASSDLGALAVGK---QAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQL-YEV 279

Query: 379 EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV--SVGTFALMSNTFAGADRWEDTNKI 436
           +  +W A+++   +   +          ++K+G+  S  T A      AG    E   ++
Sbjct: 280 DIVLWTAMVSG-HVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQL 338

Query: 437 RDEIRRMGL 445
             +I + GL
Sbjct: 339 HTQIVKYGL 347


>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
          Length = 602

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 167/486 (34%), Positives = 265/486 (54%), Gaps = 36/486 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +TF   LKA       ++  E+HA V+  G     F+  +LL FYV    +    Q+F
Sbjct: 90  NGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVF 149

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLVSHK 125
           + +  P +V WT II       F ++A+++F     + + P+   + +V+SAC  L    
Sbjct: 150 DEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAVSTVVSACGLLGDLG 209

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC----------------------- 162
           + KA+H    ++  E +  + + ++  Y  CGSL                          
Sbjct: 210 VAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSV 269

Query: 163 --------GYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
                     LF  MP R+VVSW +MIGG+A  G  +EA++ F EME +    PN  TL+
Sbjct: 270 EHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSG-VSPNALTLL 328

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
           + LSAC+S  AL  G ++H+Y+  + D++    + +++I+MY KCGD+  A+Q+F     
Sbjct: 329 STLSACASHGALDTGAWIHAYVD-KNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTR 387

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           +D  +W++++ GLAM+G G +AL  FS M    V PDDVT + ++SAC+H GL+DQG   
Sbjct: 388 RDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWY 447

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F++M  V+ +VP+++HY  +VD+ GR G L+EA   I  MP+EA   +WGA L+ACR+H 
Sbjct: 448 FQSMEKVFGLVPKVEHYGXMVDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSACRVHN 507

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           N E+ +   + L+           ++SN +A   +W+ +  +R EI++ GLKK  GCS I
Sbjct: 508 NVELGEVAARRLLGLXPRDPWARVMLSNMYAEEAKWDRSMGLRKEIKKKGLKKSPGCSSI 567

Query: 455 EVNPSI 460
           EVN S+
Sbjct: 568 EVNGSV 573



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 90/397 (22%), Positives = 168/397 (42%), Gaps = 56/397 (14%)

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCG 163
           ++PN +T + +L A  S    K G+ +HA  +R     +  +  A+L FY+ CG +    
Sbjct: 87  LRPNGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGR 146

Query: 164 YLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI 223
            +F +M +  +V WT +I  Y    F ++A+ +F+ M +     P+   +  V+SAC  +
Sbjct: 147 QVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVG-LTPDMVAVSTVVSACGLL 205

Query: 224 SALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI----------------- 266
             L   K +H +I  +  + V   V + +I+ Y +CG +  A                  
Sbjct: 206 GDLGVAKAMHCFIE-KSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTM 264

Query: 267 --------------QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD 312
                         Q+F  +  +D +SW+++I G A  G  ++AL  F  M  + V P+ 
Sbjct: 265 IHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNA 324

Query: 313 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIR 372
           +T ++ +SAC+  G +D G  +  A     ++       + ++DMY + G +++A     
Sbjct: 325 LTLLSTLSACASHGALDTGAWI-HAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFE 383

Query: 373 EMPIEAEWSVWGALLNACRIHRNDE----MFDRIRQDLVNKKGVS-VGT----------- 416
           E     +   W +++    +H   E     F ++++  V    V+ VG            
Sbjct: 384 E-STRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLD 442

Query: 417 -----FALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
                F  M   F    + E    + D + RMG  K+
Sbjct: 443 QGWWYFQSMEKVFGLVPKVEHYGXMVDLLGRMGCLKE 479


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 156/465 (33%), Positives = 256/465 (55%), Gaps = 40/465 (8%)

Query: 30  LEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
           L+IHA +  +G  H   +   L   Y ++  +  +  +F     P V  WT II G +  
Sbjct: 47  LQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALR 106

Query: 90  GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
           G H++A++ +  +    V+PNA T  S+L  C      + GKA+H+ +++   ++++ + 
Sbjct: 107 GLHEQALNFYAQMLTQGVEPNAFTFSSILKLCPI----EPGKALHSQAVKLGFDSDLYVR 162

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVS------------------------------ 176
             +LD Y R G + S   LF  MP++++VS                              
Sbjct: 163 TGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGV 222

Query: 177 -WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
            W  MI GY + G   EA+ +F+ M K K A+PNE T+++VLSAC  + AL  G++VHSY
Sbjct: 223 CWNVMIDGYTQNGMPNEALVLFRRMLKAK-AKPNEVTVLSVLSACGQLGALESGRWVHSY 281

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
           I     +  +  VG A+++MY KCG +  A  VF+ +  KD ++W+++I G AM+G  ++
Sbjct: 282 IENN-GIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQE 340

Query: 296 ALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVV 355
           ALQLF  M    + P ++TFI ++SAC H G V +G  +F  M   Y I P+++HY C+V
Sbjct: 341 ALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMV 400

Query: 356 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVG 415
           ++ GRAG +E+A   ++ M IE +  +WG LL ACR+H    + ++I + LV++   + G
Sbjct: 401 NLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSG 460

Query: 416 TFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           T+ L+SN +A    W+   ++R  ++  G+KK+ GCS IEVN  +
Sbjct: 461 TYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKV 505



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 154/326 (47%), Gaps = 40/326 (12%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML+     N +TF+  LK C    P +    +H+  ++ G   D++++  LL  Y    D
Sbjct: 119 MLTQGVEPNAFTFSSILKLC----PIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGD 174

Query: 61  IFSAHQIFNS--------------------------VVFP-----DVVSWTTIISGLSKC 89
           + SA Q+F++                          V+F      D V W  +I G ++ 
Sbjct: 175 VVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQN 234

Query: 90  GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
           G   EA+ +F  +     KPN  T++SVLSAC  L + + G+ +H++   N  + N+ + 
Sbjct: 235 GMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVG 294

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
            A++D Y +CGSL     +F K+  ++VV+W +MI GYA  GF +EA+ +F+ M +    
Sbjct: 295 TALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMG-L 353

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
            P   T + +LSAC     ++ G  + + +   Y +         ++N+  + G V  A 
Sbjct: 354 HPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAY 413

Query: 267 Q-VFNMLAYKDKISWSTVISGLAMNG 291
           + V NM    D + W T++    ++G
Sbjct: 414 ELVKNMNIEPDPVLWGTLLGACRLHG 439


>gi|125525985|gb|EAY74099.1| hypothetical protein OsI_01984 [Oryza sativa Indica Group]
          Length = 735

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 149/460 (32%), Positives = 258/460 (56%), Gaps = 5/460 (1%)

Query: 4   CPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFS 63
           CPS  + +  T  L A S+        ++H  +++ G L  + ++NSL+  Y     + +
Sbjct: 214 CPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGA 273

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSS 120
           A  +F S    + ++W+ +I+G ++ G    A+ MF  +      P   T V VL+A S 
Sbjct: 274 AFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSD 333

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           L +  +GK  H   ++   E  I + +A++D Y +CG +A     F ++ + ++V WT M
Sbjct: 334 LGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAM 393

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           + G+ + G  +EA++++  M+K +   P+++T+ + L AC+ I+AL  GK +H+ I  +Y
Sbjct: 394 VSGHVQNGEHEEALTLYARMDK-EGIIPSKSTIASGLRACAGIAALEPGKQLHTQI-VKY 451

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
            L +   VG+A+  MY KCG++   + VF  +  +D I+W+++ISG + NGCG  AL LF
Sbjct: 452 GLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLF 511

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
             M +    PD++TFI ++ ACSH GLVD+G   F  M+  Y + P++ HYAC+VD+  R
Sbjct: 512 EEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSR 571

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           AG+L+EA+ FI  + I+    +W  +L ACR  R+ ++     + L+         + L+
Sbjct: 572 AGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTRDSSAYILL 631

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           SN +A   +W D  ++R  +R  G+ K  GCSW+E+N  +
Sbjct: 632 SNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVELNSRV 671



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 199/394 (50%), Gaps = 23/394 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD--IFSAHQ 66
           +H  F + L+  +    H +AL  HA  ++ G      + NSL++FY ++    + +A  
Sbjct: 13  SHTQFIELLRRRASCPRHGEAL--HAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFA 70

Query: 67  IFNSV--VFPDVVSWTTIISGLSKCGFHK--EAIDMFCGI----DVKPNANTLVSVLSAC 118
           +F+ +     DV SW ++++ LS+   H+  +A+  F  +     V P+ ++  +  +A 
Sbjct: 71  VFDDIPPAARDVASWNSLLNPLSR---HRPLDALSRFRSMLSSSTVLPSPHSFAAAFTAA 127

Query: 119 SSLVSHKLGKAIHAHSLRNLNE-NNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           +   S   G A HA + +  +  +N+ +  ++L+ Y + G ++    +F  MP+RN  SW
Sbjct: 128 ARAASAPAGTAAHALACKIPSAVSNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSW 187

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
           +TM+ GYA     +EA  +F+ M +   +E +E     VLSA S    L  G+ +H  I 
Sbjct: 188 STMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIV 247

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
               L   + V N+++ MY K G +G A  VF     ++ I+WS +I+G A NG    A+
Sbjct: 248 KDGLLDFVS-VENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAV 306

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY--ACVV 355
            +FS M      P + TF+ +++A S  G +  G    +A   + ++  ++Q Y  + +V
Sbjct: 307 SMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGK---QAHGLMVKLGFEVQIYVKSALV 363

Query: 356 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           DMY + G + +A+    ++  E +  +W A+++ 
Sbjct: 364 DMYAKCGCIADAKEGFDQL-YEVDIVLWTAMVSG 396


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 159/456 (34%), Positives = 269/456 (58%), Gaps = 24/456 (5%)

Query: 27  QKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP--DVVSWTTIIS 84
           ++   +H  V++YG      + NS++H Y   KD+  A ++FN +     DVVSW ++IS
Sbjct: 182 RRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLIS 241

Query: 85  GLSKCGFHKEAIDMFCGI------DVKPNANTLVSVLSACSSLVSHKLGKAIHAH-SLRN 137
           G    G  + A+  F  +       V+PN  T++++L +C+ L   +    +H + S R+
Sbjct: 242 GFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRH 301

Query: 138 ---LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFC-KEA 193
              L   ++++  A+LD + RCG+LA    +F  +  +NVV W+ MI GY E+G C +EA
Sbjct: 302 SSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGY-EQGSCPEEA 360

Query: 194 VSVFQEMEKTK-----EAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSNL 247
           + +F++M         E +PN  TLV+V++ACS + A      +H Y ++T  D      
Sbjct: 361 LRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDAR-- 418

Query: 248 VGNAVINMYVKCGDVGIAIQVFNML--AYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
           + +A+I+M  KCGD+    QVF+ +  + +  +SWS++I    ++G G++AL+LFS M  
Sbjct: 419 IASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRT 478

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
               P+++T+I+++SACSH GLV+QG   F +M   Y + P  +HYAC+VD+ GRAG L+
Sbjct: 479 GGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLD 538

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EA   I  MPI+A+ ++WG+LL AC +H N ++ + + + +++    SVG   L++N + 
Sbjct: 539 EAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYE 598

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
            A RW+D  ++R E+RR GL+K  G S+IE+   ++
Sbjct: 599 DAGRWDDVVRMRVELRRSGLRKIPGQSFIEIGNEVY 634



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 213/433 (49%), Gaps = 44/433 (10%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N++TF   LKAC+        L++HA++   G   D F   +L+  Y      + A Q+F
Sbjct: 51  NNFTFPALLKACAALRRLLPTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVF 110

Query: 69  NSVVFP--DVVSWTTIISGLSKCGFHKEAIDMF--------------CGIDVKPNANTLV 112
           + +     DVVSWT +IS  S  G   EA   F              CG+DV     +L 
Sbjct: 111 DEMPEGSVDVVSWTALISAYSSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVV----SLG 166

Query: 113 SVLSACSSLVSH---KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKM 169
           +++SAC+        + G A+H   ++     +  L N+++  Y  C  +     +F  +
Sbjct: 167 ALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGI 226

Query: 170 P--KRNVVSWTTMIGGYAERGFCKEAVSVFQEM--EKTKEAEPNEATLVNVLSACSSISA 225
           P  +R+VVSW ++I G+   G  + A+  F++M  E T   EPN  T++ +L +C+ +  
Sbjct: 227 PIEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGC 286

Query: 226 LSFGKYVHSYISTRYD---LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWST 282
           +    +VH YIS+R+    ++   +V  A+++M+ +CG++ +A ++F+ +  K+ + WS 
Sbjct: 287 VETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSA 346

Query: 283 VISGLAMNGCGRQALQLFSLMIINA------VFPDDVTFIALISACSHGGLVDQGLILFK 336
           +I+G     C  +AL+LF  M++        V P+ VT +++I+ACS  G      ++ K
Sbjct: 347 MIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHK 406

Query: 337 -AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV-WGALLNACRIH- 393
            A++T  +   ++   + ++DM  + G +E       EM       V W +++ A  IH 
Sbjct: 407 YAVATGLDQDARIA--SALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHG 464

Query: 394 ---RNDEMFDRIR 403
              R  E+F  +R
Sbjct: 465 EGKRALELFSEMR 477



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 145/290 (50%), Gaps = 24/290 (8%)

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCG 163
           V  N  T  ++L AC++L        +HA+  R     +     A++D Y +CG      
Sbjct: 48  VPSNNFTFPALLKACAALRRLLPTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAA 107

Query: 164 YLFVKMPKR--NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221
            +F +MP+   +VVSWT +I  Y+  G   EA   F  M   +  + +E   V+V+S  +
Sbjct: 108 QVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGA 167

Query: 222 SISA---------LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 272
            +SA         L  G  VH  +  +Y   VS  +GN++++MY  C DVG A +VFN +
Sbjct: 168 LVSACAVGCGSNCLRRGSAVHGLV-VKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGI 226

Query: 273 A--YKDKISWSTVISGLAMNGCGRQALQLFSLMI---INAVFPDDVTFIALISACSHGGL 327
               +D +SW+++ISG  +NG   +AL+ F  M+    +AV P+ VT IAL+ +C+  G 
Sbjct: 227 PIEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGC 286

Query: 328 VDQGLILFKAMSTVYE---IVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
           V+    + + +S+ +    +   +     ++DM+ R G L    A  RE+
Sbjct: 287 VETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNL----ALAREI 332


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 148/454 (32%), Positives = 264/454 (58%), Gaps = 9/454 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +T+   L+ C+         +IH+  ++ G   D+++   L+  Y     +  A ++ 
Sbjct: 344 NQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVL 403

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLVS 123
             +   DVVSWT++I+G  +    K+A+  F     CGI   P+   L S +S C+ + +
Sbjct: 404 EMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGI--WPDNIGLASAISGCAGINA 461

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            + G  IHA    +    ++ + NA+++ Y RCG +      F ++  ++ ++W  ++ G
Sbjct: 462 MRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSG 521

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           +A+ G  +EA+ VF  M+++   + N  T V+ LSA ++++ +  GK +H+ +  +   S
Sbjct: 522 FAQSGLHEEALKVFMRMDQSG-VKHNVFTFVSALSASANLAEIKQGKQIHARV-IKTGHS 579

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
               VGNA+I++Y KCG    A   F+ ++ ++++SW+T+I+  + +G G +AL LF  M
Sbjct: 580 FETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQM 639

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
               + P+DVTFI +++ACSH GLV++GL  FK+MS  Y I P+  HYACV+D++GRAG 
Sbjct: 640 KKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQ 699

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           L+ A+ FI EMPI A+  VW  LL+AC++H+N E+ +   + L+  +     ++ L+SN 
Sbjct: 700 LDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNA 759

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +A  ++W + +++R  +R  G++K+ G SWIEV 
Sbjct: 760 YAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVK 793



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 223/421 (52%), Gaps = 16/421 (3%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T +  L AC+     QK  ++H+++ + G   D  ++ SLL  YV   D+ +A  IFNS 
Sbjct: 246 TISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSS 305

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
              +VV W  ++    +     ++ ++FC +    ++PN  T   +L  C+      LG+
Sbjct: 306 DRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGE 365

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IH+ S++   E+++ +   ++D Y + G L     +   + +++VVSWT+MI GY +  
Sbjct: 366 QIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHE 425

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS-TRYDLSVSNL 247
            CK+A++ F+EM+K     P+   L + +S C+ I+A+  G  +H+ I  + Y   VS  
Sbjct: 426 CCKDALAAFKEMQKCG-IWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVS-- 482

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           + NA++N+Y +CG +  A   F  + +KD+I+W+ ++SG A +G   +AL++F  M  + 
Sbjct: 483 IWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSG 542

Query: 308 VFPDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
           V  +  TF++ +SA ++   + QG  I  + + T +    ++ +   ++ +YG+ G  E+
Sbjct: 543 VKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGN--ALISLYGKCGSFED 600

Query: 367 AEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQDLVNKKGVS-VGTFALMS 421
           A+    EM    E S W  ++ +C  H       ++FD+++++ +    V+ +G  A  S
Sbjct: 601 AKMEFSEMSERNEVS-WNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACS 659

Query: 422 N 422
           +
Sbjct: 660 H 660



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 193/382 (50%), Gaps = 7/382 (1%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           Y  +  L +C+ A    +   IHA   ++G   +IF+ N+++  Y+       A ++F  
Sbjct: 144 YVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCD 203

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLG 127
           +   D V++ T+ISG ++CG  + A+++F  +    + P+  T+ S+L+AC+SL   + G
Sbjct: 204 MPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKG 263

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
             +H++  +    ++ I++ ++LD Y++CG + +   +F    + NVV W  M+  + + 
Sbjct: 264 TQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQI 323

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
               ++  +F +M+      PN+ T   +L  C+    +  G+ +HS +S +        
Sbjct: 324 NDLAKSFELFCQMQAAG-IRPNQFTYPCILRTCTCTREIDLGEQIHS-LSVKTGFESDMY 381

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V   +I+MY K G +  A +V  ML  KD +SW+++I+G   + C + AL  F  M    
Sbjct: 382 VSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCG 441

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           ++PD++   + IS C+    + QGL +  A   V      +  +  +V++Y R G + EA
Sbjct: 442 IWPDNIGLASAISGCAGINAMRQGLQIH-ARIYVSGYSGDVSIWNALVNLYARCGRIREA 500

Query: 368 EAFIREMPIEAEWSVWGALLNA 389
            +   E+  + E + W  L++ 
Sbjct: 501 FSSFEEIEHKDEIT-WNGLVSG 521



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 190/379 (50%), Gaps = 8/379 (2%)

Query: 13  FTQALKAC-SLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           F  AL+AC       Q   EIHA  +  G      + N L+  Y     +  A ++F  +
Sbjct: 44  FACALRACRGNGRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEEL 103

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              D VSW  ++SG ++ G  +EA+ ++  +    V P    L SVLS+C+       G+
Sbjct: 104 SARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGR 163

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IHA   ++   + I + NA++  Y+RCGS      +F  MP R+ V++ T+I G+A+ G
Sbjct: 164 LIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCG 223

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
             + A+ +F+EM+ +    P+  T+ ++L+AC+S+  L  G  +HSY+  +  +S   ++
Sbjct: 224 HGEHALEIFEEMQFSG-LSPDCVTISSLLAACASLGDLQKGTQLHSYL-FKAGISSDYIM 281

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
             +++++YVKCGDV  A+ +FN     + + W+ ++          ++ +LF  M    +
Sbjct: 282 EGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGI 341

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            P+  T+  ++  C+    +D G  +  ++S        M     ++DMY + G LE+A 
Sbjct: 342 RPNQFTYPCILRTCTCTREIDLGEQIH-SLSVKTGFESDMYVSGVLIDMYSKYGWLEKAR 400

Query: 369 AFIREMPIEAEWSVWGALL 387
             + EM  E +   W +++
Sbjct: 401 RVL-EMLKEKDVVSWTSMI 418



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 146/289 (50%), Gaps = 5/289 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M  C    ++     A+  C+  +  ++ L+IHA +   G+  D+ I N+L++ Y     
Sbjct: 437 MQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGR 496

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           I  A   F  +   D ++W  ++SG ++ G H+EA+ +F  +D   VK N  T VS LSA
Sbjct: 497 IREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSA 556

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
            ++L   K GK IHA  ++  +     + NA++  Y +CGS       F +M +RN VSW
Sbjct: 557 SANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSW 616

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
            T+I   ++ G   EA+ +F +M+K +  +PN+ T + VL+ACS +  +  G      +S
Sbjct: 617 NTIITSCSQHGRGLEALDLFDQMKK-EGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMS 675

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDKISWSTVIS 285
             Y +         VI+++ + G +  A + +  M    D + W T++S
Sbjct: 676 DEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLS 724


>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 535

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 160/480 (33%), Positives = 255/480 (53%), Gaps = 40/480 (8%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           F   L+ C      +K   IHAH+++       F+   +L     +  +  A  IF  + 
Sbjct: 10  FVTTLRNCPKIAELKK---IHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQLE 66

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGK 128
            P+V S+  II   +    H  AI +F  +       P+  T   V+ +C+ L+  +LG+
Sbjct: 67  NPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQ 126

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLA---------------------------- 160
            +HAH  +   + + I +NA++D Y +CG ++                            
Sbjct: 127 QVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLG 186

Query: 161 ---SCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVL 217
              S   +F +MP R +VSWTTMI GYA  G   +A+ +F+EM+     EP+E ++++VL
Sbjct: 187 QMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVG-IEPDEISVISVL 245

Query: 218 SACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK 277
            AC+ + AL  GK++H Y S +     +  V NA++ MY KCG +  A  +FN +  KD 
Sbjct: 246 PACAQLGALEVGKWIHKY-SEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDV 304

Query: 278 ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKA 337
           ISWST+I GLA +G G  A+++F  M    V P+ VTF+ ++SAC+H GL ++GL  F  
Sbjct: 305 ISWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDV 364

Query: 338 MSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
           M   Y + PQ++HY C+VD+ GR+G +E+A   I +MP++ +   W +LL++CRIH N E
Sbjct: 365 MRVDYHLEPQIEHYGCLVDLLGRSGQVEQALDTILKMPMQPDSRTWNSLLSSCRIHHNLE 424

Query: 398 MFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +     + L+  +    G + L++N +A  D+WE  + +R  IR   +KK  GCS IEVN
Sbjct: 425 IAVVAMEQLLKLEPEESGNYVLLANIYAKLDKWEGVSNVRKLIRSKRIKKTPGCSLIEVN 484



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 155/321 (48%), Gaps = 37/321 (11%)

Query: 1   MLSCPS-SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK 59
           ML+  S S + +TF   +K+C+     +   ++HAHV ++G       +N+L+  Y    
Sbjct: 96  MLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVHAHVCKFGPKTHAITENALIDMYTKCG 155

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-------------------- 99
           D+  A+Q++  +   D VSW ++ISG  + G  K A ++F                    
Sbjct: 156 DMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYAR 215

Query: 100 --CGID------------VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
             C  D            ++P+  +++SVL AC+ L + ++GK IH +S ++    N  +
Sbjct: 216 GGCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVGKWIHKYSEKSGFLKNAGV 275

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            NA+++ Y +CG +     LF +M +++V+SW+TMIGG A  G    A+ VF++M+K   
Sbjct: 276 FNALVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMIGGLANHGKGYAAIRVFEDMQKAG- 334

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
             PN  T V VLSAC+     + G      +   Y L         ++++  + G V  A
Sbjct: 335 VTPNGVTFVGVLSACAHAGLWNEGLRYFDVMRVDYHLEPQIEHYGCLVDLLGRSGQVEQA 394

Query: 266 IQ-VFNMLAYKDKISWSTVIS 285
           +  +  M    D  +W++++S
Sbjct: 395 LDTILKMPMQPDSRTWNSLLS 415



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 173/377 (45%), Gaps = 48/377 (12%)

Query: 102 IDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR-NLNENNIILDNAILDFYIRCGSLA 160
           + V+   N  V+ L  C  +   K    IHAH ++ +L+++N ++   +LD    C +L+
Sbjct: 1   MGVRELENRFVTTLRNCPKIAELK---KIHAHIVKLSLSQSNFLV-TKMLDL---CDNLS 53

Query: 161 SCGY---LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVL 217
              Y   +F ++   NV S+  +I  Y        A++VF +M  TK A P++ T   V+
Sbjct: 54  HVDYATMIFQQLENPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVI 113

Query: 218 SACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK 277
            +C+ +     G+ VH+++  ++      +  NA+I+MY KCGD+  A QV+  +  +D 
Sbjct: 114 KSCAGLLCRRLGQQVHAHV-CKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDA 172

Query: 278 -------------------------------ISWSTVISGLAMNGCGRQALQLFSLMIIN 306
                                          +SW+T+I+G A  GC   AL +F  M + 
Sbjct: 173 VSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVV 232

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
            + PD+++ I+++ AC+  G ++ G  + K  S     +     +  +V+MY + G ++E
Sbjct: 233 GIEPDEISVISVLPACAQLGALEVGKWIHK-YSEKSGFLKNAGVFNALVEMYAKCGCIDE 291

Query: 367 AEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVG--TFALMSNTF 424
           A     +M IE +   W  ++     H       R+ +D+  K GV+    TF  + +  
Sbjct: 292 AWGLFNQM-IEKDVISWSTMIGGLANHGKGYAAIRVFEDM-QKAGVTPNGVTFVGVLSAC 349

Query: 425 AGADRWEDTNKIRDEIR 441
           A A  W +  +  D +R
Sbjct: 350 AHAGLWNEGLRYFDVMR 366


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 154/438 (35%), Positives = 250/438 (57%), Gaps = 10/438 (2%)

Query: 28  KALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS 87
           K  E+HA+ I  G   ++ I N+L+  Y     +      F  +   D++SWTTII+G +
Sbjct: 367 KGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYA 426

Query: 88  KCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN 142
           +  FH EAI++F      G+DV P    + SVL ACS L S    + IH +  +  +  +
Sbjct: 427 QNEFHLEAINLFRKVQVKGMDVDPM--MIGSVLRACSGLKSRNFIREIHGYVFKR-DLAD 483

Query: 143 IILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202
           I+L NAI++ Y   G +      F  +  +++VSWT+MI      G   EA+ +F  +++
Sbjct: 484 IMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQ 543

Query: 203 TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 262
           T   +P+   +++ LSA +++S+L  GK +H ++  R    +   + +++++MY  CG V
Sbjct: 544 TN-IQPDSIAIISALSATANLSSLKKGKEIHGFL-IRKGFFLEGPIASSLVDMYACCGTV 601

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
             + ++F+ +  +D I W+++I+   M+GCG +A+ LF  M    V PD +TF+AL+ AC
Sbjct: 602 ENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYAC 661

Query: 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
           SH GL+ +G   F+ M   Y++ P  +HYAC+VD+  R+  LEEA  F+R MPI+    +
Sbjct: 662 SHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEI 721

Query: 383 WGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442
           W ALL AC IH N E+ +   ++L+     + G +AL+SN FA   RW D  ++R  ++ 
Sbjct: 722 WCALLGACHIHSNKELGELAAKELLQSDTENSGKYALISNIFAADGRWNDVEEVRLRMKG 781

Query: 443 MGLKKKTGCSWIEVNPSI 460
            GLKK  GCSWIEV+  I
Sbjct: 782 NGLKKNPGCSWIEVDNKI 799



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 214/399 (53%), Gaps = 30/399 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YTF  AL+        +  + IH  V++  H  D+++ N+L+  Y     +  A ++F
Sbjct: 247 NTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVF 306

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
            S++  D VSW T++SGL +   + +A++ F  +     KP+  +++++++A     +  
Sbjct: 307 ESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLL 366

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK +HA+++RN  ++N+ + N ++D Y +C  +   G+ F  M +++++SWTT+I GYA
Sbjct: 367 KGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYA 426

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +  F  EA+++F++++  K  + +   + +VL ACS + + +F + +H Y+  R DL+  
Sbjct: 427 QNEFHLEAINLFRKVQ-VKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKR-DLA-D 483

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
            ++ NA++N+Y + G +  A + F  +  KD +SW+++I+    NG   +AL+LF  +  
Sbjct: 484 IMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQ 543

Query: 306 NAVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
             + PD +  I+ +SA +           HG L+ +G  L   +++             +
Sbjct: 544 TNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIAS------------SL 591

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           VDMY   G +E +      +  + +  +W +++NA  +H
Sbjct: 592 VDMYACCGTVENSRKMFHSVK-QRDLILWTSMINANGMH 629



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 111/416 (26%), Positives = 201/416 (48%), Gaps = 22/416 (5%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           TF   LKAC      +   EIH   ++ G+   +F+ N+L+  Y    D+  A  +F+ +
Sbjct: 147 TFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGI 206

Query: 72  VFP--DVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKL 126
           +    D VSW +IIS     G   EA+ +F     + V  N  T V+ L         KL
Sbjct: 207 MMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKL 266

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           G  IH   L++ +  ++ + NA++  Y +CG +   G +F  M  R+ VSW T++ G  +
Sbjct: 267 GMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQ 326

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
                +A++ F++M+ + + +P++ +++N+++A      L  GK VH+Y + R  L  + 
Sbjct: 327 NELYSDALNYFRDMQNSGQ-KPDQVSVLNLIAASGRSGNLLKGKEVHAY-AIRNGLDSNM 384

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            +GN +++MY KC  V      F  +  KD ISW+T+I+G A N    +A+ LF  + + 
Sbjct: 385 QIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVK 444

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
            +  D +   +++ ACS  GL  +  I           +  +     +V++YG  G ++ 
Sbjct: 445 GMDVDPMMIGSVLRACS--GLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHIDY 502

Query: 367 A-EAF--IREMPIEAEWSVWGALLNACRIHRN-----DEMFDRIRQDLVNKKGVSV 414
           A  AF  IR   I +    W +++  C +H        E+F  ++Q  +    +++
Sbjct: 503 ARRAFESIRSKDIVS----WTSMITCC-VHNGLPVEALELFYSLKQTNIQPDSIAI 553



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 172/364 (47%), Gaps = 11/364 (3%)

Query: 2   LSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDI 61
           L+ PS   H   +  L  C  A    +  ++HA +++  HL   F+   L+  Y     +
Sbjct: 39  LATPSRLEH-AHSLLLDLCVAAKALPQGQQLHALLLK-SHL-SAFLATKLVLMYGKCGSL 95

Query: 62  FSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSAC 118
             A ++F+ +    + SW  ++      G + EAI+++     + V  +A T  SVL AC
Sbjct: 96  RDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKAC 155

Query: 119 SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLF--VKMPKRNVVS 176
            +L   +LG  IH  +++      + + NA++  Y +CG L     LF  + M K + VS
Sbjct: 156 GALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVS 215

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           W ++I  +   G C EA+S+F+ M++   A  N  T V  L      S +  G  +H  +
Sbjct: 216 WNSIISAHVAEGNCLEALSLFRRMQEVGVAS-NTYTFVAALQGVEDPSFVKLGMGIHGAV 274

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
             + +      V NA+I MY KCG +  A +VF  +  +D +SW+T++SGL  N     A
Sbjct: 275 -LKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDA 333

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
           L  F  M  +   PD V+ + LI+A    G + +G  +  A +    +   MQ    +VD
Sbjct: 334 LNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEV-HAYAIRNGLDSNMQIGNTLVD 392

Query: 357 MYGR 360
           MY +
Sbjct: 393 MYAK 396



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 132/284 (46%), Gaps = 20/284 (7%)

Query: 114 VLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
           +L  C +  +   G+ +HA  L++    +  L   ++  Y +CGSL     +F +M +R 
Sbjct: 52  LLDLCVAAKALPQGQQLHALLLKS--HLSAFLATKLVLMYGKCGSLRDAVKVFDEMSERT 109

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
           + SW  ++G +   G   EA+ ++++M +      +  T  +VL AC ++     G  +H
Sbjct: 110 IFSWNALMGAFVSSGKYLEAIELYKDM-RVLGVAIDACTFPSVLKACGALGESRLGAEIH 168

Query: 234 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN--MLAYKDKISWSTVISGLAMNG 291
             ++ +        V NA+I MY KCGD+G A  +F+  M+  +D +SW+++IS     G
Sbjct: 169 G-VAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEG 227

Query: 292 CGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY 351
              +AL LF  M    V  +  TF+A +        V  G+        ++  V +  H+
Sbjct: 228 NCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGM-------GIHGAVLKSNHF 280

Query: 352 ACV------VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           A V      + MY + G +E+A      M +  ++  W  LL+ 
Sbjct: 281 ADVYVANALIAMYAKCGRMEDAGRVFESM-LCRDYVSWNTLLSG 323



 Score = 44.7 bits (104), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 7/109 (6%)

Query: 16  ALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 75
           AL A +     +K  EIH  +I  G   +  I +SL+  Y     + ++ ++F+SV   D
Sbjct: 556 ALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRD 615

Query: 76  VVSWTTII--SGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 119
           ++ WT++I  +G+  CG   +AI +F  +   +V P+  T +++L ACS
Sbjct: 616 LILWTSMINANGMHGCG--NKAIALFKKMTDQNVIPDHITFLALLYACS 662


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 147/467 (31%), Positives = 262/467 (56%), Gaps = 40/467 (8%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKD----IFSAHQIFNSVVFPDVVSWTTIISGLS 87
           IHA++I    + D+F  + L+ F V        I  A +IF+ +  P++  +  +I G S
Sbjct: 36  IHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPNLFIFNAMIRGHS 95

Query: 88  KCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
                 +A   +     +   P+  T   ++ +C+ L    +G   H H +++  E ++ 
Sbjct: 96  GSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVY 155

Query: 145 LDNAILDFYI-------------------------------RCGSLASCGYLFVKMPKRN 173
           + N+++  Y                                +CG + S   LF +MP++N
Sbjct: 156 VQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKN 215

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
           +V+W+TMI GYA+     +AV +F+ ++ ++    NE  +V+V+S+C+ + AL  G+  H
Sbjct: 216 LVTWSTMISGYAQNNHFDKAVELFKVLQ-SQGVRANETVMVSVISSCAHLGALELGERAH 274

Query: 234 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG 293
            Y+  +  ++++ ++G A+++MY +CG +  A+ VF  L  +D +SW+ +I+GLAM+G  
Sbjct: 275 DYV-VKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYS 333

Query: 294 RQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
            ++L+ F+ M+   + P D+TF A++SACSHGGLV++G  +F++M   + + P+++HY C
Sbjct: 334 ERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGC 393

Query: 354 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVS 413
           +VD+ GRAG LEEAE F+ +MP++    VWGALL ACRIH+N E+ +R+ + L+      
Sbjct: 394 MVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQLLPQH 453

Query: 414 VGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            G + L+SN +A A  WE   ++R  ++  GLKK  G S IE++  +
Sbjct: 454 SGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRV 500



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 128/247 (51%), Gaps = 35/247 (14%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           ++ TF   +K+C+  H      + H H+I++G   D+++QNSL+H Y T  D  +A  IF
Sbjct: 118 DNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIF 177

Query: 69  NSVVFPDVVSWTTIISGLSKCG-------------------------------FHKEAID 97
             + + DVVSWT++I G +KCG                                  +A++
Sbjct: 178 QRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVE 237

Query: 98  MFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
           +F  +    V+ N   +VSV+S+C+ L + +LG+  H + ++N    N+IL  A++D Y 
Sbjct: 238 LFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYA 297

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           RCGS+    ++F  +P+R+ +SWT +I G A  G+ + ++  F  M +     P + T  
Sbjct: 298 RCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAG-LTPRDITFT 356

Query: 215 NVLSACS 221
            VLSACS
Sbjct: 357 AVLSACS 363



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 142/320 (44%), Gaps = 46/320 (14%)

Query: 115 LSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLAS----CGYLFVKMP 170
           L  CS L   K+   IHA+ +R     ++   + ++ F +   S  S       +F ++ 
Sbjct: 24  LETCSDLTHLKI---IHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQ 80

Query: 171 KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGK 230
             N+  +  MI G++      +A   + + ++ +   P+  T   ++ +C+ +  +S G 
Sbjct: 81  NPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQR-QGLLPDNLTFPFLVKSCTKLHCISMGS 139

Query: 231 YVHSYISTRYDLSVSNLVGNAVINMYV-------------------------------KC 259
             H +I  ++       V N++++MY                                KC
Sbjct: 140 QAHGHI-IKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKC 198

Query: 260 GDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALI 319
           GDV  A ++F+ +  K+ ++WST+ISG A N    +A++LF ++    V  ++   +++I
Sbjct: 199 GDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVI 258

Query: 320 SACSHGGLVDQGLILFKAMSTVYE--IVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIE 377
           S+C+H G ++ G    +A   V +  +   +     +VDMY R G +++A     ++P E
Sbjct: 259 SSCAHLGALELGE---RAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLP-E 314

Query: 378 AEWSVWGALLNACRIHRNDE 397
            +   W AL+    +H   E
Sbjct: 315 RDTLSWTALIAGLAMHGYSE 334


>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 639

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 152/430 (35%), Positives = 247/430 (57%), Gaps = 14/430 (3%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           +H+HV++ G + D ++ N+L+  Y        A ++F  +   D VSW + ++ + + G 
Sbjct: 175 VHSHVVKLGSIEDTYVGNALIDAYSKNGGFLDASKVFEEMPRRDTVSWNSAMAAMVRQGE 234

Query: 92  HKEAIDMFCGIDVKPNANTLV--SVLSACSSLVSHKLGKAIHAHSL-RNLNENNIILDNA 148
              A  MF   D  P+ +T+   +VL   +     K GK   A  L + + E N++  + 
Sbjct: 235 VASARRMF---DEMPDKDTVSWNTVLDGYT-----KAGKMEDAFELFQCMPERNVVSWST 286

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
           ++  Y + G +     +F KMP +N+V+WT M+   A+ G  +EA  +F +M K    E 
Sbjct: 287 VVSGYCKKGDIEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGRLFTQM-KEAAVEL 345

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           + A +V++L+AC+   +L+ GK +H Y+ TR  L  S  V NA+I+M+ KCG V  A  V
Sbjct: 346 DVAAVVSILAACAESGSLALGKRIHRYVRTR-QLGRSTHVCNAMIDMFCKCGCVNRADYV 404

Query: 269 FNM-LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           F+  +A KD +SW+T+I G AM+G G +AL  F+ M +    PD VT I ++SAC+H G 
Sbjct: 405 FDTEIAEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFRPDAVTMINVLSACTHMGF 464

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           V++G   F  M   Y IVPQ++HY C++D+ GR GL+EEA   I+ MP +    +WG+LL
Sbjct: 465 VEEGRQHFSNMERDYGIVPQIEHYGCMIDLLGRGGLIEEAVGLIKSMPWDPNEVIWGSLL 524

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
           +ACR+H+N E  +    +L   +  + G +A++SN +A A +W D  K R +++  G +K
Sbjct: 525 SACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQK 584

Query: 448 KTGCSWIEVN 457
             G SWIE++
Sbjct: 585 SAGSSWIELD 594



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/379 (21%), Positives = 172/379 (45%), Gaps = 20/379 (5%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSW--TTIISGLSK 88
           E+HA ++++G   D    + L+  Y   + + ++ +IF S   P   ++   T++   + 
Sbjct: 76  ELHAQLLKHGLHLDPLAASKLISSYALQRRLPASRRIFASFPNPQATTFLPNTLLRAYAL 135

Query: 89  CGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148
                 A+ +F  +  + ++ T   ++ A SS     L +A+H+H ++  +  +  + NA
Sbjct: 136 NALPHAAVSLFSAMPQR-DSFTYSFLIKALSSSGLTPL-RAVHSHVVKLGSIEDTYVGNA 193

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
           ++D Y + G       +F +MP+R+ VSW + +     +G    A  +F EM       P
Sbjct: 194 LIDAYSKNGGFLDASKVFEEMPRRDTVSWNSAMAAMVRQGEVASARRMFDEM-------P 246

Query: 209 NEATLV--NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
           ++ T+    VL   +    +     +   +  R  +S S      V++ Y K GD+ +A 
Sbjct: 247 DKDTVSWNTVLDGYTKAGKMEDAFELFQCMPERNVVSWST-----VVSGYCKKGDIEMAR 301

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
            +F+ +  K+ ++W+ ++S  A NG   +A +LF+ M   AV  D    +++++AC+  G
Sbjct: 302 VIFDKMPTKNLVTWTIMVSACAQNGLVEEAGRLFTQMKEAAVELDVAAVVSILAACAESG 361

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 386
            +  G  + + + T  ++         ++DM+ + G +  A+        E +   W  +
Sbjct: 362 SLALGKRIHRYVRT-RQLGRSTHVCNAMIDMFCKCGCVNRADYVFDTEIAEKDSVSWNTI 420

Query: 387 LNACRIH-RNDEMFDRIRQ 404
           +    +H   D+  D   Q
Sbjct: 421 IGGFAMHGHGDKALDFFAQ 439


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 148/454 (32%), Positives = 264/454 (58%), Gaps = 9/454 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +T+   L+ C+         +IH+  ++ G   D+++   L+  Y     +  A ++ 
Sbjct: 344 NQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVL 403

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLVS 123
             +   DVVSWT++I+G  +    K+A+  F     CGI   P+   L S +S C+ + +
Sbjct: 404 EMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGI--WPDNIGLASAISGCAGINA 461

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            + G  IHA    +    ++ + NA+++ Y RCG +      F ++  ++ ++W  ++ G
Sbjct: 462 MRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSG 521

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           +A+ G  +EA+ VF  M+++   + N  T V+ LSA ++++ +  GK +H+ +  +   S
Sbjct: 522 FAQSGLHEEALKVFMRMDQSG-VKHNVFTFVSALSASANLAEIKQGKQIHARV-IKTGHS 579

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
               VGNA+I++Y KCG    A   F+ ++ ++++SW+T+I+  + +G G +AL LF  M
Sbjct: 580 FETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQM 639

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
               + P+DVTFI +++ACSH GLV++GL  FK+MS  Y I P+  HYACV+D++GRAG 
Sbjct: 640 KKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQ 699

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           L+ A+ FI EMPI A+  VW  LL+AC++H+N E+ +   + L+  +     ++ L+SN 
Sbjct: 700 LDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNA 759

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +A  ++W + +++R  +R  G++K+ G SWIEV 
Sbjct: 760 YAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVK 793



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 223/421 (52%), Gaps = 16/421 (3%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T +  L AC+     QK  ++H+++ + G   D  ++ SLL  YV   D+ +A  IFNS 
Sbjct: 246 TISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSS 305

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
              +VV W  ++    +     ++ ++FC +    ++PN  T   +L  C+      LG+
Sbjct: 306 DRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGE 365

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IH+ S++   E+++ +   ++D Y + G L     +   + +++VVSWT+MI GY +  
Sbjct: 366 QIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHE 425

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS-TRYDLSVSNL 247
            CK+A++ F+EM+K     P+   L + +S C+ I+A+  G  +H+ I  + Y   VS  
Sbjct: 426 CCKDALAAFKEMQKCG-IWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVS-- 482

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           + NA++N+Y +CG +  A   F  + +KD+I+W+ ++SG A +G   +AL++F  M  + 
Sbjct: 483 IWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSG 542

Query: 308 VFPDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
           V  +  TF++ +SA ++   + QG  I  + + T +    ++ +   ++ +YG+ G  E+
Sbjct: 543 VKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGN--ALISLYGKCGSFED 600

Query: 367 AEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQDLVNKKGVS-VGTFALMS 421
           A+    EM    E S W  ++ +C  H       ++FD+++++ +    V+ +G  A  S
Sbjct: 601 AKMEFSEMSERNEVS-WNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACS 659

Query: 422 N 422
           +
Sbjct: 660 H 660



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 193/382 (50%), Gaps = 7/382 (1%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           Y  +  L +C+ A    +   IHA   ++G   +IF+ N+++  Y+       A ++F  
Sbjct: 144 YVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCD 203

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLG 127
           +   D V++ T+ISG ++CG  + A+++F  +    + P+  T+ S+L+AC+SL   + G
Sbjct: 204 MPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKG 263

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
             +H++  +    ++ I++ ++LD Y++CG + +   +F    + NVV W  M+  + + 
Sbjct: 264 TQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQI 323

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
               ++  +F +M+      PN+ T   +L  C+    +  G+ +HS +S +        
Sbjct: 324 NDLAKSFELFCQMQAAG-IRPNQFTYPCILRTCTCTREIDLGEQIHS-LSVKTGFESDMY 381

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V   +I+MY K G +  A +V  ML  KD +SW+++I+G   + C + AL  F  M    
Sbjct: 382 VSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCG 441

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           ++PD++   + IS C+    + QGL +  A   V      +  +  +V++Y R G + EA
Sbjct: 442 IWPDNIGLASAISGCAGINAMRQGLQIH-ARIYVSGYSGDVSIWNALVNLYARCGRIREA 500

Query: 368 EAFIREMPIEAEWSVWGALLNA 389
            +   E+  + E + W  L++ 
Sbjct: 501 FSSFEEIEHKDEIT-WNGLVSG 521



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 190/379 (50%), Gaps = 8/379 (2%)

Query: 13  FTQALKAC-SLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           F  AL+AC       Q   EIHA  +  G      + N L+  Y     +  A ++F  +
Sbjct: 44  FACALRACRGNGRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEEL 103

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              D VSW  ++SG ++ G  +EA+ ++  +    V P    L SVLS+C+       G+
Sbjct: 104 SARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGR 163

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IHA   ++   + I + NA++  Y+RCGS      +F  MP R+ V++ T+I G+A+ G
Sbjct: 164 LIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCG 223

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
             + A+ +F+EM+ +    P+  T+ ++L+AC+S+  L  G  +HSY+  +  +S   ++
Sbjct: 224 HGEHALEIFEEMQFSG-LSPDCVTISSLLAACASLGDLQKGTQLHSYL-FKAGISSDYIM 281

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
             +++++YVKCGDV  A+ +FN     + + W+ ++          ++ +LF  M    +
Sbjct: 282 EGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGI 341

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            P+  T+  ++  C+    +D G  +  ++S        M     ++DMY + G LE+A 
Sbjct: 342 RPNQFTYPCILRTCTCTREIDLGEQIH-SLSVKTGFESDMYVSGVLIDMYSKYGWLEKAR 400

Query: 369 AFIREMPIEAEWSVWGALL 387
             + EM  E +   W +++
Sbjct: 401 RVL-EMLKEKDVVSWTSMI 418



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 146/289 (50%), Gaps = 5/289 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M  C    ++     A+  C+  +  ++ L+IHA +   G+  D+ I N+L++ Y     
Sbjct: 437 MQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGR 496

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           I  A   F  +   D ++W  ++SG ++ G H+EA+ +F  +D   VK N  T VS LSA
Sbjct: 497 IREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSA 556

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
            ++L   K GK IHA  ++  +     + NA++  Y +CGS       F +M +RN VSW
Sbjct: 557 SANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSW 616

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
            T+I   ++ G   EA+ +F +M+K +  +PN+ T + VL+ACS +  +  G      +S
Sbjct: 617 NTIITSCSQHGRGLEALDLFDQMKK-EGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMS 675

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDKISWSTVIS 285
             Y +         VI+++ + G +  A + +  M    D + W T++S
Sbjct: 676 DEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLS 724


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 146/452 (32%), Positives = 258/452 (57%), Gaps = 39/452 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +T+    KACS+A   Q+  +IH HV+++G   D+ I+++ +  Y +   +  A ++F
Sbjct: 131 NKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMF 190

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
            S    DVV W T+I G  K           CG            VL A   L +     
Sbjct: 191 YSGE-SDVVCWNTMIDGYLK-----------CG------------VLEAAKGLFAQM--- 223

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
                 ++N+   N++++        + G+L     LF +M +R+ +SW++M+ GY   G
Sbjct: 224 -----PVKNIGSWNVMING-----LAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAG 273

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
             KEA+ +FQ+M++ +E  P    L +VL+ACS+I A+  G++VH+Y+  R  + +  ++
Sbjct: 274 RYKEALEIFQQMQR-EETRPGRFILSSVLAACSNIGAIDQGRWVHAYLK-RNSIKLDAVL 331

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
           G A+++MY KCG + +  +VF  +  ++  +W+ +I GLA++G    AL+LFS +    +
Sbjct: 332 GTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRM 391

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            P+ +T + +++AC+H G VD+GL +F+ M   Y + P+++HY C+VD+ GR+GL  EAE
Sbjct: 392 KPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAE 451

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
             I  MP++   +VWGALL ACRIH N ++ +R+ + L+  +  + G + L+SN +A   
Sbjct: 452 DLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVG 511

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           R++D +KIR  ++  G+K   G S +++N ++
Sbjct: 512 RFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTV 543


>gi|224125246|ref|XP_002319538.1| predicted protein [Populus trichocarpa]
 gi|222857914|gb|EEE95461.1| predicted protein [Populus trichocarpa]
          Length = 577

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 153/456 (33%), Positives = 260/456 (57%), Gaps = 7/456 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +  T T  L AC           +H   +  G   +I + N+L+  Y       S  Q+F
Sbjct: 58  DQATLTTILSACDRPELGFVNKMVHCLAVLNGFQREISVGNALITSYFKCGFSSSGMQVF 117

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           + ++  +V++WT IISGL +   +++++ +F  +    V+PN+ T +S L ACS L + +
Sbjct: 118 DEMLERNVITWTAIISGLVQSELYRDSLRLFVEMTNGLVEPNSLTYLSSLMACSGLQALR 177

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G  IH    +   +++  +++A++D Y +CGS+     +F    + + VS T ++ G+A
Sbjct: 178 EGCQIHGRVWKLGLQSDFCVESALMDMYSKCGSMGDTLQIFESAGQLDKVSMTIILAGFA 237

Query: 186 ERGFCKEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           + GF +EA+  F +M E   E + N  +   VL    + ++L  G+ +HS +  R     
Sbjct: 238 QNGFEEEAMQFFVKMLEAGTEIDSNMVS--AVLGVFGADTSLGLGQQIHSLVIKR-SFGS 294

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           +  VGN +INMY KCGD+  + +VF+ +   + +SW+++I+  A +G G +ALQL+  M 
Sbjct: 295 NPFVGNGLINMYSKCGDLEDSTKVFSRMPCMNSVSWNSMIAAFARHGDGSRALQLYKEMR 354

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
           +  V P DVTF++L+ ACSH GLV++G+   K+M+ V+++ P+M+HYACVVDM GRAGLL
Sbjct: 355 LKGVEPTDVTFLSLLHACSHVGLVEKGMEFLKSMTEVHKLTPRMEHYACVVDMLGRAGLL 414

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
            EA+ FI  +PI+ +  VW ALL AC IH + EM     + L+         + L++N +
Sbjct: 415 NEAKTFIEGLPIKPDVLVWQALLGACGIHGDPEMGKYAAEHLILSAPEKPSPYILLANIY 474

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +   RW++  K    ++ M + K+TG SWIE+  ++
Sbjct: 475 SSKGRWKERAKTIKRMKEMCVAKETGISWIEIENNL 510



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 173/363 (47%), Gaps = 22/363 (6%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID----VKPNANTLVSVLSACS 119
           A ++F+ +   D VSW  +ISG  K G        F  +      + +  TL ++LSAC 
Sbjct: 11  AAKLFDEMPMRDTVSWNIMISGFLKDGSFDVGFGFFKQMQSLGFYRLDQATLTTILSACD 70

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
                 + K +H  ++ N  +  I + NA++  Y +CG  +S   +F +M +RNV++WT 
Sbjct: 71  RPELGFVNKMVHCLAVLNGFQREISVGNALITSYFKCGFSSSGMQVFDEMLERNVITWTA 130

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           +I G  +    ++++ +F EM      EPN  T ++ L ACS + AL  G  +H  +  +
Sbjct: 131 IISGLVQSELYRDSLRLFVEMTNGL-VEPNSLTYLSSLMACSGLQALREGCQIHGRV-WK 188

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
             L     V +A+++MY KCG +G  +Q+F      DK+S + +++G A NG   +A+Q 
Sbjct: 189 LGLQSDFCVESALMDMYSKCGSMGDTLQIFESAGQLDKVSMTIILAGFAQNGFEEEAMQF 248

Query: 300 FSLMIINAVFPDD---VTFIALISACSHGGLVDQ--GLILFKAMSTVYEIVPQMQHYACV 354
           F  M+      D       + +  A +  GL  Q   L++ ++  +     P + +   +
Sbjct: 249 FVKMLEAGTEIDSNMVSAVLGVFGADTSLGLGQQIHSLVIKRSFGS----NPFVGN--GL 302

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH----RNDEMFDRIRQDLVNKK 410
           ++MY + G LE++      MP     S W +++ A   H    R  +++  +R   V   
Sbjct: 303 INMYSKCGDLEDSTKVFSRMPCMNSVS-WNSMIAAFARHGDGSRALQLYKEMRLKGVEPT 361

Query: 411 GVS 413
            V+
Sbjct: 362 DVT 364



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 89/172 (51%), Gaps = 3/172 (1%)

Query: 153 YIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEAT 212
           Y + G L     LF +MP R+ VSW  MI G+ + G        F++M+       ++AT
Sbjct: 2   YAKNGVLTDAAKLFDEMPMRDTVSWNIMISGFLKDGSFDVGFGFFKQMQSLGFYRLDQAT 61

Query: 213 LVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 271
           L  +LSAC         K VH   +   +   +S  VGNA+I  Y KCG     +QVF+ 
Sbjct: 62  LTTILSACDRPELGFVNKMVHCLAVLNGFQREIS--VGNALITSYFKCGFSSSGMQVFDE 119

Query: 272 LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
           +  ++ I+W+ +ISGL  +   R +L+LF  M    V P+ +T+++ + ACS
Sbjct: 120 MLERNVITWTAIISGLVQSELYRDSLRLFVEMTNGLVEPNSLTYLSSLMACS 171


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 154/454 (33%), Positives = 260/454 (57%), Gaps = 17/454 (3%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T T  ++AC      +    +H +V+  G  +DI +  S +  Y  + DI SA  +F  +
Sbjct: 233 TMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKM 292

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMF-------CGIDVKPNANTLVSVLSACSSLVSH 124
              ++VSW  +ISG  + G   E+ D+F        G D+     T+VS+L  CS   S 
Sbjct: 293 PTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDL----TTIVSLLQGCSQTASL 348

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
             GK +H  ++R+  E+N+IL  AI+D Y +CGSL    ++F +M  RNV++WT M+ G 
Sbjct: 349 ATGKILHGCAIRSF-ESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGL 407

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLS 243
           A+ G  ++A+ +F +M++   A  N  T V+++ +C+ + +L  G+ +H ++    +   
Sbjct: 408 AQNGHAEDALRLFAQMQEEGIA-ANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFD 466

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDKISWSTVISGLAMNGCGRQALQLFSL 302
           + N+   A+++MY KCG + +A ++F+  +  KD + W+++I+G  M+G G QA+ ++  
Sbjct: 467 IVNMT--ALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHK 524

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
           MI   + P+  TF++L+SACSH  LV+QG+ LF +M   + I P  +HYAC+VD+  RAG
Sbjct: 525 MIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAG 584

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSN 422
             EEA+A I +MP +   +V  ALL+ CR H+N  +  +    L+    ++ G + ++SN
Sbjct: 585 RFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIMLSN 644

Query: 423 TFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
            +A A RW+  + IR  +R  GLKK  G S +E 
Sbjct: 645 IYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVET 678



 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 207/388 (53%), Gaps = 17/388 (4%)

Query: 14  TQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF 73
           T ALKAC+ +  ++  +EI +  +E G   + F+ +S++ F V    I  A ++F+ +  
Sbjct: 134 TFALKACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPN 193

Query: 74  PDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKLGKAI 130
            DVV W +II G  + G    A  +F    G  +KP+  T+ S++ AC  + + KLGK +
Sbjct: 194 KDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCM 253

Query: 131 HAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFC 190
           H + L     N+I++  + +D Y + G + S  ++F KMP RN+VSW  MI G    G  
Sbjct: 254 HGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLV 313

Query: 191 KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV-G 249
            E+  +F  + ++     +  T+V++L  CS  ++L+ GK +H      ++   SNL+  
Sbjct: 314 GESFDLFHRLVRS-SGGFDLTTIVSLLQGCSQTASLATGKILHGCAIRSFE---SNLILS 369

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
            A++++Y KCG +  A  VFN +  ++ I+W+ ++ GLA NG    AL+LF+ M    + 
Sbjct: 370 TAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIA 429

Query: 310 PDDVTFIALISACSHGGLVDQGLI----LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
            + VTF++L+ +C+H G + +G      LF+ +   ++IV    +   +VDMY + G + 
Sbjct: 430 ANSVTFVSLVHSCAHLGSLKRGRSIHGHLFR-LGFAFDIV----NMTALVDMYAKCGKIN 484

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIH 393
            AE       I  +  +W +++    +H
Sbjct: 485 LAERIFSHGSISKDVVLWNSMITGYGMH 512



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 132/297 (44%), Gaps = 19/297 (6%)

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           K+ HA  + N    +  +   ++  Y    SL +  Y+F +  +   +    M+ GY + 
Sbjct: 49  KSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQS 108

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G  +E + +F  M +++  E +  +    L AC+S      G  + S  +    +  +  
Sbjct: 109 GRYRETLELFGLM-RSRNLEVDSCSCTFALKACASSLDYEMGMEIISS-AVEKGMEKNRF 166

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           VG+++I+  VK G +G A +VF+ +  KD + W+++I G    GC   A QLF  M  + 
Sbjct: 167 VGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSG 226

Query: 308 VFPDDVTFIALISACSHGGLVD-------QGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
           + P  +T  +LI AC  GG+ +        G +L   +     ++         VDMY +
Sbjct: 227 IKPSPITMTSLIQAC--GGIGNLKLGKCMHGYVLGLGLGNDILVLTSF------VDMYSK 278

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNAC-RIHRNDEMFDRIRQDLVNKKGVSVGT 416
            G +E A     +MP     S W A+++ C R     E FD   + + +  G  + T
Sbjct: 279 MGDIESARWVFYKMPTRNLVS-WNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTT 334



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 5/167 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  TF   + +C+     ++   IH H+   G   DI    +L+  Y     I  A +IF
Sbjct: 431 NSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIF 490

Query: 69  N-SVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSH 124
           +   +  DVV W ++I+G    G   +A+ ++  +    +KPN  T +S+LSACS     
Sbjct: 491 SHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLV 550

Query: 125 KLGKAIHAHSLRNLNENNIILDNAIL-DFYIRCGSLASCGYLFVKMP 170
           + G ++     R+ N   I    A L D   R G       L  KMP
Sbjct: 551 EQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKMP 597


>gi|125590818|gb|EAZ31168.1| hypothetical protein OsJ_15267 [Oryza sativa Japonica Group]
          Length = 586

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 156/450 (34%), Positives = 239/450 (53%), Gaps = 50/450 (11%)

Query: 9   NHYTFTQALKACS-LAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           + YT   ALKAC+ L    ++  + HA   + G L  + +QN+L+ FY        A ++
Sbjct: 116 DGYTLPAALKACARLGGGLREGCQAHAVAEKAGFLGRVPVQNALVTFYGACGQCGDARKV 175

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLG 127
           F+ +   DVVSWT ++S  ++ G   EA+ +   +DV PN  TL SVL AC +L + + G
Sbjct: 176 FDEMAERDVVSWTALLSAFTRGGMFMEALGVLAEMDVTPNEVTLASVLVACGNLGTARAG 235

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           KA+H    R   E N+I+ NA+LD Y++C  L     +F  +  R++VSWT MI G  + 
Sbjct: 236 KAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQC 295

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
               EA+ VF  M+ +   +P++  L  VLSAC+S+ AL  G++VH YI  R  +     
Sbjct: 296 KRPSEALEVFNAMQISG-VKPDKVVLSTVLSACASLGALESGRWVHEYIE-RKGIEWDVH 353

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           VG +V++MYVKCG +  A+ +F  +  K+  SW+ +I+G A++G GR+AL  F  M+ + 
Sbjct: 354 VGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDRMVASG 413

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           + P++VTFI ++ AC H GLV +G  LF+ M+  Y++ P   HY C+VD+ GRAGL++EA
Sbjct: 414 LHPNEVTFITVLGACCHSGLVQEGRQLFELMTKSYKLSPWEDHYGCMVDLLGRAGLIQEA 473

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
              I+ MP+                                                  +
Sbjct: 474 YDVIKAMPMRPV-----------------------------------------------S 486

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           DRW D  K R  +   G++K+ G S IEVN
Sbjct: 487 DRWADVGKARGFMNEKGMQKEPGSSVIEVN 516


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 147/452 (32%), Positives = 254/452 (56%), Gaps = 26/452 (5%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L  C+ +        +H+  I+      I   N+LL  Y    D+  A ++F  +
Sbjct: 253 TIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKM 312

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
              +VVSWT++I+G ++ G+   AI +   ++   VK +   + S+L AC+   S   GK
Sbjct: 313 GERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGK 372

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H +   N   +N+ + NA++D Y +CGS+     +F  M  ++++SW TM+G      
Sbjct: 373 DVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG------ 426

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
                           E +P+  T+  +L AC+S+SAL  GK +H YI  R   S    V
Sbjct: 427 ----------------ELKPDSRTMACILPACASLSALERGKEIHGYI-LRNGYSSDRHV 469

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            NA++++YVKCG +G+A  +F+M+  KD +SW+ +I+G  M+G G +A+  F+ M    +
Sbjct: 470 ANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGI 529

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD+V+FI+++ ACSH GL++QG   F  M   + I P+++HYAC+VD+  R G L +A 
Sbjct: 530 EPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAY 589

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
            FI  +PI  + ++WGALL  CRI+ + E+ +++ + +   +  + G + L++N +A A+
Sbjct: 590 KFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAE 649

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           + E+  ++R++I + GL+K  GCSWIE+   +
Sbjct: 650 KREEVKRMREKIGKKGLRKNPGCSWIEIKGRV 681



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 109/365 (29%), Positives = 180/365 (49%), Gaps = 51/365 (13%)

Query: 36  VIEYGHLHDIFIQNSLLHFYVTV------KDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
           V EY  + D   + S+  F + V      K   SA ++F+ +   DV+SW ++ISG    
Sbjct: 172 VSEYAKIGDF--KESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSN 229

Query: 90  GFHKEAID-----MFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
           G  +  +      M+ GIDV  +  T++SVL  C++  +  LGKA+H+ ++++  E  I 
Sbjct: 230 GLTERGLGIYKQMMYLGIDV--DLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRIN 287

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
             N +LD Y +CG L     +F KM +RNVVSWT+MI GY   G+   A+ + Q+MEK +
Sbjct: 288 FSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEK-E 346

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
             + +   + ++L AC+   +L  GK VH YI    +++ +  V NA+++MY KCG +  
Sbjct: 347 GVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN-NMASNLFVCNALMDMYAKCGSMEG 405

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
           A  VF+ +  KD ISW+T++  L                      PD  T   ++ AC+ 
Sbjct: 406 ANSVFSTMVVKDIISWNTMVGELK---------------------PDSRTMACILPACAS 444

Query: 325 GGLVDQ-----GLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIE-- 377
              +++     G IL    S+   +   +      VD+Y + G+L  A      +P +  
Sbjct: 445 LSALERGKEIHGYILRNGYSSDRHVANAL------VDLYVKCGVLGLARLLFDMIPSKDL 498

Query: 378 AEWSV 382
             W+V
Sbjct: 499 VSWTV 503



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 145/330 (43%), Gaps = 72/330 (21%)

Query: 108 ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAI----LDFYIRCGSLASCG 163
             T  SVL  C+ L S   GK +H+     +  N++ +D A+    + FY  CG L    
Sbjct: 99  TKTYGSVLQLCAGLKSLTDGKKVHSI----IKSNSVGVDEALGLKLVSFYATCGDLKEGR 154

Query: 164 YLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEM-EKTKEAEPNE------------ 210
            +F  M K+NV  W  M+  YA+ G  KE++ +F+ M EK  E +  E            
Sbjct: 155 RVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDR 214

Query: 211 -------------------------------------ATLVNVLSACSSISALSFGKYVH 233
                                                AT+++VL  C++   LS GK VH
Sbjct: 215 DVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVH 274

Query: 234 SY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
           S  I + ++  ++    N +++MY KCGD+  A++VF  +  ++ +SW+++I+G   +G 
Sbjct: 275 SLAIKSSFERRIN--FSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGW 332

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL---FKAMSTVYEIVPQMQ 349
              A+ L   M    V  D V   +++ AC+  G +D G  +    KA +    +     
Sbjct: 333 SDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNL----- 387

Query: 350 HYAC--VVDMYGRAGLLEEAEAFIREMPIE 377
            + C  ++DMY + G +E A +    M ++
Sbjct: 388 -FVCNALMDMYAKCGSMEGANSVFSTMVVK 416



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 17/151 (11%)

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
           +++E    T  +VL  C+ + +L+ GK VHS I +   + V   +G  +++ Y  CGD+ 
Sbjct: 93  QKSELETKTYGSVLQLCAGLKSLTDGKKVHSIIKSN-SVGVDEALGLKLVSFYATCGDLK 151

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI---INAVFP---------- 310
              +VF+ +  K+   W+ ++S  A  G  ++++ LF +M+   I    P          
Sbjct: 152 EGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKL 211

Query: 311 ---DDVTFIALISACSHGGLVDQGLILFKAM 338
              D +++ ++IS     GL ++GL ++K M
Sbjct: 212 CDRDVISWNSMISGYVSNGLTERGLGIYKQM 242


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 151/452 (33%), Positives = 260/452 (57%), Gaps = 6/452 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T+T  LKAC+ +   +   E     ++ G+  D+F+  ++L+ Y     +  A ++F+ +
Sbjct: 107 TYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKM 166

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              D+V WTT+I+GL++ G  +EA+D++  +    V+ +   ++ ++ AC++L   K+G 
Sbjct: 167 GRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGL 226

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
           +IH + +R     ++I+  +++D Y + G L     +F +M  +NV+SW+ +I G+A+ G
Sbjct: 227 SIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNG 286

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
           F   A+ +  +M+ +   +P+  +LV+VL ACS +  L  GK VH YI  R  L    + 
Sbjct: 287 FAGNALQLVVDMQ-SFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRR--LHFDCVS 343

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
             AVI+MY KCG +  A  VF+ ++++D ISW+ +I+   ++G G +AL LF  M    V
Sbjct: 344 STAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNV 403

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD  TF +L+SA SH GLV++G   F  M   Y+I P  +HYAC+VD+  RAG +EEA+
Sbjct: 404 KPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQ 463

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
             I  M  E   ++W ALL+ C  H    + +   + ++       G ++L+SN FA A 
Sbjct: 464 ELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFATAR 523

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           RW++  ++R  +++ G+KK  G S +EVN  +
Sbjct: 524 RWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKL 555



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 115/407 (28%), Positives = 203/407 (49%), Gaps = 25/407 (6%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           +IHA +I  G          L+  Y  +  I SA Q+F+      V +W  +I   S+ G
Sbjct: 25  KIHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRG 84

Query: 91  FHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
              EA+ ++       V+P+++T   VL AC+  +  + G+     ++     +++ +  
Sbjct: 85  AMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGA 144

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           A+L+ Y +CG +     +F KM +R++V WTTMI G A+ G  +EAV ++++M K K  E
Sbjct: 145 AVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHK-KRVE 203

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
            +   ++ ++ AC+++     G  +H Y+  R D+ +  +V  ++++MY K G + +A  
Sbjct: 204 GDGVVMLGLIQACTTLGHSKMGLSIHGYM-IRKDIIMDVIVQTSLVDMYAKNGHLELASC 262

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           VF  + YK+ ISWS +ISG A NG    ALQL   M      PD V+ ++++ ACS  G 
Sbjct: 263 VFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGF 322

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYAC-----VVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
           +  G        +V+  + +  H+ C     V+DMY + G L  A     ++      S 
Sbjct: 323 LKLG-------KSVHGYIVRRLHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSIS- 374

Query: 383 WGALLNACRIHRNDE----MFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           W A++ +  IH + E    +F ++R+  V        TFA + + F+
Sbjct: 375 WNAIIASYGIHGSGEEALSLFLQMRETNVKPDH---ATFASLLSAFS 418


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 149/481 (30%), Positives = 266/481 (55%), Gaps = 36/481 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  TF+  L  CS         +I+  ++++G   D+F+ + L+  Y  +  I+ A + F
Sbjct: 137 NRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYF 196

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN------------------- 109
           + +   +VV   T+I+GL +CG  +E+  +FCG+  + + +                   
Sbjct: 197 DEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALD 256

Query: 110 ---------------TLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
                          T  SVL+AC SL++   GK IHA+ +R  +++N+ + +A++D Y 
Sbjct: 257 MFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYS 316

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           +C S+ S   +F +MP++NV+SWT M+ GY + GF +EAV +F EM++    EP++ TL 
Sbjct: 317 KCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNG-VEPDDFTLG 375

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
           +V+S+C+++++L  G   H        +S    V NA+I +Y KCG    + ++F  +  
Sbjct: 376 SVISSCANLASLEEGAQFHCRALVSGLISFIT-VSNALITLYGKCGSTENSHRLFTEMNI 434

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           +D++SW+ +++G A  G   + + LF  M+ + + PD VTFI ++SACS  GLV++GL  
Sbjct: 435 RDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQY 494

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F++M   + I+P + H  C++D+ GRAG LEEA  FI  MP   +   W  LL++CR+H 
Sbjct: 495 FESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHG 554

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           + E+       L+  +  +  ++ L+S+ +A   +W+   ++R  +R   ++K+ G SWI
Sbjct: 555 DMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWI 614

Query: 455 E 455
           +
Sbjct: 615 K 615



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 118/448 (26%), Positives = 204/448 (45%), Gaps = 72/448 (16%)

Query: 6   SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAH 65
           SS N+Y     LK C  +    +A ++H  +++     + F+ N+L+  Y  + ++  AH
Sbjct: 3   SSSNYYA--SLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAH 60

Query: 66  QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----------------------CGI 102
            +F+ +  P++ SW TI+S  SK G   +   +F                       C  
Sbjct: 61  HVFDHIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSD 120

Query: 103 DVKP------------NANTLVSVLSACSSLVSHKLGKAIHAHSLR-------------- 136
            V+             N  T  ++L  CS      LG+ I+   L+              
Sbjct: 121 AVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLV 180

Query: 137 -----------------NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
                             + E N+++ N ++   +RCG +     LF  + +R+ +SWT 
Sbjct: 181 DMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTI 240

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           MI G  + G  +EA+ +F+EM     A  ++ T  +VL+AC S+ AL  GK +H+Y+  R
Sbjct: 241 MITGLMQNGLEREALDMFREMRLAGFAM-DQFTFGSVLTACGSLLALGEGKQIHAYV-IR 298

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
            D   +  VG+A+++MY KC  +  A  VF  +  K+ ISW+ ++ G   NG   +A+++
Sbjct: 299 TDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKI 358

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
           F  M  N V PDD T  ++IS+C++   +++G   F   + V  ++  +     ++ +YG
Sbjct: 359 FFEMQRNGVEPDDFTLGSVISSCANLASLEEG-AQFHCRALVSGLISFITVSNALITLYG 417

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALL 387
           + G  E +     EM I  E S W ALL
Sbjct: 418 KCGSTENSHRLFTEMNIRDEVS-WTALL 444


>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 752

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 161/459 (35%), Positives = 255/459 (55%), Gaps = 11/459 (2%)

Query: 8   YNHYTFTQALKAC---SLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           Y+ +TF  ALKA    SL H H KA  IH   I+ G     F+ N+L   Y         
Sbjct: 256 YDSHTFAIALKASADSSLLH-HGKA--IHTQTIKQGFDESSFVINTLATMYNKCGKADYV 312

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSL 121
            ++F  +  PDVVSWTT+I+   + G  + A++ F  +   +V PN  T  +V+SAC++L
Sbjct: 313 MRLFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANL 372

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
              K G+ IH H LR    + + + N+I+  Y + G L S   +F  + +++++SW+T+I
Sbjct: 373 AIAKWGEQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTII 432

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
             Y++ G+ KEA      M + +  +PNE  L +VLS C S++ L  GK VH+++     
Sbjct: 433 AVYSQGGYAKEAFDYLSWMRR-EGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLC-IG 490

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
           +    +V +A+I+MY KCG V  A ++FN +   + ISW+ +I+G A +G  ++A+ LF 
Sbjct: 491 IDHEAMVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMINGYAEHGYSQEAINLFE 550

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            +    + PD VTFI +++ACSH G+VD G   F  M+  Y+I P  +HY C++D+  RA
Sbjct: 551 KISSVGLKPDYVTFIGVLTACSHAGMVDLGFYYFMLMTNEYQISPSKEHYGCIIDLLCRA 610

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           G L EAE  IR MP   +  VW  LL +CR+H + +      + L+     S GT   ++
Sbjct: 611 GRLSEAEHMIRSMPCYTDDVVWSTLLRSCRVHGDVDRGRWTAEQLLRLDPNSAGTHIALA 670

Query: 422 NTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           N +A   RW++   IR  ++  G+ K+ G SW+ VN  +
Sbjct: 671 NIYAAKGRWKEAAHIRKLMKSKGVIKERGWSWVNVNDKL 709



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 116/390 (29%), Positives = 198/390 (50%), Gaps = 11/390 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +  + ALKAC L         +H   ++ G ++ +F+ ++L+  Y+ V  I    ++F
Sbjct: 156 DQFMISVALKACGLGVNICFGELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVF 215

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVL--SACSSLVS 123
             +   +VVSWT II+GL   G++ EA+  F  +    V  +++T    L  SA SSL+ 
Sbjct: 216 KKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLH 275

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
           H  GKAIH  +++   + +  + N +   Y +CG       LF KM   +VVSWTT+I  
Sbjct: 276 H--GKAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITT 333

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           Y ++G  + AV  F+ M K+    PN+ T   V+SAC++++   +G+ +H ++  R  L 
Sbjct: 334 YVQKGEEEHAVEAFKRMRKSN-VSPNKYTFAAVISACANLAIAKWGEQIHGHV-LRLGLV 391

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
            +  V N+++ +Y K G +  A  VF+ +  KD ISWST+I+  +  G  ++A    S M
Sbjct: 392 DALSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWM 451

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
                 P++    +++S C    L++QG  +   +  +      M H A ++ MY + G 
Sbjct: 452 RREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLCIGIDHEAMVHSA-LISMYSKCGS 510

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           +EEA      M I    S W A++N    H
Sbjct: 511 VEEASKIFNGMKINNIIS-WTAMINGYAEH 539



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 167/341 (48%), Gaps = 29/341 (8%)

Query: 42  LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG 101
           +H++   NS L   V    +  +  +F+ +   D +SWTT+I+G        EA+ +F  
Sbjct: 87  VHNMLELNSELKQLVKQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSN 146

Query: 102 IDVKPNANT---LVSV-LSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCG 157
           + V+P       ++SV L AC   V+   G+ +H  S+++   N++ + +A++D Y++ G
Sbjct: 147 MWVQPGLQRDQFMISVALKACGLGVNICFGELLHGFSVKSGLINSVFVSSALIDMYMKVG 206

Query: 158 SLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVL 217
            +     +F KM KRNVVSWT +I G    G+  EA+  F EM  +K    +  T    L
Sbjct: 207 KIEQGCRVFKKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGY-DSHTFAIAL 265

Query: 218 SACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK 277
            A +  S L  GK +H+  + +     S+ V N +  MY KCG     +++F  +   D 
Sbjct: 266 KASADSSLLHHGKAIHTQ-TIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDV 324

Query: 278 ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS-----------HGG 326
           +SW+T+I+     G    A++ F  M  + V P+  TF A+ISAC+           HG 
Sbjct: 325 VSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGH 384

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           ++  GL+   A+S    IV           +Y ++GLL+ A
Sbjct: 385 VLRLGLV--DALSVANSIVT----------LYSKSGLLKSA 413


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 155/487 (31%), Positives = 267/487 (54%), Gaps = 36/487 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  TF+  L   S         +IH  ++++G    +F+ +SL+  Y  +  +  A Q+F
Sbjct: 137 NRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVF 196

Query: 69  NSVVFPDVV-------------------------------SWTTIISGLSKCGFHKEAID 97
           + V   +VV                               SWTT+I+GL + G   EA+D
Sbjct: 197 DEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMD 256

Query: 98  MFCGIDVKPNA---NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
           +F  +  +  A    T  SVL+AC  L + K GK IH   +R+   +N+ + +A++D Y 
Sbjct: 257 LFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYC 316

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           +C S+     +F +M  +NVVSWT M+ GY + GF +EAV VF +M++    EP++ TL 
Sbjct: 317 KCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNG-IEPDDFTLG 375

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
           +V+S+C+++++L  G   H        +S    V NA+I +Y KCG +  + Q+F+ +++
Sbjct: 376 SVISSCANLASLEEGAQFHCQALVSGLISFIT-VSNALITLYGKCGSIEDSNQLFDEMSF 434

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           +D++SW+ ++SG A  G   + + LF  M++  + PD VTFIA++SACS  GLV++G   
Sbjct: 435 RDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQY 494

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F++M   + I+P   HY C++D++GRAG LEEA+ FI +MP   +   W  LL++CR++ 
Sbjct: 495 FESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYG 554

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           N+E+     + L+     +   + L+S+ +A   +W +  ++R  +R  G +K+ G SWI
Sbjct: 555 NEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSWI 614

Query: 455 EVNPSIF 461
           +    ++
Sbjct: 615 KYKSKVY 621



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 117/462 (25%), Positives = 213/462 (46%), Gaps = 79/462 (17%)

Query: 18  KACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 77
           K C       +A ++H  +I+     + F+ N+L++ Y  + +I  A  +F+ +  P+  
Sbjct: 13  KLCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSF 72

Query: 78  SWTTIISGLSKCGFHKEAIDMFCGIDVKPNA-----NTLV-------SVLSACSS----- 120
           SW T++S  SK G      ++F    + PN      N+L+       SV+ A  +     
Sbjct: 73  SWNTMLSAYSKSGDLSTMQEIF---SIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMM 129

Query: 121 -----------------LVSHK----LGKAIHAHSLR----------------------- 136
                            LVS +    LG+ IH   ++                       
Sbjct: 130 KDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLV 189

Query: 137 --------NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
                    + E N+++ N ++   +R G +     LF  M +R+ +SWTTMI G  + G
Sbjct: 190 SVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNG 249

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSNL 247
              EA+ +F++M +   A  ++ T  +VL+AC  + AL  GK +H+  I + Y+ +V   
Sbjct: 250 LEAEAMDLFRDMRQEGMA-MDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNV--F 306

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           VG+A+++MY KC  V  A  VF  +A K+ +SW+ ++ G   NG   +A+++F  M  N 
Sbjct: 307 VGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNG 366

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           + PDD T  ++IS+C++   +++G   F   + V  ++  +     ++ +YG+ G +E++
Sbjct: 367 IEPDDFTLGSVISSCANLASLEEG-AQFHCQALVSGLISFITVSNALITLYGKCGSIEDS 425

Query: 368 EAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDRIRQDLVN 408
                EM    E S W AL++   +  + +E  D   + LV 
Sbjct: 426 NQLFDEMSFRDEVS-WTALVSGYAQFGKANETIDLFERMLVQ 466


>gi|357507465|ref|XP_003624021.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499036|gb|AES80239.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 632

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 152/442 (34%), Positives = 254/442 (57%), Gaps = 54/442 (12%)

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAI----DMFCGIDVKPNANTLVSVL 115
           ++ +A   F+ +    VVSW  ++SG ++ G  +E I    DM    +V+P+  T  +V+
Sbjct: 200 NLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVI 259

Query: 116 SACSSLVSHKLGKAIHAHSLRNLNEN-----NIILDNAILDFYIRCGSL----------- 159
           S+CSSL    L ++I    +R L++      N  +  A+LD + +CG+L           
Sbjct: 260 SSCSSLGDPCLSESI----VRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLG 315

Query: 160 -----------------------ASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSV 196
                                   S  +LF KMP+R+ VSW +MI GY + G   +A+ +
Sbjct: 316 VYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKL 375

Query: 197 FQEMEKTKEA-EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINM 255
           F+EM  ++++ +P+E T+V+V SAC  +  L  G +  S +   + + +S  V N++INM
Sbjct: 376 FEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWAVSILKVNH-IQISISVYNSLINM 434

Query: 256 YVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTF 315
           Y +CG +  A+ +F  +A +D +S++T+ISG A +G G ++++L S M  + + PD +T+
Sbjct: 435 YSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPDRITY 494

Query: 316 IALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP 375
           IA+++ACSH GL+D+G  LF+++       P + HYAC++DM GRAG LEEA   I+ MP
Sbjct: 495 IAILTACSHAGLLDEGQRLFESIK-----FPDVDHYACMIDMLGRAGRLEEAMKLIQSMP 549

Query: 376 IEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNK 435
           +E    ++G+LLNA  IH+  E+ +     L   +  + G +AL+SN +A A RW++ +K
Sbjct: 550 MEPHAGIYGSLLNATSIHKQVELGELAAAKLFKVEPHNSGNYALLSNIYASAGRWKEGDK 609

Query: 436 IRDEIRRMGLKKKTGCSWIEVN 457
           +RD +R+ G+KK TG SW+E N
Sbjct: 610 VRDTMRKQGVKKTTGLSWLEHN 631



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 169/377 (44%), Gaps = 69/377 (18%)

Query: 34  AHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHK 93
           AHV++ G+  D +++N +L  Y     I  A ++F+ +    V  W  +ISG  KCG  +
Sbjct: 108 AHVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEE 167

Query: 94  EAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFY 153
           EA  +F                        H +G              N+I    ++  +
Sbjct: 168 EASTLF------------------------HVMGD--------QEISRNVITWTTMITGH 195

Query: 154 IRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATL 213
            + G+L +    F KMP+R+VVSW  M+ GYA+ G  +E + +F +M      +P+E T 
Sbjct: 196 AKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTW 255

Query: 214 VNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML- 272
             V+S+CSS+      + +   +  +     +  V  A+++M+ KCG++  A ++F  L 
Sbjct: 256 ATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLG 315

Query: 273 ---------------AY------------------KDKISWSTVISGLAMNGCGRQALQL 299
                          AY                  +D +SW+++I+G   NG   +A++L
Sbjct: 316 VYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKL 375

Query: 300 FSLMII--NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
           F  MI   ++  PD+VT +++ SAC H G +  G      +  V  I   +  Y  +++M
Sbjct: 376 FEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWAVSILK-VNHIQISISVYNSLINM 434

Query: 358 YGRAGLLEEAEAFIREM 374
           Y R G +++A    +EM
Sbjct: 435 YSRCGSMQDAVLIFQEM 451



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 3/78 (3%)

Query: 45  IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID- 103
           I + NSL++ Y     +  A  IF  +   D+VS+ T+ISG ++ G   E+I++   +  
Sbjct: 425 ISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKMKE 484

Query: 104 --VKPNANTLVSVLSACS 119
             ++P+  T +++L+ACS
Sbjct: 485 DGIEPDRITYIAILTACS 502


>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
 gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 164/486 (33%), Positives = 254/486 (52%), Gaps = 42/486 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHL--HDIFIQNSLLHFYVTVKDIFSAHQ 66
           N  TF   L+ C      +K  +IH   +  G L      +   LL+ Y  +     A +
Sbjct: 2   NTQTFYFLLQKCG---SLEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQK 58

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVS 123
           +FN +  PD+VSWT +IS         +A  +F  +    ++P++  +V  +SAC     
Sbjct: 59  VFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKD 118

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFY------------------------------ 153
              G+ +H    R    ++ I+ NA++D Y                              
Sbjct: 119 LSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNG 178

Query: 154 -IRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEAT 212
            I+C  + +   +F +MP RN VSWT MI GY +       + +FQEM    +  P   T
Sbjct: 179 FIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVIT 238

Query: 213 LVNVLSACSSISALSFGKYVHSYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 271
           +V VLS C+ I A   G  VH Y++ T  DL V+  V NA+++MY K G + +A+++F  
Sbjct: 239 IVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVT--VNNALMDMYAKSGALVLALKIFQE 296

Query: 272 LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
           +  +D  SW+T+ISGLA++G G  AL+ FS M  + V P++VT ++++SACSH GLV +G
Sbjct: 297 MPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHAGLVVEG 356

Query: 332 LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACR 391
             LF+ M   + I P++QHY C+VD+ GRAGLL EA+  I  MPI+ +  +W +LL+AC 
Sbjct: 357 RSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACL 416

Query: 392 IHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGC 451
           +H N  + +   + ++  +    G + L+ N +  A RWED  K R  +R   +KKK GC
Sbjct: 417 VHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVKKKPGC 476

Query: 452 SWIEVN 457
           SW+EVN
Sbjct: 477 SWVEVN 482


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 149/441 (33%), Positives = 254/441 (57%), Gaps = 7/441 (1%)

Query: 25  PHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIIS 84
           P+ K L  ++   E+ H +++ + N+ +  Y     +  AH++F S+    V SW  +I 
Sbjct: 409 PNLKELHCYSLKQEFVHNNEL-VANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIG 467

Query: 85  GLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNEN 141
           G S+    + ++D +  +    + P+  T+ S+LSACS + S KLGK +H   +RN  E 
Sbjct: 468 GYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLER 527

Query: 142 NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME 201
           +  +  ++L  YI CG L++   LF  M  + +VSW TM+ GY + GF + A+S+F++M 
Sbjct: 528 DSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQM- 586

Query: 202 KTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGD 261
                +P E ++++V  ACS + +L  G+  H Y + +  L  +  +  +VI+MY K G 
Sbjct: 587 VLYGVQPCEISMMSVFGACSLLPSLRLGREAHGY-ALKCLLEDNAFIACSVIDMYAKNGS 645

Query: 262 VGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISA 321
           V  + +VFN L  +   SW+ ++ G  ++G  ++A++LF  M      PD++TF+ +++A
Sbjct: 646 VMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTA 705

Query: 322 CSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA-EAFIREMPIEAEW 380
           C+H GLV +GL     M T++ + P ++HYACV+DM  RAG L+EA +    EM  E   
Sbjct: 706 CNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMSEEPGV 765

Query: 381 SVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEI 440
            +W  LL++CRIH+N EM ++I   L   +      + L+SN +AG+ +W++  K+R  +
Sbjct: 766 GIWNFLLSSCRIHKNLEMGEKIAAKLFVSEPEKPENYVLLSNLYAGSGKWDEVRKVRQRM 825

Query: 441 RRMGLKKKTGCSWIEVNPSIF 461
           + M L+K  GCSWIE+N  +F
Sbjct: 826 KEMSLRKDAGCSWIELNGKVF 846



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 162/324 (50%), Gaps = 8/324 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +++TF   +KAC+     Q  L +H  V++   + D+F+ N+L+ FY T   +  A ++F
Sbjct: 183 DNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDALRVF 242

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK-------PNANTLVSVLSACSSL 121
             +   ++VSW ++I   S  G  +E   +   +  K       P+  TL +VL  C+  
Sbjct: 243 KIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCARD 302

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
               +GK +H  +++   +  ++++NA++D Y +CG +     +F     +NVVSW TM+
Sbjct: 303 REIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTMV 362

Query: 182 GGYAERGFCKEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           GG++  G   +   + ++M     +   +E T++N +  C   S L   K +H Y   + 
Sbjct: 363 GGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNLKELHCYSLKQE 422

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
            +  + LV NA +  Y KCG +  A +VF  +  K   SW+ +I G + +   R +L  +
Sbjct: 423 FVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAY 482

Query: 301 SLMIINAVFPDDVTFIALISACSH 324
             M  + + PD  T  +L+SACS 
Sbjct: 483 FQMKSSGLLPDLFTVCSLLSACSQ 506



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 141/261 (54%), Gaps = 4/261 (1%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +T    L ACS     +   E+H  +I      D F+  SLL  Y+   ++ +AH +F++
Sbjct: 495 FTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDA 554

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLG 127
           +    +VSW T+++G  + GF + A+ +F  +    V+P   +++SV  ACS L S +LG
Sbjct: 555 MEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLG 614

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           +  H ++L+ L E+N  +  +++D Y + GS+     +F  + +R+V SW  M+ GY   
Sbjct: 615 REAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIH 674

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G  KEA+ +F+EM++T    P+E T + VL+AC+    +  G      + T + ++ +  
Sbjct: 675 GRAKEAIKLFEEMQRTGHC-PDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLK 733

Query: 248 VGNAVINMYVKCGDVGIAIQV 268
               VI+M V+ G +  A+++
Sbjct: 734 HYACVIDMLVRAGKLDEALKI 754



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 149/306 (48%), Gaps = 11/306 (3%)

Query: 27  QKALEIHAHVIEYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISG 85
           Q   +IH  V E   L +D  +   ++  Y        +  +F+++   ++  W  +IS 
Sbjct: 98  QLGRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISS 157

Query: 86  LSKCGFHKEAIDMFCGIDVK----PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNEN 141
            S+   +   ++MF  +  +    P+  T   V+ AC+ +   ++G A+H   ++     
Sbjct: 158 YSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVE 217

Query: 142 NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVF-QEM 200
           ++ + NA++ FY   GS++    +F  MP+RN+VSW +MI  +++ G  +E   +  Q M
Sbjct: 218 DVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMM 277

Query: 201 EKTKEA--EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVK 258
           EK  E    P+ ATL  VL  C+    +  GK VH  ++ +  L    +V NA+++MY K
Sbjct: 278 EKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHG-LAMKLSLDKEVVVNNALMDMYSK 336

Query: 259 CGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA--VFPDDVTFI 316
           CG +  A  +F +   K+ +SW+T++ G +  G   +   L   M+     +  D+VT +
Sbjct: 337 CGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTIL 396

Query: 317 ALISAC 322
             +  C
Sbjct: 397 NAVPVC 402



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 3/163 (1%)

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285
           +  G+ +H  +S    LS  +++   VI MY  CG    +  VF+ L  K+   W+ VIS
Sbjct: 97  IQLGRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVIS 156

Query: 286 GLAMNGCGRQALQLFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 344
             + N      L++F  MI  + + PD+ TF  ++ AC+    V  GL +   +     +
Sbjct: 157 SYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAV-HGLVVKTRL 215

Query: 345 VPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           V  +     +V  YG  G + +A    + MP E     W +++
Sbjct: 216 VEDVFVSNALVSFYGTNGSVSDALRVFKIMP-ERNLVSWNSMI 257


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 150/464 (32%), Positives = 262/464 (56%), Gaps = 13/464 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML      N +TF  ALK+C+         + H  + + G + + F+Q  L+  Y     
Sbjct: 31  MLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLISMYCKGSL 90

Query: 61  IFSAHQIFNSVVFPD--VVSWTTIISGL---SKCGFHKEAIDMFCGID---VKPNANTLV 112
           + +A ++F          V +  ++SG    SKC    +A+ +F  ++   V  N+ TL+
Sbjct: 91  VDNARKVFEENFHSRKLTVCYNALVSGYVSNSKC---SDAVLLFRQMNEEGVPVNSVTLL 147

Query: 113 SVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKR 172
            ++ AC S ++ +LG ++H  +L+   ++++ + N  +  Y++CGS+     LF +MP +
Sbjct: 148 GLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVK 207

Query: 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYV 232
            ++SW  M+ GYA+ G     + +++ M+      P+  TLV VLS+C+++ A S G  V
Sbjct: 208 GLISWNAMVSGYAQNGLATNVLELYRNMDMNG-VHPDPVTLVGVLSSCANLGAQSVGHEV 266

Query: 233 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
              +      + +  + NA+INMY +CG++  A  VF+ +  +  +SW+ +I G  M+G 
Sbjct: 267 EFKMQAS-GFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGH 325

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
           G  A+QLF  MI + + PD   F+ ++SACSH GL DQGL  FK M   Y++ P  +HY+
Sbjct: 326 GEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYS 385

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           C+VD+ GRAG L+EA+  I  MPI+ + +VWGALL AC+IH+N E+ +   + ++  +  
Sbjct: 386 CMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPE 445

Query: 413 SVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           ++G + L+SN ++ A+  +   +IR  ++   LKK  GCS++E+
Sbjct: 446 NIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVEL 489



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 167/338 (49%), Gaps = 17/338 (5%)

Query: 79  WTTIISGLSK-CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHS 134
           W T +  L+K C F  +A+ ++  +     +PNA T    L +C++L    LG   H   
Sbjct: 8   WNTQLRELAKRCQF-LQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQI 66

Query: 135 LRNLNENNIILDNAILDFYIRCGSLASCGYLFVK--MPKRNVVSWTTMIGGYAERGFCKE 192
            +        +   ++  Y +   + +   +F +    ++  V +  ++ GY     C +
Sbjct: 67  TKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSD 126

Query: 193 AVSVFQEMEKTKEAEP-NEATLVNVLSACSSISALSFGKYVH-SYISTRYDLSVSNLVGN 250
           AV +F++M   +E  P N  TL+ ++ AC S   L  G  +H S +   +D  VS  V N
Sbjct: 127 AVLLFRQM--NEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVS--VVN 182

Query: 251 AVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP 310
             I MY+KCG V  A ++F+ +  K  ISW+ ++SG A NG     L+L+  M +N V P
Sbjct: 183 CFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHP 242

Query: 311 DDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEA 369
           D VT + ++S+C++ G    G  + FK  ++ +   P + +   +++MY R G L +A+A
Sbjct: 243 DPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNN--ALINMYARCGNLTKAQA 300

Query: 370 FIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLV 407
               MP E     W A++    +H + E+  ++ ++++
Sbjct: 301 VFDGMP-ERTLVSWTAIIGGYGMHGHGEIAVQLFKEMI 337


>gi|124360491|gb|ABN08501.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 575

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 152/442 (34%), Positives = 254/442 (57%), Gaps = 54/442 (12%)

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAI----DMFCGIDVKPNANTLVSVL 115
           ++ +A   F+ +    VVSW  ++SG ++ G  +E I    DM    +V+P+  T  +V+
Sbjct: 143 NLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVI 202

Query: 116 SACSSLVSHKLGKAIHAHSLRNLNEN-----NIILDNAILDFYIRCGSL----------- 159
           S+CSSL    L ++I    +R L++      N  +  A+LD + +CG+L           
Sbjct: 203 SSCSSLGDPCLSESI----VRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLG 258

Query: 160 -----------------------ASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSV 196
                                   S  +LF KMP+R+ VSW +MI GY + G   +A+ +
Sbjct: 259 VYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKL 318

Query: 197 FQEMEKTKEA-EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINM 255
           F+EM  ++++ +P+E T+V+V SAC  +  L  G +  S +   + + +S  V N++INM
Sbjct: 319 FEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWAVSILKVNH-IQISISVYNSLINM 377

Query: 256 YVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTF 315
           Y +CG +  A+ +F  +A +D +S++T+ISG A +G G ++++L S M  + + PD +T+
Sbjct: 378 YSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPDRITY 437

Query: 316 IALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP 375
           IA+++ACSH GL+D+G  LF+++       P + HYAC++DM GRAG LEEA   I+ MP
Sbjct: 438 IAILTACSHAGLLDEGQRLFESIK-----FPDVDHYACMIDMLGRAGRLEEAMKLIQSMP 492

Query: 376 IEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNK 435
           +E    ++G+LLNA  IH+  E+ +     L   +  + G +AL+SN +A A RW++ +K
Sbjct: 493 MEPHAGIYGSLLNATSIHKQVELGELAAAKLFKVEPHNSGNYALLSNIYASAGRWKEGDK 552

Query: 436 IRDEIRRMGLKKKTGCSWIEVN 457
           +RD +R+ G+KK TG SW+E N
Sbjct: 553 VRDTMRKQGVKKTTGLSWLEHN 574



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 170/377 (45%), Gaps = 69/377 (18%)

Query: 34  AHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHK 93
           AHV++ G+  D +++N +L  Y     I  A ++F+ +    V  W  +ISG  KCG  +
Sbjct: 51  AHVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEE 110

Query: 94  EAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFY 153
           EA  +F                        H +G    +         N+I    ++  +
Sbjct: 111 EASTLF------------------------HVMGDQEIS--------RNVITWTTMITGH 138

Query: 154 IRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATL 213
            + G+L +    F KMP+R+VVSW  M+ GYA+ G  +E + +F +M      +P+E T 
Sbjct: 139 AKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTW 198

Query: 214 VNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML- 272
             V+S+CSS+      + +   +  +     +  V  A+++M+ KCG++  A ++F  L 
Sbjct: 199 ATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLG 258

Query: 273 ---------------AY------------------KDKISWSTVISGLAMNGCGRQALQL 299
                          AY                  +D +SW+++I+G   NG   +A++L
Sbjct: 259 VYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKL 318

Query: 300 FSLMII--NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
           F  MI   ++  PD+VT +++ SAC H G +  G      +  V  I   +  Y  +++M
Sbjct: 319 FEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWAVSILK-VNHIQISISVYNSLINM 377

Query: 358 YGRAGLLEEAEAFIREM 374
           Y R G +++A    +EM
Sbjct: 378 YSRCGSMQDAVLIFQEM 394



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 3/78 (3%)

Query: 45  IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID- 103
           I + NSL++ Y     +  A  IF  +   D+VS+ T+ISG ++ G   E+I++   +  
Sbjct: 368 ISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKMKE 427

Query: 104 --VKPNANTLVSVLSACS 119
             ++P+  T +++L+ACS
Sbjct: 428 DGIEPDRITYIAILTACS 445


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 150/461 (32%), Positives = 255/461 (55%), Gaps = 11/461 (2%)

Query: 4   CPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFS 63
            P+   ++ F   + AC+ +     A +IH H+       D F+ NSL+H Y     +  
Sbjct: 48  APTPRVYHAF---ITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVE 104

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 120
           AH++F+ +   D+VSWT++I+G ++     EAI +  G+     KPN  T  S+L A  +
Sbjct: 105 AHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGA 164

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
                +G  IHA +++     ++ + +A+LD Y RCG +     +F K+  +N VSW  +
Sbjct: 165 YADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNAL 224

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTR 239
           I G+A +G  + A+ VF EM++    E    T  ++ S  + I AL  GK+VH++ + +R
Sbjct: 225 ISGFARKGDGETALMVFAEMQRNG-FEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSR 283

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
             L+    VGN +++MY K G +  A +VF  +  KD ++W+++++  A  G G++A+  
Sbjct: 284 QKLTA--FVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSH 341

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
           F  M  + ++ + +TF+ +++ACSHGGLV +G   F  M   Y + P+++HY  VVD+ G
Sbjct: 342 FEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFD-MIKEYNLEPEIEHYVTVVDLLG 400

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFAL 419
           RAGLL  A  FI +MP+E   +VWGALL ACR+H+N ++       +        G   L
Sbjct: 401 RAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVL 460

Query: 420 MSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           + N +A    W+   ++R  ++  G+KK+  CSW+E+  S+
Sbjct: 461 LYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIGNSV 501



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 149/294 (50%), Gaps = 4/294 (1%)

Query: 96  IDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIR 155
           +D     ++ P      + ++AC+   +    + IH H   +  E +  LDN+++  Y +
Sbjct: 39  LDHLDSGELAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCK 98

Query: 156 CGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVN 215
           CGS+     +F KM K+++VSWT++I GYA+     EA+ +   M K +  +PN  T  +
Sbjct: 99  CGSVVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGR-FKPNGFTFAS 157

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           +L A  + +    G  +H+ ++ + D      VG+A+++MY +CG + +A  VF+ L  K
Sbjct: 158 LLKAAGAYADSGIGGQIHA-LAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSK 216

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILF 335
           + +SW+ +ISG A  G G  AL +F+ M  N       T+ ++ S  +  G ++QG  + 
Sbjct: 217 NGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVH 276

Query: 336 KAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
             M    + +        ++DMY ++G + +A   + E  +  +   W ++L A
Sbjct: 277 AHMVKSRQKLTAFVG-NTMLDMYAKSGSMIDARK-VFERVLNKDLVTWNSMLTA 328


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 153/453 (33%), Positives = 250/453 (55%), Gaps = 5/453 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L AC+ A    + + IH++ I++G   ++F+ N L+  Y     +    ++F+ +
Sbjct: 249 TVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRM 308

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
              D++SW +II           AI +F  +    ++P+  TL+S+ S  S L   +  +
Sbjct: 309 YVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACR 368

Query: 129 AIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           ++   +LR      +I + NA++  Y + G + S   +F  +P  +V+SW T+I GYA+ 
Sbjct: 369 SVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQN 428

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           GF  EA+ ++  ME+  E   N+ T V+VL ACS   AL  G  +H  +  +  L +   
Sbjct: 429 GFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRL-LKNGLYLDVF 487

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V  ++ +MY KCG +  A+ +F  +   + + W+T+I+    +G G +A+ LF  M+   
Sbjct: 488 VVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEG 547

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           V PD +TF+ L+SACSH GLVD+G   F+ M T Y I P ++HY C+VDMYGRAG LE A
Sbjct: 548 VKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETA 607

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
             FI+ M ++ + S+WGALL+ACR+H N ++     + L   +   VG   L+SN +A A
Sbjct: 608 LKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASA 667

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            +WE  ++IR      GL+K  G S +EV+  +
Sbjct: 668 GKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKV 700



 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 116/378 (30%), Positives = 203/378 (53%), Gaps = 11/378 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           MLS   + ++ TF   LKAC       K   IH   +++G + D+++  SL+H Y   K 
Sbjct: 144 MLSSGLTPDYRTFPSVLKACRTVIDGNK---IHCLALKFGFMWDVYVAASLIHLYSRYKA 200

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSS 120
           + +A  +F+ +   D+ SW  +ISG  + G  KEA+ +  G+    ++ T+VS+LSAC+ 
Sbjct: 201 VGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM-DSVTVVSLLSACTE 259

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
                 G  IH++S+++  E+ + + N ++D Y   G L  C  +F +M  R+++SW ++
Sbjct: 260 AGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSI 319

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           I  Y        A+S+FQEM  ++  +P+  TL+++ S  S +  +   + V  +   + 
Sbjct: 320 IKAYELNEQPLRAISLFQEMRLSR-IQPDCLTLISLASILSQLGDIRACRSVQGFTLRKG 378

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
                  +GNAV+ MY K G V  A  VFN L   D ISW+T+ISG A NG   +A++++
Sbjct: 379 WFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMY 438

Query: 301 SLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAM--STVYEIVPQMQHYACVVDM 357
           ++M     +  +  T+++++ ACS  G + QG+ L   +  + +Y  V  +   A   DM
Sbjct: 439 NIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLA---DM 495

Query: 358 YGRAGLLEEAEAFIREMP 375
           YG+ G LE+A +   ++P
Sbjct: 496 YGKCGRLEDALSLFYQIP 513



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 173/358 (48%), Gaps = 23/358 (6%)

Query: 27  QKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGL 86
           Q A  +HA ++    + ++ I   L++ Y  + ++  A   F+ +   DV +W  +ISG 
Sbjct: 68  QSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGY 127

Query: 87  SKCGFHKEAIDMFC----GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN 142
            + G   E I  F        + P+  T  SVL AC +++    G  IH  +L+     +
Sbjct: 128 GRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFGFMWD 184

Query: 143 IILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202
           + +  +++  Y R  ++ +   LF +MP R++ SW  MI GY + G  KEA+++   +  
Sbjct: 185 VYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRA 244

Query: 203 TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 262
                 +  T+V++LSAC+     + G  +HSY S ++ L     V N +I++Y + G +
Sbjct: 245 M-----DSVTVVSLLSACTEAGDFNRGVTIHSY-SIKHGLESELFVSNKLIDLYAEFGRL 298

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
               +VF+ +  +D ISW+++I    +N    +A+ LF  M ++ + PD +T I+L S  
Sbjct: 299 RDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASIL 358

Query: 323 SHGGLVD-----QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP 375
           S  G +      QG  L K        +  +     VV MY + GL++ A A    +P
Sbjct: 359 SQLGDIRACRSVQGFTLRKGW-----FLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 411



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 138/295 (46%), Gaps = 17/295 (5%)

Query: 113 SVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKR 172
           ++   C++L S    K +HA  + +    N+ +   +++ Y   G++A   + F  +  R
Sbjct: 59  TLFRYCTNLQS---AKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNR 115

Query: 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYV 232
           +V +W  MI GY   G   E +  F     +    P+  T  +VL AC ++     G  +
Sbjct: 116 DVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNKI 172

Query: 233 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
           H  ++ ++       V  ++I++Y +   VG A  +F+ +  +D  SW+ +ISG   +G 
Sbjct: 173 HC-LALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGN 231

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
            ++AL L + +       D VT ++L+SAC+  G  ++G+ +  + S  + +  ++    
Sbjct: 232 AKEALTLSNGLRA----MDSVTVVSLLSACTEAGDFNRGVTI-HSYSIKHGLESELFVSN 286

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH----RNDEMFDRIR 403
            ++D+Y   G L + +     M +    S W +++ A  ++    R   +F  +R
Sbjct: 287 KLIDLYAEFGRLRDCQKVFDRMYVRDLIS-WNSIIKAYELNEQPLRAISLFQEMR 340



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 3/114 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T+   L ACS A   ++ +++H  +++ G   D+F+  SL   Y     +  A  +F
Sbjct: 450 NQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLF 509

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 119
             +   + V W T+I+     G  ++A+ +F  +    VKP+  T V++LSACS
Sbjct: 510 YQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACS 563


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 163/486 (33%), Positives = 257/486 (52%), Gaps = 42/486 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    + AC+     +   ++ +++ E G      + N+L+  Y+   DI +A QIF
Sbjct: 230 NPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIF 289

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID------VKPNANTLVSVLSACSSLV 122
           +     ++V + TI+S       H+ A D+   +D       +P+  T++S ++AC+ L 
Sbjct: 290 DECANKNLVMYNTIMSNYV---HHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLG 346

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP------------ 170
              +GK+ HA+ LRN  E    + NAI+D Y++CG   +   +F  MP            
Sbjct: 347 DLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIA 406

Query: 171 -------------------KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEA 211
                              +R++VSW TMIG   +    +EA+ +F+EM+  +    +  
Sbjct: 407 GLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQ-NQGIPGDRV 465

Query: 212 TLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 271
           T+V + SAC  + AL   K+V +YI  + D+ V   +G A+++M+ +CGD   A+ VF  
Sbjct: 466 TMVGIASACGYLGALDLAKWVCTYIE-KNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKR 524

Query: 272 LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
           +  +D  +W+  I  +AM G    A++LF+ M+   V PDDV F+AL++ACSHGG VDQG
Sbjct: 525 MEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQG 584

Query: 332 LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACR 391
             LF +M   + I P + HY C+VD+ GRAGLLEEA   I+ MPIE    VWG+LL ACR
Sbjct: 585 RQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACR 644

Query: 392 IHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGC 451
            H+N E+     + L       VG   L+SN +A A +W D  ++R +++  G++K  G 
Sbjct: 645 KHKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGS 704

Query: 452 SWIEVN 457
           S IEV 
Sbjct: 705 SSIEVQ 710



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 121/439 (27%), Positives = 219/439 (49%), Gaps = 44/439 (10%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YTF   L ACS      + +++H  V++ G   DIF+ NSL+HFY     +    ++F
Sbjct: 129 DKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLF 188

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           + ++  +VVSWT++I+G S     KEA+ +F  +    V+PN  T+V V+SAC+ L   +
Sbjct: 189 DGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLE 248

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LGK + ++      E + I+ NA++D Y++CG + +   +F +   +N+V + T++  Y 
Sbjct: 249 LGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYV 308

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
              +  + + +  EM + K   P++ T+++ ++AC+ +  LS GK  H+Y+  R  L   
Sbjct: 309 HHEWASDVLVILDEMLQ-KGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYV-LRNGLEGW 366

Query: 246 NLVGNAVINMYVKC-------------------------------GDVGIAIQVFNMLAY 274
           + + NA+I+MY+KC                               GD+ +A ++F+ +  
Sbjct: 367 DNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLE 426

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           +D +SW+T+I  L       +A++LF  M    +  D VT + + SAC + G +D    L
Sbjct: 427 RDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALD----L 482

Query: 335 FKAMSTVYE---IVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACR 391
            K + T  E   I   +Q    +VDM+ R G    A    + M  + + S W A +    
Sbjct: 483 AKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRME-KRDVSAWTAAIGVMA 541

Query: 392 IHRNDEMFDRIRQDLVNKK 410
           +  N E    +  +++ +K
Sbjct: 542 MEGNTEGAIELFNEMLEQK 560



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 109/374 (29%), Positives = 190/374 (50%), Gaps = 18/374 (4%)

Query: 79  WTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSL 135
           +  +I G +  G   +AI ++  +    + P+  T   +LSACS +++   G  +H   L
Sbjct: 98  YNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVL 157

Query: 136 RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVS 195
           +   E +I + N+++ FY  CG +     LF  M +RNVVSWT++I GY+ R   KEAVS
Sbjct: 158 KMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVS 217

Query: 196 VFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINM 255
           +F +M +    EPN  T+V V+SAC+ +  L  GK V SYIS    + +S ++ NA+++M
Sbjct: 218 LFFQMGEAG-VEPNPVTMVCVISACAKLKDLELGKKVCSYIS-ELGMELSTIMVNALVDM 275

Query: 256 YVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTF 315
           Y+KCGD+  A Q+F+  A K+ + ++T++S    +      L +   M+     PD VT 
Sbjct: 276 YMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTM 335

Query: 316 IALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA----CVVDMYGRAGLLEEAEAFI 371
           ++ I+AC+  G +  G       S  Y +   ++ +      ++DMY + G  E A    
Sbjct: 336 LSTIAACAQLGDLSVG-----KSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVF 390

Query: 372 REMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWE 431
             MP +   + W +L+       + E+  RI  +++ +  VS  T   M         +E
Sbjct: 391 EHMPNKTVVT-WNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNT---MIGALVQVSMFE 446

Query: 432 DTNKIRDEIRRMGL 445
           +  ++  E++  G+
Sbjct: 447 EAIELFREMQNQGI 460


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 154/454 (33%), Positives = 253/454 (55%), Gaps = 6/454 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L AC+ A    + + IH++ I++G   ++F+ N L+  Y     +    ++F+ +
Sbjct: 249 TVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRM 308

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
              D++SW +II           AI +F  +    ++P+  TL+S+ S  S L   +  +
Sbjct: 309 YVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACR 368

Query: 129 AIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           ++   +LR      +I + NA++  Y + G + S   +F  +P ++V+SW T+I GYA+ 
Sbjct: 369 SVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQN 428

Query: 188 GFCKEAVSVFQEMEKTK-EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
           GF  EA+ ++  ME+   E   N+ T V+VL ACS   AL  G  +H  +  +  L +  
Sbjct: 429 GFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRL-LKNGLYLDV 487

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            VG ++ +MY KCG +  A+ +F  +   + + W+T+I+    +G G +A+ LF  M+  
Sbjct: 488 FVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDE 547

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
            V PD +TF+ L+SACSH GLVD+G   F+ M T Y I P ++HY C+VD+YGRAG LE 
Sbjct: 548 GVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEI 607

Query: 367 AEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAG 426
           A  FI+ MP++ + S+WGALL+ACR+H N ++     + L   +   VG   L+SN +A 
Sbjct: 608 ALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYAS 667

Query: 427 ADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           A +WE  ++IR      GL+K  G S +EV+  +
Sbjct: 668 AGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKV 701



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/379 (30%), Positives = 201/379 (53%), Gaps = 12/379 (3%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           MLS     ++ TF   LKAC       K   IH   +++G + D+++  SL+H Y     
Sbjct: 144 MLSSGLQPDYRTFPSVLKACRNVTDGNK---IHCLALKFGFMWDVYVAASLIHLYCRYGA 200

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSS 120
           + +A  +F+ +   D+ SW  +ISG  + G  KEA+ +  G+    ++ T+VS+LSAC+ 
Sbjct: 201 VVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRAM-DSVTVVSLLSACTE 259

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
                 G  IH++S+++  E+ + + N ++D Y   GSL  C  +F +M  R+++SW ++
Sbjct: 260 AGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSI 319

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           I  Y        A+ +FQEM  ++  +P+  TL+++ S  S +  +   + V  +   + 
Sbjct: 320 IKAYELNEQPLRAILLFQEMRLSR-IQPDCLTLISLASILSQLGEIRACRSVQGFTLRKG 378

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
                  +GNAV+ MY K G V  A  VFN L  KD ISW+T+ISG A NG   +A++++
Sbjct: 379 WFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMY 438

Query: 301 SLMIINA--VFPDDVTFIALISACSHGGLVDQGLILFKAM--STVYEIVPQMQHYACVVD 356
           ++M      +  +  T+++++ ACS  G + QG+ L   +  + +Y  V      A   D
Sbjct: 439 NIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLA---D 495

Query: 357 MYGRAGLLEEAEAFIREMP 375
           MYG+ G L++A +   ++P
Sbjct: 496 MYGKCGRLDDALSLFYQIP 514



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 175/358 (48%), Gaps = 23/358 (6%)

Query: 27  QKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGL 86
           Q A  +HA ++    + ++ I   L++ Y  + ++  A   F+ +   DV +W  +ISG 
Sbjct: 68  QSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGY 127

Query: 87  SKCGFHKEAIDMFC----GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN 142
            + G+  E I  F        ++P+  T  SVL AC ++     G  IH  +L+     +
Sbjct: 128 GRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTD---GNKIHCLALKFGFMWD 184

Query: 143 IILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202
           + +  +++  Y R G++ +   LF +MP R++ SW  MI GY + G  KEA+++   +  
Sbjct: 185 VYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRA 244

Query: 203 TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 262
                 +  T+V++LSAC+     + G  +HSY S ++ L     V N +I++Y + G +
Sbjct: 245 M-----DSVTVVSLLSACTEAGDFNRGVTIHSY-SIKHGLESELFVSNKLIDLYAEFGSL 298

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
               +VF+ +  +D ISW+++I    +N    +A+ LF  M ++ + PD +T I+L S  
Sbjct: 299 KDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASIL 358

Query: 323 SHGGLVD-----QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP 375
           S  G +      QG  L K        +  +     VV MY + GL++ A A    +P
Sbjct: 359 SQLGEIRACRSVQGFTLRKGW-----FLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 411



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 134/277 (48%), Gaps = 13/277 (4%)

Query: 113 SVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKR 172
           ++   C++L S    K +HA  + +    N+ +   +++ Y   G++A   Y F  +  R
Sbjct: 59  TLFRYCTNLQS---AKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNR 115

Query: 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYV 232
           +V +W  MI GY   G+  E +  F     +   +P+  T  +VL AC +++    G  +
Sbjct: 116 DVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTD---GNKI 172

Query: 233 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
           H  ++ ++       V  ++I++Y + G V  A  +F+ +  +D  SW+ +ISG   +G 
Sbjct: 173 HC-LALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGN 231

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
            ++AL L   +       D VT ++L+SAC+  G  ++G+ +  + S  + +  ++    
Sbjct: 232 AKEALTLSDGLRA----MDSVTVVSLLSACTEAGDFNRGVTI-HSYSIKHGLESELFVSN 286

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
            ++D+Y   G L++ +     M +    S W +++ A
Sbjct: 287 KLIDLYAEFGSLKDCQKVFDRMYVRDLIS-WNSIIKA 322



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 3/116 (2%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S N  T+   L ACS A   ++ +++H  +++ G   D+F+  SL   Y     +  A  
Sbjct: 449 SANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALS 508

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 119
           +F  +   + V W T+I+     G  ++A+ +F  +    VKP+  T V++LSACS
Sbjct: 509 LFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACS 564


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 159/514 (30%), Positives = 264/514 (51%), Gaps = 74/514 (14%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N Y++T  + A +       A++++  V E      +  + +++  Y  V  I  A  IF
Sbjct: 426 NEYSWTTMIAAFAQCGRLDDAIQLYERVPE----QTVATKTAMMTAYAQVGRIQKARLIF 481

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK----------------------- 105
           + ++ P+VV+W  II+G ++ G  KEA D+F  + VK                       
Sbjct: 482 DEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALE 541

Query: 106 -----------PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
                      P+ ++  S LSAC+++   ++G+ IH+ +++   + N  + N ++  Y 
Sbjct: 542 LLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYA 601

Query: 155 RCGSLASCGYLFV-------------------------------KMPKRNVVSWTTMIGG 183
           +CG++    ++F                                KMPKR+VVSWT +I  
Sbjct: 602 KCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISA 661

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           Y + G  + A+ +F +M   +  +PN+ T+ ++LSAC ++ A+  G+  H+ I  +    
Sbjct: 662 YVQAGHGEVALDLFLDM-LARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALI-FKLGFD 719

Query: 244 VSNLVGNAVINMYVKCG-DVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
               VGN++I MY KCG + G    VF  +   D I+W+ V+ G A NG G++A+++F  
Sbjct: 720 TFLFVGNSLITMYFKCGYEDGFC--VFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQ 777

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
           M +  + PD ++F+ ++ ACSH GLVD+G   F +M+  Y I+P + HY C+VD+ GRAG
Sbjct: 778 MEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAG 837

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSN 422
            L EAEA I  MP++ +  +W ALL ACRIHRN E+  R+ + L         T+ L+SN
Sbjct: 838 YLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKSATYVLLSN 897

Query: 423 TFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
            FA    W+   +IR  ++  GL K+ G SWI+V
Sbjct: 898 LFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQV 931



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 101/389 (25%), Positives = 184/389 (47%), Gaps = 49/389 (12%)

Query: 37  IEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAI 96
           I+ G+  D+ + +++L+ Y     +  A   F ++   +  SWTT+I+  ++CG   +AI
Sbjct: 388 IKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAI 447

Query: 97  DMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRC 156
            ++  +  +  A T  ++++A + +   +  + I    L      N++  NAI+  Y + 
Sbjct: 448 QLYERVPEQTVA-TKTAMMTAYAQVGRIQKARLIFDEIL----NPNVVAWNAIIAGYTQN 502

Query: 157 GSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNV 216
           G L     LF KMP +N  SW  MI G+ +    +EA+ +  E+ ++    P++++  + 
Sbjct: 503 GMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSV-PSDSSFTSA 561

Query: 217 LSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD 276
           LSAC++I  +  G+ +HS ++ +     ++ V N +I+MY KCG+V     VF  +  KD
Sbjct: 562 LSACANIGDVEIGRVIHS-LAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKD 620

Query: 277 KISWSTVISGLAMN-------------------------------GCGRQALQLFSLMII 305
            +SW+++ISGL+ N                               G G  AL LF  M+ 
Sbjct: 621 TVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLA 680

Query: 306 NAVFPDDVTFIALISACSHGGLVDQG----LILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
             + P+ +T  +L+SAC + G +  G     ++FK     +  V        ++ MY + 
Sbjct: 681 RGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGN-----SLITMYFKC 735

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNAC 390
           G  E+      EMP E +   W A+L  C
Sbjct: 736 G-YEDGFCVFEEMP-EHDLITWNAVLVGC 762



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 171/346 (49%), Gaps = 19/346 (5%)

Query: 49  NSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVK 105
           NS++  Y     +  A ++F+ +   + VSW  +ISG      + EA D+F   C    +
Sbjct: 299 NSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVAR 358

Query: 106 PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYL 165
           P+ +  V VLSA + L   +L  ++   +++   E ++++ +AIL+ Y R GSL    + 
Sbjct: 359 PDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHF 418

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
           F  MP+RN  SWTTMI  +A+ G   +A+ +++ +      E   AT   +++A + +  
Sbjct: 419 FETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERV-----PEQTVATKTAMMTAYAQVGR 473

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285
           +   + +   I     L+ + +  NA+I  Y + G +  A  +F  +  K+  SW+ +I+
Sbjct: 474 IQKARLIFDEI-----LNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIA 528

Query: 286 GLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 345
           G   N   R+AL+L   +  +   P D +F + +SAC++ G V+ G ++    S   +  
Sbjct: 529 GFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIH---SLAIKTG 585

Query: 346 PQMQHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
            Q   Y    ++ MY + G +E+     R + ++   S W +L++ 
Sbjct: 586 CQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVS-WNSLISG 630



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 178/349 (51%), Gaps = 25/349 (7%)

Query: 43  HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI 102
            D+   NS+++ Y     +  A  +F++ V  ++ +WT +++G +K G  +EA ++F  +
Sbjct: 200 RDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYAKEGRIEEAREVFESM 259

Query: 103 DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSL-RNLNENNIILDNAILDFYIRCGSLAS 161
             +     +VS  +  S  V +  G   +A  L   + E N+   N+++  Y  C  ++ 
Sbjct: 260 TER----NVVSWNAMISGYVQN--GDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSE 313

Query: 162 CGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221
              LF +MP+RN VSW  MI GY       EA  VF +M +T  A P+++  V VLSA +
Sbjct: 314 ARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTV-ARPDQSIFVVVLSAIT 372

Query: 222 SISALSF-GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
            +  L   G      I T Y+  V  +VG+A++N Y + G + +A+  F  +  +++ SW
Sbjct: 373 GLDDLELIGSLRPIAIKTGYEGDV--VVGSAILNAYTRNGSLDLAMHFFETMPERNEYSW 430

Query: 281 STVISGLAMNGCGR--QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM 338
           +T+I+  A   CGR   A+QL+  +    V     T  A+++A +  G + +  ++F  +
Sbjct: 431 TTMIAAFAQ--CGRLDDAIQLYERVPEQTV----ATKTAMMTAYAQVGRIQKARLIFDEI 484

Query: 339 STVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
                + P +  +  ++  Y + G+L+EA+   ++MP++   S W A++
Sbjct: 485 -----LNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSAS-WAAMI 527



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 132/316 (41%), Gaps = 44/316 (13%)

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEM-------------E 201
           R G +     +F +M +R+VVSW +MI GY++ G   EA  +F                 
Sbjct: 183 RLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTG 242

Query: 202 KTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR---------YDLSVSNLVG-NA 251
             KE    EA    V  + +  + +S+   +  Y+             ++   N+   N+
Sbjct: 243 YAKEGRIEEAR--EVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNS 300

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD 311
           V+  Y  C  +  A ++F+ +  ++ +SW  +ISG        +A  +F  M      PD
Sbjct: 301 VVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPD 360

Query: 312 DVTFIALISACSHGGLVDQGLI---LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
              F+ ++SA +  GL D  LI      A+ T YE    +   + +++ Y R G L+ A 
Sbjct: 361 QSIFVVVLSAIT--GLDDLELIGSLRPIAIKTGYE--GDVVVGSAILNAYTRNGSLDLAM 416

Query: 369 AFIREMPIEAEWSVWGALLNA----CRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
            F   MP   E+S W  ++ A     R+    ++++R+ +        +V T   M   +
Sbjct: 417 HFFETMPERNEYS-WTTMIAAFAQCGRLDDAIQLYERVPEQ-------TVATKTAMMTAY 468

Query: 425 AGADRWEDTNKIRDEI 440
           A   R +    I DEI
Sbjct: 469 AQVGRIQKARLIFDEI 484



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 18/185 (9%)

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
           N  I    + G V  A +VFN +  +D +SW+++I+G + NG   +A  LF   +   + 
Sbjct: 175 NTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNI- 233

Query: 310 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEA 369
               T+  L++  +  G +++   +F++M T   +V     +  ++  Y + G L+ A  
Sbjct: 234 ---RTWTILLTGYAKEGRIEEAREVFESM-TERNVVS----WNAMISGYVQNGDLKNARK 285

Query: 370 FIREMPIE--AEW-SVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAG 426
              EMP +  A W SV     +  R+    E+FD++ +        SV    ++S     
Sbjct: 286 LFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPER------NSVSWMVMISGYVHI 339

Query: 427 ADRWE 431
           +D WE
Sbjct: 340 SDYWE 344


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 142/428 (33%), Positives = 252/428 (58%), Gaps = 6/428 (1%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           IHA VI+  +  D FI + L+  Y  +     A ++F+ +   D+VSW +++SGLS  G+
Sbjct: 141 IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGY 200

Query: 92  HKEAIDMFCGIDV----KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
               ++ FC +      +PN  TL+SV+SAC+ + +   GK++H   ++        + N
Sbjct: 201 LGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVN 260

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           ++++ Y + G L +   LF +MP R++VSW +M+  +   G+ ++ + +F  M++     
Sbjct: 261 SLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAG-IN 319

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
           P++AT+V +L AC+        + +H+YI  R   +   ++  A++N+Y K G +  +  
Sbjct: 320 PDQATMVALLRACTDTGLGRQAESIHAYIH-RCGFNADIIIATALLNLYAKLGRLNASED 378

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           +F  +  +D+I+W+ +++G A++ CGR+A++LF LM+   V  D VTF  L+SACSH GL
Sbjct: 379 IFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGL 438

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           V++G   F+ MS VY + P++ HY+C+VD+ GR+G LE+A   I+ MP+E    VWGALL
Sbjct: 439 VEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALL 498

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
            ACR++ N E+   + + L++        + ++SN ++ A  W D +K+R  ++   L +
Sbjct: 499 GACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTR 558

Query: 448 KTGCSWIE 455
             GCS+IE
Sbjct: 559 NPGCSFIE 566



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 159/312 (50%), Gaps = 19/312 (6%)

Query: 109 NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168
            +LV  +S+C+S+       AIHA  +++LN ++  + + ++  Y + G       LF +
Sbjct: 123 QSLVFAISSCTSV---SYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDE 179

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           MP +++VSW +++ G + RG+    ++ F  M      +PNE TL++V+SAC+ + AL  
Sbjct: 180 MPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDE 239

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
           GK +H  +  +  +S    V N++INMY K G +  A Q+F  +  +  +SW++++    
Sbjct: 240 GKSLHGVV-VKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHN 298

Query: 289 MNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQM 348
            NG   + + LF+LM    + PD  T +AL+ AC+  GL  Q         +++  + + 
Sbjct: 299 HNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQA-------ESIHAYIHRC 351

Query: 349 QHYACVV------DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRI 402
              A ++      ++Y + G L  +E    E+  + +   W A+L    +H       ++
Sbjct: 352 GFNADIIIATALLNLYAKLGRLNASEDIFEEIK-DRDRIAWTAMLAGYAVHACGREAIKL 410

Query: 403 RQDLVNKKGVSV 414
             DL+ K+GV V
Sbjct: 411 -FDLMVKEGVEV 421



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 118/235 (50%), Gaps = 4/235 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    + AC+      +   +H  V++ G      + NSL++ Y  +  + +A Q+F
Sbjct: 220 NEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLF 279

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +    +VSW +++   +  G+ ++ +D+F  +    + P+  T+V++L AC+     +
Sbjct: 280 EEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGR 339

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
             ++IHA+  R     +II+  A+L+ Y + G L +   +F ++  R+ ++WT M+ GYA
Sbjct: 340 QAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYA 399

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
                +EA+ +F  M K +  E +  T  ++LSACS    +  GK     +S  Y
Sbjct: 400 VHACGREAIKLFDLMVK-EGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVY 453


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 149/433 (34%), Positives = 247/433 (57%), Gaps = 6/433 (1%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           E HA+ I+     D+ + N+L+  Y+    I  + ++F S+   D +SWTTI++  ++  
Sbjct: 388 EFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSS 447

Query: 91  FHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
            H EA++M   +    +  ++  + S+L  C  L S  L K +H +++RN    ++IL+N
Sbjct: 448 RHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRN-GLLDLILEN 506

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
            ++D Y  CG       LF ++ K+++VSWT+MI      G    AV +F EM+K    +
Sbjct: 507 RLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKAN-IQ 565

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
           P+   LV++L A + +S+L+ GK VH ++  R +  +   V +++++MY  CG +  AI+
Sbjct: 566 PDSVALVSILVAIAGLSSLTKGKQVHGFL-IRRNFPIEGPVVSSLVDMYSGCGSMNYAIR 624

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           VF     KD + W+ +I+   M+G G+QA+ LF  M+   + PD V+F+AL+ ACSH  L
Sbjct: 625 VFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLYACSHSKL 684

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           V++G      M + Y + P  +HYACVVD+ GR+G  EEA  FI+ MP++ + +VW ALL
Sbjct: 685 VEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEEAYEFIKTMPMDPKSAVWCALL 744

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
            ACR+HRN  +       L+  +  + G + L+SN FA   +W +  + R  +   GL+K
Sbjct: 745 GACRVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFAEMGKWNNAKETRTRMAERGLRK 804

Query: 448 KTGCSWIEVNPSI 460
              CSWIE+  +I
Sbjct: 805 NPACSWIEIGNNI 817



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/430 (26%), Positives = 202/430 (46%), Gaps = 23/430 (5%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLH---DIFIQNSLLHFYVTVKDI 61
           P +  HY +   L   +      +  ++HAH +  G L+   D F+   L+  Y     +
Sbjct: 54  PPAREHYGWV--LDLVAARRAAAEGRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRV 111

Query: 62  FSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK------PNANTLVSVL 115
             A ++FN +    V SW  ++      G   EA+ ++  +         P+  TL SVL
Sbjct: 112 DDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVL 171

Query: 116 SACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLF--VKMPKRN 173
            AC +    + G  +H  +++   + + ++ NA++  Y +CG L S   +F  ++   R+
Sbjct: 172 KACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARD 231

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
           V SW +++ G  + G   EA+++F+ M+ +     N  T V VL  C+ +  LS G+ +H
Sbjct: 232 VASWNSVVSGCVQNGRTLEALALFRGMQ-SAGFPMNSYTSVAVLQVCAELGLLSLGRELH 290

Query: 234 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG 293
           + +      S  N+  NA++ MY K G V  A++VF  +A KD ISW++++S    N   
Sbjct: 291 AALLKCG--SELNIQCNALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFY 348

Query: 294 RQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
            +A+  F  M+ +   PD    ++L SA  H   ++ G   F A +    +   +Q    
Sbjct: 349 AEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGR-EFHAYAIKQRLHTDLQVGNT 407

Query: 354 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC--RIHRNDEMFDRIRQDLVNKKG 411
           ++DMY + G +E +      M I    S W  +L AC  +  R+ E  + I +  + K+G
Sbjct: 408 LMDMYIKCGSIECSAKVFESMGIRDHIS-WTTIL-ACFAQSSRHSEALEMILE--LQKEG 463

Query: 412 VSVGTFALMS 421
           + V +  + S
Sbjct: 464 IMVDSMMIGS 473



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 108/427 (25%), Positives = 207/427 (48%), Gaps = 27/427 (6%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQ-NSLLHFYVTVK 59
           M S     N YT    L+ C+         E+HA +++ G   ++ IQ N+LL  Y    
Sbjct: 258 MQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGS--ELNIQCNALLVMYAKYG 315

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLS 116
            + SA ++F  +   D +SW +++S   +  F+ EAID F  +     +P+   +VS+ S
Sbjct: 316 RVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSS 375

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
           A   L     G+  HA++++     ++ + N ++D YI+CGS+     +F  M  R+ +S
Sbjct: 376 ALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHIS 435

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           WTT++  +A+     EA+ +  E++K +    +   + ++L  C  + ++S  K VH Y 
Sbjct: 436 WTTILACFAQSSRHSEALEMILELQK-EGIMVDSMMIGSILETCCGLKSISLLKQVHCY- 493

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
           + R  L +  ++ N +I++Y +CG+   ++ +F  +  KD +SW+++I+    NG    A
Sbjct: 494 AIRNGL-LDLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGA 552

Query: 297 LQLFSLMIINAVFPDDVTFIAL------ISACSHGGLVDQGLILFKAMSTVYEIVPQMQH 350
           + LF+ M    + PD V  +++      +S+ + G  V  G ++ +       +V  +  
Sbjct: 553 VFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQV-HGFLIRRNFPIEGPVVSSL-- 609

Query: 351 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQDL 406
               VDMY   G +  A         + +  +W A++NA  +H +     ++F R+ Q  
Sbjct: 610 ----VDMYSGCGSMNYAIRVFERAKCK-DVVLWTAMINATGMHGHGKQAIDLFKRMLQTG 664

Query: 407 VNKKGVS 413
           +    VS
Sbjct: 665 LTPDHVS 671


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 142/428 (33%), Positives = 252/428 (58%), Gaps = 6/428 (1%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           IHA VI+  +  D FI + L+  Y  +     A ++F+ +   D+VSW +++SGLS  G+
Sbjct: 84  IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGY 143

Query: 92  HKEAIDMFCGIDV----KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
               ++ FC +      +PN  TL+SV+SAC+ + +   GK++H   ++        + N
Sbjct: 144 LGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVN 203

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           ++++ Y + G L +   LF +MP R++VSW +M+  +   G+ ++ + +F  M++     
Sbjct: 204 SLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAG-IN 262

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
           P++AT+V +L AC+        + +H+YI  R   +   ++  A++N+Y K G +  +  
Sbjct: 263 PDQATMVALLRACTDTGLGRQAESIHAYIH-RCGFNADIIIATALLNLYAKLGRLNASED 321

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           +F  +  +D+I+W+ +++G A++ CGR+A++LF LM+   V  D VTF  L+SACSH GL
Sbjct: 322 IFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGL 381

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           V++G   F+ MS VY + P++ HY+C+VD+ GR+G LE+A   I+ MP+E    VWGALL
Sbjct: 382 VEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALL 441

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
            ACR++ N E+   + + L++        + ++SN ++ A  W D +K+R  ++   L +
Sbjct: 442 GACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTR 501

Query: 448 KTGCSWIE 455
             GCS+IE
Sbjct: 502 NPGCSFIE 509



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 159/312 (50%), Gaps = 19/312 (6%)

Query: 109 NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168
            +LV  +S+C+S+       AIHA  +++LN ++  + + ++  Y + G       LF +
Sbjct: 66  QSLVFAISSCTSV---SYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDE 122

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           MP +++VSW +++ G + RG+    ++ F  M      +PNE TL++V+SAC+ + AL  
Sbjct: 123 MPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDE 182

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
           GK +H  +  +  +S    V N++INMY K G +  A Q+F  +  +  +SW++++    
Sbjct: 183 GKSLHGVV-VKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHN 241

Query: 289 MNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQM 348
            NG   + + LF+LM    + PD  T +AL+ AC+  GL  Q         +++  + + 
Sbjct: 242 HNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQA-------ESIHAYIHRC 294

Query: 349 QHYACVV------DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRI 402
              A ++      ++Y + G L  +E    E+  + +   W A+L    +H       ++
Sbjct: 295 GFNADIIIATALLNLYAKLGRLNASEDIFEEIK-DRDRIAWTAMLAGYAVHACGREAIKL 353

Query: 403 RQDLVNKKGVSV 414
             DL+ K+GV V
Sbjct: 354 -FDLMVKEGVEV 364



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 118/235 (50%), Gaps = 4/235 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    + AC+      +   +H  V++ G      + NSL++ Y  +  + +A Q+F
Sbjct: 163 NEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLF 222

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +    +VSW +++   +  G+ ++ +D+F  +    + P+  T+V++L AC+     +
Sbjct: 223 EEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGR 282

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
             ++IHA+  R     +II+  A+L+ Y + G L +   +F ++  R+ ++WT M+ GYA
Sbjct: 283 QAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYA 342

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
                +EA+ +F  M K +  E +  T  ++LSACS    +  GK     +S  Y
Sbjct: 343 VHACGREAIKLFDLMVK-EGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVY 396


>gi|356532311|ref|XP_003534717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 755

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 145/432 (33%), Positives = 253/432 (58%), Gaps = 5/432 (1%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           +H  ++  G   D  ++ SL+  Y+    I  A ++F      DVV WT +ISGL + G 
Sbjct: 282 LHGQILRAGFYLDAHVETSLIVVYLKGGKIDIAFRMFERSSDKDVVLWTAMISGLVQNGS 341

Query: 92  HKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148
             +A+ +F       VKP+  T+ SV++AC+ L S+ LG +I  + LR     ++   N+
Sbjct: 342 ADKALAVFRQMLKFGVKPSTATMASVITACAQLGSYNLGTSILGYILRQELPLDVATQNS 401

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
           ++  Y +CG L     +F  M +R++VSW  M+ GYA+ G+  EA+ +F EM ++    P
Sbjct: 402 LVTMYAKCGHLDQSSIVFDMMNRRDLVSWNAMVTGYAQNGYVCEALFLFNEM-RSDNQTP 460

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           +  T+V++L  C+S   L  GK++HS++  R  L    LV  ++++MY KCGD+  A + 
Sbjct: 461 DSITIVSLLQGCASTGQLHLGKWIHSFV-IRNGLRPCILVDTSLVDMYCKCGDLDTAQRC 519

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           FN +   D +SWS +I G   +G G  AL+ +S  + + + P+ V F++++S+CSH GLV
Sbjct: 520 FNQMPSHDLVSWSAIIVGYGYHGKGEAALRFYSKFLESGMKPNHVIFLSVLSSCSHNGLV 579

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
           +QGL ++++M+  + I P ++H+ACVVD+  RAG +EEA    ++   +    V G +L+
Sbjct: 580 EQGLNIYESMTKDFGIAPDLEHHACVVDLLSRAGRVEEAYNVYKKKFPDPVLDVLGIILD 639

Query: 389 ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
           ACR + N+E+ D I  D++  + +  G F  +++ +A  ++WE+  +    +R +GLKK 
Sbjct: 640 ACRANGNNELGDTIANDILMLRPMDAGNFVQLAHCYASINKWEEVGEAWTYMRSLGLKKI 699

Query: 449 TGCSWIEVNPSI 460
            G S+I+++ +I
Sbjct: 700 PGWSFIDIHGTI 711



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 196/392 (50%), Gaps = 10/392 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML      + YTF   LKACS  +     L +H  ++  G   D +I +SL++FY     
Sbjct: 52  MLKTHVPSDAYTFPSLLKACSFLNLFSLGLTLHQRILVSGLSLDAYIASSLINFYAKFGF 111

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
              A ++F+ +   +VV WTTII   S+ G   EA  +F  +    ++P++ T++S+L  
Sbjct: 112 ADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPEAFSLFDEMRRQGIQPSSVTVLSLLFG 171

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
            S L +H   + +H  ++     ++I L N++L+ Y +CG++     LF  M  R++VSW
Sbjct: 172 VSEL-AHV--QCLHGCAILYGFMSDINLSNSMLNVYGKCGNIEYSRKLFDYMDHRDLVSW 228

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
            ++I  YA+ G   E + + + M + +  E    T  +VLS  +S   L  G+ +H  I 
Sbjct: 229 NSLISAYAQIGNICEVLLLLKTM-RLQGFEAGPQTFGSVLSVAASRGELKLGRCLHGQI- 286

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            R    +   V  ++I +Y+K G + IA ++F   + KD + W+ +ISGL  NG   +AL
Sbjct: 287 LRAGFYLDAHVETSLIVVYLKGGKIDIAFRMFERSSDKDVVLWTAMISGLVQNGSADKAL 346

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
            +F  M+   V P   T  ++I+AC+  G  + G  +   +    E+   +     +V M
Sbjct: 347 AVFRQMLKFGVKPSTATMASVITACAQLGSYNLGTSILGYI-LRQELPLDVATQNSLVTM 405

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           Y + G L+++ + + +M    +   W A++  
Sbjct: 406 YAKCGHLDQS-SIVFDMMNRRDLVSWNAMVTG 436



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 131/261 (50%), Gaps = 4/261 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    + AC+    +     I  +++      D+  QNSL+  Y     +  +  +F+ +
Sbjct: 363 TMASVITACAQLGSYNLGTSILGYILRQELPLDVATQNSLVTMYAKCGHLDQSSIVFDMM 422

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              D+VSW  +++G ++ G+  EA+ +F  +   +  P++ T+VS+L  C+S     LGK
Sbjct: 423 NRRDLVSWNAMVTGYAQNGYVCEALFLFNEMRSDNQTPDSITIVSLLQGCASTGQLHLGK 482

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IH+  +RN     I++D +++D Y +CG L +    F +MP  ++VSW+ +I GY   G
Sbjct: 483 WIHSFVIRNGLRPCILVDTSLVDMYCKCGDLDTAQRCFNQMPSHDLVSWSAIIVGYGYHG 542

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
             + A+  + +  ++   +PN    ++VLS+CS    +  G  ++  ++  + ++     
Sbjct: 543 KGEAALRFYSKFLESG-MKPNHVIFLSVLSSCSHNGLVEQGLNIYESMTKDFGIAPDLEH 601

Query: 249 GNAVINMYVKCGDVGIAIQVF 269
              V+++  + G V  A  V+
Sbjct: 602 HACVVDLLSRAGRVEEAYNVY 622


>gi|326527617|dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 642

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 152/482 (31%), Positives = 264/482 (54%), Gaps = 45/482 (9%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
            K+C+L     +  ++H H +  G L D+F+  +L+ FY    D+ SA  +F+ +   D 
Sbjct: 126 FKSCALTASSCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSVFDEMPVKDP 185

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGID--------------------------------- 103
           +    +I+G SK G   +A  +F G++                                 
Sbjct: 186 IPINCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALTLFDRMLSE 245

Query: 104 -VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNL----NENNIILDNAILDFYIRCGS 158
             +PNA T+ SV S C+       GK +     R+L    +  N+I+  A+++ Y++C +
Sbjct: 246 GARPNAITITSVFSICAKSGDLDTGKRV-----RDLIGEDDLQNVIVHTALMEMYVKCRA 300

Query: 159 LASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLS 218
           +      F +M +R+VV+W+TMI GYA+ G   E++ +F+ M+ T +  PNE TLV V+S
Sbjct: 301 IDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKAT-DCRPNEVTLVGVIS 359

Query: 219 ACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI 278
           AC+ + +    + + +Y   +  L +++ +G+A+I+MY +CG VG A  VF+ +  K  I
Sbjct: 360 ACAQLGSDELVEQIGNYAENQR-LPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVI 418

Query: 279 SWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM 338
           +W+++I GLAMNG    A+ L+  M  N V P+++TF+AL++AC+H GLVDQG+  F+ M
Sbjct: 419 TWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEM 478

Query: 339 STVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEM 398
              + + PQ++H AC+VD+  ++G L EA  FI +M +E    +W  LL++CR H + E+
Sbjct: 479 KREHLVSPQVEHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADVEL 538

Query: 399 FDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNP 458
                + L+  +  +   + L+SN +A A  W D  +IRD +R   ++K +  SWI+++ 
Sbjct: 539 AKLASRKLLAMEPDNSSIYVLLSNIYADAGLWGDAREIRDLMRSKNVQKLSAYSWIKLDG 598

Query: 459 SI 460
            +
Sbjct: 599 EV 600



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 160/359 (44%), Gaps = 64/359 (17%)

Query: 63  SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKP---NANTLVSVLSACS 119
           +A  +F++V  P     +T +S LS+   H + +  F  +  K     +  +  V  +C+
Sbjct: 71  AARNLFDAVPRPAPALCSTFLSSLSRASSHHDLLQTFSSMHRKGAYVPSGCVPLVFKSCA 130

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP--------- 170
              S   G+ +H H+L      ++ +  A++DFY + G + S   +F +MP         
Sbjct: 131 LTASSCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSVFDEMPVKDPIPINC 190

Query: 171 ----------------------KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
                                 +R   SW +MI  YA  G  +EA+++F  M  ++ A P
Sbjct: 191 LITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALTLFDRM-LSEGARP 249

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           N  T+ +V S C+    L  GK V   I    D   + +V  A++ MYVKC  +  A + 
Sbjct: 250 NAITITSVFSICAKSGDLDTGKRVRDLIGE--DDLQNVIVHTALMEMYVKCRAIDDARRE 307

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F+ ++ +D ++WST+I+G A NG   ++L+LF  M      P++VT + +ISAC+  G  
Sbjct: 308 FDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLG-- 365

Query: 329 DQGLILFKAMSTVYEIVPQMQHYA-------------CVVDMYGRAGLLEEAEAFIREM 374
                         E+V Q+ +YA              ++DMY R G +  A +    M
Sbjct: 366 ------------SDELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRM 412



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 147/289 (50%), Gaps = 6/289 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           MLS  +  N  T T     C+ +        +   +I    L ++ +  +L+  YV  + 
Sbjct: 242 MLSEGARPNAITITSVFSICAKSGDLDTGKRVR-DLIGEDDLQNVIVHTALMEMYVKCRA 300

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSA 117
           I  A + F+ +   DVV+W+T+I+G ++ G   E++++F      D +PN  TLV V+SA
Sbjct: 301 IDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISA 360

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C+ L S +L + I  ++          L +A++D Y RCG +     +F +M ++ V++W
Sbjct: 361 CAQLGSDELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITW 420

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
            +MI G A  GF ++A+S++++M +    +PNE T V +L+AC+    +  G      + 
Sbjct: 421 NSMIRGLAMNGFAEDAISLYEKMAENG-VQPNEITFVALLAACTHAGLVDQGMAFFEEMK 479

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDKISWSTVIS 285
             + +S        ++++  K G +  A + + +M    + + W+T++S
Sbjct: 480 REHLVSPQVEHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLS 528


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 165/496 (33%), Positives = 262/496 (52%), Gaps = 43/496 (8%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAH----PHQKALEIHAHVIEYGHLHDIFIQNSLLHFYV 56
           ML+     + YTF   LKA + A         A  +HAHV+  G   +  + +SL+  Y 
Sbjct: 10  MLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHVASSLVAAYT 69

Query: 57  TVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVS 113
              D  +A  +      P  V+W  +ISG ++ G   E+   F  +      P   T VS
Sbjct: 70  AGGDGAAARALVGECDTP--VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVS 127

Query: 114 VLSACSSLVSHKL-GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGY-------- 164
           VLSAC       L G  +H   + +    ++ ++NA++D Y  C  + S           
Sbjct: 128 VLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVR 187

Query: 165 -----------------------LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME 201
                                  LF +MP+R+ VSWT MI GY      +EA+ +F+EM+
Sbjct: 188 SVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQ 247

Query: 202 KTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGD 261
            +     +E T+V+V++AC+ + AL  G++V  Y+S R  + +   VGNA+I+MY KCG 
Sbjct: 248 YSN-VSADEFTMVSVITACAQLGALEMGEWVRVYMS-RQGIKMDAFVGNALIDMYSKCGS 305

Query: 262 VGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISA 321
           +  A+ VF  + ++DK +W+ +I GLA+NG   +A+++F  MI  +  PD+VTFI +++A
Sbjct: 306 IERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTA 365

Query: 322 CSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 381
           C+H GLVD+G   F +M   Y I P + HY C++D+ GRAG + EA   I +MP+    +
Sbjct: 366 CTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNST 425

Query: 382 VWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIR 441
           +WG LL ACR+H N E+ + + + L+     +   + L+SN +A  +RWED  ++R  I 
Sbjct: 426 IWGTLLAACRVHGNSEIGELVAERLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIM 485

Query: 442 RMGLKKKTGCSWIEVN 457
             G+KK+ GCS IE++
Sbjct: 486 EKGIKKEPGCSLIEMD 501


>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
          Length = 617

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 159/492 (32%), Positives = 261/492 (53%), Gaps = 36/492 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    S + ++ +  LKACS     ++ ++IH  + + G   D+F+QN L+  Y+    
Sbjct: 116 MLENGVSVDKFSLSLVLKACSRLGLVKEGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGW 175

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNA-NTLVSVLSACS 119
           +  A QIF+ +   D VS+ ++I G  KCG  + A ++F   D+ P     L+S  S  S
Sbjct: 176 LGFARQIFDRMPQRDSVSYNSMIDGYVKCGSTESARELF---DLMPEEMKNLISWNSMIS 232

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
                  G  I +     + + ++I  N+++D Y++ G +    YLF  MP+R+VV+W+T
Sbjct: 233 GYAQTSDGVDIASKLFSEMPDKDLISWNSMIDGYVKHGRIEDAKYLFDVMPRRDVVTWST 292

Query: 180 MIGGYAERGFCK-------------------------------EAVSVFQEMEKTKEAEP 208
           MI GYA+ GF                                 EA+ +F +MEK     P
Sbjct: 293 MIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMIAGYVQNRYNMEALEIFSDMEKESHLSP 352

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           +E TLV VLSA + +  LS    +H YI  +    +   +G A+I+MY KCG +  A+ V
Sbjct: 353 DETTLVIVLSAIAQLGRLSKAMDMHLYIVEK-QFFLGGKLGVALIDMYSKCGSIQHAMLV 411

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F  +  K    W+ +I GLA++G G  A  +   +   ++ PDD+TF+ L++ACSH GLV
Sbjct: 412 FKGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGLLNACSHSGLV 471

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
            +GL+ F+ M   ++I P++QHY C+VD+  R+G +E A+  I EMPIE    +W   L 
Sbjct: 472 KEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLA 531

Query: 389 ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
           AC  H+  E  + + + L+ + G +  ++ L+SN +A   +W+D  +IR  ++   ++K 
Sbjct: 532 ACNHHKEFETGELVAKHLIWEAGYNPSSYVLLSNLYASFGKWKDVRRIRTIMKERKIEKV 591

Query: 449 TGCSWIEVNPSI 460
            GCSWIE++  +
Sbjct: 592 PGCSWIELDGRV 603



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 138/300 (46%), Gaps = 22/300 (7%)

Query: 75  DVVSWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNANTLVSVLSACSSLVSHKLGKA 129
           D   W  +I   S     + A+ +FC     G+ V  +  +L  VL ACS L   K G  
Sbjct: 89  DXYLWNAVIKSHSHGTDPRRALLLFCLMLENGVSV--DKFSLSLVLKACSRLGLVKEGMQ 146

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           IH    +    +++ L N ++  Y++CG L     +F +MP+R+ VS+ +MI GY + G 
Sbjct: 147 IHGFLKKTGLWSDLFLQNCLIGLYLKCGWLGFARQIFDRMPQRDSVSYNSMIDGYVKCGS 206

Query: 190 CKEAVSVFQEMEKTKEAEPNE-ATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
            + A  +F  M       P E   L++  S  S  +  S G  + S + +  ++   +L+
Sbjct: 207 TESARELFDLM-------PEEMKNLISWNSMISGYAQTSDGVDIASKLFS--EMPDKDLI 257

Query: 249 G-NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
             N++I+ YVK G +  A  +F+++  +D ++WST+I G A  G   QA  LF  M    
Sbjct: 258 SWNSMIDGYVKHGRIEDAKYLFDVMPRRDVVTWSTMIDGYAKLGFVHQAKTLFDQM---- 313

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
              D V++ ++I+         + L +F  M     + P       V+    + G L +A
Sbjct: 314 PHRDVVSYNSMIAGYVQNRYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKA 373



 Score = 42.0 bits (97), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           +D   W+ VI   +     R+AL LF LM+ N V  D  +   ++ ACS  GLV +G+ +
Sbjct: 88  EDXYLWNAVIKSHSHGTDPRRALLLFCLMLENGVSVDKFSLSLVLKACSRLGLVKEGMQI 147

Query: 335 ---FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP 375
               K      ++  Q     C++ +Y + G L  A      MP
Sbjct: 148 HGFLKKTGLWSDLFLQ----NCLIGLYLKCGWLGFARQIFDRMP 187


>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
          Length = 1241

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 151/459 (32%), Positives = 266/459 (57%), Gaps = 5/459 (1%)

Query: 1    MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
            M +  +  + +T +  L  CS+   +     +HA VI+     ++ IQ++LL  Y     
Sbjct: 741  MKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGS 800

Query: 61   IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
               A  +F ++   DVV+W ++I+G  +    K+A+D+F  ++   VK +++ + SV+SA
Sbjct: 801  TEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISA 860

Query: 118  CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
               L + +LG  IH  +++   E+++ +  +++D Y + G   S   +F  MP +N+V+W
Sbjct: 861  GLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAW 920

Query: 178  TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
             +MI  Y+  G  + ++++  ++ +      +  ++  VL A SS++AL  GK +H+Y  
Sbjct: 921  NSMISCYSWNGLPEMSINLLPQILQ-HGFYLDSVSITTVLVAVSSVAALLKGKTLHAY-Q 978

Query: 238  TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
             R  +     V NA+I+MYVKCG +  A  +F  +  ++ ++W+++I+G   +G   +A+
Sbjct: 979  IRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAV 1038

Query: 298  QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
            +LF  M  +   PD+VTF+ALI++CSH G+V++GL LF+ M   Y + P+M+HYA VVD+
Sbjct: 1039 RLFKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDL 1098

Query: 358  YGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTF 417
             GRAG L++A +FIR MPI+A+ SVW  LL ACR HRN E+ + +  +L+  +      +
Sbjct: 1099 LGRAGRLDDAYSFIRGMPIDADRSVWLCLLFACRAHRNMELGELVADNLLKMEPARGSNY 1158

Query: 418  ALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
              + N +   + W+    +R  ++  GLKK  GCSWIEV
Sbjct: 1159 VPLLNLYGEVEMWDRAANLRASMKGRGLKKSPGCSWIEV 1197



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 116/431 (26%), Positives = 200/431 (46%), Gaps = 26/431 (6%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +TF   LK C+          IHA ++  G   D +I  SL++ YV    + SA Q+F+ 
Sbjct: 442 FTFPSLLKTCASLSNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDK 501

Query: 71  VV-----FPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLV 122
           +       PD+  W  +I G  K G  +E +  FC +    ++P+  +L  VL  C+ L 
Sbjct: 502 MSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQELGIRPDGYSLSIVLGICNRLS 561

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKR-NVVSWTTMI 181
            +  G+ IH + +RN+ E +  L+ A++  Y  C        LF K+  R N+V+W  MI
Sbjct: 562 WYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMI 621

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
           GG+ E G  ++++ ++  + K +  +   A+     +ACS    L FG+ VH  +  + +
Sbjct: 622 GGFVENGMWEKSLELYS-LAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDV-IKMN 679

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
                 V  +++ MY K G V  A +VF+ +  K+    + +IS    NG    AL L++
Sbjct: 680 FQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYN 739

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGL-----ILFKAMSTVYEIVPQMQHYACVVD 356
            M       D  T  +L+S CS  G  D G      ++ ++M +   I       + ++ 
Sbjct: 740 KMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAI------QSALLT 793

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDRIRQDLVNKKGVSVG 415
           MY + G  E+A++    M  E +   WG+++   C+  R  +  D  R   + K+GV   
Sbjct: 794 MYYKCGSTEDADSVFYTMK-ERDVVAWGSMIAGFCQNRRFKDALDLFRA--MEKEGVKAD 850

Query: 416 TFALMSNTFAG 426
           +  + S   AG
Sbjct: 851 SDVMTSVISAG 861


>gi|357116286|ref|XP_003559913.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 692

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 155/441 (35%), Positives = 248/441 (56%), Gaps = 5/441 (1%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           + AC  A   +  + +H   +  G   D  + N+L+  Y     +  A ++F S+ F DV
Sbjct: 254 IPACGRAKELRTGMVLHGCAVRCGVGDDTCVSNALVDMYCKCGCLGMADRVFWSIGFKDV 313

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAH 133
           VSW+T+I+G S+ G    ++++F  +    +KPN+NT+ S+L + S +   + GK IH  
Sbjct: 314 VSWSTLIAGYSQNGKDHVSVNLFTEMVTAGLKPNSNTMASILPSLSEMKLFRHGKEIHGF 373

Query: 134 SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
           SLRN  + +  L +A +DFY R GS+     +   MPKR++V W +M+ GYA  G    A
Sbjct: 374 SLRNGFDQSKFLGSAFIDFYSRQGSIREAEIVLELMPKRDLVIWNSMVAGYAVNGNTDSA 433

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVI 253
           +  F+ ++K     P+  T+V+VL  C+  S L  GK +H+Y+   Y  SV + V NA+I
Sbjct: 434 LCAFRALQKVG-FRPDHVTVVSVLPVCNHHSRLIQGKELHAYVVRHYMSSVCS-VSNALI 491

Query: 254 NMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDV 313
           +MY KC  +    ++F ++  +D  +++T+IS    +G   +A+ LF LM  + + PD V
Sbjct: 492 DMYCKCCCLEKGKEIFQLVTDRDTATYNTLISSFGKHGHEDEAIMLFDLMKRDGIAPDKV 551

Query: 314 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIRE 373
           TF+AL+S+CSH GL+++GL  +  M   Y I P  +HY+CVVD+Y R+G L++A  F+  
Sbjct: 552 TFVALLSSCSHAGLIEKGLHFYDIMLQDYNISPGKEHYSCVVDLYSRSGKLDDAWKFVSS 611

Query: 374 MPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDT 433
           +  EAE  V G LL ACR+H   ++ + + + +  +     G   L+SN +A A  W   
Sbjct: 612 LQDEAEIDVLGCLLGACRVHNRMDIAELVAKRIFEQNPSDPGYHILLSNIYANAGMWSHV 671

Query: 434 NKIRDEIRRMGLKKKTGCSWI 454
            +IR  I    LK KTG S I
Sbjct: 672 TRIRTMIENRSLKNKTGNSLI 692



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 207/419 (49%), Gaps = 25/419 (5%)

Query: 11  YTFTQALKACS-LAHPHQKAL---EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           +T+   +KAC+ L    Q  +    + A V+       +F+Q +L+  +     +  A  
Sbjct: 143 FTYPPVIKACAALGVVEQGRMVRENVEADVVRGVVAPSVFVQCALVDMFAKCGCLGEARS 202

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVS 123
           +F S++  D+ +WT +I G    G   +A+ +F  +  +    ++  + +V+ AC     
Sbjct: 203 VFESMLERDLAAWTAMIGGAVHAGDWLDAMSLFSRMRSEGFLADSVIIATVIPACGRAKE 262

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            + G  +H  ++R    ++  + NA++D Y +CG L     +F  +  ++VVSW+T+I G
Sbjct: 263 LRTGMVLHGCAVRCGVGDDTCVSNALVDMYCKCGCLGMADRVFWSIGFKDVVSWSTLIAG 322

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           Y++ G    +V++F EM  T   +PN  T+ ++L + S +     GK +H + S R    
Sbjct: 323 YSQNGKDHVSVNLFTEM-VTAGLKPNSNTMASILPSLSEMKLFRHGKEIHGF-SLRNGFD 380

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
            S  +G+A I+ Y + G +  A  V  ++  +D + W+++++G A+NG    AL  F  +
Sbjct: 381 QSKFLGSAFIDFYSRQGSIREAEIVLELMPKRDLVIWNSMVAGYAVNGNTDSALCAFRAL 440

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQG-----LILFKAMSTVYEIVPQMQHYACVVDMY 358
                 PD VT ++++  C+H   + QG      ++   MS+V  +   +      +DMY
Sbjct: 441 QKVGFRPDHVTVVSVLPVCNHHSRLIQGKELHAYVVRHYMSSVCSVSNAL------IDMY 494

Query: 359 GRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDRIRQDLVNKKGVS 413
            +   LE+ +  I ++  + + + +  L+++   H +++    +FD +++D +    V+
Sbjct: 495 CKCCCLEKGKE-IFQLVTDRDTATYNTLISSFGKHGHEDEAIMLFDLMKRDGIAPDKVT 552



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 193/412 (46%), Gaps = 40/412 (9%)

Query: 7   SYNHYTFTQALKAC-SLAHPHQKALEIHAHVIEYGH-LHDIFIQNSLLHFYVTVKDIFSA 64
           S +H +    L++C +LA    +A  +HA ++  GH      +   L+H Y  + +   A
Sbjct: 39  SASHASLLLRLRSCPTLA----EARRLHAALLVGGHHRRGAVLAAQLVHAYARLGEAGRA 94

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSS 120
             + + +   +  +W   I GL   G   EA++ +  +     V  +  T   V+ AC++
Sbjct: 95  LSVLDGMPMRNSFAWNAAIKGLVDSGQFAEALETYWAMVRDGSVAADGFTYPPVIKACAA 154

Query: 121 LVSHKLGKAIH----AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
           L   + G+ +     A  +R +   ++ +  A++D + +CG L     +F  M +R++ +
Sbjct: 155 LGVVEQGRMVRENVEADVVRGVVAPSVFVQCALVDMFAKCGCLGEARSVFESMLERDLAA 214

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           WT MIGG    G   +A+S+F  M +++    +   +  V+ AC     L  G  +H   
Sbjct: 215 WTAMIGGAVHAGDWLDAMSLFSRM-RSEGFLADSVIIATVIPACGRAKELRTGMVLHG-C 272

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
           + R  +     V NA+++MY KCG +G+A +VF  + +KD +SWST+I+G + NG    +
Sbjct: 273 AVRCGVGDDTCVSNALVDMYCKCGCLGMADRVFWSIGFKDVVSWSTLIAGYSQNGKDHVS 332

Query: 297 LQLFSLMIINAVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYEIV 345
           + LF+ M+   + P+  T  +++ + S           HG  +  G    K + + +   
Sbjct: 333 VNLFTEMVTAGLKPNSNTMASILPSLSEMKLFRHGKEIHGFSLRNGFDQSKFLGSAF--- 389

Query: 346 PQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
                    +D Y R G + EAE  +  MP + +  +W +++    ++ N +
Sbjct: 390 ---------IDFYSRQGSIREAEIVLELMP-KRDLVIWNSMVAGYAVNGNTD 431



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 126/273 (46%), Gaps = 4/273 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L + S     +   EIH   +  G     F+ ++ + FY     I  A  + 
Sbjct: 347 NSNTMASILPSLSEMKLFRHGKEIHGFSLRNGFDQSKFLGSAFIDFYSRQGSIREAEIVL 406

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLVSHK 125
             +   D+V W ++++G +  G    A+  F     +  +P+  T+VSVL  C+      
Sbjct: 407 ELMPKRDLVIWNSMVAGYAVNGNTDSALCAFRALQKVGFRPDHVTVVSVLPVCNHHSRLI 466

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK +HA+ +R+   +   + NA++D Y +C  L     +F  +  R+  ++ T+I  + 
Sbjct: 467 QGKELHAYVVRHYMSSVCSVSNALIDMYCKCCCLEKGKEIFQLVTDRDTATYNTLISSFG 526

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G   EA+ +F  M++   A P++ T V +LS+CS    +  G + +  +   Y++S  
Sbjct: 527 KHGHEDEAIMLFDLMKRDGIA-PDKVTFVALLSSCSHAGLIEKGLHFYDIMLQDYNISPG 585

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI 278
               + V+++Y + G +  A +  + L  + +I
Sbjct: 586 KEHYSCVVDLYSRSGKLDDAWKFVSSLQDEAEI 618


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  278 bits (712), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 151/419 (36%), Positives = 239/419 (57%), Gaps = 7/419 (1%)

Query: 42  LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG 101
           + D+   N+++  Y    D+  A ++F      DV +WT ++    + G   EA  +F  
Sbjct: 216 VRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDE 275

Query: 102 IDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLAS 161
           +  K   +  V +++  +      +G+ +       +   NI   N ++  Y + G LA 
Sbjct: 276 MPQKREMSYNV-MIAGYAQYKRMDMGREL----FEEMPFPNIGSWNIMISGYCQNGDLAQ 330

Query: 162 CGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221
              LF  MP+R+ VSW  +I GYA+ G  +EA+++  EM++  E+  N +T    LSAC+
Sbjct: 331 ARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGES-LNRSTFCCALSACA 389

Query: 222 SISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWS 281
            I+AL  GK VH  +  R       LVGNA++ MY KCG +  A  VF  + +KD +SW+
Sbjct: 390 DIAALELGKQVHGQV-VRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWN 448

Query: 282 TVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 341
           T+++G A +G GRQAL +F  MI   V PD++T + ++SACSH GL D+G   F +M+  
Sbjct: 449 TMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKD 508

Query: 342 YEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDR 401
           Y I P  +HYAC++D+ GRAG LEEA+  IR MP E + + WGALL A RIH N E+ ++
Sbjct: 509 YGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQ 568

Query: 402 IRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
             + +   +  + G + L+SN +A + RW D +K+R ++R++G++K  G SW+EV   I
Sbjct: 569 AAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQNKI 627



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 147/282 (52%), Gaps = 14/282 (4%)

Query: 28  KALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS 87
           K +++   + E     +I   N ++  Y    D+  A  +F+ +   D VSW  II+G +
Sbjct: 295 KRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYA 354

Query: 88  KCGFHKEAIDMFCGIDVKP-----NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN 142
           + G ++EA++M   +++K      N +T    LSAC+ + + +LGK +H   +R   E  
Sbjct: 355 QNGLYEEAMNML--VEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKG 412

Query: 143 IILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202
            ++ NA++  Y +CG +     +F  +  +++VSW TM+ GYA  GF ++A++VF+ M  
Sbjct: 413 CLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESM-I 471

Query: 203 TKEAEPNEATLVNVLSACSSISALSFG-KYVHSYISTRYDLSVSNLVGNAVINMYVKCGD 261
           T   +P+E T+V VLSACS       G +Y HS ++  Y ++ ++     +I++  + G 
Sbjct: 472 TAGVKPDEITMVGVLSACSHTGLTDRGTEYFHS-MNKDYGITPNSKHYACMIDLLGRAGC 530

Query: 262 VGIAIQVF-NMLAYKDKISWSTVISGLAMNG---CGRQALQL 299
           +  A  +  NM    D  +W  ++    ++G    G QA ++
Sbjct: 531 LEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEM 572



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 161/352 (45%), Gaps = 41/352 (11%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID 103
           D+F  N +L  Y   + +  A  +F+S+   DVVSW  ++SG  + G   EA D+F   D
Sbjct: 94  DLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVF---D 150

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN----IILDNAILDFYIRCGSL 159
             P+ N++       + + S +L +A      R L E+     +I  N ++  Y++   L
Sbjct: 151 RMPHKNSISWNGLLAAYVRSGRLEEA------RRLFESKSDWELISCNCLMGGYVKRNML 204

Query: 160 ASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQE-------------MEKTKEA 206
                LF ++P R+++SW TMI GYA+ G   +A  +F+E                 ++ 
Sbjct: 205 GDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDG 264

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRY---------DLSVSNLVG-NAVINMY 256
             +EA    V         +S+   +  Y   +          ++   N+   N +I+ Y
Sbjct: 265 MLDEAR--RVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGY 322

Query: 257 VKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFI 316
            + GD+  A  +F+M+  +D +SW+ +I+G A NG   +A+ +   M  +    +  TF 
Sbjct: 323 CQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFC 382

Query: 317 ALISACSHGGLVDQG-LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
             +SAC+    ++ G  +  + + T YE    + +   +V MY + G ++EA
Sbjct: 383 CALSACADIAALELGKQVHGQVVRTGYEKGCLVGN--ALVGMYCKCGCIDEA 432



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 118/266 (44%), Gaps = 36/266 (13%)

Query: 142 NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME 201
           N +  NA++  Y+R    +    LF KMP +++ SW  M+ GYA     ++A  +F  M 
Sbjct: 63  NSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMP 122

Query: 202 K-------------TKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST-------RYD 241
           +              +    +EA   +V       +++S+   + +Y+ +       R  
Sbjct: 123 EKDVVSWNAMLSGYVRSGHVDEAR--DVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLF 180

Query: 242 LSVSN---LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQ 298
            S S+   +  N ++  YVK   +G A Q+F+ +  +D ISW+T+ISG A +G   QA +
Sbjct: 181 ESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARR 240

Query: 299 LFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMY 358
           LF    +  VF    T+ A++ A    G++D+   +F  M    E+      Y  ++  Y
Sbjct: 241 LFEESPVRDVF----TWTAMVYAYVQDGMLDEARRVFDEMPQKREM-----SYNVMIAGY 291

Query: 359 GRAGLLEEAEAFIREMPIE--AEWSV 382
            +   ++       EMP      W++
Sbjct: 292 AQYKRMDMGRELFEEMPFPNIGSWNI 317



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 13/186 (6%)

Query: 6   SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAH 65
            S N  TF  AL AC+     +   ++H  V+  G+     + N+L+  Y     I  A+
Sbjct: 374 ESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAY 433

Query: 66  QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLV 122
            +F  V   D+VSW T+++G ++ GF ++A+ +F  +    VKP+  T+V VLSACS   
Sbjct: 434 DVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTG 493

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNA-----ILDFYIRCGSLASCGYLFVKMP-KRNVVS 176
               G         ++N++  I  N+     ++D   R G L     L   MP + +  +
Sbjct: 494 LTDRG----TEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAAT 549

Query: 177 WTTMIG 182
           W  ++G
Sbjct: 550 WGALLG 555


>gi|20160775|dbj|BAB89716.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|125573261|gb|EAZ14776.1| hypothetical protein OsJ_04704 [Oryza sativa Japonica Group]
          Length = 916

 Score =  278 bits (712), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 156/458 (34%), Positives = 250/458 (54%), Gaps = 13/458 (2%)

Query: 2   LSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDI 61
           LSC  S    T    + +C           +H+ +++YG L  +   NSL+H Y+   D 
Sbjct: 466 LSCTLS----TVVAVIPSCFCPQDLNFGKSVHSFILKYGFLTGVSAANSLIHMYICCGDS 521

Query: 62  FSAHQIFNSVV-FPDVVSWTTIISGLSKCGFHKEAIDMF----CGIDVKPNANTLVSVLS 116
            +A  +  S+    D++SW T I G  + G + +A++ F      + + P++ TLVSVLS
Sbjct: 522 LAAFSLLESITPISDIISWNTAIVGCVQNGLYGDALEAFQFMHSTLTLNPDSITLVSVLS 581

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
            C +L    LGK+IH  +L+ L E N+ + NA+L  Y R G   S   +F  +  RN+ S
Sbjct: 582 VCGNLKLQSLGKSIHCMALKRLIEFNLRVKNALLTMYFRFGDTESAELIFSSLVGRNLCS 641

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           W  MI G+A+     E +  FQ  +K ++ EPNE ++V ++ AC+ +  L  GK +H ++
Sbjct: 642 WNCMISGFAQN---NEGLRAFQFYKKMEDFEPNEISIVGIICACTQLGDLRQGKNIHGHV 698

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
             R+ L  +  +  ++++MY KCG + I+I+VF   A K    W+++IS    +G G ++
Sbjct: 699 -VRFGLQTNVFISASLVDMYSKCGRLDISIRVFESSAEKSIACWNSMISAFGFHGLGLKS 757

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
           +++F  M  + V     TFIAL+SACSH GL D+GL  +  M   + I+P  +H+ CVVD
Sbjct: 758 IEIFWKMNNSGVKATRSTFIALLSACSHSGLTDEGLKYYHLMIEHFGIIPTPEHHVCVVD 817

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGT 416
           M GRAG L+EA  F+  +P +    VWGALL+AC      +M + + + L+  +  + G 
Sbjct: 818 MLGRAGRLQEAHKFVESLPSKQAHGVWGALLSACSKKSELKMCESVAKHLLCLEPENSGY 877

Query: 417 FALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           +  MSN +A  D W    ++RD ++  GL K  G S I
Sbjct: 878 YVTMSNLYAYQDMWSGAVQVRDILQDKGLMKPRGRSII 915



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 111/399 (27%), Positives = 198/399 (49%), Gaps = 13/399 (3%)

Query: 12  TFTQALKACSLAHPHQK--ALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN 69
           +  +AL AC  A   +      +H   ++ G + D  ++ S++  Y  V+D+ SA Q+F+
Sbjct: 63  SIVRALGACRGASREEADGVAALHCAALKSGAVLDPPVRTSVITAYSRVRDVCSALQVFD 122

Query: 70  SVVFPDVVSWTTIISGLSKCGFHKEAIDMF-CGIDVKP--NANTLVSVLSACSSLVSHKL 126
               PD++ W   IS L+    + +A+ +F   +DV    ++ ++V +LS  S   S + 
Sbjct: 123 EAAAPDLILWNAAISALTLNCRYGDAVVLFRWMVDVLGVIDSTSMVIMLSGASRARSLEH 182

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           G A H  +L+   + ++ L N ++D Y +CG   S   +F +MP R+  SW +M+ G   
Sbjct: 183 GIAFHGMALKRCLDTDLSLWNTLMDMYAKCGDFYSSEVVFQRMPYRDTTSWNSMVSGSLF 242

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL-SFGKYVH-SYISTRYDLSV 244
            G  + +   F+EM ++   + +E +L  VLSACS +  L SFG+ VH S I   Y+ + 
Sbjct: 243 NGLAEISAYYFKEMVRSS-FQADEVSLSCVLSACSHLKDLFSFGESVHSSVIKLGYEDTT 301

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           S+ V N++I  Y + G    A +VF   + K+ ++W+ +I GL  N    +A+ +F  M 
Sbjct: 302 SS-VANSLITFYYELGFPEAAEEVFLSTSNKNLVTWNAMIKGLVENDRVNEAMCMFQEM- 359

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
            +   PD  T + +ISAC   GL+ +G  +   +     I  +      ++D+Y +    
Sbjct: 360 RSKNQPDVATLVTIISACGDHGLLPEGKEVHGYIIKKGHIYEECSVGNSLLDLYMKCNDP 419

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIR 403
             A    R MP+    S W  +++     RND + +  +
Sbjct: 420 STARILFRTMPMRDLIS-WNTMISG--YSRNDSLGEEAK 455



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 169/361 (46%), Gaps = 14/361 (3%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           L   S A   +  +  H   ++     D+ + N+L+  Y    D +S+  +F  + + D 
Sbjct: 171 LSGASRARSLEHGIAFHGMALKRCLDTDLSLWNTLMDMYAKCGDFYSSEVVFQRMPYRDT 230

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVS-HKLGKAIHA 132
            SW +++SG    G  + +   F  +     + +  +L  VLSACS L      G+++H+
Sbjct: 231 TSWNSMVSGSLFNGLAEISAYYFKEMVRSSFQADEVSLSCVLSACSHLKDLFSFGESVHS 290

Query: 133 HSLR-NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
             ++    +    + N+++ FY   G   +   +F+    +N+V+W  MI G  E     
Sbjct: 291 SVIKLGYEDTTSSVANSLITFYYELGFPEAAEEVFLSTSNKNLVTWNAMIKGLVENDRVN 350

Query: 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNA 251
           EA+ +FQEM    +  P+ ATLV ++SAC     L  GK VH YI  +  +     VGN+
Sbjct: 351 EAMCMFQEMRSKNQ--PDVATLVTIISACGDHGLLPEGKEVHGYIIKKGHIYEECSVGNS 408

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMN-GCGRQALQLFSLMIINAVFP 310
           ++++Y+KC D   A  +F  +  +D ISW+T+ISG + N   G +A  +F  ++   +  
Sbjct: 409 LLDLYMKCNDPSTARILFRTMPMRDLISWNTMISGYSRNDSLGEEAKAMFKGLLSEGLSC 468

Query: 311 DDVTFIALISAC------SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
              T +A+I +C      + G  V   ++ +  ++ V      +  Y C  D      LL
Sbjct: 469 TLSTVVAVIPSCFCPQDLNFGKSVHSFILKYGFLTGVSAANSLIHMYICCGDSLAAFSLL 528

Query: 365 E 365
           E
Sbjct: 529 E 529


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  278 bits (712), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 167/480 (34%), Positives = 263/480 (54%), Gaps = 35/480 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHL---------------------HDIFI 47
           +++ F   LKA S     +   +IHA  +++G+                         F 
Sbjct: 91  DNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFT 150

Query: 48  QNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DV 104
            N+L+  Y  +  +  +  +F S V  D+VSW T+IS  S+     EA+  F  +    V
Sbjct: 151 NNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGV 210

Query: 105 KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRN--LNENNIILDNAILDFYIRCGSLASC 162
           + +  T+ SVL ACS L    +GK IHA+ LRN  L EN+ +  +A++D Y  C  + S 
Sbjct: 211 ELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFV-GSALVDMYCNCRQVESG 269

Query: 163 GYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC-S 221
             +F  +  R +  W  MI GYA  G  ++A+ +F EM K     PN  T+ +V+ AC  
Sbjct: 270 RRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVH 329

Query: 222 SISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWS 281
           S++A++ GK +H+Y + R  L+    VG+A+++MY KCG + ++ +VFN +  K+ I+W+
Sbjct: 330 SLAAIAKGKEIHAY-AIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWN 388

Query: 282 TVISGLAMNGCGRQALQLFSLMIINA-----VFPDDVTFIALISACSHGGLVDQGLILFK 336
            +I    M+G G +AL+LF  M+  A       P++VTFI + +ACSH GL+ +GL LF 
Sbjct: 389 VLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFY 448

Query: 337 AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW-SVWGALLNACRIHRN 395
            M   + + P   HYACVVD+ GRAG LEEA   +  MP E +    W +LL ACRIH+N
Sbjct: 449 RMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQN 508

Query: 396 DEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
            E+ +   ++L++ +      + L+SN ++ A  W    ++R  +R+MG+KK+ GCSWIE
Sbjct: 509 VELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIE 568



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 89/209 (42%), Gaps = 21/209 (10%)

Query: 170 PKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 229
           P R+  SW   +         +EA+S + EM     A P+      VL A S +  L  G
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEM-TVSGARPDNFAFPAVLKAVSGLQDLKTG 111

Query: 230 KYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI--------------------QVF 269
           + +H+        S S  V N ++NMY KCG +G                        +F
Sbjct: 112 EQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALF 171

Query: 270 NMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVD 329
                +D +SW+T+IS  + +    +AL  F LM++  V  D VT  +++ ACSH   +D
Sbjct: 172 ESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLD 231

Query: 330 QGLILFKAMSTVYEIVPQMQHYACVVDMY 358
            G  +   +    +++      + +VDMY
Sbjct: 232 VGKEIHAYVLRNNDLIENSFVGSALVDMY 260


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  278 bits (712), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 152/461 (32%), Positives = 249/461 (54%), Gaps = 13/461 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACS-LAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK 59
           +L  PS   H TF  ALK+ S L HP +   ++HA  ++     +  +  SLL  Y    
Sbjct: 64  LLPNPS---HLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCG 120

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAI----DMFCGIDVKPNANTLVSVL 115
            +  A ++F+ +  P  VSWT +I+     G  +EA+    + F    ++P++ T V VL
Sbjct: 121 LLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFAN-GMRPDSFTAVRVL 179

Query: 116 SACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVV 175
           +AC+ +     G+ +   + +     ++ +  A +D Y++CG +A    +F KM  ++ V
Sbjct: 180 TACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAV 239

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           +W  M+GGYA  G  +EA+ +F  M+  +   P+   +   LSAC+ + AL  G+     
Sbjct: 240 AWGAMVGGYASNGHPREALDLFLAMQ-AEGVRPDCYAVAGALSACTRLGALDLGRQAIRM 298

Query: 236 ISTRYDLSVSNLV-GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
           +   +D  + N V G A+I+MY KCG    A  VF  +  KD I W+ +I GL M G  +
Sbjct: 299 VD--WDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEK 356

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
            A  L   M  + V  +D TFI L+ +C+H GL+  G   F  M+ +Y I P+++HY C+
Sbjct: 357 TAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCI 416

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414
           VD+  RAGLL+EA   I +MP+ A   + GALL  C+IHRN E+ + +   L+  +  + 
Sbjct: 417 VDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNS 476

Query: 415 GTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
           G + ++SN ++   RWED  K+R +++  G++K   CSW+E
Sbjct: 477 GNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVE 517


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  278 bits (712), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 152/461 (32%), Positives = 249/461 (54%), Gaps = 13/461 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACS-LAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK 59
           +L  PS   H TF  ALK+ S L HP +   ++HA  ++     +  +  SLL  Y    
Sbjct: 111 LLPNPS---HLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCG 167

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAI----DMFCGIDVKPNANTLVSVL 115
            +  A ++F+ +  P  VSWT +I+     G  +EA+    + F    ++P++ T V VL
Sbjct: 168 LLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFAN-GMRPDSFTAVRVL 226

Query: 116 SACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVV 175
           +AC+ +     G+ +   + +     ++ +  A +D Y++CG +A    +F KM  ++ V
Sbjct: 227 TACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAV 286

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           +W  M+GGYA  G  +EA+ +F  M+  +   P+   +   LSAC+ + AL  G+     
Sbjct: 287 AWGAMVGGYASNGHPREALDLFLAMQ-AEGVRPDCYAVAGALSACTRLGALDLGRQAIRM 345

Query: 236 ISTRYDLSVSNLV-GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
           +   +D  + N V G A+I+MY KCG    A  VF  +  KD I W+ +I GL M G  +
Sbjct: 346 VD--WDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEK 403

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
            A  L   M  + V  +D TFI L+ +C+H GL+  G   F  M+ +Y I P+++HY C+
Sbjct: 404 TAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCI 463

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414
           VD+  RAGLL+EA   I +MP+ A   + GALL  C+IHRN E+ + +   L+  +  + 
Sbjct: 464 VDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNS 523

Query: 415 GTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
           G + ++SN ++   RWED  K+R +++  G++K   CSW+E
Sbjct: 524 GNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVE 564


>gi|357138657|ref|XP_003570906.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Brachypodium distachyon]
          Length = 608

 Score =  278 bits (712), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 159/467 (34%), Positives = 263/467 (56%), Gaps = 9/467 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYG-HLHDIFIQNSLLHFYVTVK 59
           ML      + YT    L A + A     A   HA +   G   HD  + +SL+  Y  + 
Sbjct: 107 MLRAALRPDAYTLPFLLLAAARAPEPPFARSAHALLCRLGLQAHDHTV-HSLVTMYSNLG 165

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG-ID---VKPNANTLVSVL 115
           D  +A ++F+ +   DVVSW  ++    + G   +   MF   ID   V PN  T+  VL
Sbjct: 166 DPLAARRVFDGIPRRDVVSWNAMMKAYERAGMAADVARMFRDMIDEGAVAPNEVTVAVVL 225

Query: 116 SACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVV 175
           +AC       LG+ +         E   ++ +A++  Y +CG +     +F  +  ++VV
Sbjct: 226 AACRDAGDLVLGRWLEEWVRSAEIEVGSLVGSALVGMYEKCGEMTEARRVFDGIAHKDVV 285

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           +W  MI GYA+ G  KEA+++F  M + + A P++ TLV VLSAC+++ AL  G  + +Y
Sbjct: 286 AWNAMITGYAQNGMSKEAIALFHSM-RQEGASPDKITLVGVLSACAAVGALELGTELDAY 344

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
            S R  L  +  VG A+++MY KCGD+  A+QVF  L  K++ +W+ +I GLA NG G +
Sbjct: 345 ASHR-GLYGNVYVGTALVDMYSKCGDLDKAVQVFGKLPCKNEATWNALICGLAFNGRGHE 403

Query: 296 ALQLFSLMI-INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
           A++ F +M     + PDD+TFI ++SAC H GL+  G   F ++++ ++I+P+++HY+C+
Sbjct: 404 AIRQFEVMRNEEGLRPDDITFIGVLSACVHAGLLKDGRRWFNSLTSEFQIIPKIEHYSCM 463

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414
           VD+  RAG LEEA  F+ ++P +A+  + GALL ACR  +N E+ +R+   ++  +  + 
Sbjct: 464 VDLLARAGHLEEAWDFVEKIPGKADAVMLGALLAACRKCKNVEVSERVINRIMQLEPSNS 523

Query: 415 GTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
             + + S  +A +DR +D+ K+R  +R  G+ K  GCSW+EV+  + 
Sbjct: 524 WNYVVSSKIYASSDRLDDSAKMRGLMRERGVSKIPGCSWVEVSGKVL 570


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  278 bits (711), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 148/434 (34%), Positives = 242/434 (55%), Gaps = 7/434 (1%)

Query: 31   EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
            + HA +  YG  +D  I       YV+   I +A  +F  +  P    W  +I G +  G
Sbjct: 738  KTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDG 797

Query: 91   FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
                +++++  +    +KP+       L +C+ L   + GK IH H +     N++ +D 
Sbjct: 798  RFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDA 857

Query: 148  AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
            A++D Y +CG + +   +F KM  R++VSWT+MI GYA  G+  E +  F  M ++    
Sbjct: 858  ALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLM-RSSGVI 916

Query: 208  PNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
            PN  ++++VL AC ++ AL  G++ HSY I T ++  +  LV  A+++MY KCG + +A 
Sbjct: 917  PNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDI--LVATAIMDMYSKCGSLDLAR 974

Query: 267  QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
             +F+  A KD + WS +I+   ++G GR+A+ LF  M+   V P  VTF  ++SACSH G
Sbjct: 975  CLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSG 1034

Query: 327  LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 386
            L+++G + F+ M+  + I  ++ +YAC+VD+ GRAG L EA   I  MP+E + S+WG+L
Sbjct: 1035 LLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSL 1094

Query: 387  LNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446
            L ACRIH N ++ ++I   L +   V  G   L+SN +A   RW +  K+R  + R G  
Sbjct: 1095 LGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGAN 1154

Query: 447  KKTGCSWIEVNPSI 460
            K  G S +E +  +
Sbjct: 1155 KIQGFSLVEYDNQV 1168



 Score =  257 bits (656), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 148/453 (32%), Positives = 252/453 (55%), Gaps = 6/453 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    + AC+     +    +H  VI      D+ + NSLL+ Y        A  +F+ +
Sbjct: 208 TLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKM 267

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGK 128
              DV+SW+T+I+  +      EA+++F  +  K   PN+ T+VS L AC+   + + GK
Sbjct: 268 PEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGK 327

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IH  ++    E +  +  A++D Y++C        LF ++PK++VVSW  ++ GYA+ G
Sbjct: 328 KIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNG 387

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
              +++ VF+ M  +   +P+   +V +L+A S +        +H Y+  R   + +  V
Sbjct: 388 MAYKSMGVFRNM-LSDGIQPDAVAVVKILAASSELGIFQQALCLHGYV-VRSGFNSNVFV 445

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA- 307
           G ++I +Y KCG +G A+++F  +  +D + WS++I+   ++G G +AL++F  M+ N+ 
Sbjct: 446 GASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNST 505

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           V P++VTF++++SACSH GLV++GL +F  M   Y++ P  +H+  +VD+ GR G L +A
Sbjct: 506 VRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKA 565

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
              I  MPI A   VWGALL ACRIH N EM +   ++L        G + L+SN +A  
Sbjct: 566 MDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVD 625

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            +W++  ++R  I+  GLKK  G S +EV   +
Sbjct: 626 GKWDNVAELRTRIKERGLKKMFGQSMVEVRGGV 658



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 182/365 (49%), Gaps = 10/365 (2%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           ++H+ V + G LHD F    L   Y     + +A ++F+    P+V  W + +    +  
Sbjct: 22  QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREK 81

Query: 91  FHKEAIDMF----CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLN-ENNIIL 145
             +E + +F    C     P+  T+   L AC+ L   +LGK IH  + +N    +++ +
Sbjct: 82  QWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFV 141

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            +A+++ Y +CG +     +F +  + + V WT+M+ GY +    +EA+++F +M     
Sbjct: 142 GSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDC 201

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
              +  TLV+V+SAC+ +  +  G  VH  +  R +      + N+++N+Y K G   IA
Sbjct: 202 VVLDPVTLVSVVSACAQLLNVKAGSCVHGLV-IRREFDGDLPLVNSLLNLYAKTGCEKIA 260

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
             +F+ +  KD ISWST+I+  A N    +AL LF  MI     P+ VT ++ + AC+  
Sbjct: 261 ANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVS 320

Query: 326 GLVDQGLILFK-AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 384
             +++G  + K A+   +E+         ++DMY +    +EA    + +P + +   W 
Sbjct: 321 RNLEEGKKIHKIAVWKGFEL--DFSVSTALIDMYMKCSCPDEAVDLFQRLP-KKDVVSWV 377

Query: 385 ALLNA 389
           ALL+ 
Sbjct: 378 ALLSG 382



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 146/280 (52%), Gaps = 5/280 (1%)

Query: 9    NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
            + + F  ALK+C+     Q+   IH H++  G  +D+F+  +L+  Y    DI +A  +F
Sbjct: 817  DKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVF 876

Query: 69   NSVVFPDVVSWTTIISGLSKCGFHKEAI---DMFCGIDVKPNANTLVSVLSACSSLVSHK 125
            + +   D+VSWT++ISG +  G++ E +   D+     V PN  +++SVL AC +L + +
Sbjct: 877  DKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALR 936

Query: 126  LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
             G+  H++ ++   E +I++  AI+D Y +CGSL     LF +   +++V W+ MI  Y 
Sbjct: 937  KGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYG 996

Query: 186  ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
              G  ++A+ +F +M K     P+  T   VLSACS    L  GK     ++  + ++  
Sbjct: 997  IHGHGRKAIDLFDQMVKAG-VRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARK 1055

Query: 246  NLVGNAVINMYVKCGDVGIAIQVF-NMLAYKDKISWSTVI 284
                  ++++  + G +  A+ +  NM    D   W +++
Sbjct: 1056 LSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLL 1095



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 133/267 (49%), Gaps = 3/267 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T   AL+AC+++   ++  +IH   +  G   D  +  +L+  Y+       A  +F
Sbjct: 306 NSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLF 365

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
             +   DVVSW  ++SG ++ G   +++ +F  +    ++P+A  +V +L+A S L   +
Sbjct: 366 QRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQ 425

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
               +H + +R+   +N+ +  ++++ Y +CGSL     LF  M  R+VV W++MI  Y 
Sbjct: 426 QALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYG 485

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G   EA+ +F +M K     PN  T +++LSACS    +  G  +   +   Y L   
Sbjct: 486 IHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPD 545

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNML 272
           +     ++++  + G +G A+ + N +
Sbjct: 546 SEHFGIMVDLLGRIGQLGKAMDIINRM 572



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 137/292 (46%), Gaps = 25/292 (8%)

Query: 109 NTLVSVLSACSSLVSHKLGKAI---HAHSLRNLNENNIILDNAILDFYIRCGSLASCGYL 165
             LV +  AC++      G+++   H+   +    ++      +   Y +C SL +   +
Sbjct: 5   QVLVDLFQACNN------GRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKV 58

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
           F + P  NV  W + +  Y      +E + +F  M  T    P+  T+   L AC+ +  
Sbjct: 59  FDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRM 118

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285
           L  GK +H +     ++     VG+A++ +Y KCG +G A++VF      D + W+++++
Sbjct: 119 LELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVT 178

Query: 286 GLAMNGCGRQALQLFSLMI-INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 344
           G   N    +AL LFS M+ ++ V  D VT ++++SAC+        L+  KA S V+ +
Sbjct: 179 GYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQ-------LLNVKAGSCVHGL 231

Query: 345 VPQMQHYA------CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 390
           V + +          ++++Y + G  + A     +MP E +   W  ++ AC
Sbjct: 232 VIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMP-EKDVISWSTMI-AC 281



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 13/184 (7%)

Query: 9    NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
            N  +    L AC      +K    H++VI+ G   DI +  +++  Y     +  A  +F
Sbjct: 918  NRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLF 977

Query: 69   NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHK 125
            +     D+V W+ +I+     G  ++AID+F       V+P+  T   VLSACS     +
Sbjct: 978  DETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLE 1037

Query: 126  LGKAIHAHSLRNLNENNII---LDN--AILDFYIRCGSLASCGYLFVKMPKRNVVS-WTT 179
             GK       + + E  +I   L N   ++D   R G L+    L   MP     S W +
Sbjct: 1038 EGKMY----FQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGS 1093

Query: 180  MIGG 183
            ++G 
Sbjct: 1094 LLGA 1097


>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
           [Vitis vinifera]
          Length = 836

 Score =  278 bits (711), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 150/455 (32%), Positives = 264/455 (58%), Gaps = 5/455 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +T +  L  CS+   +     +HA VI+     ++ IQ++LL  Y        A  +F
Sbjct: 344 DSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVF 403

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
            ++   DVV+W ++I+G  +    K+A+D+F  ++   VK +++ + SV+SA   L + +
Sbjct: 404 YTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVE 463

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG  IH  +++   E+++ +  +++D Y + G   S   +F  MP +N+V+W +MI  Y+
Sbjct: 464 LGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYS 523

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G  + ++++  ++ +      +  ++  VL A SS++AL  GK +H+Y   R  +   
Sbjct: 524 WNGLPEMSINLLPQILQ-HGFYLDSVSITTVLVAVSSVAALLKGKTLHAY-QIRLQIPSD 581

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V NA+I+MYVKCG +  A  +F  +  ++ ++W+++I+G   +G   +A++LF  M  
Sbjct: 582 LQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKR 641

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
           +   PD+VTF+ALI++CSH G+V++GL LF+ M   Y + P+M+HYA VVD+ GRAG L+
Sbjct: 642 SETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLD 701

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           +A +FIR MPI+A+ SVW  LL ACR HRN E+ + +  +L+  +      +  + N + 
Sbjct: 702 DAYSFIRGMPIDADRSVWLCLLFACRAHRNMELGELVADNLLKMEPARGSNYVPLLNLYG 761

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
             + W+    +R  ++  GLKK  GCSWIEV   +
Sbjct: 762 EVEMWDRAANLRASMKGRGLKKSPGCSWIEVKNRV 796



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/427 (26%), Positives = 188/427 (44%), Gaps = 37/427 (8%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +TF   LK C+          IHA ++  G   D +I  SL++ YV    + SA Q+F+ 
Sbjct: 56  FTFPSLLKTCASLSNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDK 115

Query: 71  VV-----FPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHK 125
           +       PD+  W  +I G  K G  +E +  FC +                  L  + 
Sbjct: 116 MSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQ----------------ELSWYM 159

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKR-NVVSWTTMIGGY 184
            G+ IH + +RN+ E +  L+ A++  Y  C        LF K+  R N+V+W  MIGG+
Sbjct: 160 AGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGF 219

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
            E G  ++++ ++  + K +  +   A+     +ACS    L FG+ VH  +  + +   
Sbjct: 220 VENGMWEKSLELYS-LAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDV-IKMNFQD 277

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
              V  +++ MY K G V  A +VF+ +  K+    + +IS    NG    AL L++ M 
Sbjct: 278 DPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMK 337

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQH----YACVVDMYGR 360
                 D  T  +L+S CS  G  D G  +   +     I   MQ      + ++ MY +
Sbjct: 338 AGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEV-----IKRSMQSNVAIQSALLTMYYK 392

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDRIRQDLVNKKGVSVGTFAL 419
            G  E+A++    M  E +   WG+++   C+  R  +  D  R   + K+GV   +  +
Sbjct: 393 CGSTEDADSVFYTMK-ERDVVAWGSMIAGFCQNRRFKDALDLFRA--MEKEGVKADSDVM 449

Query: 420 MSNTFAG 426
            S   AG
Sbjct: 450 TSVISAG 456


>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Cucumis sativus]
          Length = 712

 Score =  278 bits (711), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 158/460 (34%), Positives = 254/460 (55%), Gaps = 11/460 (2%)

Query: 8   YNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           Y+ Y +  ALKA + +        IH   ++ G   + F+ NSL   Y     +      
Sbjct: 215 YDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHT 274

Query: 68  FNSVVFPDVVSWTTIIS-----GLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLV 122
           F  +   DVVSWTTI++     G   CG   +A       +V PN  T  +V+S C++  
Sbjct: 275 FRKMRTLDVVSWTTIVTAYIQMGKEDCGL--QAFKRMRASNVIPNEYTFSAVISCCANFA 332

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
             K G+ +HAH L     N + + N+I+  Y +CG LAS   +F  M  R++++W+T+I 
Sbjct: 333 RLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIA 392

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
            Y++ G+ +EA      M +++  +PNE  L +VLS C S++ L  GK +H+++ +   L
Sbjct: 393 AYSQVGYGEEAFEYLSRM-RSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLS-VGL 450

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI-SWSTVISGLAMNGCGRQALQLFS 301
             +++V +A+I MY KCG +  A ++F M ++KD I SW+ +ISG A +G  ++A++LF 
Sbjct: 451 EQTSMVCSALIIMYAKCGSIAEASKIF-MDSWKDDIISWTAMISGYAEHGHSQEAIELFE 509

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            +    + PD VTFI +++ACSH G+VD G   F +MS  Y I P  +HY C++D+  RA
Sbjct: 510 NIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRA 569

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           G L +AE  IR MPI+ +  VW  LL ACRIH + +   R   +++       GT   ++
Sbjct: 570 GRLHDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLDPNCAGTHITLA 629

Query: 422 NTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           N FA   +W++   IR  ++  G+ K+ G S ++V  S+F
Sbjct: 630 NIFAAKGKWKEAANIRMLMKSKGVVKEPGWSSVKVKDSVF 669



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 202/407 (49%), Gaps = 23/407 (5%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +  +  LK C L   +     +H   ++ G ++ +F+ ++LL  Y+ + +I  + ++F+ 
Sbjct: 117 FLLSLGLKTCGLGLNYLYGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKVFDE 176

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCG-----IDVKPNANTLVSVLSACSSLVSHK 125
           +   + V+WT +I+GL + G+ +  +  F G     ++    A  +    SA S  ++H 
Sbjct: 177 MPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNH- 235

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G++IH  +L+   + N  + N++   Y +CG L    + F KM   +VVSWTT++  Y 
Sbjct: 236 -GRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYI 294

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G     +  F+ M +     PNE T   V+S C++ + L +G+ +H+++     L V 
Sbjct: 295 QMGKEDCGLQAFKRM-RASNVIPNEYTFSAVISCCANFARLKWGEQLHAHV-----LCVG 348

Query: 246 NL----VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
            +    V N+++ +Y KCG++    +VF  + ++D I+WST+I+  +  G G +A +  S
Sbjct: 349 FVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLS 408

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            M      P++    +++S C    +++QG  L   + +V      M   A ++ MY + 
Sbjct: 409 RMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALII-MYAKC 467

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQ 404
           G + EA     +   + +   W A+++    H +     E+F+ I++
Sbjct: 468 GSIAEASKIFMD-SWKDDIISWTAMISGYAEHGHSQEAIELFENIQK 513



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 148/300 (49%), Gaps = 9/300 (3%)

Query: 29  ALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           +L ++AH   + +  D+   N+ L   V    +  A  +F+ +   D VSWT IISG   
Sbjct: 36  SLTLNAH---FSNKVDLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVN 92

Query: 89  CGFHKEAIDMFCGIDVKPNANT---LVSV-LSACSSLVSHKLGKAIHAHSLRNLNENNII 144
                EA+ +F  + ++        L+S+ L  C   +++  G  +H  S++    N++ 
Sbjct: 93  SSDSSEALRLFSKMRLQSELRIDPFLLSLGLKTCGLGLNYLYGTNLHGFSVKTGLVNSVF 152

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           + +A+LD Y++ G +     +F +MP RN V+WT +I G    G+ +  ++ F  M ++K
Sbjct: 153 VGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSK 212

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
             E +       L A +   AL+ G+ +H+  + +     ++ V N++  MY KCG +  
Sbjct: 213 -VEYDSYAYAIALKASADSGALNHGRSIHTQ-TLKKGFDENSFVANSLTTMYNKCGKLDY 270

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
            +  F  +   D +SW+T+++     G     LQ F  M  + V P++ TF A+IS C++
Sbjct: 271 GLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCAN 330


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  278 bits (711), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 158/457 (34%), Positives = 263/457 (57%), Gaps = 10/457 (2%)

Query: 5   PSSYNHYTFTQA-LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFS 63
           P S    +F  + L++ SL H      E+H++++ +    D++++++L+  Y    D+  
Sbjct: 312 PDSVTFASFLPSILESGSLRH----CKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEM 367

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 120
           A +IF   +  DV   T +ISG    G + +AI+ F  +    +  N+ T+ SVL AC++
Sbjct: 368 ARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAA 427

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           + + K GK +H H L+   EN + + +AI D Y +CG L      F +M  R+ V W +M
Sbjct: 428 VAALKPGKELHCHILKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSM 487

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           I  +++ G  + A+ +F++M  +  A+ +  +L + LSA +++ AL +GK +H Y+  R 
Sbjct: 488 ISSFSQNGKPEIAIDLFRQMGMSG-AKFDSVSLSSALSAAANLPALYYGKEMHGYV-IRN 545

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
             S    V + +I+MY KCG++ +A  VFN++  K+++SW+++I+    +GC R+ L L+
Sbjct: 546 AFSSDTFVASTLIDMYSKCGNLALAWCVFNLMDGKNEVSWNSIIAAYGNHGCPRECLDLY 605

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
             M+   + PD VTF+ +ISAC H GLVD+G+  F  M+  Y I  +M+HYAC+VD+YGR
Sbjct: 606 HEMLRAGIHPDHVTFLVIISACGHAGLVDEGIHYFHCMTREYGIGARMEHYACMVDLYGR 665

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           AG + EA   I+ MP   +  VWG LL ACR+H N E+     + L+     + G + L+
Sbjct: 666 AGRVHEAFDTIKSMPFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLL 725

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           SN  A A  W    K+R  ++  G++K  G SWI+VN
Sbjct: 726 SNVHADAGEWASVLKVRSLMKEKGVQKIPGYSWIDVN 762



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/425 (25%), Positives = 191/425 (44%), Gaps = 21/425 (4%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    S + YTF   +KAC   +     + +H      G   D+F  ++L+  Y     
Sbjct: 103 MLGSNVSPDKYTFPYVIKACGGLNNVPLCMVVHDTARSLGFHVDLFAGSALIKLYADNGY 162

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSA 117
           I  A ++F+ +   D + W  ++ G  K G    AI  FC +       N+ T   +LS 
Sbjct: 163 IRDARRVFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSI 222

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C++  +   G  +H   + +  E +  + N ++  Y +CG+L     LF  MP+ + V+W
Sbjct: 223 CATRGNFCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTW 282

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
             +I GY + GF  EA  +F  M  +   +P+  T  + L +     +L   K VHSYI 
Sbjct: 283 NGLIAGYVQNGFTDEAAPLFNAM-ISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYI- 340

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            R+ +     + +A+I++Y K GDV +A ++F      D    + +ISG  ++G    A+
Sbjct: 341 VRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNILVDVAVCTAMISGYVLHGLNIDAI 400

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL-----ILFKAMSTVYEIVPQMQHYA 352
             F  +I   +  + +T  +++ AC+    +  G      IL K +  +  +       +
Sbjct: 401 NTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKELHCHILKKRLENIVNVG------S 454

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
            + DMY + G L+ A  F R M  + +   W +++++   +   E    I  DL  + G+
Sbjct: 455 AITDMYAKCGRLDLAYEFFRRMS-DRDSVCWNSMISSFSQNGKPE----IAIDLFRQMGM 509

Query: 413 SVGTF 417
           S   F
Sbjct: 510 SGAKF 514



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 161/316 (50%), Gaps = 5/316 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M +  S  N  T+T  L  C+         ++H  VI  G   D  + N+L+  Y    +
Sbjct: 204 MRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGN 263

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           +  A ++FN++   D V+W  +I+G  + GF  EA  +F  +    VKP++ T  S L +
Sbjct: 264 LLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPS 323

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
                S +  K +H++ +R+    ++ L +A++D Y + G +     +F +    +V   
Sbjct: 324 ILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNILVDVAVC 383

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
           T MI GY   G   +A++ F+ + +      N  T+ +VL AC++++AL  GK +H +I 
Sbjct: 384 TAMISGYVLHGLNIDAINTFRWLIQEGMVT-NSLTMASVLPACAAVAALKPGKELHCHIL 442

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            +   ++ N VG+A+ +MY KCG + +A + F  ++ +D + W+++IS  + NG    A+
Sbjct: 443 KKRLENIVN-VGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAI 501

Query: 298 QLFSLMIINAVFPDDV 313
            LF  M ++    D V
Sbjct: 502 DLFRQMGMSGAKFDSV 517



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 150/316 (47%), Gaps = 11/316 (3%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNS-LLHFYVTVKDIFSAHQIFNSVVFPD 75
            +ACS A   Q+A ++H  VI  G + D+   +S +L  YV       A  +F  +    
Sbjct: 18  FRACSDASMVQQARQVHTQVI-VGGMGDVCAPSSRVLGLYVLCGRFRDAGNLFFELELRY 76

Query: 76  VVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHA 132
            + W  +I GL   G+   A+  +    G +V P+  T   V+ AC  L +  L   +H 
Sbjct: 77  ALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMVVH- 135

Query: 133 HSLRNLNEN-NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
            + R+L  + ++   +A++  Y   G +     +F ++P R+ + W  M+ GY + G   
Sbjct: 136 DTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGDFD 195

Query: 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSNLVGN 250
            A+  F EM +T  +  N  T   +LS C++      G  +H   I + ++      V N
Sbjct: 196 NAIGTFCEM-RTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQ--VAN 252

Query: 251 AVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP 310
            ++ MY KCG++  A ++FN +   D ++W+ +I+G   NG   +A  LF+ MI   V P
Sbjct: 253 TLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKP 312

Query: 311 DDVTFIALISACSHGG 326
           D VTF + + +    G
Sbjct: 313 DSVTFASFLPSILESG 328


>gi|242069679|ref|XP_002450116.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
 gi|241935959|gb|EES09104.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
          Length = 597

 Score =  278 bits (711), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 152/458 (33%), Positives = 253/458 (55%), Gaps = 9/458 (1%)

Query: 9   NHYTFTQALKACS-LAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           +H TF  A+K+ S L  P     ++HA  ++     +  +  SLL+ Y     +  A + 
Sbjct: 73  SHLTFPFAIKSASRLPDPLTAGAQLHARSLKLPSHSNPHVLTSLLNLYARCGRLHDAQKA 132

Query: 68  FNSV-VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVS 123
           F+ +   P  VSWT +I+     G   EAI +        V+P++ T V VL+AC+ +  
Sbjct: 133 FDEMRQPPSTVSWTALITAYMDAGRGLEAIGVARSAFASGVRPDSFTAVRVLTACARVAD 192

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
              G+ +   + +     N+ +  A +D Y++CG +     +F KM  ++VV+W  M+GG
Sbjct: 193 LVTGEEVWTAAEKEGIAGNVFVATAAVDLYVKCGEMDKARGVFDKMKNKDVVAWGAMVGG 252

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           YA  G  +EA+ +F  M+  +   P+  T+   LSAC+ + AL  G+ V   +  ++D  
Sbjct: 253 YASNGHPREALELFFAMQ-VEGMRPDCYTVAGALSACTRLGALDLGRRVVGML--QWDEV 309

Query: 244 VSNLV-GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
           + N V G A+I+MY KCG  G A  VF  +  +D I W+ +I GL M G  + A  L   
Sbjct: 310 LGNPVLGTALIDMYAKCGSTGEAWMVFQKMRNRDIIVWNAMILGLGMTGHEKIAFALVGQ 369

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
           M  + +  +D TFI L+ +C+H GLV  G   F+ M+ +Y I P+++HY  +VD+  RAG
Sbjct: 370 MKKSGMTLNDNTFIGLLCSCTHTGLVKDGRRYFRNMTQLYHIRPRIEHYGIMVDLLSRAG 429

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSN 422
           LL+EA   I++MP+EA   VWGALL  C+IHRN ++ + + + L+  +  + G + ++SN
Sbjct: 430 LLQEAHQLIQDMPMEANAVVWGALLGGCKIHRNADLAEHVLKQLIQLEPWNSGNYVVLSN 489

Query: 423 TFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            ++ + RWED  K+R E++  G++K    SW+E++  +
Sbjct: 490 IYSNSGRWEDAAKLRLEMKAKGVEKVPASSWVELDGKV 527


>gi|357507475|ref|XP_003624026.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360495|gb|ABN08505.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499041|gb|AES80244.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 646

 Score =  278 bits (711), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 150/441 (34%), Positives = 252/441 (57%), Gaps = 53/441 (12%)

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAI----DMFCGIDVKPNANTLVSVL 115
           ++ +A   F+ +    VVSW  ++SG ++ G  +E I    DM    +V+P+  T V+V+
Sbjct: 215 NLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWVTVI 274

Query: 116 SACSSLVSHKLGKAIHAHSLRNLNEN-----NIILDNAILDFYIRCGSL----------- 159
           S+CSSL    L ++I    +R L++      N  +  A+LD + +CG+L           
Sbjct: 275 SSCSSLGDPCLSESI----VRKLDDTVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLG 330

Query: 160 -----------------------ASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSV 196
                                   S  +LF KMP+R+ VSW +MI GY + G   +A+ +
Sbjct: 331 VYKYRSSVPWNAMISAYARVGDLPSARHLFDKMPQRDTVSWNSMIAGYTQNGESVKAIKL 390

Query: 197 FQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMY 256
           F+EM  +++++P+E T+V+V SAC  +  L  G +  S +   + + +S  V N++I+MY
Sbjct: 391 FEEMISSEDSKPDEVTMVSVFSACGHLGELGLGNWAVSILKENH-IQISISVYNSLISMY 449

Query: 257 VKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFI 316
            +CG +  A+ +F  +A +D +S++T+ISG A +G G ++++L   M  + + PD +T+I
Sbjct: 450 SRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLLKMKEDGIEPDRITYI 509

Query: 317 ALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPI 376
           A+++ACSH GL+ +G  LF+++       P + HYAC++DM GRAG LEEA   I+ MP+
Sbjct: 510 AILTACSHAGLLGEGQRLFESIK-----FPDVDHYACMIDMLGRAGRLEEAMKLIQSMPM 564

Query: 377 EAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKI 436
           E    ++G+LLNA  IH+  E+ +     L   +  + G + L+SN +A A RW+D +K+
Sbjct: 565 EPHAGIYGSLLNATSIHKQVELGELAAAKLFKVEPHNSGNYVLLSNIYASAGRWKDGDKV 624

Query: 437 RDEIRRMGLKKKTGCSWIEVN 457
           RD +R+ G+KK TG SW+E N
Sbjct: 625 RDTMRKQGVKKTTGLSWLEHN 645



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 170/378 (44%), Gaps = 72/378 (19%)

Query: 34  AHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHK 93
           AHV++ G+  D +++N +L  Y     I  A ++F+ +    V  W  +ISG  KCG  +
Sbjct: 123 AHVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEE 182

Query: 94  EAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFY 153
           EA  +F                        H +G              N+I    ++  +
Sbjct: 183 EASTLF------------------------HVMGD--------QEISRNVITWTTMITGH 210

Query: 154 IRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATL 213
            + G+L +    F KMP+R+VVSW  M+ GYA+ G  +E + +F +M      +P+E T 
Sbjct: 211 AKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTW 270

Query: 214 VNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML- 272
           V V+S+CSS+      + +   +        +  V  A+++M+ KCG++  A ++F  L 
Sbjct: 271 VTVISSCSSLGDPCLSESIVRKLDDTVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLG 330

Query: 273 ---------------AY------------------KDKISWSTVISGLAMNGCGRQALQL 299
                          AY                  +D +SW+++I+G   NG   +A++L
Sbjct: 331 VYKYRSSVPWNAMISAYARVGDLPSARHLFDKMPQRDTVSWNSMIAGYTQNGESVKAIKL 390

Query: 300 FSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE--IVPQMQHYACVVD 356
           F  MI +    PD+VT +++ SAC H G +  G     A+S + E  I   +  Y  ++ 
Sbjct: 391 FEEMISSEDSKPDEVTMVSVFSACGHLGELGLGNW---AVSILKENHIQISISVYNSLIS 447

Query: 357 MYGRAGLLEEAEAFIREM 374
           MY R G +++A    +EM
Sbjct: 448 MYSRCGSMQDAVLIFQEM 465



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 45  IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID- 103
           I + NSL+  Y     +  A  IF  +   D+VS+ T+ISG ++ G   E+I++   +  
Sbjct: 439 ISVYNSLISMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLLKMKE 498

Query: 104 --VKPNANTLVSVLSACS 119
             ++P+  T +++L+ACS
Sbjct: 499 DGIEPDRITYIAILTACS 516


>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g47840-like [Cucumis
           sativus]
          Length = 712

 Score =  278 bits (711), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 158/460 (34%), Positives = 254/460 (55%), Gaps = 11/460 (2%)

Query: 8   YNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           Y+ Y +  ALKA + +        IH   ++ G   + F+ NSL   Y     +      
Sbjct: 215 YDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHT 274

Query: 68  FNSVVFPDVVSWTTIIS-----GLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLV 122
           F  +   DVVSWTTI++     G   CG   +A       +V PN  T  +V+S C++  
Sbjct: 275 FRKMRTLDVVSWTTIVTAYIQMGKEDCGL--QAFKRMRASNVIPNEYTFSAVISCCANFA 332

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
             K G+ +HAH L     N + + N+I+  Y +CG LAS   +F  M  R++++W+T+I 
Sbjct: 333 RLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIA 392

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
            Y++ G+ +EA      M +++  +PNE  L +VLS C S++ L  GK +H+++ +   L
Sbjct: 393 AYSQVGYGEEAFEYLSRM-RSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLS-VGL 450

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI-SWSTVISGLAMNGCGRQALQLFS 301
             +++V +A+I MY KCG +  A ++F M ++KD I SW+ +ISG A +G  ++A++LF 
Sbjct: 451 EQTSMVCSALIIMYAKCGSIAEASKIF-MDSWKDDIISWTAMISGYAEHGHSQEAIELFE 509

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            +    + PD VTFI +++ACSH G+VD G   F +MS  Y I P  +HY C++D+  RA
Sbjct: 510 NIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRA 569

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           G L +AE  IR MPI+ +  VW  LL ACRIH + +   R   +++       GT   ++
Sbjct: 570 GRLHDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLDPNCAGTHITLA 629

Query: 422 NTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           N FA   +W++   IR  ++  G+ K+ G S ++V  S+F
Sbjct: 630 NIFAAKGKWKEAANIRMLMKSKGVVKEPGWSSVKVKDSVF 669



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 202/407 (49%), Gaps = 23/407 (5%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +  +  LK C L   +     +H   ++ G ++ +F+ ++LL  Y+ + +I  + ++F+ 
Sbjct: 117 FLLSLGLKTCGLGLNYLYGTNLHGFSVKXGLVNSVFVGSALLDMYMKIGEIGRSCKVFDE 176

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCG-----IDVKPNANTLVSVLSACSSLVSHK 125
           +   + V+WT +I+GL + G+ +  +  F G     ++    A  +    SA S  ++H 
Sbjct: 177 MPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNH- 235

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G++IH  +L+   + N  + N++   Y +CG L    + F KM   +VVSWTT++  Y 
Sbjct: 236 -GRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYI 294

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G     +  F+ M +     PNE T   V+S C++ + L +G+ +H+++     L V 
Sbjct: 295 QMGKEDCGLQAFKRM-RASNVIPNEYTFSAVISCCANFARLKWGEQLHAHV-----LCVG 348

Query: 246 NL----VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
            +    V N+++ +Y KCG++    +VF  + ++D I+WST+I+  +  G G +A +  S
Sbjct: 349 FVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLS 408

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            M      P++    +++S C    +++QG  L   + +V      M   A ++ MY + 
Sbjct: 409 RMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALII-MYAKC 467

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQ 404
           G + EA     +   + +   W A+++    H +     E+F+ I++
Sbjct: 468 GSIAEASKIFMD-SWKDDIISWTAMISGYAEHGHSQEAIELFENIQK 513



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 148/300 (49%), Gaps = 9/300 (3%)

Query: 29  ALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           +L ++AH   + +  D+   N+ L   V    +  A  +F+ +   D VSWT IISG   
Sbjct: 36  SLTLNAH---FSNKVDLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVN 92

Query: 89  CGFHKEAIDMFCGIDVKPNANT---LVSV-LSACSSLVSHKLGKAIHAHSLRNLNENNII 144
                EA+ +F  + ++        L+S+ L  C   +++  G  +H  S++    N++ 
Sbjct: 93  SSDSSEALRLFSKMRLQSELRIDPFLLSLGLKTCGLGLNYLYGTNLHGFSVKXGLVNSVF 152

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           + +A+LD Y++ G +     +F +MP RN V+WT +I G    G+ +  ++ F  M ++K
Sbjct: 153 VGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSK 212

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
             E +       L A +   AL+ G+ +H+  + +     ++ V N++  MY KCG +  
Sbjct: 213 -VEYDSYAYAIALKASADSGALNHGRSIHTQ-TLKKGFDENSFVANSLTTMYNKCGKLDY 270

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
            +  F  +   D +SW+T+++     G     LQ F  M  + V P++ TF A+IS C++
Sbjct: 271 GLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCAN 330


>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
 gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 548

 Score =  278 bits (711), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 156/470 (33%), Positives = 260/470 (55%), Gaps = 51/470 (10%)

Query: 41  HLHDIFIQNSLLHFYVTVKDIF---------------SAHQIFNSVVFPDVVSWTTIISG 85
           HLH   I   +LH  +   ++F                A  IF++   PD+  + T I  
Sbjct: 37  HLHLYQIHGFMLHRALDQDNLFLSQFIDACTSLGLSSYAFSIFSNKTHPDLRLYNTAIKA 96

Query: 86  LSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHKLGKAIHAHSL------- 135
           LSK      AI ++  I +   +P++ ++ SVL A   L + ++G+ IH  ++       
Sbjct: 97  LSKTSSPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKLSAVEVGRQIHTQTVSSALDMD 156

Query: 136 --------------------RNLNE----NNIILDNAILDFYIRCGSLASCGYLFVKMPK 171
                               R L +     ++ L NA++  Y++ G L S   +F +MP+
Sbjct: 157 VNVATSLIQMYSSCGFVSDARKLFDFVGFKDVALWNAMVAGYVKVGELKSARKVFNEMPQ 216

Query: 172 RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKY 231
           RNV+SWTT+I GYA+     EA+ +F++M+  +E EP+E  ++ VLSAC+ + AL  G++
Sbjct: 217 RNVISWTTLIAGYAQTNRPHEAIELFRKMQ-LEEVEPDEIAMLAVLSACADLGALELGEW 275

Query: 232 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNG 291
           +H+YI       + +L  NA+I+MY K G++  A++VF  +  K  I+WSTVI+ LA++G
Sbjct: 276 IHNYIEKHGLCRIVSLY-NALIDMYAKSGNIRRALEVFENMKQKSVITWSTVIAALALHG 334

Query: 292 CGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY 351
            G +A+ +F  M    V P++VTF+A++SACSH G+VD G   F  M ++Y+I P+++HY
Sbjct: 335 LGGEAIDMFLRMEKAKVRPNEVTFVAILSACSHVGMVDVGRYYFDQMQSMYKIEPKIEHY 394

Query: 352 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKG 411
            C++D+  RAG L+EA+  + +MP EA   +WG+LL A   HR+ E+     + L   + 
Sbjct: 395 GCMIDLLARAGYLQEAQKLLHDMPFEANAMIWGSLLAASNTHRDAELAQLALKHLAKLEP 454

Query: 412 VSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
            + G + L+SNT+A   +W ++  +R  +R  G+KK  G S IE+N  ++
Sbjct: 455 GNSGNYVLLSNTYAALGKWNESGTVRKLMRNAGVKKAPGGSVIEINNIVY 504


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  278 bits (710), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 158/471 (33%), Positives = 259/471 (54%), Gaps = 30/471 (6%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N Y+F  AL AC+         ++HA V +  +  D+++ ++L+  Y     +  A ++F
Sbjct: 146 NEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVF 205

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           + ++  ++V+W ++I+   + G   EA+++F  +    ++P+  TL SV+SAC+SL + K
Sbjct: 206 SGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALK 265

Query: 126 LGKAIHAHSLR-NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
            G  IHA  ++ N   ++++L NA++D Y +C  +     +F +M  RNVVS T+M+ GY
Sbjct: 266 EGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGY 325

Query: 185 AERGFCKEAVSVFQEMEK-------------TKEAEPNEATLVNVLSACSSI--SALSFG 229
           A     K A  +F +M +             T+  E  EA  +  L    SI  +  +FG
Sbjct: 326 ARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFG 385

Query: 230 KYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAM 289
             + S I           VGN++I+MY+KCG +    +VF  +  +D +SW+ +I G A 
Sbjct: 386 NLLKSDI----------FVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQ 435

Query: 290 NGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQ 349
           NG G +ALQ+F  M++    PD VT I ++ ACSH GLV++G   F +M   + ++P   
Sbjct: 436 NGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEE-HGLIPLKD 494

Query: 350 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNK 409
           HY C+VD+ GRAG L EA+  I  MP+  +  VWG+LL AC++H N EM     + L+  
Sbjct: 495 HYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEI 554

Query: 410 KGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
              + G + L+SN +A   RW D  ++R  +R+ G+ K+ GCSWIEV   +
Sbjct: 555 DPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRV 605



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 114/426 (26%), Positives = 203/426 (47%), Gaps = 56/426 (13%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFY------------- 55
           N   F + L +C  +   +    +HA ++      +IFIQN L+  Y             
Sbjct: 14  NSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLF 73

Query: 56  ----------------VTVKDIF--SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAID 97
                           V  K  F   A ++F S+  PD  SW +++SG ++    +E+++
Sbjct: 74  DRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLE 133

Query: 98  MFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
            F  +   D   N  +  S LSAC+ L+   +G  +HA   ++    ++ + +A++D Y 
Sbjct: 134 YFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYS 193

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           +CGS+A    +F  M +RN+V+W ++I  Y + G   EA+ VF  M  +   EP+E TL 
Sbjct: 194 KCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSG-LEPDEVTLA 252

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
           +V+SAC+S+ AL  G  +H+ +          ++GNA+++MY KC  V  A +VF+ ++ 
Sbjct: 253 SVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSI 312

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           ++ +S ++++SG A     + A  +FS M    V    V++ ALI+  +  G  ++ L L
Sbjct: 313 RNVVSETSMVSGYARAASVKAARFMFSKMTQRNV----VSWNALIAGYTQNGENEEALRL 368

Query: 335 FKAMSTVYEIVPQMQHYA-------------CVVDMYGRAGLLEEAEAFIREMPIEAEWS 381
           F+ +     I P   HY               ++DMY + G +E+      +M  E +  
Sbjct: 369 FRLLKR-ESIWP--THYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMK-ERDCV 424

Query: 382 VWGALL 387
            W A++
Sbjct: 425 SWNAII 430



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 36/333 (10%)

Query: 106 PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYL 165
           PN++    +L +C    S +  + +HA  L       I + N ++D Y +C  L     L
Sbjct: 13  PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE------------------ 207
           F +MP+RN  +W ++I    + GF  EA  +F  M +  +                    
Sbjct: 73  FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESL 132

Query: 208 ------------PNEATLVNVLSACSSISALSFGKYVHSYIS-TRYDLSVSNLVGNAVIN 254
                        NE +  + LSAC+ +  L+ G  VH+ +S +RY   V   +G+A+I+
Sbjct: 133 EYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDV--YMGSALID 190

Query: 255 MYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVT 314
           MY KCG V  A +VF+ +  ++ ++W+++I+    NG   +AL++F  M+ + + PD+VT
Sbjct: 191 MYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVT 250

Query: 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
             +++SAC+    + +GL +   +    +    +     +VDMY +   + EA      M
Sbjct: 251 LASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRM 310

Query: 375 PIE---AEWSVWGALLNACRIHRNDEMFDRIRQ 404
            I    +E S+      A  +     MF ++ Q
Sbjct: 311 SIRNVVSETSMVSGYARAASVKAARFMFSKMTQ 343


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  278 bits (710), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 148/457 (32%), Positives = 254/457 (55%), Gaps = 38/457 (8%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+   +  N +T+    KAC+ A   ++ +++HAHVI+ G   D+ I+++ +  Y +  +
Sbjct: 121 MMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGE 180

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSS 120
           +  A ++       DV+ +  +I G  KCG  + A ++F  ++ K               
Sbjct: 181 VEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDK--------------- 225

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
                                N+   N ++    +CG +     LF +M ++N +SW+ M
Sbjct: 226 ---------------------NVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAM 264

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           I GY + G+ KEA+ VF  M++ +E  P +  L +VL+AC+++ AL  G+++H+Y++   
Sbjct: 265 IDGYIKGGYYKEALEVFNVMQR-EEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNS 323

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
           + S   ++G A+++MY KCG + +A  VF  +  K+  +W+ +I GL M+G    A++LF
Sbjct: 324 N-SFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELF 382

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
             M      P+ +T + ++SAC+H G+VD+GL +F +M  VY I P M+HY CVVD+ GR
Sbjct: 383 FKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGR 442

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           AGLL EAE  +  MP+E   +VWGALL ACR H + E+ +R+ + L+  +  + G +AL+
Sbjct: 443 AGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGERVGKILLELEPQNSGRYALL 502

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           SN +A A RW+D   +R  ++  G+K  TG S I+ +
Sbjct: 503 SNIYARAGRWDDVANVRKLMKERGVKTSTGISMIDFD 539


>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
 gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  278 bits (710), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 154/455 (33%), Positives = 259/455 (56%), Gaps = 13/455 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +++TFT   K C+L     + LE H HV++ G   D+++  +L+  Y    ++  A ++F
Sbjct: 101 DNFTFTVLAKCCALRMAVWEGLETHGHVVKIGFCFDMYVSTALVDMYAKFGNLGLARKVF 160

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSH--KL 126
           N +    +VSWT +I G  + G    A  +F    + P  ++     +A + L+    K+
Sbjct: 161 NDMPDRSLVSWTALIGGYVRRGDMGNAWFLF---KLMPGRDS-----AAFNLLIDGYVKV 212

Query: 127 GKAIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           G    A SL + + E N+I   +++  Y   G + S  +LF  MP++N+VSW  MIGGY 
Sbjct: 213 GDMESARSLFDEMPERNVISWTSMIYGYCNNGDVLSARFLFDAMPEKNLVSWNAMIGGYC 272

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +     EA+ +F+E++ +   EPNE T+V++L A +++ AL  G++VH ++  R  L  +
Sbjct: 273 QNKQPHEALKLFRELQSSTVFEPNEVTVVSILPAIATLGALELGEWVHRFVQ-RKKLDAA 331

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V  ++++MY+KCG++  A +VF+ +  K+  +W+ +I+G AMNG   +AL+ FS M  
Sbjct: 332 VNVCTSLVDMYLKCGEISKARKVFSEIPKKETATWNALINGFAMNGLASEALEAFSEMQQ 391

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             + P+D+T   ++SACSHGGLV++G   FKAM     + P+++HY C+VD+ GRAG L+
Sbjct: 392 EGIKPNDITMTGVLSACSHGGLVEEGKGQFKAM-IESGLSPKIEHYGCLVDLLGRAGCLD 450

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EAE  I+ MP EA   +  +   AC    +     R+    VN +  + G + +M N +A
Sbjct: 451 EAENLIKSMPFEANGIILSSFSFACGFSNDVTRAQRVLNQAVNMEPGNNGIYVMMRNLYA 510

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
             +RW+D  +I   +RR G KK+ G S IEV+  +
Sbjct: 511 MEERWKDVKEINGLMRRRGAKKEVGSSAIEVDSRV 545


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  278 bits (710), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 145/420 (34%), Positives = 245/420 (58%), Gaps = 6/420 (1%)

Query: 45  IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV 104
           + I  +LL  Y   K +  A ++F+ +   + V+W+ +I G   C    EA ++F  + V
Sbjct: 240 VLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLV 299

Query: 105 KP----NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLA 160
           +     +A ++ S L  C+SL    +G  +HA   ++    ++   N++L  Y + G + 
Sbjct: 300 EGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLIN 359

Query: 161 SCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
                F ++  ++ +S+  ++ G  + G  +EA  VF++M+     EP+ AT+V+++ AC
Sbjct: 360 EATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQAC-NMEPDIATMVSLIPAC 418

Query: 221 SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
           S ++AL  GK  H  +  R  L++   + N++I+MY KCG + ++ QVF+ +  +D +SW
Sbjct: 419 SHLAALQHGKCSHGSVIIR-GLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSW 477

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340
           +T+I+G  ++G G++A  LF  M      PDDVTFI LI+ACSH GLV +G   F  M+ 
Sbjct: 478 NTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTH 537

Query: 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFD 400
            Y I+P+M+HY C+VD+  R GLL+EA  FI+ MP++A+  VWGALL ACRIH+N ++  
Sbjct: 538 KYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGK 597

Query: 401 RIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           ++ + +        G F L+SN F+ A R+++  ++R   +  G KK  G SWIE+N S+
Sbjct: 598 QVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSL 657



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 119/408 (29%), Positives = 196/408 (48%), Gaps = 26/408 (6%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    + N YTF   LKACS     +    IHAH    G   D+F+  +L+  Y+    
Sbjct: 91  MLRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCAR 150

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAI----DMFCGIDVKPNANTLVSVLS 116
              A  +F  +   DVV+W  +++G +  G +  AI    DM     ++PNA+TLVS+L 
Sbjct: 151 FGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLP 210

Query: 117 ACSSLVSHKLGKAIHAHSLR---NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
             +   +   G +IHA+ LR     NE  +++  A+LD Y +C  L     +F  MP RN
Sbjct: 211 LLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRN 270

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
            V+W+ +IGG+       EA ++F++M        +  ++ + L  C+S++ L  G  +H
Sbjct: 271 DVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLH 330

Query: 234 SYIST---RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMN 290
           + I+      DL+ S    N++++MY K G +  A   F+ +A KD IS+  ++SG   N
Sbjct: 331 ALIAKSGIHADLTAS----NSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQN 386

Query: 291 GCGRQALQLFSLMIINAVFPDDVTFIALISACSH-----GGLVDQGLILFKAMSTVYEIV 345
           G   +A  +F  M    + PD  T ++LI ACSH      G    G ++ + ++    I 
Sbjct: 387 GKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSIC 446

Query: 346 PQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
             +      +DMY + G ++ +     +MP     S W  ++    IH
Sbjct: 447 NSL------IDMYAKCGKIDLSRQVFDKMPARDVVS-WNTMIAGYGIH 487



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 172/346 (49%), Gaps = 10/346 (2%)

Query: 52  LHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 108
           L  +++   +  A Q+F+ +  PD  ++  +I   S  G    AID++  +    V PN 
Sbjct: 41  LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNK 100

Query: 109 NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168
            T   VL ACS+LV  + G+ IHAH+       ++ +  A++D YIRC        +F K
Sbjct: 101 YTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAK 160

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           MP R+VV+W  M+ GYA  G    A++   +M+      PN +TLV++L   +   AL  
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQ 220

Query: 229 GKYVHSYISTRYDLSVSN---LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285
           G  +H+Y   R  L  +    L+G A+++MY KC  +  A +VF+ +  ++ ++WS +I 
Sbjct: 221 GTSIHAY-CLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIG 279

Query: 286 GLAMNGCGRQALQLFSLMIINAV-FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 344
           G  +     +A  LF  M++  + F    +  + +  C+    +  G  L  A+     I
Sbjct: 280 GFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLH-ALIAKSGI 338

Query: 345 VPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 390
              +     ++ MY +AGL+ EA  F  E+ ++   S +GALL+ C
Sbjct: 339 HADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTIS-YGALLSGC 383



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 100/232 (43%), Gaps = 20/232 (8%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M +C    +  T    + ACS     Q     H  VI  G   +  I NSL+  Y     
Sbjct: 399 MQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGK 458

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSA 117
           I  + Q+F+ +   DVVSW T+I+G    G  KEA  +F G+  +   P+  T + +++A
Sbjct: 459 IDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAA 518

Query: 118 C--SSLVS---HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK-MP- 170
           C  S LV+   H      H + +    E+ I +    +D   R G L    Y F++ MP 
Sbjct: 519 CSHSGLVTEGKHWFDTMTHKYGILPRMEHYICM----VDLLAR-GGLLDEAYQFIQSMPL 573

Query: 171 KRNVVSWTTMIGG---YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
           K +V  W  ++G    +      K+   + Q++    E   N   L N+ SA
Sbjct: 574 KADVRVWGALLGACRIHKNIDLGKQVSRIIQKL--GPEGTGNFVLLSNIFSA 623


>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
 gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score =  278 bits (710), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 149/457 (32%), Positives = 268/457 (58%), Gaps = 12/457 (2%)

Query: 14  TQALKACSLAHPHQKALE-IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           + A +A   A P  K L+ +HAH+I  G+     +   L+    + + I   H +F SV 
Sbjct: 9   SAAYEAIVRAGPRVKQLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVP 68

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKA 129
            PD   + ++I   SK       +  +  +   +V P+  T  SV+ +C+ L + ++GK 
Sbjct: 69  LPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKG 128

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           +H H++ +    +  +  A++ FY +CG +     +F +MP++++V+W +++ G+ + G 
Sbjct: 129 VHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGL 188

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSVSNLV 248
             EA+ VF +M ++   EP+ AT V++LSAC+   A+S G +VH YI S   DL+V   +
Sbjct: 189 ADEAIQVFYQMRESG-FEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVK--L 245

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN-A 307
           G A+IN+Y +CGDVG A +VF+ +   +  +W+ +IS    +G G+QA++LF+ M  +  
Sbjct: 246 GTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCG 305

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
             P++VTF+A++SAC+H GLV++G  ++K M+  Y ++P ++H+ C+VDM GRAG L+EA
Sbjct: 306 PIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEA 365

Query: 368 EAFIREMPIEAEWS---VWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
             FI ++    + +   +W A+L AC++HRN ++   I + L+  +  + G   ++SN +
Sbjct: 366 YKFIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIY 425

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           A + + ++ + IRD + R  L+K+ G S IEV    +
Sbjct: 426 ALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTY 462



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 131/245 (53%), Gaps = 3/245 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           MLS   S ++YTFT  +K+C+     +    +H H +  G   D ++Q +L+ FY    D
Sbjct: 98  MLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGD 157

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           +  A Q+F+ +    +V+W +++SG  + G   EAI +F  +     +P++ T VS+LSA
Sbjct: 158 MEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSA 217

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C+   +  LG  +H + +    + N+ L  A+++ Y RCG +     +F KM + NV +W
Sbjct: 218 CAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAW 277

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
           T MI  Y   G+ ++AV +F +ME      PN  T V VLSAC+    +  G+ V+  ++
Sbjct: 278 TAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMT 337

Query: 238 TRYDL 242
             Y L
Sbjct: 338 KSYRL 342


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  278 bits (710), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 143/463 (30%), Positives = 263/463 (56%), Gaps = 17/463 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHL-HDIFIQNSLLHFYVTVKDIFSAHQI 67
           + +T +  L ACS     +   E+HA+ ++ G L  + F+ ++L+  Y   K + S  ++
Sbjct: 301 DEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRV 360

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLVS 123
           F+ +    +  W  +I+G S+    KEA+ +F G++    +  N+ T+  V+ AC    +
Sbjct: 361 FDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGA 420

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
               +AIH   ++   + +  + N ++D Y R G +     +F KM  R++V+W TMI G
Sbjct: 421 FSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITG 480

Query: 184 YAERGFCKEAVSVFQEMEKTKEA----------EPNEATLVNVLSACSSISALSFGKYVH 233
           Y      ++A+ +  +M+  +            +PN  TL+ +L +C+++SAL+ GK +H
Sbjct: 481 YVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIH 540

Query: 234 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG 293
           +Y + + +L+    VG+A+++MY KCG + ++ +VF+ +  K+ I+W+ +I    M+G G
Sbjct: 541 AY-AIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNG 599

Query: 294 RQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
           ++A+ L  +M++  V P++VTFI++ +ACSH G+VD+GL +F  M   Y + P   HYAC
Sbjct: 600 QEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYAC 659

Query: 354 VVDMYGRAGLLEEAEAFIREMPIE-AEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           VVD+ GRAG ++EA   +  MP +  +   W +LL A RIH N E+ +   Q+L+  +  
Sbjct: 660 VVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPN 719

Query: 413 SVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
               + L++N ++ A  W+   ++R  ++  G++K+ GCSWIE
Sbjct: 720 VASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 762



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 178/328 (54%), Gaps = 14/328 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHD-IFIQNSLLHFYVTVKDIFSAHQI 67
           ++Y F   LKA +     +   +IHAHV ++G+  D + + N+L++ Y    D  + +++
Sbjct: 96  DNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKV 155

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHK--EAIDMF-CGID--VKPNANTLVSVLSACSSLV 122
           F+ +   + VSW ++IS L  C F K   A++ F C +D  V+P++ TLVSV++ACS+L 
Sbjct: 156 FDRISERNQVSWNSLISSL--CSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLP 213

Query: 123 SHK---LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
             +   +GK +HA+ LR    N+ I+ N ++  Y + G LAS   L      R++V+W T
Sbjct: 214 MPEGLMMGKQVHAYGLRKGELNSFII-NTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNT 272

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           ++    +     EA+   +EM   +  EP+E T+ +VL ACS +  L  GK +H+Y    
Sbjct: 273 VLSSLCQNEQLLEALEYLREM-VLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKN 331

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
             L  ++ VG+A+++MY  C  V    +VF+ +  +    W+ +I+G + N   ++AL L
Sbjct: 332 GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLL 391

Query: 300 FSLMIINA-VFPDDVTFIALISACSHGG 326
           F  M  +A +  +  T   ++ AC   G
Sbjct: 392 FIGMEESAGLLANSTTMAGVVPACVRSG 419



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 135/261 (51%), Gaps = 12/261 (4%)

Query: 79  WTTIISGLSKCGFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHS 134
           W  ++    +    +EA+    DM   + +KP+     ++L A + L   +LGK IHAH 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIV-LGIKPDNYAFPALLKAVADLQDMELGKQIHAHV 123

Query: 135 LR-NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
            +     +++ + N +++ Y +CG   +   +F ++ +RN VSW ++I         + A
Sbjct: 124 YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMA 183

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSI---SALSFGKYVHSYISTRYDLSVSNLVGN 250
           +  F+ M   +  EP+  TLV+V++ACS++     L  GK VH+Y   + +L  ++ + N
Sbjct: 184 LEAFRCM-LDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGEL--NSFIIN 240

Query: 251 AVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP 310
            ++ MY K G +  +  +      +D ++W+TV+S L  N    +AL+    M++  V P
Sbjct: 241 TLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEP 300

Query: 311 DDVTFIALISACSHGGLVDQG 331
           D+ T  +++ ACSH  ++  G
Sbjct: 301 DEFTISSVLPACSHLEMLRTG 321



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 101/198 (51%), Gaps = 6/198 (3%)

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           W  ++         +EAV  + +M      +P+      +L A + +  +  GK +H+++
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDM-IVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHV 123

Query: 237 STRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
             ++   V ++ V N ++N+Y KCGD G   +VF+ ++ ++++SW+++IS L        
Sbjct: 124 -YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEM 182

Query: 296 ALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA--C 353
           AL+ F  M+   V P   T +++++ACS+  +  +GL++ K +        ++  +    
Sbjct: 183 ALEAFRCMLDENVEPSSFTLVSVVTACSNLPM-PEGLMMGKQVHAYGLRKGELNSFIINT 241

Query: 354 VVDMYGRAGLLEEAEAFI 371
           +V MYG+ G L  ++  +
Sbjct: 242 LVAMYGKLGKLASSKVLL 259


>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
          Length = 560

 Score =  278 bits (710), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 155/490 (31%), Positives = 256/490 (52%), Gaps = 51/490 (10%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           + +  LKAC+     +   ++HA +I  G   D FI +  L    ++ +      +FN V
Sbjct: 75  SISTLLKACTTTSTLE---QVHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNGV 131

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
             P  V W T I G S+       + +F  +   D  P+  T  S++ ACS +   K G 
Sbjct: 132 SSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGV 191

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
           A H  ++R     ++ +  +++D Y +CG +     +F +M +RNVVSWT MI GYA   
Sbjct: 192 AFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFS 251

Query: 189 FCKEAVSVFQEMEK-------------------------------------------TKE 205
              EA  +F EM +                                           +  
Sbjct: 252 DLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNRDVVAWSALISGN 311

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGI 264
            +P+E  +V+++SACS + +L   K+V  Y+  +  D+  ++++  A+I+M  KCG +  
Sbjct: 312 VKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIA-ALIDMNAKCGSMDR 370

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
           A ++F  +  +D IS+ +++ GL+++GCG QA+ LFS M+   + PDDV F  +++ACS 
Sbjct: 371 ATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSR 430

Query: 325 GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 384
            GLVD+G   F++M T Y IVP   HYAC+VD+ GRAG L+EA   ++ MP+E     WG
Sbjct: 431 AGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWG 490

Query: 385 ALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444
           ALL AC++H + E+ + +   L   +  + G + L+SN +A A++W D + +R+++R  G
Sbjct: 491 ALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERG 550

Query: 445 LKKKTGCSWI 454
           ++K  GCSWI
Sbjct: 551 IRKIPGCSWI 560



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 156/355 (43%), Gaps = 60/355 (16%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +T+   +KACS     ++ +  H   +  G   D+F+  SL+  Y    +I  A ++F
Sbjct: 170 DKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVF 229

Query: 69  NSVVFPDVVSWT-------------------------------TIISGLSKCGFHKEAID 97
           + +   +VVSWT                                IISG  KCG  + A  
Sbjct: 230 DEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARK 289

Query: 98  MFCGI----------------DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR---NL 138
           MF  +                +VKP+   +VS++SACS + S +L K +  +  +   ++
Sbjct: 290 MFDEMPHRNRDVVAWSALISGNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDV 349

Query: 139 NENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQ 198
           +  ++I   A++D   +CGS+     LF +MPKR+++S+ +M+ G +  G   +AVS+F 
Sbjct: 350 HRAHVI--AALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFS 407

Query: 199 EMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVK 258
            M   +   P++     +L+ACS    +  G Y    + T Y +  S      ++++  +
Sbjct: 408 RM-LNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGR 466

Query: 259 CGDVGIAIQVFNMLAYKDKI-SWSTVISGLAMNGCGRQ-----ALQLFSLMIINA 307
            G +  A ++   +  +    +W  ++    ++ C  +     A QLF L   NA
Sbjct: 467 AGRLKEAYELLKSMPVEPHAGAWGALLGACKLH-CDIELGEVVADQLFELEPQNA 520



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 144/317 (45%), Gaps = 57/317 (17%)

Query: 107 NANTLVSVLSACSSLVSHKLGKAIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGY- 164
             +++ ++L AC++  + +    +HA  +R  L++++ I+      F   C SL++  Y 
Sbjct: 72  TTSSISTLLKACTTTSTLE---QVHARIIRKGLHQDHFIISQ----FLTLCNSLSNFSYT 124

Query: 165 --LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS 222
             +F  +   + V W T I GY+E       VS+F  M+++ +A P++ T  +++ ACS 
Sbjct: 125 TSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRS-DAVPDKFTYPSLIKACSK 183

Query: 223 ISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWST 282
           +  +  G   H   + R  +     V  ++I++Y KCG++  A +VF+ +  ++ +SW+ 
Sbjct: 184 VCGVKEGVAFHGS-AVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTA 242

Query: 283 VISGLA--------------------------MNG---CG--RQALQLF----------- 300
           +I+G A                          ++G   CG  R A ++F           
Sbjct: 243 MIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNRDVV 302

Query: 301 --SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMY 358
             S +I   V PD+   ++L+SACS  G ++    +   +      V +    A ++DM 
Sbjct: 303 AWSALISGNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMN 362

Query: 359 GRAGLLEEAEAFIREMP 375
            + G ++ A     EMP
Sbjct: 363 AKCGSMDRATKLFEEMP 379



 Score = 45.4 bits (106), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 5/179 (2%)

Query: 196 VFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINM 255
            F +   T  +    +++  +L AC++ S L   + VH+ I  R  L   + + +  + +
Sbjct: 59  TFPDYLPTLRSFDTTSSISTLLKACTTTSTL---EQVHARI-IRKGLHQDHFIISQFLTL 114

Query: 256 YVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTF 315
                +      VFN ++    + W+T I G + N      + LF  M  +   PD  T+
Sbjct: 115 CNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTY 174

Query: 316 IALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
            +LI ACS    V +G + F   +    +   +     ++D+YG+ G +  A     EM
Sbjct: 175 PSLIKACSKVCGVKEG-VAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEM 232


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  278 bits (710), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 143/463 (30%), Positives = 263/463 (56%), Gaps = 17/463 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHL-HDIFIQNSLLHFYVTVKDIFSAHQI 67
           + +T +  L ACS     +   E+HA+ ++ G L  + F+ ++L+  Y   K + S  ++
Sbjct: 301 DEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRV 360

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLVS 123
           F+ +    +  W  +I+G S+    KEA+ +F G++    +  N+ T+  V+ AC    +
Sbjct: 361 FDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGA 420

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
               +AIH   ++   + +  + N ++D Y R G +     +F KM  R++V+W TMI G
Sbjct: 421 FSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITG 480

Query: 184 YAERGFCKEAVSVFQEMEKTKEA----------EPNEATLVNVLSACSSISALSFGKYVH 233
           Y      ++A+ +  +M+  +            +PN  TL+ +L +C+++SAL+ GK +H
Sbjct: 481 YVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIH 540

Query: 234 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG 293
           +Y + + +L+    VG+A+++MY KCG + ++ +VF+ +  K+ I+W+ +I    M+G G
Sbjct: 541 AY-AIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNG 599

Query: 294 RQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
           ++A+ L  +M++  V P++VTFI++ +ACSH G+VD+GL +F  M   Y + P   HYAC
Sbjct: 600 QEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYAC 659

Query: 354 VVDMYGRAGLLEEAEAFIREMPIE-AEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           VVD+ GRAG ++EA   +  MP +  +   W +LL A RIH N E+ +   Q+L+  +  
Sbjct: 660 VVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPN 719

Query: 413 SVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
               + L++N ++ A  W+   ++R  ++  G++K+ GCSWIE
Sbjct: 720 VASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 762



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 178/328 (54%), Gaps = 14/328 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHD-IFIQNSLLHFYVTVKDIFSAHQI 67
           ++Y F   LKA +     +   +IHAHV ++G+  D + + N+L++ Y    D  + +++
Sbjct: 96  DNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKV 155

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHK--EAIDMF-CGID--VKPNANTLVSVLSACSSLV 122
           F+ +   + VSW ++IS L  C F K   A++ F C +D  V+P++ TLVSV++ACS+L 
Sbjct: 156 FDRISERNQVSWNSLISSL--CSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLP 213

Query: 123 SHK---LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
             +   +GK +HA+ LR    N+ I+ N ++  Y + G LAS   L      R++V+W T
Sbjct: 214 MPEGLMMGKQVHAYGLRKGELNSFII-NTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNT 272

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           ++    +     EA+   +EM   +  EP+E T+ +VL ACS +  L  GK +H+Y    
Sbjct: 273 VLSSLCQNEQLLEALEYLREM-VLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKN 331

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
             L  ++ VG+A+++MY  C  V    +VF+ +  +    W+ +I+G + N   ++AL L
Sbjct: 332 GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLL 391

Query: 300 FSLMIINA-VFPDDVTFIALISACSHGG 326
           F  M  +A +  +  T   ++ AC   G
Sbjct: 392 FIGMEESAGLLANSTTMAGVVPACVRSG 419



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 135/261 (51%), Gaps = 12/261 (4%)

Query: 79  WTTIISGLSKCGFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHS 134
           W  ++    +    +EA+    DM   + +KP+     ++L A + L   +LGK IHAH 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIV-LGIKPDNYAFPALLKAVADLQDMELGKQIHAHV 123

Query: 135 LR-NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
            +     +++ + N +++ Y +CG   +   +F ++ +RN VSW ++I         + A
Sbjct: 124 YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMA 183

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSI---SALSFGKYVHSYISTRYDLSVSNLVGN 250
           +  F+ M   +  EP+  TLV+V++ACS++     L  GK VH+Y   + +L  ++ + N
Sbjct: 184 LEAFRCM-LDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGEL--NSFIIN 240

Query: 251 AVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP 310
            ++ MY K G +  +  +      +D ++W+TV+S L  N    +AL+    M++  V P
Sbjct: 241 TLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEP 300

Query: 311 DDVTFIALISACSHGGLVDQG 331
           D+ T  +++ ACSH  ++  G
Sbjct: 301 DEFTISSVLPACSHLEMLRTG 321



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 101/198 (51%), Gaps = 6/198 (3%)

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           W  ++         +EAV  + +M      +P+      +L A + +  +  GK +H+++
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDM-IVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHV 123

Query: 237 STRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
             ++   V ++ V N ++N+Y KCGD G   +VF+ ++ ++++SW+++IS L        
Sbjct: 124 -YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEM 182

Query: 296 ALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA--C 353
           AL+ F  M+   V P   T +++++ACS+  +  +GL++ K +        ++  +    
Sbjct: 183 ALEAFRCMLDENVEPSSFTLVSVVTACSNLPM-PEGLMMGKQVHAYGLRKGELNSFIINT 241

Query: 354 VVDMYGRAGLLEEAEAFI 371
           +V MYG+ G L  ++  +
Sbjct: 242 LVAMYGKLGKLASSKVLL 259


>gi|224097410|ref|XP_002310922.1| predicted protein [Populus trichocarpa]
 gi|222850742|gb|EEE88289.1| predicted protein [Populus trichocarpa]
          Length = 554

 Score =  278 bits (710), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 146/445 (32%), Positives = 244/445 (54%), Gaps = 49/445 (11%)

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           + SAH +F  +  P  + W  +I   ++     ++I  F  +   D +P+A+T   +L+A
Sbjct: 76  LLSAHYVFKDIQSPSTILWNQMIRAHARSQTPAKSIQFFNQMLLTDSRPDAHTYSFLLAA 135

Query: 118 CSSLVSHKLGKAIHAHSLRN-------------------------------------LNE 140
           C+S +S + G+ +H+  L N                                     ++E
Sbjct: 136 CTSSLSLREGQQVHSKVLTNGYYSSNVFLMSKLVNFYAAVVGGEGAALASARKVFDDMSE 195

Query: 141 NNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEM 200
            N++  N++L  Y+R G+L     +F +MP+RNVVSWTTMI GYA+ G CK+A+++F +M
Sbjct: 196 RNVVCWNSMLAGYMRRGNLDGARRIFYEMPERNVVSWTTMISGYAKNGKCKQALNLFDQM 255

Query: 201 EKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV---GNAVINMYV 257
            K    E ++  L+  L+AC+ +  L  G ++HSYI   +  S   ++    NA+I+MY 
Sbjct: 256 RKAG-VELDQVVLLAALTACAELGDLKMGMWIHSYIQDTFVGSNQRVLVSLNNALIHMYA 314

Query: 258 KCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI---INAVFPDDVT 314
            CG +  A +VF  +  +  +SW+++I+  A  G  +  L++F  M     +   PD +T
Sbjct: 315 SCGMIDEAYEVFRWMPERSAVSWTSLITAFAKQGYAQAVLEIFRSMQRLGTSEARPDGIT 374

Query: 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
           FI ++ ACSH GLVD+G  LFK M   + I P+++HY C+VD+  RAG L+EA+  I  M
Sbjct: 375 FIGVLCACSHAGLVDEGRQLFKDMIQRWGIKPRIEHYGCMVDLLSRAGFLDEAQELIATM 434

Query: 375 PIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV--SVGTFALMSNTFAGADRWED 432
           P++   +VWGALL  CR +RN E+   + Q LV +     + G  +L++  +A A++W+D
Sbjct: 435 PVKPNNAVWGALLGGCRFYRNAELASLVSQKLVAEPDPDKAAGYLSLLAQVYASAEKWQD 494

Query: 433 TNKIRDEIRRMGLKKKTGCSWIEVN 457
              +R ++  MG+KK  G SW+++N
Sbjct: 495 VATVRQKMVAMGVKKPAGQSWVQIN 519



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 144/288 (50%), Gaps = 46/288 (15%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLH-DIFIQNSLLHFYVTV- 58
           ML   S  + +T++  L AC+ +   ++  ++H+ V+  G+   ++F+ + L++FY  V 
Sbjct: 117 MLLTDSRPDAHTYSFLLAACTSSLSLREGQQVHSKVLTNGYYSSNVFLMSKLVNFYAAVV 176

Query: 59  ----------KDIF-------------------------SAHQIFNSVVFPDVVSWTTII 83
                     + +F                          A +IF  +   +VVSWTT+I
Sbjct: 177 GGEGAALASARKVFDDMSERNVVCWNSMLAGYMRRGNLDGARRIFYEMPERNVVSWTTMI 236

Query: 84  SGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNE 140
           SG +K G  K+A+++F  +    V+ +   L++ L+AC+ L   K+G  IH++       
Sbjct: 237 SGYAKNGKCKQALNLFDQMRKAGVELDQVVLLAALTACAELGDLKMGMWIHSYIQDTFVG 296

Query: 141 NN----IILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSV 196
           +N    + L+NA++  Y  CG +     +F  MP+R+ VSWT++I  +A++G+ +  + +
Sbjct: 297 SNQRVLVSLNNALIHMYASCGMIDEAYEVFRWMPERSAVSWTSLITAFAKQGYAQAVLEI 356

Query: 197 FQEMEK--TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
           F+ M++  T EA P+  T + VL ACS    +  G+ +   +  R+ +
Sbjct: 357 FRSMQRLGTSEARPDGITFIGVLCACSHAGLVDEGRQLFKDMIQRWGI 404



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 93/208 (44%), Gaps = 14/208 (6%)

Query: 16  ALKACSLAHPHQKALEIHAHVIE--YGHLHDIFI--QNSLLHFYVTVKDIFSAHQIFNSV 71
           AL AC+     +  + IH+++ +   G    + +   N+L+H Y +   I  A+++F  +
Sbjct: 270 ALTACAELGDLKMGMWIHSYIQDTFVGSNQRVLVSLNNALIHMYASCGMIDEAYEVFRWM 329

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI------DVKPNANTLVSVLSACSSLVSHK 125
                VSWT++I+  +K G+ +  +++F  +      + +P+  T + VL ACS      
Sbjct: 330 PERSAVSWTSLITAFAKQGYAQAVLEIFRSMQRLGTSEARPDGITFIGVLCACSHAGLVD 389

Query: 126 LGKAIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIGG 183
            G+ +    ++    +  I     ++D   R G L     L   MP K N   W  ++GG
Sbjct: 390 EGRQLFKDMIQRWGIKPRIEHYGCMVDLLSRAGFLDEAQELIATMPVKPNNAVWGALLGG 449

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEA 211
              R +    ++     +   E +P++A
Sbjct: 450 C--RFYRNAELASLVSQKLVAEPDPDKA 475


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  277 bits (709), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 148/449 (32%), Positives = 252/449 (56%), Gaps = 6/449 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           TFT AL AC+     +    +     + G+  D+F+ +SLLH Y     +  A ++F+ +
Sbjct: 110 TFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFDRM 169

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              D V+W+T+++G    G   +AI M+  +    VK +   ++ V+ AC++  + ++G 
Sbjct: 170 PRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGA 229

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
           ++H H LR+    +++   +++D Y + G L     +F  M  RN VSW+ MI G+A+ G
Sbjct: 230 SVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNG 289

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
              EA+ +F+ M+ +   +P+   LV+ L ACS+I  L  G+ VH +I  R+D +   ++
Sbjct: 290 QSDEALRLFRNMQASG-IQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNC--IL 346

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
           G A I+MY KCG +  A  +FNM++ +D I W+ +I+    +G G+ AL LF  M    +
Sbjct: 347 GTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGM 406

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD  TF +L+SA SH GLV++G + F  M   ++I P  +HY C+VD+  R+GL+EEA 
Sbjct: 407 RPDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLARSGLVEEAS 466

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
             +  M  E   ++W ALL+ C  ++  E+ + I  +++  +   VG  AL+SN +A   
Sbjct: 467 DLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATK 526

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +W+   ++R  ++  G KK  GCS IE+ 
Sbjct: 527 KWDKVRQVRKLMKDSGSKKMPGCSSIEIR 555



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 165/314 (52%), Gaps = 17/314 (5%)

Query: 87  SKCGFHKEAIDMFCGID--VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
           S+ G    A+ +F  +    +P++ T    LSAC+ L   + G+++   +     ++++ 
Sbjct: 85  SRRGSPASALRVFRALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVF 144

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           + +++L  Y R G++     +F +MP+R+ V+W+TM+ G+   G   +A+ +++ M +  
Sbjct: 145 VCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRM-RED 203

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
             + +E  ++ V+ AC++   +  G  VH ++  R+ + +  +   ++++MY K G + +
Sbjct: 204 GVKGDEVVMIGVIQACTAARNVRMGASVHGHL-LRHGMRMDVVTATSLVDMYAKNGLLDV 262

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
           A +VF ++ +++ +SWS +ISG A NG   +AL+LF  M  + + PD    ++ + ACS+
Sbjct: 263 ACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSN 322

Query: 325 GGLVDQGLILFKAMSTVYEIVPQMQHYACV-----VDMYGRAGLLEEAEAFIREMPIEAE 379
            G +  G        +V+  + +   + C+     +DMY + G L  A+     M  + +
Sbjct: 323 IGFLKLG-------RSVHGFIVRRFDFNCILGTAAIDMYSKCGSLASAQMLF-NMISDRD 374

Query: 380 WSVWGALLNACRIH 393
             +W A++  C  H
Sbjct: 375 LILWNAMIACCGAH 388


>gi|326507322|dbj|BAJ95738.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 593

 Score =  277 bits (709), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 152/482 (31%), Positives = 263/482 (54%), Gaps = 45/482 (9%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
            K+C+L     +  ++H H +  G L D+F+  +L+ FY    D+ SA   F+ +   D 
Sbjct: 77  FKSCALTASSCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSAFDEMPVKDP 136

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGID--------------------------------- 103
           +    +I+G SK G   +A  +F G++                                 
Sbjct: 137 IPINCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALALFDRMLSE 196

Query: 104 -VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNL----NENNIILDNAILDFYIRCGS 158
             +PNA T+ SV S C+       GK +     R+L    +  N+I+  A+++ Y++C +
Sbjct: 197 GARPNAITITSVFSICAKSGDLDTGKRV-----RDLIGEDDLQNVIVHTALMEMYVKCRA 251

Query: 159 LASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLS 218
           +      F +M +R+VV+W+TMI GYA+ G   E++ +F+ M+ T +  PNE TLV V+S
Sbjct: 252 IDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKAT-DCRPNEVTLVGVIS 310

Query: 219 ACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI 278
           AC+ + +    + + +Y   +  L +++ +G+A+I+MY +CG VG A  VF+ +  K  I
Sbjct: 311 ACAQLGSDELVEQIGNYAENQR-LPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVI 369

Query: 279 SWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM 338
           +W+++I GLAMNG    A+ L+  M  N V P+++TF+AL++AC+H GLVDQG+  F+ M
Sbjct: 370 TWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEM 429

Query: 339 STVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEM 398
              + + PQ++H AC+VD+  ++G L EA  FI +M +E    +W  LL++CR H + E+
Sbjct: 430 KREHLVSPQVEHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADVEL 489

Query: 399 FDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNP 458
                + L+  +  +   + L+SN +A A  W D  +IRD +R   ++K +  SWI+++ 
Sbjct: 490 AKLASRKLLAMEPDNSSIYVLLSNIYADAGLWGDAREIRDLMRSKNVQKLSAYSWIKLDG 549

Query: 459 SI 460
            +
Sbjct: 550 EV 551



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 160/359 (44%), Gaps = 64/359 (17%)

Query: 63  SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKP---NANTLVSVLSACS 119
           +A  +F++V  P     +T +S LS+   H + +  F  +  K     +  +  V  +C+
Sbjct: 22  AARNLFDAVPRPAPALCSTFLSSLSRASSHHDLLQTFSSMHRKGAYVPSGCVPLVFKSCA 81

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC----------------- 162
              S   G+ +H H+L      ++ +  A++DFY + G + S                  
Sbjct: 82  LTASSCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSAFDEMPVKDPIPINC 141

Query: 163 ---GY-----------LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
              GY           LF  M +R   SW +MI  YA  G  +EA+++F  M  ++ A P
Sbjct: 142 LITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALALFDRM-LSEGARP 200

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           N  T+ +V S C+    L  GK V   I    D   + +V  A++ MYVKC  +  A + 
Sbjct: 201 NAITITSVFSICAKSGDLDTGKRVRDLIGE--DDLQNVIVHTALMEMYVKCRAIDDARRE 258

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F+ ++ +D ++WST+I+G A NG   ++L+LF  M      P++VT + +ISAC+  G  
Sbjct: 259 FDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLG-- 316

Query: 329 DQGLILFKAMSTVYEIVPQMQHYA-------------CVVDMYGRAGLLEEAEAFIREM 374
                         E+V Q+ +YA              ++DMY R G +  A +    M
Sbjct: 317 ------------SDELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRM 363



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 147/289 (50%), Gaps = 6/289 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           MLS  +  N  T T     C+ +        +   +I    L ++ +  +L+  YV  + 
Sbjct: 193 MLSEGARPNAITITSVFSICAKSGDLDTGKRVR-DLIGEDDLQNVIVHTALMEMYVKCRA 251

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSA 117
           I  A + F+ +   DVV+W+T+I+G ++ G   E++++F      D +PN  TLV V+SA
Sbjct: 252 IDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISA 311

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C+ L S +L + I  ++          L +A++D Y RCG +     +F +M ++ V++W
Sbjct: 312 CAQLGSDELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITW 371

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
            +MI G A  GF ++A+S++++M +    +PNE T V +L+AC+    +  G      + 
Sbjct: 372 NSMIRGLAMNGFAEDAISLYEKMAENG-VQPNEITFVALLAACTHAGLVDQGMAFFEEMK 430

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDKISWSTVIS 285
             + +S        ++++  K G +  A + + +M    + + W+T++S
Sbjct: 431 REHLVSPQVEHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLS 479


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  277 bits (709), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 145/420 (34%), Positives = 245/420 (58%), Gaps = 6/420 (1%)

Query: 45  IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV 104
           + I  +LL  Y   K +  A ++F+ +   + V+W+ +I G   C    EA ++F  + V
Sbjct: 240 VLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLV 299

Query: 105 KP----NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLA 160
           +     +A ++ S L  C+SL    +G  +HA   ++    ++   N++L  Y + G + 
Sbjct: 300 EGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLIN 359

Query: 161 SCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
                F ++  ++ +S+  ++ G  + G  +EA  VF++M+     EP+ AT+V+++ AC
Sbjct: 360 EATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQAC-NMEPDIATMVSLIPAC 418

Query: 221 SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
           S ++AL  GK  H  +  R  L++   + N++I+MY KCG + ++ QVF+ +  +D +SW
Sbjct: 419 SHLAALQHGKCSHGSVIIR-GLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSW 477

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340
           +T+I+G  ++G G++A  LF  M      PDDVTFI LI+ACSH GLV +G   F  M+ 
Sbjct: 478 NTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTH 537

Query: 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFD 400
            Y I+P+M+HY C+VD+  R GLL+EA  FI+ MP++A+  VWGALL ACRIH+N ++  
Sbjct: 538 KYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGK 597

Query: 401 RIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           ++ + +        G F L+SN F+ A R+++  ++R   +  G KK  G SWIE+N S+
Sbjct: 598 QVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSL 657



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 119/408 (29%), Positives = 196/408 (48%), Gaps = 26/408 (6%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    + N YTF   LKACS     +    IHAH    G   D+F+  +L+  Y+    
Sbjct: 91  MLRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCAR 150

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAI----DMFCGIDVKPNANTLVSVLS 116
              A  +F  +   DVV+W  +++G +  G +  AI    DM     ++PNA+TLVS+L 
Sbjct: 151 FGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLP 210

Query: 117 ACSSLVSHKLGKAIHAHSLR---NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
             +   +   G +IHA+ LR     NE  +++  A+LD Y +C  L     +F  MP RN
Sbjct: 211 LLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRN 270

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
            V+W+ +IGG+       EA ++F++M        +  ++ + L  C+S++ L  G  +H
Sbjct: 271 DVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLH 330

Query: 234 SYIST---RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMN 290
           + I+      DL+ S    N++++MY K G +  A   F+ +A KD IS+  ++SG   N
Sbjct: 331 ALIAKSGIHADLTAS----NSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQN 386

Query: 291 GCGRQALQLFSLMIINAVFPDDVTFIALISACSH-----GGLVDQGLILFKAMSTVYEIV 345
           G   +A  +F  M    + PD  T ++LI ACSH      G    G ++ + ++    I 
Sbjct: 387 GKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSIC 446

Query: 346 PQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
             +      +DMY + G ++ +     +MP     S W  ++    IH
Sbjct: 447 NSL------IDMYAKCGKIDLSRQVFDKMPARDVVS-WNTMIAGYGIH 487



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 172/346 (49%), Gaps = 10/346 (2%)

Query: 52  LHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA 108
           L  +++   +  A Q+F+ +  PD  ++  +I   S  G    AID++  +    V PN 
Sbjct: 41  LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNK 100

Query: 109 NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168
            T   VL ACS+LV  + G+ IHAH+       ++ +  A++D YIRC        +F K
Sbjct: 101 YTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAK 160

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           MP R+VV+W  M+ GYA  G    A++   +M+      PN +TLV++L   +   AL  
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQ 220

Query: 229 GKYVHSYISTRYDLSVSN---LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285
           G  +H+Y   R  L  +    L+G A+++MY KC  +  A +VF+ +  ++ ++WS +I 
Sbjct: 221 GTSIHAY-CLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIG 279

Query: 286 GLAMNGCGRQALQLFSLMIINAV-FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 344
           G  +     +A  LF  M++  + F    +  + +  C+    +  G  L  A+     I
Sbjct: 280 GFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLH-ALIAKSGI 338

Query: 345 VPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 390
              +     ++ MY +AGL+ EA  F  E+ ++   S +GALL+ C
Sbjct: 339 HADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTIS-YGALLSGC 383



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 100/232 (43%), Gaps = 20/232 (8%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M +C    +  T    + ACS     Q     H  VI  G   +  I NSL+  Y     
Sbjct: 399 MQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGK 458

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSA 117
           I  + Q+F+ +   DVVSW T+I+G    G  KEA  +F G+  +   P+  T + +++A
Sbjct: 459 IDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAA 518

Query: 118 C--SSLVS---HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK-MP- 170
           C  S LV+   H      H + +    E+ I +    +D   R G L    Y F++ MP 
Sbjct: 519 CSHSGLVTEGKHWFDTMTHKYGILPRMEHYICM----VDLLAR-GGLLDEAYQFIQSMPL 573

Query: 171 KRNVVSWTTMIGG---YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
           K +V  W  ++G    +      K+   + Q++    E   N   L N+ SA
Sbjct: 574 KADVRVWGALLGACRIHKNIDLGKQVSRIIQKL--GPEGTGNFVLLSNIFSA 623


>gi|297804658|ref|XP_002870213.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316049|gb|EFH46472.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 608

 Score =  277 bits (709), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 158/470 (33%), Positives = 260/470 (55%), Gaps = 14/470 (2%)

Query: 5   PSSYNHYTF--TQALKACSLAHPHQKALE--IHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           P + N + +  T+A     L+ P    L   +HA  ++ G   + F  N L++ YV +K+
Sbjct: 13  PHNQNEFFYLKTKAFLVHKLSEPTDLFLTNLLHALTLKLGFASNTFTVNHLVNSYVKLKE 72

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLS 116
           I +A ++F+ +  P+VVSWT++ISG +  G  + A+ MF  +     V PN  T  SV  
Sbjct: 73  INTARKVFDEMCEPNVVSWTSVISGYNDMGQPQTALSMFQEMHEDRSVPPNEYTFASVFK 132

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK--RNV 174
           ACS+L   ++GK IHA    +    NI++ ++++D Y +C  +     +F  M    RNV
Sbjct: 133 ACSALAESRIGKNIHARLEVSGLRRNIVVSSSLVDMYGKCNDVEMARRVFDSMIGYGRNV 192

Query: 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE-PNEATLVNVLSACSSISALSFGKYVH 233
           VSWT+MI  YA+     EA+ +F+       ++ PN+  L +V++A SS+  L +G+  H
Sbjct: 193 VSWTSMITAYAQNARGHEAIELFRSFNADSTSDRPNQFMLASVINASSSLGRLQWGQISH 252

Query: 234 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG 293
             + TR     +N+V  ++++MY KCG +  A ++F  +     IS++++I   A +G G
Sbjct: 253 GLV-TRGGYESNNVVATSLLDMYAKCGSLTCAEKIFFRIRCHSVISYTSMIMAKAKHGLG 311

Query: 294 RQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
             ALQLF  M+   + P+ VT + ++ ACSH GLV++GL    +M+  Y ++P  +HY C
Sbjct: 312 EAALQLFDEMVAGRIKPNYVTLLGVLHACSHSGLVNEGLEFLNSMAEKYGVIPDSRHYTC 371

Query: 354 VVDMYGRAGLLEEAEAFIREMPIEAEWS--VWGALLNACRIHRNDEMFDRIRQDLVNKKG 411
           VVDM GR G ++EA    + + + AE    +WGALL+A R+H   E+     + L+    
Sbjct: 372 VVDMLGRFGRVDEAYDLAKTIDVGAEQGALLWGALLSAGRLHGRVEIVSEASKRLIQSNQ 431

Query: 412 VSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
                +  +SN +A A  WED+  +R E++R G  K+  CSWIE   S++
Sbjct: 432 QVTSAYIALSNAYAVAGGWEDSESLRLEMKRSGNVKERACSWIENKDSVY 481


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  277 bits (709), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 143/463 (30%), Positives = 263/463 (56%), Gaps = 17/463 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHL-HDIFIQNSLLHFYVTVKDIFSAHQI 67
           + +T +  L ACS     +   E+HA+ ++ G L  + F+ ++L+  Y   K + S  ++
Sbjct: 214 DEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRV 273

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLVS 123
           F+ +    +  W  +I+G S+    KEA+ +F G++    +  N+ T+  V+ AC    +
Sbjct: 274 FDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGA 333

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
               +AIH   ++   + +  + N ++D Y R G +     +F KM  R++V+W TMI G
Sbjct: 334 FSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITG 393

Query: 184 YAERGFCKEAVSVFQEMEKTKEA----------EPNEATLVNVLSACSSISALSFGKYVH 233
           Y      ++A+ +  +M+  +            +PN  TL+ +L +C+++SAL+ GK +H
Sbjct: 394 YVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIH 453

Query: 234 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG 293
           +Y + + +L+    VG+A+++MY KCG + ++ +VF+ +  K+ I+W+ +I    M+G G
Sbjct: 454 AY-AIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNG 512

Query: 294 RQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
           ++A+ L  +M++  V P++VTFI++ +ACSH G+VD+GL +F  M   Y + P   HYAC
Sbjct: 513 QEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYAC 572

Query: 354 VVDMYGRAGLLEEAEAFIREMPIE-AEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           VVD+ GRAG ++EA   +  MP +  +   W +LL A RIH N E+ +   Q+L+  +  
Sbjct: 573 VVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPN 632

Query: 413 SVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
               + L++N ++ A  W+   ++R  ++  G++K+ GCSWIE
Sbjct: 633 VASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 675



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 178/328 (54%), Gaps = 14/328 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHD-IFIQNSLLHFYVTVKDIFSAHQI 67
           ++Y F   LKA +     +   +IHAHV ++G+  D + + N+L++ Y    D  + +++
Sbjct: 9   DNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKV 68

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHK--EAIDMF-CGID--VKPNANTLVSVLSACSSLV 122
           F+ +   + VSW ++IS L  C F K   A++ F C +D  V+P++ TLVSV++ACS+L 
Sbjct: 69  FDRISERNQVSWNSLISSL--CSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLP 126

Query: 123 SHK---LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
             +   +GK +HA+ LR    N+ I+ N ++  Y + G LAS   L      R++V+W T
Sbjct: 127 MPEGLMMGKQVHAYGLRKGELNSFII-NTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNT 185

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           ++    +     EA+   +EM   +  EP+E T+ +VL ACS +  L  GK +H+Y    
Sbjct: 186 VLSSLCQNEQLLEALEYLREM-VLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKN 244

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
             L  ++ VG+A+++MY  C  V    +VF+ +  +    W+ +I+G + N   ++AL L
Sbjct: 245 GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLL 304

Query: 300 FSLMIINA-VFPDDVTFIALISACSHGG 326
           F  M  +A +  +  T   ++ AC   G
Sbjct: 305 FIGMEESAGLLANSTTMAGVVPACVRSG 332



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 125/234 (53%), Gaps = 7/234 (2%)

Query: 102 IDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR-NLNENNIILDNAILDFYIRCGSLA 160
           + +KP+     ++L A + L   +LGK IHAH  +     +++ + N +++ Y +CG   
Sbjct: 4   LGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFG 63

Query: 161 SCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
           +   +F ++ +RN VSW ++I         + A+  F+ M   +  EP+  TLV+V++AC
Sbjct: 64  AVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCM-LDENVEPSSFTLVSVVTAC 122

Query: 221 SSI---SALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK 277
           S++     L  GK VH+Y   + +L  ++ + N ++ MY K G +  +  +      +D 
Sbjct: 123 SNLPMPEGLMMGKQVHAYGLRKGEL--NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDL 180

Query: 278 ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
           ++W+TV+S L  N    +AL+    M++  V PD+ T  +++ ACSH  ++  G
Sbjct: 181 VTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTG 234



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 91/168 (54%), Gaps = 5/168 (2%)

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIA 265
           +P+      +L A + +  +  GK +H+++  ++   V ++ V N ++N+Y KCGD G  
Sbjct: 7   KPDNYAFPALLKAVADLQDMELGKQIHAHV-YKFGYGVDSVTVANTLVNLYRKCGDFGAV 65

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
            +VF+ ++ ++++SW+++IS L        AL+ F  M+   V P   T +++++ACS+ 
Sbjct: 66  YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 125

Query: 326 GLVDQGLILFKAMSTVYEIVPQMQHYA--CVVDMYGRAGLLEEAEAFI 371
            +  +GL++ K +        ++  +    +V MYG+ G L  ++  +
Sbjct: 126 PM-PEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLL 172


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  277 bits (709), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 152/458 (33%), Positives = 257/458 (56%), Gaps = 6/458 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +TF   L   +     +K +++H  VI+ G    IF+ NS+++ Y     +  A  +F
Sbjct: 192 NPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVF 251

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           +S+   + VSW ++I+G    G   EA ++F  +    VK       +V+  C+++    
Sbjct: 252 DSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMS 311

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK-RNVVSWTTMIGGY 184
             K +H   ++N ++ ++ +  A++  Y +C  +     LF  M   +NVVSWT +I GY
Sbjct: 312 FAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGY 371

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA-LSFGKYVHSYISTRYDLS 243
            + G    A+++F +M + +  EPNE T  +VL+AC++ +A +  GK  HS  S +   S
Sbjct: 372 VQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHS-CSIKSGFS 430

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
            +  V +A++ MY K G++  A +VF     +D +SW+++ISG A +GCG+++L++F  M
Sbjct: 431 NALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEM 490

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
               +  D +TFI +ISAC+H GLV++G   F  M   Y IVP M+HY+C+VD+Y RAG+
Sbjct: 491 RSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGM 550

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           LE+A   I +MP  A  ++W  LL ACR+H N ++ +   + L++ +      + L+SN 
Sbjct: 551 LEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNI 610

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           +A A  W++  K+R  +    +KK+ G SWIEV    F
Sbjct: 611 YATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTF 648



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 207/411 (50%), Gaps = 22/411 (5%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           LK C          ++H   I+ G + D+ +  SL+  Y+  + +    ++F+ +   +V
Sbjct: 99  LKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNV 158

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAH 133
           VSWT++++G  + G +++A+ +F  +    +KPN  T  +VL   ++  + + G  +H  
Sbjct: 159 VSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTM 218

Query: 134 SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
            +++  ++ I + N++++ Y +   ++    +F  M  RN VSW +MI G+   G   EA
Sbjct: 219 VIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEA 278

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI---STRYDLSVSNLVGN 250
             +F  M + +  +  +     V+  C++I  +SF K +H  +    + +DL++      
Sbjct: 279 FELFYRM-RLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIK----T 333

Query: 251 AVINMYVKCGDVGIAIQVFNML-AYKDKISWSTVISGLAMNGCGRQALQLFSLMII-NAV 308
           A++  Y KC ++  A ++F M+   ++ +SW+ +ISG   NG   +A+ LF  M     V
Sbjct: 334 ALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGV 393

Query: 309 FPDDVTFIALISAC-SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
            P++ TF ++++AC +    V+QG   F + S        +   + +V MY + G +E A
Sbjct: 394 EPNEFTFSSVLNACAAPTASVEQGK-QFHSCSIKSGFSNALCVSSALVTMYAKRGNIESA 452

Query: 368 -EAFIREMPIEAEWSVWGALLNACRIH----RNDEMFDRIRQDLVNKKGVS 413
            E F R+  ++ +   W ++++    H    ++ ++F+ +R   +   G++
Sbjct: 453 NEVFKRQ--VDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGIT 501



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 136/264 (51%), Gaps = 5/264 (1%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 120
           + Q+F+      +     ++   S+   +KEA+++F G+       + ++L  VL  C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           L    +GK +H   ++     ++ +  +++D Y++  S+     +F +M  +NVVSWT++
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           + GY + G  ++A+ +F +M+  +  +PN  T   VL   ++  A+  G  VH+ +  + 
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQ-LEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMV-IKS 222

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
            L  +  VGN+++NMY K   V  A  VF+ +  ++ +SW+++I+G   NG   +A +LF
Sbjct: 223 GLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELF 282

Query: 301 SLMIINAVFPDDVTFIALISACSH 324
             M +  V      F  +I  C++
Sbjct: 283 YRMRLEGVKLTQTIFATVIKLCAN 306



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 123/250 (49%), Gaps = 22/250 (8%)

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNE-ATLVNVLSACSSI 223
           LF + P++ +     ++  ++     KEA+++F  + ++    P + ++L  VL  C  +
Sbjct: 48  LFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRS--GSPTDGSSLSCVLKVCGCL 105

Query: 224 SALSFGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWST 282
                GK VH   I   +   VS  VG ++++MY+K   V    +VF+ +  K+ +SW++
Sbjct: 106 FDRIVGKQVHCQCIKCGFVEDVS--VGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTS 163

Query: 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG-----LILFKA 337
           +++G   NG   QAL+LFS M +  + P+  TF A++   +  G V++G     +++   
Sbjct: 164 LLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSG 223

Query: 338 MSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND- 396
           + +   +   M      V+MY ++ ++ +A+A    M      S W +++     +  D 
Sbjct: 224 LDSTIFVGNSM------VNMYSKSLMVSDAKAVFDSMENRNAVS-WNSMIAGFVTNGLDL 276

Query: 397 ---EMFDRIR 403
              E+F R+R
Sbjct: 277 EAFELFYRMR 286


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  277 bits (709), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 158/452 (34%), Positives = 254/452 (56%), Gaps = 51/452 (11%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---C 100
           ++    +++  Y  VKD+ +A + F+ +    VVSW  ++SG ++ G  +E + +F    
Sbjct: 193 NVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMV 252

Query: 101 GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD----NAILDFYIRC 156
              ++P+  T V+V+SACSS    +    + A  +R L++  I L+     A+LD Y +C
Sbjct: 253 NAGIEPDETTWVTVISACSS----RGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKC 308

Query: 157 GS--------------------------------LASCGYLFVKMPKRNVVSWTTMIGGY 184
           GS                                L S   LF  MP RNVV+W +MI GY
Sbjct: 309 GSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGY 368

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS-TRYDLS 243
           A+ G    A+ +F+EM   K+  P+E T+V+V+SAC  + AL  G +V  +++  +  LS
Sbjct: 369 AQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLS 428

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           +S    NA+I MY +CG +  A +VF  +A +D +S++T+ISG A +G G +A+ L S M
Sbjct: 429 ISG--HNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTM 486

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
               + PD VTFI +++ACSH GL+++G  +F+++       P + HYAC+VD+ GR G 
Sbjct: 487 KEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGE 541

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           LE+A+  +  MP+E    V+G+LLNA RIH+  E+ +     L   +  + G F L+SN 
Sbjct: 542 LEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNI 601

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
           +A A RW+D  +IR+ +++ G+KK TG SW+E
Sbjct: 602 YASAGRWKDVERIREAMKKGGVKKTTGWSWVE 633



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 108/383 (28%), Positives = 178/383 (46%), Gaps = 86/383 (22%)

Query: 33  HAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD----VVSWTTIISGLSK 88
           HAHV++ GH  D F++N+++  Y  +  I  A ++F+ +  PD    V  W  ++SG  K
Sbjct: 118 HAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEI--PDYERKVADWNAMVSGYWK 175

Query: 89  CGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148
                +A  +F   DV P                                 E N+I   A
Sbjct: 176 WESEGQAQWLF---DVMP---------------------------------ERNVITWTA 199

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
           ++  Y +   L +    F  MP+R+VVSW  M+ GYA+ G  +E + +F EM      EP
Sbjct: 200 MVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAG-IEP 258

Query: 209 NEATLVNVLSACSSIS----ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
           +E T V V+SACSS      A S  + +H     +  + ++  V  A+++MY KCG +G 
Sbjct: 259 DETTWVTVISACSSRGDPCLAASLVRTLH-----QKQIQLNCFVRTALLDMYAKCGSIGA 313

Query: 265 AIQVFNML-AYKDKISWSTVIS-------------------------------GLAMNGC 292
           A ++F+ L AY++ ++W+ +IS                               G A NG 
Sbjct: 314 ARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQ 373

Query: 293 GRQALQLFSLMII-NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY 351
              A++LF  MI    + PD+VT +++ISAC H G ++ G  + + + T  +I   +  +
Sbjct: 374 SAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFL-TENQIKLSISGH 432

Query: 352 ACVVDMYGRAGLLEEAEAFIREM 374
             ++ MY R G +E+A+   +EM
Sbjct: 433 NAMIFMYSRCGSMEDAKRVFQEM 455



 Score = 45.4 bits (106), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 18/151 (11%)

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLA-YKDKIS-WSTVISGLAMNGCGRQALQLFSLMI 304
            V NAVI+MY + G +G A +VF+ +  Y+ K++ W+ ++SG        QA  LF +M 
Sbjct: 131 FVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMP 190

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQ--HYACVVDMYGRAG 362
              V    +T+ A+++   +  + D      +A    ++ +P+     +  ++  Y + G
Sbjct: 191 ERNV----ITWTAMVTG--YAKVKD-----LEAARRYFDCMPERSVVSWNAMLSGYAQNG 239

Query: 363 LLEEAEAFIREM---PIEAEWSVWGALLNAC 390
           L EE      EM    IE + + W  +++AC
Sbjct: 240 LAEEVLRLFDEMVNAGIEPDETTWVTVISAC 270


>gi|212274935|ref|NP_001130299.1| uncharacterized protein LOC100191393 [Zea mays]
 gi|194688780|gb|ACF78474.1| unknown [Zea mays]
 gi|414586171|tpg|DAA36742.1| TPA: hypothetical protein ZEAMMB73_518704 [Zea mays]
          Length = 695

 Score =  277 bits (709), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 150/464 (32%), Positives = 254/464 (54%), Gaps = 12/464 (2%)

Query: 6   SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAH 65
           ++ N YT + +LKAC +       + IH   +  G+     + +SL+  Y     I  A 
Sbjct: 102 AAPNEYTLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDAR 161

Query: 66  QIFNSV-VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV-----KPNANTLVSVLSACS 119
           ++F+   +   + +W  ++SG +  G  ++A+ +F  +       +P+  T  S+L ACS
Sbjct: 162 RVFDGAGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACS 221

Query: 120 SLVSHKLGKAIHAHSLRN--LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
            L + + G  +HA    +     +N IL  A++D Y++C  L     +F ++ ++NV+ W
Sbjct: 222 GLGATREGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQW 281

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-I 236
           T ++ G+A+ G   EA+ +F+   ++  A P+   L +V+   +  + +  G+ VH Y I
Sbjct: 282 TAVVVGHAQEGQVTEALELFRRFWRSG-ARPDSHVLSSVVGVLADFALVEQGRQVHCYGI 340

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
                  VS   GN++++MY+KCG    A ++F  +   + +SW+T+++GL  +G GR+A
Sbjct: 341 KDPTGTDVS--AGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREA 398

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
           + LF  M    V PD+VT++AL+SACSH GLVD+    F  +     + P+ +HYAC+VD
Sbjct: 399 VALFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVD 458

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGT 416
           + GRAG L EA   IR MP+E    VW  LL+ACR+H++  +       L+   G +   
Sbjct: 459 LLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAMDGDNPVN 518

Query: 417 FALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +  +SN  A A  W + +K+RD +RR GLKK+ GCSW+EV   +
Sbjct: 519 YVTLSNVLAEAGEWRECHKVRDAMRRRGLKKQGGCSWVEVGKEV 562



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 181/375 (48%), Gaps = 10/375 (2%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           L+A + +   +  +++H  + + G   D  + N+L+  YV   ++  A ++F  +   +V
Sbjct: 11  LRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGGMRDRNV 70

Query: 77  VSWTTIISGLSKCGFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHA 132
           VSWT ++ G  + G     +    +M    +  PN  TL + L AC  +     G  IH 
Sbjct: 71  VSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAAGVGIHG 130

Query: 133 HSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIGGYAERGFCK 191
             +R   + + ++ ++++  Y + G +     +F        + +W  M+ GYA  G  +
Sbjct: 131 LCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHAGHGR 190

Query: 192 EAVSVFQEMEKTK-EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN-LVG 249
           +A+ VF+EM + + + +P+E T  ++L ACS + A   G  VH+ ++     + SN ++ 
Sbjct: 191 DALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTASNAILA 250

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
            A+++MYVKC  + +A+QVF  L  K+ I W+ V+ G A  G   +AL+LF     +   
Sbjct: 251 GALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRSGAR 310

Query: 310 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEA 369
           PD     +++   +   LV+QG  +             +     +VDMY + GL +EAE 
Sbjct: 311 PDSHVLSSVVGVLADFALVEQGRQVH-CYGIKDPTGTDVSAGNSIVDMYLKCGLPDEAER 369

Query: 370 FIREM--PIEAEWSV 382
             REM  P    W+ 
Sbjct: 370 MFREMRAPNVVSWTT 384



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 122/252 (48%), Gaps = 5/252 (1%)

Query: 111 LVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP 170
           +  +L A +   S + G  +H    +    ++ +L N ++D Y++CG L     +F  M 
Sbjct: 7   IAGLLRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGGMR 66

Query: 171 KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGK 230
            RNVVSWT ++ G+   G     + +  EM    EA PNE TL   L AC  +   + G 
Sbjct: 67  DRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAAGV 126

Query: 231 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI-SWSTVISGLAM 289
            +H  +  R      ++V ++++ +Y K G +G A +VF+       I +W+ ++SG A 
Sbjct: 127 GIHG-LCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAH 185

Query: 290 NGCGRQALQLFSLMIINAV--FPDDVTFIALISACSHGGLVDQGLILFKAMS-TVYEIVP 346
            G GR AL +F  M  +     PD+ TF +L+ ACS  G   +G  +  AM+ + +    
Sbjct: 186 AGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTAS 245

Query: 347 QMQHYACVVDMY 358
                  +VDMY
Sbjct: 246 NAILAGALVDMY 257


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  277 bits (709), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 150/456 (32%), Positives = 256/456 (56%), Gaps = 7/456 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YT+   L+ C+         +IH  VI+ G   ++++ + L+  Y    ++ +A  I 
Sbjct: 414 NQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGIL 473

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   DVVSWT +I+G ++     EA+ +F  ++   ++ +     S +SAC+ + +  
Sbjct: 474 QRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALN 533

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ IHA S  +    ++ + NA++  Y RCG        F K+  ++ +SW  +I G+A
Sbjct: 534 QGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFA 593

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSV 244
           + G C+EA+ VF +M +    E N  T  + +SA ++ + +  GK +H+  I T YD   
Sbjct: 594 QSGHCEEALQVFSQMNQAG-VEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSET 652

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
                N +I +Y KCG +  A + F  +  K+ +SW+ +I+G + +G G +A+ LF  M 
Sbjct: 653 E--ASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMK 710

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
              + P+ VTF+ ++SACSH GLV++GL  F++MS  + +VP+ +HY CVVD+ GRA LL
Sbjct: 711 QLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALL 770

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
             A  FI EMPIE +  +W  LL+AC +H+N E+ +   + L+  +     T+ L+SN +
Sbjct: 771 CCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMY 830

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           A + +W+  ++ R  ++  G+KK+ G SWIEV  SI
Sbjct: 831 AVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSI 866



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/389 (30%), Positives = 202/389 (51%), Gaps = 15/389 (3%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L AC+      K  ++H++VI+ G   D+ I+ SLL  YV   DI +AH+ F + 
Sbjct: 316 TVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTT 375

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGK 128
              +VV W  ++    + G   E+  +F  + ++   PN  T  S+L  C+SL +  LG+
Sbjct: 376 ETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGE 435

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IH   +++  + N+ + + ++D Y + G L +   +  ++ + +VVSWT MI GY +  
Sbjct: 436 QIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHD 495

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH--SYIST-RYDLSVS 245
              EA+ +FQEME  +    +     + +SAC+ I AL+ G+ +H  SYIS    DLS  
Sbjct: 496 LFAEALKLFQEME-NQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLS-- 552

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             +GNA++++Y +CG    A   F  +  KD ISW+ +ISG A +G   +ALQ+FS M  
Sbjct: 553 --IGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQ 610

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAM-STVYEIVPQMQHYACVVDMYGRAGLL 364
             V  +  TF + +SA ++   + QG  +   M  T Y+   + +    ++ +Y + G +
Sbjct: 611 AGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYD--SETEASNVLITLYSKCGSI 668

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIH 393
           E+A+    EMP E     W A++     H
Sbjct: 669 EDAKREFFEMP-EKNVVSWNAMITGYSQH 696



 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 112/424 (26%), Positives = 222/424 (52%), Gaps = 14/424 (3%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           Y F+  L AC+     +   ++H  ++++G   + F+ N+L+  Y    ++ +A QIF+ 
Sbjct: 214 YVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSK 273

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHKLG 127
           +   D +S+ ++ISGL++ GF   A+ +F  + +   KP+  T+ S+LSAC+S+ +   G
Sbjct: 274 MHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKG 333

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           K +H++ ++    +++I++ ++LD Y++C  + +    F+     NVV W  M+  Y + 
Sbjct: 334 KQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQL 393

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSN 246
           G   E+  +F +M+  +   PN+ T  ++L  C+S+ AL  G+ +H+  I + +  +V  
Sbjct: 394 GNLSESYWIFLQMQ-IEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNV-- 450

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            V + +I+MY K G++  A  +   L  +D +SW+ +I+G   +    +AL+LF  M   
Sbjct: 451 YVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQ 510

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
            +  D++ F + ISAC+    ++QG  +  A S +      +     +V +Y R G  + 
Sbjct: 511 GIRSDNIGFSSAISACAGIQALNQGQQI-HAQSYISGYSEDLSIGNALVSLYARCGRAQ- 568

Query: 367 AEAFIREMPIEAEWSV-WGALLNA-CRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
            +A++    I+A+ ++ W AL++   +    +E      Q  +N+ GV    F   S   
Sbjct: 569 -DAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQ--MNQAGVEANLFTFGSAVS 625

Query: 425 AGAD 428
           A A+
Sbjct: 626 ATAN 629



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 172/322 (53%), Gaps = 6/322 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T+    + C  +     A ++HA + + G   +  + + L+  Y+   ++ +A ++F
Sbjct: 9   NVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLF 68

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS-LVSH 124
           + +   +V  W  +ISGL       + + +F  +   +V P+ +T  SVL ACS      
Sbjct: 69  DDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPF 128

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           ++ + IHA  + +   ++ ++ N ++D Y + G +     +F ++  ++ VSW  MI G 
Sbjct: 129 QVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGL 188

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           ++ G   EA+ +F +M K+    P      +VLSAC+ I     G+ +H +I  ++ LS 
Sbjct: 189 SQNGREDEAILLFCQMHKSA-VIPTPYVFSSVLSACTKIELFKLGEQLHGFI-VKWGLSS 246

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
              V NA++ +Y + G++  A Q+F+ +  +D+IS++++ISGLA  G   +ALQLF  M 
Sbjct: 247 ETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQ 306

Query: 305 INAVFPDDVTFIALISACSHGG 326
           ++ + PD VT  +L+SAC+  G
Sbjct: 307 LDCMKPDCVTVASLLSACASVG 328



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 133/278 (47%), Gaps = 16/278 (5%)

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCG 163
           ++ N  T + +   C +  S    K +HA   ++  +   +L + ++D Y+  G + +  
Sbjct: 6   IRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAI 65

Query: 164 YLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI 223
            LF  +P  NV  W  +I G   +    + + +F  M  T+   P+E+T  +VL ACS  
Sbjct: 66  KLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLM-ITENVTPDESTFASVLRACSGG 124

Query: 224 SA-LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWST 282
            A     + +H+ I   +    S LV N +I++Y K G V +A  VF  L  KD +SW  
Sbjct: 125 KAPFQVTEQIHAKI-IHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVA 183

Query: 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 342
           +ISGL+ NG   +A+ LF  M  +AV P    F +++SAC+        + LFK    ++
Sbjct: 184 MISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTK-------IELFKLGEQLH 236

Query: 343 EIVPQM----QHYAC--VVDMYGRAGLLEEAEAFIREM 374
             + +     + + C  +V +Y R G L  AE    +M
Sbjct: 237 GFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKM 274


>gi|223948379|gb|ACN28273.1| unknown [Zea mays]
          Length = 648

 Score =  277 bits (709), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 150/464 (32%), Positives = 254/464 (54%), Gaps = 12/464 (2%)

Query: 6   SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAH 65
           ++ N YT + +LKAC +       + IH   +  G+     + +SL+  Y     I  A 
Sbjct: 55  AAPNEYTLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDAR 114

Query: 66  QIFNSV-VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV-----KPNANTLVSVLSACS 119
           ++F+   +   + +W  ++SG +  G  ++A+ +F  +       +P+  T  S+L ACS
Sbjct: 115 RVFDGAGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACS 174

Query: 120 SLVSHKLGKAIHAHSLRN--LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
            L + + G  +HA    +     +N IL  A++D Y++C  L     +F ++ ++NV+ W
Sbjct: 175 GLGATREGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQW 234

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-I 236
           T ++ G+A+ G   EA+ +F+   ++  A P+   L +V+   +  + +  G+ VH Y I
Sbjct: 235 TAVVVGHAQEGQVTEALELFRRFWRSG-ARPDSHVLSSVVGVLADFALVEQGRQVHCYGI 293

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
                  VS   GN++++MY+KCG    A ++F  +   + +SW+T+++GL  +G GR+A
Sbjct: 294 KDPTGTDVS--AGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREA 351

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
           + LF  M    V PD+VT++AL+SACSH GLVD+    F  +     + P+ +HYAC+VD
Sbjct: 352 VALFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVD 411

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGT 416
           + GRAG L EA   IR MP+E    VW  LL+ACR+H++  +       L+   G +   
Sbjct: 412 LLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAMDGDNPVN 471

Query: 417 FALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +  +SN  A A  W + +K+RD +RR GLKK+ GCSW+EV   +
Sbjct: 472 YVTLSNVLAEAGEWRECHKVRDAMRRRGLKKQGGCSWVEVGKEV 515



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 162/338 (47%), Gaps = 10/338 (2%)

Query: 54  FYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAI----DMFCGIDVKPNAN 109
            YV   ++  A ++F  +   +VVSWT ++ G  + G     +    +M    +  PN  
Sbjct: 1   MYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEY 60

Query: 110 TLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKM 169
           TL + L AC  +     G  IH   +R   + + ++ ++++  Y + G +     +F   
Sbjct: 61  TLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGA 120

Query: 170 P-KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK-EAEPNEATLVNVLSACSSISALS 227
                + +W  M+ GYA  G  ++A+ VF+EM + + + +P+E T  ++L ACS + A  
Sbjct: 121 GLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATR 180

Query: 228 FGKYVHSYISTRYDLSVSN-LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
            G  VH+ ++     + SN ++  A+++MYVKC  + +A+QVF  L  K+ I W+ V+ G
Sbjct: 181 EGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVG 240

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 346
            A  G   +AL+LF     +   PD     +++   +   LV+QG  +            
Sbjct: 241 HAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVH-CYGIKDPTGT 299

Query: 347 QMQHYACVVDMYGRAGLLEEAEAFIREM--PIEAEWSV 382
            +     +VDMY + GL +EAE   REM  P    W+ 
Sbjct: 300 DVSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTT 337


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  277 bits (708), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 145/463 (31%), Positives = 257/463 (55%), Gaps = 19/463 (4%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD----------- 60
           +   ALK+C+          +HA  +  G   D F  N+LL+ Y  +             
Sbjct: 60  SLPGALKSCAALGLRALGASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGS 119

Query: 61  ---IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSV 114
              + S  ++F+ +   DVVSW T++ G ++ G H EA+ +   +     KP++ TL SV
Sbjct: 120 AVVLESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSV 179

Query: 115 LSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV 174
           L   +     + G  +H  + RN   +++ + ++++D Y  C        +F  +P R+ 
Sbjct: 180 LPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDA 239

Query: 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
           + W +M+ G A+ G   EA+ +F+ M  +   +P   T  +++ AC ++++L  GK +H+
Sbjct: 240 ILWNSMLAGCAQNGSVDEALGLFRRMLHSG-IKPMPVTFSSLIPACGNLASLLLGKQLHA 298

Query: 235 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
           Y+  R     +  + +++I+MY KCG+V IA ++F+ +   D +SW+ +I G A++G  R
Sbjct: 299 YV-IRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAR 357

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
           +AL LF  M +  + P+ +TF+A+++ACSH GLVD+G   F +MS  Y IVP ++H+A +
Sbjct: 358 EALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAAL 417

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414
            D  GR G LEEA  FI  M I+   SVW  LL AC++H+N  + + + + + + +  S+
Sbjct: 418 ADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSM 477

Query: 415 GTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           G+  ++SNT++ + RW +   +R  +R+ G++K+  CSWIEV 
Sbjct: 478 GSHIILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVK 520



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 142/280 (50%), Gaps = 5/280 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +T +  L   +     ++ +E+H      G   D+F+ +SL+  Y        + ++F
Sbjct: 172 DSFTLSSVLPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVF 231

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           +++   D + W ++++G ++ G   EA+ +F  +    +KP   T  S++ AC +L S  
Sbjct: 232 DNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLL 291

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LGK +HA+ +R   + N+ + ++++D Y +CG+++    +F ++   ++VSWT MI G+A
Sbjct: 292 LGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHA 351

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G  +EA+ +F  ME     +PN  T + VL+ACS    +  G    + +S  Y +  S
Sbjct: 352 LHGPAREALVLFDRME-LGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPS 410

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS-WSTVI 284
                A+ +   + G +  A    + +  K   S WST++
Sbjct: 411 LEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLL 450



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 134/266 (50%), Gaps = 23/266 (8%)

Query: 78  SWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSA-------CSSLVSHKLGKAI 130
           SW   I   +  G    AI +F  +     A    SVL++       C++L    LG ++
Sbjct: 21  SWAHQIRVAASQGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASL 80

Query: 131 HAHSLRNLNENNIILDNAILDFYIRCGS--------------LASCGYLFVKMPKRNVVS 176
           HA +LR+    +    NA+L+ Y +  +              L S   +F +MP+++VVS
Sbjct: 81  HALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVS 140

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           W T++ G AE G   EA+ + +EM +    +P+  TL +VL   +  + +  G  +H + 
Sbjct: 141 WNTLVLGCAESGRHGEALGLVREMWRDG-CKPDSFTLSSVLPIFAEGADVRRGMELHGF- 198

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
           +TR        VG+++I+MY  C     +++VF+ L  +D I W+++++G A NG   +A
Sbjct: 199 ATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEA 258

Query: 297 LQLFSLMIINAVFPDDVTFIALISAC 322
           L LF  M+ + + P  VTF +LI AC
Sbjct: 259 LGLFRRMLHSGIKPMPVTFSSLIPAC 284


>gi|326491225|dbj|BAK05712.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 538

 Score =  277 bits (708), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 156/456 (34%), Positives = 255/456 (55%), Gaps = 22/456 (4%)

Query: 19  ACSLAHPHQKALEIHAHVIEYG-HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV---VFP 74
           A + + P + A  +HAH  + G + H   ++++L+  Y+       A  +F        P
Sbjct: 67  AATASAPCEAAPALHAHSAKLGLYRHHRGVRDALVALYLACGRRGVASDLFAGAGGGPAP 126

Query: 75  DVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHK----LGKAI 130
           DVVSWT +++  ++ G  +EA ++F  +             +A  +  +      L + +
Sbjct: 127 DVVSWTAMVTWHARLGLFREAAELFLAMADDGAVVVDAVAAAAAFAACAGAGELVLAREV 186

Query: 131 HAHSLRNLNENNIILD----NAILDFYIRCGSLASCGYLFVKM-PKRNVVSWTTMIGGYA 185
           H    R + E  + LD    NA++D Y +CG  A+    F  M P +N+V+W TMI  +A
Sbjct: 187 H----RRVLEAGVALDVVACNALVDMYAKCGDSAAALRCFRTMVPTKNLVTWNTMISAHA 242

Query: 186 ERGFCKEAVSVFQEMEK----TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
             G  +EA+ +F+EM +    T    P++AT V VL AC+ + AL  G++VH+YI     
Sbjct: 243 RAGELQEALELFREMLQQQGCTSSPLPDDATFVAVLGACARLGALDAGRWVHAYIVRTGR 302

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
            + + +VGNA+I+MY KCG V  A +VF+ +  +D  +++++ISGLAM+G G +AL LF 
Sbjct: 303 DAAAGVVGNALIDMYAKCGAVEQAAEVFDAMTRRDVYTYTSMISGLAMHGRGEEALALFG 362

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            M    V P++VTF+ ++SAC H G ++ GL  F AM+ ++ + P ++HY CVVDM GRA
Sbjct: 363 DMRQARVRPNEVTFLGVLSACCHAGNIEDGLRHFDAMAELHGVTPGIEHYGCVVDMLGRA 422

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           G L+EAE  +  MPI  +  +WG+LL ACR H + +  +R+ + +   +    G + LMS
Sbjct: 423 GRLDEAEELVSVMPIRPDAIIWGSLLAACRAHGHVDRAERVMRRMAEDED-DAGDYVLMS 481

Query: 422 NTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           N +A   R     ++R ++RR  + K  GCS IE++
Sbjct: 482 NMYAQEGRHGKAVQVRRQMRRGKVDKVPGCSLIEID 517


>gi|6016735|gb|AAF01561.1|AC009325_31 hypothetical protein [Arabidopsis thaliana]
          Length = 641

 Score =  277 bits (708), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 143/456 (31%), Positives = 250/456 (54%), Gaps = 5/456 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +  T    + AC+     +    +H  VI  G  +D+ + NSLL+ Y   +    A  +F
Sbjct: 143 DRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLF 202

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
             +   DV+SW+T+I+   + G   EA+ +F  +     +PN  T++ VL AC++    +
Sbjct: 203 KMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLE 262

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+  H  ++R   E  + +  A++D Y++C S      +F ++P+++VVSW  +I G+ 
Sbjct: 263 QGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFT 322

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G    ++  F  M       P+   +V VL +CS +  L   K  HSY+  +Y    +
Sbjct: 323 LNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYV-IKYGFDSN 381

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             +G +++ +Y +CG +G A +VFN +A KD + W+++I+G  ++G G +AL+ F+ M+ 
Sbjct: 382 PFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALETFNHMVK 441

Query: 306 NA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
           ++ V P++VTF++++SACSH GL+ +GL +FK M   Y + P ++HYA +VD+ GR G L
Sbjct: 442 SSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYRLAPNLEHYAVLVDLLGRVGDL 501

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           + A    + MP      + G LL ACRIH+N EM + + + L   +    G + LMSN +
Sbjct: 502 DTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKKLFELESNHAGYYMLMSNVY 561

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
                WE+  K+R+ +++ G+KK    S IE+   +
Sbjct: 562 GVKGEWENVEKLRNSVKQRGIKKGLAESLIEIRRKV 597



 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 114/391 (29%), Positives = 208/391 (53%), Gaps = 10/391 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHL-HDIFIQNSLLHFYVTVKDIFSAHQI 67
           +++T   ALKAC           IH  V +   L  D+++ +SL++ Y+    +  A ++
Sbjct: 40  DNFTLPVALKACGELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRM 99

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVS 123
           F+ +  PD+V+W++++SG  K G   +A++ F  +    DV P+  TL++++SAC+ L +
Sbjct: 100 FDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSN 159

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            +LG+ +H   +R    N++ L N++L+ Y +  +      LF  + +++V+SW+T+I  
Sbjct: 160 SRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIAC 219

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           Y + G   EA+ VF +M      EPN AT++ VL AC++   L  G+  H  ++ R  L 
Sbjct: 220 YVQNGAAAEALLVFNDM-MDDGTEPNVATVLCVLQACAAAHDLEQGRKTHE-LAIRKGLE 277

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
               V  A+++MY+KC     A  VF+ +  KD +SW  +ISG  +NG   ++++ FS+M
Sbjct: 278 TEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIM 337

Query: 304 II-NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
           ++ N   PD +  + ++ +CS  G ++Q    F +    Y         A +V++Y R G
Sbjct: 338 LLENNTRPDAILMVKVLGSCSELGFLEQAKC-FHSYVIKYGFDSNPFIGASLVELYSRCG 396

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
            L  A      + ++ +  VW +L+    IH
Sbjct: 397 SLGNASKVFNGIALK-DTVVWTSLITGYGIH 426



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 173/338 (51%), Gaps = 27/338 (7%)

Query: 78  SWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHS 134
            W T++  LS+    +E +  F  +   + KP+  TL   L AC  L     G+ IH   
Sbjct: 8   QWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYGEMIHGFV 67

Query: 135 LRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
            +++   +++ + ++++  YI+CG +     +F ++ K ++V+W++M+ G+ + G   +A
Sbjct: 68  KKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQA 127

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR---YDLSVSNLVGN 250
           V  F+ M    +  P+  TL+ ++SAC+ +S    G+ VH ++  R    DLS+     N
Sbjct: 128 VEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLV----N 183

Query: 251 AVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP 310
           +++N Y K      A+ +F M+A KD ISWSTVI+    NG   +AL +F+ M+ +   P
Sbjct: 184 SLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEP 243

Query: 311 DDVTFIALISACSHGGLVDQG-----LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
           +  T + ++ AC+    ++QG     L + K + T      +++    +VDMY +    E
Sbjct: 244 NVATVLCVLQACAAAHDLEQGRKTHELAIRKGLET------EVKVSTALVDMYMKCFSPE 297

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRI----HRNDEMF 399
           EA A    +P +   S W AL++   +    HR+ E F
Sbjct: 298 EAYAVFSRIPRKDVVS-WVALISGFTLNGMAHRSIEEF 334



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 90/156 (57%), Gaps = 2/156 (1%)

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           M KR++  W T++   +     +E +  F  M + +E +P+  TL   L AC  +  +++
Sbjct: 1   MTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEE-KPDNFTLPVALKACGELREVNY 59

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
           G+ +H ++     L     VG+++I MY+KCG +  A+++F+ L   D ++WS+++SG  
Sbjct: 60  GEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFE 119

Query: 289 MNGCGRQALQLFSLMIINA-VFPDDVTFIALISACS 323
            NG   QA++ F  M++ + V PD VT I L+SAC+
Sbjct: 120 KNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACT 155


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  277 bits (708), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 136/402 (33%), Positives = 234/402 (58%), Gaps = 5/402 (1%)

Query: 63  SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDM---FCGIDVKPNANTLVSVLSACS 119
           S  +IF  +   D+VSW TII+G ++ G + E + M     G ++KP++ TL SVL   +
Sbjct: 252 SVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIA 311

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
             V    GK IH  S+R   +  + + ++++D Y +C  +     +F  + +R+ +SW +
Sbjct: 312 ENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNS 371

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           +I G  + G   E +  F++M   K  +P   +  +++ AC+ ++ L  GK +H YI TR
Sbjct: 372 IIAGCVQNGLFDEGLKFFRQMLMAK-IKPKSYSFSSIMPACAHLTTLHLGKQLHGYI-TR 429

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
                +  + +++++MY KCG++  A Q+F+ +  +D +SW+ +I G A++G    A++L
Sbjct: 430 NGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIEL 489

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
           F  M    + P+ V F+A+++ACSH GLVD+    F +M+  + I P ++HYA V D+ G
Sbjct: 490 FEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLG 549

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFAL 419
           RAG LEEA  FI  MPI    SVW  LL+ACR+H+N +M +++   ++     + G + L
Sbjct: 550 RAGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAYIL 609

Query: 420 MSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           ++N ++ A RW++  K R  +RR G++K   CSWIEV   ++
Sbjct: 610 LANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVY 651



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 111/197 (56%), Gaps = 4/197 (2%)

Query: 28  KALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS 87
           K  EIH   I  G   ++++ +SL+  Y     +  ++++F  +   D +SW +II+G  
Sbjct: 318 KGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCV 377

Query: 88  KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
           + G   E +  F  +    +KP + +  S++ AC+ L +  LGK +H +  RN  + NI 
Sbjct: 378 QNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIF 437

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           + ++++D Y +CG++ +   +F +M  R++VSWT MI G A  G   +A+ +F++M KT+
Sbjct: 438 IASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQM-KTE 496

Query: 205 EAEPNEATLVNVLSACS 221
             EPN    + VL+ACS
Sbjct: 497 GIEPNYVAFMAVLTACS 513



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 104/432 (24%), Positives = 191/432 (44%), Gaps = 61/432 (14%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML+     +H  F   LKAC++         +H ++I  G   D++  N+L++ Y  ++ 
Sbjct: 99  MLASGLYPDHNVFPSVLKACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRF 158

Query: 61  I-------FSAHQIFNSVV--FPDVVSWTTIISGLSKCGFHKEAI--DMFCG-------- 101
           +         A Q+ + +      V + + ++    +     EA   D+ C         
Sbjct: 159 LKKSGRQRLGASQVLDEMTERTRSVRTASVLVGNQGRKVSDIEAFNYDVSCRSREFEAQV 218

Query: 102 --IDVKPNANTLVSVLSACSSLVSHKLGKAIH--AHSLRNLNENNIILDNAILDFYIRCG 157
             ID KP +      + AC+      LG+ I   +HS+                      
Sbjct: 219 LEIDYKPRSE--YREMEACN------LGQQIKDISHSM---------------------- 248

Query: 158 SLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVL 217
           S+ S   +F  MP++++VSW T+I G A  G   E +++ +EM      +P+  TL +VL
Sbjct: 249 SVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGAN-LKPDSFTLSSVL 307

Query: 218 SACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK 277
              +    +S GK +H   S R  L     V +++I+MY KC  V  + +VF +L  +D 
Sbjct: 308 PLIAENVDISKGKEIHG-CSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDG 366

Query: 278 ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKA 337
           ISW+++I+G   NG   + L+ F  M++  + P   +F +++ AC+H   +  G  L   
Sbjct: 367 ISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGY 426

Query: 338 MSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND- 396
           + T       +   + +VDMY + G +  A      M +    S W A++  C +H +  
Sbjct: 427 I-TRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVS-WTAMIMGCALHGHAL 484

Query: 397 ---EMFDRIRQD 405
              E+F++++ +
Sbjct: 485 DAIELFEQMKTE 496



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 164/384 (42%), Gaps = 48/384 (12%)

Query: 12  TFTQALKACSLAHP-----HQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           T T+AL    L +P       +A ++HA V+++     +   + LL  Y  +  +  + +
Sbjct: 5   TSTEALVNSLLRNPLSIKSRSQAQQLHAQVLKF-QASSLCNLSLLLSIYSHINLLHDSLR 63

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVS 123
           +FN++ FP  ++W ++I   +  G   +++  F G+    + P+ N   SVL AC+ L+ 
Sbjct: 64  LFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMD 123

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
             LG+++H + +R   + ++   NA+++ Y +          F+K   R  +  + ++  
Sbjct: 124 LNLGESLHGYIIRVGLDFDLYTGNALMNMYSK--------LRFLKKSGRQRLGASQVLDE 175

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYV----HSYISTR 239
             ER       SV    +  K ++      +   +   S  +  F   V    +   S  
Sbjct: 176 MTERTRSVRTASVLVGNQGRKVSD------IEAFNYDVSCRSREFEAQVLEIDYKPRSEY 229

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
            ++   NL G  + ++      V    ++F M+  KD +SW+T+I+G A NG   + L +
Sbjct: 230 REMEACNL-GQQIKDI-SHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTM 287

Query: 300 FSLMIINAVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYEIVPQM 348
              M    + PD  T  +++   +           HG  + QGL      + VY     +
Sbjct: 288 VREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLD-----AEVYVASSLI 342

Query: 349 QHYA-C--VVDMYGRAGLLEEAEA 369
             YA C  VVD Y    LL E + 
Sbjct: 343 DMYAKCTRVVDSYRVFTLLTERDG 366



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 3/112 (2%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           Y+F+  + AC+         ++H ++   G   +IFI +SL+  Y    +I +A QIF+ 
Sbjct: 402 YSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDR 461

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACS 119
           +   D+VSWT +I G +  G   +AI++F  +    ++PN    ++VL+ACS
Sbjct: 462 MRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACS 513


>gi|334185017|ref|NP_186807.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546765|sp|Q9SS97.2|PP205_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g01580
 gi|332640170|gb|AEE73691.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 143/456 (31%), Positives = 250/456 (54%), Gaps = 5/456 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +  T    + AC+     +    +H  VI  G  +D+ + NSLL+ Y   +    A  +F
Sbjct: 162 DRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLF 221

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
             +   DV+SW+T+I+   + G   EA+ +F  +     +PN  T++ VL AC++    +
Sbjct: 222 KMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLE 281

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+  H  ++R   E  + +  A++D Y++C S      +F ++P+++VVSW  +I G+ 
Sbjct: 282 QGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFT 341

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G    ++  F  M       P+   +V VL +CS +  L   K  HSY+  +Y    +
Sbjct: 342 LNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYV-IKYGFDSN 400

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             +G +++ +Y +CG +G A +VFN +A KD + W+++I+G  ++G G +AL+ F+ M+ 
Sbjct: 401 PFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALETFNHMVK 460

Query: 306 NA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
           ++ V P++VTF++++SACSH GL+ +GL +FK M   Y + P ++HYA +VD+ GR G L
Sbjct: 461 SSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYRLAPNLEHYAVLVDLLGRVGDL 520

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           + A    + MP      + G LL ACRIH+N EM + + + L   +    G + LMSN +
Sbjct: 521 DTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKKLFELESNHAGYYMLMSNVY 580

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
                WE+  K+R+ +++ G+KK    S IE+   +
Sbjct: 581 GVKGEWENVEKLRNSVKQRGIKKGLAESLIEIRRKV 616



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 114/391 (29%), Positives = 208/391 (53%), Gaps = 10/391 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHL-HDIFIQNSLLHFYVTVKDIFSAHQI 67
           +++T   ALKAC           IH  V +   L  D+++ +SL++ Y+    +  A ++
Sbjct: 59  DNFTLPVALKACGELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRM 118

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVS 123
           F+ +  PD+V+W++++SG  K G   +A++ F  +    DV P+  TL++++SAC+ L +
Sbjct: 119 FDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSN 178

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            +LG+ +H   +R    N++ L N++L+ Y +  +      LF  + +++V+SW+T+I  
Sbjct: 179 SRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIAC 238

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           Y + G   EA+ VF +M      EPN AT++ VL AC++   L  G+  H  ++ R  L 
Sbjct: 239 YVQNGAAAEALLVFNDM-MDDGTEPNVATVLCVLQACAAAHDLEQGRKTHE-LAIRKGLE 296

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
               V  A+++MY+KC     A  VF+ +  KD +SW  +ISG  +NG   ++++ FS+M
Sbjct: 297 TEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIM 356

Query: 304 II-NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
           ++ N   PD +  + ++ +CS  G ++Q    F +    Y         A +V++Y R G
Sbjct: 357 LLENNTRPDAILMVKVLGSCSELGFLEQAKC-FHSYVIKYGFDSNPFIGASLVELYSRCG 415

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
            L  A      + ++ +  VW +L+    IH
Sbjct: 416 SLGNASKVFNGIALK-DTVVWTSLITGYGIH 445



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 179/352 (50%), Gaps = 27/352 (7%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 120
           A Q+F  +    +  W T++  LS+    +E +  F  +   + KP+  TL   L AC  
Sbjct: 13  ARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGE 72

Query: 121 LVSHKLGKAIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
           L     G+ IH    +++   +++ + ++++  YI+CG +     +F ++ K ++V+W++
Sbjct: 73  LREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSS 132

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           M+ G+ + G   +AV  F+ M    +  P+  TL+ ++SAC+ +S    G+ VH ++  R
Sbjct: 133 MVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRR 192

Query: 240 ---YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
               DLS+     N+++N Y K      A+ +F M+A KD ISWSTVI+    NG   +A
Sbjct: 193 GFSNDLSLV----NSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEA 248

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG-----LILFKAMSTVYEIVPQMQHY 351
           L +F+ M+ +   P+  T + ++ AC+    ++QG     L + K + T      +++  
Sbjct: 249 LLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLET------EVKVS 302

Query: 352 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI----HRNDEMF 399
             +VDMY +    EEA A    +P +   S W AL++   +    HR+ E F
Sbjct: 303 TALVDMYMKCFSPEEAYAVFSRIPRKDVVS-WVALISGFTLNGMAHRSIEEF 353


>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 491

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 156/457 (34%), Positives = 256/457 (56%), Gaps = 18/457 (3%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S+ +    +AL A  +A        +H+HV++ G + D F+ N+L+  Y        A +
Sbjct: 6   SFTYSFLIKALSAAGVA----PVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARK 61

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLV--SVLSACSSLVSH 124
           +F+ +   DVVSW T ++ + + G       +F   D  P  +T+   ++L   +     
Sbjct: 62  VFDEMPERDVVSWNTAMAAMVREGELAGVRKLF---DEMPEKDTVSWNTILDGYT----- 113

Query: 125 KLGKAIHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
           K G+   A  L + + E N++  + ++  Y + G L     +F KMP +N+V+WT M+  
Sbjct: 114 KAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSA 173

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
            A++G   EA  +F +M K    E + A +V++L+AC+   +LS GK +H Y+  R +L 
Sbjct: 174 CAQKGLVDEAGKLFAQM-KEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKR-NLG 231

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNM-LAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
            S  V NA+I+M+ KCG V  A  VF+     KD +SW+++I G AM+G G +AL+LF+ 
Sbjct: 232 RSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQ 291

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
           M      PD VT I ++SAC+H G VD+G   F  M   Y I+PQ++HY C++D+ GR G
Sbjct: 292 MKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGG 351

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSN 422
           L++EA   I+ MP E    +WG+LL+ACR+H+N E  +    +L   +  + G +A++SN
Sbjct: 352 LIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSN 411

Query: 423 TFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPS 459
            +A A +W D  K R +++  G +K  G SW+E+N +
Sbjct: 412 IYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVELNET 448


>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 684

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 160/459 (34%), Positives = 253/459 (55%), Gaps = 7/459 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+   +  N  T +  L         +   EIH   +  G   DIFI NSL+  Y     
Sbjct: 204 MIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGH 263

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSA 117
              A  IF+++   ++VSW  +I+  +      EAI     +      PNA T  +VL A
Sbjct: 264 STEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPA 323

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C+ L     GK IHA  +R    +++ + N+++D Y +CG L S   +F    +++ VS+
Sbjct: 324 CARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVF-NTSRKDEVSY 382

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
             +I GY+E   C +++++F EM +    +P+  + V V+SAC++++AL  GK VH  ++
Sbjct: 383 NILIIGYSETDDCLQSLNLFSEM-RLLGKKPDVVSFVGVISACANLAALKQGKEVHG-VA 440

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            R  L     V N++++ Y KCG + IA ++FN + +KD  SW+T+I G  M G    A+
Sbjct: 441 LRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAI 500

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
            +F  M  + V  D V++IA++SACSHGGLV++G   F  M     + P   HY C+VD+
Sbjct: 501 SMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEM-LAQRLEPTEMHYTCMVDL 559

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTF 417
            GRAG +EEA   I+++PI  + ++WGALL ACRI+ N E+  R  + L   K    G +
Sbjct: 560 LGRAGFVEEAAKLIQQLPIAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHCGYY 619

Query: 418 ALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
            L+SN +A   RW++ NKIR+ ++  G KK  GCSW+++
Sbjct: 620 ILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQI 658



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/304 (33%), Positives = 159/304 (52%), Gaps = 6/304 (1%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS--- 87
            IH + ++ G    +   N+L+  Y     + +  Q+FN  V  + VSW +II+GL+   
Sbjct: 133 RIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKG 192

Query: 88  KCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
           +C     A  M      +PN+ T+ S+L     L   K GK IH  S+R   E +I + N
Sbjct: 193 RCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIAN 252

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           +++D Y + G       +F  + +RN+VSW  MI  YA      EA+    +M++T E  
Sbjct: 253 SLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGEC- 311

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
           PN  T  NVL AC+ +  L  GK +H+ +  R  L+    V N++I+MY KCG +  A  
Sbjct: 312 PNAVTFTNVLPACARLGFLGPGKEIHA-MGVRIGLTSDLFVSNSLIDMYAKCGCLHSARN 370

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           VFN  + KD++S++ +I G +      Q+L LFS M +    PD V+F+ +ISAC++   
Sbjct: 371 VFNT-SRKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAA 429

Query: 328 VDQG 331
           + QG
Sbjct: 430 LKQG 433



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 186/364 (51%), Gaps = 7/364 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +TF   LK CS +    K +E+H  V + G   D+++ N+LL  Y     +  A ++F
Sbjct: 9   DDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLF 68

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAID----MFCGIDVKPNANTLVSVLSACSSLVSH 124
           + +   DVVSW TII  LS  G + EA +    M     +KPN  +++S+L   ++L   
Sbjct: 69  DEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDE 128

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           ++ + IH +S++   ++ +   NA++D Y +CGS+ +   +F +  ++N VSW ++I G 
Sbjct: 129 EMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGL 188

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           A +G C +A++ F+ M     A+PN  T+ ++L     +     GK +H + S R     
Sbjct: 189 ACKGRCWDALNAFRMMIDAG-AQPNSVTISSILPVLVELECFKAGKEIHGF-SMRMGTET 246

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
              + N++I+MY K G    A  +F+ L  ++ +SW+ +I+  A+N    +A++    M 
Sbjct: 247 DIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQ 306

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
                P+ VTF  ++ AC+  G +  G  +  AM     +   +     ++DMY + G L
Sbjct: 307 ETGECPNAVTFTNVLPACARLGFLGPGKEI-HAMGVRIGLTSDLFVSNSLIDMYAKCGCL 365

Query: 365 EEAE 368
             A 
Sbjct: 366 HSAR 369



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 129/270 (47%), Gaps = 14/270 (5%)

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCG 163
           V+ + +T   VL  CS       G  +H    +   + ++ + N +L  Y  CG L    
Sbjct: 6   VQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDAR 65

Query: 164 YLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI 223
            LF +MP+R+VVSW T+IG  +  G   EA + +  M      +PN  +++++L   +++
Sbjct: 66  RLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAAL 125

Query: 224 SALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTV 283
                 + +H Y S +  L       NA+++ Y KCG V    QVFN    K+++SW+++
Sbjct: 126 EDEEMTRRIHCY-SVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSI 184

Query: 284 ISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 343
           I+GLA  G    AL  F +MI     P+ VT  +++       LV+  L  FKA   ++ 
Sbjct: 185 INGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPV-----LVE--LECFKAGKEIHG 237

Query: 344 IVPQMQHYA------CVVDMYGRAGLLEEA 367
              +M           ++DMY ++G   EA
Sbjct: 238 FSMRMGTETDIFIANSLIDMYAKSGHSTEA 267


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 153/451 (33%), Positives = 258/451 (57%), Gaps = 7/451 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N++T + ALK+C           +H   ++  + HD+F+  +LL  Y    +I  A ++F
Sbjct: 236 NNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLF 295

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
             +   D++ W+ +I+  ++    KEA+D+F  +    V PN  T  SVL AC+S VS  
Sbjct: 296 EEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLD 355

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LGK IH+  L+    +N+ + NAI+D Y +CG + +   LF ++P RN V+W T+I GY 
Sbjct: 356 LGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYV 415

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSV 244
           + G  + A+++F  M +  + +P E T  +VL A +S++AL  G  +HS  I T Y+   
Sbjct: 416 QLGDGERAMNLFTHMLE-HDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYN--K 472

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
             +V N++I+MY KCG +  A   F+ +  +D++SW+ +I G +M+G   +AL LF +M 
Sbjct: 473 DTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQ 532

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
                P+ +TF+ ++SACS+ GL+ +G   F++MS  Y+I P ++HY C+V + GR G  
Sbjct: 533 HTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRF 592

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           +EA   I E+  +    VW ALL AC IH+  ++     Q ++  +     T  L+SN +
Sbjct: 593 DEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMY 652

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
           A A RW++   +R  +++  ++K+ G SW+E
Sbjct: 653 ATAGRWDNVAFVRKYMQKKKVRKEPGLSWVE 683



 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 123/448 (27%), Positives = 231/448 (51%), Gaps = 29/448 (6%)

Query: 9   NHYTFTQALK---ACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAH 65
           N + FT  LK   +  LAH       +HA V + GH  D F+  +L+  Y    ++  A 
Sbjct: 135 NPFVFTTLLKLLVSMDLAHL---CWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVAR 191

Query: 66  QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLV 122
            +F+ +   D+VSWT +++  ++  F++E++ +F  + +   KPN  T+   L +C  L 
Sbjct: 192 HVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLE 251

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
           +  +GK++H  +L+   ++++ +  A+L+ Y + G +     LF +MPK +++ W+ MI 
Sbjct: 252 AFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIA 311

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
            YA+    KEA+ +F  M +T    PN  T  +VL AC+S  +L  GK +HS +  ++ L
Sbjct: 312 RYAQSDRSKEALDLFLRMRQT-SVVPNNFTFASVLQACASSVSLDLGKQIHSCV-LKFGL 369

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
           + +  V NA++++Y KCG++  ++++F  L  ++ ++W+T+I G    G G +A+ LF+ 
Sbjct: 370 NSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTH 429

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGL----ILFKAMSTVYEIVPQMQHYACVVDMY 358
           M+ + + P +VT+ +++ A +    ++ GL    +  K M     +V        ++DMY
Sbjct: 430 MLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVAN-----SLIDMY 484

Query: 359 GRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQ-DLVNKKGVS 413
            + G + +A     +M    E S W A++    +H        +FD ++  D    K   
Sbjct: 485 AKCGRINDARLTFDKMNKRDEVS-WNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTF 543

Query: 414 VGTFALMSNT---FAGADRWEDTNKIRD 438
           VG  +  SN    + G   +E  +K  D
Sbjct: 544 VGVLSACSNAGLLYKGQAHFESMSKDYD 571



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 186/389 (47%), Gaps = 34/389 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALE----------IHAHVIEYGHLHDIFIQNSLLHFYVTV 58
           +H     AL + S AH  Q+ +           +H H+++ G   D+F QN LL+FYV  
Sbjct: 24  HHQQCLSALDSHSYAHMLQQIIRNGADPIAGKHLHCHILKRGTSLDLFAQNILLNFYVQS 83

Query: 59  KDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNANTLVS 113
             +  A ++F+ +   + +S+ T+  G S+     +A+         G +V P   T  +
Sbjct: 84  NSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVFT--T 141

Query: 114 VLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
           +L    S+    L   +HA   +  +  +  +  A++D Y   G++    ++F  +  ++
Sbjct: 142 LLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKD 201

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
           +VSWT M+  YAE  F +E++ +F +M +    +PN  T+   L +C  + A + GK VH
Sbjct: 202 MVSWTGMVACYAENCFYEESLQLFNQM-RIMGYKPNNFTISGALKSCLGLEAFNVGKSVH 260

Query: 234 S-YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
              +   YD  +   VG A++ +Y K G++  A ++F  +   D I WS +I+  A +  
Sbjct: 261 GCALKGCYDHDL--FVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDR 318

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG------LILFKAMSTVYEIVP 346
            ++AL LF  M   +V P++ TF +++ AC+    +D G      ++ F   S V+    
Sbjct: 319 SKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFV--- 375

Query: 347 QMQHYACVVDMYGRAGLLEEAEAFIREMP 375
                  ++D+Y + G +E +     E+P
Sbjct: 376 ----SNAIMDVYAKCGEIENSMKLFEELP 400



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 133/292 (45%), Gaps = 28/292 (9%)

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           GK +H H L+     ++   N +L+FY++  SL     LF +MP+ N +S+ T+  GY+ 
Sbjct: 54  GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSR 113

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS--V 244
                +A+     + K    E N      +L    S+        +H+ +   Y L    
Sbjct: 114 DHQFHQALHFILRIFKEGH-EVNPFVFTTLLKLLVSMDLAHLCWTLHACV---YKLGHHA 169

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
              VG A+I+ Y   G+V +A  VF+ +  KD +SW+ +++  A N    ++LQLF+ M 
Sbjct: 170 DAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMR 229

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ--MQHYACV----VDMY 358
           I    P++ T    + +C        GL  F    +V+    +    H   V    +++Y
Sbjct: 230 IMGYKPNNFTISGALKSC-------LGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELY 282

Query: 359 GRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND------EMFDRIRQ 404
            ++G + +A+    EMP + +   W  ++   R  ++D      ++F R+RQ
Sbjct: 283 AKSGEIIDAQRLFEEMP-KTDLIPWSLMI--ARYAQSDRSKEALDLFLRMRQ 331


>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
          Length = 768

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 163/486 (33%), Positives = 253/486 (52%), Gaps = 42/486 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHL--HDIFIQNSLLHFYVTVKDIFSAHQ 66
           N  TF   L+ C      +K  +IH   +  G L      +   LL+ Y  +     A +
Sbjct: 253 NTQTFYFLLQKCG---SLEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQK 309

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVS 123
           +FN +  PD+VSWT +IS         +A  +F  +    ++P++  +V  +SAC     
Sbjct: 310 VFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKD 369

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFY------------------------------ 153
              G+ +H    R    ++ I+ NA++D Y                              
Sbjct: 370 LSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNG 429

Query: 154 -IRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEAT 212
            I+C  + +   +F +MP RN VSWT MI GY +       + +FQEM    +  P   T
Sbjct: 430 FIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVIT 489

Query: 213 LVNVLSACSSISALSFGKYVHSYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 271
           +V VLS C+ I A   G  VH Y++ T  DL V+  V NA+++MY K G + +A+++F  
Sbjct: 490 IVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVT--VNNALMDMYAKSGALVLALKIFQE 547

Query: 272 LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
           +  +D  SW+T+ISGLA++G G  AL+ FS M  +   P++VT ++++SACSH GLV +G
Sbjct: 548 MPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNEVTLLSVLSACSHAGLVVEG 607

Query: 332 LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACR 391
             LF+ M   + I P++QHY C+VD+ GRAGLL EA+  I  MPI+ +  +W +LL+AC 
Sbjct: 608 RSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACL 667

Query: 392 IHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGC 451
           +H N  + +   + ++  +    G + L+ N +  A RWED  K R  +R   +KKK GC
Sbjct: 668 VHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVKKKPGC 727

Query: 452 SWIEVN 457
           SW+EVN
Sbjct: 728 SWVEVN 733



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 93/211 (44%), Gaps = 6/211 (2%)

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL-SVSNLVGNAVINMYVKCGDV 262
           + A  N  T   +L  C S+  L   K +H    T   L S    +   ++N Y + G  
Sbjct: 248 RNAHMNTQTFYFLLQKCGSLEKL---KQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSP 304

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
             A +VFN +   D +SW+ +IS         +A  +FS +  + + PD    +  +SAC
Sbjct: 305 VDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSAC 364

Query: 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
            H   +  G I+   M   +E+         ++DMY R+G +E A +  + M I+ + S 
Sbjct: 365 GHRKDLSNGRIVH-GMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIK-DVSS 422

Query: 383 WGALLNACRIHRNDEMFDRIRQDLVNKKGVS 413
           W +LLN      + E   RI  ++  +  VS
Sbjct: 423 WTSLLNGFIKCNDIEAARRIFDEMPMRNSVS 453


>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 833

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 160/459 (34%), Positives = 253/459 (55%), Gaps = 7/459 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+   +  N  T +  L         +   EIH   +  G   DIFI NSL+  Y     
Sbjct: 353 MIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGH 412

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSA 117
              A  IF+++   ++VSW  +I+  +      EAI     +      PNA T  +VL A
Sbjct: 413 STEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPA 472

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C+ L     GK IHA  +R    +++ + N+++D Y +CG L S   +F    +++ VS+
Sbjct: 473 CARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVF-NTSRKDEVSY 531

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
             +I GY+E   C +++++F EM +    +P+  + V V+SAC++++AL  GK VH  ++
Sbjct: 532 NILIIGYSETDDCLQSLNLFSEM-RLLGKKPDVVSFVGVISACANLAALKQGKEVHG-VA 589

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            R  L     V N++++ Y KCG + IA ++FN + +KD  SW+T+I G  M G    A+
Sbjct: 590 LRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAI 649

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
            +F  M  + V  D V++IA++SACSHGGLV++G   F  M     + P   HY C+VD+
Sbjct: 650 SMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEM-LAQRLEPTEMHYTCMVDL 708

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTF 417
            GRAG +EEA   I+++PI  + ++WGALL ACRI+ N E+  R  + L   K    G +
Sbjct: 709 LGRAGFVEEAAKLIQQLPIAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHCGYY 768

Query: 418 ALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
            L+SN +A   RW++ NKIR+ ++  G KK  GCSW+++
Sbjct: 769 ILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQI 807



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 101/304 (33%), Positives = 159/304 (52%), Gaps = 6/304 (1%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS--- 87
            IH + ++ G    +   N+L+  Y     + +  Q+FN  V  + VSW +II+GL+   
Sbjct: 282 RIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKG 341

Query: 88  KCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
           +C     A  M      +PN+ T+ S+L     L   K GK IH  S+R   E +I + N
Sbjct: 342 RCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIAN 401

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           +++D Y + G       +F  + +RN+VSW  MI  YA      EA+    +M++T E  
Sbjct: 402 SLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGEC- 460

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
           PN  T  NVL AC+ +  L  GK +H+ +  R  L+    V N++I+MY KCG +  A  
Sbjct: 461 PNAVTFTNVLPACARLGFLGPGKEIHA-MGVRIGLTSDLFVSNSLIDMYAKCGCLHSARN 519

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           VFN  + KD++S++ +I G +      Q+L LFS M +    PD V+F+ +ISAC++   
Sbjct: 520 VFNT-SRKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAA 578

Query: 328 VDQG 331
           + QG
Sbjct: 579 LKQG 582



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 186/364 (51%), Gaps = 7/364 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +TF   LK CS +    K +E+H  V + G   D+++ N+LL  Y     +  A ++F
Sbjct: 158 DDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLF 217

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAID----MFCGIDVKPNANTLVSVLSACSSLVSH 124
           + +   DVVSW TII  LS  G + EA +    M     +KPN  +++S+L   ++L   
Sbjct: 218 DEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDE 277

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           ++ + IH +S++   ++ +   NA++D Y +CGS+ +   +F +  ++N VSW ++I G 
Sbjct: 278 EMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGL 337

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           A +G C +A++ F+ M     A+PN  T+ ++L     +     GK +H + S R     
Sbjct: 338 ACKGRCWDALNAFRMMIDAG-AQPNSVTISSILPVLVELECFKAGKEIHGF-SMRMGTET 395

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
              + N++I+MY K G    A  +F+ L  ++ +SW+ +I+  A+N    +A++    M 
Sbjct: 396 DIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQ 455

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
                P+ VTF  ++ AC+  G +  G  +  AM     +   +     ++DMY + G L
Sbjct: 456 ETGECPNAVTFTNVLPACARLGFLGPGKEI-HAMGVRIGLTSDLFVSNSLIDMYAKCGCL 514

Query: 365 EEAE 368
             A 
Sbjct: 515 HSAR 518



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 142/314 (45%), Gaps = 21/314 (6%)

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKL 126
           ++N+++    ++W     G        E  +      V+ + +T   VL  CS       
Sbjct: 125 LWNTLIRAHSIAWNGTFDGF-------ETYNRMVRRGVQLDDHTFPFVLKLCSDSFDICK 177

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           G  +H    +   + ++ + N +L  Y  CG L     LF +MP+R+VVSW T+IG  + 
Sbjct: 178 GMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSV 237

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
            G   EA + +  M      +PN  +++++L   +++      + +H Y S +  L    
Sbjct: 238 NGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCY-SVKVGLDSQV 296

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
              NA+++ Y KCG V    QVFN    K+++SW+++I+GLA  G    AL  F +MI  
Sbjct: 297 TTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDA 356

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA------CVVDMYGR 360
              P+ VT  +++       LV+  L  FKA   ++    +M           ++DMY +
Sbjct: 357 GAQPNSVTISSILPV-----LVE--LECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAK 409

Query: 361 AGLLEEAEAFIREM 374
           +G   EA      +
Sbjct: 410 SGHSTEASTIFHNL 423


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 149/453 (32%), Positives = 251/453 (55%), Gaps = 9/453 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  +F   L  C           +HA  +  G + DI +  SL+  Y T   I  A ++F
Sbjct: 258 NKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVF 317

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           +++   DVVSWT +I G ++ G  ++A  +F  +    ++P+  T + +++AC+  +S  
Sbjct: 318 DNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACA--ISAN 375

Query: 126 LGKAIHAHSLRNLNE--NNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
           L  A   HS  ++     ++++  A++  Y +CG++     +F  MP+R+VVSW+ MIG 
Sbjct: 376 LNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGA 435

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           Y E G+  EA   F  M+++   EP+  T +N+L+AC  + AL  G  +++  + + DL 
Sbjct: 436 YVENGYGTEAFETFHLMKRSN-IEPDGVTYINLLNACGHLGALDVGMEIYTQ-AIKADLV 493

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
               +GNA+I M  K G V  A  +F+ +  +D I+W+ +I G +++G  R+AL LF  M
Sbjct: 494 SHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRM 553

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
           +     P+ VTF+ ++SACS  G VD+G   F  +     IVP ++ Y C+VD+ GRAG 
Sbjct: 554 LKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGE 613

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           L+EAE  I+ MP++   S+W +LL ACRIH N ++ +R  +  +         +  +S+ 
Sbjct: 614 LDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHM 673

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           +A A  WE+  K+R  +   G++K+ GC+WIEV
Sbjct: 674 YAAAGMWENVAKVRKVMESRGIRKEQGCTWIEV 706



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 212/409 (51%), Gaps = 11/409 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           TF   L ACS         E+HA V+  G + D  I  +L+  YV    +  A Q+F+ +
Sbjct: 160 TFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGL 219

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKLGK 128
              DV ++  ++ G +K G  ++A ++F     + +KPN  + +S+L  C +  +   GK
Sbjct: 220 HIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGK 279

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
           A+HA  +     ++I +  +++  Y  CGS+     +F  M  R+VVSWT MI GYAE G
Sbjct: 280 AVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENG 339

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
             ++A  +F  M++ +  +P+  T +++++AC+  + L+  + +HS +          LV
Sbjct: 340 NIEDAFGLFATMQE-EGIQPDRITYMHIMNACAISANLNHAREIHSQVDI-AGFGTDLLV 397

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
             A+++MY KCG +  A QVF+ +  +D +SWS +I     NG G +A + F LM  + +
Sbjct: 398 STALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNI 457

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD VT+I L++AC H G +D G+ ++   +   ++V  +     ++ M  + G +E A 
Sbjct: 458 EPDGVTYINLLNACGHLGALDVGMEIY-TQAIKADLVSHVPLGNALIIMNAKHGSVERAR 516

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDE----MFDRIRQDLVNKKGVS 413
            +I +  +  +   W A++    +H N      +FDR+ ++      V+
Sbjct: 517 -YIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVT 564



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 192/381 (50%), Gaps = 7/381 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T+ +  + C+         ++  H+I+ G   +I+  N+L+  Y    ++  A QIF+SV
Sbjct: 59  TYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSV 118

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
               VV+W  +I+G ++ G  KEA  +F  +    ++P+  T +SVL ACSS      GK
Sbjct: 119 ENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGK 178

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +HA  +     ++  +  A++  Y++ GS+     +F  +  R+V ++  M+GGYA+ G
Sbjct: 179 EVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSG 238

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
             ++A  +F  M++    +PN+ + +++L  C +  AL++GK VH+       L     V
Sbjct: 239 DWEKAFELFYRMQQVG-LKPNKISFLSILDGCWTPEALAWGKAVHAQ-CMNAGLVDDIRV 296

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
             ++I MY  CG +  A +VF+ +  +D +SW+ +I G A NG    A  LF+ M    +
Sbjct: 297 ATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGI 356

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD +T++ +++AC+    ++    +   +  +      +     +V MY + G +++A 
Sbjct: 357 QPDRITYMHIMNACAISANLNHAREIHSQVD-IAGFGTDLLVSTALVHMYAKCGAIKDAR 415

Query: 369 AFIREMPIEAEWSVWGALLNA 389
                MP   +   W A++ A
Sbjct: 416 QVFDAMP-RRDVVSWSAMIGA 435



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 122/216 (56%), Gaps = 2/216 (0%)

Query: 107 NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLF 166
           ++ T V +   C+ L    LGK +  H ++   + NI   N ++  Y  CG++     +F
Sbjct: 56  DSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIF 115

Query: 167 VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 226
             +  + VV+W  +I GYA+ G  KEA ++F++M   +  EP+  T ++VL ACSS + L
Sbjct: 116 DSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVD-EGLEPSIITFLSVLDACSSPAGL 174

Query: 227 SFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
           ++GK VH+ + T   +S    +G A+++MYVK G +  A QVF+ L  +D  +++ ++ G
Sbjct: 175 NWGKEVHAQVVTAGFVS-DFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGG 233

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
            A +G   +A +LF  M    + P+ ++F++++  C
Sbjct: 234 YAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGC 269


>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
          Length = 921

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 156/455 (34%), Positives = 255/455 (56%), Gaps = 18/455 (3%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S+ +    +AL A  +A        +H+HV++ G + D F+ N+L+  Y        A +
Sbjct: 436 SFTYSFLIKALSAAGVA----PVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARK 491

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLV--SVLSACSSLVSH 124
           +F+ +   DVVSW T ++ + + G       +F   D  P  +T+   ++L   +     
Sbjct: 492 VFDEMPERDVVSWNTAMAAMVREGELAGVRKLF---DEMPEKDTVSWNTILDGYT----- 543

Query: 125 KLGKAIHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
           K G+   A  L + + E N++  + ++  Y + G L     +F KMP +N+V+WT M+  
Sbjct: 544 KAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSA 603

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
            A++G   EA  +F +M K    E + A +V++L+AC+   +LS GK +H Y+  R +L 
Sbjct: 604 CAQKGLVDEAGKLFAQM-KEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKR-NLG 661

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNM-LAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
            S  V NA+I+M+ KCG V  A  VF+     KD +SW+++I G AM+G G +AL+LF+ 
Sbjct: 662 RSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQ 721

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
           M      PD VT I ++SAC+H G VD+G   F  M   Y I+PQ++HY C++D+ GR G
Sbjct: 722 MKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGG 781

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSN 422
           L++EA   I+ MP E    +WG+LL+ACR+H+N E  +    +L   +  + G +A++SN
Sbjct: 782 LIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSN 841

Query: 423 TFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            +A A +W D  K R +++  G +K  G SW+E+N
Sbjct: 842 IYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVELN 876


>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
 gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
          Length = 690

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 151/429 (35%), Positives = 244/429 (56%), Gaps = 14/429 (3%)

Query: 33  HAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFH 92
           H HV + G + D F+ N+L+  Y     +  A ++F+ +   DVVSW T ++ + + G  
Sbjct: 227 HTHVFKLGSVEDTFVGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEV 286

Query: 93  KEAIDMFCGIDVKPNANTLV--SVLSACSSLVSHKLGKAIHAHSL-RNLNENNIILDNAI 149
             A  MF   D  P  +T+   ++L   +     K G+A  A  L + +   N++  + +
Sbjct: 287 DAARSMF---DEMPEKDTVSWNTMLDGYA-----KAGEAEEAFELFQRMPGRNVVSWSTV 338

Query: 150 LDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN 209
           +  Y + G +     +F KMP +N+V+WT M+   A++G   EA  +F EM K    E +
Sbjct: 339 VSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLFTEM-KEAAIELD 397

Query: 210 EATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF 269
              +V++L+AC+    L+ GK +H ++  R  L  S LV NA+++M+ KCG V  A  +F
Sbjct: 398 VVAVVSILAACAESGCLALGKRIHRHVRQR-KLGRSTLVCNALMDMFCKCGCVNRADYIF 456

Query: 270 NM-LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           +  +  KD +SW+ +I G AM+G G +AL LF+ M      PD VT I ++SAC+H GLV
Sbjct: 457 DTEIVEKDSVSWNIIIGGFAMHGHGEKALNLFTQMKQQGFHPDAVTLINVLSACTHMGLV 516

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
           ++G   F  M T Y I P+++HY C+VD+ GR GL++EA   I+ MP E    +WG+LL+
Sbjct: 517 EEGRRFFANMETDYGIKPEIEHYGCMVDLLGRGGLIKEAVDMIKSMPWEPNEVIWGSLLS 576

Query: 389 ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
           ACR+H+N E  +    +L N +  + G +A++SN +A A +W D  K R +++  G +K 
Sbjct: 577 ACRLHKNVEYAELAANELSNLQPSNAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKT 636

Query: 449 TGCSWIEVN 457
            G SWIE++
Sbjct: 637 AGSSWIELD 645


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 165/495 (33%), Positives = 258/495 (52%), Gaps = 45/495 (9%)

Query: 6   SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYG--HLHDIFIQNSLLHFYVTVKDIFS 63
           S   HY F   L++C+          +HA +I  G     + F+ N+LL FY +    + 
Sbjct: 11  SVSRHYRFL--LRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQ 68

Query: 64  AHQIFNSVVF--PDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLS 116
           A ++F+ +     D V WTT++    +     EA+ +F     CG  VKP+  TLV +  
Sbjct: 69  ARKVFDEIPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCG--VKPDEVTLVCLFG 126

Query: 117 ACSSLVSHKLGKAIHAHSLR-------------------------------NLNENNIIL 145
            C+ L    +G   H   ++                                +   +++ 
Sbjct: 127 GCARLGDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVS 186

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
              ILD  IR   + +   +F +MP+RN V+WT MI GY + G  +E+ ++ +EM    E
Sbjct: 187 WTVILDGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLE 246

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
            E N  TL ++L+ACS    L  G++VH+Y     +  ++ +VG A+++MY KCG + IA
Sbjct: 247 MELNYVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIA 306

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
            + F  +  ++ +SW+ ++SGLAM+G GR AL +F  M   A  PDDVTF +++SACSH 
Sbjct: 307 FKFFKKMPQRNVVSWNAMLSGLAMHGLGRAALDIFPQMFKEAK-PDDVTFTSVLSACSHS 365

Query: 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 385
           GLVDQG   F  + +VY I P+++HYAC+VD+ GRAG LEEAE  +REMPI     V G+
Sbjct: 366 GLVDQGCFYFGNLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGS 425

Query: 386 LLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445
           LL +C IH   ++ + + Q+LV     +     L+SN +A A +    N +R  +++ G+
Sbjct: 426 LLGSCSIHGKLQLGEHLLQELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGI 485

Query: 446 KKKTGCSWIEVNPSI 460
           KK  G S I V   +
Sbjct: 486 KKVPGMSSIHVGGQV 500


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 153/455 (33%), Positives = 256/455 (56%), Gaps = 5/455 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           NH+TF+  L AC+ A    +  +IHA + ++  L+D F+  +LL  Y     +  A  +F
Sbjct: 199 NHFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVF 258

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSVLSACSSLVSHKLG 127
           + +   ++VSW ++I G  K   +  AI +F  +  + P+  ++ SVLSAC+ LV    G
Sbjct: 259 DEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLGPDQVSISSVLSACAGLVELDFG 318

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI-GGYAE 186
           K +H   ++      + + N+++D Y +CG       LF     R+VV+W  MI G +  
Sbjct: 319 KQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRC 378

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
           R F ++A + FQ M + +  EP+EA+  ++  A +SI+AL+ G  +HS++     +  S 
Sbjct: 379 RNF-EQACTYFQAMIR-EGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSR 436

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            + ++++ MY KCG +  A QVF      + + W+ +I+    +GC  +A++LF  M+  
Sbjct: 437 -ISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNE 495

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
            V P+ +TF++++SACSH G +D G   F +M+ V+ I P ++HYAC+VD+ GR G LEE
Sbjct: 496 GVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEE 555

Query: 367 AEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAG 426
           A  FI  MP E +  VWGALL AC  H N EM   + + L   +  + G + L+SN +  
Sbjct: 556 ACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPGNYMLLSNIYIR 615

Query: 427 ADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
               E+ +++R  +   G++K++GCSWI+V    F
Sbjct: 616 HGMLEEADEVRRLMGINGVRKESGCSWIDVKNRTF 650



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/388 (28%), Positives = 187/388 (48%), Gaps = 15/388 (3%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +    A K  SL H    A +IH+ ++   +   +   N+LL  Y     I     +FN+
Sbjct: 102 HLLNNAAKLKSLKH----ATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNT 157

Query: 71  VVFP--DVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
              P  +VV+WTT+I+ LS+     +A+  F  +    + PN  T  ++L AC+      
Sbjct: 158 YPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLS 217

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ IHA   ++   N+  +  A+LD Y +CGS+     +F +MP RN+VSW +MI G+ 
Sbjct: 218 EGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFV 277

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +      A+ VF+E+       P++ ++ +VLSAC+ +  L FGK VH  I  R  + + 
Sbjct: 278 KNKLYGRAIGVFREVLSLG---PDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLV 334

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V N++++MY KCG    A ++F     +D ++W+ +I G        QA   F  MI 
Sbjct: 335 -YVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIR 393

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             V PD+ ++ +L  A +    + QG ++   +      V   +  + +V MYG+ G + 
Sbjct: 394 EGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGH-VKNSRISSSLVTMYGKCGSML 452

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIH 393
           +A    RE   E     W A++     H
Sbjct: 453 DAYQVFRETK-EHNVVCWTAMITVFHQH 479



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 134/270 (49%), Gaps = 29/270 (10%)

Query: 111 LVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLF--VK 168
           L  +L+  + L S K    IH+  +   N  ++   N +L  Y +CGS+     LF    
Sbjct: 100 LKHLLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYP 159

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
            P  NVV+WTT+I   +      +A++ F  M +T    PN  T   +L AC+  + LS 
Sbjct: 160 HPSTNVVTWTTLINQLSRSNKPFQALTFFNRM-RTTGIYPNHFTFSAILPACAHAALLSE 218

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
           G+ +H+ I     L+    V  A+++MY KCG + +A  VF+ + +++ +SW+++I G  
Sbjct: 219 GQQIHALIHKHCFLN-DPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFV 277

Query: 289 MNGCGRQALQLFSLMIINAVFPDDVTFIALISACS-----------HGGLVDQGLILFKA 337
            N    +A+ +F  ++  ++ PD V+  +++SAC+           HG +V +GL+    
Sbjct: 278 KNKLYGRAIGVFREVL--SLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLV---- 331

Query: 338 MSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
              VY           +VDMY + GL E+A
Sbjct: 332 -GLVYV-------KNSLVDMYCKCGLFEDA 353


>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
 gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
          Length = 614

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 156/455 (34%), Positives = 255/455 (56%), Gaps = 18/455 (3%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S+ +    +AL A  +A        +H+HV++ G + D F+ N+L+  Y        A +
Sbjct: 129 SFTYSFLIKALSAAGVA----PVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARK 184

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLV--SVLSACSSLVSH 124
           +F+ +   DVVSW T ++ + + G       +F   D  P  +T+   ++L   +     
Sbjct: 185 VFDEMPERDVVSWNTAMAAMVREGELAGVRKLF---DEMPEKDTVSWNTILDGYT----- 236

Query: 125 KLGKAIHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
           K G+   A  L + + E N++  + ++  Y + G L     +F KMP +N+V+WT M+  
Sbjct: 237 KAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSA 296

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
            A++G   EA  +F +M K    E + A +V++L+AC+   +LS GK +H Y+  R +L 
Sbjct: 297 CAQKGLVDEAGKLFAQM-KEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKR-NLG 354

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNM-LAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
            S  V NA+I+M+ KCG V  A  VF+     KD +SW+++I G AM+G G +AL+LF+ 
Sbjct: 355 RSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQ 414

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
           M      PD VT I ++SAC+H G VD+G   F  M   Y I+PQ++HY C++D+ GR G
Sbjct: 415 MKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGG 474

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSN 422
           L++EA   I+ MP E    +WG+LL+ACR+H+N E  +    +L   +  + G +A++SN
Sbjct: 475 LIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSN 534

Query: 423 TFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            +A A +W D  K R +++  G +K  G SW+E+N
Sbjct: 535 IYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVELN 569


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 143/460 (31%), Positives = 264/460 (57%), Gaps = 12/460 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + ++    L ACSL    +   EIH  ++      D+ +Q SL+  Y     +  A ++F
Sbjct: 226 DRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLF 285

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC-------GIDVKPNANTLVSVLSACSSL 121
           + +    +V+W  +I G S    + ++ + F        G  + P+  T++++L  C+ L
Sbjct: 286 DQITDKSIVAWNAMIGGYS---LNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQL 342

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
            +  LGK++H  ++RN    +++L+ A++D Y  CG L     LF +M +RN++SW  MI
Sbjct: 343 EAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMI 402

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
             Y + G  ++A+++FQ++   K  +P+  T+ ++L A + +++L   + +H Y+ T+  
Sbjct: 403 ASYTKNGENRKAMTLFQDL-CNKTLKPDATTIASILPAYAELASLREAEQIHGYV-TKLK 460

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
           L  +  V N+++ MY KCG++  A ++F+ + +KD ISW+TVI   A++G GR +++LFS
Sbjct: 461 LDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISWNTVIMAYAIHGFGRISIELFS 520

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            M      P+  TF++L+ +CS  GLV++G   F +M   Y I P ++HY C++D+ GR 
Sbjct: 521 EMREKGFEPNGSTFVSLLLSCSVAGLVNEGWEYFNSMKRDYNINPGIEHYGCILDLIGRT 580

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           G L+ A+ FI EMP+     +WG+LL A R   + E+ +   + +++ +  + G + L+S
Sbjct: 581 GNLDHAKNFIEEMPLAPTARIWGSLLTASRNKGDVELAEIAAEHILSLEHDNTGCYVLLS 640

Query: 422 NTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           N +A A RWED  +I+  +++ GL+K  GCS ++++   F
Sbjct: 641 NMYAEAGRWEDVERIKFHMKKEGLEKSVGCSVVDLSSKTF 680



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/446 (25%), Positives = 219/446 (49%), Gaps = 25/446 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +++T+   +KAC   +   +   +H  VI+ G   DI+I NSL+  Y  +  I SA  +F
Sbjct: 125 DNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVF 184

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   D+VSW ++ISG    G    ++  F  +    +K +  +++ +L ACS     +
Sbjct: 185 REMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLR 244

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK IH   +R+  E ++++  +++D Y +CG +     LF ++  +++V+W  MIGGY+
Sbjct: 245 NGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYS 304

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
                 E+ +  ++M++  +  P+  T++N+L  C+ + A+  GK VH + + R      
Sbjct: 305 LNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGF-AIRNGFLPH 363

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
            ++  A+++MY +CG +  A  +F  +  ++ ISW+ +I+    NG  R+A+ LF  +  
Sbjct: 364 LVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLFQDLCN 423

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA------CVVDMYG 359
             + PD  T  +++ A +        L   +    ++  V +++  +       +V MYG
Sbjct: 424 KTLKPDATTIASILPAYAE-------LASLREAEQIHGYVTKLKLDSNTFVSNSIVFMYG 476

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR----NDEMFDRIRQDLVNKKGVSVG 415
           + G L  A      M  +   S W  ++ A  IH     + E+F  +R+      G +  
Sbjct: 477 KCGNLLRAREIFDRMTFKDVIS-WNTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTFV 535

Query: 416 TFALMSNTFAGA--DRWEDTNKIRDE 439
           +  L+S + AG   + WE  N ++ +
Sbjct: 536 SL-LLSCSVAGLVNEGWEYFNSMKRD 560



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 182/369 (49%), Gaps = 22/369 (5%)

Query: 52  LHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNA 108
           L  YV    + +A  +F ++   D   W  +I G    G   +A+D +  ++   V+ + 
Sbjct: 67  LSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRGDN 126

Query: 109 NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168
            T   V+ AC  L     G+ +H   +++  + +I + N+++  Y + G + S   +F +
Sbjct: 127 FTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFRE 186

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           MP R++VSW +MI GY   G    ++S F+EM+ +   + +  +++ +L ACS    L  
Sbjct: 187 MPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASG-IKLDRFSVIGILGACSLEGFLRN 245

Query: 229 GKYVH-SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGL 287
           GK +H   + +R +L V  +V  ++++MY KCG +  A ++F+ +  K  ++W+ +I G 
Sbjct: 246 GKEIHCQMMRSRLELDV--MVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGY 303

Query: 288 AMNGCGRQALQLFS----LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM---ST 340
           ++N    Q+ + F+    +     + PD +T I L+  C+      + ++L K++   + 
Sbjct: 304 SLNA---QSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQL----EAILLGKSVHGFAI 356

Query: 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFD 400
               +P +     +VDMYG  G L+ AE    +M  E     W A++ +   +  +    
Sbjct: 357 RNGFLPHLVLETALVDMYGECGKLKPAECLFGQMN-ERNLISWNAMIASYTKNGENRKAM 415

Query: 401 RIRQDLVNK 409
            + QDL NK
Sbjct: 416 TLFQDLCNK 424



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 122/263 (46%), Gaps = 11/263 (4%)

Query: 132 AHSLRN---LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
           A S RN   L E N +     L  Y+  G + +   LF  M + +   W  MI G+ + G
Sbjct: 46  ARSKRNQSFLVERNSVSLTRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNG 105

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH-SYISTRYDLSVSNL 247
              +AV  +  ME       +  T   V+ AC  +  L+ G+ VH   I +  DL +   
Sbjct: 106 LFWDAVDFYHRME-FGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDI--Y 162

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           +GN++I MY K G +  A  VF  +  +D +SW+++ISG    G G ++L  F  M  + 
Sbjct: 163 IGNSLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASG 222

Query: 308 VFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
           +  D  + I ++ ACS  G +  G  I  + M +  E+   +Q    +VDMY + G ++ 
Sbjct: 223 IKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQ--TSLVDMYAKCGRMDY 280

Query: 367 AEAFIREMPIEAEWSVWGALLNA 389
           AE    ++  +     W A++  
Sbjct: 281 AERLFDQI-TDKSIVAWNAMIGG 302


>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 156/484 (32%), Positives = 260/484 (53%), Gaps = 37/484 (7%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T++  L+ C       + +++HAH    G +  + I N +L  Y+    + +A ++F+ +
Sbjct: 91  TYSTLLQLCLQLRALDEGMKVHAHTKTSGFVPGVVISNRILDMYIKCNSLVNAKRLFDEM 150

Query: 72  VFPDVVSWTTIISGLSKCGF-------------------------------HKEAIDMFC 100
              D+ SW  +ISG +K G                                H+EA+++F 
Sbjct: 151 AERDLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALELFR 210

Query: 101 GI----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRC 156
            +    + K N  T+ S L+A +++ S  LGK IH H LR   + + ++ +A+ D Y +C
Sbjct: 211 AMQRHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGKC 270

Query: 157 GSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNV 216
           GS+    ++F K   R+VVSWT MI  Y + G  +E  ++F ++ K+    PNE T   V
Sbjct: 271 GSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSG-IWPNEFTFSGV 329

Query: 217 LSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD 276
           L+AC+  +A   GK VH Y+ TR     S+   + +++MY KCG++  A +VFN +   D
Sbjct: 330 LNACADHAAEELGKQVHGYM-TRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGMPRPD 388

Query: 277 KISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFK 336
            +SW+++ISG A NG   +ALQ F L++ +   PD +TF+ ++SAC+H GLVD+GL  F 
Sbjct: 389 LVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFD 448

Query: 337 AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND 396
           ++   + +     HYAC++D+  R+G L+EAE  I +MPIE +  +W +LL  CRIH N 
Sbjct: 449 SIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCRIHGNL 508

Query: 397 EMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           ++  R  + L   +  +  T+  ++N +A A  W    ++R  +   G+ KK G SWIE+
Sbjct: 509 KLAKRAAEALFEIEPENPATYTTLANIYATAGLWGGVAEVRKVMDARGVVKKPGLSWIEI 568

Query: 457 NPSI 460
              +
Sbjct: 569 KREV 572



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 167/351 (47%), Gaps = 46/351 (13%)

Query: 82  IISGLSKCGFHKEAIDMFC-------GIDV-----KPNANTLVSVLSACSSLVSHKLGKA 129
           ++  L K    KEAID+ C        I +     +P+A T  ++L  C  L +   G  
Sbjct: 51  LVKRLCKDNNFKEAIDILCEQKRLREAIQILDHVDRPSAATYSTLLQLCLQLRALDEGMK 110

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           +HAH+  +     +++ N ILD YI+C SL +   LF +M +R++ SW  MI GYA+ G 
Sbjct: 111 VHAHTKTSGFVPGVVISNRILDMYIKCNSLVNAKRLFDEMAERDLCSWNIMISGYAKAGR 170

Query: 190 CK-------------------------------EAVSVFQEMEKTKEAEPNEATLVNVLS 218
            +                               EA+ +F+ M++ +  + N+ T+ + L+
Sbjct: 171 LQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKCNKFTMSSALA 230

Query: 219 ACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI 278
           A ++I +L  GK +H +I  R  L +  +V +A+ +MY KCG +G A  +F+    +D +
Sbjct: 231 ASAAIQSLHLGKEIHGHI-LRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVV 289

Query: 279 SWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM 338
           SW+ +I      G   +   LFS ++ + ++P++ TF  +++AC+     + G  +   M
Sbjct: 290 SWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYM 349

Query: 339 STVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           + +    P     + +V MY + G ++ A      MP   +   W +L++ 
Sbjct: 350 TRI-GFDPSSFAASTLVHMYTKCGNIKNARRVFNGMP-RPDLVSWTSLISG 398



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 99/220 (45%), Gaps = 18/220 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +TF+  L AC+     +   ++H ++   G     F  ++L+H Y    +I +A ++F
Sbjct: 322 NEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVF 381

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACS--SLVS 123
           N +  PD+VSWT++ISG ++ G   EA+  F        +P+  T V VLSAC+   LV 
Sbjct: 382 NGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVD 441

Query: 124 HKL---GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTT 179
             L         H L +  ++   L    +D   R G L     +  KMP + +   W +
Sbjct: 442 KGLEYFDSIKEKHGLTHTADHYACL----IDLLSRSGRLQEAEDIIDKMPIEPDKFLWAS 497

Query: 180 MIGG---YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNV 216
           ++GG   +      K A     E+E    A     TL N+
Sbjct: 498 LLGGCRIHGNLKLAKRAAEALFEIEPENPA--TYTTLANI 535


>gi|356541012|ref|XP_003538978.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g50270-like [Glycine max]
          Length = 560

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 155/457 (33%), Positives = 259/457 (56%), Gaps = 15/457 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +TF   LK  S +   Q    I+A + + G   D+FI N+L+  +     + SA Q+F
Sbjct: 107 DKHTFPLLLKTFSKSIA-QNPFMIYAQIFKLGFDLDLFIGNALIPAFANSGFVESARQVF 165

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           +   F D V+WT +I+G  K     EA+  F  +   D   +A T+ S+L A + +    
Sbjct: 166 DESPFQDTVAWTALINGYVKNDCPGEALKCFVKMRLRDRSVDAVTVASILRAAALVGDAD 225

Query: 126 LGKAIHAHSLRNLNENNIILD----NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
            G+ +H   +       + LD    +A++D Y +CG       +F ++P R+VV WT ++
Sbjct: 226 FGRWVHGFYVE---AGRVQLDGYVFSALMDMYFKCGHCEDACKVFNELPHRDVVCWTVLV 282

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS-TRY 240
            GY +    ++A+  F +M     A PN+ TL +VLSAC+ + AL  G+ VH YI   + 
Sbjct: 283 AGYVQSNKFQDALRAFWDMLSDNVA-PNDFTLSSVLSACAQMGALDQGRLVHQYIECNKI 341

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
           +++V+  +G A+++MY KCG +  A++VF  +  K+  +W+ +I+GLA++G    AL +F
Sbjct: 342 NMNVT--LGTALVDMYAKCGSIDEALRVFENMPVKNVYTWTVIINGLAVHGDALGALNIF 399

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
             M+ + + P++VTF+ +++ACSHGG V++G  LF+ M   Y + P+M HY C+VDM GR
Sbjct: 400 CCMLKSGIQPNEVTFVGVLAACSHGGFVEEGKRLFELMKHAYHLKPEMDHYGCMVDMLGR 459

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           AG LE+A+  I  MP++    V GAL  AC +H+  EM + I   LVN++    G++AL+
Sbjct: 460 AGYLEDAKQIIDNMPMKPSPGVLGALFGACLVHKAFEMGEHIGNLLVNQQPNHSGSYALL 519

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +N +     WE   ++R  ++ + + K  G S IEV+
Sbjct: 520 ANLYKMCQNWEAAAQVRKLMKGLRVVKAPGYSRIEVD 556


>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 583

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 149/458 (32%), Positives = 268/458 (58%), Gaps = 14/458 (3%)

Query: 14  TQALKACSLAHPHQKALE-IHAHVI--EYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           + A +A   A P  K L+ +HAH+I   YG    +  +  L+    + + I   H +F S
Sbjct: 9   SAAYEAIVRAGPRVKQLQQVHAHLIVTSYGRSRSLLTK--LITLACSARAIAYTHLLFLS 66

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLG 127
           V  PD   + ++I   SK       +  +  +   +V P+  T  SV+ +C+ L + K+G
Sbjct: 67  VPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALKIG 126

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           K +H H++ +    +  +  A++ FY +CG + +   +F +MP+++VV+W +++ G+ + 
Sbjct: 127 KGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEAARQVFDRMPEKSVVAWNSLVSGFEQN 186

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G  ++A+ VF +M ++   EP+ AT V++LSAC+   A+S G +VH YI +   L V+  
Sbjct: 187 GLAEDAIRVFYQMRESG-FEPDSATFVSLLSACAQTGAISLGSWVHQYIVSE-GLDVNVK 244

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN- 306
           +G A+IN+Y +CGDVG A +VF+ +   +  +W+ +IS    +G G+QA+ LF+ M  + 
Sbjct: 245 LGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGKQAVDLFNKMEDDC 304

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
              P++VTF+A++SAC+H GLV+ G  ++K M+  Y ++P ++H+ C+VDM GRAG L+E
Sbjct: 305 GSIPNNVTFVAVLSACAHAGLVEDGRSVYKRMTESYRLIPGVEHHVCIVDMLGRAGFLDE 364

Query: 367 AEAFIREMPIEAEWS---VWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           A  FI+++      +   +W A+L AC++HRN ++   I + L+  +  + G   ++SN 
Sbjct: 365 AYRFIQQLDATGNATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPENPGHHVMLSNI 424

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           +A + + ++ + IRD + R  L+K+ G S IEV    +
Sbjct: 425 YALSGKTDEVSHIRDRMMRNNLRKQVGYSIIEVENKTY 462



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 134/245 (54%), Gaps = 3/245 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           MLS   S ++YTFT  +K+C+     +    +H H +  G   D ++Q +L+ FY    D
Sbjct: 98  MLSSNVSPSNYTFTSVIKSCADLSALKIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGD 157

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           + +A Q+F+ +    VV+W +++SG  + G  ++AI +F  +     +P++ T VS+LSA
Sbjct: 158 MEAARQVFDRMPEKSVVAWNSLVSGFEQNGLAEDAIRVFYQMRESGFEPDSATFVSLLSA 217

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C+   +  LG  +H + +    + N+ L  A+++ Y RCG +     +F KM + NV +W
Sbjct: 218 CAQTGAISLGSWVHQYIVSEGLDVNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAW 277

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
           T MI  Y   G+ K+AV +F +ME    + PN  T V VLSAC+    +  G+ V+  ++
Sbjct: 278 TAMISAYGTHGYGKQAVDLFNKMEDDCGSIPNNVTFVAVLSACAHAGLVEDGRSVYKRMT 337

Query: 238 TRYDL 242
             Y L
Sbjct: 338 ESYRL 342


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 149/461 (32%), Positives = 259/461 (56%), Gaps = 11/461 (2%)

Query: 4   CPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFS 63
            P+   ++TF   + AC+ +   + A ++HAH+       D F+ NSL+H Y     +  
Sbjct: 48  APTPRVYHTF---ITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLE 104

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 120
           A ++F+ +   D+VSWT++I+G ++    +EAI +  G+     KPN  T  S+L A  +
Sbjct: 105 ARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGA 164

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
                +G+ IHA +++     ++ + +A+LD Y RCG +     +F K+  +N VSW  +
Sbjct: 165 HADSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNAL 224

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTR 239
           I G+A +G  + A+  F EM +    E    T  +V S+ + + AL  GK+VH++ I +R
Sbjct: 225 ISGFARKGDGETALMTFAEMLRNG-FEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSR 283

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
             ++     GN +++MY K G +  A +VF+ +  KD ++W+T+++  A  G G++A+  
Sbjct: 284 QKMTA--FAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSH 341

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
           F  M  + ++ + VTF+ +++ACSHGGLV +G   F+ M   Y++ P++ H+  VV + G
Sbjct: 342 FEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYFEMMKE-YDLEPEIDHFVTVVALLG 400

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFAL 419
           RAGLL  A  FI +MPIE   +VWGALL ACR+H+N ++       +        G   L
Sbjct: 401 RAGLLNFALVFIFKMPIEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVL 460

Query: 420 MSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           + N +A   +W+   ++R  ++  G+KK+  CSW+E+  S+
Sbjct: 461 LYNIYASTGQWDAAARVRRIMKTTGVKKEPACSWVEMENSV 501



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 155/296 (52%), Gaps = 8/296 (2%)

Query: 96  IDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIR 155
           +D+    ++ P      + ++AC+   + +  + +HAH   +    +  LDN+++  Y +
Sbjct: 39  LDLLDAGELAPTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCK 98

Query: 156 CGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVN 215
           CGS+     +F +M ++++VSWT++I GYA+    +EA+ +   M K +  +PN  T  +
Sbjct: 99  CGSVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGR-FKPNGFTFAS 157

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           +L A  + +    G+ +H+ ++ + D      VG+A+++MY +CG + +A  VF+ L  K
Sbjct: 158 LLKAAGAHADSGIGRQIHA-LAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSK 216

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILF 335
           + +SW+ +ISG A  G G  AL  F+ M+ N       T+ ++ S+ +  G ++QG  + 
Sbjct: 217 NGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVH 276

Query: 336 KAMSTVYEIVPQMQHYA--CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
             M    +   +M  +A   ++DMY ++G + +A      +  + +   W  +L A
Sbjct: 277 AHMIKSRQ---KMTAFAGNTLLDMYAKSGSMIDARKVFDRVD-DKDLVTWNTMLTA 328


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 157/433 (36%), Positives = 256/433 (59%), Gaps = 6/433 (1%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           EIHA+ ++     ++ I N+L+  Y     +  A  +F+ ++  D++SWTT+I+  ++  
Sbjct: 234 EIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNN 293

Query: 91  FHKEAIDMFCGIDVKP-NANTLV--SVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
            H EA+ +   +  K  + +T++  S L ACS L      K +H ++L+    +++++ N
Sbjct: 294 CHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKR-GLSDLMMQN 352

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
            I+D Y  CG++     +F  +  ++VVSWT+MI  Y   G   EA+ VF  M++T   E
Sbjct: 353 MIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKET-SVE 411

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
           P+  TLV++LSA +S+SAL+ GK +H +I  R    +     N++++MY  CG +  A +
Sbjct: 412 PDSITLVSILSAAASLSALNKGKEIHGFI-FRKGFMLEGSTVNSLVDMYACCGSLENAYK 470

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           VF     K  + W+T+I+   M+G G+ A++LFS+M    + PD +TF+AL+ ACSH GL
Sbjct: 471 VFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGL 530

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           +++G  L + M   Y++ P  +HYAC+VD+ GRA  LEEA  F++ M IE    VW A L
Sbjct: 531 INEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAFL 590

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
            ACRIH N ++ +   Q L++    S G++ L+SN FA + RW+D  ++R  ++  GLKK
Sbjct: 591 GACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRMKGGGLKK 650

Query: 448 KTGCSWIEVNPSI 460
             GCSWIEV   +
Sbjct: 651 NPGCSWIEVGNKV 663



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 122/401 (30%), Positives = 220/401 (54%), Gaps = 34/401 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YT   AL+AC  +   +  +EIHA +++   + D+++ N+L+  +V    +  A +IF
Sbjct: 111 NTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIF 170

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           + +   D ++W ++I+G ++ G + EA+  FCG+   ++KP+  +L+S+L+A   L    
Sbjct: 171 DELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLL 230

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK IHA++++N  ++N+ + N ++D Y +C  +A  G +F KM  ++++SWTT+I  YA
Sbjct: 231 NGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYA 290

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +     EA+ + ++++ TK  + +   + + L ACS +  LS  K VH Y   R    +S
Sbjct: 291 QNNCHTEALKLLRKVQ-TKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKR---GLS 346

Query: 246 NL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           +L + N +I++Y  CG++  A ++F  +  KD +SW+++IS    NG   +AL +F LM 
Sbjct: 347 DLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMK 406

Query: 305 INAVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
             +V PD +T ++++SA +           HG +  +G +L    STV  +         
Sbjct: 407 ETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFML--EGSTVNSL--------- 455

Query: 354 VVDMYGRAGLLEEA-EAFIREMPIEAEWSVWGALLNACRIH 393
            VDMY   G LE A + FI          +W  ++NA  +H
Sbjct: 456 -VDMYACCGSLENAYKVFI--CTRSKSLVLWTTMINAYGMH 493



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/431 (28%), Positives = 213/431 (49%), Gaps = 35/431 (8%)

Query: 8   YNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           ++ +TF   LKAC +     +  EIH  +I+ G+   +F+ NSL+  Y    DI  A ++
Sbjct: 8   FDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKL 67

Query: 68  FNSV-VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVS 123
           F+ +    DVVSW +IIS  S  G   EA+ +F  +    V  N  TLV+ L AC     
Sbjct: 68  FDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSF 127

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            KLG  IHA  L++    ++ + NA++  ++R G ++    +F ++ +++ ++W +MI G
Sbjct: 128 KKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAG 187

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           + + G   EA+  F  ++     +P+E +L+++L+A   +  L  GK +H+Y    + L 
Sbjct: 188 FTQNGLYNEALQFFCGLQDAN-LKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNW-LD 245

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
            +  +GN +I+MY KC  V  A  VF+ +  KD ISW+TVI+  A N C  +AL+L   +
Sbjct: 246 SNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKV 305

Query: 304 IINAVFPDDVTFIALISAC------SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
               +  D +   + + AC      SH   V  G  L + +S +      MQ+   ++D+
Sbjct: 306 QTKGMDVDTMMIGSTLLACSGLRCLSHAKEV-HGYTLKRGLSDL-----MMQNM--IIDV 357

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTF 417
           Y   G +  A      +  +   S W +++ +C +H            L N+   ++G F
Sbjct: 358 YADCGNINYATRMFESIKCKDVVS-WTSMI-SCYVHNG----------LANE---ALGVF 402

Query: 418 ALMSNTFAGAD 428
            LM  T    D
Sbjct: 403 YLMKETSVEPD 413



 Score = 42.0 bits (97), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 28  KALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS 87
           K  EIH  +   G + +    NSL+  Y     + +A+++F       +V WTT+I+   
Sbjct: 432 KGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYG 491

Query: 88  KCGFHKEAIDMFCGIDVK---PNANTLVSVLSACS 119
             G  K A+++F  ++ +   P+  T +++L ACS
Sbjct: 492 MHGRGKAAVELFSIMEDQKLIPDHITFLALLYACS 526


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 149/461 (32%), Positives = 262/461 (56%), Gaps = 15/461 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  TF   +K+CS  +      +IH     +G+  DIF+ ++L+  Y     +  A ++F
Sbjct: 85  NRSTFPCTIKSCSSLYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLF 144

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF--------------CGIDVKPNANTLVSV 114
           + +   +VVSWT++ISG  +    +EA+ +F               G+ V  ++  L  V
Sbjct: 145 DEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCV 204

Query: 115 LSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV 174
           +SAC+ +    + + +H  +++   E  + + N ++D Y +CG ++    +F  M + +V
Sbjct: 205 ISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDV 264

Query: 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
            SW ++I  YA+ G   EA S+F +M K  E   N  TL  VL AC+   AL  GK +H 
Sbjct: 265 CSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHD 324

Query: 235 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
            +  + +L  + +VG ++++MY KCG V +A + F+ L  K+  SW+ +++G  M+G G+
Sbjct: 325 QV-VKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGK 383

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
           +A+++F  MI   + P+ +TF+++++ACSH GL+ +G   F  M   +++ P ++HY+C+
Sbjct: 384 EAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCM 443

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414
           VD+ GRAG L+EA   I+EM ++ ++ VWG+LL ACRIH+N E+ +   + L      + 
Sbjct: 444 VDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNC 503

Query: 415 GTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
           G + L+SN +A A RW+D  ++R  ++  GL K  G S +E
Sbjct: 504 GYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVE 544



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 162/312 (51%), Gaps = 17/312 (5%)

Query: 76  VVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLVSHKLGKAIHA 132
           V SW +II+  ++ G   +A+  F     + + PN +T    + +CSSL     GK IH 
Sbjct: 51  VYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIHQ 110

Query: 133 HSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKE 192
            +      ++I + +A++D Y +CG L     LF ++P+RNVVSWT+MI GY +    +E
Sbjct: 111 QAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERARE 170

Query: 193 AVSVFQEMEKTKEAEPNE----------ATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
           AV +F+E     E + +E            L  V+SAC+ +   S  + VH  ++ +   
Sbjct: 171 AVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHG-LAVKKGF 229

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
                VGN +++ Y KCG++ ++ +VF+ +   D  SW+++I+  A NG   +A  LFS 
Sbjct: 230 EGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSD 289

Query: 303 MIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
           M+    V  + VT  A++ AC+H G +  G  +   +  + E+   +     +VDMY + 
Sbjct: 290 MVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKM-ELEDNLVVGTSIVDMYCKC 348

Query: 362 GLLEEA-EAFIR 372
           G +E A +AF R
Sbjct: 349 GRVEMARKAFDR 360



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 7/117 (5%)

Query: 8   YNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           YN  T +  L AC+ +   Q    IH  V++     ++ +  S++  Y     +  A + 
Sbjct: 298 YNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKA 357

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACS 119
           F+ +   +V SWT +++G    G  KEA+ +F     CGI  KPN  T VSVL+ACS
Sbjct: 358 FDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGI--KPNYITFVSVLAACS 412


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 154/469 (32%), Positives = 246/469 (52%), Gaps = 41/469 (8%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ--IFNSVVFPDVVSWTTIISGLSK 88
           ++HAH+   G     F+   LL     +      +   +F  V +P+   WT +I G + 
Sbjct: 57  QVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALIRGYAL 116

Query: 89  CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHS-LRNLNENNII 144
            G   E++ ++  +    + P + T  ++L ACS+ +   LG+ +H  + L     +++ 
Sbjct: 117 QGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDLY 176

Query: 145 LDNAILDFYIRCGSLASCGY--------------------------------LFVKMPKR 172
           + N ++D Y++CG L  CG+                                LF  +P +
Sbjct: 177 VGNTLIDMYVKCGCLG-CGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMK 235

Query: 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYV 232
           ++V+WT M+ GYA+    +EA+ VF+ M+     + +E TLV V+SAC+ + A  +  +V
Sbjct: 236 DMVAWTAMVTGYAQNARPREALEVFERMQAAG-VKTDEVTLVGVISACAQLGAAKYANWV 294

Query: 233 HSYISTRYDLSVSN-LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNG 291
                       SN +VG+A+I+MY KCG V  A +VF  +  ++  S+S++I G AM+G
Sbjct: 295 RDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHG 354

Query: 292 CGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY 351
               A++LF  M+   + P+ VTFI +++ACSH G+V+QG  LF  M   + + P   HY
Sbjct: 355 LAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHY 414

Query: 352 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKG 411
           AC+VD+ GRAG LEEA   ++ MP+     VWGALL ACRIH N +M       L   + 
Sbjct: 415 ACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFELEP 474

Query: 412 VSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
             +G + L+SN +A A RW+D +K+R  +R  GLKK  GCSW+E    I
Sbjct: 475 NGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKKGI 523



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 181/395 (45%), Gaps = 86/395 (21%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFN 69
           +TFT  LKACS A       ++H   I  G    D+++ N+L+  YV    +   H++F+
Sbjct: 140 FTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFD 199

Query: 70  SVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID-------------------------- 103
            ++  DV+SWT++I   +K G  + A ++F G+                           
Sbjct: 200 EMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEV 259

Query: 104 --------VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNE-------NNIILDNA 148
                   VK +  TLV V+SAC+     +LG A +A+ +R++ E       +N+++ +A
Sbjct: 260 FERMQAAGVKTDEVTLVGVISACA-----QLGAAKYANWVRDVAEQSGFGPTSNVVVGSA 314

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
           ++D Y +CGS+     +F +M +RNV S+++MI G+A  G    A+ +F EM KT E +P
Sbjct: 315 LIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKT-EIKP 373

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           N  T + VL+ACS    +  G+ + + +   + ++ S                       
Sbjct: 374 NRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPS----------------------- 410

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
                   +  ++ ++  L   G   +AL L  +M +N   P    + AL+ AC   G  
Sbjct: 411 --------EDHYACMVDLLGRAGRLEEALNLVKMMPMN---PHGGVWGALLGACRIHGNP 459

Query: 329 DQGLILFKAMSTVYEIVPQ-MQHYACVVDMYGRAG 362
           D   I   A S ++E+ P  + +Y  + ++Y  AG
Sbjct: 460 DMAQI---AASHLFELEPNGIGNYILLSNIYASAG 491



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 131/306 (42%), Gaps = 54/306 (17%)

Query: 111 LVSVLSACSSLVSHKLGKAIHAHSLRN-LNENNIILDNAI---------LDFYIRCGSLA 160
           LVSVL  C+ +      K +HAH  R  L +   +L   +         +D Y R     
Sbjct: 42  LVSVLHGCTHI---NQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPR----- 93

Query: 161 SCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
               +F ++   N   WT +I GYA +G   E+V ++  M + +   P   T   +L AC
Sbjct: 94  ---LVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRR-QGIGPVSFTFTALLKAC 149

Query: 221 SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG----------------- 263
           S+   ++ G+ VH+             VGN +I+MYVKCG +G                 
Sbjct: 150 SAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISW 209

Query: 264 --------------IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
                          A ++F+ L  KD ++W+ +++G A N   R+AL++F  M    V 
Sbjct: 210 TSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVK 269

Query: 310 PDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            D+VT + +ISAC+  G       +   A  + +     +   + ++DMY + G +E+A 
Sbjct: 270 TDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAY 329

Query: 369 AFIREM 374
                M
Sbjct: 330 KVFERM 335


>gi|125551786|gb|EAY97495.1| hypothetical protein OsI_19422 [Oryza sativa Indica Group]
          Length = 620

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 149/418 (35%), Positives = 242/418 (57%), Gaps = 7/418 (1%)

Query: 49  NSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEA----IDMFCGIDV 104
           +SL+  Y  + D  +A ++FN +   DVVSW  ++    + G + E      DM     V
Sbjct: 167 HSLITIYSYLDDPGAARKVFNGIPSRDVVSWNAMMKAYGRVGMNGEVGRMLRDMVKDGAV 226

Query: 105 KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGY 164
            PNA TL  VL+AC       LG+ +   S     E + ++ +A++  Y +CG +A    
Sbjct: 227 VPNAVTLAVVLAACRDEGDLVLGRWVEEWSKSAGMETDSLVGSALVGMYEKCGEIAEARR 286

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224
           +F  +  ++VV+W  MI GYA+ G   EA+S+F  M+K     P++ TL  VLSACS++ 
Sbjct: 287 VFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVC-PDKITLAGVLSACSAVG 345

Query: 225 ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVI 284
           AL  G  +  Y S R  L  +  VG A+++MY KCGD+  AI+VF  +  K+  SW+ +I
Sbjct: 346 ALELGSELDGYASCR-GLYNNVYVGTALVDMYAKCGDLDKAIEVFRKMRCKNVASWNALI 404

Query: 285 SGLAMNGCGRQALQLFSLMI-INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 343
            GLA NG G +A+Q F LM   + + PDD+TFI ++SAC H GLV  G   F ++++ ++
Sbjct: 405 CGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTSEFQ 464

Query: 344 IVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIR 403
           I+P+++HY+C+VD+  R+G LEE   FI ++P + +  + GALL ACR  +N E+ +R+ 
Sbjct: 465 IIPKIEHYSCMVDLLARSGHLEEVWDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVI 524

Query: 404 QDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
             ++  +  +   + + S  +A + R +D+ K+R  +R  G+ K  GCSW+E++  + 
Sbjct: 525 NRIIQLEPTNSWNYVVSSKIYASSGRLDDSAKMRGPMRERGVNKTPGCSWVEISGKVL 582



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 111/207 (53%), Gaps = 5/207 (2%)

Query: 40  GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF 99
           G   D  + ++L+  Y    +I  A ++F+S++  DVV+W  +I+G ++ G   EAI +F
Sbjct: 260 GMETDSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLF 319

Query: 100 CGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAH-SLRNLNENNIILDNAILDFYIR 155
             +    V P+  TL  VLSACS++ + +LG  +  + S R L  NN+ +  A++D Y +
Sbjct: 320 HNMKKAGVCPDKITLAGVLSACSAVGALELGSELDGYASCRGL-YNNVYVGTALVDMYAK 378

Query: 156 CGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVN 215
           CG L     +F KM  +NV SW  +I G A  G   EA+  F+ M      +P++ T + 
Sbjct: 379 CGDLDKAIEVFRKMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIG 438

Query: 216 VLSACSSISALSFGKYVHSYISTRYDL 242
           VLSAC     +  GK   + +++ + +
Sbjct: 439 VLSACVHAGLVKDGKRWFNSLTSEFQI 465



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 7/119 (5%)

Query: 4   CPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFS 63
           CP   +  T    L ACS     +   E+  +    G  +++++  +L+  Y    D+  
Sbjct: 328 CP---DKITLAGVLSACSAVGALELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLDK 384

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSAC 118
           A ++F  +   +V SW  +I GL+  G   EAI  F  +     +KP+  T + VLSAC
Sbjct: 385 AIEVFRKMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSAC 443



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 71/156 (45%), Gaps = 11/156 (7%)

Query: 239 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQ 298
           + DL+  +   +++I +Y    D G A +VFN +  +D +SW+ ++      G   +  +
Sbjct: 156 KIDLNSHDHTVHSLITIYSYLDDPGAARKVFNGIPSRDVVSWNAMMKAYGRVGMNGEVGR 215

Query: 299 LFSLMIIN-AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV--- 354
           +   M+ + AV P+ VT   +++AC      D+G ++       +     M+  + V   
Sbjct: 216 MLRDMVKDGAVVPNAVTLAVVLAACR-----DEGDLVLGRWVEEWSKSAGMETDSLVGSA 270

Query: 355 -VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
            V MY + G + EA      + I+ +   W A++  
Sbjct: 271 LVGMYEKCGEIAEARRVFDSI-IDKDVVAWNAMITG 305


>gi|242035545|ref|XP_002465167.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
 gi|241919021|gb|EER92165.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
          Length = 564

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 145/391 (37%), Positives = 231/391 (59%), Gaps = 5/391 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T +  L  C L      AL +H + ++ G   ++F+ N+L+  Y  +  +  A  +F  +
Sbjct: 170 TLSSVLPMCVLLGDRALALVMHVYAVKRGLSGELFVCNALIDVYGKLGMLVEARWVFGGM 229

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              D+V+W +IIS   + G    A+++F G+    V P+  TLVS+ SA +     +  K
Sbjct: 230 ALRDLVTWNSIISAYEQGGKVAAAVELFHGMMKSGVSPDVLTLVSLASAVAQCGDERGAK 289

Query: 129 AIHAH-SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           ++H +   R  +  +II  NA++D Y +   + +   +F  +P R+VVSW T+I GY + 
Sbjct: 290 SVHCYVRRRGWDVGDIIAGNAVVDMYAKLSKIDAAQMVFDNLPDRDVVSWNTLITGYMQN 349

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G   EAV ++ +M+  +  +P + T V++L A S++ AL  G  +H+ +S +  L++   
Sbjct: 350 GLSNEAVRIYNDMQNHEGLKPIQGTFVSILPAYSNLGALQQGMRMHA-LSIKTGLNLDVY 408

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V   +I++Y KCG +  A+ +F  +  +    W+ +I+GL ++G G +AL LFS M    
Sbjct: 409 VSTCLIDLYAKCGKLVEAMLLFEHMPRRSTGPWNAIIAGLGVHGHGAKALNLFSQMQQEG 468

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           + PD+VTF++L++ACSH GLVDQG   F  M TVY IVP  +HYAC+VDM GRAG L+EA
Sbjct: 469 IKPDNVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYACMVDMLGRAGQLDEA 528

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEM 398
             FI+ MPI+ + +VWGALL ACRIH N E+
Sbjct: 529 FEFIQGMPIKPDSAVWGALLGACRIHGNVEL 559



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/419 (27%), Positives = 211/419 (50%), Gaps = 17/419 (4%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLH-DIFIQNSLLHFYVTVKDIFS 63
           P   + +TF   ++A   A     A + HA  +  G LH ++F   SL+H Y+    +  
Sbjct: 64  PLRPDSFTFPPLVRA---APGPASAAQFHACALRLGLLHPNVFASGSLVHAYLRFGRVAE 120

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSS 120
           A+++F+ +   DV +W  ++SGL +     +A+ +F    G  V  +A TL SVL  C  
Sbjct: 121 AYRVFDEMPERDVPAWNAMLSGLCRNARAVDAVALFGRMVGEGVAGDAVTLSSVLPMCVL 180

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           L    L   +H ++++      + + NA++D Y + G L    ++F  M  R++V+W ++
Sbjct: 181 LGDRALALVMHVYAVKRGLSGELFVCNALIDVYGKLGMLVEARWVFGGMALRDLVTWNSI 240

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR- 239
           I  Y + G    AV +F  M K+    P+  TLV++ SA +        K VH Y+  R 
Sbjct: 241 ISAYEQGGKVAAAVELFHGMMKSG-VSPDVLTLVSLASAVAQCGDERGAKSVHCYVRRRG 299

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
           +D+    + GNAV++MY K   +  A  VF+ L  +D +SW+T+I+G   NG   +A+++
Sbjct: 300 WDVG-DIIAGNAVVDMYAKLSKIDAAQMVFDNLPDRDVVSWNTLITGYMQNGLSNEAVRI 358

Query: 300 FSLMIIN-AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMY 358
           ++ M  +  + P   TF++++ A S+ G + QG+ +  A+S    +   +    C++D+Y
Sbjct: 359 YNDMQNHEGLKPIQGTFVSILPAYSNLGALQQGMRM-HALSIKTGLNLDVYVSTCLIDLY 417

Query: 359 GRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQDLVNKKGVS 413
            + G L EA      MP  +    W A++    +H +      +F +++Q+ +    V+
Sbjct: 418 AKCGKLVEAMLLFEHMPRRST-GPWNAIIAGLGVHGHGAKALNLFSQMQQEGIKPDNVT 475


>gi|345505210|gb|AEN99829.1| chlororespiratory reduction 4, partial [Barbarea verna]
          Length = 588

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 158/492 (32%), Positives = 257/492 (52%), Gaps = 36/492 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    S + ++ +  LKACS     Q+ ++IH  + + G   D+F+QN L+  Y+    
Sbjct: 87  MLENGVSVDKFSLSLVLKACSRLGFVQEGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGC 146

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNA-NTLVSVLSACS 119
           +  A QIF+ +   D VS+ ++I G  KCG    A ++F   D+ P     L+S  S  S
Sbjct: 147 LGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIGSARELF---DLMPKEMKNLISWNSMIS 203

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
                  G  I +     + E ++I  N+++D Y++ G +     LF  MP+R+VV+W T
Sbjct: 204 GYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGYVKHGRMEDAKDLFYVMPRRDVVTWAT 263

Query: 180 MIGGYAERGFCK-------------------------------EAVSVFQEMEKTKEAEP 208
           MI GYA+ GF                                 EA+ +F +MEK     P
Sbjct: 264 MIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNKYNMEALEIFSDMEKESHLSP 323

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           +E TLV VLSA + +  LS    +H YI  +    +   +G A+I+MY KCG +  A+ V
Sbjct: 324 DETTLVIVLSAIAQLGRLSKAMDMHLYIVEK-QFFLGGKLGVALIDMYSKCGSIQQAMLV 382

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F  +  K    W+ +I GLA++G G  A  +   +   ++ PDD+TF+ +++ACSH GLV
Sbjct: 383 FERIENKSIDHWNAMIGGLAIHGLGESAFDMLLEIERRSIKPDDITFVGILNACSHSGLV 442

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
            +GL+ F+ M   ++I P++QHY C+VD+  R+G +E A+  I EMP+E    +W   L 
Sbjct: 443 KEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPMEPNDVIWRTFLT 502

Query: 389 ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
           AC  H+  E  + + + L+ + G +  ++ L+SN +A    W+D  ++R  ++   L+K 
Sbjct: 503 ACSHHKEFETGEVVAKHLILQAGYNPSSYVLLSNMYASFGMWKDARRVRTMMKERELQKV 562

Query: 449 TGCSWIEVNPSI 460
            GCSWIE++  +
Sbjct: 563 PGCSWIELDGRV 574



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 154/360 (42%), Gaps = 56/360 (15%)

Query: 75  DVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIH 131
           D   W  +I   S     K A+  FC +    V  +  +L  VL ACS L   + G  IH
Sbjct: 60  DPFLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQIH 119

Query: 132 AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
               +    +++ L N ++  Y++CG L     +F +MP+R+ VS+ +MI GY + G   
Sbjct: 120 GFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIG 179

Query: 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG-N 250
            A  +F  M K  +       L++  S  S  +  S G  + S +    ++   +L+  N
Sbjct: 180 SARELFDLMPKEMK------NLISWNSMISGYAQTSDGVNIASKLFA--EMPEKDLISWN 231

Query: 251 AVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA---------------------- 288
           ++I+ YVK G +  A  +F ++  +D ++W+T+I G A                      
Sbjct: 232 SLIDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVA 291

Query: 289 ---------MNGCGRQALQLFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAM 338
                     N    +AL++FS M   + + PD+ T + ++SA +  G       L KAM
Sbjct: 292 YNSMMAGYVQNKYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGR------LSKAM 345

Query: 339 STVYEIVPQM-----QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
                IV +      +    ++DMY + G +++A   + E         W A++    IH
Sbjct: 346 DMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQQA-MLVFERIENKSIDHWNAMIGGLAIH 404


>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
 gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
          Length = 594

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 155/461 (33%), Positives = 256/461 (55%), Gaps = 42/461 (9%)

Query: 4   CPSSY---NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           C   Y   N +TFT    ACS  +   +  + HA +I++     +   NSLL FY  V +
Sbjct: 126 CDQRYVYPNDFTFTYVFSACSKFNGVFEGKQAHAQMIKFPFEFGVHSWNSLLDFYGKVGE 185

Query: 61  I-FSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACS 119
           +     ++F+ +  PDVVSW  +I+G  K G   EA  +F   D  P             
Sbjct: 186 VGIVVRRVFDKIEGPDVVSWNCLINGYVKSGDLDEARRLF---DEMP------------- 229

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
                               E +++    +L  Y   G L+    LF +MPKRN+VSW+ 
Sbjct: 230 --------------------ERDVVSWTIMLVGYADAGFLSEASCLFDEMPKRNLVSWSA 269

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           +I GY + G   +A+ +F+EM+  K  + +E  +  +LSAC+ + AL  G+++H YI  +
Sbjct: 270 LIKGYIQIGCYSKALELFKEMQVAK-VKMDEVIVTTLLSACARLGALDQGRWLHMYID-K 327

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
           + + V   +  A+I+MY KCG + +A +VF     K    WS++I GLAM+  G +A++L
Sbjct: 328 HGIKVDAHLSTALIDMYSKCGRIDMAWKVFQETGDKKVFVWSSMIGGLAMHSFGEKAIEL 387

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
           F+ MI   + P ++T+I +++AC+H GLVD GL +F  M    +  P+MQHY C+VD+ G
Sbjct: 388 FAKMIECGIEPSEITYINILAACTHSGLVDVGLQIFNRMVENQKPKPRMQHYGCIVDLLG 447

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFAL 419
           RAGLL +A   +  MP++A+ ++W ALL+AC++HRN E+ +++ + L+  +  +   + L
Sbjct: 448 RAGLLHDAFRVVETMPVKADPAIWRALLSACKLHRNVELGEQVGRILIKMEPQNDMNYVL 507

Query: 420 MSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            SN +A  +RW+ + K+R E++  G++K  GCS IE+N ++
Sbjct: 508 FSNVYAAVNRWDISGKLRREMKVRGMQKNPGCSSIELNGAV 548


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 149/461 (32%), Positives = 262/461 (56%), Gaps = 13/461 (2%)

Query: 12  TFTQALKACSLAHPHQKALEI--------HAHVIEYGHLHDIFIQNSLLHFYVTVKDIFS 63
           ++   +  C L   H++ALE+        H+ +++     D+F+   L+  Y     +  
Sbjct: 326 SWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLED 385

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 120
           A   FN +   D+++W  IISG S+     EA+ +F  +    +  N  TL ++L + + 
Sbjct: 386 ARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAG 445

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           L    + + +H  S+++   ++I + N+++D Y +C  +     +F +    ++VS+T+M
Sbjct: 446 LQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSM 505

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           I  YA+ G  +EA+ +F EM+   E +P+     ++L+AC+++SA   GK +H +I  +Y
Sbjct: 506 ITAYAQYGQGEEALKLFLEMQDM-ELKPDRFVCSSLLNACANLSAFEQGKQLHVHI-LKY 563

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
              +    GN+++NMY KCG +  A + F+ L  +  +SWS +I GLA +G GRQALQLF
Sbjct: 564 GFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLF 623

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
           + M+   V P+ +T ++++ AC+H GLV +  + F++M  ++   P  +HYAC++D+ GR
Sbjct: 624 NQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGR 683

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           AG + EA   + +MP EA  SVWGALL A RIH++ E+  R  + L   +    GT  L+
Sbjct: 684 AGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLL 743

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           +N +A A +WE+  ++R  +R   +KK+ G SWIEV   ++
Sbjct: 744 ANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVY 784



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 113/384 (29%), Positives = 185/384 (48%), Gaps = 40/384 (10%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           ++++ L  C      +  L+IHAH+ + G   D  I+N L++ Y   +    A ++ +  
Sbjct: 58  SYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDES 117

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLVSHKLGK 128
             PD+VSW+ +ISG ++ G    A+  F     + VK N  T  SVL ACS +   ++GK
Sbjct: 118 SEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGK 177

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H   + +  E ++ + N ++  Y +C        LF ++P+RNVVSW  +   Y +  
Sbjct: 178 QVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXD 237

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSNL 247
           FC EAV +F EM  +   +PNE +L ++++AC+ +   S GK +H Y I   YD      
Sbjct: 238 FCGEAVGLFYEMVLSG-IKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDW--DPF 294

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
             NA+++MY K GD+  AI VF  +   D +SW+ VI+G  ++    QAL+L   M    
Sbjct: 295 SANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQL 354

Query: 308 VFPDDVTFIALISACSHGGL--VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
                           H  L  +D    LF ++               +VDMY +  LLE
Sbjct: 355 ----------------HSSLMKMDMESDLFVSVG--------------LVDMYSKCDLLE 384

Query: 366 EAEAFIREMPIEAEWSVWGALLNA 389
           +A      +P E +   W A+++ 
Sbjct: 385 DARMAFNLLP-EKDLIAWNAIISG 407



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 157/303 (51%), Gaps = 8/303 (2%)

Query: 8   YNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           +N  T +  LK+ +         ++H   ++ G   DI++ NSL+  Y     +  A +I
Sbjct: 431 FNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERI 490

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSH 124
           F      D+VS+T++I+  ++ G  +EA+ +F     +++KP+     S+L+AC++L + 
Sbjct: 491 FEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAF 550

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           + GK +H H L+     +I   N++++ Y +CGS+   G  F ++ +R +VSW+ MIGG 
Sbjct: 551 EQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGL 610

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           A+ G  ++A+ +F +M K +   PN  TLV+VL AC+    ++  K     +   +    
Sbjct: 611 AQHGHGRQALQLFNQMLK-EGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKP 669

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS-WSTVISGLAMNG---CGRQALQLF 300
                  +I++  + G +  A+++ N + ++   S W  ++    ++     GR+A ++ 
Sbjct: 670 MQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEML 729

Query: 301 SLM 303
            ++
Sbjct: 730 FIL 732



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 170/382 (44%), Gaps = 55/382 (14%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +TF+  LKACS+    +   ++H  V+  G   D+F+ N+L+  Y    +   + ++F
Sbjct: 156 NEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLF 215

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           + +   +VVSW  + S   +  F  EA+ +F  +    +KPN  +L S+++AC+ L    
Sbjct: 216 DEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSS 275

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK IH + ++   + +    NA++D Y + G LA    +F K+ + ++VSW  +I G  
Sbjct: 276 RGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCV 335

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
                ++A+ +  +M++                             +HS +  + D+   
Sbjct: 336 LHEHHEQALELLGQMKRQ----------------------------LHSSL-MKMDMESD 366

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V   +++MY KC  +  A   FN+L  KD I+W+ +ISG +      +AL LF  M  
Sbjct: 367 LFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHK 426

Query: 306 NAVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
             +  +  T   ++ + +           HG  V  G       S +Y +         +
Sbjct: 427 EGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGF-----HSDIYVV-------NSL 474

Query: 355 VDMYGRAGLLEEAEAFIREMPI 376
           +D YG+   +E+AE    E  I
Sbjct: 475 IDSYGKCSHVEDAERIFEECTI 496



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 150/296 (50%), Gaps = 12/296 (4%)

Query: 106 PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYL 165
           P + +   +LS C +  S + G  IHAH  ++   ++  + N +++ Y +C        L
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKL 113

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
             +  + ++VSW+ +I GYA+ G    A+  F EM      + NE T  +VL ACS +  
Sbjct: 114 VDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLG-VKCNEFTFSSVLKACSIVKD 172

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285
           L  GK VH  +           V N ++ MY KC +   + ++F+ +  ++ +SW+ + S
Sbjct: 173 LRIGKQVHGVVVVS-GFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFS 231

Query: 286 G-LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVD--QGLILFKAMSTV- 341
             +  + CG +A+ LF  M+++ + P++ +  ++++AC+  GL D  +G I+   +  + 
Sbjct: 232 CYVQXDFCG-EAVGLFYEMVLSGIKPNEFSLSSMVNACT--GLRDSSRGKIIHGYLIKLG 288

Query: 342 YEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
           Y+  P   +   +VDMY + G L +A +   ++  + +   W A++  C +H + E
Sbjct: 289 YDWDPFSAN--ALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVLHEHHE 341


>gi|242077758|ref|XP_002448815.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
 gi|241939998|gb|EES13143.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
          Length = 913

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 148/468 (31%), Positives = 256/468 (54%), Gaps = 16/468 (3%)

Query: 6   SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAH 65
           ++ N YT + +LKAC +       + IH   +  G+     + +SL+  Y     I  A 
Sbjct: 315 AAPNEYTLSASLKACCVTEDMGAGVGIHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDAR 374

Query: 66  QIFNSV-VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---------KPNANTLVSVL 115
           ++F+   +   + +W  +ISG +  G  ++A+ +F  +           +P+  T  S+L
Sbjct: 375 RVFDCAGLGRGLATWNAMISGYAHAGHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLL 434

Query: 116 SACSSLVSHKLGKAIHAHSLRN--LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
            AC  L + + G  +HA    +     +N IL  A++D Y++CG L     +F ++ ++N
Sbjct: 435 KACGGLGAPREGAQVHAAMAASGFSTASNAILAGALVDMYVKCGRLPVAMQVFERLERKN 494

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
            + WTT++ G+A+ G   EA+ +F+   ++  A  +   L +++   +  + +  G+ VH
Sbjct: 495 AIQWTTVVVGHAQEGQVMEALELFRRFWRSG-ARADAHVLSSIVGVLADFALVEQGRQVH 553

Query: 234 SY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
            Y + +     VS   GN++++MY+KCG    A ++F  +  ++ +SW+T+I+GL  +G 
Sbjct: 554 CYGVKSPAGTDVS--AGNSIVDMYLKCGLPDEAERMFREIPARNVVSWTTMINGLGKHGL 611

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
           GR+A+ +F  M    V PD+VT++AL+SACSH GLVD+    F  +     + P+ +HYA
Sbjct: 612 GREAVAMFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYA 671

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           C+VD+ GRAG L EA   IR MP+E    VW  LL+ACR+H++  +       L+   G 
Sbjct: 672 CMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAIDGD 731

Query: 413 SVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +   +  +SN FA A  W + +K+RD +RR GLKK+ GCSW+E+   +
Sbjct: 732 NPVNYVTLSNVFAEAGAWRECHKVRDAMRRRGLKKQGGCSWVEIGKEV 779



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/422 (26%), Positives = 196/422 (46%), Gaps = 23/422 (5%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           L+A +     +  +++H  + + G   D  + N+L+  Y    ++  A ++F  +   +V
Sbjct: 224 LRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEVFGGMRDRNV 283

Query: 77  VSWTTIISGLSKCGFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHA 132
           VSWT ++ G  + G     +    +M    +  PN  TL + L AC        G  IH 
Sbjct: 284 VSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKACCVTEDMGAGVGIHG 343

Query: 133 HSLRNLNENNIILDNAILDFYIRCGSLASCGYLF-VKMPKRNVVSWTTMIGGYAERGFCK 191
             +R   E + ++ ++++  Y + G +     +F      R + +W  MI GYA  G  +
Sbjct: 344 LCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAMISGYAHAGHGR 403

Query: 192 EAVSVFQEMEKT-----KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
           +A+ VF+EM +       + +P+E T  ++L AC  + A   G  VH+ ++     + SN
Sbjct: 404 DALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQVHAAMAASGFSTASN 463

Query: 247 -LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
            ++  A+++MYVKCG + +A+QVF  L  K+ I W+TV+ G A  G   +AL+LF     
Sbjct: 464 AILAGALVDMYVKCGRLPVAMQVFERLERKNAIQWTTVVVGHAQEGQVMEALELFRRFWR 523

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLIL--FKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
           +    D     +++   +   LV+QG  +  +   S     V        +VDMY + GL
Sbjct: 524 SGARADAHVLSSIVGVLADFALVEQGRQVHCYGVKSPAGTDVSAGNS---IVDMYLKCGL 580

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDRIRQDLVNKKGVSVGTFAL 419
            +EAE   RE+P     S W  ++N    H        MF+ +R   V    V+    AL
Sbjct: 581 PDEAERMFREIPARNVVS-WTTMINGLGKHGLGREAVAMFEEMRAGGVEPDEVTY--LAL 637

Query: 420 MS 421
           +S
Sbjct: 638 LS 639



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 123/265 (46%), Gaps = 9/265 (3%)

Query: 111 LVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP 170
           +  +L A +   S + G  +H    +    ++ +L N ++D Y +CG L   G +F  M 
Sbjct: 220 IADLLRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEVFGGMR 279

Query: 171 KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGK 230
            RNVVSWT ++ G+ + G     + +  EM    EA PNE TL   L AC     +  G 
Sbjct: 280 DRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKACCVTEDMGAGV 339

Query: 231 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI-SWSTVISGLAM 289
            +H  +  R       +V ++++ +Y K G +G A +VF+       + +W+ +ISG A 
Sbjct: 340 GIHG-LCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAMISGYAH 398

Query: 290 NGCGRQALQLFSLMIINAVF------PDDVTFIALISACSHGGLVDQGLILFKAM-STVY 342
            G GR AL +F  M            PD+ TF +L+ AC   G   +G  +  AM ++ +
Sbjct: 399 AGHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQVHAAMAASGF 458

Query: 343 EIVPQMQHYACVVDMYGRAGLLEEA 367
                      +VDMY + G L  A
Sbjct: 459 STASNAILAGALVDMYVKCGRLPVA 483


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 149/466 (31%), Positives = 255/466 (54%), Gaps = 41/466 (8%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           +HA ++  G   D ++ N +L F     +   +H+IF+    P++  + T+I GL     
Sbjct: 29  VHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDS 88

Query: 92  HKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148
            +E+I+++  +    + P++ T   +L AC+ L+  KLG  +H   ++   E++  ++ +
Sbjct: 89  FQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAFVNTS 148

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQE--------M 200
           ++  Y +CG + +   +F  +P++NV +WT +I GY   G C+EA+ +F+         +
Sbjct: 149 LVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGML 208

Query: 201 EK-----------------TKEA------------EPNEATLVNVLSACSSISALSFGKY 231
           EK                  KEA             P+   +V VL AC+ + AL  G +
Sbjct: 209 EKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNW 268

Query: 232 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNG 291
             S +  R +   + ++G A+I+MY KCG +  A +VF  +  KD + W+  ISGLAM+G
Sbjct: 269 A-SNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSG 327

Query: 292 CGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY 351
             + A  LF  M  + + PD  TF+ L+ AC+H GLVD+G   F +M  V+ + P+++HY
Sbjct: 328 HVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHY 387

Query: 352 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKG 411
            C+VD+ GRAG L+EA   ++ MP+EA   VWGALL  CR+HR+ ++ + + + L+  + 
Sbjct: 388 GCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLIALEP 447

Query: 412 VSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            + G + L+SN ++ + +WED  KIR  +   G+KK  G SWIEV+
Sbjct: 448 SNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVD 493



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 145/324 (44%), Gaps = 47/324 (14%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S + +TF   LKAC+     +  +++H  V++ G   D F+  SL+  Y     I +A +
Sbjct: 105 SPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFK 164

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGI--------------------- 102
           +F+ +   +V +WT IISG    G  +EAIDMF   C +                     
Sbjct: 165 VFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYAS 224

Query: 103 -----------------DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNE--NNI 143
                              +P+   +V VL AC+ L + +LG    A +L + NE   N 
Sbjct: 225 NGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNW--ASNLMDRNEFLGNP 282

Query: 144 ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
           +L  A++D Y +CG + S   +F  M K+++V W   I G A  G  K A  +F +MEK+
Sbjct: 283 VLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKS 342

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
              EP+  T V +L AC+    +  G+   + +   + L+        ++++  + G + 
Sbjct: 343 G-IEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDLLGRAGFLD 401

Query: 264 IAIQ-VFNMLAYKDKISWSTVISG 286
            A Q V +M    + I W  ++ G
Sbjct: 402 EAHQLVKSMPMEANAIVWGALLGG 425



 Score = 45.4 bits (106), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 78/162 (48%), Gaps = 7/162 (4%)

Query: 230 KYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAM 289
           K+VH+ +  R  L   + + N V+      G+   + ++F+     +   ++T+I GL +
Sbjct: 27  KHVHAAL-LRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVL 85

Query: 290 NGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQ 349
           N   +++++++  M    + PD  TF  L+ AC+   L+D  L + K    V +   +  
Sbjct: 86  NDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACAR--LLDSKLGI-KLHGLVVKAGCESD 142

Query: 350 HY--ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
            +    +V +YG+ G ++ A     ++P E   + W A+++ 
Sbjct: 143 AFVNTSLVSLYGKCGFIDNAFKVFDDIP-EKNVAAWTAIISG 183


>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 161/456 (35%), Positives = 257/456 (56%), Gaps = 12/456 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD--IFSAHQ 66
           +++T+   LKACS          IHAHV + G   DIF+ NSL+  Y    +  +  A  
Sbjct: 119 DNFTYPFLLKACSGPSSLPLVRMIHAHVEKIGFYGDIFVPNSLIDSYSRCGNAGLDGAMS 178

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKL 126
           +F ++   DVV+W ++I GL +CG  + A  +F   D  P+ + +VS  +        K 
Sbjct: 179 LFLAMEERDVVTWNSMIGGLVRCGELQGACKLF---DEMPDRD-MVSWNTMLDGYA--KA 232

Query: 127 GKAIHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           G+   A  L   +   NI+  + ++  Y + G +     LF + P +NVV WTT+I GYA
Sbjct: 233 GEMDTAFELFERMPWRNIVSWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYA 292

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           E+G  +EA  ++ +ME+     P++  L+++L+AC+    L  GK +H+ +  R+     
Sbjct: 293 EKGLAREATELYGKMEEAG-MRPDDGFLLSILAACAESGMLGLGKRIHASMR-RWRFRCG 350

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFN-MLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
             V NA I+MY KCG +  A  VF+ M+A KD +SW+++I G AM+G G +AL+LFS M+
Sbjct: 351 AKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSWMV 410

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
                PD  TF+ L+ AC+H GLV++G   F +M  VY IVPQ++HY C++D+ GR G L
Sbjct: 411 QEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHL 470

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           +EA   +R MP+E    + G LLNACR+H + ++   + + L   +    G ++L+SN +
Sbjct: 471 KEAFMLLRSMPMEPNAIILGTLLNACRMHNDVDLARAVCEQLFKLEPSDPGNYSLLSNIY 530

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           A A  W +   +R +++  G +K +G S IEV   +
Sbjct: 531 AQAGDWMNVANVRLQMKNTGGEKPSGASSIEVEEEV 566



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 171/373 (45%), Gaps = 17/373 (4%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           +IHA V++     D+F+   L+  +   + + SA  +FN V  P+V  + +II   +   
Sbjct: 39  QIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNS 98

Query: 91  FHKE-AIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
            H+    + F  +      P+  T   +L ACS   S  L + IHAH  +     +I + 
Sbjct: 99  SHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSGPSSLPLVRMIHAHVEKIGFYGDIFVP 158

Query: 147 NAILDFYIRCGSLASCGY--LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           N+++D Y RCG+    G   LF+ M +R+VV+W +MIGG    G  + A  +F EM    
Sbjct: 159 NSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQGACKLFDEMPDRD 218

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
               N      +L   +    +     +   +  R  +S S +V       Y K GD+ +
Sbjct: 219 MVSWN-----TMLDGYAKAGEMDTAFELFERMPWRNIVSWSTMVCG-----YSKGGDMDM 268

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
           A  +F+    K+ + W+T+I+G A  G  R+A +L+  M    + PDD   +++++AC+ 
Sbjct: 269 ARMLFDRCPVKNVVLWTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILAACAE 328

Query: 325 GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 384
            G++  G  +  +M   +      +     +DMY + G L+ A      M  + +   W 
Sbjct: 329 SGMLGLGKRIHASMRR-WRFRCGAKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWN 387

Query: 385 ALLNACRIHRNDE 397
           +++    +H + E
Sbjct: 388 SMIQGFAMHGHGE 400


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 142/435 (32%), Positives = 248/435 (57%), Gaps = 6/435 (1%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           E+H + ++   +++  + N+ +  Y     +  A ++F+ +    V SW  +I G ++  
Sbjct: 166 ELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSN 225

Query: 91  FHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
             + ++D    + +    P++ T+ S+LSACS L S +LGK +H   +RN  E ++ +  
Sbjct: 226 DPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYL 285

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           ++L  YI CG L +   LF  M  +++VSW T+I GY + GF   A+ VF++M      +
Sbjct: 286 SVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQM-VLYGIQ 344

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
               +++ V  ACS + +L  G+  H+Y + ++ L     +  ++I+MY K G +  + +
Sbjct: 345 LCGISMMPVFGACSLLPSLRLGREAHAY-ALKHLLEDDAFIACSLIDMYAKNGSITQSSK 403

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           VFN L  K   SW+ +I G  ++G  ++A++LF  M      PDD+TF+ +++AC+H GL
Sbjct: 404 VFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGL 463

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFI-REMPIEAEWSVWGAL 386
           + +GL     M + + + P ++HYACV+DM GRAG L++A   +  EM  EA+  +W +L
Sbjct: 464 IHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSL 523

Query: 387 LNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446
           L++CRIH+N EM +++   L   +      + L+SN +AG  +WED  K+R  +  M L+
Sbjct: 524 LSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLR 583

Query: 447 KKTGCSWIEVNPSIF 461
           K  GCSWIE+N  +F
Sbjct: 584 KDAGCSWIELNRKVF 598



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 133/257 (51%), Gaps = 9/257 (3%)

Query: 75  DVVSWTTIISGLSKCGFHKEAIDMFCGIDVK-------PNANTLVSVLSACSSLVSHKLG 127
           + VSW ++I   S  GF +E+  +   +  +       P+  TLV+VL  C+      LG
Sbjct: 2   NFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLG 61

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           K +H  +++   +  ++L+NA++D Y +CG + +   +F     +NVVSW TM+GG++  
Sbjct: 62  KGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAE 121

Query: 188 GFCKEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
           G       V ++M    ++ + +E T++N +  C   S L   K +H Y S + +   + 
Sbjct: 122 GDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCY-SLKQEFVYNE 180

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
           LV NA +  Y KCG +  A +VF+ +  K   SW+ +I G A +   R +L     M I+
Sbjct: 181 LVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKIS 240

Query: 307 AVFPDDVTFIALISACS 323
            + PD  T  +L+SACS
Sbjct: 241 GLLPDSFTVCSLLSACS 257



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 143/289 (49%), Gaps = 20/289 (6%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +T    L ACS     +   E+H  +I      D+F+  S+L  Y+   ++ +   +F
Sbjct: 245 DSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALF 304

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF----------CGIDVKPNANTLVSVLSAC 118
           +++    +VSW T+I+G  + GF   A+ +F          CGI + P       V  AC
Sbjct: 305 DAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMP-------VFGAC 357

Query: 119 SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWT 178
           S L S +LG+  HA++L++L E++  +  +++D Y + GS+     +F  + +++  SW 
Sbjct: 358 SLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWN 417

Query: 179 TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST 238
            MI GY   G  KEA+ +F+EM++T    P++ T + VL+AC+    +  G      + +
Sbjct: 418 AMIMGYGIHGLAKEAIKLFEEMQRTGH-NPDDLTFLGVLTACNHSGLIHEGLRYLDQMKS 476

Query: 239 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVF--NMLAYKDKISWSTVIS 285
            + L  +      VI+M  + G +  A++V    M    D   W +++S
Sbjct: 477 SFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLS 525



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 181/389 (46%), Gaps = 13/389 (3%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L  C+          +H   ++     ++ + N+L+  Y     I +A  IF   
Sbjct: 44  TLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMN 103

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLVSHKL 126
              +VVSW T++ G S  G      D+       G DVK +  T+++ +  C        
Sbjct: 104 NNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPS 163

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
            K +H +SL+     N ++ NA +  Y +CGSL+    +F  +  + V SW  +IGG+A+
Sbjct: 164 LKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQ 223

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
               + ++    +M K     P+  T+ ++LSACS + +L  GK VH +I  R  L    
Sbjct: 224 SNDPRLSLDAHLQM-KISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFI-IRNWLERDL 281

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            V  +V+++Y+ CG++     +F+ +  K  +SW+TVI+G   NG   +AL +F  M++ 
Sbjct: 282 FVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLY 341

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMS-TVYEIVPQMQHYAC-VVDMYGRAGLL 364
            +    ++ + +  ACS   L+    +  +A +  +  ++      AC ++DMY + G +
Sbjct: 342 GIQLCGISMMPVFGACS---LLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSI 398

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIH 393
            ++      +  E   + W A++    IH
Sbjct: 399 TQSSKVFNGLK-EKSTASWNAMIMGYGIH 426



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 82/158 (51%), Gaps = 6/158 (3%)

Query: 172 RNVVSWTTMIGGYAERGFCKEAVSVFQE-MEKTKEAE--PNEATLVNVLSACSSISALSF 228
           RN VSW +MI  +++ GF +E+  +  E ME+  +    P+ ATLV VL  C+    +  
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
           GK VH + + +  L    ++ NA+++MY KCG +  A  +F M   K+ +SW+T++ G +
Sbjct: 61  GKGVHGW-AVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFS 119

Query: 289 MNGCGRQALQLFSLMIINA--VFPDDVTFIALISACSH 324
             G       +   M+     V  D+VT +  +  C H
Sbjct: 120 AEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFH 157


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 142/435 (32%), Positives = 248/435 (57%), Gaps = 6/435 (1%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           E+H + ++   +++  + N+ +  Y     +  A ++F+ +    V SW  +I G ++  
Sbjct: 416 ELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSN 475

Query: 91  FHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
             + ++D    + +    P++ T+ S+LSACS L S +LGK +H   +RN  E ++ +  
Sbjct: 476 DPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYL 535

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           ++L  YI CG L +   LF  M  +++VSW T+I GY + GF   A+ VF++M      +
Sbjct: 536 SVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQM-VLYGIQ 594

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
               +++ V  ACS + +L  G+  H+Y + ++ L     +  ++I+MY K G +  + +
Sbjct: 595 LCGISMMPVFGACSLLPSLRLGREAHAY-ALKHLLEDDAFIACSLIDMYAKNGSITQSSK 653

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           VFN L  K   SW+ +I G  ++G  ++A++LF  M      PDD+TF+ +++AC+H GL
Sbjct: 654 VFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGL 713

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFI-REMPIEAEWSVWGAL 386
           + +GL     M + + + P ++HYACV+DM GRAG L++A   +  EM  EA+  +W +L
Sbjct: 714 IHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSL 773

Query: 387 LNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446
           L++CRIH+N EM +++   L   +      + L+SN +AG  +WED  K+R  +  M L+
Sbjct: 774 LSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLR 833

Query: 447 KKTGCSWIEVNPSIF 461
           K  GCSWIE+N  +F
Sbjct: 834 KDAGCSWIELNRKVF 848



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 97/323 (30%), Positives = 169/323 (52%), Gaps = 9/323 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +H+T+   +KAC+        L +H  V++ G + D+F+ N+L+ FY T   +  A Q+F
Sbjct: 186 DHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLF 245

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI-------DVKPNANTLVSVLSACSSL 121
           + +   ++VSW ++I   S  GF +E+  +   +          P+  TLV+VL  C+  
Sbjct: 246 DIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCARE 305

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
               LGK +H  +++   +  ++L+NA++D Y +CG + +   +F     +NVVSW TM+
Sbjct: 306 REIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMV 365

Query: 182 GGYAERGFCKEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           GG++  G       V ++M    ++ + +E T++N +  C   S L   K +H Y S + 
Sbjct: 366 GGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCY-SLKQ 424

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
           +   + LV NA +  Y KCG +  A +VF+ +  K   SW+ +I G A +   R +L   
Sbjct: 425 EFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAH 484

Query: 301 SLMIINAVFPDDVTFIALISACS 323
             M I+ + PD  T  +L+SACS
Sbjct: 485 LQMKISGLLPDSFTVCSLLSACS 507



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 143/289 (49%), Gaps = 20/289 (6%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +T    L ACS     +   E+H  +I      D+F+  S+L  Y+   ++ +   +F
Sbjct: 495 DSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALF 554

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF----------CGIDVKPNANTLVSVLSAC 118
           +++    +VSW T+I+G  + GF   A+ +F          CGI + P       V  AC
Sbjct: 555 DAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMP-------VFGAC 607

Query: 119 SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWT 178
           S L S +LG+  HA++L++L E++  +  +++D Y + GS+     +F  + +++  SW 
Sbjct: 608 SLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWN 667

Query: 179 TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST 238
            MI GY   G  KEA+ +F+EM++T    P++ T + VL+AC+    +  G      + +
Sbjct: 668 AMIMGYGIHGLAKEAIKLFEEMQRTGH-NPDDLTFLGVLTACNHSGLIHEGLRYLDQMKS 726

Query: 239 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVF--NMLAYKDKISWSTVIS 285
            + L  +      VI+M  + G +  A++V    M    D   W +++S
Sbjct: 727 SFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLS 775



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 135/267 (50%), Gaps = 10/267 (3%)

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEA----IDMFCGIDVKPNANTLVSVLSACSSLV 122
           +F+++   ++  W  +IS  S+   + E     I+M    D+ P+  T   V+ AC+ + 
Sbjct: 142 VFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMS 201

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
              +G A+H   ++     ++ + NA++ FY   G +     LF  MP+RN+VSW +MI 
Sbjct: 202 DVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIR 261

Query: 183 GYAERGFCKEAVSVFQE-MEKTKEAE--PNEATLVNVLSACSSISALSFGKYVHSYISTR 239
            +++ GF +E+  +  E ME+  +    P+ ATLV VL  C+    +  GK VH + + +
Sbjct: 262 VFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGW-AVK 320

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
             L    ++ NA+++MY KCG +  A  +F M   K+ +SW+T++ G +  G       +
Sbjct: 321 LRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDV 380

Query: 300 FSLMIINA--VFPDDVTFIALISACSH 324
              M+     V  D+VT +  +  C H
Sbjct: 381 LRQMLAGGEDVKADEVTILNAVPVCFH 407



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 138/316 (43%), Gaps = 13/316 (4%)

Query: 114 VLSACSSLVSHKLGKAIH---AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP 170
           +L A       ++G+ IH   + S R  N++  +L   I+  Y  CGS     ++F  + 
Sbjct: 90  LLQASGKRKDIEMGRKIHQLVSGSTRLRNDD--VLCTRIITMYAMCGSPDDSRFVFDALR 147

Query: 171 KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGK 230
            +N+  W  +I  Y+      E +  F EM  T +  P+  T   V+ AC+ +S +  G 
Sbjct: 148 SKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGL 207

Query: 231 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMN 290
            VH  +  +  L     VGNA+++ Y   G V  A+Q+F+++  ++ +SW+++I   + N
Sbjct: 208 AVHGLV-VKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDN 266

Query: 291 GCGRQALQLFSLMI----INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 346
           G   ++  L   M+      A  PD  T + ++  C+    +  G  +    +    +  
Sbjct: 267 GFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGV-HGWAVKLRLDK 325

Query: 347 QMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE-MFDRIRQD 405
           ++     ++DMY + G +  A+  I +M        W  ++       +    FD +RQ 
Sbjct: 326 ELVLNNALMDMYSKCGCITNAQ-MIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQM 384

Query: 406 LVNKKGVSVGTFALMS 421
           L   + V      +++
Sbjct: 385 LAGGEDVKADEVTILN 400


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 141/420 (33%), Positives = 243/420 (57%), Gaps = 6/420 (1%)

Query: 45  IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV 104
           + +  +LL  Y     +  A ++F+++   + V+W+ +I G   C    +A  +F  +  
Sbjct: 273 VLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLA 332

Query: 105 KP----NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLA 160
           +     +  ++ S L AC+SL   ++G+ +HA   ++    ++   N++L  Y + G + 
Sbjct: 333 QGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLID 392

Query: 161 SCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
               LF +M  ++ VS++ ++ GY + G  +EA  VF++M+     EP+ AT+V+++ AC
Sbjct: 393 QAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQAC-NVEPDAATMVSLIPAC 451

Query: 221 SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
           S ++AL  G+  H  +  R  L+    + NA+I+MY KCG + ++ QVFNM+  +D +SW
Sbjct: 452 SHLAALQHGRCSHGSVIIR-GLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSW 510

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340
           +T+I+G  ++G G++A  LF  M      PD VTFI L+SACSH GLV +G   F  M  
Sbjct: 511 NTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGH 570

Query: 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFD 400
            Y + P+M+HY C+VD+  R G L+EA  FI+ MP+ A+  VW ALL ACR+++N ++  
Sbjct: 571 GYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGK 630

Query: 401 RIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           ++ + +        G F L+SN ++ A R+++  ++R   +  G KK  GCSWIE+N S+
Sbjct: 631 KVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSL 690



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/405 (28%), Positives = 201/405 (49%), Gaps = 28/405 (6%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N+YTF  ALKACS    H     IH H I  G   D+F+  +LL  YV    +  A  IF
Sbjct: 124 NNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIF 183

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID-----VKPNANTLVSVLSACSSLVS 123
            ++   D+V+W  +++G +  G +  A+     +      ++PNA+TLV++L   +   +
Sbjct: 184 ATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGA 243

Query: 124 HKLGKAIHAHSLR---NLNENN-------IILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
              G ++HA+ +R   + N N+       ++L  A+LD Y +CGSL     +F  MP RN
Sbjct: 244 LAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARN 303

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
            V+W+ +IGG+       +A  +F+ M        +  ++ + L AC+S+  L  G+ +H
Sbjct: 304 EVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLH 363

Query: 234 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG 293
           + ++ +  +      GN++++MY K G +  AI +F+ +A KD +S+S ++SG   NG  
Sbjct: 364 ALLA-KSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRA 422

Query: 294 RQALQLFSLMIINAVFPDDVTFIALISACSH-----GGLVDQGLILFKAMSTVYEIVPQM 348
            +A  +F  M    V PD  T ++LI ACSH      G    G ++ + +++   I   +
Sbjct: 423 EEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNAL 482

Query: 349 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
                 +DMY + G ++ +      MP   +   W  ++    IH
Sbjct: 483 ------IDMYAKCGRIDLSRQVFNMMP-SRDIVSWNTMIAGYGIH 520



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 161/330 (48%), Gaps = 17/330 (5%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDM-----FCGIDVKPNANTLVSVLSAC 118
           AH +F+ +  PDV ++  +I   S       A  +          V PN  T    L AC
Sbjct: 76  AHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKAC 135

Query: 119 SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWT 178
           S+L  H  G+AIH H++    + ++ +  A+LD Y++C  L    ++F  MP R++V+W 
Sbjct: 136 SALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWN 195

Query: 179 TMIGGYAERGFCKEAVSVFQEME-KTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI- 236
            M+ GYA  G    AV+    M+ +     PN +TLV +L   +   AL+ G  VH+Y  
Sbjct: 196 AMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCI 255

Query: 237 --------STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
                   +++  L+   L+G A+++MY KCG +  A +VF+ +  +++++WS +I G  
Sbjct: 256 RACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFV 315

Query: 289 MNGCGRQALQLFSLMIINAV-FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 347
           +     QA  LF  M+   + F    +  + + AC+    +  G  L  A+     +   
Sbjct: 316 LCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQL-HALLAKSGVHAD 374

Query: 348 MQHYACVVDMYGRAGLLEEAEAFIREMPIE 377
           +     ++ MY +AGL+++A A   EM ++
Sbjct: 375 LTAGNSLLSMYAKAGLIDQAIALFDEMAVK 404



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 94/231 (40%), Gaps = 18/231 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M +C    +  T    + ACS     Q     H  VI  G   +  I N+L+  Y     
Sbjct: 432 MQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGR 491

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           I  + Q+FN +   D+VSW T+I+G    G  KEA  +F  ++     P+  T + +LSA
Sbjct: 492 IDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSA 551

Query: 118 C--SSLV---SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKR 172
           C  S LV    H      H + L    E+ I +    +D   R G L         MP R
Sbjct: 552 CSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICM----VDLLSRGGFLDEAYEFIQSMPLR 607

Query: 173 -NVVSWTTMIGG---YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
            +V  W  ++G    Y      K+   + QE+    E   N   L N+ SA
Sbjct: 608 ADVRVWVALLGACRVYKNIDLGKKVSRMIQEL--GPEGTGNFVLLSNIYSA 656


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 148/448 (33%), Positives = 252/448 (56%), Gaps = 8/448 (1%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           + AC+ +   + A +IHAH+       D F+ NSL+H Y   + +  A  +F+ +   D+
Sbjct: 58  ITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMRRKDM 117

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAH 133
           VSWT++I+G ++     EAI +  G+     KPN  T  S+L A  +      G+ IHA 
Sbjct: 118 VSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQIHAL 177

Query: 134 SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
           +++     ++ + +A+LD Y RCG +     +F K+  +N VSW  +I G+A +G  + A
Sbjct: 178 AVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGESA 237

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSNLVGNAV 252
           +  F EM +    E    T  +V S+ + + AL  GK+VH++ I +R  L+    VGN +
Sbjct: 238 LMTFAEMLRNG-FEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTA--FVGNTL 294

Query: 253 INMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD 312
           ++MY K G +  A +VF+ +  KD ++W+++++  A  G G++A+  F  M  + V+ + 
Sbjct: 295 LDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQ 354

Query: 313 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIR 372
           +TF+ +++ACSHGGLV +G   F+ M   Y++ P++ HY  VV + GRAGLL  A  FI 
Sbjct: 355 ITFLCILTACSHGGLVKEGKRYFEMMKE-YDLEPEIDHYVTVVALLGRAGLLNYALVFIF 413

Query: 373 EMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWED 432
           +MP+E   +VWGALL ACR+H+N ++       +        G   L+ N +A   +W+ 
Sbjct: 414 KMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDA 473

Query: 433 TNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
             ++R  ++  G+KK+  CSW+E+  S+
Sbjct: 474 AARVRMMMKTTGVKKEPACSWVEMENSV 501



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 150/298 (50%), Gaps = 12/298 (4%)

Query: 96  IDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIR 155
           +D+    ++ P      S ++AC+   + +  + IHAH   +    +  LDN+++  Y +
Sbjct: 39  LDLLDAGELAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCK 98

Query: 156 CGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVN 215
           C S+     +F +M ++++VSWT++I GYA+     EA+ +   M K +  +PN  T  +
Sbjct: 99  CRSVLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGR-FKPNGFTFAS 157

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           +L A  + +    G+ +H+ ++ +        VG+A+++MY +CG + +A  VF+ L  K
Sbjct: 158 LLKAAGAYADSGTGRQIHA-LAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSK 216

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI-- 333
           + +SW+ +ISG A  G G  AL  F+ M+ N       T+ ++ S+ +  G ++QG    
Sbjct: 217 NGVSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVH 276

Query: 334 --LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
             + K+   +   V        ++DMY ++G + +A      +    +   W ++L A
Sbjct: 277 AHVIKSRQKLTAFVGN-----TLLDMYAKSGSMIDARKVFDRVD-NKDLVTWNSMLTA 328



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 139/294 (47%), Gaps = 6/294 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML      N +TF   LKA           +IHA  ++ G   D+++ ++LL  Y     
Sbjct: 143 MLKGRFKPNGFTFASLLKAAGAYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGK 202

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           +  A  +F+ +   + VSW  +ISG ++ G  + A+  F  +     +    T  SV S+
Sbjct: 203 MDMATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSS 262

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
            + L + + GK +HAH +++  +    + N +LD Y + GS+     +F ++  +++V+W
Sbjct: 263 IARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTW 322

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
            +M+  +A+ G  KEAVS F+EM K+     N+ T + +L+ACS    +  GK     + 
Sbjct: 323 NSMLTAFAQYGLGKEAVSHFEEMRKSG-VYLNQITFLCILTACSHGGLVKEGKRYFEMMK 381

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIA-IQVFNMLAYKDKISWSTVISGLAMN 290
             YDL         V+ +  + G +  A + +F M        W  +++   M+
Sbjct: 382 -EYDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMH 434


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 158/487 (32%), Positives = 252/487 (51%), Gaps = 36/487 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    + AC+     Q   ++   + E     +  + N+L+  Y+    I  A +IF
Sbjct: 239 NSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIF 298

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           +  V  ++V + TI+S   + G  +E + +   +     +P+  T++S +SACS L    
Sbjct: 299 DECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVS 358

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGS--------------------------- 158
            GK  H + LRN  E    + NAI++ Y++CG                            
Sbjct: 359 CGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFV 418

Query: 159 ----LASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
               + S   +F  MP  ++VSW TMIG   +    KEA+ +F+ M+ ++    ++ T+V
Sbjct: 419 RNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQ-SEGITADKVTMV 477

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
            V SAC  + AL   K++H YI  + D+     +G A+++M+ +CGD   A+QVFN +  
Sbjct: 478 GVASACGYLGALDLAKWIHGYIKKK-DIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVK 536

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           +D  +W+  I  +AM G G  A++LF  M+   + PD V F+AL++A SHGGLV+QG  +
Sbjct: 537 RDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHI 596

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F++M  +Y I PQ  HY C+VD+ GRAGLL EA + I  M +E    +WG+LL ACR+H+
Sbjct: 597 FRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHK 656

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           N ++     + +        G   L+SN +A A RW+D  K+R  ++  G  K  G S I
Sbjct: 657 NVDIAAYAAERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSI 716

Query: 455 EVNPSIF 461
           E+N  IF
Sbjct: 717 EINGKIF 723



 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 128/447 (28%), Positives = 229/447 (51%), Gaps = 52/447 (11%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +++TF   L AC+ +    +  ++H  +++ G   D+F++NSL+HFY    +I    ++F
Sbjct: 138 DNFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVF 197

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHK 125
           + +   +VVSWT++I G +K G +KEA+ +F     + ++PN+ T+V V+SAC+ L   +
Sbjct: 198 DKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQ 257

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG+ +         E N ++ NA++D Y++CG++     +F +   +N+V + T++  Y 
Sbjct: 258 LGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYV 317

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
            +G  +E ++V  EM K     P+  T+++ +SACS +  +S GK+ H Y+  R  L   
Sbjct: 318 RQGLAREVLAVLGEMLK-HGPRPDRITMLSAVSACSELDDVSCGKWCHGYV-LRNGLEGW 375

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNG-------------- 291
           + V NA+INMY+KCG   +A +VF+ +  K ++SW+++I+G   NG              
Sbjct: 376 DNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPD 435

Query: 292 -----------------CGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVD----- 329
                              ++A++LF +M    +  D VT + + SAC + G +D     
Sbjct: 436 SDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWI 495

Query: 330 QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
            G I  K      +I   M     +VDM+ R G  + A     +M ++ + S W A + A
Sbjct: 496 HGYIKKK------DIHFDMHLGTALVDMFARCGDPQSAMQVFNKM-VKRDVSAWTAAIGA 548

Query: 390 CRIHRND----EMFDRIRQDLVNKKGV 412
             +  N     E+FD + Q  +   GV
Sbjct: 549 MAMEGNGTGAIELFDEMLQQGIKPDGV 575



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 119/417 (28%), Positives = 202/417 (48%), Gaps = 45/417 (10%)

Query: 38  EYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAID 97
           E G    +      L  ++    I   H +F+S           +I G S CG   +AI 
Sbjct: 77  EMGTFESLEYAQKALELFIEDNGIMGTHYMFSS-----------LIRGFSACGLGYKAIV 125

Query: 98  MF----CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFY 153
           +F    C +   P+  T   VLSAC+   +   G  +H   ++   E ++ ++N+++ FY
Sbjct: 126 VFRQLMC-MGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFY 184

Query: 154 IRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATL 213
             CG +     +F KM +RNVVSWT++IGGYA+RG  KEAVS+F EM +     PN  T+
Sbjct: 185 GECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVG-IRPNSVTM 243

Query: 214 VNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 273
           V V+SAC+ +  L  G+ V + I    +L V+ L+ NA+++MY+KCG +  A ++F+   
Sbjct: 244 VGVISACAKLQDLQLGEQVCTCIG-ELELEVNALMVNALVDMYMKCGAIDKARKIFDECV 302

Query: 274 YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS---------- 323
            K+ + ++T++S     G  R+ L +   M+ +   PD +T ++ +SACS          
Sbjct: 303 DKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKW 362

Query: 324 -HGGLVDQGLILFKAMSTVYEIVPQM------QHYAC-VVDMY---GRAGLLEEAEAFIR 372
            HG ++  GL   +    V   +  M      Q  AC V D      R         F+R
Sbjct: 363 CHGYVLRNGL---EGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVR 419

Query: 373 EMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADR 429
              +E+ W ++ A+ ++  +  N  M   + Q+ + K+ + +  F +M +    AD+
Sbjct: 420 NGDMESAWKIFSAMPDSDLVSWN-TMIGALVQESMFKEAIEL--FRVMQSEGITADK 473


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 153/456 (33%), Positives = 267/456 (58%), Gaps = 7/456 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +T+   L+ C+         +IH HVI+ G   ++++ + L+  Y     +  A +I 
Sbjct: 462 NQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRIL 521

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   DVVSWT +I+G  +     EA+ +F  ++   ++ +     S +SAC+ + + +
Sbjct: 522 RRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALR 581

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ IHA S       ++ ++NA++  Y RCG +      F K+  +N +SW +++ G A
Sbjct: 582 QGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLA 641

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSV 244
           + G+ +EA+ VF  M +T EAE N  T  + +SA +S++ +  G+ +HS +  T YD   
Sbjct: 642 QSGYFEEALQVFVRMLRT-EAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYD--S 698

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
              V N++I++Y K G +  A + FN ++ ++ ISW+ +I+G + +GCG +AL+LF  M 
Sbjct: 699 EREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMK 758

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
           +  + P+ VTF+ ++SACSH GLV +GL  F++M  ++++VP+ +HY CVVD+ GRAG L
Sbjct: 759 VCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQL 818

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           + A  +I+EMPI A+  +W  LL+AC IH+N E+ +R    L+  +     T+ L+SN +
Sbjct: 819 DRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIY 878

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           A + +W   +  R  ++  G+KK+ G SWIEV  ++
Sbjct: 879 AVSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKNAV 914



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 193/361 (53%), Gaps = 8/361 (2%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           Y  +  L A +     +   ++H  VI++G   + ++ N L+  Y   + + SA +IF++
Sbjct: 262 YVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFST 321

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLG 127
           +   D VS+ ++ISGL + GF   A+++F  +    +KP+  T+ S+LSAC+S+ +   G
Sbjct: 322 MNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKG 381

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
             +H+H+++     +IIL+ ++LD Y +C  + +    F+     N+V W  M+  Y + 
Sbjct: 382 MQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQL 441

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSN 246
               ++  +F++M+  +   PN+ T  ++L  C+S+ AL  G+ +H++ I T + L+V  
Sbjct: 442 DNLSDSFEIFRQMQ-MEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNV-- 498

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            V + +I+MY K G + +A+++   L   D +SW+ +I+G   +    +ALQLF  M   
Sbjct: 499 YVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYR 558

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
            +  D++ F + ISAC+    + QG  +  A S        +     ++ +Y R G ++E
Sbjct: 559 GIQFDNIGFASAISACAGIRALRQGQQI-HAQSYAAGFGADLSINNALISLYARCGRIQE 617

Query: 367 A 367
           A
Sbjct: 618 A 618



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 163/299 (54%), Gaps = 11/299 (3%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L AC+      K +++H+H I+ G   DI ++ SLL  Y    D+ +AH+ F   
Sbjct: 364 TVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXT 423

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGK 128
              ++V W  ++    +     ++ ++F  + ++   PN  T  S+L  C+SL +  LG+
Sbjct: 424 ETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGE 483

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IH H ++   + N+ + + ++D Y + G LA    +  ++P+ +VVSWT MI GY +  
Sbjct: 484 QIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHD 543

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH--SYIST-RYDLSVS 245
              EA+ +F+EME  +  + +     + +SAC+ I AL  G+ +H  SY +    DLS++
Sbjct: 544 MFSEALQLFEEME-YRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSIN 602

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
               NA+I++Y +CG +  A   F  +  K+ ISW++++SGLA +G   +ALQ+F  M+
Sbjct: 603 ----NALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRML 657



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 109/396 (27%), Positives = 202/396 (51%), Gaps = 18/396 (4%)

Query: 1   MLSCPSSYNHYTFTQALKAC---SLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVT 57
           ML+   + N YTF   LKAC    +A  + K  ++H+    YG      + N L+  Y  
Sbjct: 150 MLAEGITPNGYTFAGVLKACVGGDIAFNYVK--QVHSRTFYYGFDSSPLVANLLIDLYSK 207

Query: 58  VKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSV 114
              I SA ++FN +   D+V+W  +ISGLS+ G  +EAI +FC +   ++ P    L SV
Sbjct: 208 NGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSV 267

Query: 115 LSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV 174
           LSA + +   +LG+ +H   ++    +   + N ++  Y R   L S   +F  M  R+ 
Sbjct: 268 LSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDG 327

Query: 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
           VS+ ++I G  ++GF   A+ +F +M++    +P+  T+ ++LSAC+S+ AL  G  +HS
Sbjct: 328 VSYNSLISGLVQQGFSDRALELFTKMQRDC-LKPDCITVASLLSACASVGALHKGMQLHS 386

Query: 235 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
           + + +  +S   ++  +++++Y KC DV  A + F     ++ + W+ ++          
Sbjct: 387 H-AIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLS 445

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST-VYEIVPQMQHYAC 353
            + ++F  M +  + P+  T+ +++  C+  G     L L + + T V +   Q+  Y C
Sbjct: 446 DSFEIFRQMQMEGMIPNQFTYPSILRTCTSLG----ALYLGEQIHTHVIKTGFQLNVYVC 501

Query: 354 --VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
             ++DMY + G L  A   +R +P E +   W A++
Sbjct: 502 SVLIDMYAKYGQLALALRILRRLP-EDDVVSWTAMI 536



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 145/283 (51%), Gaps = 5/283 (1%)

Query: 8   YNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           +++  F  A+ AC+     ++  +IHA     G   D+ I N+L+  Y     I  A+  
Sbjct: 562 FDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLA 621

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSH 124
           F  +   + +SW +++SGL++ G+ +EA+ +F  +   + + N  T  S +SA +SL + 
Sbjct: 622 FEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANI 681

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           K G+ IH+  L+   ++   + N+++  Y + GS++     F  M +RNV+SW  MI GY
Sbjct: 682 KQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGY 741

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           ++ G   EA+ +F+EM K     PN  T V VLSACS I  +  G      +   +DL  
Sbjct: 742 SQHGCGMEALRLFEEM-KVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVP 800

Query: 245 SNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDKISWSTVISG 286
            +     V+++  + G +  A++ +  M    D + W T++S 
Sbjct: 801 KSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSA 843



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 145/323 (44%), Gaps = 17/323 (5%)

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAH---SLRNLNENNIILDNAILDFYIRCGSLA 160
           V+ N    + +L  C  L S  L + +  H   S    +   +++D +++D Y R G   
Sbjct: 54  VRSNYQNYLWLLEGC--LTSGSLFETMRLHCRISKSGFDGEPLLID-SLVDNYFRHGDQH 110

Query: 161 SCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
               +F +   R+V SW  MI  +  +    +   +F+ M   +   PN  T   VL AC
Sbjct: 111 GAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRM-LAEGITPNGYTFAGVLKAC 169

Query: 221 SSIS-ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS 279
                A ++ K VHS  +  Y    S LV N +I++Y K G +  A +VFN +  KD ++
Sbjct: 170 VGGDIAFNYVKQVHSR-TFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVT 228

Query: 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMS 339
           W  +ISGL+ NG   +A+ LF  M  + +FP      +++SA +   L + G  L     
Sbjct: 229 WVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLH---C 285

Query: 340 TVYEIVPQMQHYAC--VVDMYGRAGLLEEAEAFIREMPIE---AEWSVWGALLNACRIHR 394
            V +     + Y C  +V +Y R+  L  AE     M      +  S+   L+      R
Sbjct: 286 LVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDR 345

Query: 395 NDEMFDRIRQDLVNKKGVSVGTF 417
             E+F ++++D +    ++V + 
Sbjct: 346 ALELFTKMQRDCLKPDCITVASL 368



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 17/192 (8%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML   +  N +T+  A+ A +     ++  +IH+ V++ G+  +  + NSL+  Y     
Sbjct: 656 MLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGS 715

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVL 115
           I  A + FN +   +V+SW  +I+G S+ G   EA+ +F     CGI   PN  T V VL
Sbjct: 716 ISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGI--MPNHVTFVGVL 773

Query: 116 SACSSLVSHKLG-----KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP 170
           SACS +   K G          H L   +E+ +     ++D   R G L        +MP
Sbjct: 774 SACSHIGLVKEGLDYFESMFKIHDLVPKSEHYV----CVVDLLGRAGQLDRAMEYIKEMP 829

Query: 171 -KRNVVSWTTMI 181
              + + W T++
Sbjct: 830 IPADAMIWRTLL 841


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 141/420 (33%), Positives = 243/420 (57%), Gaps = 6/420 (1%)

Query: 45  IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV 104
           + +  +LL  Y     +  A ++F+++   + V+W+ +I G   C    +A  +F  +  
Sbjct: 158 VLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLA 217

Query: 105 KP----NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLA 160
           +     +  ++ S L AC+SL   ++G+ +HA   ++    ++   N++L  Y + G + 
Sbjct: 218 QGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLID 277

Query: 161 SCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
               LF +M  ++ VS++ ++ GY + G  +EA  VF++M+     EP+ AT+V+++ AC
Sbjct: 278 QAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQAC-NVEPDAATMVSLIPAC 336

Query: 221 SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
           S ++AL  G+  H  +  R  L+    + NA+I+MY KCG + ++ QVFNM+  +D +SW
Sbjct: 337 SHLAALQHGRCSHGSVIIR-GLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSW 395

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340
           +T+I+G  ++G G++A  LF  M      PD VTFI L+SACSH GLV +G   F  M  
Sbjct: 396 NTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGH 455

Query: 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFD 400
            Y + P+M+HY C+VD+  R G L+EA  FI+ MP+ A+  VW ALL ACR+++N ++  
Sbjct: 456 GYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGK 515

Query: 401 RIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           ++ + +        G F L+SN ++ A R+++  ++R   +  G KK  GCSWIE+N S+
Sbjct: 516 KVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSL 575



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/413 (28%), Positives = 203/413 (49%), Gaps = 28/413 (6%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    + N+YTF  ALKACS    H     IH H I  G   D+F+  +LL  YV    
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID-----VKPNANTLVSVL 115
           +  A  IF ++   D+V+W  +++G +  G +  A+     +      ++PNA+TLV++L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 116 SACSSLVSHKLGKAIHAHSLR-----NLNE-----NNIILDNAILDFYIRCGSLASCGYL 165
              +   +   G ++HA+ +R     N N      + ++L  A+LD Y +CGSL     +
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
           F  MP RN V+W+ +IGG+       +A  +F+ M        +  ++ + L AC+S+  
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDH 240

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285
           L  G+ +H+ ++ +  +      GN++++MY K G +  AI +F+ +A KD +S+S ++S
Sbjct: 241 LRMGEQLHALLA-KSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVS 299

Query: 286 GLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH-----GGLVDQGLILFKAMST 340
           G   NG   +A  +F  M    V PD  T ++LI ACSH      G    G ++ + +++
Sbjct: 300 GYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLAS 359

Query: 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
              I   +      +DMY + G ++ +      MP   +   W  ++    IH
Sbjct: 360 ETSICNAL------IDMYAKCGRIDLSRQVFNMMP-SRDIVSWNTMIAGYGIH 405



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 94/231 (40%), Gaps = 18/231 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M +C    +  T    + ACS     Q     H  VI  G   +  I N+L+  Y     
Sbjct: 317 MQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGR 376

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           I  + Q+FN +   D+VSW T+I+G    G  KEA  +F  ++     P+  T + +LSA
Sbjct: 377 IDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSA 436

Query: 118 C--SSLV---SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKR 172
           C  S LV    H      H + L    E+ I +    +D   R G L         MP R
Sbjct: 437 CSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICM----VDLLSRGGFLDEAYEFIQSMPLR 492

Query: 173 -NVVSWTTMIGG---YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
            +V  W  ++G    Y      K+   + QE+    E   N   L N+ SA
Sbjct: 493 ADVRVWVALLGACRVYKNIDLGKKVSRMIQEL--GPEGTGNFVLLSNIYSA 541


>gi|345505220|gb|AEN99834.1| chlororespiratory reduction 4 [Draba nemorosa]
          Length = 612

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 155/492 (31%), Positives = 256/492 (52%), Gaps = 36/492 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    S + ++ +  LKACS     ++ ++IH  + + G   D+++QN L+  Y+    
Sbjct: 112 MLETGVSVDKFSLSLVLKACSRLGFVKEGMQIHGFLRKTGIWSDLYLQNCLIGLYIKCGC 171

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPN-ANTLVSVLSACS 119
           +  A Q+F+ +   D VS+ ++I G  KCG  + A  +F   D+ P     L+S     S
Sbjct: 172 LGYARQVFDRMPRRDSVSYNSMIDGYVKCGMIESARGLF---DLMPKEKKNLISWNFMIS 228

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
                  G  +       + E ++I  N+++D Y++ G +     LF KMPKR+VV+W T
Sbjct: 229 GYAQRADGVNVAKKLFDEMPEKDLISWNSLIDGYVKHGRMEDAKSLFNKMPKRDVVTWAT 288

Query: 180 MIGGYAERGFC-------------------------------KEAVSVFQEMEKTKEAEP 208
           M+ GYA+ GF                                KEA+ +F +MEK     P
Sbjct: 289 MVDGYAKLGFVHQAKSLFDRMPLRDVVAYNSMITGYVQNRYHKEAIGIFNDMEKESHLSP 348

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           +E TLV VLSA + +  LS    +H YI       +   +G A+I+ Y KCG +  +++V
Sbjct: 349 DETTLVIVLSAIAQLGRLSKAVDIHLYIMDN-KFRLGGKLGVALIDTYSKCGSIQKSMRV 407

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F  +  K    W+ +I GLA++G G  A  +   +   ++ PDD+TFI +++ACSH GLV
Sbjct: 408 FEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRSIKPDDITFIGVLNACSHSGLV 467

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
            +GL+ F+ M   ++I P++QHY C+VD+  R+G +E A+  I EMPIE    +W   L 
Sbjct: 468 KEGLLCFELMRRKHKIEPKLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLT 527

Query: 389 ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
           AC  H+  E  + + + L  + G +  +F L+SN +A    W++  ++R  ++   L+K 
Sbjct: 528 ACSNHKEFETGELVAKHLFLQGGYNPSSFVLLSNMYASFGMWKEVRRVRTTMKERKLRKI 587

Query: 449 TGCSWIEVNPSI 460
            GCSWIE++ ++
Sbjct: 588 PGCSWIELDGNV 599



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 143/314 (45%), Gaps = 22/314 (7%)

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNANTLVSVL 115
           +F  + + ++  F D   W  +I   S     ++A+ +FC     G+ V  +  +L  VL
Sbjct: 71  VFHEYHVCSNGDFEDPFLWNAVIKSHSHGLDPRKALLLFCLMLETGVSV--DKFSLSLVL 128

Query: 116 SACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVV 175
            ACS L   K G  IH    +    +++ L N ++  YI+CG L     +F +MP+R+ V
Sbjct: 129 KACSRLGFVKEGMQIHGFLRKTGIWSDLYLQNCLIGLYIKCGCLGYARQVFDRMPRRDSV 188

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           S+ +MI GY + G  + A  +F  M K K+         N++S    IS  +      + 
Sbjct: 189 SYNSMIDGYVKCGMIESARGLFDLMPKEKK---------NLISWNFMISGYAQRADGVNV 239

Query: 236 ISTRYD-LSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG 293
               +D +   +L+  N++I+ YVK G +  A  +FN +  +D ++W+T++ G A  G  
Sbjct: 240 AKKLFDEMPEKDLISWNSLIDGYVKHGRMEDAKSLFNKMPKRDVVTWATMVDGYAKLGFV 299

Query: 294 RQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
            QA  LF  M +  V    V + ++I+         + + +F  M     + P       
Sbjct: 300 HQAKSLFDRMPLRDV----VAYNSMITGYVQNRYHKEAIGIFNDMEKESHLSPDETTLVI 355

Query: 354 VVDMYGRAGLLEEA 367
           V+    + G L +A
Sbjct: 356 VLSAIAQLGRLSKA 369


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 153/456 (33%), Positives = 267/456 (58%), Gaps = 7/456 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +T+   L+ C+         +IH HVI+ G   ++++ + L+  Y     +  A +I 
Sbjct: 462 NQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRIL 521

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   DVVSWT +I+G  +     EA+ +F  ++   ++ +     S +SAC+ + + +
Sbjct: 522 RRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALR 581

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ IHA S       ++ ++NA++  Y RCG +      F K+  +N +SW +++ G A
Sbjct: 582 QGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLA 641

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSV 244
           + G+ +EA+ VF  M +T EAE N  T  + +SA +S++ +  G+ +HS +  T YD   
Sbjct: 642 QSGYFEEALQVFVRMLRT-EAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYD--S 698

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
              V N++I++Y K G +  A + FN ++ ++ ISW+ +I+G + +GCG +AL+LF  M 
Sbjct: 699 EREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMK 758

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
           +  + P+ VTF+ ++SACSH GLV +GL  F++M  ++++VP+ +HY CVVD+ GRAG L
Sbjct: 759 VCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQL 818

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           + A  +I+EMPI A+  +W  LL+AC IH+N E+ +R    L+  +     T+ L+SN +
Sbjct: 819 DRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIY 878

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           A + +W   +  R  ++  G+KK+ G SWIEV  ++
Sbjct: 879 AVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAV 914



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 193/361 (53%), Gaps = 8/361 (2%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           Y  +  L A +     +   ++H  VI++G   + ++ N L+  Y   + + SA +IF++
Sbjct: 262 YVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFST 321

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLG 127
           +   D VS+ ++ISGL + GF   A+++F  +    +KP+  T+ S+LSAC+S+ +   G
Sbjct: 322 MNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKG 381

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
             +H+H+++     +IIL+ ++LD Y +C  + +    F+     N+V W  M+  Y + 
Sbjct: 382 MQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQL 441

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSN 246
               ++  +F++M+  +   PN+ T  ++L  C+S+ AL  G+ +H++ I T + L+V  
Sbjct: 442 DNLSDSFEIFRQMQ-MEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNV-- 498

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            V + +I+MY K G + +A+++   L   D +SW+ +I+G   +    +ALQLF  M   
Sbjct: 499 YVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYR 558

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
            +  D++ F + ISAC+    + QG  +  A S        +     ++ +Y R G ++E
Sbjct: 559 GIQFDNIGFASAISACAGIRALRQGQQI-HAQSYAAGFGADLSINNALISLYARCGRIQE 617

Query: 367 A 367
           A
Sbjct: 618 A 618



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 164/299 (54%), Gaps = 11/299 (3%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L AC+      K +++H+H I+ G   DI ++ SLL  Y    D+ +AH+ F + 
Sbjct: 364 TVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTT 423

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGK 128
              ++V W  ++    +     ++ ++F  + ++   PN  T  S+L  C+SL +  LG+
Sbjct: 424 ETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGE 483

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IH H ++   + N+ + + ++D Y + G LA    +  ++P+ +VVSWT MI GY +  
Sbjct: 484 QIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHD 543

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH--SYIST-RYDLSVS 245
              EA+ +F+EME  +  + +     + +SAC+ I AL  G+ +H  SY +    DLS++
Sbjct: 544 MFSEALQLFEEME-YRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSIN 602

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
               NA+I++Y +CG +  A   F  +  K+ ISW++++SGLA +G   +ALQ+F  M+
Sbjct: 603 ----NALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRML 657



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 109/396 (27%), Positives = 202/396 (51%), Gaps = 18/396 (4%)

Query: 1   MLSCPSSYNHYTFTQALKAC---SLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVT 57
           ML+   + N YTF   LKAC    +A  + K  ++H+    YG      + N L+  Y  
Sbjct: 150 MLAEGITPNGYTFAGVLKACVGGDIAFNYVK--QVHSRTFYYGFDSSPLVANLLIDLYSK 207

Query: 58  VKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSV 114
              I SA ++FN +   D+V+W  +ISGLS+ G  +EAI +FC +   ++ P    L SV
Sbjct: 208 NGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSV 267

Query: 115 LSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV 174
           LSA + +   +LG+ +H   ++    +   + N ++  Y R   L S   +F  M  R+ 
Sbjct: 268 LSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDG 327

Query: 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
           VS+ ++I G  ++GF   A+ +F +M++    +P+  T+ ++LSAC+S+ AL  G  +HS
Sbjct: 328 VSYNSLISGLVQQGFSDRALELFTKMQRDC-LKPDCITVASLLSACASVGALHKGMQLHS 386

Query: 235 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
           + + +  +S   ++  +++++Y KC DV  A + F     ++ + W+ ++          
Sbjct: 387 H-AIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLS 445

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST-VYEIVPQMQHYAC 353
            + ++F  M +  + P+  T+ +++  C+  G     L L + + T V +   Q+  Y C
Sbjct: 446 DSFEIFRQMQMEGMIPNQFTYPSILRTCTSLG----ALYLGEQIHTHVIKTGFQLNVYVC 501

Query: 354 --VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
             ++DMY + G L  A   +R +P E +   W A++
Sbjct: 502 SVLIDMYAKYGQLALALRILRRLP-EDDVVSWTAMI 536



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 145/283 (51%), Gaps = 5/283 (1%)

Query: 8   YNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           +++  F  A+ AC+     ++  +IHA     G   D+ I N+L+  Y     I  A+  
Sbjct: 562 FDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLA 621

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSH 124
           F  +   + +SW +++SGL++ G+ +EA+ +F  +   + + N  T  S +SA +SL + 
Sbjct: 622 FEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANI 681

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           K G+ IH+  L+   ++   + N+++  Y + GS++     F  M +RNV+SW  MI GY
Sbjct: 682 KQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGY 741

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           ++ G   EA+ +F+EM K     PN  T V VLSACS I  +  G      +   +DL  
Sbjct: 742 SQHGCGMEALRLFEEM-KVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVP 800

Query: 245 SNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDKISWSTVISG 286
            +     V+++  + G +  A++ +  M    D + W T++S 
Sbjct: 801 KSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSA 843



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 145/323 (44%), Gaps = 17/323 (5%)

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAH---SLRNLNENNIILDNAILDFYIRCGSLA 160
           V+ N    + +L  C  L S  L + +  H   S    +   +++D +++D Y R G   
Sbjct: 54  VRSNYQNYLWLLEGC--LTSGSLFETMRLHCRISKSGFDGEPLLID-SLVDNYFRHGDQH 110

Query: 161 SCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
               +F +   R+V SW  MI  +  +    +   +F+ M   +   PN  T   VL AC
Sbjct: 111 GAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRM-LAEGITPNGYTFAGVLKAC 169

Query: 221 SSIS-ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS 279
                A ++ K VHS  +  Y    S LV N +I++Y K G +  A +VFN +  KD ++
Sbjct: 170 VGGDIAFNYVKQVHSR-TFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVT 228

Query: 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMS 339
           W  +ISGL+ NG   +A+ LF  M  + +FP      +++SA +   L + G  L     
Sbjct: 229 WVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLH---C 285

Query: 340 TVYEIVPQMQHYAC--VVDMYGRAGLLEEAEAFIREMPIE---AEWSVWGALLNACRIHR 394
            V +     + Y C  +V +Y R+  L  AE     M      +  S+   L+      R
Sbjct: 286 LVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDR 345

Query: 395 NDEMFDRIRQDLVNKKGVSVGTF 417
             E+F ++++D +    ++V + 
Sbjct: 346 ALELFTKMQRDCLKPDCITVASL 368



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 17/192 (8%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML   +  N +T+  A+ A +     ++  +IH+ V++ G+  +  + NSL+  Y     
Sbjct: 656 MLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGS 715

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVL 115
           I  A + FN +   +V+SW  +I+G S+ G   EA+ +F     CGI   PN  T V VL
Sbjct: 716 ISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGI--MPNHVTFVGVL 773

Query: 116 SACSSLVSHKLG-----KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP 170
           SACS +   K G          H L   +E+ +     ++D   R G L        +MP
Sbjct: 774 SACSHIGLVKEGLDYFESMFKIHDLVPKSEHYV----CVVDLLGRAGQLDRAMEYIKEMP 829

Query: 171 -KRNVVSWTTMI 181
              + + W T++
Sbjct: 830 IPADAMIWRTLL 841


>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Vitis vinifera]
          Length = 635

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 163/492 (33%), Positives = 263/492 (53%), Gaps = 36/492 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML      + ++F+  LKACS     ++ ++IH  +       D+F+QN L+  Y+    
Sbjct: 113 MLENGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLLGRMEIGSDVFLQNCLMCLYLRCGC 172

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKP-NANTLVSVLSACS 119
           +  A Q+F+ ++  D VS+ ++I G  K G  K A ++F   DV P     L+S  S  S
Sbjct: 173 LGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVKSARELF---DVMPMEQKNLISWNSMIS 229

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
                + G  +       + + ++I  N+++D  ++CG + +  +LF +MPKR+VVSW  
Sbjct: 230 GYARSEEGLRVAWELFEEMPKRDLISWNSMIDGCVKCGKMENAHHLFNQMPKRDVVSWAN 289

Query: 180 MIGGYA-------------------------------ERGFCKEAVSVFQEMEKTKEAEP 208
           M+ GYA                               + G   EA++ F +M   KE  P
Sbjct: 290 MVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGHLMEALNFFHDMLSRKELFP 349

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           + ATL+  LSA + +     G  +H YI      S+S  +G A+I+MY KCG +  A+ V
Sbjct: 350 DNATLLITLSAIAQLGHFDEGVALHCYIEDN-GFSLSEKLGVALIDMYAKCGSIDNALSV 408

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F  +  K    W+ +I GLA++G G  A +LF  M    V PDD+TFI +++AC+H GLV
Sbjct: 409 FEDIDDKSIDHWNAIIGGLAIHGLGEVAFELFMEMEKLFVKPDDITFIGVLNACNHAGLV 468

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
            +GL+ F+ M  V+++ P++QHY C+VD+ GRAG +EEA+ F+ +MPIE    VW  LL+
Sbjct: 469 KEGLMCFELMRRVHKVEPKLQHYGCMVDILGRAGHVEEAKKFVEKMPIEPNDVVWRTLLS 528

Query: 389 ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
           ACR H N  + + + + L++    +  ++ L+SN +AG   W D  +IR  +++  LKK 
Sbjct: 529 ACRNHENFTIGEPVAKHLISVDSYNPSSYVLLSNIYAGFGMWNDVYRIRMMMKQRDLKKI 588

Query: 449 TGCSWIEVNPSI 460
            GCS IE+  ++
Sbjct: 589 PGCSQIELEGNV 600



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 152/351 (43%), Gaps = 46/351 (13%)

Query: 79  WTTIISGLSKCGFHKEAIDMFC-----GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAH 133
           W  II   S     +EA  +F      G+ V   + +LV  L ACS L   K G  IH  
Sbjct: 90  WNAIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLV--LKACSRLGLIKEGMQIHGL 147

Query: 134 SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
             R    +++ L N ++  Y+RCG L     LF +M KR+ VS+ +MI GY + G  K A
Sbjct: 148 LGRMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVKSA 207

Query: 194 VSVFQEMEKTKE------------AEPNEATLV-----------------NVLSACSSIS 224
             +F  M   ++            A   E   V                 +++  C    
Sbjct: 208 RELFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDLISWNSMIDGCVKCG 267

Query: 225 ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVI 284
            +    ++ + +  R  +S +N+V       Y K G++ IA  +F+ +  +D IS + ++
Sbjct: 268 KMENAHHLFNQMPKRDVVSWANMVDG-----YAKLGEIDIARGLFDEMPERDVISCNAMM 322

Query: 285 SGLAMNGCGRQALQLFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMS-TVY 342
           +G   NG   +AL  F  M+    +FPD+ T +  +SA +  G  D+G+ L   +    +
Sbjct: 323 AGYVQNGHLMEALNFFHDMLSRKELFPDNATLLITLSAIAQLGHFDEGVALHCYIEDNGF 382

Query: 343 EIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
            +  ++     ++DMY + G ++ A +   ++  +     W A++    IH
Sbjct: 383 SLSEKLG--VALIDMYAKCGSIDNALSVFEDID-DKSIDHWNAIIGGLAIH 430


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 148/449 (32%), Positives = 251/449 (55%), Gaps = 6/449 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           TFT AL AC+     +    +     + G+  D+F+ +SLLH Y     +  A ++F  +
Sbjct: 110 TFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFVRM 169

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              D V+W+T+++G    G   +AI M+  +    VK +   ++ V+ AC++  + ++G 
Sbjct: 170 PRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGA 229

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
           ++H H LR+    +++   +++D Y + G L     +F  M  RN VSW+ MI G+A+ G
Sbjct: 230 SVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNG 289

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
              EA+ +F+ M+ +   +P+   LV+ L ACS+I  L  G+ VH +I  R+D +   ++
Sbjct: 290 QSDEALRLFRNMQASG-IQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNC--IL 346

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
           G A I+MY KCG +  A  +FNM++ +D I W+ +I+    +G G+ AL LF  M    +
Sbjct: 347 GTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGM 406

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD  TF +L+SA SH GLV++G + F  M   ++I P  +HY C+VD+  R+GL+EEA 
Sbjct: 407 RPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEAS 466

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
             +  M  E   ++W ALL+ C  ++  E+ + I  +++  +   VG  AL+SN +A   
Sbjct: 467 DLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATK 526

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +W+   ++R  ++  G KK  GCS IE+ 
Sbjct: 527 KWDKVRQVRKLMKDSGSKKMPGCSSIEIR 555



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 166/314 (52%), Gaps = 17/314 (5%)

Query: 87  SKCGFHKEAIDMFCGID--VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
           S+ G    A+ +F  +    +P++ T    LSAC+ L   + G+++   +     ++++ 
Sbjct: 85  SRRGSPASALRVFRALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVF 144

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           + +++L  Y R G++     +FV+MP+R+ V+W+TM+ G+   G   +A+ +++ M +  
Sbjct: 145 VCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRM-RED 203

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
             + +E  ++ V+ AC++   +  G  VH ++  R+ + +  +   ++++MY K G + +
Sbjct: 204 GVKGDEVVMIGVIQACTAARNVRMGASVHGHL-LRHGMRMDVVTATSLVDMYAKNGLLDV 262

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
           A +VF ++ +++ +SWS +ISG A NG   +AL+LF  M  + + PD    ++ + ACS+
Sbjct: 263 ACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSN 322

Query: 325 GGLVDQGLILFKAMSTVYEIVPQMQHYACV-----VDMYGRAGLLEEAEAFIREMPIEAE 379
            G +  G        +V+  + +   + C+     +DMY + G L  A+     M  + +
Sbjct: 323 IGFLKLG-------RSVHGFIVRRFDFNCILGTAAIDMYSKCGSLASAQMLF-NMISDRD 374

Query: 380 WSVWGALLNACRIH 393
             +W A++  C  H
Sbjct: 375 LILWNAMIACCGAH 388


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 148/449 (32%), Positives = 251/449 (55%), Gaps = 6/449 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           TFT AL AC+     +    +     + G+  D+F+ +SLLH Y     +  A ++F  +
Sbjct: 110 TFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFVRM 169

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              D V+W+T+++G    G   +AI M+  +    VK +   ++ V+ AC++  + ++G 
Sbjct: 170 PRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGA 229

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
           ++H H LR+    +++   +++D Y + G L     +F  M  RN VSW+ MI G+A+ G
Sbjct: 230 SVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNG 289

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
              EA+ +F+ M+ +   +P+   LV+ L ACS+I  L  G+ VH +I  R+D +   ++
Sbjct: 290 QSDEALRLFRNMQASG-IQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNC--IL 346

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
           G A I+MY KCG +  A  +FNM++ +D I W+ +I+    +G G+ AL LF  M    +
Sbjct: 347 GTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGM 406

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD  TF +L+SA SH GLV++G + F  M   ++I P  +HY C+VD+  R+GL+EEA 
Sbjct: 407 RPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEAS 466

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
             +  M  E   ++W ALL+ C  ++  E+ + I  +++  +   VG  AL+SN +A   
Sbjct: 467 DLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATK 526

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +W+   ++R  ++  G KK  GCS IE+ 
Sbjct: 527 KWDKVRQVRKLMKDSGSKKMPGCSSIEIR 555



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 166/314 (52%), Gaps = 17/314 (5%)

Query: 87  SKCGFHKEAIDMFCGID--VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
           S+ G    A+ +F  +    +P++ T    LSAC+ L   + G+++   +     ++++ 
Sbjct: 85  SRRGSPASALRVFRALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVF 144

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           + +++L  Y R G++     +FV+MP+R+ V+W+TM+ G+   G   +A+ +++ M +  
Sbjct: 145 VCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRM-RED 203

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
             + +E  ++ V+ AC++   +  G  VH ++  R+ + +  +   ++++MY K G + +
Sbjct: 204 GVKGDEVVMIGVIQACTAARNVRMGASVHGHL-LRHGMRMDVVTATSLVDMYAKNGLLDV 262

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
           A +VF ++ +++ +SWS +ISG A NG   +AL+LF  M  + + PD    ++ + ACS+
Sbjct: 263 ACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSN 322

Query: 325 GGLVDQGLILFKAMSTVYEIVPQMQHYACV-----VDMYGRAGLLEEAEAFIREMPIEAE 379
            G +  G        +V+  + +   + C+     +DMY + G L  A+     M  + +
Sbjct: 323 IGFLKLG-------RSVHGFIVRRFDFNCILGTAAIDMYSKCGSLASAQMLF-NMISDRD 374

Query: 380 WSVWGALLNACRIH 393
             +W A++  C  H
Sbjct: 375 LILWNAMIACCGAH 388


>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
           [Vitis vinifera]
          Length = 807

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 140/452 (30%), Positives = 256/452 (56%), Gaps = 5/452 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           ++ T       CS +       +IH  + ++G  ++I ++ +LL  Y+   D+ +  +IF
Sbjct: 316 DYSTMVSLFSLCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIF 375

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHK 125
                 +++ W+ +IS  ++ G   +A+++F    ++    ++  LV+VL ACSSL    
Sbjct: 376 RRSQNHNLIMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLRACSSLTLKP 435

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G  IH  + +    +++ + +A++D Y +C  +     +F+++ ++++VSW  +I GYA
Sbjct: 436 EGMQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGYA 495

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +     EA+  F++M+  +E  PN  T+  +LS C+ +S ++  K VH Y+  R  L  +
Sbjct: 496 QDECADEALKAFRDMQ-LEEIRPNTVTIACILSVCAHLSVMTLCKEVHGYL-IRQGLGST 553

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
            LV N++I  Y KCGD+  ++  F  +  ++ +SW+++I G+ M+    + + LF  M+ 
Sbjct: 554 VLVSNSLIATYAKCGDINSSLYTFEKMPERNDVSWNSIILGMGMHSRTDEMIVLFDKMVA 613

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
           + + PD VTF A++SACSH G VD+G   FK+M   + + PQ++ Y C+VD+ GRAG L 
Sbjct: 614 SGIKPDHVTFTAILSACSHAGRVDEGCKYFKSMVEDFNLKPQLEQYTCMVDLLGRAGHLN 673

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           +A   I  MP   +  +WG+LL +C+ H ++ + + +   +      SVG   L++N + 
Sbjct: 674 QAYDLIMAMPCTPDDRIWGSLLGSCKNHGDEILAEIVANHIFKLVPSSVGYRVLLANLYE 733

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
              +  + +K+R EI+ MGLKKK GCSWIEV+
Sbjct: 734 NLGKGREGSKVRSEIKDMGLKKKPGCSWIEVD 765



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 120/417 (28%), Positives = 209/417 (50%), Gaps = 38/417 (9%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N      ++ +CS         EIH  V++ G   + ++ +SL+  Y+    I +A  IF
Sbjct: 210 NRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIF 269

Query: 69  NSVVFPDVVS-----WTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 120
           NS++  D V      W  +ISG    G   +A+ +F  +    +KP+ +T+VS+ S CS 
Sbjct: 270 NSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSE 329

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
            +    GK IH    +   +NNI ++ A+LD Y++CG + +   +F +    N++ W+ +
Sbjct: 330 SLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIMWSAV 389

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           I   A+ G   +A+ +F E  K ++   +   LV VL ACSS++    G  +H  ++T+ 
Sbjct: 390 ISNCAQSGCPTKALELFYEF-KMEDGLADSGILVAVLRACSSLTLKPEGMQIHG-LATKM 447

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
                  VG+A++++Y KC D+G + +VF  L+ KD +SW+ +ISG A + C  +AL+ F
Sbjct: 448 GFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGYAQDECADEALKAF 507

Query: 301 SLMIINAVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYEIVPQMQ 349
             M +  + P+ VT   ++S C+           HG L+ QGL      STV  +V    
Sbjct: 508 RDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEVHGYLIRQGL-----GSTV--LVSN-- 558

Query: 350 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEM---FDRI 402
               ++  Y + G +  +     +MP   + S W +++    +H R DEM   FD++
Sbjct: 559 ---SLIATYAKCGDINSSLYTFEKMPERNDVS-WNSIILGMGMHSRTDEMIVLFDKM 611



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 179/342 (52%), Gaps = 12/342 (3%)

Query: 28  KALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS 87
           K  +IH HV++ G L D+ + NSLL  Y     +  A Q+F  +   D+VSW T+ISG  
Sbjct: 127 KGRQIHGHVLKLGVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQ 186

Query: 88  KCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNI 143
           K   +  ++  F  +     + PN    VS + +CSSL S   G+ IH   +++  +   
Sbjct: 187 KSMDYTRSLMFFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEE 246

Query: 144 ILDNAILDFYIRCGSLASCGYLFVKM-----PKRNVVSWTTMIGGYAERGFCKEAVSVFQ 198
            L +++++ Y++CGS+ +   +F  +      +RN V W  MI GY   G   +A+ +F 
Sbjct: 247 YLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFI 306

Query: 199 EMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVK 258
           +M      +P+ +T+V++ S CS    ++FGK +H  I  ++ L  +  V  A+++MY+K
Sbjct: 307 KM-MVWGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLI-FKFGLKNNIRVETALLDMYLK 364

Query: 259 CGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIAL 318
           CGD+G  +++F      + I WS VIS  A +GC  +AL+LF    +     D    +A+
Sbjct: 365 CGDMGTGLKIFRRSQNHNLIMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAV 424

Query: 319 ISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
           + ACS   L  +G+ +   ++T    V  +   + +VD+Y +
Sbjct: 425 LRACSSLTLKPEGMQI-HGLATKMGFVSDVFVGSALVDLYAK 465



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 164/347 (47%), Gaps = 29/347 (8%)

Query: 59  KDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNANTLVS 113
           K + +  Q F SV F +      +I   ++ GF  +AI ++      G+ V+        
Sbjct: 61  KPLSTKIQTFVSVSFAN-----NVIREYTEDGFFDDAIGVYLKMLDDGVKVE-EFRYFPC 114

Query: 114 VLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
           ++ A   L     G+ IH H L+    +++ + N++L  Y +CG +     +F KMP+ +
Sbjct: 115 LIKAFGGLCDVYKGRQIHGHVLKLGVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVD 174

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
           +VSW TMI G+ +      ++  F+ M       PN    V+ + +CSS+ +L+ G+ +H
Sbjct: 175 LVSWNTMISGFQKSMDYTRSLMFFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIH 234

Query: 234 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS-----WSTVISGLA 288
             +  +  L V   + +++I MY+KCG +  A  +FN +  KD +      W+ +ISG  
Sbjct: 235 GVV-VKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYV 293

Query: 289 MNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG-----GLVDQGLILFKAMSTVYE 343
            NGC  QAL LF  M++  + PD  T ++L S CS       G    GLI FK     + 
Sbjct: 294 SNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLI-FK-----FG 347

Query: 344 IVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 390
           +   ++    ++DMY + G +       R         +W A+++ C
Sbjct: 348 LKNNIRVETALLDMYLKCGDMGTGLKIFRRSQ-NHNLIMWSAVISNC 393


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 142/435 (32%), Positives = 247/435 (56%), Gaps = 6/435 (1%)

Query: 31   EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
            E+H + ++   +++  + N+ +  Y     +  A ++F+ +    V SW  +I G ++  
Sbjct: 771  ELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSN 830

Query: 91   FHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
              + ++D    + +    P++ T+ S+LSACS L S +LGK +H   +RN  E ++ +  
Sbjct: 831  DPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYL 890

Query: 148  AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
            ++L  YI CG L +   LF  M  +++VSW T+I GY + GF   A+ VF++M      +
Sbjct: 891  SVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQM-VLYGIQ 949

Query: 208  PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
                +++ V  ACS + +L  G+  H+Y + ++ L     +  ++I+MY K G +  + +
Sbjct: 950  LCGISMMPVFGACSLLPSLRLGREAHAY-ALKHLLEDDAFIACSLIDMYAKNGSITQSSK 1008

Query: 268  VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
            VFN L  K   SW+ +I G  ++G  ++A++LF  M      PDD+TF+ +++AC+H GL
Sbjct: 1009 VFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGL 1068

Query: 328  VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA-EAFIREMPIEAEWSVWGAL 386
            + +GL     M + + + P ++HYACV+DM GRAG L++A      EM  EA+  +W +L
Sbjct: 1069 IHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSL 1128

Query: 387  LNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446
            L++CRIH+N EM +++   L   +      + L+SN +AG  +WED  K+R  +  M L+
Sbjct: 1129 LSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLR 1188

Query: 447  KKTGCSWIEVNPSIF 461
            K  GCSWIE+N  +F
Sbjct: 1189 KDAGCSWIELNRKVF 1203



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 97/323 (30%), Positives = 170/323 (52%), Gaps = 9/323 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +H+T+   +KAC+        L +H  V++ G + D+F+ N+L+ FY T   +  A Q+F
Sbjct: 541 DHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLF 600

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK-------PNANTLVSVLSACSSL 121
           + +   ++VSW ++I   S  GF +E+  +   +  +       P+  TLV+VL  C+  
Sbjct: 601 DIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCARE 660

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
               LGK +H  +++   +  ++L+NA++D Y +CG + +   +F     +NVVSW TM+
Sbjct: 661 REIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMV 720

Query: 182 GGYAERGFCKEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           GG++  G       V ++M    ++ + +E T++N +  C   S L   K +H Y S + 
Sbjct: 721 GGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCY-SLKQ 779

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
           +   + LV NA +  Y KCG +  A +VF+ +  K   SW+ +I G A +   R +L   
Sbjct: 780 EFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAH 839

Query: 301 SLMIINAVFPDDVTFIALISACS 323
             M I+ + PD  T  +L+SACS
Sbjct: 840 LQMKISGLLPDSFTVCSLLSACS 862



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 143/289 (49%), Gaps = 20/289 (6%)

Query: 9    NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
            + +T    L ACS     +   E+H  +I      D+F+  S+L  Y+   ++ +   +F
Sbjct: 850  DSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALF 909

Query: 69   NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF----------CGIDVKPNANTLVSVLSAC 118
            +++    +VSW T+I+G  + GF   A+ +F          CGI + P       V  AC
Sbjct: 910  DAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMP-------VFGAC 962

Query: 119  SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWT 178
            S L S +LG+  HA++L++L E++  +  +++D Y + GS+     +F  + +++  SW 
Sbjct: 963  SLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWN 1022

Query: 179  TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST 238
             MI GY   G  KEA+ +F+EM++T    P++ T + VL+AC+    +  G      + +
Sbjct: 1023 AMIMGYGIHGLAKEAIKLFEEMQRTGH-NPDDLTFLGVLTACNHSGLIHEGLRYLDQMKS 1081

Query: 239  RYDLSVSNLVGNAVINMYVKCGDVGIAIQVF--NMLAYKDKISWSTVIS 285
             + L  +      VI+M  + G +  A++V    M    D   W +++S
Sbjct: 1082 SFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLS 1130



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 135/267 (50%), Gaps = 10/267 (3%)

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEA----IDMFCGIDVKPNANTLVSVLSACSSLV 122
           +F+++   ++  W  +IS  S+   + E     I+M    D+ P+  T   V+ AC+ + 
Sbjct: 497 VFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMS 556

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
              +G A+H   ++     ++ + NA++ FY   G +     LF  MP+RN+VSW +MI 
Sbjct: 557 DVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIR 616

Query: 183 GYAERGFCKEAVSVFQE-MEKTKEAE--PNEATLVNVLSACSSISALSFGKYVHSYISTR 239
            +++ GF +E+  +  E ME+  +    P+ ATLV VL  C+    +  GK VH + + +
Sbjct: 617 VFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGW-AVK 675

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
             L    ++ NA+++MY KCG +  A  +F M   K+ +SW+T++ G +  G       +
Sbjct: 676 LRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDV 735

Query: 300 FSLMIINA--VFPDDVTFIALISACSH 324
              M+     V  D+VT +  +  C H
Sbjct: 736 LRQMLAGGEDVKADEVTILNAVPVCFH 762



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 138/316 (43%), Gaps = 13/316 (4%)

Query: 114 VLSACSSLVSHKLGKAIH---AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP 170
           +L A       ++G+ IH   + S R  N++  +L   I+  Y  CGS     ++F  + 
Sbjct: 445 LLQASGKRKDIEMGRKIHQLVSGSTRLRNDD--VLCTRIITMYAMCGSPDDSRFVFDALR 502

Query: 171 KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGK 230
            +N+  W  +I  Y+      E +  F EM  T +  P+  T   V+ AC+ +S +  G 
Sbjct: 503 SKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGL 562

Query: 231 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMN 290
            VH  +  +  L     VGNA+++ Y   G V  A+Q+F+++  ++ +SW+++I   + N
Sbjct: 563 AVHGLV-VKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDN 621

Query: 291 GCGRQALQLFSLMI----INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 346
           G   ++  L   M+      A  PD  T + ++  C+    +  G  +    +    +  
Sbjct: 622 GFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGV-HGWAVKLRLDK 680

Query: 347 QMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE-MFDRIRQD 405
           ++     ++DMY + G +  A+  I +M        W  ++       +    FD +RQ 
Sbjct: 681 ELVLNNALMDMYSKCGCITNAQ-MIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQM 739

Query: 406 LVNKKGVSVGTFALMS 421
           L   + V      +++
Sbjct: 740 LAGGEDVKADEVTILN 755


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 159/521 (30%), Positives = 271/521 (52%), Gaps = 71/521 (13%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
             +T T  L +C++        ++H+ V++ G    + + NS+L+ Y    D  +A  +F
Sbjct: 57  TQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVF 116

Query: 69  -----------NSVV------------------FPD--VVSWTTIISGLSKCGFHKEAID 97
                      N++V                   PD  +VSW  +I+G ++ G   +A+ 
Sbjct: 117 ERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALK 176

Query: 98  MFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNL--------------- 138
           +F  +     + P+  T+ SVLSAC++L + ++GK +HA+ LR                 
Sbjct: 177 LFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTY 236

Query: 139 ------------------NENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
                              + N+I   A+L+ Y++ G + S   +F  M  R+VV+WT M
Sbjct: 237 AKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAM 296

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           I GY + G   EA+ +F+ M  T   EPN  TL  VLS C+S++ L +GK +H   + R 
Sbjct: 297 IVGYEQNGRNDEAIDLFRSM-ITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCR-AIRS 354

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDKISWSTVISGLAMNGCGRQALQL 299
            L  S+ V NA+I MY + G    A ++F+ + + K+ I+W+++I  LA +G G +A+ L
Sbjct: 355 LLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGL 414

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
           F  M+   V PD +T++ ++SACSH G V++G   +  +   ++I P+M HYAC+VD+  
Sbjct: 415 FEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLA 474

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFAL 419
           RAGL  EA+ FIR MP+E +   WG+LL+ACR+H+N E+ +   + L++    + G ++ 
Sbjct: 475 RAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSA 534

Query: 420 MSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           ++N ++   RW D  +I    +   ++K+TG SW  +   I
Sbjct: 535 IANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKI 575



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 180/402 (44%), Gaps = 71/402 (17%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSS 120
           A  +F  +   D VSWT ++ GL++ G   EAI     +      P   TL +VLS+C+ 
Sbjct: 11  ARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAV 70

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCG---------------SLAS---- 161
             +  +G+ +H+  ++    + + + N++L+ Y +CG               S++S    
Sbjct: 71  TQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAM 130

Query: 162 ------------CGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN 209
                          LF  MP R++VSW  MI GY + G   +A+ +F  M       P+
Sbjct: 131 VSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPD 190

Query: 210 EATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINM-------------- 255
           E T+ +VLSAC+++  +  GK VH+YI  R +++ ++ V NA+I+               
Sbjct: 191 EFTITSVLSACANLGNVRIGKQVHAYI-LRTEMAYNSQVTNALISTYAKSGSVENARRIM 249

Query: 256 -------------------YVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
                              YVK GD+  A ++F ++  +D ++W+ +I G   NG   +A
Sbjct: 250 DQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEA 309

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVPQMQHYACVV 355
           + LF  MI     P+  T  A++S C+    +D G  I  +A+ ++ E    + +   ++
Sbjct: 310 IDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSN--AII 367

Query: 356 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
            MY R+G    A     ++    E   W +++ A   H   E
Sbjct: 368 TMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGE 409



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 120/254 (47%), Gaps = 35/254 (13%)

Query: 152 FYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEA 211
            + + G LA    +F +MP+R+ VSWT M+ G    G   EA+    +M       P + 
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDM-TADGFTPTQF 59

Query: 212 TLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 271
           TL NVLS+C+   A + G+ VHS++  +  L     V N+V+NMY KCGD   A  VF  
Sbjct: 60  TLTNVLSSCAVTQAGAVGRKVHSFV-VKLGLGSCVPVANSVLNMYGKCGDSETATTVFER 118

Query: 272 LAYK-----------------------------DK--ISWSTVISGLAMNGCGRQALQLF 300
           +  +                             D+  +SW+ +I+G   NG   +AL+LF
Sbjct: 119 MPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLF 178

Query: 301 SLMI-INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
           S M+  +++ PD+ T  +++SAC++ G V  G  +  A     E+    Q    ++  Y 
Sbjct: 179 SRMLHESSMAPDEFTITSVLSACANLGNVRIGKQV-HAYILRTEMAYNSQVTNALISTYA 237

Query: 360 RAGLLEEAEAFIRE 373
           ++G +E A   + +
Sbjct: 238 KSGSVENARRIMDQ 251



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 100/240 (41%), Gaps = 25/240 (10%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M++C    N YT    L  C+         +IH   I         + N+++  Y     
Sbjct: 316 MITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGS 375

Query: 61  IFSAHQIFNSVVF-PDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLS 116
              A ++F+ V +  + ++WT++I  L++ G  +EA+ +F  +    V+P+  T V VLS
Sbjct: 376 FPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLS 435

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNA----ILDFYIRCGSLASCGYLFVKMP-K 171
           ACS       GK  +       NE+ I  + +    ++D   R G  +       +MP +
Sbjct: 436 ACSHAGFVNEGKRYYDQI---KNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVE 492

Query: 172 RNVVSWTTMIGGYAERGFC---KEAVSVFQEMEKTKEAEPNE----ATLVNVLSACSSIS 224
            + ++W +++        C   K A       EK    +PN     + + NV SAC   S
Sbjct: 493 PDAIAWGSLLSA------CRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWS 546


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 151/471 (32%), Positives = 260/471 (55%), Gaps = 43/471 (9%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKD---------IFSAHQIFNSVVFPDVVSWTTI 82
           IH  ++    + D+F+ + LL   + V D         +  A+ IF+ +  P++  +  +
Sbjct: 31  IHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYGIFSQIQNPNLFVFNVL 90

Query: 83  ISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLN 139
           I   S      +A   +  +    + P+  T   ++ A + +    +G+  H+  +R   
Sbjct: 91  IRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECVVVGEQTHSQIVRFGF 150

Query: 140 ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQE 199
           +N++ ++N+++  Y  CG +A+ G +F +MP R+VVSWT+M+ GY + G  ++A  +F E
Sbjct: 151 QNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDE 210

Query: 200 ME------------------------------KTKEAEPNEATLVNVLSACSSISALSFG 229
           M                               K +    NE  +V+V+S+C+ + AL FG
Sbjct: 211 MPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSCAHLGALEFG 270

Query: 230 KYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAM 289
           +  H Y+  +  ++V+ ++G A+++MY +CG++  AI+VF  L  KD +SWS++I GLA+
Sbjct: 271 ERAHEYV-VKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAV 329

Query: 290 NGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQ 349
           +G   +A+  FS M+     P D+T  A++SACSHGGLVD+GL +++ M   Y I P+++
Sbjct: 330 HGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLE 389

Query: 350 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNK 409
           HY C+VDM GRAG L EAE FI +MP++    + GALL AC+I++N E+ +R+   L+  
Sbjct: 390 HYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACKIYKNTEVAERVGNMLIEV 449

Query: 410 KGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           K    G + L+SN +A A +WE    +RD ++   +KK  G S IE++  I
Sbjct: 450 KPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWSLIEIDGKI 500



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 134/269 (49%), Gaps = 35/269 (13%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           + H+ ++ +G  +D++++NSL+H Y     I +A +IF  + F DVVSWT++++G  KCG
Sbjct: 140 QTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCG 199

Query: 91  FHKEAIDMF----------------------C---GID---------VKPNANTLVSVLS 116
             ++A +MF                      C    ID         V  N   +VSV+S
Sbjct: 200 MVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVIS 259

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
           +C+ L + + G+  H + +++    N+IL  A++D Y RCG +     +F ++P ++ +S
Sbjct: 260 SCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLS 319

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           W+++I G A  G   +A+  F +M +   + P + TL  VLSACS    +  G  ++  +
Sbjct: 320 WSSIIKGLAVHGHAHKAIHYFSQMVRLGFS-PRDITLTAVLSACSHGGLVDKGLEIYENM 378

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIA 265
              Y +         +++M  + G +  A
Sbjct: 379 KRDYGIEPRLEHYGCIVDMLGRAGKLAEA 407



 Score = 39.7 bits (91), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 50/248 (20%), Positives = 102/248 (41%), Gaps = 36/248 (14%)

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGD---------VGIAI 266
           +L +CSS S L   K +H ++  R  L     V + ++ + +   D         +G A 
Sbjct: 18  LLQSCSSFSDL---KIIHGFL-LRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAY 73

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH-- 324
            +F+ +   +   ++ +I   +      +A   ++ M+ + ++PD++TF  LI A +   
Sbjct: 74  GIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEME 133

Query: 325 ----GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 380
               G      ++ F   + VY           +V MY   GL+  A     +MP     
Sbjct: 134 CVVVGEQTHSQIVRFGFQNDVYV-------ENSLVHMYANCGLIAAAGRIFGQMPFRDVV 186

Query: 381 SVWGALLNACR---IHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIR 437
           S    +   C+   +    EMFD +          ++ T+++M N +A  + +E    + 
Sbjct: 187 SWTSMVAGYCKCGMVEDAREMFDEMPHR-------NLFTWSIMINGYAKNNCFEKAIDLF 239

Query: 438 DEIRRMGL 445
           + ++R G+
Sbjct: 240 ELMKREGV 247


>gi|125562361|gb|EAZ07809.1| hypothetical protein OsI_30067 [Oryza sativa Indica Group]
          Length = 642

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 155/437 (35%), Positives = 248/437 (56%), Gaps = 8/437 (1%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           + ++Y+   A+ A +         + HA  ++     D F+ N+L++ Y +     SA  
Sbjct: 2   TLDNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARL 61

Query: 67  IFNSVV--FPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSL 121
           + +S      DVVSW TII+G  + G   +A+  F  +    V+ +  TL++VL AC+  
Sbjct: 62  VLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACART 121

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
            + K+G   HA  + N  E N  + ++++  Y +CG +     +F +MP+RNVV WT+MI
Sbjct: 122 GAMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMI 181

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
            G  + G  KEAV +F++M+     + ++AT+  V+S+C  + AL  G+Y+H+Y    + 
Sbjct: 182 AGCTQSGRFKEAVDLFRDMQ-IAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDG-HG 239

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
           L     V N++I+MY KCGDV  A Q+F  L  +D  +W+ +I G AMNG   +AL LF+
Sbjct: 240 LGKELSVKNSLIDMYSKCGDVNKAYQIFRGLTKRDVFTWTVMIMGFAMNGLCVEALDLFA 299

Query: 302 LMI-INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
            M   + V P++V F+ +++ACSHGGLV+QG   F  MS VY +VP+++HY C+VD+ GR
Sbjct: 300 QMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGR 359

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           A LL EAE FI++MP+  +  VW +LL ACR      + +   + +   +    G   L+
Sbjct: 360 AKLLAEAEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQLEPKRCGGHVLL 419

Query: 421 SNTFAGADRWEDTNKIR 437
           SN +A   RW D N +R
Sbjct: 420 SNVYATTSRWVDVNNVR 436


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 141/420 (33%), Positives = 243/420 (57%), Gaps = 6/420 (1%)

Query: 45  IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV 104
           + +  +LL  Y     +  A ++F+++   + V+W+ +I G   C    +A  +F  +  
Sbjct: 273 VLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLA 332

Query: 105 KP----NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLA 160
           +     +  ++ S L AC+SL   ++G+ +HA   ++    ++   N++L  Y + G + 
Sbjct: 333 QGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLID 392

Query: 161 SCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
               LF +M  ++ VS++ ++ GY + G  +EA  VF++M+     EP+ AT+V+++ AC
Sbjct: 393 QAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQAC-NVEPDAATMVSLIPAC 451

Query: 221 SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
           S ++AL  G+  H  +  R  L+    + NA+I+MY KCG + ++ QVFNM+  +D +SW
Sbjct: 452 SHLAALQHGRCSHGSVIIR-GLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSW 510

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340
           +T+I+G  ++G G++A  LF  M      PD VTFI L+SACSH GLV +G   F  M  
Sbjct: 511 NTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRH 570

Query: 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFD 400
            Y + P+M+HY C+VD+  R G L+EA  FI+ MP+ A+  VW ALL ACR+++N ++  
Sbjct: 571 GYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGK 630

Query: 401 RIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           ++ + +        G F L+SN ++ A R+++  ++R   +  G KK  GCSWIE+N S+
Sbjct: 631 KVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSL 690



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/405 (28%), Positives = 200/405 (49%), Gaps = 28/405 (6%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N+YTF  ALKACS    H     IH H I  G   D+F+  +LL  YV    +  A  IF
Sbjct: 124 NNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIF 183

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID-----VKPNANTLVSVLSACSSLVS 123
            ++   D+V+W  +++G +  G +  A+     +      ++PNA+TLV++L   +   +
Sbjct: 184 ATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGA 243

Query: 124 HKLGKAIHAHSLR-----NLNE-----NNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
              G ++HA+ +R     N N      + ++L  A+LD Y +CGSL     +F  MP RN
Sbjct: 244 LAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARN 303

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
            V+W+ +IGG+       +A  +F+ M        +  ++ + L AC+S+  L  G+ +H
Sbjct: 304 EVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLH 363

Query: 234 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG 293
           + ++ +  +      GN++++MY K G +  AI +F+ +A KD +S+S ++SG   NG  
Sbjct: 364 ALLA-KSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRA 422

Query: 294 RQALQLFSLMIINAVFPDDVTFIALISACSH-----GGLVDQGLILFKAMSTVYEIVPQM 348
            +A  +F  M    V PD  T ++LI ACSH      G    G ++ + +++   I   +
Sbjct: 423 EEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNAL 482

Query: 349 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
                 +DMY + G ++ +      MP   +   W  ++    IH
Sbjct: 483 ------IDMYAKCGRIDLSRQVFNMMP-SRDIVSWNTMIAGYGIH 520



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 161/330 (48%), Gaps = 17/330 (5%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDM-----FCGIDVKPNANTLVSVLSAC 118
           AH +F+ +  PDV ++  +I   S       A  +          V PN  T    L AC
Sbjct: 76  AHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKAC 135

Query: 119 SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWT 178
           S+L  H  G+AIH H++    + ++ +  A+LD Y++C  L    ++F  MP R++V+W 
Sbjct: 136 SALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWN 195

Query: 179 TMIGGYAERGFCKEAVSVFQEME-KTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-- 235
            M+ GYA  G    AV+    M+ +     PN +TLV +L   +   AL+ G  VH+Y  
Sbjct: 196 AMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRI 255

Query: 236 -------ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
                   +++  L+   L+G A+++MY KCG +  A +VF+ +  +++++WS +I G  
Sbjct: 256 RACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFV 315

Query: 289 MNGCGRQALQLFSLMIINAV-FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 347
           +     QA  LF  M+   + F    +  + + AC+    +  G  L  A+     +   
Sbjct: 316 LCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQL-HALLAKSGVHAD 374

Query: 348 MQHYACVVDMYGRAGLLEEAEAFIREMPIE 377
           +     ++ MY +AGL+++A A   EM ++
Sbjct: 375 LTAGNSLLSMYAKAGLIDQAIALFDEMAVK 404



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 94/231 (40%), Gaps = 18/231 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M +C    +  T    + ACS     Q     H  VI  G   +  I N+L+  Y     
Sbjct: 432 MQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGR 491

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           I  + Q+FN +   D+VSW T+I+G    G  KEA  +F  ++     P+  T + +LSA
Sbjct: 492 IDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSA 551

Query: 118 C--SSLV---SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKR 172
           C  S LV    H      H + L    E+ I +    +D   R G L         MP R
Sbjct: 552 CSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICM----VDLLSRGGFLDEAYEFIQSMPLR 607

Query: 173 -NVVSWTTMIGG---YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
            +V  W  ++G    Y      K+   + QE+    E   N   L N+ SA
Sbjct: 608 ADVRVWVALLGACRVYKNIDLGKKVSRMIQEL--GPEGTGNFVLLSNIYSA 656


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 148/454 (32%), Positives = 263/454 (57%), Gaps = 9/454 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +T+   L+ C+         +IH+  ++ G   D+++   L+  Y     +  A ++ 
Sbjct: 344 NQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVL 403

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLVS 123
             +   DVVSWT++I+G  +    K+A+  F     CGI   P+   L S +S C+ + +
Sbjct: 404 EMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGI--WPDNIGLASAISGCAGINA 461

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            + G  IHA    +    ++ + NA+++ Y RCG +      F +M  ++ ++   ++ G
Sbjct: 462 MRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSG 521

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           +A+ G  +EA+ VF  M+++   + N  T V+ LSA ++++ +  GK +H+ +  +   S
Sbjct: 522 FAQSGLHEEALKVFMRMDQSG-VKHNVFTFVSALSASANLAEIKQGKQIHARV-IKTGHS 579

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
               VGNA+I++Y KCG    A   F+ ++ ++++SW+T+I+  + +G G +AL LF  M
Sbjct: 580 FETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQM 639

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
               + P+DVTFI +++ACSH GLV++GL  FK+MS  Y I P+  HYACV+D++GRAG 
Sbjct: 640 KKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQ 699

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           L+ A+ FI EMPI A+  VW  LL+AC++H+N E+ +   + L+  +     ++ L+SN 
Sbjct: 700 LDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNA 759

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +A  ++W + +++R  +R  G++K+ G SWIEV 
Sbjct: 760 YAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVK 793



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 114/421 (27%), Positives = 220/421 (52%), Gaps = 16/421 (3%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T +  L AC+     QK  ++H+++ + G   D  ++ SLL  YV   D+ +A  IFNS 
Sbjct: 246 TISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSS 305

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
              +VV W  ++    +     ++ ++FC +    ++PN  T   +L  C+      LG+
Sbjct: 306 DRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGE 365

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IH+ S++   E+++ +   ++D Y + G L     +   + +++VVSWT+MI GY +  
Sbjct: 366 QIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHE 425

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS-TRYDLSVSNL 247
            CK+A++ F+EM+K     P+   L + +S C+ I+A+  G  +H+ I  + Y   VS  
Sbjct: 426 CCKDALAAFKEMQKCG-IWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVS-- 482

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           + NA++N+Y +CG +  A   F  +  KD I+ + ++SG A +G   +AL++F  M  + 
Sbjct: 483 IWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSG 542

Query: 308 VFPDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
           V  +  TF++ +SA ++   + QG  I  + + T +    ++ +   ++ +YG+ G  E+
Sbjct: 543 VKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGN--ALISLYGKCGSFED 600

Query: 367 AEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQDLVNKKGVS-VGTFALMS 421
           A+    EM    E S W  ++ +C  H       ++FD+++++ +    V+ +G  A  S
Sbjct: 601 AKMEFSEMSERNEVS-WNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACS 659

Query: 422 N 422
           +
Sbjct: 660 H 660



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 188/370 (50%), Gaps = 6/370 (1%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           Y  +  L +C+ A    +   IHA   ++G   +IF+ N+++  Y+       A ++F  
Sbjct: 144 YVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCD 203

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLG 127
           +   D V++ T+ISG ++CG  + A+++F  +    + P+  T+ S+L+AC+SL   + G
Sbjct: 204 MPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKG 263

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
             +H++  +    ++ I++ ++LD Y++CG + +   +F    + NVV W  M+  + + 
Sbjct: 264 TQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQI 323

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
               ++  +F +M+      PN+ T   +L  C+    +  G+ +HS +S +        
Sbjct: 324 NDLAKSFELFCQMQAAG-IRPNQFTYPCILRTCTCTREIDLGEQIHS-LSVKTGFESDMY 381

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V   +I+MY K G +  A +V  ML  KD +SW+++I+G   + C + AL  F  M    
Sbjct: 382 VSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCG 441

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           ++PD++   + IS C+    + QGL +  A   V      +  +  +V++Y R G + EA
Sbjct: 442 IWPDNIGLASAISGCAGINAMRQGLQIH-ARIYVSGYSGDVSIWNALVNLYARCGRIREA 500

Query: 368 EAFIREMPIE 377
            +   EM ++
Sbjct: 501 FSSFEEMELK 510



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 190/379 (50%), Gaps = 8/379 (2%)

Query: 13  FTQALKAC-SLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           F  AL+AC       Q   EIHA  +  G      + N L+  Y     +  A ++F  +
Sbjct: 44  FACALRACRGNGRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEEL 103

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              D VSW  ++SG ++ G  +EA+ ++  +    V P    L SVLS+C+       G+
Sbjct: 104 SARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGR 163

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IHA   ++   + I + NA++  Y+RCGS      +F  MP R+ V++ T+I G+A+ G
Sbjct: 164 LIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCG 223

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
             + A+ +F+EM+ +    P+  T+ ++L+AC+S+  L  G  +HSY+  +  +S   ++
Sbjct: 224 HGEHALEIFEEMQFSG-LSPDCVTISSLLAACASLGDLQKGTQLHSYL-FKAGISSDYIM 281

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
             +++++YVKCGDV  A+ +FN     + + W+ ++          ++ +LF  M    +
Sbjct: 282 EGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGI 341

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            P+  T+  ++  C+    +D G  +  ++S        M     ++DMY + G LE+A 
Sbjct: 342 RPNQFTYPCILRTCTCTREIDLGEQIH-SLSVKTGFESDMYVSGVLIDMYSKYGWLEKAR 400

Query: 369 AFIREMPIEAEWSVWGALL 387
             + EM  E +   W +++
Sbjct: 401 RVL-EMLKEKDVVSWTSMI 418



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 145/289 (50%), Gaps = 5/289 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M  C    ++     A+  C+  +  ++ L+IHA +   G+  D+ I N+L++ Y     
Sbjct: 437 MQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGR 496

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           I  A   F  +   D ++   ++SG ++ G H+EA+ +F  +D   VK N  T VS LSA
Sbjct: 497 IREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSA 556

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
            ++L   K GK IHA  ++  +     + NA++  Y +CGS       F +M +RN VSW
Sbjct: 557 SANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSW 616

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
            T+I   ++ G   EA+ +F +M+K +  +PN+ T + VL+ACS +  +  G      +S
Sbjct: 617 NTIITSCSQHGRGLEALDLFDQMKK-EGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMS 675

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDKISWSTVIS 285
             Y +         VI+++ + G +  A + +  M    D + W T++S
Sbjct: 676 DEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLS 724


>gi|449508637|ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 594

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 154/469 (32%), Positives = 262/469 (55%), Gaps = 15/469 (3%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYV---- 56
           ML      N +T +  LKAC            H+   ++G    +++QN+LL  Y     
Sbjct: 100 MLRSEVQPNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCA 159

Query: 57  TVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVS 113
           T+ D  S   +FN +     VSWTT+I+G +  G     +  F  +   DV PN+ +   
Sbjct: 160 TMDDALS---VFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSI 216

Query: 114 VLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
              AC+S+ S+  GK IHA   +     +  + N+ILD Y RC  L      F ++ ++N
Sbjct: 217 AARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKN 276

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
           +++W T+I GY ER    E++S+F +M  ++  +PN  T  ++ +AC++++ LS G+ VH
Sbjct: 277 LITWNTLIAGY-ERSDSSESLSLFFQM-GSEGYKPNCFTFTSITAACANLAVLSCGQQVH 334

Query: 234 SYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
             I  R +D +V+ +  N++I+MY KCG +  + ++F  +  +D +SW+T++ G   +G 
Sbjct: 335 GGIVRRGFDKNVALI--NSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGY 392

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
           G++A++LF  M+ + + PD + F+ ++  CSH GLVD+GL  F++M   Y I P  + Y 
Sbjct: 393 GKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIYR 452

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           CVVD+ GRAG +EEA   +  MP E + SVWGALL AC+ ++   + +   Q +++++  
Sbjct: 453 CVVDLLGRAGRVEEAFQLVENMPFEPDESVWGALLGACKAYKLSNLGNLAAQRVLDRRPN 512

Query: 413 SVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
             GT+ L+S  +A   +W +  K+R  ++ M  KK+ G SWIE+   ++
Sbjct: 513 MAGTYLLLSKIYAAEGKWGEFAKMRKLMKGMNKKKEVGKSWIEIRNEVY 561



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 165/327 (50%), Gaps = 30/327 (9%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 120
           A  +FN +   DVV+WT +I G + C  + +A  MF  +   +V+PNA T+ SVL AC  
Sbjct: 62  ACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQPNAFTMSSVLKACKG 121

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFY-IRCGSLASCGYLFVKMPKRNVVSWTT 179
           + +   G   H+ + ++  + ++ + NA+LD Y   C ++     +F  +P +  VSWTT
Sbjct: 122 MKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIPLKTAVSWTT 181

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           +I G+  RG     +  F++M   ++  PN  +      AC+SIS+ S GK +H+ + T+
Sbjct: 182 LIAGFTHRGDGYSGLLAFRQM-LLEDVGPNSFSFSIAARACASISSYSCGKQIHAAV-TK 239

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
           Y L     V N++++MY +C  +  A + F  L  K+ I+W+T+I+G   +    ++L L
Sbjct: 240 YGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGYERSD-SSESLSL 298

Query: 300 FSLMIINAVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYEIVPQM 348
           F  M      P+  TF ++ +AC+           HGG+V +G     A+          
Sbjct: 299 FFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVALIN-------- 350

Query: 349 QHYACVVDMYGRAGLLEEAEAFIREMP 375
                ++DMY + G + ++     +MP
Sbjct: 351 ----SLIDMYAKCGSISDSHKLFCDMP 373



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 135/283 (47%), Gaps = 8/283 (2%)

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           N I  ++ +  +  +C  LF ++P+R+VV+WT MI G+       +A ++F EM ++ E 
Sbjct: 48  NLIKSYFDKGLTREACN-LFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRS-EV 105

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMY-VKCGDVGIA 265
           +PN  T+ +VL AC  + ALS G   HS ++T++ +  S  V NA+++MY   C  +  A
Sbjct: 106 QPNAFTMSSVLKACKGMKALSCGALAHS-LATKHGIDRSVYVQNALLDMYAASCATMDDA 164

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
           + VFN +  K  +SW+T+I+G    G G   L  F  M++  V P+  +F     AC+  
Sbjct: 165 LSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASI 224

Query: 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 385
                G  +  A+ T Y +         ++DMY R   L +A+    E+  E     W  
Sbjct: 225 SSYSCGKQIHAAV-TKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGEL-TEKNLITWNT 282

Query: 386 LLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
           L+       + E      Q  +  +G     F   S T A A+
Sbjct: 283 LIAGYERSDSSESLSLFFQ--MGSEGYKPNCFTFTSITAACAN 323



 Score = 45.8 bits (107), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 89/197 (45%), Gaps = 6/197 (3%)

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD 311
           +I  Y   G    A  +FN +  +D ++W+ +I G        QA  +FS M+ + V P+
Sbjct: 49  LIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQPN 108

Query: 312 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA-GLLEEAEAF 370
             T  +++ AC     +  G  L  +++T + I   +     ++DMY  +   +++A + 
Sbjct: 109 AFTMSSVLKACKGMKALSCG-ALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSV 167

Query: 371 IREMPIEAEWSVWGALLNACRIHRNDEMFDRI--RQDLVNKKGVSVGTFALMSNTFAGAD 428
             ++P++   S W  L+ A   HR D     +  RQ L+   G +  +F++ +   A   
Sbjct: 168 FNDIPLKTAVS-WTTLI-AGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASIS 225

Query: 429 RWEDTNKIRDEIRRMGL 445
            +    +I   + + GL
Sbjct: 226 SYSCGKQIHAAVTKYGL 242


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 159/520 (30%), Positives = 271/520 (52%), Gaps = 71/520 (13%)

Query: 10  HYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF- 68
            +T T  L +C++        ++H+ V++ G    + + NS+L+ Y    D  +A  +F 
Sbjct: 164 QFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFE 223

Query: 69  ----------NSVV------------------FPD--VVSWTTIISGLSKCGFHKEAIDM 98
                     N++V                   PD  +VSW  +I+G ++ G   +A+ +
Sbjct: 224 RMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKL 283

Query: 99  FCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNL---------------- 138
           F  +     + P+  T+ SVLSAC++L + ++GK +HA+ LR                  
Sbjct: 284 FSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYA 343

Query: 139 -----------------NENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
                             + N+I   A+L+ Y++ G + S   +F  M  R+VV+WT MI
Sbjct: 344 KSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMI 403

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
            GY + G   EA+ +F+ M  T   EPN  TL  VLS C+S++ L +GK +H   + R  
Sbjct: 404 VGYEQNGRNDEAIDLFRSM-ITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCR-AIRSL 461

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDKISWSTVISGLAMNGCGRQALQLF 300
           L  S+ V NA+I MY + G    A ++F+ + + K+ I+W+++I  LA +G G +A+ LF
Sbjct: 462 LEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLF 521

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
             M+   V PD +T++ ++SACSH G V++G   +  +   ++I P+M HYAC+VD+  R
Sbjct: 522 EEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLAR 581

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           AGL  EA+ FIR MP+E +   WG+LL+ACR+H+N E+ +   + L++    + G ++ +
Sbjct: 582 AGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAI 641

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +N ++   RW D  +I    +   ++K+TG SW  +   I
Sbjct: 642 ANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKI 681



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 107/423 (25%), Positives = 189/423 (44%), Gaps = 71/423 (16%)

Query: 43  HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI 102
            ++F  NSLL  +     +  A  +F  +   D VSWT ++ GL++ G   EAI     +
Sbjct: 96  RNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDM 155

Query: 103 DVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCG-- 157
                 P   TL +VLS+C+   +  +G+ +H+  ++    + + + N++L+ Y +CG  
Sbjct: 156 TADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDS 215

Query: 158 -------------SLAS----------------CGYLFVKMPKRNVVSWTTMIGGYAERG 188
                        S++S                   LF  MP R++VSW  MI GY + G
Sbjct: 216 ETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNG 275

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
              +A+ +F  M       P+E T+ +VLSAC+++  +  GK VH+YI  R +++ ++ V
Sbjct: 276 LDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYI-LRTEMAYNSQV 334

Query: 249 GNAVINM---------------------------------YVKCGDVGIAIQVFNMLAYK 275
            NA+I+                                  YVK GD+  A ++F ++  +
Sbjct: 335 TNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNR 394

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG-LIL 334
           D ++W+ +I G   NG   +A+ LF  MI     P+  T  A++S C+    +D G  I 
Sbjct: 395 DVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIH 454

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
            +A+ ++ E    + +   ++ MY R+G    A     ++    E   W +++ A   H 
Sbjct: 455 CRAIRSLLEQSSSVSN--AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHG 512

Query: 395 NDE 397
             E
Sbjct: 513 QGE 515



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 139/297 (46%), Gaps = 44/297 (14%)

Query: 118 CSSLVSHKLGKAIHAHSLRN---------LNENNIILDNAILDFYIRCGSLASCGYLFVK 168
           C++L+S+    A  A  LR+         L   N+   N++L  + + G LA    +F +
Sbjct: 64  CNNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAE 123

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           MP+R+ VSWT M+ G    G   EA+    +M       P + TL NVLS+C+   A + 
Sbjct: 124 MPERDAVSWTVMVVGLNRAGRFGEAIKTLLDM-TADGFTPTQFTLTNVLSSCAVTQAGAV 182

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK------------- 275
           G+ VHS++  +  L     V N+V+NMY KCGD   A  VF  +  +             
Sbjct: 183 GRKVHSFV-VKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNT 241

Query: 276 ----------------DK--ISWSTVISGLAMNGCGRQALQLFSLMI-INAVFPDDVTFI 316
                           D+  +SW+ +I+G   NG   +AL+LFS M+  +++ PD+ T  
Sbjct: 242 HLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTIT 301

Query: 317 ALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIRE 373
           +++SAC++ G V  G  +  A     E+    Q    ++  Y ++G +E A   + +
Sbjct: 302 SVLSACANLGNVRIGKQV-HAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQ 357



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 100/240 (41%), Gaps = 25/240 (10%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M++C    N YT    L  C+         +IH   I         + N+++  Y     
Sbjct: 422 MITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGS 481

Query: 61  IFSAHQIFNSVVF-PDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLS 116
              A ++F+ V +  + ++WT++I  L++ G  +EA+ +F  +    V+P+  T V VLS
Sbjct: 482 FPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLS 541

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNA----ILDFYIRCGSLASCGYLFVKMP-K 171
           ACS       GK  +       NE+ I  + +    ++D   R G  +       +MP +
Sbjct: 542 ACSHAGFVNEGKRYYDQI---KNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVE 598

Query: 172 RNVVSWTTMIGGYAERGFC---KEAVSVFQEMEKTKEAEPNE----ATLVNVLSACSSIS 224
            + ++W +++        C   K A       EK    +PN     + + NV SAC   S
Sbjct: 599 PDAIAWGSLLSA------CRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWS 652


>gi|449435950|ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 606

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 154/469 (32%), Positives = 262/469 (55%), Gaps = 15/469 (3%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYV---- 56
           ML      N +T +  LKAC            H+   ++G    +++QN+LL  Y     
Sbjct: 100 MLRSEVQPNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCA 159

Query: 57  TVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVS 113
           T+ D  S   +FN +     VSWTT+I+G +  G     +  F  +   DV PN+ +   
Sbjct: 160 TMDDALS---VFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSI 216

Query: 114 VLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
              AC+S+ S+  GK IHA   +     +  + N+ILD Y RC  L      F ++ ++N
Sbjct: 217 AARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKN 276

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
           +++W T+I GY ER    E++S+F +M  ++  +PN  T  ++ +AC++++ LS G+ VH
Sbjct: 277 LITWNTLIAGY-ERSDSSESLSLFFQM-GSEGYKPNCFTFTSITAACANLAVLSCGQQVH 334

Query: 234 SYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
             I  R +D +V+ +  N++I+MY KCG +  + ++F  +  +D +SW+T++ G   +G 
Sbjct: 335 GGIVRRGFDKNVALI--NSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGY 392

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
           G++A++LF  M+ + + PD + F+ ++  CSH GLVD+GL  F++M   Y I P  + Y 
Sbjct: 393 GKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIYR 452

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           CVVD+ GRAG +EEA   +  MP E + SVWGALL AC+ ++   + +   Q +++++  
Sbjct: 453 CVVDLLGRAGRVEEAFQLVENMPFEPDESVWGALLGACKAYKLSNLGNLAAQRVLDRRPN 512

Query: 413 SVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
             GT+ L+S  +A   +W +  K+R  ++ M  KK+ G SWIE+   ++
Sbjct: 513 MAGTYLLLSKIYAAEGKWGEFAKMRKLMKGMNKKKEVGKSWIEIRNEVY 561



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 165/327 (50%), Gaps = 30/327 (9%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 120
           A  +FN +   DVV+WT +I G + C  + +A  MF  +   +V+PNA T+ SVL AC  
Sbjct: 62  ACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQPNAFTMSSVLKACKG 121

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFY-IRCGSLASCGYLFVKMPKRNVVSWTT 179
           + +   G   H+ + ++  + ++ + NA+LD Y   C ++     +F  +P +  VSWTT
Sbjct: 122 MKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIPLKTAVSWTT 181

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           +I G+  RG     +  F++M   ++  PN  +      AC+SIS+ S GK +H+ + T+
Sbjct: 182 LIAGFTHRGDGYSGLLAFRQM-LLEDVGPNSFSFSIAARACASISSYSCGKQIHAAV-TK 239

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
           Y L     V N++++MY +C  +  A + F  L  K+ I+W+T+I+G   +    ++L L
Sbjct: 240 YGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGYERSD-SSESLSL 298

Query: 300 FSLMIINAVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYEIVPQM 348
           F  M      P+  TF ++ +AC+           HGG+V +G     A+          
Sbjct: 299 FFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVALIN-------- 350

Query: 349 QHYACVVDMYGRAGLLEEAEAFIREMP 375
                ++DMY + G + ++     +MP
Sbjct: 351 ----SLIDMYAKCGSISDSHKLFCDMP 373



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 135/283 (47%), Gaps = 8/283 (2%)

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           N I  ++ +  +  +C  LF ++P+R+VV+WT MI G+       +A ++F EM ++ E 
Sbjct: 48  NLIKSYFDKGLTREACN-LFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRS-EV 105

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMY-VKCGDVGIA 265
           +PN  T+ +VL AC  + ALS G   HS ++T++ +  S  V NA+++MY   C  +  A
Sbjct: 106 QPNAFTMSSVLKACKGMKALSCGALAHS-LATKHGIDRSVYVQNALLDMYAASCATMDDA 164

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
           + VFN +  K  +SW+T+I+G    G G   L  F  M++  V P+  +F     AC+  
Sbjct: 165 LSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASI 224

Query: 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 385
                G  +  A+ T Y +         ++DMY R   L +A+    E+  E     W  
Sbjct: 225 SSYSCGKQIHAAV-TKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGEL-TEKNLITWNT 282

Query: 386 LLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
           L+       + E      Q  +  +G     F   S T A A+
Sbjct: 283 LIAGYERSDSSESLSLFFQ--MGSEGYKPNCFTFTSITAACAN 323



 Score = 45.8 bits (107), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 89/197 (45%), Gaps = 6/197 (3%)

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD 311
           +I  Y   G    A  +FN +  +D ++W+ +I G        QA  +FS M+ + V P+
Sbjct: 49  LIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQPN 108

Query: 312 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA-GLLEEAEAF 370
             T  +++ AC     +  G  L  +++T + I   +     ++DMY  +   +++A + 
Sbjct: 109 AFTMSSVLKACKGMKALSCG-ALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSV 167

Query: 371 IREMPIEAEWSVWGALLNACRIHRNDEMFDRI--RQDLVNKKGVSVGTFALMSNTFAGAD 428
             ++P++   S W  L+ A   HR D     +  RQ L+   G +  +F++ +   A   
Sbjct: 168 FNDIPLKTAVS-WTTLI-AGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASIS 225

Query: 429 RWEDTNKIRDEIRRMGL 445
            +    +I   + + GL
Sbjct: 226 SYSCGKQIHAAVTKYGL 242


>gi|297833228|ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330336|gb|EFH60755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 547

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 155/460 (33%), Positives = 251/460 (54%), Gaps = 15/460 (3%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    S +++TF   LKACS     Q    +H  V++ G   ++++   LLH Y+   +
Sbjct: 97  MLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGE 156

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSA 117
           +    ++F  +   +VV+W ++ISG        +AI+ F     I VKPN   +V +L A
Sbjct: 157 VNWGLRVFEDIPKLNVVAWGSLISGFVNNNRFSDAIEAFREMQSIGVKPNETIMVDLLVA 216

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C        G+    +      E N+IL  +++D Y +CG + +  YLF  MP+RN+VSW
Sbjct: 217 C--------GRCFDPYCQSKF-EFNVILATSLIDMYAKCGDMRTARYLFDGMPERNLVSW 267

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
            ++I GY++ G  +EA+ +F +M     A P++ T  +V+ A         G+ +H+Y+S
Sbjct: 268 NSIITGYSQNGDAEEAMCMFSDMLDLGIA-PDKVTFFSVIRASMIQGCSQLGQTIHAYVS 326

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
               +  + +V  A++NMY K G+   A ++F  L  KD I+W+ VI GLA +G G +AL
Sbjct: 327 KTGFVKDAAIVC-ALVNMYAKTGNAESAKKMFEDLEKKDTIAWTVVIIGLASHGHGNKAL 385

Query: 298 QLFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
            +F  M       PD +T++ ++ ACSH GLV++G   F  M  +Y + P ++HY C+VD
Sbjct: 386 SIFQRMQEEGNATPDGITYLGVLYACSHIGLVEEGQRYFAEMRDLYGLEPTVEHYGCMVD 445

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGT 416
           +  RAG  EEAE  ++ MP++   ++WGALLN C IH N ++ DRIR  +   + +  G 
Sbjct: 446 ILSRAGRFEEAERLVKTMPVQPTANIWGALLNGCEIHENLDLADRIRSMVSESEELGSGI 505

Query: 417 FALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           + L+SN +A A RW D   IR+ ++   + K    S +E 
Sbjct: 506 YVLLSNIYAKAGRWADVKLIRESMKSKRVDKLLAHSSVET 545



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 175/366 (47%), Gaps = 28/366 (7%)

Query: 25  PHQKALEIHAHVIEYGHLHDIFIQNS----------LLHFYVTVKDIFS---AHQIFNSV 71
           P    LE    ++E   LH + I++S          L+ F  T  +  +   A  +F S+
Sbjct: 7   PILSQLENCRSMVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESI 66

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGK 128
             P V  W ++I G S      +A+  +  +  K   P+  T   VL ACS L   + G 
Sbjct: 67  DCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGS 126

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H   ++   E N+ +   +L  Y+ CG +     +F  +PK NVV+W ++I G+    
Sbjct: 127 CVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNWGLRVFEDIPKLNVVAWGSLISGFVNNN 186

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
              +A+  F+EM+     +PNE  +V++L AC        G+    Y  ++++ +V  ++
Sbjct: 187 RFSDAIEAFREMQSIG-VKPNETIMVDLLVAC--------GRCFDPYCQSKFEFNV--IL 235

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
             ++I+MY KCGD+  A  +F+ +  ++ +SW+++I+G + NG   +A+ +FS M+   +
Sbjct: 236 ATSLIDMYAKCGDMRTARYLFDGMPERNLVSWNSIITGYSQNGDAEEAMCMFSDMLDLGI 295

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD VTF ++I A    G    G  +   +S     V        +V+MY + G  E A+
Sbjct: 296 APDKVTFFSVIRASMIQGCSQLGQTIHAYVSKT-GFVKDAAIVCALVNMYAKTGNAESAK 354

Query: 369 AFIREM 374
               ++
Sbjct: 355 KMFEDL 360



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 128/289 (44%), Gaps = 19/289 (6%)

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCG 163
           +K +   ++S L  C S+V       +H   +++    N+I  + ++DF   C    +  
Sbjct: 1   MKKHYKPILSQLENCRSMVELN---QLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLS 57

Query: 164 Y---LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
           Y   +F  +   +V  W +MI GY+      +A+  +QEM + K   P+  T   VL AC
Sbjct: 58  YARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLR-KGYSPDYFTFPYVLKAC 116

Query: 221 SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
           S +  + FG  VH ++  +    V+  V   +++MY+ CG+V   ++VF  +   + ++W
Sbjct: 117 SGLRDIQFGSCVHGFV-VKTGFEVNMYVSTCLLHMYMCCGEVNWGLRVFEDIPKLNVVAW 175

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340
            ++ISG   N     A++ F  M    V P++   + L+ AC        G        +
Sbjct: 176 GSLISGFVNNNRFSDAIEAFREMQSIGVKPNETIMVDLLVAC--------GRCFDPYCQS 227

Query: 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
            +E    +     ++DMY + G +  A      MP E     W +++  
Sbjct: 228 KFEF--NVILATSLIDMYAKCGDMRTARYLFDGMP-ERNLVSWNSIITG 273


>gi|242076082|ref|XP_002447977.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
 gi|241939160|gb|EES12305.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
          Length = 772

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 143/433 (33%), Positives = 257/433 (59%), Gaps = 16/433 (3%)

Query: 33  HAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFH 92
           HA +++     ++ + N+L+  Y   + + +A ++F  +   D  SW  +I G  K G  
Sbjct: 343 HAVIMKRNFGDNVLVGNALISMYGKFELVDNAGRVFRLLHQRDADSWNLMIVGYCKAGCD 402

Query: 93  KEAIDMFCGIDVKP------NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
            + ++++  +  +       +AN+LVS +S+CS LV  +LG++ H +S+++  + +  + 
Sbjct: 403 VKCLELYREMQFRDTYEFLCDANSLVSAISSCSRLVELRLGRSAHCYSIKHWLDEDSSVA 462

Query: 147 NAILDFYIRCGSLA-SCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
           N ++  Y RCG    +C    +   K +VV+W T+I  YA  G    AVS++ +M  T+ 
Sbjct: 463 NVLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSYAHLGHSNTAVSLYDQM-LTEG 521

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYIST---RYDLSVSNLVGNAVINMYVKCGDV 262
             PN  TL+ V+SAC+++ AL  G+ +HSY+      YD+S++     A+I+MY KCG +
Sbjct: 522 LTPNSTTLITVISACANLVALERGEKIHSYVKEMGWDYDVSINT----ALIDMYAKCGQL 577

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
           G A ++F+ +   D ++W+ +ISG  M+G  +QAL+LF  M   ++ P+ VTF+A++SAC
Sbjct: 578 GTARRIFDSMLQHDVVAWNVMISGYGMHGEAKQALELFGKMEGGSIKPNGVTFLAILSAC 637

Query: 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
            H GL+++G  LF  M   Y + P ++HYAC+VD+ G++G L+EAE  +  MP+E +  +
Sbjct: 638 CHSGLLEEGRQLFTRMGK-YSLEPNLKHYACMVDLLGKSGHLQEAEDMVLAMPVEPDGGI 696

Query: 383 WGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442
           WG LL+AC++H + EM  RI +        + G + L+SN++  A +W++  K+R+ ++ 
Sbjct: 697 WGTLLSACKLHDDFEMGLRIAKKAFASDAENEGYYILISNSYGSAKKWDEIEKLREAMKN 756

Query: 443 MGLKKKTGCSWIE 455
            G++K  G S ++
Sbjct: 757 HGVQKGAGWSAVD 769



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 103/373 (27%), Positives = 188/373 (50%), Gaps = 19/373 (5%)

Query: 32  IHAHVIEYGHL----HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGL- 86
           +HA+ + YG L      + + +SL++ Y     +  A ++F  +   DVV+WT ++SG  
Sbjct: 132 VHAYCVRYGLLAVDGGSVAVPSSLVYMYARCGVVRDAVKLFEEMRERDVVAWTAVVSGCV 191

Query: 87  --SKCG----FHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNE 140
              +CG    +  E + +      +PN+ T+ S L AC  L     G+ +H ++++    
Sbjct: 192 RNGECGDGLRYLVEMVRLAGDGKARPNSRTMESGLEACGVLDELNSGRCLHGYAVKVGVG 251

Query: 141 NNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEM 200
           ++ ++ +A+   Y +C S      LF ++P+++VVSWT++IG Y  RG  +EA+ +FQEM
Sbjct: 252 DSPMVISALFSMYSKCHSTEDACSLFPELPEKDVVSWTSLIGIYCWRGLIREAMELFQEM 311

Query: 201 EKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCG 260
            ++   +P++  +  +LS   +   +  GK  H+ I  R +   + LVGNA+I+MY K  
Sbjct: 312 MESG-LQPDDVLVSCLLSGLGNSGNVHGGKAFHAVIMKR-NFGDNVLVGNALISMYGKFE 369

Query: 261 DVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP---DDVTFIA 317
            V  A +VF +L  +D  SW+ +I G    GC  + L+L+  M     +    D  + ++
Sbjct: 370 LVDNAGRVFRLLHQRDADSWNLMIVGYCKAGCDVKCLELYREMQFRDTYEFLCDANSLVS 429

Query: 318 LISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV-VDMYGRAGLLEEAEAFIREMPI 376
            IS+CS   LV+  L       ++   + +    A V + MYGR G  + A        +
Sbjct: 430 AISSCSR--LVELRLGRSAHCYSIKHWLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKL 487

Query: 377 EAEWSVWGALLNA 389
           + +   W  L+++
Sbjct: 488 KGDVVTWNTLISS 500



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 86/173 (49%), Gaps = 3/173 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML+   + N  T    + AC+     ++  +IH++V E G  +D+ I  +L+  Y     
Sbjct: 517 MLTEGLTPNSTTLITVISACANLVALERGEKIHSYVKEMGWDYDVSINTALIDMYAKCGQ 576

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSA 117
           + +A +IF+S++  DVV+W  +ISG    G  K+A+++F    G  +KPN  T +++LSA
Sbjct: 577 LGTARRIFDSMLQHDVVAWNVMISGYGMHGEAKQALELFGKMEGGSIKPNGVTFLAILSA 636

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP 170
           C      + G+ +     +   E N+     ++D   + G L     + + MP
Sbjct: 637 CCHSGLLEEGRQLFTRMGKYSLEPNLKHYACMVDLLGKSGHLQEAEDMVLAMP 689


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 141/420 (33%), Positives = 243/420 (57%), Gaps = 6/420 (1%)

Query: 45  IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV 104
           + +  +LL  Y     +  A ++F+++   + V+W+ +I G   C    +A  +F  +  
Sbjct: 158 VLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLA 217

Query: 105 KP----NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLA 160
           +     +  ++ S L AC+SL   ++G+ +HA   ++    ++   N++L  Y + G + 
Sbjct: 218 QGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLID 277

Query: 161 SCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
               LF +M  ++ VS++ ++ GY + G  +EA  VF++M+     EP+ AT+V+++ AC
Sbjct: 278 QAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQAC-NVEPDAATMVSLIPAC 336

Query: 221 SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
           S ++AL  G+  H  +  R  L+    + NA+I+MY KCG + ++ QVFNM+  +D +SW
Sbjct: 337 SHLAALQHGRCSHGSVIIR-GLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSW 395

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340
           +T+I+G  ++G G++A  LF  M      PD VTFI L+SACSH GLV +G   F  M  
Sbjct: 396 NTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGH 455

Query: 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFD 400
            Y + P+M+HY C+VD+  R G L+EA  FI+ MP+ A+  VW ALL ACR+++N ++  
Sbjct: 456 GYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGK 515

Query: 401 RIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           ++ + +        G F L+SN ++ A R+++  ++R   +  G KK  GCSWIE+N S+
Sbjct: 516 KVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSL 575



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/413 (28%), Positives = 203/413 (49%), Gaps = 28/413 (6%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    + N+YTF  ALKACS    H     IH H I  G   D+F+  +LL  YV    
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID-----VKPNANTLVSVL 115
           +  A  IF ++   D+V+W  +++G +  G +  A+     +      ++PNA+TLV++L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 116 SACSSLVSHKLGKAIHAHSLR-----NLNE-----NNIILDNAILDFYIRCGSLASCGYL 165
              +   +   G ++HA+ +R     N N      + ++L  A+LD Y +CGSL     +
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
           F  MP RN V+W+ +IGG+       +A  +F+ M        +  ++ + L AC+S+  
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDH 240

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285
           L  G+ +H+ ++ +  +      GN++++MY K G +  AI +F+ +A KD +S+S ++S
Sbjct: 241 LRMGEQLHALLA-KSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVS 299

Query: 286 GLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH-----GGLVDQGLILFKAMST 340
           G   NG   +A  +F  M    V PD  T ++LI ACSH      G    G ++ + +++
Sbjct: 300 GYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLAS 359

Query: 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
              I   +      +DMY + G ++ +      MP   +   W  ++    IH
Sbjct: 360 ETSICNAL------IDMYAKCGRIDLSRQVFNMMP-SRDIVSWNTMIAGYGIH 405



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 94/231 (40%), Gaps = 18/231 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M +C    +  T    + ACS     Q     H  VI  G   +  I N+L+  Y     
Sbjct: 317 MQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGR 376

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           I  + Q+FN +   D+VSW T+I+G    G  KEA  +F  ++     P+  T + +LSA
Sbjct: 377 IDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSA 436

Query: 118 C--SSLV---SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKR 172
           C  S LV    H      H + L    E+ I +    +D   R G L         MP R
Sbjct: 437 CSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICM----VDLLSRGGFLDEAYEFIQSMPLR 492

Query: 173 -NVVSWTTMIGG---YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
            +V  W  ++G    Y      K+   + QE+    E   N   L N+ SA
Sbjct: 493 ADVRVWVALLGACRVYKNIDLGKKVSRMIQEL--GPEGTGNFVLLSNIYSA 541


>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
          Length = 914

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 156/463 (33%), Positives = 246/463 (53%), Gaps = 53/463 (11%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S+ +    +AL A  +A        +H+HV++ G + D F+ N+L+  Y        A +
Sbjct: 448 SFTYSFLIKALSAAGVA----PVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARK 503

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKL 126
           +F+ +   DVVSW T ++ + + G    A  +F   D  P                    
Sbjct: 504 VFDEMPERDVVSWNTAMAAMVREGELAGARKLF---DEMP-------------------- 540

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
                        E + +  N ILD Y + G + +   LF +MP+RNVVSW+TM+ GY +
Sbjct: 541 -------------EKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCK 587

Query: 187 RGFCKEAVSVFQEME-----------KTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           +G  + A  +F +M            K    E + A +V++L+AC+   +LS GK +H Y
Sbjct: 588 KGDLEMARVIFDKMPGKNLVTWTIMMKEASVELDVAAVVSILAACAESGSLSLGKRIHRY 647

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM-LAYKDKISWSTVISGLAMNGCGR 294
           +  R +L  S  V NA+I+M+ KCG V  A  VF+     KD +SW+++I G AM+G G 
Sbjct: 648 VRKR-NLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGD 706

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
           +AL+LF+ M      PD VT I ++SAC+H G VD+G   F  M   Y I+PQ++HY C+
Sbjct: 707 KALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRYFSNMERDYGIMPQIEHYGCM 766

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414
           +D+ GR GL++EA   I+ MP E    +WG+LL+ACR+H+N E  +    +L   +  + 
Sbjct: 767 IDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNA 826

Query: 415 GTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           G +A++SN +A A +W D  K R +++  G +K  G SW+E+N
Sbjct: 827 GNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVELN 869



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 81/406 (19%), Positives = 174/406 (42%), Gaps = 70/406 (17%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP--DVVSWTTIISGLSK 88
           E+HA V++ G   +      L+  Y  ++ + S+ ++F+++  P  D     T++   + 
Sbjct: 370 ELHAQVLKQGLHLNPRAAARLVSAYALLRLLPSSRRVFDAIRDPHADAFLANTMLRAYAL 429

Query: 89  CGFHKEAIDMFCGIDVKPN--ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
            G  ++A+  F  +  + +   + L+  LSA          +A+H+H ++  +  +  + 
Sbjct: 430 GGAPRDALAAFSAMPRRDSFTYSFLIKALSAAGVAPV----RAVHSHVVKLGSVEDTFVG 485

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           NA++D Y + G  +    +F +MP+R+VVSW T +      G    A  +F EM      
Sbjct: 486 NALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGARKLFDEM------ 539

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
            P + T+                    S+              N +++ Y K G+V  A 
Sbjct: 540 -PEKDTV--------------------SW--------------NTILDGYTKAGEVEAAF 564

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF-----------SLMIINAVFPDDV-T 314
           ++F  +  ++ +SWST++SG    G    A  +F           ++M+  A    DV  
Sbjct: 565 ELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPGKNLVTWTIMMKEASVELDVAA 624

Query: 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC--VVDMYGRAGLLEEAEAFIR 372
            +++++AC+  G +  G  + +    V +       + C  ++DM+ + G +  A+    
Sbjct: 625 VVSILAACAESGSLSLGKRIHR---YVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFD 681

Query: 373 EMPIEAEWSVWGALLNACRIHRND----EMFDRIRQDLVNKKGVSV 414
              ++ +   W +++    +H +     E+F +++Q   N   V++
Sbjct: 682 TETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTM 727


>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
 gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
          Length = 933

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 156/461 (33%), Positives = 250/461 (54%), Gaps = 39/461 (8%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    S   YTF   +KAC L    + A  +H HV   G    +F+Q SL+ FY ++  
Sbjct: 71  MLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGR 130

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSS 120
           I  + ++F+ +   DV +WTT++SGL + G    A  +F   D+ P+             
Sbjct: 131 IEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLF---DMMPD------------- 174

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
                          RNL   N ++D      Y R   +     LF +MP R+++SWTTM
Sbjct: 175 ---------------RNLATWNTLIDG-----YARLREVDVAELLFNQMPARDIISWTTM 214

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           I  Y++    +EA+ VF EM K     P+E T+  V+SAC+ + AL  GK +H YI  ++
Sbjct: 215 INCYSQNKRFREALGVFNEMAK-HGISPDEVTMATVISACAHLGALDLGKEIHYYI-MQH 272

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
             ++   +G+A+I+MY KCG +  ++ +F  L  K+   W++VI GLA++G   +AL +F
Sbjct: 273 GFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMF 332

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
             M    + P+ VTF++++SAC+H GL+++G   F +M+  + I P ++HY C+VD+  +
Sbjct: 333 DKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIPPGVEHYGCMVDLLSK 392

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           AGLLEEA   IR M +E    +WGALL+ C++HRN E+       L+  +  + G + L+
Sbjct: 393 AGLLEEALQLIRTMKLEPNAVIWGALLSGCKLHRNLEIAQVAANKLMVLEPGNSGYYTLL 452

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGLKKK-TGCSWIEVNPSI 460
            N  A  +RW +  KIR  ++  G++K+  G SWIE+   +
Sbjct: 453 VNMNAEVNRWGEAAKIRLTMKEQGVEKRCPGSSWIEMESQV 493


>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
          Length = 615

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 154/492 (31%), Positives = 261/492 (53%), Gaps = 36/492 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    S + ++ +  LKACS     ++ ++ H  + + G   D+F+QN L+  Y+    
Sbjct: 114 MLKNGVSVDKFSLSLVLKACSRLGFVKEGMQXHGFLRKTGIWSDLFLQNCLIGLYLKCGC 173

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPN-ANTLVSVLSACS 119
           +  A Q+F+ +   D VS+ ++I G  KCG  + A ++F   D+ P+    L+S  S  +
Sbjct: 174 LGFARQVFDRMSQRDSVSYNSMIDGYVKCGLIESARELF---DLMPSEKKNLISWNSMIN 230

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
                  G  I ++    + E ++I  N+++D Y++ G +     LF KMP+R+VV+W T
Sbjct: 231 GYAQRADGVDIASNLFDEMPEKDLISWNSLIDGYVKHGRIEDAKDLFDKMPRRDVVTWAT 290

Query: 180 MIGGYAERGFCK-------------------------------EAVSVFQEMEKTKEAEP 208
           M+ GYA+ GF                                 EA+ +F +MEK     P
Sbjct: 291 MVDGYAKLGFVHQAKSLFDQMPQRDVVAYNSMMAGYVQNRYHMEAIDIFNDMEKESHLSP 350

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           +E TLV VLSA + +  LS    +H Y   +  L +   +G A+I+MY KCG +  A+ V
Sbjct: 351 DETTLVIVLSAIAQLGRLSKAMDMHLYTVEKKFL-LGGKLGVALIDMYSKCGSIQQAMGV 409

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F  +  K    W+ +I GLA++G G  A  +   +   ++ PDD+TF+ +++ACSH GLV
Sbjct: 410 FERIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLV 469

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
            +GL+ F+ M   ++I P++QHY C+VD+  R+G +E A+  I EMPIE    +W   L 
Sbjct: 470 KEGLLCFELMKRKHKIEPRLQHYGCMVDILSRSGRIELAKNLIEEMPIEPNDVIWRTFLT 529

Query: 389 ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
           AC  H+  E  + + + L+ + G +  ++ L+SN +A    W++  ++R  ++   ++K 
Sbjct: 530 ACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYASLGMWKEVRRVRTMMKERKIQKI 589

Query: 449 TGCSWIEVNPSI 460
            GCSWIE++ S+
Sbjct: 590 PGCSWIELDGSV 601


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 150/496 (30%), Positives = 265/496 (53%), Gaps = 44/496 (8%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK- 59
           ML+     +H  F   LK+C+L         +H ++I  G   D++  N+L++ Y  ++ 
Sbjct: 97  MLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRF 156

Query: 60  ------------DIF-------------------SAHQIFNSVVFPDVVSWTTIISGLSK 88
                       ++F                   S  +IF  +   D+VSW TII+G ++
Sbjct: 157 LEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNAR 216

Query: 89  CGFHKEAIDM---FCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
            G ++E + M     G ++KP++ TL SVL   +  V    GK IH  S+R   + +I +
Sbjct: 217 NGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYV 276

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            ++++D Y +C  +A    +F  + +R+ +SW ++I G  + G   E +  F++M   K 
Sbjct: 277 ASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAK- 335

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
            +P   +  +++ AC+ ++ L  GK +H YI TR     +  + +++++MY KCG++  A
Sbjct: 336 IKPKSYSFSSIMPACAHLTTLHLGKQLHGYI-TRNGFDENIFIASSLVDMYAKCGNIRTA 394

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
            Q+F+ +  +D +SW+ +I G A++G    A++LF  M    +        A+++ACSHG
Sbjct: 395 KQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGI-------KAVLTACSHG 447

Query: 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 385
           GLVD+    F +M+  + I P ++HYA V D+ GRAG LEEA  FI  M I    S+W  
Sbjct: 448 GLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWAT 507

Query: 386 LLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445
           LL+ACR+H+N +M +++   ++     + G + L++N ++ A RW++  K R  +RR+G+
Sbjct: 508 LLSACRVHKNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGI 567

Query: 446 KKKTGCSWIEVNPSIF 461
           +K   CSWIEV   ++
Sbjct: 568 RKTPACSWIEVKNKVY 583



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/422 (24%), Positives = 198/422 (46%), Gaps = 45/422 (10%)

Query: 12  TFTQALKACSLAHP-----HQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           T T+AL    L +P       +A ++HA V+++     +   + LL  Y  +  +  + +
Sbjct: 3   TSTEALVKALLRNPLSIKSRSQAQQLHAQVLKF-QASSLCNLSLLLSIYSHINLLHDSLR 61

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVS 123
           +FN++ FP  ++W ++I   +  G   +++  F G+    + P+ N   SVL +C+ L+ 
Sbjct: 62  LFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMD 121

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGY------------------- 164
             LG+++H + +R   + ++   NA+++ Y +   L   G                    
Sbjct: 122 LNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSV 181

Query: 165 -------------LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEA 211
                        +F  MP++++VSW T+I G A  G  +E + + +EM      +P+  
Sbjct: 182 RTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGAN-LKPDSF 240

Query: 212 TLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 271
           TL +VL   +    +S GK +H   S R  L     V +++I+MY KC  V  + +VF +
Sbjct: 241 TLSSVLPLIAENVDISRGKEIHG-CSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTL 299

Query: 272 LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
           L  +D ISW+++I+G   NG   + L+ F  M++  + P   +F +++ AC+H   +  G
Sbjct: 300 LTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLG 359

Query: 332 LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACR 391
             L   + T       +   + +VDMY + G +  A+     M +    S W A++  C 
Sbjct: 360 KQLHGYI-TRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVS-WTAMIMGCA 417

Query: 392 IH 393
           +H
Sbjct: 418 LH 419


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 162/481 (33%), Positives = 266/481 (55%), Gaps = 46/481 (9%)

Query: 21  SLAHPHQK----ALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           SL H ++K       IH H I+     D F+   LL  Y  V  I  A ++F     P+V
Sbjct: 31  SLLHKNRKNPKHVQSIHCHAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNV 90

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAH 133
             +T++I G    G + +AI++FC +    V  +   + ++L AC    +   GK +H  
Sbjct: 91  YLYTSLIDGFVSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGL 150

Query: 134 SLRNLNENNIILDNAI----LDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
            L++     + LD +I    ++ Y +CG L     +F  MP+R+VV+ T MIG   + G 
Sbjct: 151 VLKS----GLGLDRSIALKLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGM 206

Query: 190 CKEAVSVFQEME------------------------------KTKEAEPNEATLVNVLSA 219
            +EA+ VF EM                               + K  EPNE T V VLSA
Sbjct: 207 VEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSA 266

Query: 220 CSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS 279
           C+ + AL  G+++H+Y+  +  + V+  V  A+INMY +CGD+  A  +F+ +  KD  +
Sbjct: 267 CAQLGALELGRWIHAYMR-KCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVST 325

Query: 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMS 339
           ++++I GLA++G   +A++LFS M+   V P+ +TF+ +++ACSHGGLVD G  +F++M 
Sbjct: 326 YNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESME 385

Query: 340 TVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMF 399
            ++ I P+++HY C+VD+ GR G LEEA  FI  M +EA+  +  +LL+AC+IH+N  M 
Sbjct: 386 MIHGIEPEVEHYGCMVDILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSACKIHKNIGMG 445

Query: 400 DRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPS 459
           +++ + L     +  G+F ++SN +A   RW    ++R+++ + G+ K+ GCS IEVN +
Sbjct: 446 EKVAKLLSEHYRIDSGSFIMLSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEVNNA 505

Query: 460 I 460
           I
Sbjct: 506 I 506



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 119/255 (46%), Gaps = 35/255 (13%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           ++Y  T  LKAC L        E+H  V++ G   D  I   L+  Y     +  A ++F
Sbjct: 124 DNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLEDARKMF 183

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---------C----------------GID 103
           + +   DVV+ T +I     CG  +EAI++F         C                G++
Sbjct: 184 DGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLE 243

Query: 104 ---------VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
                    V+PN  T V VLSAC+ L + +LG+ IHA+  +   E N  +  A+++ Y 
Sbjct: 244 VFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFVAGALINMYS 303

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           RCG +     LF  +  ++V ++ +MIGG A  G   EAV +F EM K +   PN  T V
Sbjct: 304 RCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKER-VRPNGITFV 362

Query: 215 NVLSACSSISALSFG 229
            VL+ACS    +  G
Sbjct: 363 GVLNACSHGGLVDLG 377


>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
          Length = 613

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 168/474 (35%), Positives = 251/474 (52%), Gaps = 54/474 (11%)

Query: 27  QKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV--KDIFSAHQIFNSVVFPDVVSWTTIIS 84
           Q   ++HA +I+   + D      LL F      +D+  A +IF S+  P+  S+ T+I 
Sbjct: 2   QDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLIR 61

Query: 85  GLSKCGFHKEA----IDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIH--------- 131
            LS+     +A    I+M     V+PN  T  SV  AC      + G+ +H         
Sbjct: 62  ALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLD 121

Query: 132 ---------------------AHSL----------------RNLNENNIILDNAILDFYI 154
                                AH L                +   + +++L N ++D Y+
Sbjct: 122 SDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYV 181

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           R G L     LF +MP+R+VVSW  MI GYA+ G  KEAV VF+EM+   E  PN  TLV
Sbjct: 182 RIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMA-EVPPNYVTLV 240

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
           +VL A S + AL  GK+VH Y + R ++ V +++G+A+I+MY KCG +  A+QVF  L  
Sbjct: 241 SVLPAMSRLGALELGKWVHLY-AVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPK 299

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           ++ ++WST+I+GLAM+G  +  L  F  M    V P DVT+I L+SACSH GLV++G   
Sbjct: 300 RNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWF 359

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F  M  V  + P+++HY C+VD+ GRAGLLEE+E  I  MPI+ +  +W ALL AC++H 
Sbjct: 360 FDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHG 419

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
           N EM  R+ + L+       G++  +SN +A    WE   K+R  ++ M +  +
Sbjct: 420 NVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVSAR 473



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 120/470 (25%), Positives = 205/470 (43%), Gaps = 98/470 (20%)

Query: 4   CPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFS 63
           C    N +TF    KAC  A   ++  ++H   +++G   D F+ ++++  Y++   +  
Sbjct: 83  CSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMED 142

Query: 64  AHQIFNSVVFPD----------------------------------------------VV 77
           AH++F   VF D                                              VV
Sbjct: 143 AHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVV 202

Query: 78  SWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHS 134
           SW  +I+G ++ G  KEA+++F  +   +V PN  TLVSVL A S L + +LGK +H ++
Sbjct: 203 SWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYA 262

Query: 135 LRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAV 194
           +RN    + +L +A++D Y +CGS+     +F  +PKRNVV+W+T+I G A  G  K+ +
Sbjct: 263 VRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTL 322

Query: 195 SVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVIN 254
             F++ME+     P++ T + +LSACS    ++ G++   ++     + VS L       
Sbjct: 323 DHFEDMERAG-VMPSDVTYIGLLSACSHAGLVNEGRWFFDHM-----VRVSGL------- 369

Query: 255 MYVKCGDVGIAIQVFNMLAYKDKIS-WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDV 313
                               + +I  +  ++  L   G   ++ +L   M I    PDDV
Sbjct: 370 --------------------EPRIEHYGCMVDLLGRAGLLEESEELILNMPIK---PDDV 406

Query: 314 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQ-HYACVVDMYGRAGLLE---EAEA 369
            + AL+ AC   G V+ G    +    + E+ P     Y  + ++Y   G  E   +   
Sbjct: 407 IWKALLGACKMHGNVEMGK---RVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRL 463

Query: 370 FIREMPIEAEWSVWGA----LLNACRIHRNDEM-FDRIRQDLVNKKGVSV 414
            ++EM + A W    A    L  A   H+  E  F  +R  L  K  +S 
Sbjct: 464 MMKEMDVSARWHPEDACXDMLEEAPEFHQTKETRFKAVRAPLGPKXXIST 513


>gi|125529041|gb|EAY77155.1| hypothetical protein OsI_05121 [Oryza sativa Indica Group]
          Length = 916

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 155/458 (33%), Positives = 248/458 (54%), Gaps = 13/458 (2%)

Query: 2   LSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDI 61
           LSC  S    T    + +C           +H+ +++YG L  +   NSL+H Y+   D 
Sbjct: 466 LSCTLS----TVVAVIPSCFCPQDLNFGKSVHSFILKYGFLTGVSAANSLIHMYICCGDS 521

Query: 62  FSAHQIFNSVV-FPDVVSWTTIISGLSKCGFHKEAIDMF----CGIDVKPNANTLVSVLS 116
            +A  +  S+    D++SW T I G  + G + +A++ F      + + P++ TLVSVLS
Sbjct: 522 LAAFSLLESITPMSDIISWNTAIVGCVQNGLYGDALEAFQFMHSTLTLNPDSITLVSVLS 581

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
            C +L    LGK+IH  +L+ L E N+ + NA+L  Y R G   S   +F  +  RN+ S
Sbjct: 582 VCGNLKLQSLGKSIHCMALKRLIEFNLRVKNALLTMYFRFGDTESAELIFSSLVGRNLCS 641

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           W  MI G+A+     E +   Q  +K +  EPNE ++V ++ AC+ +  L  GK +H ++
Sbjct: 642 WNCMISGFAQN---NEGLRALQFYKKMEYFEPNEISIVGIICACTQLGDLRQGKNIHGHV 698

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
             R+ L  +  +  ++++MY KCG + I+I+VF   A K    W+++IS    +G G ++
Sbjct: 699 -VRFGLQTNVFISASLVDMYSKCGRLDISIRVFESSAEKSIACWNSMISAFGFHGLGLKS 757

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
           +++F  M  + V     TFIAL+SACSH GL D+GL  +  M   + I+P  +H+ CVVD
Sbjct: 758 IEIFWKMNNSGVKATRSTFIALLSACSHSGLTDEGLKYYHLMIEHFGIIPTPEHHVCVVD 817

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGT 416
           M GRAG L+EA  F+  +P +    VWGALL+AC      +M + + + L+  +  + G 
Sbjct: 818 MLGRAGRLQEAHKFVESLPSKQAHGVWGALLSACSKKSELKMCESVAKHLLCLEPENSGY 877

Query: 417 FALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           +  MSN +A  D W    ++RD ++  GL K  G S I
Sbjct: 878 YVTMSNLYAYQDMWSGAVQVRDILQDKGLMKPRGRSII 915



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 197/399 (49%), Gaps = 13/399 (3%)

Query: 12  TFTQALKACSLAHPHQK--ALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN 69
           +  +AL AC  A   +      +H   ++   + D  ++ S++  Y  V+D+ SA Q+F+
Sbjct: 63  SIVRALGACRGASREEADGVAALHCAALKSAAVLDPPVRTSVITAYSRVRDVCSALQVFD 122

Query: 70  SVVFPDVVSWTTIISGLSKCGFHKEAIDMF-CGIDVKP--NANTLVSVLSACSSLVSHKL 126
               PD++ W   IS L+    + +A+ +F   +DV    ++ ++V +LS  S   S + 
Sbjct: 123 EAAAPDLILWNAAISALTLNCRYGDAVVLFRWMVDVLGVFDSTSMVIMLSGASRARSLEH 182

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           G A H  +L+   + ++ L N ++D Y +CG   S   +F +MP R+  SW +M+ G   
Sbjct: 183 GIAFHGMALKRRLDTDLSLWNTLMDMYAKCGDFYSSEVVFQRMPYRDTTSWNSMVSGSLF 242

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL-SFGKYVH-SYISTRYDLSV 244
            G  + +   F+EM ++   + +E +L  VLSACS +  L SFG+ VH S I   Y+ + 
Sbjct: 243 NGLAEISAYYFKEMVRSS-FQADEVSLSCVLSACSHLKDLFSFGESVHSSVIKLGYEDTT 301

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           S+ V N++I  Y + G    A +VF   + K+ ++W+ +I GL  N    +A+ +F  M 
Sbjct: 302 SS-VENSLITFYYELGFPEAAEEVFLSTSNKNLVTWNAMIKGLVENDRVNEAMCMFQEM- 359

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
            +   PD  T + +ISAC   GL+ +G  +   +     I  +      ++D+Y +    
Sbjct: 360 RSKNQPDVATLVTIISACGDRGLLPEGKEVHGYIIKKGHIYEECSVGNSLLDLYMKCNDP 419

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIR 403
             A    R MP+    S W  +++     RND + +  +
Sbjct: 420 STARILFRTMPMRDLIS-WNTMISG--YSRNDSLGEEAK 455



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 170/361 (47%), Gaps = 14/361 (3%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           L   S A   +  +  H   ++     D+ + N+L+  Y    D +S+  +F  + + D 
Sbjct: 171 LSGASRARSLEHGIAFHGMALKRRLDTDLSLWNTLMDMYAKCGDFYSSEVVFQRMPYRDT 230

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVS-HKLGKAIHA 132
            SW +++SG    G  + +   F  +     + +  +L  VLSACS L      G+++H+
Sbjct: 231 TSWNSMVSGSLFNGLAEISAYYFKEMVRSSFQADEVSLSCVLSACSHLKDLFSFGESVHS 290

Query: 133 HSLR-NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
             ++    +    ++N+++ FY   G   +   +F+    +N+V+W  MI G  E     
Sbjct: 291 SVIKLGYEDTTSSVENSLITFYYELGFPEAAEEVFLSTSNKNLVTWNAMIKGLVENDRVN 350

Query: 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNA 251
           EA+ +FQEM    +  P+ ATLV ++SAC     L  GK VH YI  +  +     VGN+
Sbjct: 351 EAMCMFQEMRSKNQ--PDVATLVTIISACGDRGLLPEGKEVHGYIIKKGHIYEECSVGNS 408

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMN-GCGRQALQLFSLMIINAVFP 310
           ++++Y+KC D   A  +F  +  +D ISW+T+ISG + N   G +A  +F  ++   +  
Sbjct: 409 LLDLYMKCNDPSTARILFRTMPMRDLISWNTMISGYSRNDSLGEEAKAMFKGLLSEGLSC 468

Query: 311 DDVTFIALISAC------SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
              T +A+I +C      + G  V   ++ +  ++ V      +  Y C  D      LL
Sbjct: 469 TLSTVVAVIPSCFCPQDLNFGKSVHSFILKYGFLTGVSAANSLIHMYICCGDSLAAFSLL 528

Query: 365 E 365
           E
Sbjct: 529 E 529


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 154/476 (32%), Positives = 260/476 (54%), Gaps = 28/476 (5%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           T    L ACS         EIHA+V+    L  + F+ ++L+  Y   + + S  ++F+ 
Sbjct: 299 TIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDH 358

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKL 126
           ++   +  W  +ISG ++ G  ++A+ +F  +     + PN  T+ SV+ AC    +   
Sbjct: 359 ILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSN 418

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
            ++IH ++++   + +  + NA++D Y R G +     +F  M  R+ VSW TMI GY  
Sbjct: 419 KESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVL 478

Query: 187 RGFCKEAVSVFQEMEKTKEA----------------EPNEATLVNVLSACSSISALSFGK 230
            G    A+ +  EM++ +                  +PN  TL+ VL  C++++A++ GK
Sbjct: 479 SGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGK 538

Query: 231 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMN 290
            +H+Y + R  L+    VG+A+++MY KCG + ++ +VFN +  K+ I+W+ +I    M+
Sbjct: 539 EIHAY-AIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMH 597

Query: 291 GCGRQALQLFSLMIINA-----VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 345
           G G +AL+LF  M+  A       P++VTFI + +ACSH GL+ +GL LF  M   + + 
Sbjct: 598 GKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVE 657

Query: 346 PQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW-SVWGALLNACRIHRNDEMFDRIRQ 404
           P   HYACVVD+ GRAG LEEA   +  MP E +    W +LL ACRIH+N E+ +   +
Sbjct: 658 PTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAK 717

Query: 405 DLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +L++ +      + L+SN ++ A  W    ++R  +R+MG+KK+ GCSWIE    +
Sbjct: 718 NLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEV 773



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 113/392 (28%), Positives = 203/392 (51%), Gaps = 18/392 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGH-LHDIFIQNSLLHFYVTVKDIFSAHQI 67
           +++ F   LKA S     +   +IHA  +++G+    + + N+L++ Y     I    ++
Sbjct: 91  DNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKV 150

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHK--EAIDMFCGI---DVKPNANTLVSVLSACSSL- 121
           F+ +   D VSW + I+ L  C F K  +A++ F  +   +++ ++ TLVSV  ACS+L 
Sbjct: 151 FDRITDRDQVSWNSFIAAL--CRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLG 208

Query: 122 VSH--KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
           V H  +LGK +H +SLR + +     +NA++  Y + G +     LF     R++VSW T
Sbjct: 209 VMHGLRLGKQLHGYSLR-VGDQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNT 267

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           MI  +++     EA++ F+ M   +  E +  T+ +VL ACS +  L  GK +H+Y+   
Sbjct: 268 MISSFSQSDRFSEALAFFRLM-VLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRN 326

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
            DL  ++ VG+A+++MY  C  V    +VF+ +  +    W+ +ISG A NG   +AL L
Sbjct: 327 NDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALIL 386

Query: 300 FSLMI-INAVFPDDVTFIALISACSH-GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
           F  MI +  + P+  T  +++ AC H     ++  I   A+   ++    +Q+   ++DM
Sbjct: 387 FIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQN--ALMDM 444

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           Y R G ++ +E     M +    S W  ++  
Sbjct: 445 YSRMGKMDISETIFDSMEVRDRVS-WNTMITG 475



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 152/304 (50%), Gaps = 30/304 (9%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    + AC           IH + ++ G   D ++QN+L+  Y  +  +  +  IF
Sbjct: 399 NTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIF 458

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF--------------------CGIDVKPNA 108
           +S+   D VSW T+I+G    G +  A+ +                      G   KPNA
Sbjct: 459 DSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNA 518

Query: 109 NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168
            TL++VL  C++L +   GK IHA+++RN+  ++I + +A++D Y +CG L     +F +
Sbjct: 519 ITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNE 578

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEM----EKTKEAEPNEATLVNVLSACSSIS 224
           MP +NV++W  +I      G  +EA+ +F+ M     +  EA+PNE T + V +ACS   
Sbjct: 579 MPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSG 638

Query: 225 ALSFGKYVHSYISTRYDLSVSNLVGN--AVINMYVKCGDVGIAIQVFN-MLAYKDKI-SW 280
            +S G  ++ +   ++D  V     +   V+++  + G +  A ++ N M A  DK+ +W
Sbjct: 639 LISEG--LNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAW 696

Query: 281 STVI 284
           S+++
Sbjct: 697 SSLL 700



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 106/222 (47%), Gaps = 5/222 (2%)

Query: 170 PKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 229
           P R+  SW   +         +EA+S + EM     A P+      VL A S +  L  G
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEM-TVSGARPDNFAFPAVLKAVSGLQDLKTG 111

Query: 230 KYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAM 289
           + +H+        S S  V N ++NMY KCG +G   +VF+ +  +D++SW++ I+ L  
Sbjct: 112 EQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCR 171

Query: 290 NGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQ 349
                QAL+ F  M +  +     T +++  ACS+ G++  GL L K +      V   +
Sbjct: 172 FEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVM-HGLRLGKQLHGYSLRVGDQK 230

Query: 350 HYA--CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
            +    ++ MY + G +++++A   E  ++ +   W  ++++
Sbjct: 231 TFTNNALMAMYAKLGRVDDSKALF-ESFVDRDMVSWNTMISS 271



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 25/197 (12%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           P   N  T    L  C+      K  EIHA+ I      DI + ++L+  Y     +  +
Sbjct: 513 PYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLS 572

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKCGFH---KEAIDMFC--------GIDVKPNANTLVS 113
            ++FN +   +V++W  +I     CG H   +EA+++F         G + KPN  T ++
Sbjct: 573 RRVFNEMPNKNVITWNVLIMA---CGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFIT 629

Query: 114 VLSAC--SSLVSHKLG---KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168
           V +AC  S L+S  L    +  H H +   +++       ++D   R G L     L   
Sbjct: 630 VFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYA----CVVDLLGRAGQLEEAYELVNT 685

Query: 169 MPKR--NVVSWTTMIGG 183
           MP     V +W++++G 
Sbjct: 686 MPAEFDKVGAWSSLLGA 702


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 155/457 (33%), Positives = 263/457 (57%), Gaps = 11/457 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +T T  L AC          ++H+ VI  G   D+F+  +L+  Y     + ++ +IF
Sbjct: 247 DKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIF 306

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           N+++  +V+SWT +ISG  +    +EAI +FC +    V PN  T  SVL AC+SL    
Sbjct: 307 NTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFG 366

Query: 126 LGKAIHAHSLR-NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           +GK +H  +++  L+  N +  N++++ Y R G++      F  + ++N++S+ T     
Sbjct: 367 IGKQLHGQTIKLGLSTINCV-GNSLINMYARSGTMECARKAFNILFEKNLISYNTAADAN 425

Query: 185 AERGFCKEAVSVFQEMEKTK-EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           A+     E+ +   E+E T   A P   T   +LS  + I  +  G+ +H+ I  +    
Sbjct: 426 AKALDSDESFN--HEVEHTGVGASP--FTYACLLSGAACIGTIVKGEQIHALI-VKSGFG 480

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
            +  + NA+I+MY KCG+   A+QVFN + Y++ I+W+++ISG A +G   +AL+LF  M
Sbjct: 481 TNLCINNALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEM 540

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
           +   V P++VT+IA++SACSH GL+D+    F +M   + I P+M+HYAC+VD+ GR+GL
Sbjct: 541 LEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGL 600

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           L EA  FI  MP +A+  VW   L +CR+HRN ++ +   + ++ ++     T+ L+SN 
Sbjct: 601 LLEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNL 660

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +A   RW+D   +R  +++  L K+TG SWIEV+  +
Sbjct: 661 YASEGRWDDVAALRKSMKQKKLIKETGYSWIEVDNQV 697



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 182/373 (48%), Gaps = 35/373 (9%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--P 74
           LKAC  +   +    +H  +I+ G   D  + NSL+  Y    D  +A  IF ++     
Sbjct: 46  LKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHKR 105

Query: 75  DVVSWTTIISGLSKCGFHKEAIDMF-----CGID-VKPNANTLVSVLSACSSLVSHKLGK 128
           D+VSW+ IIS  +       A+  F     C  + + PN     ++L +CS+ +    G 
Sbjct: 106 DLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGL 165

Query: 129 AIHAHSLRN-LNENNIILDNAILDFYIRCG-SLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           AI A  L+    ++++ +  A++D + + G  + S   +F KM  +N+V+WT MI  Y++
Sbjct: 166 AIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQ 225

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
            G   +AV +F  +    E  P++ TL ++LSAC  +   S GK +HS++  R  L+   
Sbjct: 226 LGLLDDAVDLFCRL-LVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWV-IRSGLASDV 283

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            VG  +++MY K   V  + ++FN + + + +SW+ +ISG   +   ++A++LF  M+  
Sbjct: 284 FVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHG 343

Query: 307 AVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYEIVPQMQHYACVV 355
            V P+  TF +++ AC+           HG  +  GL     +               ++
Sbjct: 344 HVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCVGN------------SLI 391

Query: 356 DMYGRAGLLEEAE 368
           +MY R+G +E A 
Sbjct: 392 NMYARSGTMECAR 404



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 135/296 (45%), Gaps = 21/296 (7%)

Query: 114 VLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP--K 171
           +L AC    + +LGK +H   + +    + +L N+++  Y +CG   +   +F  M   K
Sbjct: 45  LLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHK 104

Query: 172 RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE--AEPNEATLVNVLSACSSISALSFG 229
           R++VSW+ +I  +A       A+  F  M +       PNE     +L +CS+    + G
Sbjct: 105 RDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTG 164

Query: 230 KYVHSYISTRYDLSVSNLVGNAVINMYVKCG-DVGIAIQVFNMLAYKDKISWSTVISGLA 288
             + +++           VG A+I+M+ K G D+  A  VF+ + +K+ ++W+ +I+  +
Sbjct: 165 LAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYS 224

Query: 289 MNGCGRQALQLFSLMIINAVFPDDVTFIALISAC------SHGGLVDQGLILFKAMSTVY 342
             G    A+ LF  ++++   PD  T  +L+SAC      S G  +   +I     S V+
Sbjct: 225 QLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVF 284

Query: 343 EIVPQMQHYAC-VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
                     C +VDMY ++  +E +      M +      W AL++     R ++
Sbjct: 285 --------VGCTLVDMYAKSAAVENSRKIFNTM-LHHNVMSWTALISGYVQSRQEQ 331


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 153/435 (35%), Positives = 247/435 (56%), Gaps = 10/435 (2%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           E+HA+ I  G   ++ I N+L+  Y     +      F  +   D++SWTTII+G ++  
Sbjct: 370 EVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNE 429

Query: 91  FHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
            H EAI++F      G+DV P    + SVL ACS L S    + IH +  +  +  +I+L
Sbjct: 430 CHLEAINLFRKVQVKGMDVDPM--MIGSVLRACSGLKSRNFIREIHGYVFKR-DLADIML 486

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            NAI++ Y   G        F  +  +++VSWT+MI      G   EA+ +F  +++T  
Sbjct: 487 QNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTN- 545

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
            +P+   +++ LSA +++S+L  GK +H ++  R    +   + +++++MY  CG V  +
Sbjct: 546 IQPDSIAIISALSATANLSSLKKGKEIHGFL-IRKGFFLEGPIASSLVDMYACCGTVENS 604

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
            ++F+ +  +D I W+++I+   M+GCG +A+ LF  M    V PD +TF+AL+ ACSH 
Sbjct: 605 RKMFHSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSHS 664

Query: 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 385
           GL+ +G   F+ M   Y++ P  +HYAC+VD+  R+  LEEA  F+R MPI+    VW A
Sbjct: 665 GLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCA 724

Query: 386 LLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445
           LL AC IH N E+ +   ++L+     + G +AL+SN FA   RW D  ++R  ++  GL
Sbjct: 725 LLGACHIHSNKELGELAAKELLQSDTKNSGKYALISNIFAADGRWNDVEEVRLRMKGNGL 784

Query: 446 KKKTGCSWIEVNPSI 460
           KK  GCSWIEV+  I
Sbjct: 785 KKNPGCSWIEVDNKI 799



 Score =  167 bits (424), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 212/399 (53%), Gaps = 30/399 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YTF  AL+        +  + IH   ++  H  D+++ N+L+  Y     +  A ++F
Sbjct: 247 NTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVF 306

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
            S++  D VSW T++SGL +   +++A++ F  +     KP+  +++++++A     +  
Sbjct: 307 ASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLL 366

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK +HA+++RN  ++N+ + N ++D Y +C  +   GY F  M +++++SWTT+I GYA
Sbjct: 367 NGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYA 426

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +     EA+++F++++  K  + +   + +VL ACS + + +F + +H Y+  R DL+  
Sbjct: 427 QNECHLEAINLFRKVQ-VKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKR-DLA-D 483

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
            ++ NA++N+Y + G    A + F  +  KD +SW+++I+    NG   +AL+LF  +  
Sbjct: 484 IMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQ 543

Query: 306 NAVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
             + PD +  I+ +SA +           HG L+ +G  L   +++             +
Sbjct: 544 TNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIAS------------SL 591

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           VDMY   G +E +      +  + +  +W +++NA  +H
Sbjct: 592 VDMYACCGTVENSRKMFHSVK-QRDLILWTSMINANGMH 629



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 189/387 (48%), Gaps = 16/387 (4%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           TF   LKAC      +   EIH   ++ G    +F+ N+L+  Y    D+  A  +F+ +
Sbjct: 147 TFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGI 206

Query: 72  VFP--DVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKL 126
           +    D VSW +IIS     G   EA+ +F     + V  N  T V+ L         KL
Sbjct: 207 MMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKL 266

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           G  IH  +L++ +  ++ + NA++  Y +CG +     +F  M  R+ VSW T++ G  +
Sbjct: 267 GMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQ 326

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
               ++A++ F++M+ + + +P++ +++N+++A      L  GK VH+Y + R  L  + 
Sbjct: 327 NELYRDALNYFRDMQNSAQ-KPDQVSVLNLIAASGRSGNLLNGKEVHAY-AIRNGLDSNM 384

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            +GN +I+MY KC  V      F  +  KD ISW+T+I+G A N C  +A+ LF  + + 
Sbjct: 385 QIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVK 444

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
            +  D +   +++ ACS  GL  +  I           +  +     +V++YG  G  + 
Sbjct: 445 GMDVDPMMIGSVLRACS--GLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHRDY 502

Query: 367 A-EAF--IREMPIEAEWSVWGALLNAC 390
           A  AF  IR   I +    W +++  C
Sbjct: 503 ARRAFESIRSKDIVS----WTSMITCC 525



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 173/364 (47%), Gaps = 11/364 (3%)

Query: 2   LSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDI 61
           L+ PS   H   +  L  C       +  ++HA +++  HL   F+   LLH Y     +
Sbjct: 39  LATPSRLEH-AHSLLLDLCVAVKALPQGQQLHARLLK-SHL-SAFLATKLLHMYEKCGSL 95

Query: 62  FSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSAC 118
             A ++F+ +    + +W  ++      G + EAI+++     + V  +A T  SVL AC
Sbjct: 96  KDAVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKAC 155

Query: 119 SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLF--VKMPKRNVVS 176
            +L   +LG  IH  +++      + + NA++  Y +CG L     LF  + M K + VS
Sbjct: 156 GALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVS 215

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           W ++I  +   G C EA+S+F+ M++   A  N  T V  L      S +  G  +H   
Sbjct: 216 WNSIISAHVTEGKCLEALSLFRRMQEVGVAS-NTYTFVAALQGVEDPSFVKLGMGIHG-A 273

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
           + + +      V NA+I MY KCG +  A +VF  +  +D +SW+T++SGL  N   R A
Sbjct: 274 ALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDA 333

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
           L  F  M  +A  PD V+ + LI+A    G +  G  +  A +    +   MQ    ++D
Sbjct: 334 LNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEV-HAYAIRNGLDSNMQIGNTLID 392

Query: 357 MYGR 360
           MY +
Sbjct: 393 MYAK 396



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 133/284 (46%), Gaps = 20/284 (7%)

Query: 114 VLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
           +L  C ++ +   G+ +HA  L++    +  L   +L  Y +CGSL     +F +M +R 
Sbjct: 52  LLDLCVAVKALPQGQQLHARLLKS--HLSAFLATKLLHMYEKCGSLKDAVKVFDEMTERT 109

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
           + +W  M+G +   G   EA+ +++EM +      +  T  +VL AC ++     G  +H
Sbjct: 110 IFTWNAMMGAFVSSGKYLEAIELYKEM-RVLGVAIDACTFPSVLKACGALGESRLGAEIH 168

Query: 234 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN--MLAYKDKISWSTVISGLAMNG 291
             ++ +        V NA+I MY KCGD+G A  +F+  M+  +D +SW+++IS     G
Sbjct: 169 G-VAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEG 227

Query: 292 CGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY 351
              +AL LF  M    V  +  TF+A +        V  G+        ++    +  H+
Sbjct: 228 KCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGM-------GIHGAALKSNHF 280

Query: 352 A------CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           A       ++ MY + G +E+AE     M +  ++  W  LL+ 
Sbjct: 281 ADVYVANALIAMYAKCGRMEDAERVFASM-LCRDYVSWNTLLSG 323



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 7/109 (6%)

Query: 16  ALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 75
           AL A +     +K  EIH  +I  G   +  I +SL+  Y     + ++ ++F+SV   D
Sbjct: 556 ALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRD 615

Query: 76  VVSWTTII--SGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 119
           ++ WT++I  +G+  CG   EAI +F  +   +V P+  T +++L ACS
Sbjct: 616 LILWTSMINANGMHGCG--NEAIALFKKMTDENVIPDHITFLALLYACS 662


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 159/430 (36%), Positives = 236/430 (54%), Gaps = 38/430 (8%)

Query: 64  AHQIFNSV--VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSAC 118
           A QIF  V    P+   W + +  L++     +AI +F  +   DV P+  T  SVL AC
Sbjct: 79  AQQIFECVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRAC 138

Query: 119 SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVV--- 175
            +L+    G+ +H    +    +N+ L N I+  Y  CG +     LF KMP+R+VV   
Sbjct: 139 LNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWN 198

Query: 176 ----------------------------SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
                                       SWT+MI GY + G  KEA+ +F +ME+    +
Sbjct: 199 IMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAG-VK 257

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
            NE T+V VL+AC+ + AL  G  +H Y S R+    +  + N +I+MYVKCG +  A +
Sbjct: 258 CNEVTVVAVLAACADLGALDLGMRIHEY-SNRHGFKRNVRISNTLIDMYVKCGCLEEACK 316

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           VF  +  +  +SWS +I GLAM+G   +AL+LFS M    + P+ VTFI L+ ACSH GL
Sbjct: 317 VFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGL 376

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           + +G   F +M+  Y I+PQ++HY C+VD+  RAGLL EA  FI  MP++    VWGALL
Sbjct: 377 ISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALL 436

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
            ACR+H+N EM +   + L+    ++ G + ++SN +A A RWEDT ++R  ++   +KK
Sbjct: 437 GACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKK 496

Query: 448 KTGCSWIEVN 457
             G S I V+
Sbjct: 497 TPGWSSITVD 506



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 154/318 (48%), Gaps = 39/318 (12%)

Query: 4   CPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFS 63
           CP ++   T +  L+AC           +H  V + G   ++++QN ++H Y +  ++  
Sbjct: 125 CPDTF---TCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGE 181

Query: 64  AHQIFNSVVFPDVV-------------------------------SWTTIISGLSKCGFH 92
           A  +F  +   DVV                               SWT++I+G  +CG  
Sbjct: 182 ARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKA 241

Query: 93  KEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAI 149
           KEAI +F  ++   VK N  T+V+VL+AC+ L +  LG  IH +S R+  + N+ + N +
Sbjct: 242 KEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTL 301

Query: 150 LDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN 209
           +D Y++CG L     +F +M +R VVSW+ MIGG A  G  +EA+ +F +M +    EPN
Sbjct: 302 IDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVG-IEPN 360

Query: 210 EATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-V 268
             T + +L ACS +  +S G+   + ++  Y +         ++++  + G +  A + +
Sbjct: 361 GVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFI 420

Query: 269 FNMLAYKDKISWSTVISG 286
            NM    + + W  ++  
Sbjct: 421 LNMPMKPNGVVWGALLGA 438


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 153/460 (33%), Positives = 262/460 (56%), Gaps = 32/460 (6%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           MLSC  + +HYTF   LKACS     +  L++H  +++ G   ++FI N+L+  Y     
Sbjct: 128 MLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGC 187

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSS 120
           +  A ++ + + + DVVSW ++++G ++ G   +A+++   +D   N N     +++ S 
Sbjct: 188 LREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMD-SLNLNHDAGTMASLSP 246

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           +V +         SL N+              YI          +F +M K+N++SW  M
Sbjct: 247 VVCYT--------SLENVQ-------------YIH--------NMFERMTKKNLISWNVM 277

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           I  Y       EAVS+F +ME+    +P+  T+ ++L AC  +SAL  G+ +H YI  + 
Sbjct: 278 IAIYVNNSMPNEAVSLFLQMEECG-MKPDAVTIASLLPACGDLSALFLGRRLHKYIE-KG 335

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
           +L  + L+ NA+++MY KCG +  A  VF+ +  +D +SW++++S    +G G  A+ LF
Sbjct: 336 NLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALF 395

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
           + M+ +   PD + F++++SACSH GL+DQG   F+ M+  Y IVP+++H+AC+VD++GR
Sbjct: 396 AKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGR 455

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           AG +EEA +FI++MP+E    VWGALL+ACR+H   ++       L        G + L+
Sbjct: 456 AGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLL 515

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           SN +A A  W+D   +R  ++++G+KK  G S +E+N  +
Sbjct: 516 SNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQV 555


>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 579

 Score =  275 bits (702), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 148/449 (32%), Positives = 253/449 (56%), Gaps = 6/449 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           TFT  LKACS          I    +++G+  D+F+ +S+L+ Y     +  A  +F+ +
Sbjct: 86  TFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDVFVVSSVLNLYAKSGKMDKAKIVFDKM 145

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
           V  DVVSWTT+I+G ++ G   +AID++  +     + +   +V ++ AC+SL   K G 
Sbjct: 146 VKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKERTEGDGVVMVGLIQACTSLGDSKFGL 205

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
           ++H H +R     + +L  +++D Y + G L     +F  +P ++V+SW  +I G+A+ G
Sbjct: 206 SVHGHMVRREMNMDNVLQTSLIDMYAKNGKLELASRVFEGIPYKSVISWGALISGFAQNG 265

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
           F  + ++   EM+ +   +P+  +L++ LSAC+ +  L  GK +H +I  R  L +  + 
Sbjct: 266 FANKTLASLVEMQNSG-FKPDLVSLISSLSACAQVGNLKVGKSLHGHIVKR--LYLDKVS 322

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
           G A+I+MY KCG +  A  +F+ +  +D I W+ +IS   ++G G +AL LF  M    +
Sbjct: 323 GTALIDMYAKCGALTFARALFDQIEPRDLILWNAMISSYGIHGDGIEALSLFLKMKETNI 382

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD  TF +L+SACSH GLV++G   F  +    +I P  +HYAC+VD+  RAG +EEA 
Sbjct: 383 TPDHATFASLLSACSHSGLVEEGQYWFHVLIDKSKIQPSEKHYACMVDLLSRAGQVEEAY 442

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
             I  M I+   ++W ALL+ C  H+N  + + + + ++      +G + L+SN F+ A 
Sbjct: 443 QLIESMHIKPGLAIWVALLSGCLNHKNLLIGEMVAKKILESNPDDLGIYVLVSNFFSMAK 502

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +W+D    R  ++  G++K  G S +EVN
Sbjct: 503 KWDDAAVFRKIMKNTGMRKVPGYSAVEVN 531



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 192/367 (52%), Gaps = 9/367 (2%)

Query: 31  EIHAHVIEYG-HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
           +IHA ++  G   +D      L+  Y  + +I  A  +F  +    + +W ++I   S+ 
Sbjct: 3   QIHALILTTGLFFNDANSIAQLIASYGRINNIIPARNVFEKMPQRSINAWNSMIIAYSRT 62

Query: 90  GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
            +  E ++++  +    +KP+++T    L ACSSL+   +G+ I   ++      ++ + 
Sbjct: 63  NYPDEVLNLYYRMISEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDVFVV 122

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           +++L+ Y + G +     +F KM KR+VVSWTTMI G+A+ G   +A+ +++ M+K +  
Sbjct: 123 SSVLNLYAKSGKMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKER-T 181

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
           E +   +V ++ AC+S+    FG  VH ++  R ++++ N++  ++I+MY K G + +A 
Sbjct: 182 EGDGVVMVGLIQACTSLGDSKFGLSVHGHM-VRREMNMDNVLQTSLIDMYAKNGKLELAS 240

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
           +VF  + YK  ISW  +ISG A NG   + L     M  +   PD V+ I+ +SAC+  G
Sbjct: 241 RVFEGIPYKSVISWGALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQVG 300

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 386
            +  G  L   +  V  +         ++DMY + G L  A A   ++    +  +W A+
Sbjct: 301 NLKVGKSLHGHI--VKRLYLDKVSGTALIDMYAKCGALTFARALFDQIE-PRDLILWNAM 357

Query: 387 LNACRIH 393
           +++  IH
Sbjct: 358 ISSYGIH 364


>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
 gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  275 bits (702), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 143/449 (31%), Positives = 256/449 (57%), Gaps = 12/449 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YT+   +K CS     ++   +H   I  G   D+++ +SL+ FY   K+I SA ++F
Sbjct: 104 DKYTYPLLIKVCSNELRLKEGEIVHGSAIRCGVSDDVYVGSSLISFYGKCKEILSARKVF 163

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK--PNANTLVSVLSACSSLVSHKL 126
           + +   +VVSWT +++G +  G  + A  +F  +  +  P+ N ++S L     L   + 
Sbjct: 164 DEIPERNVVSWTAMVAGYASVGDLENAKRVFERMPERNLPSWNAMISGLGKAGDLSGAR- 222

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
                      + E N++    ++D Y + G +AS   LF + P+++VV+W+ +I GY+ 
Sbjct: 223 ------KVFDEMVERNVVSFTVMIDGYAKVGDMASARALFDEAPEKDVVAWSALISGYSR 276

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS-TRYDLSVS 245
                EAV +F EM  +   +P+E  +V+++SACS +      K+V SY+S T  D   +
Sbjct: 277 NEQPNEAVKIFFEM-VSMNVKPDEFIMVSLMSACSQLGNSDLAKWVDSYLSQTSIDTRQA 335

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
           +++  A+I+M+ KCG++  A+++F  +  +D I   ++I GL+++G G +A++LF+ M+ 
Sbjct: 336 HVLA-ALIDMHAKCGNMEKAVKLFQDMPSRDLIPCCSLIQGLSIHGRGVEAVELFNRMLD 394

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             + PD V F  +++ACS GGL++ G   F  M   Y +VP   HYAC+VD+  RAG L 
Sbjct: 395 EGLIPDTVAFTVILTACSRGGLIEDGWHFFDTMKNKYSVVPSPNHYACMVDLLSRAGQLR 454

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
            A   ++ MP++     WGALL AC++H + E+ + +   L+  +    G++ L+SN +A
Sbjct: 455 AAYDLLKSMPLKPHACAWGALLGACKLHGDVELREEVANRLLELEPEKAGSYVLLSNIYA 514

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
            A++W D + +RDE++  G++K  GCS+I
Sbjct: 515 SANQWLDVSIVRDEMKERGIRKIPGCSYI 543



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 174/364 (47%), Gaps = 22/364 (6%)

Query: 17  LKAC-SLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 75
           +K+C ++ H HQ     HAH+I  G   D FI   + HF      +  +  IFN ++ P 
Sbjct: 16  IKSCKTIPHLHQ----FHAHIIHKGLEQDHFI---ISHFLSISTSVSYSTSIFNRLLNPS 68

Query: 76  VVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNA----NTLVSVLSACSSLVSHKLGKAIH 131
              +  ++   SK     +   +F  +     A     T   ++  CS+ +  K G+ +H
Sbjct: 69  TFLYNILLKIFSKNSQFIDTFSLFYRMKQSEYALSDKYTYPLLIKVCSNELRLKEGEIVH 128

Query: 132 AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
             ++R    +++ + ++++ FY +C  + S   +F ++P+RNVVSWT M+ GYA  G  +
Sbjct: 129 GSAIRCGVSDDVYVGSSLISFYGKCKEILSARKVFDEIPERNVVSWTAMVAGYASVGDLE 188

Query: 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNA 251
            A  VF+ M      E N  +   ++S       LS  + V   +  R  +S +      
Sbjct: 189 NAKRVFERM-----PERNLPSWNAMISGLGKAGDLSGARKVFDEMVERNVVSFT-----V 238

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD 311
           +I+ Y K GD+  A  +F+    KD ++WS +ISG + N    +A+++F  M+   V PD
Sbjct: 239 MIDGYAKVGDMASARALFDEAPEKDVVAWSALISGYSRNEQPNEAVKIFFEMVSMNVKPD 298

Query: 312 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFI 371
           +   ++L+SACS  G  D    +   +S       Q    A ++DM+ + G +E+A    
Sbjct: 299 EFIMVSLMSACSQLGNSDLAKWVDSYLSQTSIDTRQAHVLAALIDMHAKCGNMEKAVKLF 358

Query: 372 REMP 375
           ++MP
Sbjct: 359 QDMP 362



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/298 (20%), Positives = 138/298 (46%), Gaps = 20/298 (6%)

Query: 107 NANTLVSVLSACSSLVSHKLGKAIHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYL 165
           ++N  +S+L      + H      HAH + + L +++ I+ +    F     S++    +
Sbjct: 7   SSNPSISLLIKSCKTIPHL--HQFHAHIIHKGLEQDHFIISH----FLSISTSVSYSTSI 60

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
           F ++   +   +  ++  +++     +  S+F  M++++ A  ++ T   ++  CS+   
Sbjct: 61  FNRLLNPSTFLYNILLKIFSKNSQFIDTFSLFYRMKQSEYALSDKYTYPLLIKVCSNELR 120

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285
           L  G+ VH   + R  +S    VG+++I+ Y KC ++  A +VF+ +  ++ +SW+ +++
Sbjct: 121 LKEGEIVHGS-AIRCGVSDDVYVGSSLISFYGKCKEILSARKVFDEIPERNVVSWTAMVA 179

Query: 286 GLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 345
           G A  G    A ++F  M    +     ++ A+IS     G +     +F  M     + 
Sbjct: 180 GYASVGDLENAKRVFERMPERNL----PSWNAMISGLGKAGDLSGARKVFDEM-----VE 230

Query: 346 PQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIR 403
             +  +  ++D Y + G +  A A   E P E +   W AL++     RN++  + ++
Sbjct: 231 RNVVSFTVMIDGYAKVGDMASARALFDEAP-EKDVVAWSALISG--YSRNEQPNEAVK 285


>gi|224112156|ref|XP_002316102.1| predicted protein [Populus trichocarpa]
 gi|222865142|gb|EEF02273.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  275 bits (702), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 146/452 (32%), Positives = 254/452 (56%), Gaps = 5/452 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    + AC       +   +H ++I+ G     ++  +LL  Y     +  A  +F
Sbjct: 202 NQITLGILVHACKKLGALHQGKWLHGYLIKCGIELGSYLVTALLDLYAKCGVVRDARSVF 261

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLVSHK 125
           + +   D+VSWT +I G ++ G  +EA+ +F     + V PN  T+ SV S+CS L++  
Sbjct: 262 DELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSSCSQLLNLN 321

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG++IH  S++ L   + I+ N+++DFY +C       Y+F  +  R+VV+W ++I  ++
Sbjct: 322 LGRSIHGLSIK-LGSRDPIVTNSLVDFYAKCQMNRDARYVFETISDRDVVAWNSIISAFS 380

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G   EA+ +F +M +     P+  TLV+VLSAC+S++AL  G   H+Y   R  LS +
Sbjct: 381 QNGSAYEALELFHQM-RMGSVLPDAVTLVSVLSACASLNALQVGSSFHAYAVKRGLLSSN 439

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             VG A++  Y KCGD   A  +F+ +  K  ++WS +ISG  + G GR +L +F  M+ 
Sbjct: 440 VYVGTALLTFYAKCGDAESARVIFDGMDQKSTVTWSAMISGYGIQGNGRGSLSIFGDMLK 499

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             + P++  F +++SACSH G++ +G  LF  +   Y +VP  +HY C+VD+  RAG L+
Sbjct: 500 AELKPNEEIFTSILSACSHTGMIGEGWRLFTMICQDYNLVPSTKHYTCMVDLLARAGRLK 559

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EA  FI++MP++ + S++GA L+ C +H   ++ +   + ++         + LM N +A
Sbjct: 560 EALDFIQKMPVQPDVSLFGAFLHGCGLHSRFDLGELAIKRMLELHPGDACYYVLMCNLYA 619

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
              RW    ++R+ +++ GL K  GCS +E++
Sbjct: 620 SDARWSKVKQVRELMKQRGLMKTPGCSLMEMD 651



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 178/326 (54%), Gaps = 7/326 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M  C    ++  F+  LKACS +    +  ++H  ++++G+  D F+   L+  Y    +
Sbjct: 94  MRVCLKECDNVVFSHVLKACSESRNFDEGRKVHCQIVKFGN-PDSFVFTGLVDMYAKCGE 152

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           I  +  +F+  +  +V SW+++I+G  +    ++ + +F  +    ++ N  TL  ++ A
Sbjct: 153 IECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRMREELIEANQITLGILVHA 212

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C  L +   GK +H + ++   E    L  A+LD Y +CG +     +F ++   ++VSW
Sbjct: 213 CKKLGALHQGKWLHGYLIKCGIELGSYLVTALLDLYAKCGVVRDARSVFDELHGIDIVSW 272

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
           T MI GY + G  +EA+ +F + E+     PN+ T+ +V S+CS +  L+ G+ +H  +S
Sbjct: 273 TAMIVGYTQNGCPEEALKLFLQKEQVA-VLPNDVTIASVFSSCSQLLNLNLGRSIHG-LS 330

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            +   S   +V N++++ Y KC     A  VF  ++ +D ++W+++IS  + NG   +AL
Sbjct: 331 IKLG-SRDPIVTNSLVDFYAKCQMNRDARYVFETISDRDVVAWNSIISAFSQNGSAYEAL 389

Query: 298 QLFSLMIINAVFPDDVTFIALISACS 323
           +LF  M + +V PD VT ++++SAC+
Sbjct: 390 ELFHQMRMGSVLPDAVTLVSVLSACA 415



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 155/298 (52%), Gaps = 6/298 (2%)

Query: 30  LEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
           +E+HA+++  G   D+     L+  Y +   +  A  +F+++  PD +SW  II      
Sbjct: 22  MEMHAYLVVQGLTRDLSCSTKLVSLYGSFGRLDLARLVFDTIPHPDFLSWKVIIRWYFLN 81

Query: 90  GFHKEAIDMFCGIDV--KPNANTLVS-VLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
              ++ +  +  + V  K   N + S VL ACS   +   G+ +H   ++  N ++ +  
Sbjct: 82  SEFRDIVGFYNRMRVCLKECDNVVFSHVLKACSESRNFDEGRKVHCQIVKFGNPDSFVF- 140

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
             ++D Y +CG +     +F +   RNV SW++MI GY +    ++ + +F  M + +  
Sbjct: 141 TGLVDMYAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRM-REELI 199

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
           E N+ TL  ++ AC  + AL  GK++H Y+  +  + + + +  A++++Y KCG V  A 
Sbjct: 200 EANQITLGILVHACKKLGALHQGKWLHGYL-IKCGIELGSYLVTALLDLYAKCGVVRDAR 258

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
            VF+ L   D +SW+ +I G   NGC  +AL+LF      AV P+DVT  ++ S+CS 
Sbjct: 259 SVFDELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSSCSQ 316



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 96/207 (46%), Gaps = 21/207 (10%)

Query: 218 SACSSISALSFGKYVHSYISTR---YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
           S C +I+ L     +H+Y+  +    DLS S      ++++Y   G + +A  VF+ + +
Sbjct: 13  SLCDNINTL---MEMHAYLVVQGLTRDLSCST----KLVSLYGSFGRLDLARLVFDTIPH 65

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
            D +SW  +I    +N   R  +  ++ M +     D+V F  ++ ACS     D+G   
Sbjct: 66  PDFLSWKVIIRWYFLNSEFRDIVGFYNRMRVCLKECDNVVFSHVLKACSESRNFDEGR-- 123

Query: 335 FKAMSTVYEIV-PQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
            K    + +   P    +  +VDMY + G +E + +   E  ++     W +++ A  + 
Sbjct: 124 -KVHCQIVKFGNPDSFVFTGLVDMYAKCGEIECSRSVFDE-NLDRNVFSWSSMI-AGYVQ 180

Query: 394 RNDE-----MFDRIRQDLVNKKGVSVG 415
            N       +F+R+R++L+    +++G
Sbjct: 181 NNLAQDGLVLFNRMREELIEANQITLG 207


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  275 bits (702), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 153/460 (33%), Positives = 262/460 (56%), Gaps = 32/460 (6%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           MLSC  + +HYTF   LKACS     +  L++H  +++ G   ++FI N+L+  Y     
Sbjct: 128 MLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGC 187

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSS 120
           +  A ++ + + + DVVSW ++++G ++ G   +A+++   +D   N N     +++ S 
Sbjct: 188 LREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMD-SLNLNHDAGTMASLSP 246

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           +V +         SL N+              YI          +F +M K+N++SW  M
Sbjct: 247 VVCYT--------SLENVQ-------------YIH--------NMFERMTKKNLISWNVM 277

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           I  Y       EAVS+F +ME+    +P+  T+ ++L AC  +SAL  G+ +H YI  + 
Sbjct: 278 IAIYVNNSMPNEAVSLFLQMEECG-MKPDAVTIASLLPACGDLSALFLGRRLHKYIE-KG 335

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
           +L  + L+ NA+++MY KCG +  A  VF+ +  +D +SW++++S    +G G  A+ LF
Sbjct: 336 NLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALF 395

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
           + M+ +   PD + F++++SACSH GL+DQG   F+ M+  Y IVP+++H+AC+VD++GR
Sbjct: 396 AKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGR 455

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           AG +EEA +FI++MP+E    VWGALL+ACR+H   ++       L        G + L+
Sbjct: 456 AGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLL 515

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           SN +A A  W+D   +R  ++++G+KK  G S +E+N  +
Sbjct: 516 SNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQV 555


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  275 bits (702), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 141/428 (32%), Positives = 250/428 (58%), Gaps = 6/428 (1%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           IHA VI+  +  D FI + L+  Y  +     A ++F+ +   D+VSW +++SGLS  G+
Sbjct: 161 IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGY 220

Query: 92  HKEAIDMFCGIDV----KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
               ++ FC +      +PN  TL+SV+SAC+ + +   GK++H   ++        + N
Sbjct: 221 LGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVN 280

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           ++++ Y + G L +   LF +MP R++VSW +M+  +   G+ ++ + +F  M++     
Sbjct: 281 SLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAG-IN 339

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
           P++AT+V +L AC+        + +H+YI  R   +   ++  A++N+Y K G +  +  
Sbjct: 340 PDQATMVALLRACTDTGLGRQAESIHAYIH-RCGFNADIIIATALLNLYAKLGRLNASED 398

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           +F  +  +D I+W+ +++G A++ CGR+A++LF LM+   V  D VTF  L+SACSH GL
Sbjct: 399 IFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGL 458

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           V++G   F+ MS VY + P++ HY+C+VD+ GR+G LE+A   I+ MP+E    VWGALL
Sbjct: 459 VEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALL 518

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
            ACR++ N E+   + + L++        + ++SN ++ A  W   +K+R  ++   L +
Sbjct: 519 GACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRXASKVRXLMKERRLTR 578

Query: 448 KTGCSWIE 455
             GCS+IE
Sbjct: 579 NPGCSFIE 586



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 159/312 (50%), Gaps = 19/312 (6%)

Query: 109 NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168
            +LV  +S+C+S+       AIHA  +++LN ++  + + ++  Y + G       LF +
Sbjct: 143 QSLVFAISSCTSV---SYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDE 199

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           MP R++VSW +++ G + RG+    ++ F  M      +PNE TL++V+SAC+ + AL  
Sbjct: 200 MPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDE 259

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
           GK +H  +  +  +S    V N++INMY K G +  A Q+F  +  +  +SW++++    
Sbjct: 260 GKSLHGVV-VKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHN 318

Query: 289 MNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQM 348
            NG   + + LF+LM    + PD  T +AL+ AC+  GL  Q         +++  + + 
Sbjct: 319 HNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQA-------ESIHAYIHRC 371

Query: 349 QHYACVV------DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRI 402
              A ++      ++Y + G L  +E    E+  + +   W A+L    +H       ++
Sbjct: 372 GFNADIIIATALLNLYAKLGRLNASEDIFEEIK-DRDTIAWTAMLAGYAVHACGREAIKL 430

Query: 403 RQDLVNKKGVSV 414
             DL+ K+GV V
Sbjct: 431 F-DLMVKEGVEV 441



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 119/237 (50%), Gaps = 8/237 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    + AC+      +   +H  V++ G      + NSL++ Y  +  + +A Q+F
Sbjct: 240 NEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLF 299

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLVS 123
             +    +VSW +++   +  G+ ++ +D+F      GI+  P+  T+V++L AC+    
Sbjct: 300 EEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGIN--PDQATMVALLRACTDTGL 357

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            +  ++IHA+  R     +II+  A+L+ Y + G L +   +F ++  R+ ++WT M+ G
Sbjct: 358 GRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAG 417

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           YA     +EA+ +F  M K +  E +  T  ++LSACS    +  GK     +S  Y
Sbjct: 418 YAVHACGREAIKLFDLMVK-EGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVY 473


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  274 bits (701), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 149/450 (33%), Positives = 256/450 (56%), Gaps = 7/450 (1%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           + +   L AC      +    +HAH+I+  +L   +++  LL FY     +  A ++ + 
Sbjct: 53  HGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDE 112

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLG 127
           +   +VVSWT +IS  S+ G   EA+ +F  +   D KPN  T  +VL++C       LG
Sbjct: 113 MPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLG 172

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           K IH   ++   +++I + +++LD Y + G +     +F  +P+R+VVS T +I GYA+ 
Sbjct: 173 KQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQL 232

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G  +EA+ +F  +  ++   PN  T  ++L+A S ++ L  GK  H ++  R +L    +
Sbjct: 233 GLDEEALEMFHRLH-SEGMSPNYVTYASLLTALSGLALLDHGKQAHCHV-LRRELPFYAV 290

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           + N++I+MY KCG++  A ++F+ +  +  ISW+ ++ G + +G GR+ L+LF LM    
Sbjct: 291 LQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEK 350

Query: 308 -VFPDDVTFIALISACSHGGLVDQGLILFKAM-STVYEIVPQMQHYACVVDMYGRAGLLE 365
            V PD VT +A++S CSHG + D GL +F  M +  Y   P  +HY C+VDM GRAG ++
Sbjct: 351 RVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRID 410

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EA  FI+ MP +    V G+LL ACR+H + ++ + + + L+  +  + G + ++SN +A
Sbjct: 411 EAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYA 470

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
            A RW D N +R  + +  + K+ G SWI+
Sbjct: 471 SAGRWADVNNVRAMMMQKAVTKEPGRSWIQ 500



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 183/377 (48%), Gaps = 17/377 (4%)

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSH 124
           H+ F+S     V+     IS L   G  +EA+     +  +   +   ++L+AC    + 
Sbjct: 9   HRSFSSSPTNYVLQTILPISQLCSNGRLQEALLEMAMLGPEMGFHGYDALLNACLDKRAL 68

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           + G+ +HAH ++        L   +L FY +C  L     +  +MP++NVVSWT MI  Y
Sbjct: 69  RDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRY 128

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           ++ G   EA++VF EM ++ + +PNE T   VL++C   S L  GK +H  I  +++   
Sbjct: 129 SQTGHSSEALTVFAEMMRS-DGKPNEFTFATVLTSCIRASGLGLGKQIHGLI-VKWNYDS 186

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
              VG+++++MY K G +  A ++F  L  +D +S + +I+G A  G   +AL++F  + 
Sbjct: 187 HIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLH 246

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC----VVDMYGR 360
              + P+ VT+ +L++A S   L+D G       +  + +  ++  YA     ++DMY +
Sbjct: 247 SEGMSPNYVTYASLLTALSGLALLDHG-----KQAHCHVLRRELPFYAVLQNSLIDMYSK 301

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIH---RNDEMFDRIRQDLVNKKGVSVGTF 417
            G L  A      MP     S W A+L     H   R      R+ +D    K  +V   
Sbjct: 302 CGNLSYARRLFDNMPERTAIS-WNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLL 360

Query: 418 ALMSNTFAGADRWEDTN 434
           A++S    G  R EDT 
Sbjct: 361 AVLSGCSHG--RMEDTG 375



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 118/224 (52%), Gaps = 3/224 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+      N +TF   L +C  A       +IH  ++++ +   IF+ +SLL  Y     
Sbjct: 144 MMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQ 203

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           I  A +IF  +   DVVS T II+G ++ G  +EA++MF  +    + PN  T  S+L+A
Sbjct: 204 IKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTA 263

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
            S L     GK  H H LR       +L N+++D Y +CG+L+    LF  MP+R  +SW
Sbjct: 264 LSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISW 323

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221
             M+ GY++ G  +E + +F+ M   K  +P+  TL+ VLS CS
Sbjct: 324 NAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCS 367


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  274 bits (701), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 153/452 (33%), Positives = 262/452 (57%), Gaps = 8/452 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N++T + ALK+C+     +    +H   ++  +  D+++  +LL  Y    +I  A Q F
Sbjct: 204 NNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFF 263

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLVSH 124
             +   D++ W+ +IS  ++    KEA+++FC +     V PN  T  SVL AC+SLV  
Sbjct: 264 EEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLL 323

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
            LG  IH+  L+   ++N+ + NA++D Y +CG + +   LF    ++N V+W T+I GY
Sbjct: 324 NLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGY 383

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLS 243
            + G  ++A+++F  M    + +P E T  +VL A +S+ AL  G+ +HS  I T Y+  
Sbjct: 384 VQLGDGEKALNLFSNMLGL-DIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYN-- 440

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
             ++V N++I+MY KCG +  A   F+ +  +D++SW+ +I G +++G G +AL LF +M
Sbjct: 441 KDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMM 500

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
             +   P+ +TF+ ++SACS+ GL+D+G   FK+M   Y I P ++HY C+V + GR+G 
Sbjct: 501 QQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQ 560

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
            +EA   I E+P +    VW ALL AC IH+N ++     Q ++  +     T  L+SN 
Sbjct: 561 FDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVLLSNM 620

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
           +A A RW++   +R  +++  +KK+ G SW+E
Sbjct: 621 YATAKRWDNVAYVRKNMKKKKVKKEPGLSWVE 652



 Score =  197 bits (501), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 115/407 (28%), Positives = 219/407 (53%), Gaps = 18/407 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N + FT  LK           L +HA+V + GH  D F+  +L+  Y    ++ +A Q+F
Sbjct: 103 NQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVF 162

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHK 125
           + + F D+VSWT +++  ++   H++++ +FC + +   +PN  T+ + L +C+ L + K
Sbjct: 163 DGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFK 222

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           +GK++H  +L+   + ++ +  A+L+ Y + G +A     F +MPK +++ W+ MI  YA
Sbjct: 223 VGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYA 282

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +    KEA+ +F  M ++    PN  T  +VL AC+S+  L+ G  +HS +  +  L  +
Sbjct: 283 QSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCV-LKVGLDSN 341

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V NA++++Y KCG++  ++++F     K++++W+T+I G    G G +AL LFS M+ 
Sbjct: 342 VFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLG 401

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGL----ILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
             + P +VT+ +++ A +    ++ G     +  K M     +V        ++DMY + 
Sbjct: 402 LDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVAN-----SLIDMYAKC 456

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIH----RNDEMFDRIRQ 404
           G +++A     +M  + E S W AL+    IH        +FD ++Q
Sbjct: 457 GRIDDARLTFDKMDKQDEVS-WNALICGYSIHGLGMEALNLFDMMQQ 502



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 156/306 (50%), Gaps = 10/306 (3%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC-G 90
           +H H++++G   D+F QN LL+ YV    +  A ++F+ +   + VS+ T+  G S+   
Sbjct: 25  LHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSRSHQ 84

Query: 91  FHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK---AIHAHSLRNLNENNIILDN 147
           F +    +          N  V   +    LVS  L     ++HA+  +  ++ +  +  
Sbjct: 85  FQRARRLLLRLFREGYEVNQFV-FTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGT 143

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           A++D Y  CG++ +   +F  +  +++VSWT M+  YAE    ++++ +F +M +     
Sbjct: 144 ALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQM-RIMGYR 202

Query: 208 PNEATLVNVLSACSSISALSFGKYVHS-YISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
           PN  T+   L +C+ + A   GK VH   +   YD  +   VG A++ +Y K G++  A 
Sbjct: 203 PNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDL--YVGIALLELYTKSGEIAEAQ 260

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA-VFPDDVTFIALISACSHG 325
           Q F  +   D I WS +IS  A +   ++AL+LF  M  ++ V P++ TF +++ AC+  
Sbjct: 261 QFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASL 320

Query: 326 GLVDQG 331
            L++ G
Sbjct: 321 VLLNLG 326



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 139/295 (47%), Gaps = 28/295 (9%)

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           GK++H H L++    ++   N +L+ Y+  G L     LF +MP  N VS+ T+  G++ 
Sbjct: 22  GKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFS- 80

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL--SV 244
           R    +           +  E N+     +L    S+        VH+Y+   Y L    
Sbjct: 81  RSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYV---YKLGHQA 137

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
              VG A+I+ Y  CG+V  A QVF+ + +KD +SW+ +++  A N C   +L LF  M 
Sbjct: 138 DAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMR 197

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY----EIVPQMQHYA--CVVDMY 358
           I    P++ T  A + +C+       GL  FK   +V+    ++      Y    ++++Y
Sbjct: 198 IMGYRPNNFTISAALKSCN-------GLEAFKVGKSVHGCALKVCYDRDLYVGIALLELY 250

Query: 359 GRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND------EMFDRIRQDLV 407
            ++G + EA+ F  EMP + +   W  +++  R  ++D      E+F R+RQ  V
Sbjct: 251 TKSGEIAEAQQFFEEMP-KDDLIPWSLMIS--RYAQSDKSKEALELFCRMRQSSV 302



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 80/188 (42%), Gaps = 5/188 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML         T++  L+A +     +   +IH+  I+  +  D  + NSL+  Y     
Sbjct: 399 MLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGR 458

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAI---DMFCGIDVKPNANTLVSVLSA 117
           I  A   F+ +   D VSW  +I G S  G   EA+   DM    + KPN  T V VLSA
Sbjct: 459 IDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSA 518

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI-RCGSLASCGYLFVKMP-KRNVV 175
           CS+      G+A     L++      I     + + + R G       L  ++P + +V+
Sbjct: 519 CSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVM 578

Query: 176 SWTTMIGG 183
            W  ++G 
Sbjct: 579 VWRALLGA 586


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  274 bits (701), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 150/456 (32%), Positives = 264/456 (57%), Gaps = 7/456 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +T+   L+ CS         +IH  V++ G   ++++ + L+  Y  +  +  A +IF
Sbjct: 472 NQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIF 531

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   DVVSWT +I+G ++     EA+++F  +    +  +     S +SAC+ + +  
Sbjct: 532 RRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALN 591

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ IHA +  +   +++ + NA++  Y RCG +    + F K+  ++ +SW ++I G+A
Sbjct: 592 QGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFA 651

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSV 244
           + G C+EA+S+F +M K  + E N  T    +SA ++++ +  GK +H+ I  T +D   
Sbjct: 652 QSGHCEEALSLFSQMSKAGQ-EINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSET 710

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
              V N +I +Y KCG++  A + F  +  K++ISW+ +++G + +G G +AL LF  M 
Sbjct: 711 E--VSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMK 768

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
              V P+ VTF+ ++SACSH GLVD+G+  F++M  V+ +VP+ +HYACVVD+ GR+GLL
Sbjct: 769 QLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLL 828

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
             A  F+ EMPI+ +  V   LL+AC +H+N ++ +     L+  +     T+ L+SN +
Sbjct: 829 SRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMY 888

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           A   +W   ++ R  ++  G+KK+ G SWIEVN S+
Sbjct: 889 AVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSV 924



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 200/361 (55%), Gaps = 8/361 (2%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           Y F+  L AC+    ++   ++H  V++ G   + ++ N+L+  Y  + +   A Q+FN+
Sbjct: 272 YIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNA 331

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLG 127
           ++  D VS+ ++ISGLS+ G+  +A+++F   C   +KP+  T+ S+LSACSS+ +  +G
Sbjct: 332 MLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVG 391

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           K  H+++++    ++IIL+ A+LD Y++C  + +    F+     NVV W  M+  Y   
Sbjct: 392 KQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLL 451

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSVSN 246
               E+  +F +M+  +  EPN+ T  ++L  CSS+ A+  G+ +H+ +  T +  +V  
Sbjct: 452 DNLNESFKIFTQMQ-MEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNV-- 508

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            V + +I+MY K G +  A+++F  L  KD +SW+ +I+G A +    +AL LF  M   
Sbjct: 509 YVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQ 568

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
            +  D++ F + ISAC+    ++QG  +  A + V      +     +V +Y R G + +
Sbjct: 569 GIHSDNIGFASAISACAGIQALNQGQQI-HAQACVSGYSDDLSVGNALVSLYARCGKVRD 627

Query: 367 A 367
           A
Sbjct: 628 A 628



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 118/407 (28%), Positives = 205/407 (50%), Gaps = 25/407 (6%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L ACS         + H++ I+ G   DI ++ +LL  YV   DI +AH+ F S 
Sbjct: 374 TVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLST 433

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
              +VV W  ++          E+  +F  +    ++PN  T  S+L  CSSL +  LG+
Sbjct: 434 ETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGE 493

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IH   L+   + N+ + + ++D Y + G L     +F ++ +++VVSWT MI GYA+  
Sbjct: 494 QIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHE 553

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS-TRYDLSVSNL 247
              EA+++F+EM+  +    +     + +SAC+ I AL+ G+ +H+    + Y   +S  
Sbjct: 554 KFAEALNLFKEMQD-QGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLS-- 610

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           VGNA++++Y +CG V  A   F+ +  KD ISW+++ISG A +G   +AL LFS M    
Sbjct: 611 VGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAG 670

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA------CVVDMYGRA 361
              +  TF   +SA ++   V  G         ++ ++ +  H +       ++ +Y + 
Sbjct: 671 QEINSFTFGPAVSAAANVANVKLG-------KQIHAMIIKTGHDSETEVSNVLITLYAKC 723

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQ 404
           G +++AE    EMP + E S W A+L     H +      +F+ ++Q
Sbjct: 724 GNIDDAERQFFEMPEKNEIS-WNAMLTGYSQHGHGFKALSLFEDMKQ 769



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 204/400 (51%), Gaps = 10/400 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAH-PHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK 59
           ML      +  T+   L+ C     P     +IHA  I +G+ + +F+ N L+  Y    
Sbjct: 160 MLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNG 219

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLS 116
            + SA ++F+ +   D VSW  ++SGLS+ G  +EA+ +FC +    V P      SVLS
Sbjct: 220 FLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLS 279

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
           AC+ +  +K+G+ +H   L+        + NA++  Y R G+      +F  M +R+ VS
Sbjct: 280 ACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVS 339

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           + ++I G +++G+  +A+ +F++M      +P+  T+ ++LSACSS+ AL  GK  HSY 
Sbjct: 340 YNSLISGLSQQGYSDKALELFKKM-CLDCLKPDCVTVASLLSACSSVGALLVGKQFHSY- 397

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
           + +  +S   ++  A++++YVKC D+  A + F     ++ + W+ ++    +     ++
Sbjct: 398 AIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNES 457

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVPQMQHYACVV 355
            ++F+ M +  + P+  T+ +++  CS    VD G  I  + + T ++    +   + ++
Sbjct: 458 FKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVS--SVLI 515

Query: 356 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN 395
           DMY + G L+ A    R +  E +   W A++     H  
Sbjct: 516 DMYAKLGKLDHALKIFRRLK-EKDVVSWTAMIAGYAQHEK 554



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 127/280 (45%), Gaps = 20/280 (7%)

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCG 163
           V+ N+ T + +L  C S      G  +H   L+      ++L   ++D YI  G L    
Sbjct: 64  VRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAV 123

Query: 164 YLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS- 222
            +F +MP R +  W  ++  +         + +F+ M + K  +P+E T   VL  C   
Sbjct: 124 TVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEK-VKPDERTYAGVLRGCGGG 182

Query: 223 -ISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWS 281
            +      K     I+  Y+ S+   V N +I++Y K G +  A +VF+ L  +D +SW 
Sbjct: 183 DVPFHCVEKIHARTITHGYENSL--FVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWV 240

Query: 282 TVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS-----HGGLVDQGLILFK 336
            ++SGL+ +GC  +A+ LF  M  + V+P    F +++SAC+       G    GL+L +
Sbjct: 241 AMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQ 300

Query: 337 AMSTVYEIVPQMQHYAC--VVDMYGRAGLLEEAEAFIREM 374
             S        ++ Y C  +V +Y R G    AE     M
Sbjct: 301 GFS--------LETYVCNALVTLYSRLGNFIPAEQVFNAM 332


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  274 bits (701), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 148/418 (35%), Positives = 244/418 (58%), Gaps = 10/418 (2%)

Query: 46  FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI--- 102
           F+ N L++ YV    +  A  +F+ +   +VVSWTT+IS  S    + +A++    +   
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 103 DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC 162
            V+PN  T  SVL AC  L + +    +H   ++   ++++ + +A++D Y R G L + 
Sbjct: 61  GVRPNMFTYSSVLRACDGLFNLR---QLHCCIIKIGLDSDVFVRSALIDVYSRWGELENA 117

Query: 163 GYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS 222
             +F +M   ++V W+++I G+A+     EA+ +F+ M++       + TL +VL AC+ 
Sbjct: 118 LRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFL-AQQTTLTSVLRACTG 176

Query: 223 ISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWST 282
           ++ L  G+ VH ++  +YD  +  ++ NA+++MY KCG +  A  VF  +  KD ISWST
Sbjct: 177 LALLELGRQVHVHV-LKYDQDL--ILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWST 233

Query: 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 342
           +I+GLA NG  ++AL+LF  M +  + P+ VT + ++ ACSH GLV++GL  F +M  ++
Sbjct: 234 MIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELF 293

Query: 343 EIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRI 402
            I P  +HY C++D+ GRAG L EA   I EM  E +   W ALLNACR+HRN ++    
Sbjct: 294 GIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHA 353

Query: 403 RQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            + ++       GT+ L+SN +A   RW D  ++R  +   G+KK+ GCSWIEV+  I
Sbjct: 354 AKQILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQI 411



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 157/283 (55%), Gaps = 12/283 (4%)

Query: 9   NHYTFTQALKACS-LAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           N +T++  L+AC  L +  Q    +H  +I+ G   D+F++++L+  Y    ++ +A ++
Sbjct: 65  NMFTYSSVLRACDGLFNLRQ----LHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRV 120

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSH 124
           F+ +V  D+V W++II+G ++     EA+ +F  +          TL SVL AC+ L   
Sbjct: 121 FDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALL 180

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           +LG+ +H H L+   + ++IL+NA+LD Y +CGSL     +FV+M +++V+SW+TMI G 
Sbjct: 181 ELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGL 238

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           A+ G+ KEA+ +F+ M K    +PN  T+V VL ACS    +  G Y    +   + +  
Sbjct: 239 AQNGYSKEALKLFESM-KVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDP 297

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFN-MLAYKDKISWSTVISG 286
                  +I++  + G +  A+ + N M    D ++W  +++ 
Sbjct: 298 GREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNA 340


>gi|242082594|ref|XP_002441722.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
 gi|241942415|gb|EES15560.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
          Length = 528

 Score =  274 bits (701), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 145/465 (31%), Positives = 259/465 (55%), Gaps = 37/465 (7%)

Query: 31  EIHAHVIEYG-HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
            IHA  I +G H H   +   +   Y     +  A ++F+ +  PD++S+T+++S   + 
Sbjct: 32  RIHALAIAHGLHPHQQSVSCKIFRCYADFGRVADARKLFDEIPNPDLISFTSLMSLHLQL 91

Query: 90  GFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
              +EAI +F  +     +P+   +V  LSA S      +G+A+H    R   +  +++ 
Sbjct: 92  DNQREAISLFARVVAAGHRPDGFAVVGALSASSGAGDQVVGRAVHGLIFRLGLDGEVVVG 151

Query: 147 NAILDFYIRCGSLASC--------------------GYL-----------FVKMPKRNVV 175
           NA++D Y +CG   S                     GY+           F ++P R+VV
Sbjct: 152 NALIDMYSQCGKFESAVKVFDRMSLKDEVTWGSMLHGYIKCAGVDSALSFFDQVPVRSVV 211

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           +WT +I G+ +      A+ +F  M   +   P   T+V VLSAC+ I AL  G+ +H Y
Sbjct: 212 AWTALITGHVQGRQPVRALELFGRM-VLEGHRPTHVTIVGVLSACADIGALDLGRVIHGY 270

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
             ++ + S++ +V NA+++MY K G + +A  VF  +  KD  +W+T+IS   + G G++
Sbjct: 271 -GSKCNASLNIIVSNALMDMYAKSGHIEMAFSVFQEVQSKDSFTWTTMISCCTVQGDGKK 329

Query: 296 ALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVV 355
           AL+LF  M+   V P+ VTF++++SACSH GL+++G+ LF  M  +Y+I P ++HY C++
Sbjct: 330 ALELFQDMLRAGVVPNSVTFVSVLSACSHSGLIEEGIELFDRMRQLYKIDPLLEHYGCMI 389

Query: 356 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVG 415
           D+ GR GLLEEAEA I +M +E +  +W +LL+AC +  N+ + +   +++V ++    G
Sbjct: 390 DLLGRGGLLEEAEALIADMNVEPDIVIWRSLLSACLVRGNNRLAEIAGKEIVKREPGDDG 449

Query: 416 TFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            + L+ N +A +++W +  ++R ++  + + KK GCSWIE++ ++
Sbjct: 450 VYVLLWNMYASSNKWREAREMRQQMLSLKIFKKPGCSWIEIDGAV 494



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 145/343 (42%), Gaps = 37/343 (10%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +    AL A S A        +H  +   G   ++ + N+L+  Y       SA ++F+ 
Sbjct: 114 FAVVGALSASSGAGDQVVGRAVHGLIFRLGLDGEVVVGNALIDMYSQCGKFESAVKVFDR 173

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV-------------------------- 104
           +   D V+W +++ G  KC     A+  F  + V                          
Sbjct: 174 MSLKDEVTWGSMLHGYIKCAGVDSALSFFDQVPVRSVVAWTALITGHVQGRQPVRALELF 233

Query: 105 --------KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRC 156
                   +P   T+V VLSAC+ + +  LG+ IH +  +     NII+ NA++D Y + 
Sbjct: 234 GRMVLEGHRPTHVTIVGVLSACADIGALDLGRVIHGYGSKCNASLNIIVSNALMDMYAKS 293

Query: 157 GSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNV 216
           G +     +F ++  ++  +WTTMI     +G  K+A+ +FQ+M +     PN  T V+V
Sbjct: 294 GHIEMAFSVFQEVQSKDSFTWTTMISCCTVQGDGKKALELFQDMLRAG-VVPNSVTFVSV 352

Query: 217 LSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF-NMLAYK 275
           LSACS    +  G  +   +   Y +         +I++  + G +  A  +  +M    
Sbjct: 353 LSACSHSGLIEEGIELFDRMRQLYKIDPLLEHYGCMIDLLGRGGLLEEAEALIADMNVEP 412

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIAL 318
           D + W +++S   + G  R A ++    I+     DD  ++ L
Sbjct: 413 DIVIWRSLLSACLVRGNNRLA-EIAGKEIVKREPGDDGVYVLL 454


>gi|224137724|ref|XP_002322628.1| predicted protein [Populus trichocarpa]
 gi|222867258|gb|EEF04389.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  274 bits (701), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 155/435 (35%), Positives = 247/435 (56%), Gaps = 12/435 (2%)

Query: 28  KALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS 87
           KA+E    V E  H  ++   N+++   V    +  A + F+ +   DV+SWTT++ GL+
Sbjct: 87  KAIE----VFERMHERNMVSWNAVIAALVQCGRVEEARRRFDEMPKRDVISWTTMVMGLA 142

Query: 88  KCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
           + G   EA  +F   D  P  N +           + +L +A        + E N+   N
Sbjct: 143 RSGRVDEARKVF---DRMPERNVVSWNAMVTGYAKNMRLDEAFDL--FERMPERNLSSWN 197

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
            ++  +I+ G LA    +F +MP++NVVSWTTMI GY + G  + A+ VF EM K   A 
Sbjct: 198 TMITGFIQNGELAWARKVFNEMPEKNVVSWTTMITGYVQEGESESALKVFVEMIKDGGAR 257

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
           PNE T VNVL ACS ++ L  G+ VH  IS          V +A++NMY KCG++ IA +
Sbjct: 258 PNEGTFVNVLGACSDMAGLGEGQQVHLLISKSV-YQDRTFVASALLNMYSKCGELSIARK 316

Query: 268 VFN--MLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
           +F+  +++ +D + W+ +I+  A +GCG +A++LF  M      P+DV+++ L+SACSH 
Sbjct: 317 IFDDVVISQRDLVLWNGMIAAYAHHGCGMEAIELFEDMQGLGFKPNDVSYVELLSACSHA 376

Query: 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 385
           GLVD+GL  F  +     I  +  H+AC+VD+ GRAG L+EA  FI+++  +A  S+WG 
Sbjct: 377 GLVDEGLNYFDELGRDNSIQLREDHHACLVDLCGRAGRLKEAYDFIKQLGTKASSSIWGG 436

Query: 386 LLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445
           LL  C  H + E+     ++L  +   + GT+ L+SN +A   +W + +++R +++  GL
Sbjct: 437 LLAGCNAHGDLEIGQLAAKELEKEDPENAGTYLLLSNIYASGRKWREASRVRLKMKEKGL 496

Query: 446 KKKTGCSWIEVNPSI 460
           KK+ GCSWIEV   +
Sbjct: 497 KKQPGCSWIEVGNRV 511



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 159/352 (45%), Gaps = 48/352 (13%)

Query: 75  DVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSL------------- 121
           DVV+WT +ISG  KCG   +A  +F  +D   +  T  ++LS    L             
Sbjct: 5   DVVTWTAVISGYIKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAERLFEVM 64

Query: 122 ----------------VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYL 165
                            + ++ KAI       ++E N++  NA++   ++CG +      
Sbjct: 65  PVKNVVSWNTMIDGYGKNREVDKAIEV--FERMHERNMVSWNAVIAALVQCGRVEEARRR 122

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
           F +MPKR+V+SWTTM+ G A  G   EA  VF  M +            NV+S  + ++ 
Sbjct: 123 FDEMPKRDVISWTTMVMGLARSGRVDEARKVFDRMPER-----------NVVSWNAMVTG 171

Query: 226 LSFGKYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVI 284
            +    +         +   NL   N +I  +++ G++  A +VFN +  K+ +SW+T+I
Sbjct: 172 YAKNMRLDEAFDLFERMPERNLSSWNTMITGFIQNGELAWARKVFNEMPEKNVVSWTTMI 231

Query: 285 SGLAMNGCGRQALQLFSLMIIN-AVFPDDVTFIALISACSH-GGLVDQGLILFKAMSTVY 342
           +G    G    AL++F  MI +    P++ TF+ ++ ACS   GL +   +      +VY
Sbjct: 232 TGYVQEGESESALKVFVEMIKDGGARPNEGTFVNVLGACSDMAGLGEGQQVHLLISKSVY 291

Query: 343 EIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPI-EAEWSVWGALLNACRIH 393
           +   +    + +++MY + G L  A     ++ I + +  +W  ++ A   H
Sbjct: 292 Q--DRTFVASALLNMYSKCGELSIARKIFDDVVISQRDLVLWNGMIAAYAHH 341



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 113/240 (47%), Gaps = 22/240 (9%)

Query: 138 LNENNIILDNAILDFYIRCGSLASCGYLFVKMPK-RNVVSWTTMIGGYAERGFCKEAVSV 196
           ++E +++   A++  YI+CG +     LF ++   ++VV+WT M+ GY      +EA  +
Sbjct: 1   MHERDVVTWTAVISGYIKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAERL 60

Query: 197 FQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG-NAVINM 255
           F+ M            + NV+S  + I      + V   I     +   N+V  NAVI  
Sbjct: 61  FEVM-----------PVKNVVSWNTMIDGYGKNREVDKAIEVFERMHERNMVSWNAVIAA 109

Query: 256 YVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTF 315
            V+CG V  A + F+ +  +D ISW+T++ GLA +G   +A ++F  M    V    V++
Sbjct: 110 LVQCGRVEEARRRFDEMPKRDVISWTTMVMGLARSGRVDEARKVFDRMPERNV----VSW 165

Query: 316 IALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP 375
            A+++  +    +D+   LF+ M         +  +  ++  + + G L  A     EMP
Sbjct: 166 NAMVTGYAKNMRLDEAFDLFERMPE-----RNLSSWNTMITGFIQNGELAWARKVFNEMP 220


>gi|28558786|gb|AAO45757.1| selenium binding protein-like protein [Cucumis melo subsp. melo]
          Length = 565

 Score =  274 bits (701), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 158/461 (34%), Positives = 265/461 (57%), Gaps = 15/461 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +H+TF   LK CS          +H  +++ G   D++  + LL+ YV+  D+ S  ++F
Sbjct: 104 DHFTFPFVLKVCSAIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVF 163

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   +VV+WT++I+G       KEA+ +F  ++   V+PN  T+ + L+A +      
Sbjct: 164 EFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIH 223

Query: 126 LGKAIHAHSLRNLNEN--------NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
            GK +  + LR L  +        N+IL  AI+D Y +CG L +   LF KMP+RN+V W
Sbjct: 224 TGKLVR-YRLRQLGLDPFHTNSRFNVILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVW 282

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
            +MI  +++ G   EA+ +F +ME      PN+AT ++V+ AC+ +   S G+ +H+ + 
Sbjct: 283 NSMISAFSQYGRGAEALRLFVDMELAGFV-PNKATFLSVIRACTHLRFRSTGQSLHARV- 340

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            + +      +G A+++MY K GD   A+++F+ L  KD ++W+T+ISGLA+ G G++AL
Sbjct: 341 LKANFHEFVAIGTALMDMYAKSGDADTALKIFSKLRKKDVMAWTTMISGLAIQGKGKEAL 400

Query: 298 QLFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
            +F  M   A V PD +T+IA++ ACSH GLV++G   F +M  VY I P M+HY C++D
Sbjct: 401 NVFRRMEEEAEVAPDQITYIAVLWACSHLGLVEEGQKHFTSMMEVYGIEPTMEHYGCMID 460

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGT 416
           +  RAG  EEAE  + +MP +   ++  ++LN C ++ N  + +R++  +V  K  S G 
Sbjct: 461 LLSRAGHSEEAEELLVKMPTQPNATILSSILNGCEMYGNVGLANRVKSHIVELKNSSSGV 520

Query: 417 FALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           + L+SN  A A  WE+    RD ++   + K  G S++E+N
Sbjct: 521 YVLLSNIHAKACNWEEMKLARDILKHKKIGKTLGNSFVEMN 561



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 184/371 (49%), Gaps = 28/371 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVT--VKDIFSAHQ 66
           ++YT    L+ C      ++  +IH+ +I+   + +I   + L+ F     + DI  A  
Sbjct: 4   SYYTILSFLEKCKTM---KELKQIHSLMIKTSVVKNIIPCSRLIDFCANSELGDIEYART 60

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVS 123
           +F+      V  W ++I G    G    A+ M+  +  K   P+  T   VL  CS++  
Sbjct: 61  VFDQTDQLTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKGFYPDHFTFPFVLKVCSAIDL 120

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
              G+++H   ++   E ++   + +L+ Y+ CG L S   +F  +PK NVV+WT++I G
Sbjct: 121 LVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAG 180

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS--------- 234
           +      KEA+ +F++ME  +  EPNE T+   L+A +    +  GK V           
Sbjct: 181 FVNNDQPKEALRLFKDME-NEGVEPNEITMTTALAAAARCRDIHTGKLVRYRLRQLGLDP 239

Query: 235 -YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG 293
            + ++R+++    ++  A+++MY KCG +  A  +F+ +  ++ + W+++IS  +  G G
Sbjct: 240 FHTNSRFNV----ILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAFSQYGRG 295

Query: 294 RQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM--STVYEIVPQMQHY 351
            +AL+LF  M +    P+  TF+++I AC+H      G  L   +  +  +E V      
Sbjct: 296 AEALRLFVDMELAGFVPNKATFLSVIRACTHLRFRSTGQSLHARVLKANFHEFVAIG--- 352

Query: 352 ACVVDMYGRAG 362
             ++DMY ++G
Sbjct: 353 TALMDMYAKSG 363


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  274 bits (701), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 155/486 (31%), Positives = 255/486 (52%), Gaps = 36/486 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + ++F   LKA S        LEIH    + G + D FIQ  L+  Y + + I  A  +F
Sbjct: 120 DRFSFPSLLKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLF 179

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           + +  PD V+W  II G  + G + +A+ +F  +   D+KP++  L +VLSAC    +  
Sbjct: 180 DKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLS 239

Query: 126 LGKAIHAHSLRN-------------------------------LNENNIILDNAILDFYI 154
            G+ IH     N                               L+  ++I+  A+L  Y 
Sbjct: 240 YGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYA 299

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           + G +    ++F +M +R++V W+ MI GYAE    +EA+ +F EM + K + P++ T++
Sbjct: 300 KLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQ-KRSVPDQITML 358

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
           +V+SACS + AL+   ++H+Y+  R     +  V NA+I+MY KCG++  A +VF  +  
Sbjct: 359 SVISACSHVGALAQANWIHTYVD-RSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPR 417

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           K+ ISWS++I+  AM+G    A++LF  M    + P+ VTFI ++ AC H GLV++G  L
Sbjct: 418 KNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKL 477

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F +M   + I P  +HY C+VD+Y RA  L +A   I  MP      +WG+L++AC++H 
Sbjct: 478 FSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHG 537

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
             E+ +   + L+  +    G   ++SN +A   RW D   IR  +   G+ K+   S I
Sbjct: 538 EAELGEFAAKRLLELEPDHDGALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASSRI 597

Query: 455 EVNPSI 460
           E+N  +
Sbjct: 598 EINNQV 603



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 92/205 (44%), Gaps = 4/205 (1%)

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224
           +F ++P  +      ++   +   F ++ + ++  +        +  +  ++L A S +S
Sbjct: 76  VFSQIPNPHTHFSNQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVS 135

Query: 225 ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVI 284
           A + G  +H  ++++        +   +I MY  C  +  A  +F+ + + D ++W+ +I
Sbjct: 136 AFNHGLEIHG-LASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMII 194

Query: 285 SGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFK-AMSTVYE 343
            G   NG    AL+LF  M  + + PD V    ++SAC H G +  G  + +      Y 
Sbjct: 195 DGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYA 254

Query: 344 IVPQMQHYACVVDMYGRAGLLEEAE 368
           I   +Q    +++MY   G ++ A 
Sbjct: 255 IDSHLQ--TALINMYANCGAMDLAR 277



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 97/227 (42%), Gaps = 16/227 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML   S  +  T    + ACS      +A  IH +V   G    + + N+L+  Y    +
Sbjct: 345 MLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGN 404

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSA 117
           +  A ++F ++   +V+SW+++I+  +  G    AI +F     ++++PN  T + VL A
Sbjct: 405 LVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYA 464

Query: 118 C--SSLVSHK---LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-K 171
           C  + LV          I+ H +    E+       ++D Y R   L     L   MP  
Sbjct: 465 CGHAGLVEEGEKLFSSMINEHGISPTREHY----GCMVDLYCRANFLRKAIELIETMPFA 520

Query: 172 RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLS 218
            NV+ W +++      G   EA       ++  E EP+    + VLS
Sbjct: 521 PNVIIWGSLMSACQVHG---EAELGEFAAKRLLELEPDHDGALVVLS 564


>gi|356514477|ref|XP_003525932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 526

 Score =  274 bits (701), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 165/474 (34%), Positives = 261/474 (55%), Gaps = 46/474 (9%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKD--IFS-AHQIFNSVVFPDVVSWTTIISGLS 87
           ++HAH++        +    LL    T  D   FS A  IF  +   +     T+I G  
Sbjct: 23  QLHAHILRCRINDTPYALAPLLSVLATSNDASFFSYARSIFRHLTNRNTFMHNTMIRGYL 82

Query: 88  KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLV----SHKLGKAIHAH----SLR 136
           +C     A+  +  +    V  N  T   ++ AC +L+    S+ +G+ +H H     LR
Sbjct: 83  QCRSPLHAVSCYLSMLQNGVAVNNYTFPPLIKACIALLPSSPSNIVGRLVHGHVVKFGLR 142

Query: 137 N---------------------------LNENNIILDNAILDFYIRCGSLASCGYLFVKM 169
           N                            +  +++L  A++D Y + G++ S   +F KM
Sbjct: 143 NDPYVVSAFIEFYSVSREVDTARVLFDETSYKDVVLGTAMVDGYGKMGNVKSAREVFDKM 202

Query: 170 PKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 229
           P+RN VSW+ M+  Y+     KE +++F EM+  +  EPNE+ LV VL+AC+ + AL+ G
Sbjct: 203 PERNAVSWSAMMAAYSRVSDFKEVLALFTEMQ-NEGTEPNESILVTVLTACAHLGALTQG 261

Query: 230 KYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAM 289
            +VHSY + R+ L  + ++  A+++MY KCG V  A+ VF+ +  KD  +W+ +ISG A+
Sbjct: 262 LWVHSY-ARRFHLESNPILATALVDMYSKCGCVESALSVFDCIVDKDAGAWNAMISGEAL 320

Query: 290 NGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQ 349
           NG   ++LQLF  M  +   P++ TF+A+++AC+H  +V QGL LF+ MS+VY +VP+M+
Sbjct: 321 NGDAGKSLQLFRQMAASRTKPNETTFVAVLTACTHAKMVQQGLWLFEEMSSVYGVVPRME 380

Query: 350 HYACVVDMYGRAGLLEEAEAFIREMP---IEAEWSVWGALLNACRIHRNDEMFDRIRQDL 406
           HYACV+D+  RAG++EEAE F+ E        + +VWGALLNACRIH+N  + +R+ + L
Sbjct: 381 HYACVIDLLSRAGMVEEAEKFMEEKMGGLTAGDANVWGALLNACRIHKNIHVGNRVWKKL 440

Query: 407 VNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           V+      GT  L  N +  A    + NK+R  I  +G+KKK GCS IEV+  +
Sbjct: 441 VDMGVTDCGTHVLTYNIYREAGWDVEANKVRSRIEEVGMKKKPGCSIIEVDNEV 494



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 136/278 (48%), Gaps = 39/278 (14%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKA----LEIHAHVIEYGHLHDIFIQNSLLHFYV 56
           ML    + N+YTF   +KAC    P   +      +H HV+++G  +D ++ ++ + FY 
Sbjct: 97  MLQNGVAVNNYTFPPLIKACIALLPSSPSNIVGRLVHGHVVKFGLRNDPYVVSAFIEFYS 156

Query: 57  TVKDIFSAHQIFNSVVFPDV-------------------------------VSWTTIISG 85
             +++ +A  +F+   + DV                               VSW+ +++ 
Sbjct: 157 VSREVDTARVLFDETSYKDVVLGTAMVDGYGKMGNVKSAREVFDKMPERNAVSWSAMMAA 216

Query: 86  LSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN 142
            S+    KE + +F  +     +PN + LV+VL+AC+ L +   G  +H+++ R   E+N
Sbjct: 217 YSRVSDFKEVLALFTEMQNEGTEPNESILVTVLTACAHLGALTQGLWVHSYARRFHLESN 276

Query: 143 IILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202
            IL  A++D Y +CG + S   +F  +  ++  +W  MI G A  G   +++ +F++M  
Sbjct: 277 PILATALVDMYSKCGCVESALSVFDCIVDKDAGAWNAMISGEALNGDAGKSLQLFRQMAA 336

Query: 203 TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           ++  +PNE T V VL+AC+    +  G ++   +S+ Y
Sbjct: 337 SR-TKPNETTFVAVLTACTHAKMVQQGLWLFEEMSSVY 373


>gi|357141789|ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Brachypodium distachyon]
          Length = 555

 Score =  274 bits (701), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 157/486 (32%), Positives = 263/486 (54%), Gaps = 37/486 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACS-LAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK 59
           +L    + + +TF   LK+ S LA   +   ++HA  +  G L D+F+ N+LL  Y   +
Sbjct: 69  ILRSGDTPDRFTFPSLLKSASRLASFPRTGAQVHAQAVRRGLLVDVFVVNTLLAMYAAFR 128

Query: 60  DIFSAHQIFNSVV-FPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN-----TLVS 113
           D  S  ++F+S     D+V+W T++ G  KCG   EA  +F   +  P  N      +V 
Sbjct: 129 DTRSMREVFDSCAGVADLVTWNTMLGGYVKCGEIGEARRVF---EQMPQRNGVSWSAMVG 185

Query: 114 VLSACSSL-VSHKLGKAIHA-----------------HSLRNLNEN--------NIILDN 147
             +    L V+ ++   + A                 H L  L           N++  N
Sbjct: 186 AYAGAGELDVAREMFDEMPAIGRNVVSWNSMITGFARHGLLPLARKMFDEMPVRNLVSWN 245

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
            ++  Y   G +     LF +MP+++VVSWT MI GYA+     E + +F+ M+      
Sbjct: 246 TMVRGYAVNGEMNDARELFDRMPEKDVVSWTCMISGYAQARCYTETLELFRAMQSESNVL 305

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAI 266
           PNE T+V+VLSAC+ ++AL  G++ H++I     +  S   +G A+I+MY KCG   +A+
Sbjct: 306 PNEVTMVSVLSACAHLTALEEGRWAHAFIDKHKMVLDSEFNLGAALIDMYSKCGRTDLAV 365

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
           ++F+ L  K+  +W+ +I+GLA+NG  R ++ +F  M  +   P+ +TF+ +++AC+HGG
Sbjct: 366 KIFHSLDQKNVSAWNALITGLAVNGDVRSSIDVFEQMRRSGEKPNGITFVGVLTACAHGG 425

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 386
           LVD+G   F++M++   + P+ +HY C+VDM GRAGLLEEAE  IR MP+  +  + GAL
Sbjct: 426 LVDEGRRCFQSMASTCGVQPEAKHYGCMVDMLGRAGLLEEAEELIRSMPMVPDVMILGAL 485

Query: 387 LNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446
           L ACR+H+  ++  R++ +++       G   L+S+ +A A +W D    R  +++ G+ 
Sbjct: 486 LGACRMHKRVDVAARVQNEILGLSTQQSGCHVLISDIYAAAGKWADALYARGVLQKFGIS 545

Query: 447 KKTGCS 452
           K  G S
Sbjct: 546 KLRGSS 551


>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Glycine max]
          Length = 518

 Score =  274 bits (701), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 151/447 (33%), Positives = 242/447 (54%), Gaps = 37/447 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +++TF   LKAC+          +H  V+  G   ++ ++N+LL F+    D+  A  IF
Sbjct: 106 DNFTFPFVLKACTKLFWVNTGSAVHGRVLRLGFGSNVVVRNTLLVFHAKCGDLKVATDIF 165

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
           +     DVV+W+ +I+G ++ G    A  +F   D  P                      
Sbjct: 166 DDSDKGDVVAWSALIAGYAQRGDLSVARKLF---DEMP---------------------- 200

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
                      + +++  N ++  Y + G + S   LF + P +++VSW  +IGGY  R 
Sbjct: 201 -----------KRDLVSWNVMITVYTKHGEMESARRLFDEAPMKDIVSWNALIGGYVLRN 249

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
             +EA+ +F EM    E  P+E T++++LSAC+ +  L  G+ VH+ I       +S L+
Sbjct: 250 LNREALELFDEMCGVGEC-PDEVTMLSLLSACADLGDLESGEKVHAKIIEMNKGKLSTLL 308

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
           GNA+++MY KCG++G A++VF ++  KD +SW++VISGLA +G   ++L LF  M +  V
Sbjct: 309 GNALVDMYAKCGNIGKAVRVFWLIRDKDVVSWNSVISGLAFHGHAEESLGLFREMKMTKV 368

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD+VTF+ +++ACSH G VD+G   F  M   Y+I P ++H  CVVDM GRAGLL+EA 
Sbjct: 369 CPDEVTFVGVLAACSHAGNVDEGNRYFHLMKNKYKIEPTIRHCGCVVDMLGRAGLLKEAF 428

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
            FI  M IE    VW +LL AC++H + E+  R  + L+  +G   G + L+SN +A   
Sbjct: 429 NFIASMKIEPNAIVWRSLLGACKVHGDVELAKRANEQLLRMRGDQSGDYVLLSNVYASQG 488

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIE 455
            W+    +R  +   G+ K  G S++E
Sbjct: 489 EWDGAENVRKLMDDNGVTKNRGSSFVE 515



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 73/139 (52%), Gaps = 2/139 (1%)

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224
           +F ++P+ +   W T I G ++      AV+++ +M++ +  +P+  T   VL AC+ + 
Sbjct: 63  MFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMDQ-RSVKPDNFTFPFVLKACTKLF 121

Query: 225 ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVI 284
            ++ G  VH  +  R     + +V N ++  + KCGD+ +A  +F+     D ++WS +I
Sbjct: 122 WVNTGSAVHGRV-LRLGFGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAWSALI 180

Query: 285 SGLAMNGCGRQALQLFSLM 303
           +G A  G    A +LF  M
Sbjct: 181 AGYAQRGDLSVARKLFDEM 199


>gi|330689867|gb|AEC33263.1| putative pentatricopeptide protein [Triticum aestivum]
          Length = 644

 Score =  274 bits (701), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 175/533 (32%), Positives = 262/533 (49%), Gaps = 78/533 (14%)

Query: 5   PSSYNHYTFTQALKAC-----SLAHPHQKALEIHAHVIEYGHL-------------HDIF 46
           P+  N YT   AL+A      S  H H   L +HAH    G L             H +F
Sbjct: 71  PTLPNSYTLPLALRAATSPIASAIHAHALHLGLHAHPDVAGQLLAAYARHGRADEAHHVF 130

Query: 47  IQ----------NSLLHFYVTVKDIFSAHQIFNSVV-----FPDVVSWTTIISGLSKCGF 91
                       N+L+  Y    D  +A   F  +       PD V+WTT++S  ++CG 
Sbjct: 131 DAMPSKRATMSWNTLISAYSVCCDPNNAMATFARMAAAGEALPDAVTWTTLLSAHARCGK 190

Query: 92  HKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKL--GKAIHAHSL----------- 135
           H   +++F  +     + NA ++   LSAC       L  G+AIH + +           
Sbjct: 191 HPVVLELFGDMHRSGCEGNAESVAVALSACPYAGDLALAKGRAIHGYGVAKGVVRGYLFV 250

Query: 136 ---------------------RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKR-- 172
                                R   E N +  NA++  Y   G       + V+M +R  
Sbjct: 251 TNSLVCMYGKLGKMDDAREVFREAGERNTVTWNALITSYAAAGMCDEALNVLVRMEQRGG 310

Query: 173 ----NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
               NV+SW+ +IGG+A  G  + A+ +F+ M++ +   PN  TL  VLSAC+   A+  
Sbjct: 311 MVAPNVMSWSAVIGGFASSGDNERALELFRRMQQ-QWLSPNVVTLATVLSACTEQLAVRL 369

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
           G+ VH+  + R  +   +LV N +INMY KCG V  A  VF+ +  +D +SW+++++G  
Sbjct: 370 GREVHAD-AIRSMVDRHSLVANGLINMYAKCGRVADARTVFDGMKSRDLVSWNSMLAGYG 428

Query: 289 MNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQM 348
           M+G    AL +F+ M    V PD VTF+A++SACSH G V +G  LF  M   ++I P M
Sbjct: 429 MHGLCDDALAVFTDMAEAKVDPDGVTFVAVLSACSHAGRVSEGRRLFDQMILEHKISPSM 488

Query: 349 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVN 408
           +HY C+VD+ GRAGLL+EA  FI  MP+ A+  VWGALLN+CRIH +  M +      + 
Sbjct: 489 EHYTCMVDLLGRAGLLKEASEFIETMPMGADLCVWGALLNSCRIHGDAAMAEATIAKALQ 548

Query: 409 KKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
              V+ G   L++N +A    W+D+ ++R   R  GL+K  G SW+EV   +F
Sbjct: 549 AGVVTTGNHTLITNLYAACGMWDDSKRVRVMTREAGLRKNPGQSWVEVKNKVF 601



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 98/256 (38%), Gaps = 39/256 (15%)

Query: 170 PKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS------- 222
           P    V W  ++  +  R     A+++++ M       PN  TL   L A +S       
Sbjct: 36  PTTCAVPWNRLLRAHICRSRPDLALALYRRMRALSPTLPNSYTLPLALRAATSPIASAIH 95

Query: 223 ISALSFGKYVHSYISTR-----------------YDLSVS---NLVGNAVINMYVKCGDV 262
             AL  G + H  ++ +                 +D   S    +  N +I+ Y  C D 
Sbjct: 96  AHALHLGLHAHPDVAGQLLAAYARHGRADEAHHVFDAMPSKRATMSWNTLISAYSVCCDP 155

Query: 263 GIAIQVFNML-----AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIA 317
             A+  F  +     A  D ++W+T++S  A  G     L+LF  M  +    +  +   
Sbjct: 156 NNAMATFARMAAAGEALPDAVTWTTLLSAHARCGKHPVVLELFGDMHRSGCEGNAESVAV 215

Query: 318 LISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD----MYGRAGLLEEAEAFIRE 373
            +SAC + G  D  L   +A+         ++ Y  V +    MYG+ G +++A    RE
Sbjct: 216 ALSACPYAG--DLALAKGRAIHGYGVAKGVVRGYLFVTNSLVCMYGKLGKMDDAREVFRE 273

Query: 374 MPIEAEWSVWGALLNA 389
              E     W AL+ +
Sbjct: 274 AG-ERNTVTWNALITS 288


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  274 bits (701), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 154/418 (36%), Positives = 243/418 (58%), Gaps = 13/418 (3%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID 103
           D    N+LL  +    DI  A ++F+++   DV SW T++SGLSK G  +EA  MF  + 
Sbjct: 76  DTVSYNTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMP 135

Query: 104 VKPNA---NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNEN-NIILDNAILDFYIRCGSL 159
           V+ NA   N +V+ L ACS      +G A      RN  E  + IL  A++  Y+  G++
Sbjct: 136 VR-NAVSWNAMVAAL-ACSG----DMGAA--EDLFRNAPEKTDAILWTAMVSGYMDTGNV 187

Query: 160 ASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
                 F  MP RN+VSW  ++ GY +     +A+ VF+ M +    +PN +TL +VL  
Sbjct: 188 QKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLG 247

Query: 220 CSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS 279
           CS++SAL FG+ VH +   +  LS +  VG ++++MY KCGD+  A +VF+ ++ KD ++
Sbjct: 248 CSNLSALGFGRQVHQWC-MKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVA 306

Query: 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMS 339
           W+ +ISG A +G G QA++LF  M    V PD +T +A+++AC H GL D G+  F+ M 
Sbjct: 307 WNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQ 366

Query: 340 TVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMF 399
             Y+I PQ+ HY+C+VD+  RAGLLE A   I  MP E   S +G LL ACR+++N E  
Sbjct: 367 EAYKIEPQIDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFA 426

Query: 400 DRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +   + L+ +   + G +  ++N +A A++W D +++R  ++   + K  G SW+E+ 
Sbjct: 427 EFAARKLIEQDPQNAGAYVQLANIYAVANKWADVSRVRRWMKDNAVVKTPGYSWMEIK 484



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 91/226 (40%), Gaps = 37/226 (16%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T +  L  CS         ++H   ++     ++ +  SLL  Y    D+  A ++F
Sbjct: 237 NASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVF 296

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           + +   D+V+W  +ISG ++ G   +AI +F  +    V P+  TL++VL+AC       
Sbjct: 297 DEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTAC------- 349

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
               IH                 + DF I+C       Y      +  +  ++ M+    
Sbjct: 350 ----IH---------------TGLCDFGIQCFETMQEAYKI----EPQIDHYSCMVDLLC 386

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKY 231
             G  + AV++   M      EP+ +    +L+AC     L F ++
Sbjct: 387 RAGLLERAVNMIHSM----PFEPHPSAYGTLLTACRVYKNLEFAEF 428


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  274 bits (701), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 157/520 (30%), Positives = 270/520 (51%), Gaps = 71/520 (13%)

Query: 10  HYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFY-------------- 55
            +T T  L +C++        ++H+ V++ G    + + NS+L+ Y              
Sbjct: 164 QFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFE 223

Query: 56  -VTVKDIFS----------------AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDM 98
            + V+ + S                A  +F S+    +VSW  +I+G ++ G   +A+ +
Sbjct: 224 RMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKL 283

Query: 99  FCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNL---------------- 138
           F  +     + P+  T+ SVLSAC++L + ++GK +HA+ LR                  
Sbjct: 284 FSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYA 343

Query: 139 -----------------NENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
                             + N+I   A+L+ Y++ G + S   +F  M  R+VV+WT MI
Sbjct: 344 KSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMI 403

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
            GY + G   EA+ +F+ M  T   EPN  TL  VLS C+S++ L +GK +H   + R  
Sbjct: 404 VGYEQNGRNDEAIDLFRSM-ITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCR-AIRSL 461

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDKISWSTVISGLAMNGCGRQALQLF 300
           L  S+ V NA+I MY + G    A ++F+ + + K+ I+W+++I  LA +G G +A+ LF
Sbjct: 462 LERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLF 521

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
             M+   V PD +T++ ++SACSH G V++G   +  +   ++I P+M HYAC+VD+  R
Sbjct: 522 EEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLAR 581

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           AGL  EA+ FIR MP+E +   WG+LL+ACR+H+N E+ +   + L++    + G ++ +
Sbjct: 582 AGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAI 641

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +N ++   RW D  +I    +   ++K+TG SW  +   I
Sbjct: 642 ANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKI 681



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 105/423 (24%), Positives = 186/423 (43%), Gaps = 71/423 (16%)

Query: 43  HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI 102
            ++F  NSLL  +     +  A  +F  +   D VSWT ++ GL++ G   EAI     +
Sbjct: 96  RNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDM 155

Query: 103 DVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSL 159
                 P   TL +VLS+C+   +  +G+ +H+  ++    + + + N++L+ Y +CG  
Sbjct: 156 TADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDA 215

Query: 160 ASCGY-------------------------------LFVKMPKRNVVSWTTMIGGYAERG 188
            +                                  LF  MP R++VSW  MI GY + G
Sbjct: 216 ETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNG 275

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
              +A+ +F  M       P+E T+ +VLSAC+++  +  GK VH+YI  R +++ ++ V
Sbjct: 276 LDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYI-LRTEMAYNSQV 334

Query: 249 GNAVINM---------------------------------YVKCGDVGIAIQVFNMLAYK 275
            NA+I+                                  YVK GD+  A ++F ++  +
Sbjct: 335 TNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNR 394

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG-LIL 334
           D ++W+ +I G   NG   +A+ LF  MI     P+  T  A++S C+    +D G  I 
Sbjct: 395 DVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIH 454

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
            +A+ ++ E    + +   ++ MY R+G    A     ++    E   W +++ A   H 
Sbjct: 455 CRAIRSLLERSSSVSN--AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHG 512

Query: 395 NDE 397
             E
Sbjct: 513 QGE 515



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 135/292 (46%), Gaps = 44/292 (15%)

Query: 118 CSSLVSHKLGKAIHAHSLRN---------LNENNIILDNAILDFYIRCGSLASCGYLFVK 168
           C++L+S+    A  A  LR+         L   N+   N++L  + + G LA    +F +
Sbjct: 64  CNNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAE 123

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           MP+R+ VSWT M+ G    G   EA+    +M       P + TL NVLS+C+   A + 
Sbjct: 124 MPERDAVSWTVMVVGLNRAGRFGEAIKTLLDM-TADGFTPTQFTLTNVLSSCAVTQAGAV 182

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK----------- 277
           G+ VHS++  +  L     V N+V+NMY KCGD   A  VF  +  +             
Sbjct: 183 GRKVHSFV-VKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNT 241

Query: 278 --------------------ISWSTVISGLAMNGCGRQALQLFSLMI-INAVFPDDVTFI 316
                               +SW+ +I+G   NG   +AL+LFS M+  +++ PD+ T  
Sbjct: 242 HLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTIT 301

Query: 317 ALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
           +++SAC++ G V  G  +  A     E+    Q    ++  Y ++G +E A 
Sbjct: 302 SVLSACANLGNVRIGKQV-HAYILRTEMAYNSQVTNALISTYAKSGSVENAR 352



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 100/240 (41%), Gaps = 25/240 (10%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M++C    N YT    L  C+         +IH   I         + N+++  Y     
Sbjct: 422 MITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGS 481

Query: 61  IFSAHQIFNSVVF-PDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLS 116
              A ++F+ V +  + ++WT++I  L++ G  +EA+ +F  +    V+P+  T V VLS
Sbjct: 482 FPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLS 541

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNA----ILDFYIRCGSLASCGYLFVKMP-K 171
           ACS       GK  +       NE+ I  + +    ++D   R G  +       +MP +
Sbjct: 542 ACSHAGFVNEGKRYYDQI---KNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVE 598

Query: 172 RNVVSWTTMIGGYAERGFC---KEAVSVFQEMEKTKEAEPNE----ATLVNVLSACSSIS 224
            + ++W +++        C   K A       EK    +PN     + + NV SAC   S
Sbjct: 599 PDAIAWGSLLSA------CRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWS 652


>gi|15221400|ref|NP_172104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174948|sp|Q9LND4.1|PPR14_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06140, mitochondrial; Flags: Precursor
 gi|8810476|gb|AAF80137.1|AC024174_19 Contains similarity to a hypothetical protein F24K9.13 gi|6006885
           from Arabidopsis thaliana gb|AC008153 and contains
           multiple PPR PF|01535 repeats [Arabidopsis thaliana]
 gi|332189825|gb|AEE27946.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 558

 Score =  274 bits (701), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 152/452 (33%), Positives = 256/452 (56%), Gaps = 6/452 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +    A+KAC      +  + IH   ++ G   D ++  SL+  Y  +  + SA ++F
Sbjct: 108 DSFNLVFAIKACVGLGLLENGILIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVF 167

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHK 125
           + +   + V W  ++ G  K     E   +FC      +  +A TL+ ++ AC ++ + K
Sbjct: 168 DEIPVRNSVLWGVLMKGYLKYSKDPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAGK 227

Query: 126 LGKAIHAHSLR-NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           +GK +H  S+R +  + +  L  +I+D Y++C  L +   LF     RNVV WTT+I G+
Sbjct: 228 VGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGF 287

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           A+     EA  +F++M + +   PN+ TL  +L +CSS+ +L  GK VH Y+  R  + +
Sbjct: 288 AKCERAVEAFDLFRQMLR-ESILPNQCTLAAILVSCSSLGSLRHGKSVHGYM-IRNGIEM 345

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
             +   + I+MY +CG++ +A  VF+M+  ++ ISWS++I+   +NG   +AL  F  M 
Sbjct: 346 DAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMK 405

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
              V P+ VTF++L+SACSH G V +G   F++M+  Y +VP+ +HYAC+VD+ GRAG +
Sbjct: 406 SQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEI 465

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
            EA++FI  MP++   S WGALL+ACRIH+  ++   I + L++ +      + L+SN +
Sbjct: 466 GEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLLSMEPEKSSVYVLLSNIY 525

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           A A  WE  N +R ++   G +K  G S  EV
Sbjct: 526 ADAGMWEMVNCVRRKMGIKGYRKHVGQSATEV 557



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 182/402 (45%), Gaps = 34/402 (8%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           P +      T   +A +L H  Q    +HA VI +G   ++ + +SL + Y+    +  A
Sbjct: 3   PVNRARALLTILSQAKTLNHTQQ----VHAKVIIHGFEDEVVLGSSLTNAYIQSNRLDFA 58

Query: 65  HQIFNSVVF--PDVVSWTTIISGLSK---CGF------------HKEAIDMFCGIDVKPN 107
              FN +     +  SW TI+SG SK   C +            H + +D F        
Sbjct: 59  TSSFNRIPCWKRNRHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHCDGVDSF-------- 110

Query: 108 ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFV 167
              LV  + AC  L   + G  IH  +++N  + +  +  ++++ Y + G++ S   +F 
Sbjct: 111 --NLVFAIKACVGLGLLENGILIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFD 168

Query: 168 KMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 227
           ++P RN V W  ++ GY +     E   +F  M  T  A  +  TL+ ++ AC ++ A  
Sbjct: 169 EIPVRNSVLWGVLMKGYLKYSKDPEVFRLFCLMRDTGLA-LDALTLICLVKACGNVFAGK 227

Query: 228 FGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGL 287
            GK VH     R  +  S+ +  ++I+MYVKC  +  A ++F     ++ + W+T+ISG 
Sbjct: 228 VGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGF 287

Query: 288 AMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 347
           A      +A  LF  M+  ++ P+  T  A++ +CS  G +  G  +   M     I   
Sbjct: 288 AKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGYM-IRNGIEMD 346

Query: 348 MQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
             ++   +DMY R G ++ A      MP E     W +++NA
Sbjct: 347 AVNFTSFIDMYARCGNIQMARTVFDMMP-ERNVISWSSMINA 387


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  274 bits (701), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 159/430 (36%), Positives = 236/430 (54%), Gaps = 38/430 (8%)

Query: 64  AHQIFNSV--VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSAC 118
           A QIF  V    P+   W + +  L++     +AI +F  +   DV P+  T  SVL AC
Sbjct: 79  AQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRAC 138

Query: 119 SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVV--- 175
            +L+    G+ +H    +    +N+ L N I+  Y  CG +     LF KMP+R+VV   
Sbjct: 139 LNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWN 198

Query: 176 ----------------------------SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
                                       SWT+MI GY + G  KEA+ +F +ME+    +
Sbjct: 199 IMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAG-VK 257

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
            NE T+V VL+AC+ + AL  G  +H Y S R+    +  + N +I+MYVKCG +  A +
Sbjct: 258 CNEVTVVAVLAACADLGALDLGMRIHEY-SNRHGFKRNVRISNTLIDMYVKCGCLEEACK 316

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           VF  +  +  +SWS +I GLAM+G   +AL+LFS M    + P+ VTFI L+ ACSH GL
Sbjct: 317 VFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGL 376

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           + +G   F +M+  Y I+PQ++HY C+VD+  RAGLL EA  FI  MP++    VWGALL
Sbjct: 377 ISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALL 436

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
            ACR+H+N EM +   + L+    ++ G + ++SN +A A RWEDT ++R  ++   +KK
Sbjct: 437 GACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKK 496

Query: 448 KTGCSWIEVN 457
             G S I V+
Sbjct: 497 TPGWSSITVD 506



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 154/318 (48%), Gaps = 39/318 (12%)

Query: 4   CPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFS 63
           CP ++   T +  L+AC           +H  V + G   ++++QN ++H Y +  ++  
Sbjct: 125 CPDTF---TCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGE 181

Query: 64  AHQIFNSVVFPDVV-------------------------------SWTTIISGLSKCGFH 92
           A  +F  +   DVV                               SWT++I+G  +CG  
Sbjct: 182 ARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKA 241

Query: 93  KEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAI 149
           KEAI +F  ++   VK N  T+V+VL+AC+ L +  LG  IH +S R+  + N+ + N +
Sbjct: 242 KEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTL 301

Query: 150 LDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN 209
           +D Y++CG L     +F +M +R VVSW+ MIGG A  G  +EA+ +F +M +    EPN
Sbjct: 302 IDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVG-IEPN 360

Query: 210 EATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-V 268
             T + +L ACS +  +S G+   + ++  Y +         ++++  + G +  A + +
Sbjct: 361 GVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFI 420

Query: 269 FNMLAYKDKISWSTVISG 286
            NM    + + W  ++  
Sbjct: 421 LNMPMKPNGVVWGALLGA 438


>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
 gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
          Length = 531

 Score =  274 bits (701), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 145/448 (32%), Positives = 245/448 (54%), Gaps = 38/448 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +  TF   L+AC+     +   ++HAHV++ G   D F++N+L+  + T  D+ +A  +F
Sbjct: 113 DKRTFPFVLRACAAMGASETGAQVHAHVVKAGCESDAFVRNALIGMHATCGDLGAAAALF 172

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
           +     D V+W+ +ISG ++ G    A ++F    VK                       
Sbjct: 173 DGEAREDAVAWSAMISGFARRGDIGAARELFDESPVK----------------------- 209

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
                        +++  N ++  Y + G +A    LF   P R+VVSW  MI GY   G
Sbjct: 210 -------------DLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCG 256

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD-LSVSNL 247
             K+A+ +F++M+   E +P+  T++++LSAC+    +  G+ +H ++S R+  +  S +
Sbjct: 257 SHKQAMELFEQMQAMGE-KPDTVTMLSLLSACADSGDMDAGRRLHRFLSGRFSRIGPSTV 315

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           +GNA+I+MY KCG +  A++VF ++  K+  +W+++I GLA++G   +A+ +F  M+   
Sbjct: 316 LGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHVTEAIDVFQKMLQGN 375

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           V PD++TF+A++ ACSHGG+VD+G   F  M   Y I P ++HY C+VDM  RAGLL+EA
Sbjct: 376 VKPDEITFVAVLVACSHGGMVDKGHEYFNLMQQRYMIEPNVKHYGCMVDMLSRAGLLKEA 435

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
             FI  M IE    +W  LL ACRIH   E+ +   Q+L+  +  + G F L+SN +A  
Sbjct: 436 FEFIGTMKIEPNPVIWRTLLGACRIHGELELAEHANQELLKARSDASGDFVLLSNIYASV 495

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
             W  +  +R  +   G+ K+ GC+ ++
Sbjct: 496 GEWLGSENMRKLMDDSGVNKEAGCAVVD 523



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 166/377 (44%), Gaps = 58/377 (15%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ--IFNSVVFPDVVSWTTIISGLSK 88
           ++HA ++  G L D      L+          +AH   +F+ +  PD   + T+I G + 
Sbjct: 26  QVHALMVLRGFLSDPSALRELIFASSVGVRGGTAHARLVFDRIPHPDRFMYNTLIRGAAH 85

Query: 89  CGFHKEAIDMF---------CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLN 139
               ++A+ ++         CG  V+P+  T   VL AC+++ + + G  +HAH ++   
Sbjct: 86  SYAPRDAVSIYARMARHSAGCGGGVRPDKRTFPFVLRACAAMGASETGAQVHAHVVKAGC 145

Query: 140 ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQE 199
           E++  + NA++  +  CG L +   LF    + + V+W+ MI G+A RG    A  +F E
Sbjct: 146 ESDAFVRNALIGMHATCGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAARELFDE 205

Query: 200 MEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG-NAVINMYVK 258
                                                       V +LV  N +I  Y K
Sbjct: 206 S------------------------------------------PVKDLVSWNVMITAYAK 223

Query: 259 CGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIAL 318
            GD+  A ++F+    +D +SW+ +ISG    G  +QA++LF  M      PD VT ++L
Sbjct: 224 LGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSHKQAMELFEQMQAMGEKPDTVTMLSL 283

Query: 319 ISACSHGGLVDQGLILFKAMSTVY-EIVPQMQHYACVVDMYGRAGLLEEA-EAFIREMPI 376
           +SAC+  G +D G  L + +S  +  I P       ++DMY + G +  A E F   +  
Sbjct: 284 LSACADSGDMDAGRRLHRFLSGRFSRIGPSTVLGNALIDMYAKCGSMTSALEVFW--LMQ 341

Query: 377 EAEWSVWGALLNACRIH 393
           +   S W +++    +H
Sbjct: 342 DKNVSTWNSIIGGLALH 358


>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
          Length = 688

 Score =  274 bits (700), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 165/456 (36%), Positives = 258/456 (56%), Gaps = 24/456 (5%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S N +T    LKAC     + +A+ +H   I+ G    +F+QN+L+  YV    I  A +
Sbjct: 211 SPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARK 270

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKL 126
           +F+ +    +VSW ++I          E   +   I V+   N L  + + C +L S   
Sbjct: 271 LFDDITDKTLVSWNSMI----------EITGVKIDIIVR---NALXDMYAKCGNLHS--- 314

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
            +AI   +     E N++   +++  Y + GS+     +F +MP +NVVSW +MI  Y  
Sbjct: 315 AQAIFDRT----QEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLR 370

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSVS 245
            G  +EA+ +F +M  ++   P+EATLV++L+ACS +  L  GK +H+YI S +    V+
Sbjct: 371 EGQYREALDLFNKMRNSRVV-PDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVT 429

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             + N++I+MY KCG V  A+ +F  +  K+ +SW+ +I  LA++GCG +A++LF  M  
Sbjct: 430 --LYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQA 487

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
           +   PD++T   L+SACSH GLVD GL  F  M  +Y +  +++HYAC+VD+ GR GLL 
Sbjct: 488 DGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVXREIEHYACMVDLLGRGGLLG 547

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EA   I  MP++ +  VWGALL ACRIH N E+  +I + L+  +  S G + L+SN + 
Sbjct: 548 EAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYW 607

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
            A RWED  KIR  +   G+KK    S IE++  I+
Sbjct: 608 EAQRWEDVKKIRKLMIDRGIKKGRAISSIEIDGCIY 643


>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  274 bits (700), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 151/411 (36%), Positives = 243/411 (59%), Gaps = 15/411 (3%)

Query: 49  NSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNA 108
           N+++  Y     I SA  +F  +   +VVSW T++S L++CG  +EA  +F   D  P  
Sbjct: 165 NTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLF---DRMPER 221

Query: 109 NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168
           + +     + +++++  L +A+       + E ++   N ++   I+ G L     LF +
Sbjct: 222 DVI-----SWTAMIAGLLDEALDL--FERMPERDLPSWNTMITGLIQNGDLRRARKLFNE 274

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           MPK+NV+SWTTMI G  + G  +EA+ +F  M  T  A+PN+ T V+VL ACS+++ L  
Sbjct: 275 MPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGE 334

Query: 229 GKYVHSYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN--MLAYKDKISWSTVIS 285
           G+ VH  IS T Y    S  V +A+INMY KCG++G A ++F+  M + +D +SW+ +I+
Sbjct: 335 GQQVHQIISKTVY--QDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIA 392

Query: 286 GLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 345
             A +G G++A+  F  M  +   PDDVT++ L+SACSH GLV++GL  F  +     I+
Sbjct: 393 AYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSIL 452

Query: 346 PQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQD 405
            +  HYAC+VD+ GRAG L+EA  FI  +  +    VWGALL  C +H N ++  +  + 
Sbjct: 453 VREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKK 512

Query: 406 LVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           L+  +  + GT+ L+SN +A   +W +  ++R +++  GLKK+ GCSWIEV
Sbjct: 513 LLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWIEV 563



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 171/333 (51%), Gaps = 26/333 (7%)

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSS 120
           I  A ++F+ +  PDV++WTT+ISG  KCG  +EA  +F  +D K N  T  +++     
Sbjct: 83  IMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGY-- 140

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           + S+K+  A        +   N++  N ++D Y + G + S  YLF KMP+RNVVSW T+
Sbjct: 141 IRSNKISDA--EKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTV 198

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           +   A+ G  +EA  +F  M +            +V+S  + I+ L     +   +    
Sbjct: 199 MSMLAQCGRIEEARRLFDRMPER-----------DVISWTAMIAGL-----LDEALDLFE 242

Query: 241 DLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
            +   +L   N +I   ++ GD+  A ++FN +  K+ ISW+T+I+G    G   +AL++
Sbjct: 243 RMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKI 302

Query: 300 FSLMI-INAVFPDDVTFIALISACSHGGLVDQGLILFKAMS-TVYEIVPQMQHYACVVDM 357
           FS M+  N   P+  TF++++ ACS+   + +G  + + +S TVY+    +   + +++M
Sbjct: 303 FSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFV--VSALINM 360

Query: 358 YGRAGLLEEAEAFIRE-MPIEAEWSVWGALLNA 389
           Y + G L  A     + M  + +   W  ++ A
Sbjct: 361 YSKCGELGTARKMFDDGMTSQRDLVSWNGIIAA 393



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 109/237 (45%), Gaps = 30/237 (12%)

Query: 157 GSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNV 216
           G +     LF +M + +V++WTT+I GY + G  +EA  +F  ++  K          NV
Sbjct: 81  GRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKK----------NV 130

Query: 217 LSACSSISALSFGKYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYK 275
           ++  + +        +        ++   N+V  N +I+ Y + G +  A+ +F  +  +
Sbjct: 131 VTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPER 190

Query: 276 DKISWSTVISGLAMNGCGR--QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI 333
           + +SW+TV+S LA   CGR  +A +LF  M    V    +++ A+I+     GL+D+ L 
Sbjct: 191 NVVSWNTVMSMLAQ--CGRIEEARRLFDRMPERDV----ISWTAMIA-----GLLDEALD 239

Query: 334 LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 390
           LF+ M         +  +  ++    + G L  A     EMP +   S W  ++  C
Sbjct: 240 LFERMPE-----RDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVIS-WTTMITGC 290



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 5/116 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  TF   L ACS      +  ++H  + +  +    F+ ++L++ Y    ++ +A ++F
Sbjct: 315 NQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMF 374

Query: 69  NSVVFP--DVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 119
           +  +    D+VSW  II+  +  G+ KEAI+ F  +     KP+  T V +LSACS
Sbjct: 375 DDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACS 430


>gi|413918573|gb|AFW58505.1| hypothetical protein ZEAMMB73_474993 [Zea mays]
          Length = 773

 Score =  274 bits (700), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 143/433 (33%), Positives = 256/433 (59%), Gaps = 16/433 (3%)

Query: 33  HAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFH 92
           HA + +      + I N+L+  Y   + + SA ++F  +   D  SW  ++ G  K G  
Sbjct: 344 HAVITKRNFGDSVLIGNALISMYGKFEMVDSAGRVFRLLHQRDADSWNLMVVGYCKAGCD 403

Query: 93  KEAIDMFCGIDVKPN------ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
            + ++++  + ++        A++LVS +S+CS L   +LG++ H +S+++L + +  + 
Sbjct: 404 VKCLELYREMQLRDKYEFWCVADSLVSAISSCSRLAELRLGRSAHCYSIKHLLDEDSSVA 463

Query: 147 NAILDFYIRCGSLA-SCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
           N ++  Y RCG    +C    +   K +VV+W T+I  YA  G    A+S++ +M   + 
Sbjct: 464 NVLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSYAHLGHSNAAMSLYDQM-LIEG 522

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYIST---RYDLSVSNLVGNAVINMYVKCGDV 262
             PN  TL+ V+SAC+++ AL  G+ +HSY+      YD+S++     A+I+MY KCG +
Sbjct: 523 LTPNSTTLITVISACANLVALERGEKIHSYVKEMGWDYDVSINT----ALIDMYAKCGQL 578

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
           GIA ++F+ +   D ++W+ +ISG  M+G  +QAL+LF  M   ++ P+ VTF+A++SA 
Sbjct: 579 GIARRIFDSMLQHDVVAWNVMISGYGMHGEAKQALELFGKMEGGSIKPNGVTFLAILSAL 638

Query: 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
            H GL+++G  +F  M   Y + P ++HYAC+VD+ G++G L+EAE  +  MPIE +  +
Sbjct: 639 CHSGLLEEGRKVFTRMGK-YSLEPNLKHYACMVDLLGKSGHLQEAEDMVLAMPIEPDGGI 697

Query: 383 WGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442
           WG LL+AC++H N EM  RI +        + G + L+SN++ GA +W++  K+R+ ++ 
Sbjct: 698 WGTLLSACKLHDNFEMGLRIAKKAFASDPENEGYYILISNSYGGAKKWDEIEKLRETMKN 757

Query: 443 MGLKKKTGCSWIE 455
           +G++K  G S ++
Sbjct: 758 LGVQKGVGWSAVD 770



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 189/374 (50%), Gaps = 21/374 (5%)

Query: 32  IHAHVIEYGHL----HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS 87
           +HA+ + YG L      + + +SL++ Y    ++  A ++F  +   DVV+WT +ISG  
Sbjct: 133 VHAYCVRYGLLVGDGDSVAVASSLVYMYARCGNVRDAVKVFEEMPERDVVAWTAVISGCV 192

Query: 88  KCGFHKEAIDMFCGI-------DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNE 140
           + G   E +     +        V+PN+ T+ S L AC  L     G+ +H + ++    
Sbjct: 193 RNGESGEGLRYLVEMVRLAGDGSVRPNSRTMESGLEACGVLDELNSGRCLHGYVVKVGIG 252

Query: 141 NNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEM 200
           ++ ++ +A+   Y +C S      LF+++P+++VVSWT++IG Y  RG   EA+ +FQ+M
Sbjct: 253 DSPMVISALFSMYSKCYSTEDACALFLELPEKDVVSWTSLIGIYCRRGLITEAMELFQQM 312

Query: 201 EKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCG 260
            ++   +P+E  +  VLS   +   +  GK  H+ I+ R +   S L+GNA+I+MY K  
Sbjct: 313 MESG-LQPDEILVSCVLSGLGNNGNVHGGKTFHAVITKR-NFGDSVLIGNALISMYGKFE 370

Query: 261 DVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP----DDVTFI 316
            V  A +VF +L  +D  SW+ ++ G    GC  + L+L+  M +   +      D + +
Sbjct: 371 MVDSAGRVFRLLHQRDADSWNLMVVGYCKAGCDVKCLELYREMQLRDKYEFWCVAD-SLV 429

Query: 317 ALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV-VDMYGRAGLLEEAEAFIREMP 375
           + IS+CS   L +  L       ++  ++ +    A V + MYGR G  + A        
Sbjct: 430 SAISSCSR--LAELRLGRSAHCYSIKHLLDEDSSVANVLIGMYGRCGKFDHACKIFGLAK 487

Query: 376 IEAEWSVWGALLNA 389
           ++ +   W  L+++
Sbjct: 488 LKGDVVTWNTLISS 501



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/449 (24%), Positives = 209/449 (46%), Gaps = 25/449 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L+AC +         +H +V++ G      + ++L   Y        A  +F
Sbjct: 219 NSRTMESGLEACGVLDELNSGRCLHGYVVKVGIGDSPMVISALFSMYSKCYSTEDACALF 278

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
             +   DVVSWT++I    + G   EA+++F  +    ++P+   +  VLS   +  +  
Sbjct: 279 LELPEKDVVSWTSLIGIYCRRGLITEAMELFQQMMESGLQPDEILVSCVLSGLGNNGNVH 338

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK  HA   +    +++++ NA++  Y +   + S G +F  + +R+  SW  M+ GY 
Sbjct: 339 GGKTFHAVITKRNFGDSVLIGNALISMYGKFEMVDSAGRVFRLLHQRDADSWNLMVVGYC 398

Query: 186 ERGFCKEAVSVFQEMEKTKEAE--PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           + G   + + +++EM+   + E      +LV+ +S+CS ++ L  G+  H Y S ++ L 
Sbjct: 399 KAGCDVKCLELYREMQLRDKYEFWCVADSLVSAISSCSRLAELRLGRSAHCY-SIKHLLD 457

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DKISWSTVISGLAMNGCGRQALQLFSL 302
             + V N +I MY +CG    A ++F +   K D ++W+T+IS  A  G    A+ L+  
Sbjct: 458 EDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSYAHLGHSNAAMSLYDQ 517

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLIL---FKAMSTVYEIVPQMQHYACVVDMYG 359
           M+I  + P+  T I +ISAC++   +++G  +    K M   Y++         ++DMY 
Sbjct: 518 MLIEGLTPNSTTLITVISACANLVALERGEKIHSYVKEMGWDYDVSIN----TALIDMYA 573

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQDLVNKKGVSVG 415
           + G L  A      M ++ +   W  +++   +H       E+F ++    +   GV   
Sbjct: 574 KCGQLGIARRIFDSM-LQHDVVAWNVMISGYGMHGEAKQALELFGKMEGGSIKPNGV--- 629

Query: 416 TFALMSNTFAGADRWEDTNKIRDEIRRMG 444
           TF  + +    +   E+  K+     RMG
Sbjct: 630 TFLAILSALCHSGLLEEGRKV---FTRMG 655



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 5/166 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    + AC+     ++  +IH++V E G  +D+ I  +L+  Y     +  A +IF
Sbjct: 526 NSTTLITVISACANLVALERGEKIHSYVKEMGWDYDVSINTALIDMYAKCGQLGIARRIF 585

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSA-CSSLVSH 124
           +S++  DVV+W  +ISG    G  K+A+++F    G  +KPN  T +++LSA C S +  
Sbjct: 586 DSMLQHDVVAWNVMISGYGMHGEAKQALELFGKMEGGSIKPNGVTFLAILSALCHSGLLE 645

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP 170
           + G+ +     +   E N+     ++D   + G L     + + MP
Sbjct: 646 E-GRKVFTRMGKYSLEPNLKHYACMVDLLGKSGHLQEAEDMVLAMP 690



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 106/247 (42%), Gaps = 40/247 (16%)

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
           F   P+ +   W ++I  +        A+S  + M  +  A P+  T     SA + + A
Sbjct: 68  FSASPRPDAFLWNSLIRTHHCASDFVAALSAHRRMLASG-ARPSPFTAPLAASASAELGA 126

Query: 226 LSFGKYVHSYISTRYDLSVSN----LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWS 281
           L  G  VH+Y   RY L V +     V ++++ MY +CG+V  A++VF  +  +D ++W+
Sbjct: 127 LGVGAAVHAYC-VRYGLLVGDGDSVAVASSLVYMYARCGNVRDAVKVFEEMPERDVVAWT 185

Query: 282 TVISGLAMNGCGRQALQLFSLMII----NAVFPDDVTFIALISACS-----------HGG 326
            VISG   NG   + L+    M+      +V P+  T  + + AC            HG 
Sbjct: 186 AVISGCVRNGESGEGLRYLVEMVRLAGDGSVRPNSRTMESGLEACGVLDELNSGRCLHGY 245

Query: 327 LVDQGL--------ILFKAMSTVYEI---------VPQMQ--HYACVVDMYGRAGLLEEA 367
           +V  G+         LF   S  Y           +P+     +  ++ +Y R GL+ EA
Sbjct: 246 VVKVGIGDSPMVISALFSMYSKCYSTEDACALFLELPEKDVVSWTSLIGIYCRRGLITEA 305

Query: 368 EAFIREM 374
               ++M
Sbjct: 306 MELFQQM 312


>gi|302803540|ref|XP_002983523.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
 gi|300148766|gb|EFJ15424.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
          Length = 506

 Score =  274 bits (700), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 152/446 (34%), Positives = 245/446 (54%), Gaps = 11/446 (2%)

Query: 3   SCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIF 62
           S P   N  T+T  L ACS     ++  E+H  +++ G   D   +NSL++ Y     I 
Sbjct: 53  SPPVEPNAITYTTVLAACSAVEALEQGKEVHRQMVDAGFQFDAAAENSLVNMYAKCGSIT 112

Query: 63  SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACS 119
            A ++F+ +    VVSWT IIS   + G  +EA+D++  +    V+PN  T  SVLSACS
Sbjct: 113 EAREVFDGMKQRTVVSWTGIISAYVRKGHPREALDLYRKMGSEGVEPNGITFASVLSACS 172

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
           SL + + GKA+HA       + ++ + NA++  Y +CGS+ S   +F +M  RNVVSWT 
Sbjct: 173 SLGALEEGKAVHAQMKAAGYKPDLAVANALVSLYGKCGSVDSARKVFDRMKIRNVVSWTA 232

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-ST 238
           MI  YA     +EA+ +++ M+      PN  TL +VLSAC+S+     G+ VH  + ST
Sbjct: 233 MISSYAHHRHSEEAIQLYKAMD----VAPNAVTLASVLSACASLGNAEEGRAVHEKLAST 288

Query: 239 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQ 298
              L+   ++ NA++NMY KCGD   A ++F+ +A +D +SWST+I+    +G G +A++
Sbjct: 289 TTGLATDEVLQNALLNMYAKCGDGDAARKIFDAMAVRDTMSWSTLIAAYTQHGRGGEAVE 348

Query: 299 LFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMY 358
           +   M +  V      +  +++ACS  GL++     F  ++       +++ Y C+  + 
Sbjct: 349 MCRSMELEGVQASSFIYGTVLTACSQAGLLESARHYFGCLTRDCGAPAKLEDYVCMATVL 408

Query: 359 GRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFA 418
           GRAG L EAE  +  MP EAE+  W  LL AC+ H + E   R+ + L   + ++   + 
Sbjct: 409 GRAGRLAEAEELLAVMPFEAEFVAWMGLLAACKAHNDVERGARVAEVLFRLEPLNEAPYV 468

Query: 419 LMSNTFAGADRWEDTNKIRDEIRRMG 444
           L+SN +  A R E+  ++R   R+MG
Sbjct: 469 LLSNIYVAAGRQEEAARVR---RKMG 491



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 109/364 (29%), Positives = 197/364 (54%), Gaps = 21/364 (5%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI-----DVKPNANTLVSVLSAC 118
           + ++F+   + DV+ W ++I   S+ G  +EAI++F  +      V+PNA T  +VL+AC
Sbjct: 11  SREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNAITYTTVLAAC 70

Query: 119 SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWT 178
           S++ + + GK +H   +    + +   +N++++ Y +CGS+     +F  M +R VVSWT
Sbjct: 71  SAVEALEQGKEVHRQMVDAGFQFDAAAENSLVNMYAKCGSITEAREVFDGMKQRTVVSWT 130

Query: 179 TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST 238
            +I  Y  +G  +EA+ ++++M  ++  EPN  T  +VLSACSS+ AL  GK VH+ +  
Sbjct: 131 GIISAYVRKGHPREALDLYRKM-GSEGVEPNGITFASVLSACSSLGALEEGKAVHAQMKA 189

Query: 239 ---RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
              + DL+V+    NA++++Y KCG V  A +VF+ +  ++ +SW+ +IS  A +    +
Sbjct: 190 AGYKPDLAVA----NALVSLYGKCGSVDSARKVFDRMKIRNVVSWTAMISSYAHHRHSEE 245

Query: 296 ALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM-STVYEIVPQMQHYACV 354
           A+QL+  M    V P+ VT  +++SAC+  G  ++G  + + + ST   +         +
Sbjct: 246 AIQLYKAM---DVAPNAVTLASVLSACASLGNAEEGRAVHEKLASTTTGLATDEVLQNAL 302

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDRIRQDLVNKKGVS 413
           ++MY + G  + A      M +    S W  L+ A   H R  E  +  R   +  +GV 
Sbjct: 303 LNMYAKCGDGDAARKIFDAMAVRDTMS-WSTLIAAYTQHGRGGEAVEMCRS--MELEGVQ 359

Query: 414 VGTF 417
             +F
Sbjct: 360 ASSF 363



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 132/251 (52%), Gaps = 12/251 (4%)

Query: 152 FYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEM-EKTKEAEPNE 210
            + +CGSL     +F     ++V+ W +MI  Y++ G  +EA+ +F+ M   +   EPN 
Sbjct: 1   MFAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNA 60

Query: 211 ATLVNVLSACSSISALSFGKYVHSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
            T   VL+ACS++ AL  GK VH  +     ++D +      N+++NMY KCG +  A +
Sbjct: 61  ITYTTVLAACSAVEALEQGKEVHRQMVDAGFQFDAAAE----NSLVNMYAKCGSITEARE 116

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           VF+ +  +  +SW+ +IS     G  R+AL L+  M    V P+ +TF +++SACS  G 
Sbjct: 117 VFDGMKQRTVVSWTGIISAYVRKGHPREALDLYRKMGSEGVEPNGITFASVLSACSSLGA 176

Query: 328 VDQGLILFKAMSTV-YEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 386
           +++G  +   M    Y+  P +     +V +YG+ G ++ A      M I    S W A+
Sbjct: 177 LEEGKAVHAQMKAAGYK--PDLAVANALVSLYGKCGSVDSARKVFDRMKIRNVVS-WTAM 233

Query: 387 LNACRIHRNDE 397
           +++   HR+ E
Sbjct: 234 ISSYAHHRHSE 244



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 96/199 (48%), Gaps = 13/199 (6%)

Query: 255 MYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA--VFPDD 312
           M+ KCG +  + +VF+   +KD + W+++I   + +G  R+A++LF  M  ++  V P+ 
Sbjct: 1   MFAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNA 60

Query: 313 VTFIALISACSHGGLVDQGLILFKAM-STVYEIVPQMQHYACVVDMYGRAGLLEEAEAFI 371
           +T+  +++ACS    ++QG  + + M    ++     ++   +V+MY + G + EA    
Sbjct: 61  ITYTTVLAACSAVEALEQGKEVHRQMVDAGFQFDAAAEN--SLVNMYAKCGSITEAREVF 118

Query: 372 REMPIEAEWSVWGALLNA-CRIHRNDEMFDRIRQ---DLVNKKGVSVGTFALMSNTFAGA 427
             M      S W  +++A  R     E  D  R+   + V   G+   TFA + +  +  
Sbjct: 119 DGMKQRTVVS-WTGIISAYVRKGHPREALDLYRKMGSEGVEPNGI---TFASVLSACSSL 174

Query: 428 DRWEDTNKIRDEIRRMGLK 446
              E+   +  +++  G K
Sbjct: 175 GALEEGKAVHAQMKAAGYK 193


>gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
          Length = 822

 Score =  274 bits (700), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 154/486 (31%), Positives = 258/486 (53%), Gaps = 39/486 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +++T+   LKAC          E+H  +        + + N+L+  Y     +  A  +F
Sbjct: 274 DNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLF 333

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA---NT------------ 110
           + +   D VSW ++IS  +  G   EA ++F  +   D++ N    NT            
Sbjct: 334 DKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYK 393

Query: 111 --------------------LVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAIL 150
                               L+  L ACS +   KLGK IH+ ++R+       + N+++
Sbjct: 394 GALELLSQMRKXGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNSLI 453

Query: 151 DFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNE 210
             Y RC  L     LF  M  ++++SW ++I G       +EA  + +EM  +   EPN 
Sbjct: 454 TMYSRCKDLKHAYLLFQLMEAKSLISWNSIISGCCHMDRSEEASFLLREMLLSG-IEPNY 512

Query: 211 ATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN 270
            T+ +VL  C+ ++ L  GK  H Y++ R D     L+ NA+++MY + G V  A +VF+
Sbjct: 513 VTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFD 572

Query: 271 MLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQ 330
           ML  +DK++++++I+G  M G G+ AL+LF  M    + PD +T IA++SACSH GLV Q
Sbjct: 573 MLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQ 632

Query: 331 GLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 390
           G +LF+ M ++Y + P ++H+AC+ D++GRAGLL +A+  IR MP +   ++W  L+ AC
Sbjct: 633 GQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGAC 692

Query: 391 RIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTG 450
           RIHRN E+ +   + L+  K  + G + L++N +A A  W    K+R  +R +G++K  G
Sbjct: 693 RIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKLAKVRXFMRDLGVRKAPG 752

Query: 451 CSWIEV 456
           C+W++V
Sbjct: 753 CAWVDV 758



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/395 (24%), Positives = 169/395 (42%), Gaps = 38/395 (9%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +  +  L +C+      +  ++H H+I  G      +   L+ FY     +  AH I  +
Sbjct: 175 HPISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITEN 234

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLG 127
                   W  +IS   + GF ++A+  +  +    ++P+  T  SVL AC   +    G
Sbjct: 235 SNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFG 294

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           K +H     +  + ++I+ NA++  Y +CG +     LF K+P+R+ VSW +MI  YA  
Sbjct: 295 KEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASM 354

Query: 188 GFCKEAVSVFQEM----------------------------------EKTKEAEPNEATL 213
           G   EA  +F  M                                   +   +  +   L
Sbjct: 355 GMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKXGSHLDSVAL 414

Query: 214 VNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 273
           +  L ACS I     GK +HS+ + R      + V N++I MY +C D+  A  +F ++ 
Sbjct: 415 IIGLGACSHIGDAKLGKEIHSF-AIRSCFGEVDTVKNSLITMYSRCKDLKHAYLLFQLME 473

Query: 274 YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI 333
            K  ISW+++ISG        +A  L   M+++ + P+ VT  +++  C+    +  G  
Sbjct: 474 AKSLISWNSIISGCCHMDRSEEASFLLREMLLSGIEPNYVTIASVLPLCARVANLQHGKE 533

Query: 334 LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
               M+   +    +  +  +VDMY R+G + EA 
Sbjct: 534 FHCYMTRREDFKDHLLLWNALVDMYARSGKVLEAR 568


>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  274 bits (700), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 150/453 (33%), Positives = 263/453 (58%), Gaps = 11/453 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           TF  AL A S     +   ++HA++++   +  + I N+++  Y     I ++ ++F+++
Sbjct: 324 TFLSALTAISQLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNM 383

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKP---NANTLVSVLSACSSLVSHKLGK 128
           +  DVV+W T++S   + G   E + +   +  +    ++ TL ++LS  S+L S ++GK
Sbjct: 384 LERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGK 443

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK--RNVVSWTTMIGGYAE 186
             HA+ +R+  +    +D+ ++D Y + G + +   LF K     R+  +W  MI GY +
Sbjct: 444 QAHAYLIRHGIQFEG-MDSYLIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQ 502

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
            G  +E  +VF++M + +   PN  TL ++L AC+ +  +  GK +H + + R  L+ + 
Sbjct: 503 NGLSEEGFAVFRKMIE-QNVRPNAVTLASILPACNPMGTIGLGKQIHGF-AIRCFLNRNV 560

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            VG A+++MY K G +  A  VF     K+ ++++T+IS    +G G +AL LF  M+ +
Sbjct: 561 FVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGERALSLFHAMLGS 620

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
            + PD VTF+A++SACS+ GLVD+GL +F++M   Y+I P  +HY CV DM GR G + E
Sbjct: 621 GIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSAEHYCCVADMLGRVGRVVE 680

Query: 367 AEAFIREMPIEAE-WSVWGALLNACRIHRNDEMFDRIRQDLVN-KKGVSV-GTFALMSNT 423
           A  F++ +  E   + +WG+LL ACRIH   E+   +   L+  +KG S+ G   L+SN 
Sbjct: 681 AYEFVKGLGEEGNTFGIWGSLLGACRIHGEFELGKVVANKLLEMEKGSSLTGYHVLLSNI 740

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           +A    W++ +++R E+R+ GL K+ GCSW+EV
Sbjct: 741 YAAEGNWDNVDRVRKEMRQKGLMKEAGCSWVEV 773



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/419 (25%), Positives = 198/419 (47%), Gaps = 47/419 (11%)

Query: 1   MLSCPS-SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVT-- 57
           M + PS  ++ YTF+  LKAC+ A   +    +H HV+         + NSLL+ Y T  
Sbjct: 94  MRASPSPKFDSYTFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCL 153

Query: 58  --VKDIFSAH---------QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGID 103
             V  + +A+         ++F+++   +VV+W T+IS   K     EA  MF     + 
Sbjct: 154 TEVPYLGTAYDFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMG 213

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR---NLNENNIILDNAILDFYIRCGSLA 160
           ++P   + V+V  A   +  +     ++   ++   +  ++  ++ +AI   Y   G + 
Sbjct: 214 IRPTPVSFVNVFPAVWRMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIF-MYAELGCVD 272

Query: 161 SCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
               +F    +RN   W TMIGGY +     EA+ +F ++ ++++   ++ T ++ L+A 
Sbjct: 273 FAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAI 332

Query: 221 SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
           S +  L  G+ +H+YI  +    +  ++ NA+I MY +CG +G + +VF+ +  +D ++W
Sbjct: 333 SQLQWLELGRQLHAYI-LKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTW 391

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS-----------HGGLVD 329
           +T++S    NG   + L L   M       D VT  AL+S  S           H  L+ 
Sbjct: 392 NTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIR 451

Query: 330 QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEA-FIREMPIEAEWSVWGALL 387
            G I F+ M +             ++DMY ++GL+  A+  F +    + + + W A++
Sbjct: 452 HG-IQFEGMDSY------------LIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMI 497



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 158/350 (45%), Gaps = 32/350 (9%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKP----NANTLVSVLSACS 119
           A  +F+S+  P  V W TII G        +A+  +  +   P    ++ T  S L AC+
Sbjct: 56  ALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKACA 115

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYL-------------- 165
              S KLGKA+H H LR+   ++ I+ N++L+ Y  C  L    YL              
Sbjct: 116 QARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTC--LTEVPYLGTAYDFNNCDLVRR 173

Query: 166 -FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224
            F  M KRNVV+W TMI  Y +     EA  +F+ M +     P   + VNV  A   +S
Sbjct: 174 VFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMG-IRPTPVSFVNVFPAVWRMS 232

Query: 225 ALSFGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTV 283
                  ++   +    D      V ++ I MY + G V  A ++F+    ++   W+T+
Sbjct: 233 DYDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTM 292

Query: 284 ISGLAMNGCGRQALQLFSLMIINAVFP-DDVTFIALISACSHGGLVDQGLILFKAM---S 339
           I G   N C  +A+ LF  ++ +  F  DDVTF++ ++A S    ++ G  L   +   S
Sbjct: 293 IGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILKSS 352

Query: 340 TVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           T+ ++V        ++ MY R G +  +      M +E +   W  +++A
Sbjct: 353 TILQVVI----LNAIIVMYSRCGSIGTSFKVFSNM-LERDVVTWNTMVSA 397



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 107/252 (42%), Gaps = 21/252 (8%)

Query: 164 YLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI 223
           +LF  +P+   V W T+I G+       +A+  +  M  +   + +  T  + L AC+  
Sbjct: 58  HLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKACAQA 117

Query: 224 SALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKC-------------GDVGIAIQVFN 270
            +L  GK +H ++  R     S +V N+++NMY  C              +  +  +VF+
Sbjct: 118 RSLKLGKALHCHV-LRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFD 176

Query: 271 MLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQ 330
            +  ++ ++W+T+IS         +A ++F  M+   + P  V+F+ +  A       D 
Sbjct: 177 TMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMSDYDN 236

Query: 331 GLILFKAMSTV-YEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL-- 387
             +L+  +  +  + V      +  + MY   G ++ A   I +  +E    VW  ++  
Sbjct: 237 ANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFARE-IFDCCLERNTEVWNTMIGG 295

Query: 388 ---NACRIHRND 396
              N C I   D
Sbjct: 296 YVQNNCPIEAID 307


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  273 bits (699), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 146/451 (32%), Positives = 256/451 (56%), Gaps = 6/451 (1%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           +   L++C +    +   ++HA + + G   +  +   L++ Y     + +AH +F+ + 
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKA 129
             ++  W  +I G +  G ++ AI ++  +    + P+  T   VL ACS+L + + GK 
Sbjct: 64  KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKK 123

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           IH   +R+  E+++ +  A++D Y +CG + S   +F K+ +R+VV W +M+  Y++ G 
Sbjct: 124 IHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQ 183

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
             E++++ + M      +P E T V  ++A +    L  GK +H Y S R+    ++ V 
Sbjct: 184 PDESLALCRVM-AFNGLKPTEGTFVISIAASADNGLLPQGKELHGY-SWRHGFESNDKVK 241

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
            A+++MY K G V +A  +F +L  K  +SW+ +I+G AM+G   +AL LF  M    V 
Sbjct: 242 TALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMK-GKVL 300

Query: 310 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEA 369
           PD +TF+ +++ACSHGGL+++G + F++M + + I P +QHY C++D+ G  G LEEA  
Sbjct: 301 PDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYK 360

Query: 370 FIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADR 429
            I EM +E +  VWGALL++C+IH N EM +   + LV  +    G + ++SN +A A +
Sbjct: 361 LIMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAGK 420

Query: 430 WEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           W+   ++RD +   GLKK   CSWIEV   +
Sbjct: 421 WDGVARLRDLMMNKGLKKSIACSWIEVGNKV 451



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 167/365 (45%), Gaps = 57/365 (15%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +TF   LKACS     ++  +IH  VI  G   D+F+  +L+  Y     + SA Q+F
Sbjct: 101 DKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVF 160

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDM-----FCGIDVKPNANTLVSVLSACSSLVS 123
           + +   DVV W ++++  S+ G   E++ +     F G+  KP   T V  ++A +    
Sbjct: 161 DKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGL--KPTEGTFVISIAASADNGL 218

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
              GK +H +S R+  E+N  +  A++D Y + GS+     LF  + ++ VVSW  MI G
Sbjct: 219 LPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITG 278

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGK-YVHSYISTRYDL 242
           YA  G   EA+ +F+EM+   +  P+  T V VL+ACS    L+ GK +  S IS     
Sbjct: 279 YAMHGHANEALDLFKEMK--GKVLPDHITFVGVLAACSHGGLLNEGKMHFRSMISD---- 332

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAM----NGCGRQALQ 298
                                     FN+        W TV     M      CGR   +
Sbjct: 333 --------------------------FNI--------WPTVQHYTCMIDLLGHCGRLE-E 357

Query: 299 LFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP-QMQHYACVVDM 357
            + L++   V PD   + AL+ +C   G V+ G +   A+  + E+ P    +Y  + +M
Sbjct: 358 AYKLIMEMRVEPDAGVWGALLHSCKIHGNVEMGEL---ALEKLVELEPDDGGNYVILSNM 414

Query: 358 YGRAG 362
           Y +AG
Sbjct: 415 YAQAG 419


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 152/411 (36%), Positives = 238/411 (57%), Gaps = 10/411 (2%)

Query: 49  NSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNA 108
           N+++        I  A ++F+ +   DV+SWT +I+GLSK G   EA  +F   D  P  
Sbjct: 181 NTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLLF---DRMPER 237

Query: 109 NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168
           N +           + +L +A+       + E ++   N ++   I+ G L     LF +
Sbjct: 238 NVVSWNAMITGYAQNLRLDEALDL--FERMPERDLPSWNTMITGLIQNGDLRRARKLFNE 295

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           MPK+NV+SWTTMI G  + G  +EA+ +F  M  T  A+PN+ T V+VL ACS+++ L  
Sbjct: 296 MPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGE 355

Query: 229 GKYVHSYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN--MLAYKDKISWSTVIS 285
           G+ VH  IS T Y    S  V +A+INMY KCG++G A ++F+  M + +D +SW+ +I+
Sbjct: 356 GQQVHQIISKTVY--QDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIA 413

Query: 286 GLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 345
             A +G G++A+  F  M  +   PDDVT++ L+SACSH GLV++GL  F  +     I+
Sbjct: 414 AYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSIL 473

Query: 346 PQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQD 405
            +  HYAC+VD+ GRAG L+EA  FI  +  +    VWGALL  C +H N ++  +  + 
Sbjct: 474 VREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKK 533

Query: 406 LVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           L+  +  + GT+ L+SN +A   +W +  ++R +++  GLKK+ GCSWIEV
Sbjct: 534 LLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWIEV 584



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 178/353 (50%), Gaps = 30/353 (8%)

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSS 120
           I  A ++F+ +  PDV++WTT+ISG  KCG  +EA  +F  +D K N  T  +++     
Sbjct: 68  IMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGY-- 125

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           + S+K+  A        +   N++  N ++D Y + G + S  YLF KMP+RNVVSW T+
Sbjct: 126 IRSNKISDA--EKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTV 183

Query: 181 IGGYAERGFCKEAVSVFQEMEK-------------TKEAEPNEATLV-------NVLSAC 220
           +   A+ G  +EA  +F  M +             +K    +EA L+       NV+S  
Sbjct: 184 MSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNVVSWN 243

Query: 221 SSISALSFGKYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDKIS 279
           + I+  +    +   +     +   +L   N +I   ++ GD+  A ++FN +  K+ IS
Sbjct: 244 AMITGYAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVIS 303

Query: 280 WSTVISGLAMNGCGRQALQLFSLMI-INAVFPDDVTFIALISACSHGGLVDQGLILFKAM 338
           W+T+I+G    G   +AL++FS M+  N   P+  TF++++ ACS+   + +G  + + +
Sbjct: 304 WTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQII 363

Query: 339 S-TVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIRE-MPIEAEWSVWGALLNA 389
           S TVY+    +   + +++MY + G L  A     + M  + +   W  ++ A
Sbjct: 364 SKTVYQDSTFV--VSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAA 414



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 115/256 (44%), Gaps = 32/256 (12%)

Query: 157 GSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK------------ 204
           G +     LF +M + +V++WTT+I GY + G  +EA  +F  ++  K            
Sbjct: 66  GRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGY 125

Query: 205 -------EAEP--NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG-NAVIN 254
                  +AE   NE    NV+S  + I   +    + S +     +   N+V  N V++
Sbjct: 126 IRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMS 185

Query: 255 MYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVT 314
           M  +CG +  A ++F+ +  +D ISW+ +I+GL+ NG   +A  LF  M    V    V+
Sbjct: 186 MLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNV----VS 241

Query: 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
           + A+I+  +    +D+ L LF+ M         +  +  ++    + G L  A     EM
Sbjct: 242 WNAMITGYAQNLRLDEALDLFERMPE-----RDLPSWNTMITGLIQNGDLRRARKLFNEM 296

Query: 375 PIEAEWSVWGALLNAC 390
           P +   S W  ++  C
Sbjct: 297 PKKNVIS-WTTMITGC 311



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 5/116 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  TF   L ACS      +  ++H  + +  +    F+ ++L++ Y    ++ +A ++F
Sbjct: 336 NQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMF 395

Query: 69  NSVVFP--DVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 119
           +  +    D+VSW  II+  +  G+ KEAI+ F  +     KP+  T V +LSACS
Sbjct: 396 DDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACS 451


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 157/432 (36%), Positives = 237/432 (54%), Gaps = 36/432 (8%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 120
           A  IF  +   +V  W T +   ++     +AI +F  +   D+ P+  T   VL ACS 
Sbjct: 66  AKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSR 125

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSL--------------------- 159
           L+  + GK +H +  +   ++N+ L N I+  Y  CG +                     
Sbjct: 126 LLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIM 185

Query: 160 ---------ASCGY-LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN 209
                    A   Y LF +MP+RNV SWT+MIGGYA+ G  KEA+ +F EME      PN
Sbjct: 186 IARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLL-PN 244

Query: 210 EATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF 269
           E T+V VL AC+ +  L  G+ +H + S R     +  V N +I+MYVKCG +  A ++F
Sbjct: 245 EVTVVAVLVACADMGNLVLGRRIHDF-SNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIF 303

Query: 270 NMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVD 329
           + +  +  +SWS +I+GLA +G    AL LF+ MI   V P+ VTFI ++ ACSH G+V+
Sbjct: 304 DNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVE 363

Query: 330 QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           +G   F +M+  Y IVP+++HY C+VD++ RAGLL+EA  FI  MPI     VWGALL  
Sbjct: 364 KGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGG 423

Query: 390 CRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKT 449
           C++H+N ++ +   + L     ++ G + ++SN +A A RWED  ++R  +R  G+KK  
Sbjct: 424 CKVHKNIKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTP 483

Query: 450 GCSWIEVNPSIF 461
           G S I V   ++
Sbjct: 484 GWSSIMVEGVVY 495



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 158/315 (50%), Gaps = 36/315 (11%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S +HYT +  LKACS     +    +H +V + G   ++F+QN ++H Y    +I  A +
Sbjct: 110 SPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARK 169

Query: 67  IFNSVVFPDVV-------------------------------SWTTIISGLSKCGFHKEA 95
           +F+ +   DV+                               SWT++I G ++CG  KEA
Sbjct: 170 VFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEA 229

Query: 96  IDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDF 152
           ID+F  ++   + PN  T+V+VL AC+ + +  LG+ IH  S R+  E NI + N ++D 
Sbjct: 230 IDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDM 289

Query: 153 YIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEAT 212
           Y++CG L     +F  M +R VVSW+ MI G A  G  ++A+++F +M  T   +PN  T
Sbjct: 290 YVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTG-VKPNAVT 348

Query: 213 LVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNM 271
            + +L ACS +  +  G+   + ++  Y +         +++++ + G +  A + + NM
Sbjct: 349 FIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNM 408

Query: 272 LAYKDKISWSTVISG 286
               + + W  ++ G
Sbjct: 409 PIAPNGVVWGALLGG 423


>gi|218189919|gb|EEC72346.1| hypothetical protein OsI_05579 [Oryza sativa Indica Group]
          Length = 545

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 153/483 (31%), Positives = 257/483 (53%), Gaps = 44/483 (9%)

Query: 10  HYTFTQALKACSLAHPHQKALEIHAHVIEYG-HLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           H+  TQ    C      Q+   IHA  + +G H +   I   +   Y        A ++F
Sbjct: 24  HHLLTQ----CKTIRELQR---IHAQALTHGLHPNQQSISCKIFRSYAEFGRPADAGRLF 76

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHK 125
           + +  PD++S+T+++S   K   H +AI +F        +P+    V  LSA   L   +
Sbjct: 77  DEIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQR 136

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC--------------------GYL 165
           +G  +H    R   ++ +++ NA++D Y RCG                         GY+
Sbjct: 137 IGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYM 196

Query: 166 -----------FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
                      F +MP ++ VSWT +I G+ +     +A+ +F +M   +   PN  T+V
Sbjct: 197 KCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKM-LLEGHRPNHITIV 255

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
            VLSAC+ I AL  G+ +H Y  ++ + + + +V NA+++MY K G +  A  VF  +  
Sbjct: 256 GVLSACADIGALDLGRAIHGY-GSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEEVQM 314

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           KD  +W+T+IS   + G GR+A++LF  M+ + + P+ VTF++++SACSH GL+ +G  L
Sbjct: 315 KDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVSVLSACSHAGLIQEGREL 374

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F  M  VY I P+++HY C+VD+ GR GLLEEAEA I  M +E +  +W +LL+AC  H 
Sbjct: 375 FDKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRSLLSACLAHG 434

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           ND + +   ++++ ++    G + L+ N +A ++RW++   +R ++    + KK GCSWI
Sbjct: 435 NDRLAEIAGKEIIKREPGDDGVYVLLWNMYALSNRWKEALDMRKQMLSRKIYKKPGCSWI 494

Query: 455 EVN 457
           EV+
Sbjct: 495 EVD 497



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 3/114 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           NH T    L AC+          IH +  +     +I + N+L+  Y     I SA  +F
Sbjct: 250 NHITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSVF 309

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 119
             V   D  +WTT+IS  +  G  ++A+++F  +    + PN+ T VSVLSACS
Sbjct: 310 EEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVSVLSACS 363


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 139/434 (32%), Positives = 246/434 (56%), Gaps = 5/434 (1%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           E+H + ++   ++D  + N+ +  Y     +  A ++F+ +    + SW  +I G ++  
Sbjct: 400 ELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSS 459

Query: 91  FHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
             + ++D    +    + P+  T+ S+LSACS L S +LGK +H   +RN  E ++ +  
Sbjct: 460 DPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYL 519

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           ++L  YI CG L +   LF  M   ++VSW T+I G+ + GF + A+ +F++M      +
Sbjct: 520 SVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQM-VLYGIQ 578

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
           P   +++ V  ACS + +L  G+  H+Y + ++ L  +  +  ++I+MY K G +  + +
Sbjct: 579 PCGISMMTVFGACSLLPSLRLGREAHAY-ALKHLLEDNAFIACSIIDMYAKNGAITQSSK 637

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           VFN L  K   SW+ +I G  M+G  ++A++LF  M      PDD+TF+ +++AC+H GL
Sbjct: 638 VFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGL 697

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           + +GL     M + + + P ++HYACV+DM GRAG L+ A     EM  E +  +W +LL
Sbjct: 698 LHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSLL 757

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
           + CRIH+N EM +++   L   +      + L+SN +AG  +W+D  ++R  ++ M L+K
Sbjct: 758 SWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLLSNLYAGLGKWDDVRQVRQRMKEMSLRK 817

Query: 448 KTGCSWIEVNPSIF 461
             GCSWIE+N  +F
Sbjct: 818 DAGCSWIELNGKVF 831



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 162/316 (51%), Gaps = 11/316 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +++TF   +KAC+        L +H  V++ G + D+F+ N+L+ FY T   +  A ++F
Sbjct: 186 DNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLF 245

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
           + +   ++VSW ++I   S  G     +         P+  T+V+VL  C+      +GK
Sbjct: 246 DIMPERNLVSWNSMIRVFSDNGDDGAFM---------PDVATVVTVLPVCAREREIGVGK 296

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H  +++   +  ++++NA++D Y + G +     +F     +NVVSW TM+GG++  G
Sbjct: 297 GVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEG 356

Query: 189 FCKEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
                  + ++M   +++ + +E T++N +  C   S L   K +H Y S + +     L
Sbjct: 357 DIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVLPSLKELHCY-SLKQEFVYDEL 415

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           + NA +  Y KCG +  A +VF+ +  K   SW+ +I G A +   R +L     M  + 
Sbjct: 416 LANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSG 475

Query: 308 VFPDDVTFIALISACS 323
           + PD+ T  +L+SACS
Sbjct: 476 LLPDNFTVCSLLSACS 491



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 151/281 (53%), Gaps = 5/281 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +++T    L ACS     +   E+H  +I      D+F+  S+L  Y+   ++ +   +F
Sbjct: 479 DNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLF 538

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           +++    +VSW T+I+G  + GF + A+ +F  +    ++P   ++++V  ACS L S +
Sbjct: 539 DAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLR 598

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG+  HA++L++L E+N  +  +I+D Y + G++     +F  + +++  SW  MI GY 
Sbjct: 599 LGREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYG 658

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G  KEA+ +F+EM++T    P++ T + VL+AC+    L  G      + + + L  +
Sbjct: 659 MHGRAKEAIKLFEEMQRTGR-NPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPN 717

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS-WSTVIS 285
                 VI+M  + G +  A++V   ++ +  +  W++++S
Sbjct: 718 LKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSLLS 758



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 124/261 (47%), Gaps = 20/261 (7%)

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK----PNANTLVSVLSACSSLVS 123
           F+++   ++  W  +IS  S+   + E ++MF  +  K    P+  T   V+ AC+ +  
Sbjct: 143 FDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISD 202

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
             +G A+H   ++     ++ + NA++ FY   G ++    LF  MP+RN+VSW +MI  
Sbjct: 203 VGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMI-- 260

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
                       VF +        P+ AT+V VL  C+    +  GK VH + + +  L 
Sbjct: 261 -----------RVFSDNGDDGAFMPDVATVVTVLPVCAREREIGVGKGVHGW-AVKLSLD 308

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
              +V NA+++MY K G +  +  +F +   K+ +SW+T++ G +  G       L   M
Sbjct: 309 KELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQM 368

Query: 304 IINA--VFPDDVTFIALISAC 322
           +  +  V  D+VT +  +  C
Sbjct: 369 LAGSEDVKADEVTILNAVPVC 389



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 112/261 (42%), Gaps = 39/261 (14%)

Query: 114 VLSACSSLVSHKLGKAIH---AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP 170
           +L A       ++G+ IH   + S R  +++  +L   I+  Y  CGS       F  + 
Sbjct: 90  LLQASGKRKDIEMGRKIHHLVSGSTRLRSDD--VLCTRIITMYAMCGSPDDSRSAFDALR 147

Query: 171 KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGK 230
            +N+  W  +I  Y+      E + +F +M       P+  T   V+ AC+ IS +  G 
Sbjct: 148 SKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGL 207

Query: 231 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMN 290
            VH  +  +  L     VGNA+++ Y   G V  A+++F+++  ++ +SW+++I   + N
Sbjct: 208 AVHGLV-VKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDN 266

Query: 291 GCGRQALQLFSLMIINAVFPDDVTFIALISACS-----------HGGLV----DQGLILF 335
           G               A  PD  T + ++  C+           HG  V    D+ L++ 
Sbjct: 267 GDD------------GAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVN 314

Query: 336 KAMSTVYEIVPQMQHYACVVD 356
            A+  +Y        + C++D
Sbjct: 315 NALMDMY------SKWGCIID 329


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 158/469 (33%), Positives = 268/469 (57%), Gaps = 11/469 (2%)

Query: 1   MLSCPSSY-NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK 59
           ++S  S+Y N Y FT  L  C+ +   ++  + H ++++ G L   +++N+L+H Y    
Sbjct: 118 LVSLDSAYPNEYIFTIVLSCCADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCF 177

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG-ID--VKPNANTLVSVLS 116
            + SA QI ++V   DV S+ +I+S L + G   EA  +    +D  V  ++ T VSVL 
Sbjct: 178 HVDSAMQILDTVPGDDVFSYNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLG 237

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
            C+ +   +LG  IHA  L+     ++ + + ++D Y +CG + +    F  +  RNVV+
Sbjct: 238 LCAQIRDLQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVA 297

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           WT ++  Y + G  +E +++F +ME  ++  PNE T   +L+AC+S+ AL++G  +H  I
Sbjct: 298 WTAVLTAYLQNGHFEETLNLFTKME-LEDTRPNEFTFAVLLNACASLVALAYGDLLHGRI 356

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
                     +VGNA+INMY K G++  +  VF+ +  +D I+W+ +I G + +G G+QA
Sbjct: 357 VMS-GFKNHLIVGNALINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQA 415

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
           L +F  M+     P+ VTFI ++SAC H  LV +G   F  +   +++ P ++HY C+V 
Sbjct: 416 LLVFQDMMSAGECPNYVTFIGVLSACVHLALVQEGFYYFDQIMKKFDVEPGLEHYTCMVA 475

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSV--WGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414
           + GRAGLL+EAE F++    + +W V  W  LLNAC IHRN  +  +I + ++      V
Sbjct: 476 LLGRAGLLDEAENFMKT-TTQVKWDVVAWRTLLNACHIHRNYNLGKQITETVIQMDPHDV 534

Query: 415 GTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV--NPSIF 461
           GT+ L+SN  A A +W+   KIR  ++   +KK+ G SW+++  N  +F
Sbjct: 535 GTYTLLSNMHAKARKWDGVVKIRKLMKERNIKKEPGASWLDIRNNTHVF 583



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 149/288 (51%), Gaps = 18/288 (6%)

Query: 111 LVSVLSACSSLVSHKLGKAIHAH-SLRNL--NENNIILDNAILDFYIRCGSLASCGYLFV 167
           +V++L   ++  S + GK IHA   +RN    +++I   N++++ Y +CG       LF 
Sbjct: 26  VVNLLKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKCARKLFD 85

Query: 168 KMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 227
           +M +RNVVSW+ ++ GY  +G   E + +F+ +     A PNE     VLS C+    + 
Sbjct: 86  RMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSGRVK 145

Query: 228 FGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGL 287
            GK  H Y+  +  L +   V NA+I+MY +C  V  A+Q+ + +   D  S+++++S L
Sbjct: 146 EGKQCHGYL-LKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSAL 204

Query: 288 AMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM---STVYEI 344
             +GC  +A Q+   M+   V  D VT+++++  C+    +  GL +   +     V+++
Sbjct: 205 VESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDV 264

Query: 345 VPQMQHYACVVDMYGRAG-LLEEAEAF--IREMPIEAEWSVWGALLNA 389
                  + ++D YG+ G +L   + F  +R+  + A    W A+L A
Sbjct: 265 FVS----STLIDTYGKCGEVLNARKQFDGLRDRNVVA----WTAVLTA 304



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 136/284 (47%), Gaps = 6/284 (2%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI- 102
           DI   NSL++ Y        A ++F+ ++  +VVSW+ ++ G    G   E + +F  + 
Sbjct: 60  DITQINSLINLYSKCGQSKCARKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLV 119

Query: 103 ---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSL 159
                 PN      VLS C+     K GK  H + L++    +  + NA++  Y RC  +
Sbjct: 120 SLDSAYPNEYIFTIVLSCCADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHV 179

Query: 160 ASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
            S   +   +P  +V S+ +++    E G   EA  V + M   +    +  T V+VL  
Sbjct: 180 DSAMQILDTVPGDDVFSYNSILSALVESGCRGEAAQVLKRMVD-ECVIWDSVTYVSVLGL 238

Query: 220 CSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS 279
           C+ I  L  G  +H+ +  +  L     V + +I+ Y KCG+V  A + F+ L  ++ ++
Sbjct: 239 CAQIRDLQLGLQIHAQL-LKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVA 297

Query: 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
           W+ V++    NG   + L LF+ M +    P++ TF  L++AC+
Sbjct: 298 WTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACA 341


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 159/484 (32%), Positives = 261/484 (53%), Gaps = 25/484 (5%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLH-DIFIQNSLLHFYVTVK 59
           M+S     +  TF  AL ACS         E+HA V++   L  + F+ ++L+  Y   +
Sbjct: 273 MVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNE 332

Query: 60  DIFSAHQIFNSVVFP--DVVSWTTIISGLSKCGFHKEAIDMFCGIDVK----PNANTLVS 113
            + SA ++F+ V  P   +  W  +I G ++ G  +EA+++F  ++ +    P+  T+  
Sbjct: 333 KVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSG 392

Query: 114 VLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
           VL AC+        +A+H + ++     N  + NA++D Y R G +     +F  +  R+
Sbjct: 393 VLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRD 452

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEME----------KTKEAE-----PNEATLVNVLS 218
           VVSW T+I G   +G   EA  +  EM+           T+E E     PN  TL+ +L 
Sbjct: 453 VVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLP 512

Query: 219 ACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI 278
            C++++A + GK +H Y + R+ L     VG+A+++MY KCG +  +  VF+ L  ++ I
Sbjct: 513 GCAALAAPARGKEIHGY-AVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNVI 571

Query: 279 SWSTVISGLAMNGCGRQALQLFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKA 337
           +W+ +I    M+G G +A+ LF  M       P++VTFIA ++ACSH GLVD+GL LF  
Sbjct: 572 TWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHG 631

Query: 338 MSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALLNACRIHRND 396
           M   + + P    +ACVVD+ GRAG L+EA + I  M P E + S W +LL ACR+HRN 
Sbjct: 632 MERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLLGACRLHRNV 691

Query: 397 EMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           E+ +   + L   +      + L+ N ++ A  W+ +  +R  +RR G+ K+ GCSWIE+
Sbjct: 692 ELGEVAAERLFELEPGEASHYVLLCNIYSAAGMWDKSVAVRVRMRRQGVAKEPGCSWIEL 751

Query: 457 NPSI 460
           + +I
Sbjct: 752 DGAI 755



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 115/418 (27%), Positives = 186/418 (44%), Gaps = 52/418 (12%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLH--DIFIQNSLLHFYVTVKDIFSAHQ 66
           +H+    A+K+ +     + A  +HA  +    LH     + N+LL  Y    D+ +A  
Sbjct: 62  DHFALPPAIKSAAALRDARAARSLHAAALRRALLHRPSPAVGNALLTAYARCGDLDAALA 121

Query: 67  IFNSVV--FPDVVSWTTIISGLSKCGFHK-----EAI-DMFCGIDVKPNANTLVSVLSAC 118
           +F +      D VS+ ++IS L  C F +     +A+ DM        ++ TLVSVL AC
Sbjct: 122 LFAATATELRDAVSYNSLISAL--CLFRQWERALDALRDMLAEGRHDVSSFTLVSVLLAC 179

Query: 119 SSLVS---HKLGKAIHAHSLRN--LNENNIILD-NAILDFYIRCGSLASCGYLFVKMPKR 172
           S L      +LG+  HA +L+   L+E       NA+L  Y R G +     LF      
Sbjct: 180 SHLPGDDGRRLGREAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAA 239

Query: 173 ------NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 226
                 +VV+W TMI    + G C EAV V  +M       P+  T  + L ACS +  L
Sbjct: 240 FSPGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVSLG-VRPDGVTFASALPACSRLEML 298

Query: 227 SFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI--SWSTVI 284
           + G+ +H+ +    DL+ ++ V +A+++MY     V  A +VF+M+    +    W+ +I
Sbjct: 299 ALGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMI 358

Query: 285 SGLAMNGCGRQALQLFSLMIINA-VFPDDVTFIALISACS-----------HGGLVDQGL 332
            G A  G   +AL+LFS M   A   P + T   ++ AC+           HG +V +G+
Sbjct: 359 CGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGM 418

Query: 333 ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 390
              + +               ++DMY R G ++ A   I  M    +   W  L+  C
Sbjct: 419 AGNRFVQNA------------LMDMYARLGEMDVARR-IFAMIDPRDVVSWNTLITGC 463


>gi|297828580|ref|XP_002882172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297328012|gb|EFH58431.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 638

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 140/456 (30%), Positives = 250/456 (54%), Gaps = 5/456 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +  T    + AC+     +    +H  V+  G  +D+ + NSLL+ Y   +    A  +F
Sbjct: 143 DRVTLITLVSACTKLSNSRLGRCVHGFVMRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLF 202

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
             +   DV+SW+T+I+   + G   EA+ +F  +     +PN  T++ VL AC++    +
Sbjct: 203 KMMAEKDVISWSTVIACYVQNGAAAEALRVFNEMIDDGTEPNVATVLCVLQACAAANDLE 262

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+  H  ++R   E  + +  A++D Y++C S      +F ++PK++VVSW  +I G+ 
Sbjct: 263 QGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPKKDVVSWVALISGFT 322

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G    ++  F  M       P+   ++ VL +CS +  L   +  HSY+  +Y    +
Sbjct: 323 LNGMAHRSIEEFSIMLLENNTRPDAILMLKVLGSCSELGFLKQAECFHSYV-IKYGFDSN 381

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             +G +++ +Y +CG +G A +VFN +A KD + W+++I+G  ++G G +AL+ F+ M+ 
Sbjct: 382 PFIGASLVELYSRCGSLGNASKVFNEIALKDTVVWTSLITGYGIHGKGTKALETFNHMVR 441

Query: 306 NA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
           ++ V P++VTF++++SACSH GL+ +GL +F+ M   Y + P ++HYA +VD+ GR G L
Sbjct: 442 SSEVKPNEVTFLSILSACSHAGLIHEGLRIFELMVNDYRLAPNLEHYAVLVDLLGRVGEL 501

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           + A    + MP      + G LL ACRIH+N EM + + + L   +    G + LMSN +
Sbjct: 502 DTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKQLFELESNHAGYYMLMSNMY 561

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
                WE+  K+R+ +++ G+KK    S IE+   +
Sbjct: 562 GVKGEWENVEKLRNSVKQRGIKKGLAESLIEIRRKV 597



 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 118/391 (30%), Positives = 209/391 (53%), Gaps = 10/391 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHL-HDIFIQNSLLHFYVTVKDIFSAHQI 67
           +++T   ALKAC      +    IH  + +   L  D+++ +SL++ YV    +  A ++
Sbjct: 40  DNFTLPVALKACGELREVKYGEMIHGFLKKNVTLGSDLYVGSSLIYMYVKCGRMTEALRM 99

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF----CGIDVKPNANTLVSVLSACSSLVS 123
           FN +  PD+V+W++++SG  K G   +A++ F       DV P+  TL++++SAC+ L +
Sbjct: 100 FNELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMATASDVTPDRVTLITLVSACTKLSN 159

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            +LG+ +H   +R    N++ L N++L+ Y +  +      LF  M +++V+SW+T+I  
Sbjct: 160 SRLGRCVHGFVMRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMMAEKDVISWSTVIAC 219

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           Y + G   EA+ VF EM      EPN AT++ VL AC++ + L  G+  H  ++ R  L 
Sbjct: 220 YVQNGAAAEALRVFNEMIDDG-TEPNVATVLCVLQACAAANDLEQGRKTHE-LAIRKGLE 277

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
               V  A+++MY+KC     A  VF+ +  KD +SW  +ISG  +NG   ++++ FS+M
Sbjct: 278 TEVKVSTALVDMYMKCFSPEEAYAVFSRIPKKDVVSWVALISGFTLNGMAHRSIEEFSIM 337

Query: 304 II-NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
           ++ N   PD +  + ++ +CS  G + Q    F +    Y         A +V++Y R G
Sbjct: 338 LLENNTRPDAILMLKVLGSCSELGFLKQAEC-FHSYVIKYGFDSNPFIGASLVELYSRCG 396

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
            L  A     E+ ++ +  VW +L+    IH
Sbjct: 397 SLGNASKVFNEIALK-DTVVWTSLITGYGIH 426



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 175/337 (51%), Gaps = 27/337 (8%)

Query: 79  WTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSL 135
           W T++  LS+    ++ +  F  +   + KP+  TL   L AC  L   K G+ IH    
Sbjct: 9   WNTLLKSLSRDKHWEQVMCHFSQMFRDEEKPDNFTLPVALKACGELREVKYGEMIHGFLK 68

Query: 136 RNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAV 194
           +N+   +++ + ++++  Y++CG +     +F ++ K ++V+W++M+ G+ + G   +AV
Sbjct: 69  KNVTLGSDLYVGSSLIYMYVKCGRMTEALRMFNELEKPDIVTWSSMVSGFEKNGSPYQAV 128

Query: 195 SVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR---YDLSVSNLVGNA 251
             F+ M    +  P+  TL+ ++SAC+ +S    G+ VH ++  R    DLS+     N+
Sbjct: 129 EFFRRMATASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVMRRGFSNDLSLV----NS 184

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD 311
           ++N Y K      A+ +F M+A KD ISWSTVI+    NG   +AL++F+ MI +   P+
Sbjct: 185 LLNCYAKSRAFKEAVNLFKMMAEKDVISWSTVIACYVQNGAAAEALRVFNEMIDDGTEPN 244

Query: 312 DVTFIALISACSHGGLVDQG-----LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
             T + ++ AC+    ++QG     L + K + T      +++    +VDMY +    EE
Sbjct: 245 VATVLCVLQACAAANDLEQGRKTHELAIRKGLET------EVKVSTALVDMYMKCFSPEE 298

Query: 367 AEAFIREMPIEAEWSVWGALLNACRI----HRNDEMF 399
           A A    +P + +   W AL++   +    HR+ E F
Sbjct: 299 AYAVFSRIP-KKDVVSWVALISGFTLNGMAHRSIEEF 334



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 134/292 (45%), Gaps = 17/292 (5%)

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           M KR +  W T++   +     ++ +  F +M + +E +P+  TL   L AC  +  + +
Sbjct: 1   MTKRTLYQWNTLLKSLSRDKHWEQVMCHFSQMFRDEE-KPDNFTLPVALKACGELREVKY 59

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
           G+ +H ++     L     VG+++I MYVKCG +  A+++FN L   D ++WS+++SG  
Sbjct: 60  GEMIHGFLKKNVTLGSDLYVGSSLIYMYVKCGRMTEALRMFNELEKPDIVTWSSMVSGFE 119

Query: 289 MNGCGRQALQLFSLMIINA-VFPDDVTFIALISAC-----SHGGLVDQGLILFKAMSTVY 342
            NG   QA++ F  M   + V PD VT I L+SAC     S  G    G ++ +  S   
Sbjct: 120 KNGSPYQAVEFFRRMATASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVMRRGFSNDL 179

Query: 343 EIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN--DEMFD 400
            +V  +      ++ Y ++   +EA    + M  E +   W  ++ AC +      E   
Sbjct: 180 SLVNSL------LNCYAKSRAFKEAVNLFKMMA-EKDVISWSTVI-ACYVQNGAAAEALR 231

Query: 401 RIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCS 452
              + + +    +V T   +    A A+  E   K  +   R GL+ +   S
Sbjct: 232 VFNEMIDDGTEPNVATVLCVLQACAAANDLEQGRKTHELAIRKGLETEVKVS 283


>gi|357128207|ref|XP_003565766.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Brachypodium distachyon]
          Length = 734

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 144/460 (31%), Positives = 256/460 (55%), Gaps = 5/460 (1%)

Query: 4   CPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFS 63
           CP   N +  T  L A S+       +++H  V++ G +  + ++NSL+  Y     + +
Sbjct: 214 CPLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVENSLVTMYAKAGCMDA 273

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSS 120
           A  +F S    + ++W+ +I+G S+ G  + A+ MF  +      P   TLV VL+ACS 
Sbjct: 274 AFHVFESSKERNSITWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNACSD 333

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           + +   GK  H   ++   E  + + +A++D Y +CG +      F +  + ++V WT M
Sbjct: 334 VGTLMEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQFSELDIVLWTAM 393

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           + G+ + G  ++A+ ++  M+K +   PN  T+ ++L AC+ ++AL  GK +H+ I  ++
Sbjct: 394 VTGHVQNGEFEQALMLYARMDK-EGVFPNTLTITSLLRACAGLAALEPGKQLHTQI-LKF 451

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
              +   VG+A+  MY KCG++   + VF  + ++D I+W+++ISG + NG G  A+ LF
Sbjct: 452 GFGLGASVGSALSTMYSKCGNLEDGMVVFRRMPHRDVIAWNSIISGFSQNGRGNDAINLF 511

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
             M +    PD VTFI ++ ACSH GLVD+G   F++M   Y + P++ HYAC+VD+  R
Sbjct: 512 EEMKLEGTAPDPVTFINVLCACSHMGLVDRGWTYFRSMIKDYGLTPRLDHYACMVDILSR 571

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           AG+L EA+ FI  + I+    +W  +L ACR  R+ ++     + L++        + L+
Sbjct: 572 AGMLSEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGEKLMDLGTGDSAAYILL 631

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           SN +A   +W D  ++R  ++ +G+ K  GCSW+E+N  +
Sbjct: 632 SNIYAAQRKWNDVERVRYLMKLVGVSKDPGCSWVELNSRV 671



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 113/455 (24%), Positives = 209/455 (45%), Gaps = 33/455 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIF--SAHQ 66
           +H  F + L+  S     +    +HA  ++ G      + NSL+ FY +   +F  +A  
Sbjct: 14  SHTQFIEHLRRASRPRDGEA---LHAWALKSGSSSHAPVSNSLITFYSSFPRLFLPAAFA 70

Query: 67  IFNSV--VFPDVVSWTTIISGLSKCGFHKEAI-------DMFCGIDVKPNANTLVSVLSA 117
           +F  +     DV SW ++++ LS    H   +        M     + P+ ++  +  +A
Sbjct: 71  VFADIPAAARDVASWNSLLNPLS----HHRPLAALSHFRSMLSSSTILPSPHSFAAAFTA 126

Query: 118 CSSLVSHKLGKAIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
            +   S   G  +HA + +  +  +N+ +  A+L+ Y + G +     +F +MP RN VS
Sbjct: 127 AARAHSASAGAVVHALACKLPSASSNVFVSTALLNMYCKLGLIPDAQLVFDEMPHRNEVS 186

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           W  M+ GYA R   +EA  +F++M        NE     VLSA S    L  G  VH  +
Sbjct: 187 WAAMVAGYAARKCSQEAFELFRQMLGECPLHKNEFVATAVLSAISVPLGLPMGVQVHGLV 246

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
                +   + V N+++ MY K G +  A  VF     ++ I+WS +I+G + NG    A
Sbjct: 247 VKDGMVGFVS-VENSLVTMYAKAGCMDAAFHVFESSKERNSITWSAMITGYSQNGNAESA 305

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY--ACV 354
           +++FS M      P + T + +++ACS  G + +G    +A   + ++  ++Q Y  + +
Sbjct: 306 VRMFSQMHAAGFPPTEFTLVGVLNACSDVGTLMEGK---QAHGLMVKLGFEVQVYVKSAL 362

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDR--IRQDLVNKKGV 412
           VDMY + G + +A+    +   E +  +W A++     H  +  F++  +    ++K+GV
Sbjct: 363 VDMYAKCGCIGDAKECFNQFS-ELDIVLWTAMVTG---HVQNGEFEQALMLYARMDKEGV 418

Query: 413 SVGTFALMS--NTFAGADRWEDTNKIRDEIRRMGL 445
              T  + S     AG    E   ++  +I + G 
Sbjct: 419 FPNTLTITSLLRACAGLAALEPGKQLHTQILKFGF 453


>gi|449522252|ref|XP_004168141.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g37310-like [Cucumis sativus]
          Length = 635

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 162/489 (33%), Positives = 263/489 (53%), Gaps = 46/489 (9%)

Query: 9   NHYTFTQALKA-CSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           + +T T +LKA  SL      A E+H+ ++  G  +DIF+ N+L+ FY    ++  A  +
Sbjct: 106 DRFTVTCSLKALASLFSNSGLAKEVHSFILRRGLEYDIFVVNALITFYSRCDELVLARIM 165

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF----CGIDVKPNANTLVSVLSACSSLVS 123
           F+ +   D VSW  +++G S+ G ++E  ++F      ++VKPNA T VSVL AC+   S
Sbjct: 166 FDRMPERDTVSWNAMLAGYSQGGSYEECKELFRVMLSSVEVKPNALTAVSVLQACAQ--S 223

Query: 124 HKLGKAIHAHSLRNLNENNIILD----NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
           + L   I  H  R +NE+ I +D    NA++  Y +CG L     LF +MP+++ +++ +
Sbjct: 224 NDLTFGIEVH--RFVNESQIKMDVSLWNAVIGLYAKCGILDYARELFEEMPEKDGITYCS 281

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTK------------------------------EAEPN 209
           MI GY   GF  +A+ +F+E E+ +                                 PN
Sbjct: 282 MISGYMVHGFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPN 341

Query: 210 EATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
             TL ++L   S  S L  GK +H Y I   YD ++   V  A+I+ Y KCG +  A  V
Sbjct: 342 TVTLASILPVFSHFSTLKGGKEIHGYAIRNTYDRNI--YVATAIIDSYAKCGYLHGAQLV 399

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F+ +  +  I+W+++IS  A++G    AL LF  M+ N + PD VTF ++++AC+H G +
Sbjct: 400 FDQIKGRSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGEL 459

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
           D+   +F  +   Y I P ++HYAC+V +  RAG L +A  FI +MP+E    VWGALLN
Sbjct: 460 DEAWKIFNVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLN 519

Query: 389 ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
              +  + E+   +   L   +  + G + +M+N ++ + RW+D + IRD ++ + LKK 
Sbjct: 520 GASVAGDVELGKYVFDRLFEIEPENTGNYVIMANLYSQSGRWKDADTIRDLMKEVRLKKI 579

Query: 449 TGCSWIEVN 457
            G SWIE +
Sbjct: 580 PGNSWIETS 588



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 103/363 (28%), Positives = 185/363 (50%), Gaps = 23/363 (6%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N+  + + ++ C+     +   ++HA ++    + D F+ + L+ FY     I  A+ +F
Sbjct: 2   NYSAYGRLIQHCTDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVF 61

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI------DVKPNANTLVSVLSACSSLV 122
             +   ++ SW  +    +    H + + +F  +      DVKP+  T+   L A +SL 
Sbjct: 62  GKIPRKNIFSWNALFISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLKALASLF 121

Query: 123 SHK-LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
           S+  L K +H+  LR   E +I + NA++ FY RC  L     +F +MP+R+ VSW  M+
Sbjct: 122 SNSGLAKEVHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDTVSWNAML 181

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS-TRY 240
            GY++ G  +E   +F+ M  + E +PN  T V+VL AC+  + L+FG  VH +++ ++ 
Sbjct: 182 AGYSQGGSYEECKELFRVMLSSVEVKPNALTAVSVLQACAQSNDLTFGIEVHRFVNESQI 241

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
            + VS  + NAVI +Y KCG +  A ++F  +  KD I++ ++ISG  ++G   QA+ LF
Sbjct: 242 KMDVS--LWNAVIGLYAKCGILDYARELFEEMPEKDGITYCSMISGYMVHGFVNQAMDLF 299

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMS---------TVYEIVPQMQHY 351
                    P   T+ A+IS        +  + +F+AM          T+  I+P   H+
Sbjct: 300 R----EQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHF 355

Query: 352 ACV 354
           + +
Sbjct: 356 STL 358



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 145/284 (51%), Gaps = 7/284 (2%)

Query: 114 VLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
           ++  C+  +  ++GK +HA  + +    +  L + ++ FY + GS+     +F K+P++N
Sbjct: 9   LIQHCTDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKIPRKN 68

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEM--EKTKEAEPNEATLVNVLSACSSI-SALSFGK 230
           + SW  +   Y       + + +F  +    + + +P+  T+   L A +S+ S     K
Sbjct: 69  IFSWNALFISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLKALASLFSNSGLAK 128

Query: 231 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMN 290
            VHS+I  R  L     V NA+I  Y +C ++ +A  +F+ +  +D +SW+ +++G +  
Sbjct: 129 EVHSFI-LRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDTVSWNAMLAGYSQG 187

Query: 291 GCGRQALQLFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQ 349
           G   +  +LF +M+ +  V P+ +T ++++ AC+    +  G+ + + ++   +I   + 
Sbjct: 188 GSYEECKELFRVMLSSVEVKPNALTAVSVLQACAQSNDLTFGIEVHRFVNES-QIKMDVS 246

Query: 350 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
            +  V+ +Y + G+L+ A     EMP E +   + ++++   +H
Sbjct: 247 LWNAVIGLYAKCGILDYARELFEEMP-EKDGITYCSMISGYMVH 289


>gi|147804811|emb|CAN64701.1| hypothetical protein VITISV_037299 [Vitis vinifera]
          Length = 1111

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 154/430 (35%), Positives = 265/430 (61%), Gaps = 11/430 (2%)

Query: 28   KALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS 87
            +A   H  +I   +  D  +QN+LL  Y     +  A + F  V   +  +W  ++SG  
Sbjct: 686  EAKAFHGLIIRRHYTLDQMVQNALLSMYCKFGFLKLAEKFFGRVNEQNFEAWNLMVSGYG 745

Query: 88   KCGFHKEAIDMF----CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNI 143
            K G   + I +F    C + ++ ++N+LVSV+S+CS L +  L ++IH + ++NL + N+
Sbjct: 746  KIGLIMKCIGLFREMQC-LGIESDSNSLVSVVSSCSQLGATHLARSIHCYMIKNLMDENV 804

Query: 144  ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
             ++N+++D Y + G+L     +F ++P R++V+W T+I  YA  G   EA+S++ +M   
Sbjct: 805  SVNNSLIDMYGKSGNLTIARRIFCRIP-RDIVTWNTLISSYAHCGHFAEALSLYDKM-VL 862

Query: 204  KEAEPNEATLVNVLSACSSISALSFGKYVHSYIST-RYDLSVSNLVGNAVINMYVKCGDV 262
            ++ +PN ATLV VLSACS +++L  G+ VH+YI+  +++ ++S  +  A+I+MY KCG +
Sbjct: 863  EDLKPNSATLVXVLSACSHLASLEEGEKVHNYINGGKFEFNLS--IATALIDMYAKCGQL 920

Query: 263  GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
              + ++FN +  +D I+W+ +ISG  M+G  R A++ F  M  ++  P+ +TF+A++SAC
Sbjct: 921  EKSREIFNSMHERDVITWNVMISGYGMHGDARSAIEXFQQMEESSAKPNGLTFLAVLSAC 980

Query: 323  SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
            +H GLV +G  LF  M   Y + P ++HYAC+VD+ GR+G L+EAEA +  MPI  +  V
Sbjct: 981  AHAGLVKEGKYLFGKMQD-YSVAPNLKHYACMVDLLGRSGNLQEAEALVLSMPISPDGGV 1039

Query: 383  WGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442
            WGALL++C+IH   EM  RI +  +     + G + ++SN ++   +WE+  K R  ++ 
Sbjct: 1040 WGALLSSCKIHNEIEMGIRIAKHAIXSDVENDGYYVMISNMYSSIGKWEEAEKARGIMKE 1099

Query: 443  MGLKKKTGCS 452
             G++KKTG S
Sbjct: 1100 RGVRKKTGWS 1109



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 111/414 (26%), Positives = 208/414 (50%), Gaps = 16/414 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T     +AC       +   +H  V++ G  +   +Q+SLL  Y    +   AH+ F
Sbjct: 566 NFRTLEGGFQACGNLGALLEGRCLHGLVVKTGMDYSQVVQSSLLSMYSKCGNPEEAHRSF 625

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHK 125
             V+  D++SWT++IS  S+ G+  E IDMF  + V    P+   +  +LS+ S+ +   
Sbjct: 626 CEVLNKDIISWTSMISAYSRMGWATECIDMFWEMLVSGIYPDGIVISCMLSSFSNSMRVF 685

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
             KA H   +R     + ++ NA+L  Y + G L      F ++ ++N  +W  M+ GY 
Sbjct: 686 EAKAFHGLIIRRHYTLDQMVQNALLSMYCKFGFLKLAEKFFGRVNEQNFEAWNLMVSGYG 745

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSV 244
           + G   + + +F+EM+     E +  +LV+V+S+CS + A    + +H Y I    D +V
Sbjct: 746 KIGLIMKCIGLFREMQ-CLGIESDSNSLVSVVSSCSQLGATHLARSIHCYMIKNLMDENV 804

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           S  V N++I+MY K G++ IA ++F  +  +D ++W+T+IS  A  G   +AL L+  M+
Sbjct: 805 S--VNNSLIDMYGKSGNLTIARRIFCRIP-RDIVTWNTLISSYAHCGHFAEALSLYDKMV 861

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMS-TVYEIVPQMQHYACVVDMYGRAGL 363
           +  + P+  T + ++SACSH   +++G  +   ++   +E    +     ++DMY + G 
Sbjct: 862 LEDLKPNSATLVXVLSACSHLASLEEGEKVHNYINGGKFEF--NLSIATALIDMYAKCGQ 919

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQDLVNKKGVS 413
           LE++      M  E +   W  +++   +H +     E F ++ +      G++
Sbjct: 920 LEKSREIFNSMH-ERDVITWNVMISGYGMHGDARSAIEXFQQMEESSAKPNGLT 972



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 115/239 (48%), Gaps = 13/239 (5%)

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFC------GIDVKPNANTLVSVLSACSSLVSH 124
           +   +V  W   ++G SK G     ++  C      G   +PN  TL     AC +L + 
Sbjct: 529 ICIRNVEFWRRHMNGESKMG-----LECLCEMHRIGGDGERPNFRTLEGGFQACGNLGAL 583

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
             G+ +H   ++   + + ++ +++L  Y +CG+       F ++  ++++SWT+MI  Y
Sbjct: 584 LEGRCLHGLVVKTGMDYSQVVQSSLLSMYSKCGNPEEAHRSFCEVLNKDIISWTSMISAY 643

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           +  G+  E + +F EM       P+   +  +LS+ S+   +   K  H  I  R+  ++
Sbjct: 644 SRMGWATECIDMFWEM-LVSGIYPDGIVISCMLSSFSNSMRVFEAKAFHGLIIRRH-YTL 701

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
             +V NA+++MY K G + +A + F  +  ++  +W+ ++SG    G   + + LF  M
Sbjct: 702 DQMVQNALLSMYCKFGFLKLAEKFFGRVNEQNFEAWNLMVSGYGKIGLIMKCIGLFREM 760


>gi|297723953|ref|NP_001174340.1| Os05g0313600 [Oryza sativa Japonica Group]
 gi|222631076|gb|EEE63208.1| hypothetical protein OsJ_18018 [Oryza sativa Japonica Group]
 gi|255676232|dbj|BAH93068.1| Os05g0313600 [Oryza sativa Japonica Group]
          Length = 620

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 149/418 (35%), Positives = 241/418 (57%), Gaps = 7/418 (1%)

Query: 49  NSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEA----IDMFCGIDV 104
           +SL+  Y  + D  +A ++FN +   DVVSW  ++    + G + E      DM     V
Sbjct: 167 HSLITIYSYLDDPGAARKVFNGIPSRDVVSWNAMMKAYGRVGMNGEVGRMLRDMVKDGAV 226

Query: 105 KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGY 164
            PNA TL  VL+AC       LG+ +   S     E + ++ +A++  Y +CG +A    
Sbjct: 227 VPNAVTLAVVLAACRDEGDLVLGRWVEEWSKSAGMETDSLVGSALVGMYEKCGEIAEARR 286

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224
           +F  +  ++VV+W  MI GYA+ G   EA+S+F  M+K     P++ TL  VLSACS++ 
Sbjct: 287 VFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVC-PDKITLAGVLSACSAVG 345

Query: 225 ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVI 284
           AL  G  +  Y S R  L  +  VG A+++MY KCGD+  AI+VF  +  K+  SW+ +I
Sbjct: 346 ALELGSELDGYASCR-GLYNNVYVGTALVDMYAKCGDLDKAIEVFRKMRCKNVASWNALI 404

Query: 285 SGLAMNGCGRQALQLFSLMI-INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 343
            GLA NG G +A+Q F LM   + + PDD+TFI ++SAC H GLV  G   F ++++ ++
Sbjct: 405 CGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTSEFQ 464

Query: 344 IVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIR 403
           I+P+++HY+C+VD   R+G LEE   FI ++P + +  + GALL ACR  +N E+ +R+ 
Sbjct: 465 IIPKIEHYSCMVDPLARSGHLEEVWDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVI 524

Query: 404 QDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
             ++  +  +   + + S  +A + R +D+ K+R  +R  G+ K  GCSW+E++  + 
Sbjct: 525 NRIIQLEPTNSWNYVVSSKIYASSGRLDDSAKMRGLMRERGVNKTPGCSWVEISGKVL 582



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 111/207 (53%), Gaps = 5/207 (2%)

Query: 40  GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF 99
           G   D  + ++L+  Y    +I  A ++F+S++  DVV+W  +I+G ++ G   EAI +F
Sbjct: 260 GMETDSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLF 319

Query: 100 CGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAH-SLRNLNENNIILDNAILDFYIR 155
             +    V P+  TL  VLSACS++ + +LG  +  + S R L  NN+ +  A++D Y +
Sbjct: 320 HNMKKAGVCPDKITLAGVLSACSAVGALELGSELDGYASCRGLY-NNVYVGTALVDMYAK 378

Query: 156 CGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVN 215
           CG L     +F KM  +NV SW  +I G A  G   EA+  F+ M      +P++ T + 
Sbjct: 379 CGDLDKAIEVFRKMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIG 438

Query: 216 VLSACSSISALSFGKYVHSYISTRYDL 242
           VLSAC     +  GK   + +++ + +
Sbjct: 439 VLSACVHAGLVKDGKRWFNSLTSEFQI 465



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 7/119 (5%)

Query: 4   CPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFS 63
           CP   +  T    L ACS     +   E+  +    G  +++++  +L+  Y    D+  
Sbjct: 328 CP---DKITLAGVLSACSAVGALELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLDK 384

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSAC 118
           A ++F  +   +V SW  +I GL+  G   EAI  F  +     +KP+  T + VLSAC
Sbjct: 385 AIEVFRKMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSAC 443



 Score = 42.7 bits (99), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 71/156 (45%), Gaps = 11/156 (7%)

Query: 239 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQ 298
           + DL+  +   +++I +Y    D G A +VFN +  +D +SW+ ++      G   +  +
Sbjct: 156 KIDLNSHDHTVHSLITIYSYLDDPGAARKVFNGIPSRDVVSWNAMMKAYGRVGMNGEVGR 215

Query: 299 LFSLMIIN-AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV--- 354
           +   M+ + AV P+ VT   +++AC      D+G ++       +     M+  + V   
Sbjct: 216 MLRDMVKDGAVVPNAVTLAVVLAACR-----DEGDLVLGRWVEEWSKSAGMETDSLVGSA 270

Query: 355 -VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
            V MY + G + EA      + I+ +   W A++  
Sbjct: 271 LVGMYEKCGEIAEARRVFDSI-IDKDVVAWNAMITG 305


>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
 gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 154/467 (32%), Positives = 249/467 (53%), Gaps = 43/467 (9%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG- 90
           IHAHVI+Y      F+   ++      +D+  A  +F  V  P+   +  +I   +    
Sbjct: 33  IHAHVIKYSLSQSSFLVTKMVDVCDKTEDLGYASLLFKQVKEPNGYLYNAMIRAHTHNKV 92

Query: 91  ------FHKEAI---DMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNEN 141
                 F+KE +   D      + P+  T   V+ +CS LV + LGK +HAH  +   ++
Sbjct: 93  YALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSGLVCYNLGKQVHAHLCKFGPKS 152

Query: 142 NIILDNAILDFYIRC-------------------------------GSLASCGYLFVKMP 170
           NI ++NA++D Y +C                               G +   G LF  MP
Sbjct: 153 NITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGHVGVGQMRKAGALFDLMP 212

Query: 171 KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGK 230
            R +VSWT MI GY   G   +A+ VF++M+     EP+E ++++VL AC+ + AL  GK
Sbjct: 213 YRTIVSWTAMISGYTRLGSYADALYVFRQMQIVG-VEPDEISIISVLPACAQLGALEVGK 271

Query: 231 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMN 290
           ++H Y   R  L     + NA++ MY KCG +G A Q+F+ ++  D ISWST+I GLA +
Sbjct: 272 WIHMYCD-RNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSKGDVISWSTMIGGLANH 330

Query: 291 GCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQH 350
           G  R+A++LF  M    + P+ +TF+ L+SAC+H G  ++GL  F +MS  Y I P+++H
Sbjct: 331 GKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWNEGLAYFDSMSKDYHIEPEVEH 390

Query: 351 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKK 410
           Y C+VD+ GRAG L +A   I +MP++ +  +WG+LL++CR H N ++     + L   +
Sbjct: 391 YGCLVDILGRAGRLSQALDVIEKMPMKPDSKIWGSLLSSCRTHSNLDIAIIAMEHLEELE 450

Query: 411 GVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
               G + L+SN +A   +W+  +++R  I+   +KK  G S I++N
Sbjct: 451 PDDTGNYVLLSNIYADLAKWDGVSRMRKLIKSKSMKKTPGSSLIDIN 497



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 169/351 (48%), Gaps = 38/351 (10%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           P   + +TF   +K+CS    +    ++HAH+ ++G   +I ++N+L+  Y     +  A
Sbjct: 114 PIFPDRFTFPFVIKSCSGLVCYNLGKQVHAHLCKFGPKSNITMENALIDMYTKCASLLDA 173

Query: 65  HQIFNSVVFPDVVSWTTI-------------------------------ISGLSKCGFHK 93
           H++F+ +V  D +SW +I                               ISG ++ G + 
Sbjct: 174 HKVFDGMVERDAISWNSIISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYA 233

Query: 94  EAIDMFCG---IDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAIL 150
           +A+ +F     + V+P+  +++SVL AC+ L + ++GK IH +  RN       + NA++
Sbjct: 234 DALYVFRQMQIVGVEPDEISIISVLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALM 293

Query: 151 DFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNE 210
           + Y +CG +     LF +M K +V+SW+TMIGG A  G  +EA+ +F+ M+K K  EPN 
Sbjct: 294 EMYSKCGCIGQAYQLFDQMSKGDVISWSTMIGGLANHGKAREAIELFKRMKKAK-IEPNG 352

Query: 211 ATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN 270
            T + +LSAC+     + G      +S  Y +         ++++  + G +  A+ V  
Sbjct: 353 ITFLGLLSACAHAGFWNEGLAYFDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIE 412

Query: 271 MLAYK-DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALIS 320
            +  K D   W +++S    +      + + ++  +  + PDD     L+S
Sbjct: 413 KMPMKPDSKIWGSLLSSCRTH--SNLDIAIIAMEHLEELEPDDTGNYVLLS 461


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 141/456 (30%), Positives = 250/456 (54%), Gaps = 10/456 (2%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +TF+  LKA    H      ++H   +  G   D  + N +LHFY     +     +FN 
Sbjct: 245 FTFSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNE 304

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLVSHK 125
           +   D VS+  +IS  S+   ++E++++F      G D +       ++LS  ++L S +
Sbjct: 305 MPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRR--NFPFATMLSIAANLSSLQ 362

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           +G+ +H  ++    ++ + + N+++D Y +C        +F  + +R+ VSWT +I GY 
Sbjct: 363 VGRQVHCQAIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYV 422

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           ++G     + +F +M +      +++T   VL A +  ++L  GK +H++I    +L  +
Sbjct: 423 QKGLHGAGLKLFTKM-RGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLE-N 480

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
              G+ +++MY KCG +  A+QVF  +  ++ +SW+ +IS  A NG G  A+  F+ MI 
Sbjct: 481 VFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQ 540

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
           + + PD V+ + ++ ACSH G V+QG   F+AMS +Y I P+ +HYAC++D+ GR G   
Sbjct: 541 SGLQPDSVSILGVLIACSHCGFVEQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFA 600

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVN-KKGVSVGTFALMSNTF 424
           EAE  + EMP E +  +W ++LNACRI++N  + +R  + L + +K      +  MSN +
Sbjct: 601 EAEKLMDEMPFEPDEIMWSSVLNACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIY 660

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           A A +WE+   ++  +R  G+KK    SW+EVN  I
Sbjct: 661 AAAGKWENVRHVKKAMRERGIKKVPAYSWVEVNHKI 696



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/389 (27%), Positives = 189/389 (48%), Gaps = 15/389 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQ--NSLLHFYVTVKDIFSAHQ 66
           ++ TFT  L  C+ A P     ++HA  ++ G   ++F+   N LL  Y  V+ +  A  
Sbjct: 140 DYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACV 199

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVS 123
           +F  ++  D V++ T+I+G  K G + EAI +F  +     KP+  T   VL A   L  
Sbjct: 200 LFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGLHD 259

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
             LG+ +H  S+      +  + N IL FY +   +     LF +MP+ + VS+  +I  
Sbjct: 260 FALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISS 319

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           Y++    +E++++F+EM+       N      +LS  +++S+L  G+ VH         S
Sbjct: 320 YSQAEQYEESLNLFREMQCMGFDRRN-FPFATMLSIAANLSSLQVGRQVHCQAIVATADS 378

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           + + VGN++++MY KC     A  +F  L+ +  +SW+ +ISG    G     L+LF+ M
Sbjct: 379 ILH-VGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKM 437

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY---ACVVDMYGR 360
               +  D  TF  ++ A +  G     L+L K +         +++    + +VDMY +
Sbjct: 438 RGANLRADQSTFATVLKASA--GFAS--LLLGKQLHAFIIRSGNLENVFSGSGLVDMYAK 493

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNA 389
            G +++A     EMP     S W AL++A
Sbjct: 494 CGSIKDAVQVFEEMPDRNAVS-WNALISA 521



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 113/247 (45%), Gaps = 17/247 (6%)

Query: 137 NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSV 196
            +   N +  N ++  Y++ G L+S  +LF  MP R VV+WT ++G YA      EA  +
Sbjct: 69  EMPHKNTVSTNTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKL 128

Query: 197 FQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSNLVGNAVINM 255
           F++M ++    P+  T   +L  C+     +    VH++ +   +D ++   V N ++  
Sbjct: 129 FRQMCRSCTL-PDYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKS 187

Query: 256 YVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTF 315
           Y +   + +A  +F  +  KD ++++T+I+G   +G   +A+ LF  M  +   P D TF
Sbjct: 188 YCEVRRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTF 247

Query: 316 IALISACSHGGLVD-------QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
             ++ A    GL D        GL +    S    +  Q+ H+      Y +   + E  
Sbjct: 248 SGVLKAVV--GLHDFALGQQLHGLSVTTGFSRDASVGNQILHF------YSKHDRVLETR 299

Query: 369 AFIREMP 375
               EMP
Sbjct: 300 NLFNEMP 306


>gi|242066256|ref|XP_002454417.1| hypothetical protein SORBIDRAFT_04g030430 [Sorghum bicolor]
 gi|241934248|gb|EES07393.1| hypothetical protein SORBIDRAFT_04g030430 [Sorghum bicolor]
          Length = 703

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 150/449 (33%), Positives = 252/449 (56%), Gaps = 5/449 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T   A+ A +     +K    HA+V+     +D+ + N++L FYV + D  ++ ++F  +
Sbjct: 202 TLVSAMSAAAQLGHVRKGQACHAYVVRNSLGYDLALVNTVLSFYVKIGDFQASMRLFEGM 261

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGK 128
              DV++W+ +I G  + G   E + M+       V+PN+ TLVSVL AC+ +V  + GK
Sbjct: 262 TDRDVITWSCMIKGYVQHGDAHEGLRMYREMVKARVQPNSVTLVSVLQACALVVDAEEGK 321

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H  ++    E  + +  A++D Y++C        LF +MPK++VV+W  +IGG  +  
Sbjct: 322 RVHRVAVSIGCELEVGVATALVDMYMKCSCHEEAMCLFHRMPKKDVVAWAAVIGGLTQNE 381

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
              E++ VF+ M    +  P+  T+V VL+ACS          +H Y+  R   + +  V
Sbjct: 382 LPGESLHVFKCM-LLDDHVPDAITMVKVLAACSEFGGTRLAICLHGYL-VRNGFNNNAFV 439

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
             A++++Y KCGD+  A++VF     KD + W ++I+G   +G G++A+ L+  MI +++
Sbjct: 440 AAALLDLYSKCGDIDSAVRVFEGTTEKDIVVWGSMIAGYGAHGLGQEAVALYQRMIASSI 499

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            P+ VTF++++SACSH GLV +G+ +F +M+ V+ +VP  +H + +VD+ GRAG L+EA 
Sbjct: 500 QPNSVTFVSVLSACSHSGLVQEGIQIFDSMTQVFGVVPNAEHQSAMVDLLGRAGELQEAI 559

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
            FIR M   A    W ALL ACR H N +M     + L+      VG + L++N +A  +
Sbjct: 560 RFIRGMDGRAVAHTWCALLAACREHNNTKMSKVAAKSLLKLDPDHVGYYNLLTNIYAYDE 619

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +WE     RD +R   L+K  G S +EV 
Sbjct: 620 KWESVKDTRDMVRGRDLRKVPGYSSVEVG 648



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 136/262 (51%), Gaps = 4/262 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L+AC+L    ++   +H   +  G   ++ +  +L+  Y+       A  +F
Sbjct: 300 NSVTLVSVLQACALVVDAEEGKRVHRVAVSIGCELEVGVATALVDMYMKCSCHEEAMCLF 359

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-CGI--DVKPNANTLVSVLSACSSLVSHK 125
           + +   DVV+W  +I GL++     E++ +F C +  D  P+A T+V VL+ACS     +
Sbjct: 360 HRMPKKDVVAWAAVIGGLTQNELPGESLHVFKCMLLDDHVPDAITMVKVLAACSEFGGTR 419

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           L   +H + +RN   NN  +  A+LD Y +CG + S   +F    ++++V W +MI GY 
Sbjct: 420 LAICLHGYLVRNGFNNNAFVAAALLDLYSKCGDIDSAVRVFEGTTEKDIVVWGSMIAGYG 479

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G  +EAV+++Q M  +   +PN  T V+VLSACS    +  G  +   ++  + +  +
Sbjct: 480 AHGLGQEAVALYQRMIASS-IQPNSVTFVSVLSACSHSGLVQEGIQIFDSMTQVFGVVPN 538

Query: 246 NLVGNAVINMYVKCGDVGIAIQ 267
               +A++++  + G++  AI+
Sbjct: 539 AEHQSAMVDLLGRAGELQEAIR 560



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 182/381 (47%), Gaps = 23/381 (6%)

Query: 25  PHQKALEIHAHVIEY----GHLHDIFIQNSLLH--FYVTVKDIF-----SAHQIFNSVVF 73
           P QK LE  A  I       HLH   +++ LLH   ++T   +       A  +F+    
Sbjct: 3   PLQKLLEAAAATISTPLAAAHLHANLLRSGLLHSSHHLTAHVLAWYPPGLARDLFDEFPS 62

Query: 74  PDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAH 133
           P       ++    +    + AI +   + V+ +  T   +L AC++L S   G+A+HA 
Sbjct: 63  PTPRLANALLRAHIRARQWRAAILLGPRLRVRLDGFTFSLLLRACAALPSLAHGRAVHAV 122

Query: 134 SLRNLNEN-NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKE 192
           ++R+   + +  +  AI+  Y RCG +      +  + K ++V  T+++ GY + G  +E
Sbjct: 123 AIRSCTASEDAFVATAIVQMYARCGDMVGAINAYGVLEKPDIVLRTSVVTGYEQNGMAEE 182

Query: 193 AVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI---STRYDLSVSNLVG 249
           A+  F      +       TLV+ +SA + +  +  G+  H+Y+   S  YDL++     
Sbjct: 183 ALEFFARNVVGQGVMLTPVTLVSAMSAAAQLGHVRKGQACHAYVVRNSLGYDLALV---- 238

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
           N V++ YVK GD   ++++F  +  +D I+WS +I G   +G   + L+++  M+   V 
Sbjct: 239 NTVLSFYVKIGDFQASMRLFEGMTDRDVITWSCMIKGYVQHGDAHEGLRMYREMVKARVQ 298

Query: 310 PDDVTFIALISACSHGGLVDQGLILFK-AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
           P+ VT ++++ AC+     ++G  + + A+S   E+  ++     +VDMY +    EEA 
Sbjct: 299 PNSVTLVSVLQACALVVDAEEGKRVHRVAVSIGCEL--EVGVATALVDMYMKCSCHEEAM 356

Query: 369 AFIREMPIEAEWSVWGALLNA 389
                MP + +   W A++  
Sbjct: 357 CLFHRMP-KKDVVAWAAVIGG 376


>gi|414887968|tpg|DAA63982.1| TPA: hypothetical protein ZEAMMB73_972364 [Zea mays]
          Length = 700

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 144/418 (34%), Positives = 243/418 (58%), Gaps = 7/418 (1%)

Query: 49  NSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DV 104
           +SL+  Y  + D  +A ++F+ +   DVVSW +++    + G   E   M   +     V
Sbjct: 156 HSLITMYSCLDDHLAARRVFDGISHRDVVSWNSMVKAYERAGMVAEVEGMLRSMVTEGAV 215

Query: 105 KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGY 164
            PN  TL  VL+AC    +  LG+ +         E + ++ +A++  Y +CG +A    
Sbjct: 216 APNGVTLAVVLTACRDAGNLVLGRWVEEWVRSAGMEVDSLIGSALVGMYEKCGEMAEARR 275

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224
           +F  +  ++VV+W  MI GYA+ G   EA+++F  M +     P++ TLV VLS+C+++ 
Sbjct: 276 VFDGIRHKDVVAWNAMITGYAQNGMSNEAIALFHSMREAGLC-PDKITLVGVLSSCAAVG 334

Query: 225 ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVI 284
           AL  G  + +Y + R  L  +  VG A+++MY KCGD+  A  VF  + +K++ SW+ +I
Sbjct: 335 ALKLGVELDTY-AMRRGLYNNVYVGTALVDMYAKCGDLEKATHVFGKMPFKNEASWNALI 393

Query: 285 SGLAMNGCGRQALQLFSLMII-NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 343
            GLA NG G  A+Q F LM     + PDD+TFI ++SAC H GL++ G  LF +++ V++
Sbjct: 394 CGLAFNGRGYDAIQQFELMRDEKGLQPDDITFIGVLSACVHAGLLEYGRQLFNSLTPVFK 453

Query: 344 IVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIR 403
           I+P+++HY+C+VD+  RAG LEEA  FI EMP + +  + GALL ACR  +N E+ +R+ 
Sbjct: 454 IIPRIEHYSCIVDLLARAGHLEEAWDFIEEMPGKVDAVMLGALLAACRKCKNTEVGERVI 513

Query: 404 QDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
             ++  +  +   + + S  +A +D+ +++ ++   +R  G+ K  GCSW+EVN  + 
Sbjct: 514 NRIMKLEPSNSWNYVVSSKIYATSDKMDESARMIGLMRERGVNKTPGCSWVEVNGKVL 571



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 159/308 (51%), Gaps = 15/308 (4%)

Query: 102 IDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR-NLNENNIILDNAILDFYIRCGSLA 160
           + V+P+A TL  +L A +   +  L ++ HA   +  L +++  + + I  +      LA
Sbjct: 111 VRVRPDAYTLPFLLLAAARCPAPALARSAHALLEKIGLGDHDHTVHSLITMYSCLDDHLA 170

Query: 161 SCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
           +   +F  +  R+VVSW +M+  Y   G   E   + + M       PN  TL  VL+AC
Sbjct: 171 A-RRVFDGISHRDVVSWNSMVKAYERAGMVAEVEGMLRSMVTEGAVAPNGVTLAVVLTAC 229

Query: 221 SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
                L  G++V  ++ +   + V +L+G+A++ MY KCG++  A +VF+ + +KD ++W
Sbjct: 230 RDAGNLVLGRWVEEWVRS-AGMEVDSLIGSALVGMYEKCGEMAEARRVFDGIRHKDVVAW 288

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL--FKAM 338
           + +I+G A NG   +A+ LF  M    + PD +T + ++S+C+  G +  G+ L  +   
Sbjct: 289 NAMITGYAQNGMSNEAIALFHSMREAGLCPDKITLVGVLSSCAAVGALKLGVELDTYAMR 348

Query: 339 STVYEIVPQMQHY--ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND 396
             +Y  V     Y    +VDMY + G LE+A     +MP + E S W AL+  C +  N 
Sbjct: 349 RGLYNNV-----YVGTALVDMYAKCGDLEKATHVFGKMPFKNEAS-WNALI--CGLAFNG 400

Query: 397 EMFDRIRQ 404
             +D I+Q
Sbjct: 401 RGYDAIQQ 408


>gi|357501421|ref|XP_003620999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124365545|gb|ABN09779.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496014|gb|AES77217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 601

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 153/454 (33%), Positives = 255/454 (56%), Gaps = 12/454 (2%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           PSSY   TFT  LK CS++   ++  +IH  V++     D+++  SL+  YV   D+  A
Sbjct: 121 PSSY---TFTLILKGCSVSDAKRQGFQIHGVVLKNWFCLDLYVGTSLVDMYVKFGDVGFA 177

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSH 124
            ++F+ +    +VSWT +I G ++CG   EA  +F G+  +  A   V +          
Sbjct: 178 RKVFDEMSVRSLVSWTAVIVGYARCGDMVEARKLFDGMVDRDVAAFNVMIDGYV------ 231

Query: 125 KLGKAIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
           K+G+   A  L + +   N+I   +++  Y   G +    +LF  MP++NV+SW  MI G
Sbjct: 232 KMGRMDLARDLFDKMRVKNVISWTSMVHGYSEDGDVDEARFLFDCMPEKNVLSWNAMIRG 291

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           Y + G   +A+ +F EM    + E NE T+V+VL A + +SAL  G +VH ++  R  L 
Sbjct: 292 YCQNGRSHDALKLFCEMRGNVDVEMNEVTVVSVLPAVADLSALDLGGWVHGFVQ-RNQLD 350

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
            S  V NA+++MY KCG++G A  VF  +  KD  SW+ +I+G  +NGC ++AL++F++M
Sbjct: 351 GSVHVCNALVDMYAKCGEIGKAKLVFEEMTEKDTGSWNALINGYGVNGCAKEALEVFAMM 410

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
           +     P+ +T  +++SAC+H GLV++G   F+AM   + IVPQ++HY C++D+ GRAG 
Sbjct: 411 LREGFEPNQITMTSVLSACNHCGLVEEGRRCFEAMER-FGIVPQIEHYGCMIDLLGRAGR 469

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           L+EAE  I+ MP +    +  + L AC    +    +RI +  V  +    G + ++ N 
Sbjct: 470 LDEAEKLIQAMPYDPNEIILTSFLFACCYFEDVSRAERILKVAVKMEKEGAGDYVMLRNL 529

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +A   RW D   +++ +++ G  K+   S IEV+
Sbjct: 530 YATERRWADVEDVKEMMKKRGSNKEVAWSVIEVD 563



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 136/292 (46%), Gaps = 25/292 (8%)

Query: 105 KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGY 164
           +P++ T   +L  CS   + + G  IH   L+N    ++ +  +++D Y++ G +     
Sbjct: 120 RPSSYTFTLILKGCSVSDAKRQGFQIHGVVLKNWFCLDLYVGTSLVDMYVKFGDVGFARK 179

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224
           +F +M  R++VSWT +I GYA  G   EA  +F  M      + + A    ++     + 
Sbjct: 180 VFDEMSVRSLVSWTAVIVGYARCGDMVEARKLFDGM-----VDRDVAAFNVMIDGYVKMG 234

Query: 225 ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVI 284
            +   + +   +  +  +S +++V     + Y + GDV  A  +F+ +  K+ +SW+ +I
Sbjct: 235 RMDLARDLFDKMRVKNVISWTSMV-----HGYSEDGDVDEARFLFDCMPEKNVLSWNAMI 289

Query: 285 SGLAMNGCGRQALQLFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 343
            G   NG    AL+LF  M  N  V  ++VT ++++ A +    +D G         V+ 
Sbjct: 290 RGYCQNGRSHDALKLFCEMRGNVDVEMNEVTVVSVLPAVADLSALDLG-------GWVHG 342

Query: 344 IVPQMQHYACV------VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
            V + Q    V      VDMY + G + +A+    EM  E +   W AL+N 
Sbjct: 343 FVQRNQLDGSVHVCNALVDMYAKCGEIGKAKLVFEEMT-EKDTGSWNALING 393



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 11/195 (5%)

Query: 195 SVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVIN 254
           +++ +  K     P+  T   +L  CS   A   G  +H  +   +   +   VG ++++
Sbjct: 108 TLYNQFSKDCFFRPSSYTFTLILKGCSVSDAKRQGFQIHGVVLKNW-FCLDLYVGTSLVD 166

Query: 255 MYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVT 314
           MYVK GDVG A +VF+ ++ +  +SW+ VI G A  G   +A +LF  M+   V      
Sbjct: 167 MYVKFGDVGFARKVFDEMSVRSLVSWTAVIVGYARCGDMVEARKLFDGMVDRDV----AA 222

Query: 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
           F  +I      G +D    LF  M      V  +  +  +V  Y   G ++EA      M
Sbjct: 223 FNVMIDGYVKMGRMDLARDLFDKMR-----VKNVISWTSMVHGYSEDGDVDEARFLFDCM 277

Query: 375 PIEAEWSVWGALLNA 389
           P E     W A++  
Sbjct: 278 P-EKNVLSWNAMIRG 291


>gi|334184678|ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546770|sp|O64705.2|PP184_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g34400
 gi|330253874|gb|AEC08968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 149/458 (32%), Positives = 257/458 (56%), Gaps = 13/458 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +T+     AC+          +H+ + + G   D+ I +SL+  Y     +  A ++F
Sbjct: 131 DKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLF 190

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           + +   D VSW ++ISG S+ G+ K+A+D+F  ++    +P+  TLVS+L ACS L   +
Sbjct: 191 DEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLR 250

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ +   ++      +  L + ++  Y +CG L S   +F +M K++ V+WT MI  Y+
Sbjct: 251 TGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYS 310

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G   EA  +F EMEKT    P+  TL  VLSAC S+ AL  GK + ++ S   +LS+ 
Sbjct: 311 QNGKSSEAFKLFFEMEKTG-VSPDAGTLSTVLSACGSVGALELGKQIETHAS---ELSLQ 366

Query: 246 N--LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           +   V   +++MY KCG V  A++VF  +  K++ +W+ +I+  A  G  ++AL LF  M
Sbjct: 367 HNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM 426

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
              +V P D+TFI ++SAC H GLV QG   F  MS+++ +VP+++HY  ++D+  RAG+
Sbjct: 427 ---SVPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGM 483

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDR-IRQDLVNKKGVSVGTFALMSN 422
           L+EA  F+   P + +  +  A+L AC   ++  + ++ +R  +  K+  + G + + SN
Sbjct: 484 LDEAWEFMERFPGKPDEIMLAAILGACHKRKDVAIREKAMRMLMEMKEAKNAGNYVISSN 543

Query: 423 TFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
             A    W+++ K+R  +R  G+ K  GCSWIE+   +
Sbjct: 544 VLADMKMWDESAKMRALMRDRGVVKTPGCSWIEIEGEL 581



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 109/355 (30%), Positives = 196/355 (55%), Gaps = 14/355 (3%)

Query: 42  LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC-GFHKEAIDMFC 100
           LH +   N L+   V + D   +  +F+    P+  S+  +I GL+     H+ A+ ++ 
Sbjct: 62  LHSVEKPNFLIPKAVELGDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYR 121

Query: 101 GID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCG 157
            +    +KP+  T   V  AC+ L    +G+++H+   +   E ++ ++++++  Y +CG
Sbjct: 122 RMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCG 181

Query: 158 SLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVL 217
            +     LF ++ +R+ VSW +MI GY+E G+ K+A+ +F++ME+ +  EP+E TLV++L
Sbjct: 182 QVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEE-EGFEPDERTLVSML 240

Query: 218 SACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK 277
            ACS +  L  G+ +     T+  + +S  +G+ +I+MY KCGD+  A +VFN +  KD+
Sbjct: 241 GACSHLGDLRTGRLLEEMAITK-KIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDR 299

Query: 278 ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKA 337
           ++W+ +I+  + NG   +A +LF  M    V PD  T   ++SAC   G ++ G    K 
Sbjct: 300 VAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELG----KQ 355

Query: 338 MST-VYEIVPQMQHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           + T   E+  Q   Y    +VDMYG+ G +EEA      MP++ E + W A++ A
Sbjct: 356 IETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNE-ATWNAMITA 409


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 153/433 (35%), Positives = 246/433 (56%), Gaps = 11/433 (2%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHF-YVTVKD-IFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
           I AH++      D F+ + L+    VT+   +  AH+IF+    P++  W TII G S  
Sbjct: 26  IQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHHPNLFMWNTIIRGYSIS 85

Query: 90  GFHKEAI----DMF-CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
                AI    DMF CGI   PN+ T   VL AC  L+    G+ +H+  ++   +    
Sbjct: 86  DSPITAIALYRDMFLCGIS--PNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDFETP 143

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           L N ++  Y  CG +     +F +MP+ +  SW+TM+ GYA+ G   EA+ +F+EM+  +
Sbjct: 144 LVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQ-AE 202

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
               +  TL +V+  C  + AL  GK+VHSY+  +  + +  ++G A++ MY KCG +  
Sbjct: 203 NVSSDAFTLASVVGVCGDLGALDLGKWVHSYMD-KEGVKIDVVLGTALVGMYSKCGSLDN 261

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
           A++VF  +A +D  +WST+I+G A++G G +ALQLF  M  +   P+ VTF +++SACSH
Sbjct: 262 ALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSH 321

Query: 325 GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 384
            GLV++G  +F+ M T Y+I PQ++HY C+VD++ RAG++  A  FI+ MPIE    +W 
Sbjct: 322 SGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWR 381

Query: 385 ALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444
            LL AC+ H   ++ + I + ++     S   + L+SN +A   RW    ++R  ++   
Sbjct: 382 TLLGACKTHGYKDLGEHISRKILKLDPSSPENYVLVSNVYASLGRWSSVCQVRSLMKDKA 441

Query: 445 LKKKTGCSWIEVN 457
            KK+ G S IE+N
Sbjct: 442 PKKQHGWSSIEIN 454



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 152/295 (51%), Gaps = 5/295 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M  C  S N YTF   LKAC       +  E+H+ +++ G   +  + N L+  Y     
Sbjct: 98  MFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGC 157

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           +  A  +F+ +  PD  SW+T++SG ++ G   EA+ +F  +   +V  +A TL SV+  
Sbjct: 158 MDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGV 217

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C  L +  LGK +H++  +   + +++L  A++  Y +CGSL +   +F  M +R+V +W
Sbjct: 218 CGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAW 277

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
           +TMI GYA  G  ++A+ +F  M+++K   PN  T  +VLSACS    +  G  +   + 
Sbjct: 278 STMIAGYAIHGHGEKALQLFDAMKRSKTI-PNCVTFTSVLSACSHSGLVEKGHQIFETMW 336

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS-WSTVISGLAMNG 291
           T Y ++        +++++ + G VG A +    +  +  +  W T++     +G
Sbjct: 337 TEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHG 391


>gi|357521772|ref|XP_003612377.1| Selenium binding protein-like protein [Medicago truncatula]
 gi|355513712|gb|AES95335.1| Selenium binding protein-like protein [Medicago truncatula]
          Length = 611

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 153/471 (32%), Positives = 268/471 (56%), Gaps = 14/471 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    S +H+TF   LKACS  +       +H+ +++ G   ++++   LL+ YV  K+
Sbjct: 98  MLQNGYSPDHFTFPFVLKACSFIYDQVSGKCVHSCILKSGFEANVYVATGLLNMYVECKN 157

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           + S  ++F+ +   +VV+WT +I+G       +EA+++F  +    V+ N  T+V+ L A
Sbjct: 158 MESGLKVFDKIPKWNVVAWTCLINGYVINDQPREALEVFKEMGRWGVEANEVTMVNALIA 217

Query: 118 CSSLVSHKLGKAIHAHSLRN-------LNENNIILDNAILDFYIRCGSLASCGYLFVKMP 170
           C+       G+ +H    +         + +N+IL  AI++ Y +CG L     LF KMP
Sbjct: 218 CARCRDVDTGRWVHERVCKAGYDPFVFASNSNVILATAIVEMYAKCGWLNVARELFNKMP 277

Query: 171 KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGK 230
           +RN+V+W  MI  Y +     EA+ +F  M       P++AT ++VLS C+    L+ G+
Sbjct: 278 ERNIVAWNCMINAYNQYERYNEALGLFFYMLANGFC-PDKATFLSVLSVCARRCVLALGE 336

Query: 231 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN-MLAYKDKISWSTVISGLAM 289
            VH+Y+  + +++    +  A+++MY K G++G A ++FN  L  KD + W+++I+ LA+
Sbjct: 337 TVHAYL-LKSNMAKDIALATALLDMYAKNGELGSAQKIFNNSLEKKDVVMWTSMINALAI 395

Query: 290 NGCGRQALQLFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQM 348
           +G G +AL LF +M  ++ + PD +T+I ++ ACSH GLV++    F  M+  Y I+P+ 
Sbjct: 396 HGHGNEALSLFQIMQEDSSLVPDHITYIGVLFACSHVGLVEEAQKQFNLMTKSYGILPEK 455

Query: 349 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVN 408
           +HY+C+VD+  RAG   EAE  +  M I    ++WGALLN C+IH N  +  +++  L  
Sbjct: 456 EHYSCMVDLLSRAGHFREAEKLMETMSIRPNIAIWGALLNGCQIHENIPVASQVKVRLAE 515

Query: 409 KKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPS 459
            + +  G +AL+SN +A + +WE+ N+ R  ++   + K  G S +E+  S
Sbjct: 516 LEPIQSGIYALLSNIYANSGKWEEVNRTRKMMKHKRIAKTIGHSSVEMKVS 566


>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 568

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 158/464 (34%), Positives = 248/464 (53%), Gaps = 39/464 (8%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           +IHAHV++       F+   +L     +  +  A  +F  ++ P++ ++  II   +   
Sbjct: 28  KIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSYATLLFKQLLHPNIFTYNAIIRTYAHNR 87

Query: 91  FHKEAIDMFCGI------DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
            H  AI +F  +       V P+  T   V+ +C+ ++ H+LG  +H    +   + + I
Sbjct: 88  HHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGMQVHGLVYKFGADFHCI 147

Query: 145 LDNAILDFYIRCGSLASC--------------------GY-----------LFVKMPKRN 173
            +NA++D Y + G L +                     GY           LF  MP R 
Sbjct: 148 TENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFDDMPVRT 207

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
           +VSWTTMI GY   G   +A+ VF+EM+     EP+E +++ VL AC+ + AL  GK++H
Sbjct: 208 IVSWTTMITGYGRMGCYGDALDVFREMQMVG-IEPDEISIIAVLPACAQLGALEVGKWIH 266

Query: 234 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG 293
            Y      L  + +  NA+I MY KCG +  A  +F+ L  KD ISWST+I GLA +G G
Sbjct: 267 MYADKNGFLRKTGIC-NALIEMYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLANHGKG 325

Query: 294 RQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
            +A+QLF  M    V P+++TF+ ++ ACSH GL D+GL  F  MS  Y I P+++HY C
Sbjct: 326 YEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEGLKYFDVMSASYHIEPEIEHYGC 385

Query: 354 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVS 413
           ++D+ GR+G L +A   I +MPI+ +  +W +LL++CRIHRN ++     + L+  +   
Sbjct: 386 LIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLLSSCRIHRNLQIAVIAVKQLMELEPEE 445

Query: 414 VGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            G + L++N +A   +WED + IR  IR   +KK  G S IEVN
Sbjct: 446 SGNYVLLANMYAEHGKWEDVSNIRKLIRNKRIKKTPGSSSIEVN 489



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 154/312 (49%), Gaps = 36/312 (11%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +TF   +K+C+    H+  +++H  V ++G       +N+L+  Y    D+ +A ++F
Sbjct: 110 DKFTFPFVIKSCTGILCHRLGMQVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVF 169

Query: 69  NSVVFPDVVSWT-------------------------------TIISGLSKCGFHKEAID 97
             +   DV+SW                                T+I+G  + G + +A+D
Sbjct: 170 EEMSHRDVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALD 229

Query: 98  MFCG---IDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
           +F     + ++P+  ++++VL AC+ L + ++GK IH ++ +N       + NA+++ Y 
Sbjct: 230 VFREMQMVGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYA 289

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           +CG +     LF ++ +++V+SW+TMIGG A  G   EA+ +F+EM K + A PNE T +
Sbjct: 290 KCGCIDEAWNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVA-PNEITFL 348

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
            VL ACS       G      +S  Y +         +I++  + G +G A+   + +  
Sbjct: 349 GVLLACSHTGLWDEGLKYFDVMSASYHIEPEIEHYGCLIDLLGRSGCLGQALDTISKMPI 408

Query: 275 K-DKISWSTVIS 285
           K D   W++++S
Sbjct: 409 KPDSRIWNSLLS 420



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 136/300 (45%), Gaps = 38/300 (12%)

Query: 128 KAIHAHSLR-NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           K IHAH ++ +L+++N ++   +LD     G ++    LF ++   N+ ++  +I  YA 
Sbjct: 27  KKIHAHVVKLSLSQSNFLV-TKMLDSCDNLGHVSYATLLFKQLLHPNIFTYNAIIRTYAH 85

Query: 187 RGFCKEAVSVFQEM--EKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
                 A+SVF +M    T    P++ T   V+ +C+ I     G  VH  +  ++    
Sbjct: 86  NRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGMQVHGLV-YKFGADF 144

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI-------------------------- 278
             +  NA+I+MY K GD+  A +VF  ++++D I                          
Sbjct: 145 HCITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFDDMP 204

Query: 279 -----SWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI 333
                SW+T+I+G    GC   AL +F  M +  + PD+++ IA++ AC+  G ++ G  
Sbjct: 205 VRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVGKW 264

Query: 334 LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           +    +     + +      +++MY + G ++EA     ++ +E +   W  ++     H
Sbjct: 265 I-HMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQL-VEKDVISWSTMIGGLANH 322



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 112/280 (40%), Gaps = 17/280 (6%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           L AC+     +    IH +  + G L    I N+L+  Y     I  A  +F+ +V  DV
Sbjct: 250 LPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLVEKDV 309

Query: 77  VSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLG-KAIHA 132
           +SW+T+I GL+  G   EAI +F   C + V PN  T + VL ACS       G K    
Sbjct: 310 ISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEGLKYFDV 369

Query: 133 HSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIGG-YAERGFC 190
            S     E  I     ++D   R G L        KMP K +   W +++      R   
Sbjct: 370 MSASYHIEPEIEHYGCLIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLLSSCRIHRNLQ 429

Query: 191 KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGN 250
              ++V Q ME   E   N   L N+ +       +S  + +      +     S++  N
Sbjct: 430 IAVIAVKQLMELEPEESGNYVLLANMYAEHGKWEDVSNIRKLIRNKRIKKTPGSSSIEVN 489

Query: 251 AVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMN 290
            V+  +V   D            +  ++ W  ++ GLA+N
Sbjct: 490 NVVQEFVSSDDSK---------PFSQEVFW--ILEGLALN 518


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 144/447 (32%), Positives = 250/447 (55%), Gaps = 6/447 (1%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           + AC+       A  IHAH+        +F+ NSL+H Y     +  A ++F+ +   D+
Sbjct: 71  ITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDM 130

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAH 133
            SWT++I+G ++     EA+ +  G+     KPN  T  S+L A  +  S  +G+ IHA 
Sbjct: 131 CSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHAL 190

Query: 134 SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
           +++    +++ + +A+LD Y RCG +     +F ++  +N VSW  +I G+A +G  +  
Sbjct: 191 TVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETT 250

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVI 253
           + +F EM++    E    T  +V SA + I AL  GK+VH+++  +    +S  VGN ++
Sbjct: 251 LLMFAEMQRNG-FEATHFTYSSVFSAIAGIGALEQGKWVHAHM-IKSGERLSAFVGNTIL 308

Query: 254 NMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDV 313
           +MY K G +  A +VF+ +  KD ++W+++++  A  G GR+A+  F  M    V  + +
Sbjct: 309 DMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQI 368

Query: 314 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIRE 373
           TF+++++ACSHGGLV +G   F  M   Y + P++ HY  VVD+ GRAGLL +A  FI +
Sbjct: 369 TFLSILTACSHGGLVKEGKQYFDMMKE-YNLEPEIDHYVTVVDLLGRAGLLNDALVFIFK 427

Query: 374 MPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDT 433
           MP++   +VWGALL +CR+H+N ++       +        G   L+ N +A   +W+  
Sbjct: 428 MPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAA 487

Query: 434 NKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            ++R  ++  G+KK+  CSW+E+  S+
Sbjct: 488 ARVRKMMKATGVKKEPACSWVEIENSV 514



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 158/307 (51%), Gaps = 4/307 (1%)

Query: 83  ISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN 142
           +   +  G  ++ +D     ++        S+++AC+   S    +AIHAH   +    +
Sbjct: 39  VPAAASTGIIRDTLDSVDARELAATPRLYHSLITACARYRSLDDARAIHAHLAGSQFAGS 98

Query: 143 IILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202
           + LDN+++  Y +CG++A    +F  MP R++ SWT++I GYA+     EA+ +   M +
Sbjct: 99  VFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLR 158

Query: 203 TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 262
            +  +PN  T  ++L A  + ++   G+ +H+ ++ +YD      VG+A+++MY +CG +
Sbjct: 159 GR-FKPNGFTFASLLKAAGASASSGIGEQIHA-LTVKYDWHDDVYVGSALLDMYARCGRM 216

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
            +AI VF+ L  K+ +SW+ +I+G A  G G   L +F+ M  N       T+ ++ SA 
Sbjct: 217 DMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAI 276

Query: 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
           +  G ++QG  +   M    E +        ++DMY ++G + +A      +  + +   
Sbjct: 277 AGIGALEQGKWVHAHMIKSGERLSAFVG-NTILDMYAKSGSMIDARKVFDRVD-KKDVVT 334

Query: 383 WGALLNA 389
           W ++L A
Sbjct: 335 WNSMLTA 341



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 120/233 (51%), Gaps = 4/233 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML      N +TF   LKA   +       +IHA  ++Y    D+++ ++LL  Y     
Sbjct: 156 MLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGR 215

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           +  A  +F+ +   + VSW  +I+G ++ G  +  + MF  +     +    T  SV SA
Sbjct: 216 MDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSA 275

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
            + + + + GK +HAH +++    +  + N ILD Y + GS+     +F ++ K++VV+W
Sbjct: 276 IAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTW 335

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGK 230
            +M+  +A+ G  +EAV+ F+EM K      N+ T +++L+ACS    +  GK
Sbjct: 336 NSMLTAFAQYGLGREAVTHFEEMRKCG-VHLNQITFLSILTACSHGGLVKEGK 387



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 10/181 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
            H+T++    A +     ++   +HAH+I+ G     F+ N++L  Y     +  A ++F
Sbjct: 265 THFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVF 324

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLVS 123
           + V   DVV+W ++++  ++ G  +EA+  F     CG+ +  N  T +S+L+ACS    
Sbjct: 325 DRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHL--NQITFLSILTACSHGGL 382

Query: 124 HKLGKAIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMI 181
            K GK  +   ++  N E  I     ++D   R G L        KMP K     W  ++
Sbjct: 383 VKEGKQ-YFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALL 441

Query: 182 G 182
           G
Sbjct: 442 G 442


>gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
 gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana]
          Length = 617

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 149/458 (32%), Positives = 257/458 (56%), Gaps = 13/458 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +T+     AC+          +H+ + + G   D+ I +SL+  Y     +  A ++F
Sbjct: 127 DKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLF 186

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           + +   D VSW ++ISG S+ G+ K+A+D+F  ++    +P+  TLVS+L ACS L   +
Sbjct: 187 DEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLR 246

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ +   ++      +  L + ++  Y +CG L S   +F +M K++ V+WT MI  Y+
Sbjct: 247 TGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYS 306

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G   EA  +F EMEKT    P+  TL  VLSAC S+ AL  GK + ++ S   +LS+ 
Sbjct: 307 QNGKSSEAFKLFFEMEKTG-VSPDAGTLSTVLSACGSVGALELGKQIETHAS---ELSLQ 362

Query: 246 N--LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           +   V   +++MY KCG V  A++VF  +  K++ +W+ +I+  A  G  ++AL LF  M
Sbjct: 363 HNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM 422

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
              +V P D+TFI ++SAC H GLV QG   F  MS+++ +VP+++HY  ++D+  RAG+
Sbjct: 423 ---SVPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGM 479

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDR-IRQDLVNKKGVSVGTFALMSN 422
           L+EA  F+   P + +  +  A+L AC   ++  + ++ +R  +  K+  + G + + SN
Sbjct: 480 LDEAWEFMERFPGKPDEIMLAAILGACHKRKDVAIREKAMRMLMEMKEAKNAGNYVISSN 539

Query: 423 TFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
             A    W+++ K+R  +R  G+ K  GCSWIE+   +
Sbjct: 540 VLADMKMWDESAKMRALMRDRGVVKTPGCSWIEIEGEL 577



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 109/355 (30%), Positives = 196/355 (55%), Gaps = 14/355 (3%)

Query: 42  LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC-GFHKEAIDMFC 100
           LH +   N L+   V + D   +  +F+    P+  S+  +I GL+     H+ A+ ++ 
Sbjct: 58  LHSVEKPNFLIPKAVELGDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYR 117

Query: 101 GID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCG 157
            +    +KP+  T   V  AC+ L    +G+++H+   +   E ++ ++++++  Y +CG
Sbjct: 118 RMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCG 177

Query: 158 SLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVL 217
            +     LF ++ +R+ VSW +MI GY+E G+ K+A+ +F++ME+ +  EP+E TLV++L
Sbjct: 178 QVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEE-EGFEPDERTLVSML 236

Query: 218 SACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK 277
            ACS +  L  G+ +     T+  + +S  +G+ +I+MY KCGD+  A +VFN +  KD+
Sbjct: 237 GACSHLGDLRTGRLLEEMAITK-KIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDR 295

Query: 278 ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKA 337
           ++W+ +I+  + NG   +A +LF  M    V PD  T   ++SAC   G ++ G    K 
Sbjct: 296 VAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELG----KQ 351

Query: 338 MST-VYEIVPQMQHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           + T   E+  Q   Y    +VDMYG+ G +EEA      MP++ E + W A++ A
Sbjct: 352 IETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNE-ATWNAMITA 405


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 143/357 (40%), Positives = 215/357 (60%), Gaps = 4/357 (1%)

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCG 163
           V+P+ +T   +L + +S     LG+++HA  LR     +  +  +++  Y   G +    
Sbjct: 60  VQPDFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMAR 119

Query: 164 YLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME--KTKEAEPNEATLVNVLSACS 221
            LF  MP+RNV+SW+ MI GY   G  KEA+++F+EM+     +  PNE T+  VL+AC 
Sbjct: 120 NLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACG 179

Query: 222 SISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF-NMLAYKDKISW 280
            + AL  GK+ H+YI  +  + V  ++G A+I+MY KCG V  A  VF N+   KD ++W
Sbjct: 180 RLGALEHGKWAHAYID-KCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAW 238

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340
           S +ISGLAM+G   + + LFS MI   V P+ VTF+A+  AC HGGLV +G    + M+ 
Sbjct: 239 SAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTE 298

Query: 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFD 400
            Y I+P +QHY C+VD+YGRAG ++EA   ++ MP+E +  VWGALL+  R+H + E  +
Sbjct: 299 DYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCE 358

Query: 401 RIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
              + L+  +  + G + L+SN +A   RWED   +RD +  MG+KK  GCS IEV 
Sbjct: 359 LALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVG 415



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 149/295 (50%), Gaps = 12/295 (4%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           P  +      Q+  + SL H       +HA ++ +G   D F+Q SL+  Y +   +  A
Sbjct: 62  PDFHTFPFLLQSFASPSLLH---LGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMA 118

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGI-DVKPNANTLVSVLSAC 118
             +F  +   +V+SW+ +I+G  +CG +KEA+ +F      G+ DV+PN  T+  VL+AC
Sbjct: 119 RNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAAC 178

Query: 119 SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKM-PKRNVVSW 177
             L + + GK  HA+  +     +++L  A++D Y +CGS+    ++F  + P ++V++W
Sbjct: 179 GRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAW 238

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
           + MI G A  G  +E V +F +M   +   PN  T + V  AC     +S GK     ++
Sbjct: 239 SAMISGLAMHGLAEECVGLFSKM-INQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMT 297

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF-NMLAYKDKISWSTVISGLAMNG 291
             Y +  +      ++++Y + G +  A  V  +M    D + W  ++SG  M+G
Sbjct: 298 EDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHG 352



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 21/210 (10%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +T +  L AC      +     HA++ + G   D+ +  +L+  Y     +  A  +F
Sbjct: 167 NEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVF 226

Query: 69  NSV-VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSAC--SSLV 122
           +++    DV++W+ +ISGL+  G  +E + +F  +    V+PNA T ++V  AC    LV
Sbjct: 227 SNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLV 286

Query: 123 SHKLGKAIHAHSLRNLNENNIILDN-----AILDFYIRCGSLASCGYLFVKMP-KRNVVS 176
           S   GK      LR + E+  I+        ++D Y R G +     +   MP + +V+ 
Sbjct: 287 SE--GKDY----LRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLV 340

Query: 177 WTTMIGGYAERG---FCKEAVSVFQEMEKT 203
           W  ++ G    G    C+ A+    E+E T
Sbjct: 341 WGALLSGSRMHGDIETCELALKKLIELEPT 370


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 144/447 (32%), Positives = 250/447 (55%), Gaps = 6/447 (1%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           + AC+       A  IHAH+        +F+ NSL+H Y     +  A ++F+ +   D+
Sbjct: 71  ITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDM 130

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAH 133
            SWT++I+G ++     EA+ +  G+     KPN  T  S+L A  +  S  +G+ IHA 
Sbjct: 131 CSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHAL 190

Query: 134 SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
           +++    +++ + +A+LD Y RCG +     +F ++  +N VSW  +I G+A +G  +  
Sbjct: 191 TVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETT 250

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVI 253
           + +F EM++    E    T  +V SA + I AL  GK+VH+++  +    +S  VGN ++
Sbjct: 251 LLMFAEMQRNG-FEATHFTYSSVFSAIAGIGALEQGKWVHAHM-IKSGERLSAFVGNTIL 308

Query: 254 NMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDV 313
           +MY K G +  A +VF+ +  KD ++W+++++  A  G GR+A+  F  M    V  + +
Sbjct: 309 DMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQI 368

Query: 314 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIRE 373
           TF+++++ACSHGGLV +G   F  M   Y + P++ HY  VVD+ GRAGLL +A  FI +
Sbjct: 369 TFLSILTACSHGGLVKEGKQYFDMMKE-YNLEPEIDHYVTVVDLLGRAGLLNDALVFIFK 427

Query: 374 MPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDT 433
           MP++   +VWGALL +CR+H+N ++       +        G   L+ N +A   +W+  
Sbjct: 428 MPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAA 487

Query: 434 NKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            ++R  ++  G+KK+  CSW+E+  S+
Sbjct: 488 ARVRKMMKATGVKKEPACSWVEIENSV 514



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 158/307 (51%), Gaps = 4/307 (1%)

Query: 83  ISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN 142
           +   +  G  ++ +D     ++        S+++AC+   S    +AIHAH   +    +
Sbjct: 39  VPAAASTGIIRDTLDSVDARELAATPRLYHSLITACARYRSLDDARAIHAHLAGSQFAGS 98

Query: 143 IILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202
           + LDN+++  Y +CG++A    +F  MP R++ SWT++I GYA+     EA+ +   M +
Sbjct: 99  VFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLR 158

Query: 203 TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 262
            +  +PN  T  ++L A  + ++   G+ +H+ ++ +YD      VG+A+++MY +CG +
Sbjct: 159 GR-FKPNGFTFASLLKAAGASASSGIGEQIHA-LTVKYDWHDDVYVGSALLDMYARCGRM 216

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
            +AI VF+ L  K+ +SW+ +I+G A  G G   L +F+ M  N       T+ ++ SA 
Sbjct: 217 DMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAI 276

Query: 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
           +  G ++QG  +   M    E +        ++DMY ++G + +A      +  + +   
Sbjct: 277 AGIGALEQGKWVHAHMIKSGERLSAFVG-NTILDMYAKSGSMIDARKVFDRVD-KKDVVT 334

Query: 383 WGALLNA 389
           W ++L A
Sbjct: 335 WNSMLTA 341



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 118/225 (52%), Gaps = 4/225 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +TF   LKA   +       +IHA  ++Y    D+++ ++LL  Y     +  A  +F
Sbjct: 164 NGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVF 223

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           + +   + VSW  +I+G ++ G  +  + MF  +     +    T  SV SA + + + +
Sbjct: 224 DQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALE 283

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK +HAH +++    +  + N ILD Y + GS+     +F ++ K++VV+W +M+  +A
Sbjct: 284 QGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFA 343

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGK 230
           + G  +EAV+ F+EM K      N+ T +++L+ACS    +  GK
Sbjct: 344 QYGLGREAVTHFEEMRKCG-VHLNQITFLSILTACSHGGLVKEGK 387



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 10/181 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
            H+T++    A +     ++   +HAH+I+ G     F+ N++L  Y     +  A ++F
Sbjct: 265 THFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVF 324

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLVS 123
           + V   DVV+W ++++  ++ G  +EA+  F     CG+ +  N  T +S+L+ACS    
Sbjct: 325 DRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHL--NQITFLSILTACSHGGL 382

Query: 124 HKLGKAIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMI 181
            K GK  +   ++  N E  I     ++D   R G L        KMP K     W  ++
Sbjct: 383 VKEGKQ-YFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALL 441

Query: 182 G 182
           G
Sbjct: 442 G 442


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 148/463 (31%), Positives = 252/463 (54%), Gaps = 38/463 (8%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKD--IFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           +IH  +++ G + D    + LL F  +     +  A  +F+ +  P+   W T+I G S 
Sbjct: 36  QIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSN 95

Query: 89  CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR--------- 136
               +EA+ ++  +    V  NA T   +L ACSS+ + +  + IHAH ++         
Sbjct: 96  SKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYT 155

Query: 137 ----------------------NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV 174
                                  +++ + +  N+++D Y +CG +     +F  MP+RN+
Sbjct: 156 TNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNI 215

Query: 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
           +SWT+MI G    G  KEA+++F  M+ T   + +   LV+ L AC+ +  L  GK++H+
Sbjct: 216 ISWTSMISGCVGAGKPKEALNLFHRMQ-TAGIKLDNVALVSTLQACADLGVLDQGKWIHA 274

Query: 235 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
           YI  ++++ +  ++G  +I+MY KCGD+  AI+VF  +  K    W+ +ISG A++G GR
Sbjct: 275 YIK-KHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGR 333

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
           +AL+ F  M    V P+ +TF  +++ACSH GLV +  +LF++M  ++   P ++HY C+
Sbjct: 334 EALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCM 393

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414
           VD+ GRAGLL+EAE  I  MP++   ++WGALLNAC IH N E+  +I + L+       
Sbjct: 394 VDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHG 453

Query: 415 GTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           G +  +++  A A  W    ++R +++  G+ K  GCS I VN
Sbjct: 454 GRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVN 496



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/255 (34%), Positives = 128/255 (50%), Gaps = 35/255 (13%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML     +N YTF   LKACS     ++  +IHAH+I+ G   +I+  NSLL+ Y    D
Sbjct: 109 MLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGD 168

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCG--------FH-------------------- 92
           I SA  +F+ V   D VSW ++I G +KCG        F+                    
Sbjct: 169 IKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGA 228

Query: 93  ---KEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
              KEA+++F  +    +K +   LVS L AC+ L     GK IHA+  ++  E + IL 
Sbjct: 229 GKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILG 288

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
             ++D Y +CG L     +F KM ++ V  WT MI GYA  G  +EA+  F +M+ T   
Sbjct: 289 CVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQ-TAGV 347

Query: 207 EPNEATLVNVLSACS 221
           EPN+ T   +L+ACS
Sbjct: 348 EPNQMTFTGILTACS 362


>gi|125585403|gb|EAZ26067.1| hypothetical protein OsJ_09920 [Oryza sativa Japonica Group]
          Length = 359

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 152/368 (41%), Positives = 216/368 (58%), Gaps = 22/368 (5%)

Query: 102 IDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNEN--NIILDNAILDFYIRCGSL 159
           +D  PNA TL SVL AC+ L    LG+AIH   LR    +  N I+DNA+LD Y +CG+L
Sbjct: 1   MDAAPNALTLASVLPACARLGDLALGRAIHGLWLRRGGGHGANPIVDNAVLDVYAKCGAL 60

Query: 160 ASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
           AS   LF +MP+R+V +WTTM+ G A  G  ++AV++F+ M    +A PN+AT+V+ L A
Sbjct: 61  ASARRLFDEMPERDVFAWTTMVWGLARNGSPQDAVAMFRGMLSDGDAAPNDATVVSALHA 120

Query: 220 CSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS 279
            ++  +L   K +HSY + +  L    +VGNA+I+ Y KCGD  +A +VF  L   D +S
Sbjct: 121 VATSGSLVSCKLLHSY-AVKQGLGGELVVGNALIDAYAKCGDAWLAFKVFVELPETDMVS 179

Query: 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMS 339
           W T+   +A++G  R+ALQLFSLM+   V PD   F+AL++AC H G VDQ L+   AM+
Sbjct: 180 WGTITRAMAVHGRCREALQLFSLMLRRGVRPDGAVFLALLTACCHAGRVDQALLFLGAMA 239

Query: 340 TVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI------- 392
            VY I P+ +HY CV+D  GRAG L+ A    R+MP  AE+    AL   C         
Sbjct: 240 RVYGISPRREHYTCVLDACGRAGQLDRAGEIFRQMP--AEYDAEKALGVYCSYAVSNGVA 297

Query: 393 ----HRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
                R  E+F      L  +     GT+A++S + A A RWED   +R+ +    ++K+
Sbjct: 298 GVAGERLPELF------LDGEVDAGGGTYAVVSKSLADAGRWEDACAVRERMAERRIEKE 351

Query: 449 TGCSWIEV 456
             C+WIEV
Sbjct: 352 AACTWIEV 359



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 136/276 (49%), Gaps = 13/276 (4%)

Query: 6   SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLH--DIFIQNSLLHFYVTVKDIFS 63
           ++ N  T    L AC+          IH   +  G  H  +  + N++L  Y     + S
Sbjct: 3   AAPNALTLASVLPACARLGDLALGRAIHGLWLRRGGGHGANPIVDNAVLDVYAKCGALAS 62

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACS 119
           A ++F+ +   DV +WTT++ GL++ G  ++A+ MF G+    D  PN  T+VS L A +
Sbjct: 63  ARRLFDEMPERDVFAWTTMVWGLARNGSPQDAVAMFRGMLSDGDAAPNDATVVSALHAVA 122

Query: 120 ---SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
              SLVS KL   +H+++++      +++ NA++D Y +CG       +FV++P+ ++VS
Sbjct: 123 TSGSLVSCKL---LHSYAVKQGLGGELVVGNALIDAYAKCGDAWLAFKVFVELPETDMVS 179

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           W T+    A  G C+EA+ +F  M + +   P+ A  + +L+AC     +         +
Sbjct: 180 WGTITRAMAVHGRCREALQLFSLMLR-RGVRPDGAVFLALLTACCHAGRVDQALLFLGAM 238

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 272
           +  Y +S        V++   + G +  A ++F  +
Sbjct: 239 ARVYGISPRREHYTCVLDACGRAGQLDRAGEIFRQM 274


>gi|357142899|ref|XP_003572730.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Brachypodium distachyon]
          Length = 497

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 152/444 (34%), Positives = 240/444 (54%), Gaps = 39/444 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +H + + +L +C+    H  A  +H+  +  GH  D++I N+ +  Y T  D+ SA ++F
Sbjct: 75  DHLSISFSLHSCTRLPCHPIASLLHSFAVRLGHAGDVYIVNAAVSAYFTAADVASAERLF 134

Query: 69  N--SVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKL 126
           +  S    DVV+WTT+++G ++ G  + A   F   D  P                    
Sbjct: 135 SDTSKDVADVVTWTTMVAGHARAGDVERARWFF---DAMP-------------------- 171

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
                        E N++  NA+L  Y   G L+    LF  M  RN  +W++M+ G  +
Sbjct: 172 -------------ERNVVSWNAMLGAYASAGMLSEARKLFDGMHSRNAATWSSMVTGLVQ 218

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
              C+EA+ VF +M   +   PNE+ LV+V+SAC+ + +L  G +VH+Y+      S+S 
Sbjct: 219 SDHCEEALRVFSDM-VARGVVPNESILVSVISACAQLRSLEHGVWVHAYVKRELHGSMSV 277

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
           ++  A+++MY KCG +  AI+VF  +  ++  SW+++I+GLAMNG   QAL LF  M + 
Sbjct: 278 ILATAIVDMYGKCGCIHNAIRVFAAMPVRNIYSWNSMITGLAMNGREMQALSLFWKMQMA 337

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
            V P+D+TFI L+ ACSH GLVD+G  LF  M   + I P  +HY  +VD+ GRAGL++E
Sbjct: 338 GVQPNDITFIGLLGACSHSGLVDEGRWLFNRMVNDFGIQPVPEHYGLMVDLLGRAGLVKE 397

Query: 367 AEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAG 426
           A  F++ MP+E    +WGAL  AC IH   E+ + I + L+  +      + L+SN +  
Sbjct: 398 AVDFVKNMPVEPHPGLWGALAGACNIHGEVELGEEIAKKLIELEPRHGSRYILLSNIYGT 457

Query: 427 ADRWEDTNKIRDEIRRMGLKKKTG 450
           + RWED   +R  I+   + K TG
Sbjct: 458 SSRWEDMATVRRLIKERKVSKGTG 481


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 143/456 (31%), Positives = 247/456 (54%), Gaps = 10/456 (2%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +TF+  LKA    H      ++HA  +  G   D  + N +L FY     +     +F+ 
Sbjct: 251 FTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDE 310

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLVSHK 125
           +   D VS+  +IS  S+   ++ ++  F      G D +       ++LS  ++L S +
Sbjct: 311 MPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRR--NFPFATMLSIAANLSSLQ 368

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           +G+ +H  +L    ++ + + N+++D Y +C        +F  +P+R  VSWT +I GY 
Sbjct: 369 MGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYV 428

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           ++G     + +F +M +      +++T   VL A +S ++L  GK +H++I    +L  +
Sbjct: 429 QKGLHGAGLKLFTKM-RGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLE-N 486

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
              G+ +++MY KCG +  A+QVF  +  ++ +SW+ +IS  A NG G  A+  F+ MI 
Sbjct: 487 VFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIE 546

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
           + + PD V+ + +++ACSH G V+QG   F+AMS +Y I P+ +HYAC++D+ GR G   
Sbjct: 547 SGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFA 606

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVN-KKGVSVGTFALMSNTF 424
           EAE  + EMP E +  +W ++LNACRIH+N  + +R  + L + +K      +  MSN +
Sbjct: 607 EAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIY 666

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           A A  WE    ++  +R  G+KK    SW+EVN  I
Sbjct: 667 AAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKI 702



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 109/388 (28%), Positives = 185/388 (47%), Gaps = 13/388 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIF--IQNSLLHFYVTVKDIFSAHQ 66
           +H TFT  L  C+ A P     ++HA  ++ G   + F  + N LL  Y  V+ +  A  
Sbjct: 146 DHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACV 205

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVS 123
           +F  +   D V++ T+I+G  K G + E+I +F  +     +P+  T   VL A   L  
Sbjct: 206 LFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHD 265

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
             LG+ +HA S+      +  + N ILDFY +   +     LF +MP+ + VS+  +I  
Sbjct: 266 FALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISS 325

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           Y++    + ++  F+EM+       N      +LS  +++S+L  G+ +H         S
Sbjct: 326 YSQADQYEASLHFFREMQCMGFDRRN-FPFATMLSIAANLSSLQMGRQLHCQALLATADS 384

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           + + VGN++++MY KC     A  +F  L  +  +SW+ +ISG    G     L+LF+ M
Sbjct: 385 ILH-VGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKM 443

Query: 304 IINAVFPDDVTFIALISACSHGG--LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
             + +  D  TF  ++ A +     L+ + L  F   S   E V      + +VDMY + 
Sbjct: 444 RGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSG---SGLVDMYAKC 500

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNA 389
           G +++A     EMP     S W AL++A
Sbjct: 501 GSIKDAVQVFEEMPDRNAVS-WNALISA 527



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 109/242 (45%), Gaps = 5/242 (2%)

Query: 137 NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSV 196
            +   N +  N ++  +++ G ++S   LF  MP R VV+WT ++G YA      EA  +
Sbjct: 73  EMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKL 132

Query: 197 FQEMEKTKEAE-PNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSNLVGNAVIN 254
           F++M ++     P+  T   +L  C+     +    VH++ +   +D +    V N ++ 
Sbjct: 133 FRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLK 192

Query: 255 MYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVT 314
            Y +   + +A  +F  +  KD ++++T+I+G   +G   +++ LF  M  +   P D T
Sbjct: 193 SYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFT 252

Query: 315 FIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIRE 373
           F  ++ A    GL D  L     A+S              ++D Y +   + E      E
Sbjct: 253 FSGVLKAVV--GLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDE 310

Query: 374 MP 375
           MP
Sbjct: 311 MP 312


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 145/456 (31%), Positives = 252/456 (55%), Gaps = 6/456 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L AC      +   E+H +   +   H + + N+ +  Y     + SA ++F
Sbjct: 350 NEVTILNVLPACLDKLQLRSLKELHGYSFRHCFQH-VELSNAFILAYAKCGALNSAEKVF 408

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHK 125
           + +    V SW  +I G ++ G  ++A+ +   +     +P+  T+ S+L AC+ L S +
Sbjct: 409 HGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQ 468

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK IH + LRN  E +  +  ++L  YI CG  +S   LF +M  +N+VSW  MI GY+
Sbjct: 469 YGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYS 528

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G   E++++F++   ++  + +E  +V+V  ACS +SAL  GK  H Y+      +  
Sbjct: 529 QNGLPYESLALFRK-SLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQ-TED 586

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             VG ++I+MY K G +  + +VF+ L  K+  SW+ +I    ++G G++A++L+  M  
Sbjct: 587 AFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKK 646

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
               PD  T+I ++ AC H GLV++GL  FK M     I P+++HYAC++DM  RAG L+
Sbjct: 647 VGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLD 706

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           +A   + EMP EA+  +W +LL +CR     E+ +++ + L+  +      + L+SN +A
Sbjct: 707 DALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAENYVLLSNLYA 766

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           G  +W+   ++R  ++ +GL+K  GCSWIEV   ++
Sbjct: 767 GLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVY 802



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 102/321 (31%), Positives = 169/321 (52%), Gaps = 7/321 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +++TF   +KAC      +    IH  VI+ G + D+F+ N+L+  Y     +  A ++F
Sbjct: 145 DNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVF 204

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSH 124
           + +   ++VSW ++I   S+ GF +++ D+   +     + P+  T+V++L  C+     
Sbjct: 205 DFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEV 264

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
            +G  IH  +++      ++++NA++  Y +CG L      FVK   +NVVSW TMI  +
Sbjct: 265 DIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAF 324

Query: 185 AERGFCKEAVSVFQEME-KTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           +  G   EA ++ QEM+ + +E + NE T++NVL AC     L   K +H Y S R+   
Sbjct: 325 SLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGY-SFRHCFQ 383

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
              L  NA I  Y KCG +  A +VF+ +  K   SW+ +I G A NG  R+AL L   M
Sbjct: 384 HVEL-SNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQM 442

Query: 304 IINAVFPDDVTFIALISACSH 324
             +   PD  T  +L+ AC+H
Sbjct: 443 TYSGQQPDWFTISSLLLACAH 463



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 159/313 (50%), Gaps = 8/313 (2%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNS-LLHFYVTVKDIFSAHQIFNSVVFPD 75
           L+AC      +    +H  V +  H  + ++ N+ L+  Y        +  +F+++   +
Sbjct: 50  LQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKN 109

Query: 76  VVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIH 131
           ++ W  ++SG ++ G + + + +F  +    D +P+  T  SV+ AC  ++  +LG+ IH
Sbjct: 110 LIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIH 169

Query: 132 AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
              ++     ++ + NA++  Y +CG++     +F  MP+ N+VSW +MI  ++E GF +
Sbjct: 170 GMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSR 229

Query: 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNA 251
           ++  +  EM   +   P+  T+V +L  C+    +  G  +H  ++ +  LS   +V NA
Sbjct: 230 DSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHG-LAVKLGLSEEVMVNNA 288

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA--VF 309
           ++ MY KCG +  A   F     K+ +SW+T+IS  ++ G   +A  L   M I    + 
Sbjct: 289 MVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMK 348

Query: 310 PDDVTFIALISAC 322
            ++VT + ++ AC
Sbjct: 349 ANEVTILNVLPAC 361



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 91/194 (46%), Gaps = 9/194 (4%)

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           +L AC +   +  G+ +H ++S         ++   +I MY  CG    +  VF+ +  K
Sbjct: 49  LLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETK 108

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVF-PDDVTFIALISACSHGGLVDQGL-I 333
           + I W+ ++SG   NG     +++F  ++ +  F PD+ TF ++I AC  GG++D  L  
Sbjct: 109 NLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKAC--GGILDVRLGE 166

Query: 334 LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           +   M     +V  +     +V MYG+ G ++EA      MP E     W +++  C   
Sbjct: 167 VIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMP-ETNLVSWNSMI--CAFS 223

Query: 394 RNDEMFDRIRQDLV 407
            N   F R   DL+
Sbjct: 224 ENG--FSRDSFDLL 235


>gi|334185093|ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis thaliana]
 gi|218546759|sp|Q9MA95.2|PP214_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g05240
 gi|332640689|gb|AEE74210.1| mitochondrial editing factor 19 [Arabidopsis thaliana]
          Length = 565

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 158/469 (33%), Positives = 253/469 (53%), Gaps = 16/469 (3%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    S +++TF   LKACS     Q    +H  V++ G   ++++   LLH Y+   +
Sbjct: 98  MLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGE 157

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           +    ++F  +   +VV+W ++ISG        +AI+ F  +    VK N   +V +L A
Sbjct: 158 VNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVA 217

Query: 118 CSSLVSHKLGKAIHAHSLRNLNEN---------NIILDNAILDFYIRCGSLASCGYLFVK 168
           C        GK  H   L+ L  +         N+IL  +++D Y +CG L +  YLF  
Sbjct: 218 CGRCKDIVTGKWFHGF-LQGLGFDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDG 276

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           MP+R +VSW ++I GY++ G  +EA+ +F +M     A P++ T ++V+ A         
Sbjct: 277 MPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIA-PDKVTFLSVIRASMIQGCSQL 335

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
           G+ +H+Y+S    +  + +V  A++NMY K GD   A + F  L  KD I+W+ VI GLA
Sbjct: 336 GQSIHAYVSKTGFVKDAAIV-CALVNMYAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLA 394

Query: 289 MNGCGRQALQLFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 347
            +G G +AL +F  M       PD +T++ ++ ACSH GLV++G   F  M  ++ + P 
Sbjct: 395 SHGHGNEALSIFQRMQEKGNATPDGITYLGVLYACSHIGLVEEGQRYFAEMRDLHGLEPT 454

Query: 348 MQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLV 407
           ++HY C+VD+  RAG  EEAE  ++ MP++   ++WGALLN C IH N E+ DRIR  + 
Sbjct: 455 VEHYGCMVDILSRAGRFEEAERLVKTMPVKPNVNIWGALLNGCDIHENLELTDRIRSMVA 514

Query: 408 NKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
             + +  G + L+SN +A A RW D   IR+ ++   + K  G S +E 
Sbjct: 515 EPEELGSGIYVLLSNIYAKAGRWADVKLIRESMKSKRVDKVLGHSSVET 563



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 175/373 (46%), Gaps = 25/373 (6%)

Query: 25  PHQKALEIHAHVIEYGHLHDIFIQNS----------LLHFYVTVKDIFS---AHQIFNSV 71
           P    LE    ++E   LH + I++S          L+ F  T  +  +   A  +F S+
Sbjct: 8   PILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESI 67

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGK 128
             P V  W ++I G S      +A+  +  +  K   P+  T   VL ACS L   + G 
Sbjct: 68  DCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGS 127

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H   ++   E N+ +   +L  Y+ CG +     +F  +P+ NVV+W ++I G+    
Sbjct: 128 CVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNN 187

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS-TRYDLSVSNL 247
              +A+  F+EM+ +   + NE  +V++L AC     +  GK+ H ++    +D    + 
Sbjct: 188 RFSDAIEAFREMQ-SNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSK 246

Query: 248 VG------NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
           VG       ++I+MY KCGD+  A  +F+ +  +  +SW+++I+G + NG   +AL +F 
Sbjct: 247 VGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFL 306

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            M+   + PD VTF+++I A    G    G  +   +S     V        +V+MY + 
Sbjct: 307 DMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKT-GFVKDAAIVCALVNMYAKT 365

Query: 362 GLLEEAEAFIREM 374
           G  E A+    ++
Sbjct: 366 GDAESAKKAFEDL 378



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 131/300 (43%), Gaps = 24/300 (8%)

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCG 163
           +K +   ++S L  C SLV       +H   +++    N+I  + ++DF   C    +  
Sbjct: 2   MKKHYKPILSQLENCRSLVELN---QLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLS 58

Query: 164 Y---LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
           Y   +F  +   +V  W +MI GY+      +A+  +QEM + K   P+  T   VL AC
Sbjct: 59  YARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLR-KGYSPDYFTFPYVLKAC 117

Query: 221 SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
           S +  + FG  VH ++  +    V+  V   +++MY+ CG+V   ++VF  +   + ++W
Sbjct: 118 SGLRDIQFGSCVHGFV-VKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAW 176

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS-----------HGGLVD 329
            ++ISG   N     A++ F  M  N V  ++   + L+ AC            HG L  
Sbjct: 177 GSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQG 236

Query: 330 QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
            G   +      + ++        ++DMY + G L  A      MP E     W +++  
Sbjct: 237 LGFDPYFQSKVGFNVILATS----LIDMYAKCGDLRTARYLFDGMP-ERTLVSWNSIITG 291


>gi|242067895|ref|XP_002449224.1| hypothetical protein SORBIDRAFT_05g006590 [Sorghum bicolor]
 gi|241935067|gb|EES08212.1| hypothetical protein SORBIDRAFT_05g006590 [Sorghum bicolor]
          Length = 570

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 158/451 (35%), Positives = 243/451 (53%), Gaps = 7/451 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +HYT+   L AC+ A   +    +H   + +    D F++ +L+  Y    ++  A  +F
Sbjct: 120 DHYTYPIVLPACAAARQPRLGRAVHGDAVRFALDGDGFVRCTLIAMYFQEGEVADAELVF 179

Query: 69  NSV--VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVS 123
                    VVSWT +++G  +  F  EA+ +F  +    V PN  TL+S L        
Sbjct: 180 AESHGSSRTVVSWTAMVAGYVQNYFFGEALALFSTMVAEGVLPNEITLISFLPCLQGQEW 239

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
              G+ +H   +R+  + NI L NA++  Y +CGS+     LF  M  R++VSW TM+  
Sbjct: 240 LDAGEMVHGFVIRSGFDANIPLANALIAMYGKCGSIPMAEALFEGMAVRSLVSWNTMVAI 299

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           Y + G   EA+  F  M  T++   +  TLV+VLSAC    AL  GK+VH +  + + L 
Sbjct: 300 YEQHGDVVEAIKFFHRM-LTEKVGFDCVTLVSVLSACGRSGALETGKWVHEFARS-HGLD 357

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
               +GN +++MY KCG++  A +VF+ L  +  +SWS +IS  A +G   +AL+LF LM
Sbjct: 358 ADARIGNVLVDMYAKCGEIADARKVFDCLHVRGVVSWSAMISAYANHGDSEEALKLFCLM 417

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
               V P+  TF A++ AC H GLV++GL  F ++ + Y++ P ++HYAC+VDM GRAG 
Sbjct: 418 KSEGVRPNSFTFTAVLVACGHSGLVNEGLKHFNSILSDYQMSPTLEHYACIVDMLGRAGR 477

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           L EA   IR M +  +  VWGA L  C++H N E+ + + +DL       V  + LMSN 
Sbjct: 478 LVEAYEIIRGMSLCPDKCVWGAFLGGCKLHSNLELAEFVAKDLFQSGSNDVTFYVLMSNM 537

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           +  A   ED  +IR  ++ M LKK  G S +
Sbjct: 538 YFEAGMLEDAERIRRAMKEMELKKTAGHSAV 568



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 182/382 (47%), Gaps = 20/382 (5%)

Query: 30  LEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
           L IHA  I  G   ++    SL+         + A ++F++    D   W T++   +  
Sbjct: 33  LPIHARAIVLGVSANLAFATSLIAGAAPASLAY-ARRVFDAAPVRDAYMWNTLLRAHAHS 91

Query: 90  GFHK--------EAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNL 138
             H         +A+ ++  +    V P+  T   VL AC++    +LG+A+H  ++R  
Sbjct: 92  HSHSQSSHSHAVDALALYKRMRAAGVAPDHYTYPIVLPACAAARQPRLGRAVHGDAVRFA 151

Query: 139 NENNIILDNAILDFYIRCGSLASCGYLFVKM--PKRNVVSWTTMIGGYAERGFCKEAVSV 196
            + +  +   ++  Y + G +A    +F +     R VVSWT M+ GY +  F  EA+++
Sbjct: 152 LDGDGFVRCTLIAMYFQEGEVADAELVFAESHGSSRTVVSWTAMVAGYVQNYFFGEALAL 211

Query: 197 FQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSNLVGNAVINM 255
           F  M   +   PNE TL++ L        L  G+ VH + I + +D ++   + NA+I M
Sbjct: 212 FSTM-VAEGVLPNEITLISFLPCLQGQEWLDAGEMVHGFVIRSGFDANIP--LANALIAM 268

Query: 256 YVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTF 315
           Y KCG + +A  +F  +A +  +SW+T+++    +G   +A++ F  M+   V  D VT 
Sbjct: 269 YGKCGSIPMAEALFEGMAVRSLVSWNTMVAIYEQHGDVVEAIKFFHRMLTEKVGFDCVTL 328

Query: 316 IALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP 375
           ++++SAC   G ++ G  + +  +  + +    +    +VDMY + G + +A      + 
Sbjct: 329 VSVLSACGRSGALETGKWVHE-FARSHGLDADARIGNVLVDMYAKCGEIADARKVFDCLH 387

Query: 376 IEAEWSVWGALLNACRIHRNDE 397
           +    S W A+++A   H + E
Sbjct: 388 VRGVVS-WSAMISAYANHGDSE 408



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 88/193 (45%), Gaps = 15/193 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML+    ++  T    L AC  +   +    +H     +G   D  I N L+  Y    +
Sbjct: 316 MLTEKVGFDCVTLVSVLSACGRSGALETGKWVHEFARSHGLDADARIGNVLVDMYAKCGE 375

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           I  A ++F+ +    VVSW+ +IS  +  G  +EA+ +FC +    V+PN+ T  +VL A
Sbjct: 376 IADARKVFDCLHVRGVVSWSAMISAYANHGDSEEALKLFCLMKSEGVRPNSFTFTAVLVA 435

Query: 118 C--SSLVSHKLGKAIHAHSLRNLNENNIILDN--AILDFYIRCGSLASCGYLFVKM---P 170
           C  S LV+  L    H +S+ +  + +  L++   I+D   R G L     +   M   P
Sbjct: 436 CGHSGLVNEGLK---HFNSILSDYQMSPTLEHYACIVDMLGRAGRLVEAYEIIRGMSLCP 492

Query: 171 KRNVVSWTTMIGG 183
            + V  W   +GG
Sbjct: 493 DKCV--WGAFLGG 503


>gi|449522418|ref|XP_004168223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Cucumis sativus]
          Length = 743

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 150/453 (33%), Positives = 261/453 (57%), Gaps = 5/453 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           TF  AL A ++    +    +H  +++ G   D  ++++L+  Y+  + +  A+++F S 
Sbjct: 250 TFCSALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFKST 309

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              DVV WT +ISGL +     +A+ +F  +   +VKP+  TL S L+AC+ L    +G 
Sbjct: 310 TEKDVVMWTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGCCDIGA 369

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
           +IH + LR     +I   N+++  Y +C  L     +F KM ++++VSW  ++ G+A+ G
Sbjct: 370 SIHGYVLRQGIMLDIPAQNSLVTMYAKCNKLQQSCSIFNKMVEKDLVSWNAIVAGHAKNG 429

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
           +  + +  F EM K+    P+  T+ ++L AC S  AL  GK++H+++  R  L    + 
Sbjct: 430 YLSKGIFFFNEMRKS-FLRPDSITVTSLLQACGSAGALCQGKWIHNFV-LRSSLIPCIMT 487

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
             A+++MY KCG++  A + F+ +  +D ++WST+I G   NG G  AL+ +S  +   +
Sbjct: 488 ETALVDMYFKCGNLENAQKCFDCMLQRDLVAWSTLIVGYGFNGKGEIALRKYSEFLGTGM 547

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            P+ V FI+++SACSHGGL+ +GL ++++M+  + + P ++H ACVVD+  RAG ++EA 
Sbjct: 548 EPNHVIFISVLSACSHGGLISKGLSIYESMTKDFRMSPNLEHRACVVDLLSRAGKVDEAY 607

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
           +F + M  E    V G LL+ACR++   E+   I +D+   K V  G F  ++N++A   
Sbjct: 608 SFYKMMFKEPSIVVLGMLLDACRVNGRVELGKVIARDMFELKPVDPGNFVQLANSYASMS 667

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           RW+   K   ++R +GLKK  G S IEV+ + F
Sbjct: 668 RWDGVEKAWTQMRSLGLKKYPGWSSIEVHGTTF 700



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 118/429 (27%), Positives = 216/429 (50%), Gaps = 25/429 (5%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           YTF    KAC+  +     L +H  V+  G  HD +I +SL+ FY     I    ++F++
Sbjct: 50  YTFPSLFKACTNLNLFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDT 109

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLG 127
           ++  +VV WTTII   S+ G    A  MF  +    ++P + TL+S+L   S L    L 
Sbjct: 110 MLKRNVVPWTTIIGSYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLPGISKL---PLL 166

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
             +H   + +  E+++ L N++++ Y +CG +A    LF  +  R++VSW +++  Y++ 
Sbjct: 167 LCLHCLIILHGFESDLALSNSMVNMYGKCGRIADARRLFESIGCRDIVSWNSLLSAYSKI 226

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G  +E + + Q M K ++ +P++ T  + LSA +    L  GK VH  +  +  L++   
Sbjct: 227 GATEEILQLLQAM-KIEDIKPDKQTFCSALSASAIKGDLRLGKLVHGLM-LKDGLNIDQH 284

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V +A++ +Y++C  +  A +VF     KD + W+ +ISGL  N C  +AL +F  MI + 
Sbjct: 285 VESALVVLYLRCRCLDPAYKVFKSTTEKDVVMWTAMISGLVQNDCADKALGVFYQMIESN 344

Query: 308 VFPDDVTFIALISACSHGGLVD-----QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
           V P   T  + ++AC+  G  D      G +L + +  + +I  Q      +V MY +  
Sbjct: 345 VKPSTATLASGLAACAQLGCCDIGASIHGYVLRQGI--MLDIPAQNS----LVTMYAKCN 398

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNA----CRIHRNDEMFDRIRQDLVNKKGVSVGTFA 418
            L+++ +   +M +E +   W A++        + +    F+ +R+  +    ++V T  
Sbjct: 399 KLQQSCSIFNKM-VEKDLVSWNAIVAGHAKNGYLSKGIFFFNEMRKSFLRPDSITV-TSL 456

Query: 419 LMSNTFAGA 427
           L +   AGA
Sbjct: 457 LQACGSAGA 465



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 156/315 (49%), Gaps = 10/315 (3%)

Query: 78  SWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHS 134
           S+ +++S LS  G H + +  +  +     + +A T  S+  AC++L     G ++H   
Sbjct: 16  SFNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQSV 75

Query: 135 LRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAV 194
           + N   ++  + ++++ FY + G +     +F  M KRNVV WTT+IG Y+  G    A 
Sbjct: 76  VVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAF 135

Query: 195 SVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVIN 254
           S+F++M ++   +P   TL+++L   S +  L     +        DL++S    N+++N
Sbjct: 136 SMFKQMRESG-IQPTSVTLLSLLPGISKLPLLLCLHCLIILHGFESDLALS----NSMVN 190

Query: 255 MYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVT 314
           MY KCG +  A ++F  +  +D +SW++++S  +  G   + LQL   M I  + PD  T
Sbjct: 191 MYGKCGRIADARRLFESIGCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQT 250

Query: 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
           F + +SA +  G +  G ++   M      + Q    A VV +Y R   L+ A    +  
Sbjct: 251 FCSALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVV-LYLRCRCLDPAYKVFKS- 308

Query: 375 PIEAEWSVWGALLNA 389
             E +  +W A+++ 
Sbjct: 309 TTEKDVVMWTAMISG 323


>gi|222622042|gb|EEE56174.1| hypothetical protein OsJ_05117 [Oryza sativa Japonica Group]
          Length = 545

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 153/483 (31%), Positives = 256/483 (53%), Gaps = 44/483 (9%)

Query: 10  HYTFTQALKACSLAHPHQKALEIHAHVIEYG-HLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           H+  TQ    C      Q+   IHA  + +G H +   I   +   Y        A ++F
Sbjct: 24  HHLLTQ----CKTIRELQR---IHAQALTHGLHPNQQSISCKIFRSYAEFGRPADAGRLF 76

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHK 125
           + +  PD++S+T+++S   K   H +AI +F        +P+    V  LSA   L   +
Sbjct: 77  DEIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQR 136

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC--------------------GYL 165
           +G  +H    R   ++ +++ NA++D Y RCG                         GY+
Sbjct: 137 IGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYM 196

Query: 166 -----------FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
                      F +MP ++ VSWT +I G+ +     +A+ +F +M   +   PN  T+V
Sbjct: 197 KCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKM-LLEGHRPNHITIV 255

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
            VLSAC+ I AL  G+ +H Y  ++ + + + +V NA+++MY K G +  A  VF  +  
Sbjct: 256 GVLSACADIGALDLGRAIHGY-GSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEEVQM 314

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           KD  +W+T+IS   + G GR+A++LF  M+ + + P+ VTF++++SACSH GL+ +G  L
Sbjct: 315 KDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVSVLSACSHAGLIQEGREL 374

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F  M  VY I P+++HY C+VD+ GR GLLEEAEA I  M +E +  +W +LL+AC  H 
Sbjct: 375 FDKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRSLLSACLAHG 434

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           ND + +    +++ ++    G + L+ N +A ++RW++   +R ++    + KK GCSWI
Sbjct: 435 NDRLAEIAGMEIIKREPGDDGVYVLLWNMYALSNRWKEALDMRKQMLSRKIYKKPGCSWI 494

Query: 455 EVN 457
           EV+
Sbjct: 495 EVD 497



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 3/114 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           NH T    L AC+          IH +  +     +I + N+L+  Y     I SA  +F
Sbjct: 250 NHITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSVF 309

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 119
             V   D  +WTT+IS  +  G  ++A+++F  +    + PN+ T VSVLSACS
Sbjct: 310 EEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVSVLSACS 363


>gi|449442767|ref|XP_004139152.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Cucumis sativus]
          Length = 743

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 150/453 (33%), Positives = 261/453 (57%), Gaps = 5/453 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           TF  AL A ++    +    +H  +++ G   D  ++++L+  Y+  + +  A+++F S 
Sbjct: 250 TFCSALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFKST 309

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              DVV WT +ISGL +     +A+ +F  +   +VKP+  TL S L+AC+ L    +G 
Sbjct: 310 TEKDVVMWTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGCCDIGA 369

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
           +IH + LR     +I   N+++  Y +C  L     +F KM ++++VSW  ++ G+A+ G
Sbjct: 370 SIHGYVLRQGIMLDIPAQNSLVTMYAKCNKLQQSCSIFNKMVEKDLVSWNAIVAGHAKNG 429

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
           +  + +  F EM K+    P+  T+ ++L AC S  AL  GK++H+++  R  L    + 
Sbjct: 430 YLSKGIFFFNEMRKS-FLRPDSITVTSLLQACGSAGALCQGKWIHNFV-LRSSLIPCIMT 487

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
             A+++MY KCG++  A + F+ +  +D ++WST+I G   NG G  AL+ +S  +   +
Sbjct: 488 ETALVDMYFKCGNLENAQKCFDCMLQRDLVAWSTLIVGYGFNGKGEIALRKYSEFLGTGM 547

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            P+ V FI+++SACSHGGL+ +GL ++++M+  + + P ++H ACVVD+  RAG ++EA 
Sbjct: 548 EPNHVIFISVLSACSHGGLISKGLSIYESMTKDFRMSPNLEHRACVVDLLSRAGKVDEAY 607

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
           +F + M  E    V G LL+ACR++   E+   I +D+   K V  G F  ++N++A   
Sbjct: 608 SFYKMMFKEPSIVVLGMLLDACRVNGRVELGKVIARDMFELKPVDPGNFVQLANSYASMS 667

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           RW+   K   ++R +GLKK  G S IEV+ + F
Sbjct: 668 RWDGVEKAWTQMRSLGLKKYPGWSSIEVHGTTF 700



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 118/429 (27%), Positives = 216/429 (50%), Gaps = 25/429 (5%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           YTF    KAC+  +     L +H  V+  G  HD +I +SL+ FY     I    ++F++
Sbjct: 50  YTFPSLFKACTNLNLFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDT 109

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLG 127
           ++  +VV WTTII   S+ G    A  MF  +    ++P + TL+S+L   S L    L 
Sbjct: 110 MLKRNVVPWTTIIGSYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLPGISKL---PLL 166

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
             +H   + +  E+++ L N++++ Y +CG +A    LF  +  R++VSW +++  Y++ 
Sbjct: 167 LCLHCLIILHGFESDLALSNSMVNMYGKCGRIADARRLFQSIDCRDIVSWNSLLSAYSKI 226

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G  +E + + Q M K ++ +P++ T  + LSA +    L  GK VH  +  +  L++   
Sbjct: 227 GATEEILQLLQAM-KIEDIKPDKQTFCSALSASAIKGDLRLGKLVHGLM-LKDGLNIDQH 284

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V +A++ +Y++C  +  A +VF     KD + W+ +ISGL  N C  +AL +F  MI + 
Sbjct: 285 VESALVVLYLRCRCLDPAYKVFKSTTEKDVVMWTAMISGLVQNDCADKALGVFYQMIESN 344

Query: 308 VFPDDVTFIALISACSHGGLVD-----QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
           V P   T  + ++AC+  G  D      G +L + +  + +I  Q      +V MY +  
Sbjct: 345 VKPSTATLASGLAACAQLGCCDIGASIHGYVLRQGI--MLDIPAQNS----LVTMYAKCN 398

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNA----CRIHRNDEMFDRIRQDLVNKKGVSVGTFA 418
            L+++ +   +M +E +   W A++        + +    F+ +R+  +    ++V T  
Sbjct: 399 KLQQSCSIFNKM-VEKDLVSWNAIVAGHAKNGYLSKGIFFFNEMRKSFLRPDSITV-TSL 456

Query: 419 LMSNTFAGA 427
           L +   AGA
Sbjct: 457 LQACGSAGA 465



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 156/315 (49%), Gaps = 10/315 (3%)

Query: 78  SWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHS 134
           S+ +++S LS  G H + +  +  +     + +A T  S+  AC++L     G ++H   
Sbjct: 16  SFNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQSV 75

Query: 135 LRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAV 194
           + N   ++  + ++++ FY + G +     +F  M KRNVV WTT+IG Y+  G    A 
Sbjct: 76  VVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAF 135

Query: 195 SVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVIN 254
           S+F++M ++   +P   TL+++L   S +  L     +        DL++S    N+++N
Sbjct: 136 SMFKQMRESG-IQPTSVTLLSLLPGISKLPLLLCLHCLIILHGFESDLALS----NSMVN 190

Query: 255 MYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVT 314
           MY KCG +  A ++F  +  +D +SW++++S  +  G   + LQL   M I  + PD  T
Sbjct: 191 MYGKCGRIADARRLFQSIDCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQT 250

Query: 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
           F + +SA +  G +  G ++   M      + Q    A VV +Y R   L+ A    +  
Sbjct: 251 FCSALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVV-LYLRCRCLDPAYKVFKS- 308

Query: 375 PIEAEWSVWGALLNA 389
             E +  +W A+++ 
Sbjct: 309 TTEKDVVMWTAMISG 323


>gi|147863814|emb|CAN79347.1| hypothetical protein VITISV_019894 [Vitis vinifera]
          Length = 667

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 148/458 (32%), Positives = 261/458 (56%), Gaps = 17/458 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +++T+   +  C L    Q    +HA +++     D FI  +LL  Y  V +I  A ++F
Sbjct: 146 DNFTYAIIIPCCDLGFGQQ----VHADIVKVCSDLDAFIGTNLLRMYAEVGEIGDARKVF 201

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           + +    +V+W  +IS  SK G   ++I +F  +    +  +  T   VL+  ++    +
Sbjct: 202 DGMPSRGLVTWNAMISCYSKYGRGDKSIGLFRQLXREGISADEYTYAIVLNEFAA--RWQ 259

Query: 126 LGKAIHAHSL---RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
           + +A+  HSL   R    +    +NA+++ Y +CG +AS   LF ++P ++VVSWT +I 
Sbjct: 260 VFEAMQVHSLIIERGFCSDRFT-NNALVNLYSKCGYVASASRLFEEIPDQDVVSWTVIIV 318

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
           G+ + G  +EA+ +F +M+   + EPN  T   +L AC+  +A   G++ H  +     L
Sbjct: 319 GFLQSGHMEEAMWLFYQMQ-LGDIEPNSFTFGGLLGACADANAFQKGRHFHGLVLKFGLL 377

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
               +VG+AV++MY KCG++G A++ F  +  +D  SW+ +I G A NG G +AL+L++ 
Sbjct: 378 GADVVVGSAVVDMYSKCGEMGDALRAFQEMPERDIASWNGIICGYAQNGAGMKALKLYNE 437

Query: 303 MII---NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
           M++   + + P++VTF+ ++ ACSH GL+ +G   FK M   + I P  +HY C+VD+ G
Sbjct: 438 MVLLGPSGIAPNEVTFVGVLCACSHNGLLKEGYSYFKEMVDKHLIKPTAEHYTCMVDLLG 497

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFAL 419
           RAGLL+EAEA I  +PI+ +  +WGALL AC++H + +M  R  + L   +  +   + L
Sbjct: 498 RAGLLQEAEALILALPIKPDNVMWGALLGACKLHGDVQMTRRTAEHLYTNEPRNSSNYVL 557

Query: 420 MSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           ++N++     W +  +IR+ +   G++K  GCSW+E+ 
Sbjct: 558 LANSYTDIGEWGEAVEIREVMEARGVEKTAGCSWVEIG 595



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/399 (25%), Positives = 184/399 (46%), Gaps = 40/399 (10%)

Query: 23  AHPHQ-KALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTT 81
           +H H  KA  +HA +++ G +  ++  N LL  Y+  + +  AH++ + +  P VVS+ T
Sbjct: 27  SHGHMYKAPVLHASLVKNGLIAHVYQCNILLQAYINSQALSDAHKLLHFMPQPSVVSYNT 86

Query: 82  IISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKA------------ 129
           I+SG  K G   EAI +F G   K + ++   VLS C  + +HKLG+             
Sbjct: 87  ILSGYFKFGLVSEAIKLFDGTS-KRDCHSWNIVLSGC--VKNHKLGEGLTHFMKMRCSSV 143

Query: 130 ---------------------IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168
                                +HA  ++  ++ +  +   +L  Y   G +     +F  
Sbjct: 144 RPDNFTYAIIIPCCDLGFGQQVHADIVKVCSDLDAFIGTNLLRMYAEVGEIGDARKVFDG 203

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           MP R +V+W  MI  Y++ G   +++ +F+++ + +    +E T   VL+  ++   +  
Sbjct: 204 MPSRGLVTWNAMISCYSKYGRGDKSIGLFRQLXR-EGISADEYTYAIVLNEFAARWQVFE 262

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
              VHS I  R          NA++N+Y KCG V  A ++F  +  +D +SW+ +I G  
Sbjct: 263 AMQVHSLIIER-GFCSDRFTNNALVNLYSKCGYVASASRLFEEIPDQDVVSWTVIIVGFL 321

Query: 289 MNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQM 348
            +G   +A+ LF  M +  + P+  TF  L+ AC+      +G      +     +   +
Sbjct: 322 QSGHMEEAMWLFYQMQLGDIEPNSFTFGGLLGACADANAFQKGRHFHGLVLKFGLLGADV 381

Query: 349 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
              + VVDMY + G + +A    +EMP E + + W  ++
Sbjct: 382 VVGSAVVDMYSKCGEMGDALRAFQEMP-ERDIASWNGII 419



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 142/295 (48%), Gaps = 13/295 (4%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S + YT+   L   +      +A+++H+ +IE G   D F  N+L++ Y     + SA +
Sbjct: 241 SADEYTYAIVLNEFAARWQVFEAMQVHSLIIERGFCSDRFTNNALVNLYSKCGYVASASR 300

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVS 123
           +F  +   DVVSWT II G  + G  +EA+ +F  +   D++PN+ T   +L AC+   +
Sbjct: 301 LFEEIPDQDVVSWTVIIVGFLQSGHMEEAMWLFYQMQLGDIEPNSFTFGGLLGACADANA 360

Query: 124 HKLGKAIHAHSLR-NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
            + G+  H   L+  L   ++++ +A++D Y +CG +      F +MP+R++ SW  +I 
Sbjct: 361 FQKGRHFHGLVLKFGLLGADVVVGSAVVDMYSKCGEMGDALRAFQEMPERDIASWNGIIC 420

Query: 183 GYAERGFCKEAVSVFQEMEKTKEA--EPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           GYA+ G   +A+ ++ EM     +   PNE T V VL ACS    L  G   +SY     
Sbjct: 421 GYAQNGAGMKALKLYNEMVLLGPSGIAPNEVTFVGVLCACSHNGLLKEG---YSYFKEMV 477

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQ----VFNMLAYKDKISWSTVISGLAMNG 291
           D  +          M    G  G+  +    +  +    D + W  ++    ++G
Sbjct: 478 DKHLIKPTAEHYTCMVDLLGRAGLLQEAEALILALPIKPDNVMWGALLGACKLHG 532



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 13/185 (7%)

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
           N +++ Y K G V  AI++F+  + +D  SW+ V+SG   N    + L  F  M  ++V 
Sbjct: 85  NTILSGYFKFGLVSEAIKLFDGTSKRDCHSWNIVLSGCVKNHKLGEGLTHFMKMRCSSVR 144

Query: 310 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEA 369
           PD+ T+  +I  C  G        + K  S +   +        ++ MY   G + +A  
Sbjct: 145 PDNFTYAIIIPCCDLGFGQQVHADIVKVCSDLDAFIGTN-----LLRMYAEVGEIGDARK 199

Query: 370 FIREMPIEAEWSVWGALLNA-CRIHRNDEMFDRIRQDLVNKKGVSVG--TFALMSNTFAG 426
               MP       W A+++   +  R D+     RQ  + ++G+S    T+A++ N FA 
Sbjct: 200 VFDGMPSRG-LVTWNAMISCYSKYGRGDKSIGLFRQ--LXREGISADEYTYAIVLNEFAA 256

Query: 427 ADRWE 431
             RW+
Sbjct: 257 --RWQ 259


>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 147/440 (33%), Positives = 257/440 (58%), Gaps = 7/440 (1%)

Query: 23  AHPHQKALE-IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTT 81
           A PH + L+  HAH++  G      +   LL        I    ++F SV  PD   + +
Sbjct: 19  AGPHLRRLQQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNS 78

Query: 82  IISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNL 138
           +I   SK GF  +A+  +  +    + P+  T  SV+ AC+ L    +G  +H+H   + 
Sbjct: 79  LIKASSKFGFSLDAVLFYRRMLLSRIVPSTYTFTSVIKACADLSLLCIGTLVHSHVFVSG 138

Query: 139 NENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQ 198
             ++  +  A++ FY +  +      +F +MP+R++V+W +MI GY + G   EAV VF 
Sbjct: 139 YASDSFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYEQNGLANEAVEVFN 198

Query: 199 EMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVK 258
           +M +++  EP+ AT V+VLSACS + +L FG ++H  I     ++++ ++  +++NM+ +
Sbjct: 199 KMRESR-VEPDSATFVSVLSACSQLGSLDFGCWLHDCI-VGSGITMNVVLATSLVNMFSR 256

Query: 259 CGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIAL 318
           CGDVG A  VF  +   + + W+ +ISG  M+G G +A+++F  M    V P+ VTF+A+
Sbjct: 257 CGDVGRARAVFYSMIEGNVVLWTAMISGYGMHGYGVEAMEVFHRMKARGVVPNSVTFVAV 316

Query: 319 ISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIE 377
           +SAC+H GL+D+G  +F +M   Y +VP ++H+ C+VDM+GR GLL EA  F++ +   E
Sbjct: 317 LSACAHAGLIDEGRSVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVKGLNSDE 376

Query: 378 AEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIR 437
              +VW A+L AC++H+N ++   + ++L+N +  + G + L+SN +A A R +    +R
Sbjct: 377 LVPAVWTAMLGACKMHKNFDLGVEVAENLINAEPENPGHYVLLSNMYALAGRMDRVESVR 436

Query: 438 DEIRRMGLKKKTGCSWIEVN 457
           + + + GLKK+ G S I+V+
Sbjct: 437 NVMIQRGLKKQVGYSTIDVD 456



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 143/285 (50%), Gaps = 6/285 (2%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           YTFT  +KAC+          +H+HV   G+  D F+Q +L+ FY        A ++F+ 
Sbjct: 109 YTFTSVIKACADLSLLCIGTLVHSHVFVSGYASDSFVQAALIAFYAKSCTPRVARKVFDE 168

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLG 127
           +    +V+W ++ISG  + G   EA+++F  +    V+P++ T VSVLSACS L S   G
Sbjct: 169 MPQRSIVAWNSMISGYEQNGLANEAVEVFNKMRESRVEPDSATFVSVLSACSQLGSLDFG 228

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
             +H   + +    N++L  ++++ + RCG +     +F  M + NVV WT MI GY   
Sbjct: 229 CWLHDCIVGSGITMNVVLATSLVNMFSRCGDVGRARAVFYSMIEGNVVLWTAMISGYGMH 288

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G+  EA+ VF  M K +   PN  T V VLSAC+    +  G+ V + +   Y +     
Sbjct: 289 GYGVEAMEVFHRM-KARGVVPNSVTFVAVLSACAHAGLIDEGRSVFASMKQEYGVVPGVE 347

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS--WSTVISGLAMN 290
               +++M+ + G +  A Q    L   + +   W+ ++    M+
Sbjct: 348 HHVCMVDMFGRGGLLNEAYQFVKGLNSDELVPAVWTAMLGACKMH 392


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 142/421 (33%), Positives = 242/421 (57%), Gaps = 7/421 (1%)

Query: 42  LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-- 99
             DI   NS+++ Y     +    ++F  +   +V+SWT++I GL + G  +EA+ +F  
Sbjct: 132 FRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQ 191

Query: 100 ---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRC 156
              CG++VKP ++T   V++AC++  +   G  IHAH  +     +  +  A++ FY  C
Sbjct: 192 MMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANC 251

Query: 157 GSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNV 216
             +     +F      NVV WT ++ GY      ++A+ VF EM + +   PN+++  + 
Sbjct: 252 KQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMR-EGVLPNQSSFTSA 310

Query: 217 LSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD 276
           L++C  + AL +G+ +H+  + +  L     VGN++I MY +CG++   + +F  ++ K+
Sbjct: 311 LNSCCGLEALDWGREIHT-AAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKN 369

Query: 277 KISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFK 336
            +SW++VI G A +GCG  AL  F+ M+ + V PD++TF  L+SACSH G+  +G  LFK
Sbjct: 370 IVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFK 429

Query: 337 AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND 396
             S       ++ HYAC+VD+ GR+G LEEAE  IR MP++A   VW  LL+AC +H   
Sbjct: 430 YFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKL 489

Query: 397 EMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           E+ +R  + +++ +      + L+SN +A A RW D ++IR E+++ G+ K+ G SWI +
Sbjct: 490 EVAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITI 549

Query: 457 N 457
            
Sbjct: 550 K 550



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 147/283 (51%), Gaps = 5/283 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T+   + AC+ A    + ++IHAHV + G+  D +I  +L+ FY   K +  + ++F+  
Sbjct: 205 TYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGK 264

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
           +  +VV WT +++G      H++A+ +F  +    V PN ++  S L++C  L +   G+
Sbjct: 265 LHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGR 324

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IH  +++   E ++ + N+++  Y RCG+L     +F ++ K+N+VSW ++I G A+ G
Sbjct: 325 EIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHG 384

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
               A++ F +M ++   EP+E T   +LSACS       G+ +  Y S      V    
Sbjct: 385 CGMWALAFFNQMVRSM-VEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDH 443

Query: 249 GNAVINMYVKCGDVGIAIQVF-NMLAYKDKISWSTVISGLAMN 290
              ++++  + G +  A ++  NM    + + W  ++S   M+
Sbjct: 444 YACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMH 486



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 144/290 (49%), Gaps = 9/290 (3%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID 103
           D+++   ++  Y        A Q+F  +   DVVSW ++I G   C     A  +F   D
Sbjct: 41  DVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCFDCADLTMARKLF---D 97

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSL-RNLNENNIILDNAILDFYIRCGSLASC 162
             P   ++VS  +  +  +  + GK   A  L   +   +I   N+++  Y   G +   
Sbjct: 98  EMPE-RSVVSWTTMINGFL--QFGKIEVAEGLFYKMPFRDIAAWNSMIYGYCCNGRVEDG 154

Query: 163 GYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK-EAEPNEATLVNVLSACS 221
             LF +MP RNV+SWT+MIGG  + G  +EA+ +F++M     E +P  +T   V++AC+
Sbjct: 155 LRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACA 214

Query: 222 SISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWS 281
           + SAL  G  +H+++  +   S    +  A+I  Y  C  +  +++VF+   + + + W+
Sbjct: 215 NASALYQGVQIHAHV-FKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWT 273

Query: 282 TVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
            +++G  +N     AL++F  M+   V P+  +F + +++C     +D G
Sbjct: 274 ALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWG 323



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 89/204 (43%), Gaps = 15/204 (7%)

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224
           +F K+   +V  +T MI GYA       A+ +F EM        N     +++  C   +
Sbjct: 33  VFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWN-----SMIKGCFDCA 87

Query: 225 ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVI 284
            L+  + +   +  R  +S + +     IN +++ G + +A  +F  + ++D  +W+++I
Sbjct: 88  DLTMARKLFDEMPERSVVSWTTM-----INGFLQFGKIEVAEGLFYKMPFRDIAAWNSMI 142

Query: 285 SGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV-YE 343
            G   NG     L+LF  M    V    +++ ++I      G  ++ L LF+ M     E
Sbjct: 143 YGYCCNGRVEDGLRLFQEMPCRNV----ISWTSMIGGLDQHGRSEEALGLFRQMMGCGVE 198

Query: 344 IVPQMQHYACVVDMYGRAGLLEEA 367
           + P    Y CV+     A  L + 
Sbjct: 199 VKPTSSTYCCVITACANASALYQG 222


>gi|222629009|gb|EEE61141.1| hypothetical protein OsJ_15084 [Oryza sativa Japonica Group]
          Length = 897

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 146/433 (33%), Positives = 261/433 (60%), Gaps = 15/433 (3%)

Query: 33  HAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFH 92
           HA ++       + I N+L+  Y   K +  A  +F  +   D  SW++++    K G  
Sbjct: 339 HAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLD 398

Query: 93  KEAIDMFCGIDVKP------NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
            + ++++  +  +       + N+L+S++S+CS L   +LG++ H +S+++L   N  + 
Sbjct: 399 LKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVA 458

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           NA++  Y RCG+      +F  +  ++VV+W+ +I  Y+  G  K+A+ ++ +M  T+  
Sbjct: 459 NALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQM-LTEGV 517

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYIST---RYDLSVSNLVGNAVINMYVKCGDVG 263
           +PN ATLV+V+S+C++++AL  G+ +HS++       DLS+      A+++MY+KCG +G
Sbjct: 518 KPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICT----ALVDMYMKCGQLG 573

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
           IA ++F+ +  +D ++W+ +ISG  M+G   QAL+LFS+M    V P+ +TF+A++SAC 
Sbjct: 574 IARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACC 633

Query: 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 383
           H GLVD+G  LF  M   Y + P ++HYAC+VD+ G++G L+EAE  +  MPIE +  +W
Sbjct: 634 HAGLVDKGRELFTRMEE-YSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIW 692

Query: 384 GALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443
           G LL AC++H N EM  R+ +        + G + LMSN++  A++W +  K+RD ++  
Sbjct: 693 GTLLGACKMHDNFEMGLRVAKKAFASDPENDGYYILMSNSYGSAEKWNEIEKLRDMMKNH 752

Query: 444 GLKKKTGCSWIEV 456
           G++K  G S I++
Sbjct: 753 GVEKSIGWSTIDI 765



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 199/392 (50%), Gaps = 12/392 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L+AC +         +H   ++ G  H   + +SL   Y        A  +F
Sbjct: 214 NSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILF 273

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   D+VSWT++I    + G  ++A+++F G++   ++P+   +  +L+   +    +
Sbjct: 274 PELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVR 333

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK  HA  +R    +++++ NA++  Y +C  +     +F  + +R+  SW++M+  Y 
Sbjct: 334 GGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYC 393

Query: 186 ERGFCKEAVSVFQEME--KTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           + G   + + +++EM+     E E +  +L++++S+CS +  L  G+  H Y S ++   
Sbjct: 394 KAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCY-SIKHLAG 452

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
            ++ V NA+I+MY +CG+  +A ++F M+  KD ++WS +IS  +  G  + AL L+  M
Sbjct: 453 ENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQM 512

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC--VVDMYGRA 361
           +   V P+  T +++IS+C++   ++ G ++    S V ++  +     C  +VDMY + 
Sbjct: 513 LTEGVKPNSATLVSVISSCANLAALEHGELIH---SHVKDVGLECDLSICTALVDMYMKC 569

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           G L  A      M +E +   W  +++   +H
Sbjct: 570 GQLGIARKMFDSM-LERDVVTWNVMISGYGMH 600



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 145/282 (51%), Gaps = 12/282 (4%)

Query: 32  IHAHVIEYGHLH---DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           +HA+ + +G L     + + +SL++ Y     +  A ++F+ +   DVV+WT +ISG   
Sbjct: 129 VHAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVC 188

Query: 89  CGFHKEAIDMFCGI-------DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNEN 141
            G   E +     +         +PN+ T+ S L AC  L    +G  +H   ++    +
Sbjct: 189 NGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGH 248

Query: 142 NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME 201
              + +++   Y +C S      LF ++P++++VSWT++IG Y   G  ++AV +F  ME
Sbjct: 249 CPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGME 308

Query: 202 KTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGD 261
           ++   +P+E  +  +L+   + + +  GK  H+ I  R +   S L+GNA+I+MY KC  
Sbjct: 309 ESG-LQPDEVVISCLLAGLGNDAKVRGGKTFHAAI-VRRNFGDSVLIGNALISMYAKCKQ 366

Query: 262 VGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           V IA  VF ML  +D  SWS+++      G   + L+L+  M
Sbjct: 367 VDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREM 408



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 19/202 (9%)

Query: 202 KTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL---SVSNLVGNAVINMYVK 258
           +   A P+  T   V SA + + AL  G  VH+Y S R+ L     S  V ++++ MY +
Sbjct: 99  RASGARPSRFTAPLVASAAAELGALPVGAAVHAY-SVRFGLLEGDGSVAVASSLVYMYAR 157

Query: 259 CGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA----VFPDDVT 314
           CG V  A+++F+ +  +D ++W+ VISG   NG   + L     M+ +A      P+  T
Sbjct: 158 CGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRT 217

Query: 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVV----DMYGRAGLLEEAEAF 370
             + + AC   G +  G  L       + +   + H   VV     MY +    E+A   
Sbjct: 218 MESGLEACGVLGELSVGTCLHG-----FGVKAGVGHCPSVVSSLFSMYTKCDSTEDARIL 272

Query: 371 IREMPIEAEWSVWGALLNA-CR 391
             E+P E +   W +L+ A CR
Sbjct: 273 FPELP-EKDLVSWTSLIGAYCR 293



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 4/186 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML+     N  T    + +C+     +    IH+HV + G   D+ I  +L+  Y+    
Sbjct: 512 MLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQ 571

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           +  A ++F+S++  DVV+W  +ISG    G   +A+ +F  ++   VKPN+ T +++LSA
Sbjct: 572 LGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSA 631

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVS 176
           C        G+ +         E N+     ++D   + G L     +   MP + +   
Sbjct: 632 CCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGI 691

Query: 177 WTTMIG 182
           W T++G
Sbjct: 692 WGTLLG 697


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 142/421 (33%), Positives = 242/421 (57%), Gaps = 7/421 (1%)

Query: 42  LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-- 99
             DI   NS+++ Y     +    ++F  +   +V+SWT++I GL + G  +EA+ +F  
Sbjct: 116 FRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQ 175

Query: 100 ---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRC 156
              CG++VKP ++T   V++AC++  +   G  IHAH  +     +  +  A++ FY  C
Sbjct: 176 MMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANC 235

Query: 157 GSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNV 216
             +     +F      NVV WT ++ GY      ++A+ VF EM + +   PN+++  + 
Sbjct: 236 KQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMR-EGVLPNQSSFTSA 294

Query: 217 LSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD 276
           L++C  + AL +G+ +H+  + +  L     VGN++I MY +CG++   + +F  ++ K+
Sbjct: 295 LNSCCGLEALDWGREIHT-AAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKN 353

Query: 277 KISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFK 336
            +SW++VI G A +GCG  AL  F+ M+ + V PD++TF  L+SACSH G+  +G  LFK
Sbjct: 354 IVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFK 413

Query: 337 AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND 396
             S       ++ HYAC+VD+ GR+G LEEAE  IR MP++A   VW  LL+AC +H   
Sbjct: 414 YFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKL 473

Query: 397 EMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           E+ +R  + +++ +      + L+SN +A A RW D ++IR E+++ G+ K+ G SWI +
Sbjct: 474 EVAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITI 533

Query: 457 N 457
            
Sbjct: 534 K 534



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 147/283 (51%), Gaps = 5/283 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T+   + AC+ A    + ++IHAHV + G+  D +I  +L+ FY   K +  + ++F+  
Sbjct: 189 TYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGK 248

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
           +  +VV WT +++G      H++A+ +F  +    V PN ++  S L++C  L +   G+
Sbjct: 249 LHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGR 308

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IH  +++   E ++ + N+++  Y RCG+L     +F ++ K+N+VSW ++I G A+ G
Sbjct: 309 EIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHG 368

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
               A++ F +M ++   EP+E T   +LSACS       G+ +  Y S      V    
Sbjct: 369 CGMWALAFFNQMVRSM-VEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDH 427

Query: 249 GNAVINMYVKCGDVGIAIQVF-NMLAYKDKISWSTVISGLAMN 290
              ++++  + G +  A ++  NM    + + W  ++S   M+
Sbjct: 428 YACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMH 470



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 144/290 (49%), Gaps = 9/290 (3%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID 103
           D+++   ++  Y        A Q+F  +   DVVSW ++I G   C     A  +F   D
Sbjct: 25  DVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCFDCADLTMARKLF---D 81

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSL-RNLNENNIILDNAILDFYIRCGSLASC 162
             P   ++VS  +  +  +  + GK   A  L   +   +I   N+++  Y   G +   
Sbjct: 82  EMPE-RSVVSWTTMINGFL--QFGKIEVAEGLFYKMPFRDIAAWNSMIYGYCCNGRVEDG 138

Query: 163 GYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK-EAEPNEATLVNVLSACS 221
             LF +MP RNV+SWT+MIGG  + G  +EA+ +F++M     E +P  +T   V++AC+
Sbjct: 139 LRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACA 198

Query: 222 SISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWS 281
           + SAL  G  +H+++  +   S    +  A+I  Y  C  +  +++VF+   + + + W+
Sbjct: 199 NASALYQGVQIHAHV-FKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWT 257

Query: 282 TVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
            +++G  +N     AL++F  M+   V P+  +F + +++C     +D G
Sbjct: 258 ALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWG 307



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 89/204 (43%), Gaps = 15/204 (7%)

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224
           +F K+   +V  +T MI GYA       A+ +F EM        N     +++  C   +
Sbjct: 17  VFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWN-----SMIKGCFDCA 71

Query: 225 ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVI 284
            L+  + +   +  R  +S + +     IN +++ G + +A  +F  + ++D  +W+++I
Sbjct: 72  DLTMARKLFDEMPERSVVSWTTM-----INGFLQFGKIEVAEGLFYKMPFRDIAAWNSMI 126

Query: 285 SGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV-YE 343
            G   NG     L+LF  M    V    +++ ++I      G  ++ L LF+ M     E
Sbjct: 127 YGYCCNGRVEDGLRLFQEMPCRNV----ISWTSMIGGLDQHGRSEEALGLFRQMMGCGVE 182

Query: 344 IVPQMQHYACVVDMYGRAGLLEEA 367
           + P    Y CV+     A  L + 
Sbjct: 183 VKPTSSTYCCVITACANASALYQG 206


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 152/469 (32%), Positives = 272/469 (57%), Gaps = 9/469 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           +LS   +   +T+   + +C+  +   + +++H H+I  G   D F+   L++ Y  +  
Sbjct: 69  VLSQEPNPTQHTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYSELDS 128

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSA 117
           I +A ++F+      +  W  +   L+  G+ +E +D++     I V  +  T   VL A
Sbjct: 129 IDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKA 188

Query: 118 C---SSLVSHKL-GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
           C    + VS  L G+ IH H LR+  E ++ +   +LD Y R G + +   +F +MP +N
Sbjct: 189 CVASEAFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKN 248

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEME-KTKEAEPNEATLVNVLSACSSISALSFGKYV 232
           VVSW+ MI  Y++ G   EA+ +F++M  + ++  PN  T+V+VL AC++++AL  GK +
Sbjct: 249 VVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLM 308

Query: 233 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
           H YI  R   S+  +V +A++ +Y +CG++ +  +VF  +  +D +SW+++IS   ++G 
Sbjct: 309 HGYILRRGLDSILPVV-SALVTVYARCGNLELGHRVFERMEKRDVVSWNSLISSYGIHGF 367

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
           GR+A+Q+F  MI   + P  ++F++++ ACSH GLV++G +LF++M   ++I P ++HYA
Sbjct: 368 GRKAIQIFKEMIDQGLSPSPISFVSVLGACSHAGLVEEGKVLFESMVRGHKIFPSVEHYA 427

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           C+VD+ GRA  L+EA   I +M IE    VWG+LL +CRIH N E+ +R    L   +  
Sbjct: 428 CMVDLLGRANRLDEAAKIIDDMRIEPGPKVWGSLLGSCRIHCNVELAERATSRLFELEPT 487

Query: 413 SVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           + G + L+++ +A A  W +  +++  +   GL+K  G S IE+   I+
Sbjct: 488 NAGNYVLLADIYAEAKMWNEVKRVKMLLEARGLQKVPGRSCIEIRRKIY 536


>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 150/457 (32%), Positives = 259/457 (56%), Gaps = 9/457 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N + FT  L A ++        +IH   ++ G L  + I N+L+  Y     +  + Q+F
Sbjct: 211 NEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVF 270

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
                 + ++W+ +I+G ++ G   +A+ +F  +    + P+  TLV VL+ACS   + +
Sbjct: 271 EMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVE 330

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSL--ASCGYLFVKMPKRNVVSWTTMIGG 183
            GK +H + L+   E+ + +  A++D Y + G    A  G+ +++ P  ++V WT+MI G
Sbjct: 331 EGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQP--DLVLWTSMIAG 388

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           Y + G  ++A+S++  M+  +   PNE T+ +VL ACS+++A   G+ +H+  + +Y L 
Sbjct: 389 YVQNGENEDALSLYCRMQ-MEGILPNELTMASVLKACSNLAAFDQGRQIHAR-TIKYGLG 446

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           +   +G+A+  MY KCG++     VF  +  +D ISW+ +ISGL+ NG G++AL+LF  M
Sbjct: 447 LEVTIGSALSTMYAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQNGYGKEALELFEEM 506

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
                 PDDVTF+ ++SACSH GLVD G + F+ M   + ++P+++HYAC+VD+  RAG 
Sbjct: 507 RQQDTKPDDVTFVNVLSACSHMGLVDSGWLYFRMMFDEFGLLPKVEHYACMVDVLSRAGK 566

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           L EA+ FI    I+    +W  LL ACR +RN E+     + L+         + L+S  
Sbjct: 567 LYEAKEFIESTTIDHGLCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSGI 626

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +    R ED  ++R  ++  G+ K+ GCSWIE+  ++
Sbjct: 627 YTALGRPEDVERVRSMMKVRGVSKEPGCSWIELKSNV 663



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 110/352 (31%), Positives = 191/352 (54%), Gaps = 13/352 (3%)

Query: 26  HQKALE----IHAHVIEYGHLHD-IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWT 80
           HQK+L+    +HA +I+       I++ NSL++FY     +  A  +F+ +   DV+SW 
Sbjct: 19  HQKSLQKGRALHAQIIKLASSSSCIYLANSLINFYAKCCHLPKAKLVFDRIHNKDVISWN 78

Query: 81  TIISGLSKCG-----FHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSL 135
            +I+G S+ G     F  E        ++ PNA+T   + +A S+L S   G+  HA ++
Sbjct: 79  CLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNLSSIFFGQQAHAVAI 138

Query: 136 RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVS 195
           +     ++ + +++L+ Y + G L     +F +MP+RN V+W TMI GYA +    EA  
Sbjct: 139 KMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFE 198

Query: 196 VFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINM 255
           VF+ M + +E + NE    +VLSA +    +  GK +H  ++ +  L V   + NA++ M
Sbjct: 199 VFELMRREEE-DVNEFAFTSVLSALAVPEFVDSGKQIHC-LAVKTGLLVFLSILNALVTM 256

Query: 256 YVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTF 315
           Y KCG +  ++QVF M   K+ I+WS +I+G A +G   +AL+LFS M    + P + T 
Sbjct: 257 YAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTL 316

Query: 316 IALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           + +++ACS    V++G  +   +  +     Q+     +VDMY ++G+ E+A
Sbjct: 317 VGVLNACSDACAVEEGKQVHNYLLKL-GFESQLYIMTALVDMYAKSGVTEDA 367



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 13/220 (5%)

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
           P   +  N L   +   +L  G+ +H+ I      S    + N++IN Y KC  +  A  
Sbjct: 5   PQNLSSFNSLVQFTHQKSLQKGRALHAQIIKLASSSSCIYLANSLINFYAKCCHLPKAKL 64

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQA--LQLFSLMIINAVFPDDVTFIALISACSHG 325
           VF+ +  KD ISW+ +I+G +  G    +  ++LF  M  + + P+  TF  + +A S+ 
Sbjct: 65  VFDRIHNKDVISWNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNL 124

Query: 326 GLV---DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
             +    Q   +   M+  Y++       + +++MY +AGLL EA      MP E     
Sbjct: 125 SSIFFGQQAHAVAIKMACFYDVFVG----SSLLNMYCKAGLLFEAREVFDRMP-ERNEVT 179

Query: 383 WGALLNACRIHR-NDEMFDRIRQDLVNKKGVSVGTFALMS 421
           W  +++   I R   E F+    +L+ ++   V  FA  S
Sbjct: 180 WATMISGYAIQRLAGEAFEVF--ELMRREEEDVNEFAFTS 217


>gi|115458828|ref|NP_001053014.1| Os04g0463800 [Oryza sativa Japonica Group]
 gi|38347057|emb|CAE04357.2| OSJNBa0060P14.4 [Oryza sativa Japonica Group]
 gi|113564585|dbj|BAF14928.1| Os04g0463800 [Oryza sativa Japonica Group]
          Length = 767

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 146/433 (33%), Positives = 261/433 (60%), Gaps = 15/433 (3%)

Query: 33  HAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFH 92
           HA ++       + I N+L+  Y   K +  A  +F  +   D  SW++++    K G  
Sbjct: 339 HAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLD 398

Query: 93  KEAIDMFCGIDVKP------NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
            + ++++  +  +       + N+L+S++S+CS L   +LG++ H +S+++L   N  + 
Sbjct: 399 LKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVA 458

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           NA++  Y RCG+      +F  +  ++VV+W+ +I  Y+  G  K+A+ ++ +M  T+  
Sbjct: 459 NALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQM-LTEGV 517

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYIST---RYDLSVSNLVGNAVINMYVKCGDVG 263
           +PN ATLV+V+S+C++++AL  G+ +HS++       DLS+      A+++MY+KCG +G
Sbjct: 518 KPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICT----ALVDMYMKCGQLG 573

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
           IA ++F+ +  +D ++W+ +ISG  M+G   QAL+LFS+M    V P+ +TF+A++SAC 
Sbjct: 574 IARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACC 633

Query: 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 383
           H GLVD+G  LF  M   Y + P ++HYAC+VD+ G++G L+EAE  +  MPIE +  +W
Sbjct: 634 HAGLVDKGRELFTRMEE-YSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIW 692

Query: 384 GALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443
           G LL AC++H N EM  R+ +        + G + LMSN++  A++W +  K+RD ++  
Sbjct: 693 GTLLGACKMHDNFEMGLRVAKKAFASDPENDGYYILMSNSYGSAEKWNEIEKLRDMMKNH 752

Query: 444 GLKKKTGCSWIEV 456
           G++K  G S I++
Sbjct: 753 GVEKSIGWSTIDI 765



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 199/392 (50%), Gaps = 12/392 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L+AC +         +H   ++ G  H   + +SL   Y        A  +F
Sbjct: 214 NSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILF 273

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   D+VSWT++I    + G  ++A+++F G++   ++P+   +  +L+   +    +
Sbjct: 274 PELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVR 333

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK  HA  +R    +++++ NA++  Y +C  +     +F  + +R+  SW++M+  Y 
Sbjct: 334 GGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYC 393

Query: 186 ERGFCKEAVSVFQEME--KTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           + G   + + +++EM+     E E +  +L++++S+CS +  L  G+  H Y S ++   
Sbjct: 394 KAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCY-SIKHLAG 452

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
            ++ V NA+I+MY +CG+  +A ++F M+  KD ++WS +IS  +  G  + AL L+  M
Sbjct: 453 ENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQM 512

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC--VVDMYGRA 361
           +   V P+  T +++IS+C++   ++ G ++    S V ++  +     C  +VDMY + 
Sbjct: 513 LTEGVKPNSATLVSVISSCANLAALEHGELIH---SHVKDVGLECDLSICTALVDMYMKC 569

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           G L  A      M +E +   W  +++   +H
Sbjct: 570 GQLGIARKMFDSM-LERDVVTWNVMISGYGMH 600



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 145/282 (51%), Gaps = 12/282 (4%)

Query: 32  IHAHVIEYGHLH---DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           +HA+ + +G L     + + +SL++ Y     +  A ++F+ +   DVV+WT +ISG   
Sbjct: 129 VHAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVC 188

Query: 89  CGFHKEAIDMFCGI-------DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNEN 141
            G   E +     +         +PN+ T+ S L AC  L    +G  +H   ++    +
Sbjct: 189 NGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGH 248

Query: 142 NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME 201
              + +++   Y +C S      LF ++P++++VSWT++IG Y   G  ++AV +F  ME
Sbjct: 249 CPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGME 308

Query: 202 KTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGD 261
           ++   +P+E  +  +L+   + + +  GK  H+ I  R +   S L+GNA+I+MY KC  
Sbjct: 309 ESG-LQPDEVVISCLLAGLGNDAKVRGGKTFHAAI-VRRNFGDSVLIGNALISMYAKCKQ 366

Query: 262 VGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           V IA  VF ML  +D  SWS+++      G   + L+L+  M
Sbjct: 367 VDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREM 408



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 19/202 (9%)

Query: 202 KTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL---SVSNLVGNAVINMYVK 258
           +   A P+  T   V SA + + AL  G  VH+Y S R+ L     S  V ++++ MY +
Sbjct: 99  RASGARPSRFTAPLVASAAAELGALPVGAAVHAY-SVRFGLLEGDGSVAVASSLVYMYAR 157

Query: 259 CGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA----VFPDDVT 314
           CG V  A+++F+ +  +D ++W+ VISG   NG   + L     M+ +A      P+  T
Sbjct: 158 CGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRT 217

Query: 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVV----DMYGRAGLLEEAEAF 370
             + + AC   G +  G  L       + +   + H   VV     MY +    E+A   
Sbjct: 218 MESGLEACGVLGELSVGTCLHG-----FGVKAGVGHCPSVVSSLFSMYTKCDSTEDARIL 272

Query: 371 IREMPIEAEWSVWGALLNA-CR 391
             E+P E +   W +L+ A CR
Sbjct: 273 FPELP-EKDLVSWTSLIGAYCR 293



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 4/186 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML+     N  T    + +C+     +    IH+HV + G   D+ I  +L+  Y+    
Sbjct: 512 MLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQ 571

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           +  A ++F+S++  DVV+W  +ISG    G   +A+ +F  ++   VKPN+ T +++LSA
Sbjct: 572 LGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSA 631

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVS 176
           C        G+ +         E N+     ++D   + G L     +   MP + +   
Sbjct: 632 CCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGI 691

Query: 177 WTTMIG 182
           W T++G
Sbjct: 692 WGTLLG 697


>gi|222631052|gb|EEE63184.1| hypothetical protein OsJ_17993 [Oryza sativa Japonica Group]
          Length = 746

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 151/427 (35%), Positives = 245/427 (57%), Gaps = 10/427 (2%)

Query: 40  GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF 99
           GH H +   +SL+  Y  + D  +A ++F+ +   DVVSW  ++    + G + E   MF
Sbjct: 185 GHDHTV---HSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMF 241

Query: 100 CGI----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIR 155
             +     V PN  T+  VL+AC       LG+ +   S     E + ++ +A+L  Y +
Sbjct: 242 RDMVKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEK 301

Query: 156 CGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVN 215
           CG +A    +F  +  +++V+W  MI GYA+ G   EA+S+F  M +     P++ TL  
Sbjct: 302 CGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSM-RIAGMRPDKITLAG 360

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           VLSACS++ AL  G  +  Y S R  L  +  VG A+++MY KCGD+  AI+VF  +  K
Sbjct: 361 VLSACSAVGALELGSELDGYASRR-GLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCK 419

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMI-INAVFPDDVTFIALISACSHGGLVDQGLIL 334
           +  SW+ +I GLA NG G +A+Q F LM     + PDD+TFI ++SAC H GLV  G   
Sbjct: 420 NVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRW 479

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F +++  ++I+P+++HY+C+VD+  R+G LEEA  FI ++P + +  + GALL ACR  +
Sbjct: 480 FNSLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGALLAACRKCK 539

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           N E+ +R+   ++  +  +   + + S  +A +DR +D+ K+R  +R  G+ K  GCSW+
Sbjct: 540 NVEIGERVINRIIQLEPTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVNKTPGCSWV 599

Query: 455 EVNPSIF 461
           EV+  + 
Sbjct: 600 EVSGKVL 606



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 161/311 (51%), Gaps = 7/311 (2%)

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR-NLNENNIILDNAILDFYIRCGSLASC 162
           ++P++ TL  +L A +   +  L +A HA   +  LN ++  + ++++  Y       + 
Sbjct: 148 IRPDSYTLPFLLLAAARYPAPSLARAAHALLGKIGLNGHDHTV-HSLITMYSYLDDPGAA 206

Query: 163 GYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS 222
             +F  +P R+VVSW  M+  Y   G   E   +F++M K     PN  T+  VL+AC  
Sbjct: 207 RKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNVVTVAVVLAACRD 266

Query: 223 ISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWST 282
              L  G++V  + S    + + +LVG+A++ MY KCG++  A +VF+ +  KD ++W+ 
Sbjct: 267 QGDLVLGRWVEEW-SWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNA 325

Query: 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 342
           +I+G A NG   +A+ LF  M I  + PD +T   ++SACS  G ++ G  L    ++  
Sbjct: 326 MITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELGSEL-DGYASRR 384

Query: 343 EIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDR 401
            +   +     +VDMY + G L++A    R+MP +   S W AL+     + R DE    
Sbjct: 385 GLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVAS-WNALICGLAFNGRGDEAIQH 443

Query: 402 IRQDLVNKKGV 412
             Q + N++G+
Sbjct: 444 F-QLMRNEEGL 453



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 4/111 (3%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L ACS     +   E+  +    G   ++++  +L+  Y    D+  A ++F  +
Sbjct: 357 TLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKM 416

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSAC 118
              +V SW  +I GL+  G   EAI  F  +     +KP+  T + VLSAC
Sbjct: 417 PCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSAC 467


>gi|218196522|gb|EEC78949.1| hypothetical protein OsI_19398 [Oryza sativa Indica Group]
          Length = 746

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 152/427 (35%), Positives = 246/427 (57%), Gaps = 10/427 (2%)

Query: 40  GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF 99
           GH H +   +SL+  Y  + D  +A ++F+ +   DVVSW  ++    + G + E   MF
Sbjct: 185 GHDHTV---HSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMF 241

Query: 100 CGI----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIR 155
             +     V PNA T+  VL+AC       LG+ +   S     E + ++ +A+L  Y +
Sbjct: 242 RDMVKEGTVAPNAVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEK 301

Query: 156 CGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVN 215
           CG +A    +F  +  +++V+W  MI GYA+ G   EA+S+F  M +     P++ TL  
Sbjct: 302 CGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSM-RIAGMRPDKITLAG 360

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           VLSACS++ AL  G  +  Y S R  L  +  VG A+++MY KCGD+  AI+VF  +  K
Sbjct: 361 VLSACSAVGALELGSELDGYASRR-GLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCK 419

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMI-INAVFPDDVTFIALISACSHGGLVDQGLIL 334
           +  SW+ +I GLA NG G +A+Q F LM     + PDD+TFI ++SAC H GLV  G   
Sbjct: 420 NVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRW 479

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F +++  ++I+P+++HY+C+VD+  R+G LEEA  FI ++P + +  + GALL ACR  +
Sbjct: 480 FNSLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGALLAACRKCK 539

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           N E+ +R+   ++  +  +   + + S  +A +DR +D+ K+R  +R  G+ K  GCSW+
Sbjct: 540 NVEIGERVINRIIQLEPTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVNKTPGCSWV 599

Query: 455 EVNPSIF 461
           EV+  + 
Sbjct: 600 EVSGKVL 606



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 161/311 (51%), Gaps = 7/311 (2%)

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR-NLNENNIILDNAILDFYIRCGSLASC 162
           ++P++ TL  +L A +   +  L +A HA   +  LN ++  + ++++  Y       + 
Sbjct: 148 IRPDSYTLPFLLLAAARYPAPSLARAAHALLGKIGLNGHDHTV-HSLITMYSYLDDPGAA 206

Query: 163 GYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS 222
             +F  +P R+VVSW  M+  Y   G   E   +F++M K     PN  T+  VL+AC  
Sbjct: 207 RKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNAVTVAVVLAACRD 266

Query: 223 ISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWST 282
              L  G++V  + S    + + +LVG+A++ MY KCG++  A +VF+ +  KD ++W+ 
Sbjct: 267 QGDLVLGRWVEEW-SWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNA 325

Query: 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 342
           +I+G A NG   +A+ LF  M I  + PD +T   ++SACS  G ++ G  L    ++  
Sbjct: 326 MITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELGSEL-DGYASRR 384

Query: 343 EIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDR 401
            +   +     +VDMY + G L++A    R+MP +   S W AL+     + R DE    
Sbjct: 385 GLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVAS-WNALICGLAFNGRGDEAIQH 443

Query: 402 IRQDLVNKKGV 412
             Q + N++G+
Sbjct: 444 F-QLMRNEEGL 453



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 4/111 (3%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L ACS     +   E+  +    G   ++++  +L+  Y    D+  A ++F  +
Sbjct: 357 TLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKM 416

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSAC 118
              +V SW  +I GL+  G   EAI  F  +     +KP+  T + VLSAC
Sbjct: 417 PCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSAC 467


>gi|115463111|ref|NP_001055155.1| Os05g0307200 [Oryza sativa Japonica Group]
 gi|113578706|dbj|BAF17069.1| Os05g0307200 [Oryza sativa Japonica Group]
          Length = 767

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 151/427 (35%), Positives = 245/427 (57%), Gaps = 10/427 (2%)

Query: 40  GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF 99
           GH H +   +SL+  Y  + D  +A ++F+ +   DVVSW  ++    + G + E   MF
Sbjct: 185 GHDHTV---HSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMF 241

Query: 100 CGI----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIR 155
             +     V PN  T+  VL+AC       LG+ +   S     E + ++ +A+L  Y +
Sbjct: 242 RDMVKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEK 301

Query: 156 CGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVN 215
           CG +A    +F  +  +++V+W  MI GYA+ G   EA+S+F  M +     P++ TL  
Sbjct: 302 CGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSM-RIAGMRPDKITLAG 360

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           VLSACS++ AL  G  +  Y S R  L  +  VG A+++MY KCGD+  AI+VF  +  K
Sbjct: 361 VLSACSAVGALELGSELDGYASRR-GLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCK 419

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMI-INAVFPDDVTFIALISACSHGGLVDQGLIL 334
           +  SW+ +I GLA NG G +A+Q F LM     + PDD+TFI ++SAC H GLV  G   
Sbjct: 420 NVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRW 479

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F +++  ++I+P+++HY+C+VD+  R+G LEEA  FI ++P + +  + GALL ACR  +
Sbjct: 480 FNSLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGALLAACRKCK 539

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           N E+ +R+   ++  +  +   + + S  +A +DR +D+ K+R  +R  G+ K  GCSW+
Sbjct: 540 NVEIGERVINRIIQLEPTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVNKTPGCSWV 599

Query: 455 EVNPSIF 461
           EV+  + 
Sbjct: 600 EVSGKVL 606



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 161/311 (51%), Gaps = 7/311 (2%)

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR-NLNENNIILDNAILDFYIRCGSLASC 162
           ++P++ TL  +L A +   +  L +A HA   +  LN ++  + ++++  Y       + 
Sbjct: 148 IRPDSYTLPFLLLAAARYPAPSLARAAHALLGKIGLNGHDHTV-HSLITMYSYLDDPGAA 206

Query: 163 GYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS 222
             +F  +P R+VVSW  M+  Y   G   E   +F++M K     PN  T+  VL+AC  
Sbjct: 207 RKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNVVTVAVVLAACRD 266

Query: 223 ISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWST 282
              L  G++V  + S    + + +LVG+A++ MY KCG++  A +VF+ +  KD ++W+ 
Sbjct: 267 QGDLVLGRWVEEW-SWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNA 325

Query: 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 342
           +I+G A NG   +A+ LF  M I  + PD +T   ++SACS  G ++ G  L    ++  
Sbjct: 326 MITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELGSEL-DGYASRR 384

Query: 343 EIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDR 401
            +   +     +VDMY + G L++A    R+MP +   S W AL+     + R DE    
Sbjct: 385 GLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVAS-WNALICGLAFNGRGDEAIQH 443

Query: 402 IRQDLVNKKGV 412
             Q + N++G+
Sbjct: 444 F-QLMRNEEGL 453



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 4/111 (3%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L ACS     +   E+  +    G   ++++  +L+  Y    D+  A ++F  +
Sbjct: 357 TLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKM 416

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSAC 118
              +V SW  +I GL+  G   EAI  F  +     +KP+  T + VLSAC
Sbjct: 417 PCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSAC 467


>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 163/521 (31%), Positives = 264/521 (50%), Gaps = 74/521 (14%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSL----------------- 51
           N  TFT  ++AC         + I   V++ G  H + + NSL                 
Sbjct: 183 NDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVF 242

Query: 52  --------------LHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAID 97
                         L  YV   D+  A +IF+ +   + +SW+ +I+  S+ G+ +EA+ 
Sbjct: 243 DRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALK 302

Query: 98  MFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
           +F  +     KPN +     LSA +SL +   G  IH H  +   + ++ + ++++D Y 
Sbjct: 303 LFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYC 362

Query: 155 RCGSLASCGYLF-------------------------------VKMPKRNVVSWTTMIGG 183
           +CG       +F                                 +P++N VSW T+I G
Sbjct: 363 KCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAG 422

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI---STRY 240
           Y E   C++ + VF  +  + +  PN++T  +VL AC+SI++L  G  VH  I     +Y
Sbjct: 423 YLENEQCEKVLEVFNTLLVSGQT-PNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQY 481

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
           D+     VG A+ +MY KCGD+G + QVF  +  K++ISW+ +I GLA +G   ++L LF
Sbjct: 482 DI----FVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILF 537

Query: 301 SLM-IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
             M   + V P+++  ++++ ACSH GLVD+GL  F +M  VY I P+ +HY CVVD+  
Sbjct: 538 EEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLS 597

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFAL 419
           R+G L EAE FIR +P + E + W ALL+ C+ ++++++ +R  + L      +   + L
Sbjct: 598 RSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQLAENNSAGYVL 657

Query: 420 MSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +SN +A A RW D + IR  +R  GLKK  GCSW+EV   +
Sbjct: 658 LSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEVRNQV 698



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 176/384 (45%), Gaps = 74/384 (19%)

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSH 124
           F    F +VVSWT  ISG  + G + EA+ +F  +    V+PN  T  SV+ AC  L   
Sbjct: 141 FERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDF 200

Query: 125 KLGKAI----------HAHSLRN---------------------LNENNIILDNAILDFY 153
            LG +I          H  S+ N                     + + +++   AILD Y
Sbjct: 201 GLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAY 260

Query: 154 IRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATL 213
           +  G L     +F +MP+RN +SW+ MI  Y++ G+ +EA+ +F +M + +  +PN +  
Sbjct: 261 VETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQ-EGFKPNISCF 319

Query: 214 VNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM-- 271
              LSA +S+ ALS G  +H ++ T+  +     +G+++I++Y KCG       VF++  
Sbjct: 320 ACTLSALASLRALSAGINIHGHV-TKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLIL 378

Query: 272 -----------------------------LAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
                                        +  K+ +SW T+I+G   N    + L++F+ 
Sbjct: 379 EKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNT 438

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY--ACVVDMYGR 360
           ++++   P+  TF +++ AC+    +D+G+        + ++  Q   +    + DMY +
Sbjct: 439 LLVSGQTPNKSTFSSVLCACASIASLDKGM---NVHGKIIKLGIQYDIFVGTALTDMYAK 495

Query: 361 AGLLEEAEAFIREMPIEAE--WSV 382
            G +  ++     MP + E  W+V
Sbjct: 496 CGDIGSSKQVFERMPEKNEISWTV 519



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/415 (20%), Positives = 170/415 (40%), Gaps = 69/415 (16%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           +HAH+I+ G     +I   LL  Y+  +      QI       D+V    +IS   + G 
Sbjct: 43  LHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQWGN 102

Query: 92  HKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILD 151
             +A  +F   D  P                                 E N +  +A++ 
Sbjct: 103 LVQARLLF---DEMP---------------------------------ERNEVSWSALIS 126

Query: 152 FYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEA 211
             ++ G +    + F + P +NVVSWT  I G+   G   EA+ +F  + ++    PN+ 
Sbjct: 127 GLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESG-VRPNDV 185

Query: 212 TLVNVLSACSSISALSFGKYVHSYI---STRYDLSVSN---------------------- 246
           T  +V+ AC  +     G  +   +      + LSVSN                      
Sbjct: 186 TFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRM 245

Query: 247 -----LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
                +   A+++ YV+ GD+  A ++F+ +  +++ISWS +I+  + +G   +AL+LFS
Sbjct: 246 EKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFS 305

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            M+     P+   F   +SA +    +  G+ +   ++ +  I   +   + ++D+Y + 
Sbjct: 306 KMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKI-GIDKDVFIGSSLIDLYCKC 364

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGT 416
           G  ++    + ++ +E     W +++    I+   E  + + + +  K  VS GT
Sbjct: 365 GKPDDGR-LVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGT 418



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 120/312 (38%), Gaps = 76/312 (24%)

Query: 108 ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFV 167
           A T VS+L   S+      G  +HAH ++    +   +   +L  Y+ C   A    +  
Sbjct: 21  AQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVK 80

Query: 168 KMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 227
           +    ++V    MI  Y + G   +A  +F EM      E NE +               
Sbjct: 81  EFDGSDLVVSNCMISAYVQWGNLVQARLLFDEM-----PERNEVSW-------------- 121

Query: 228 FGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGL 287
                                 +A+I+  +K G V  ++  F    +++ +SW+  ISG 
Sbjct: 122 ----------------------SALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGF 159

Query: 288 AMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL------ILFKA---- 337
             NG   +AL+LF  ++ + V P+DVTF +++ AC  G L D GL      ++ KA    
Sbjct: 160 VRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRAC--GELGDFGLGMSILGLVVKAGFEH 217

Query: 338 -----------------MSTVYEIVPQMQH-----YACVVDMYGRAGLLEEAEAFIREMP 375
                            +     +  +M+      +  ++D Y   G L EA     EMP
Sbjct: 218 YLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMP 277

Query: 376 IEAEWSVWGALL 387
              E S W A++
Sbjct: 278 ERNEIS-WSAMI 288


>gi|77554180|gb|ABA96976.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 780

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 155/428 (36%), Positives = 242/428 (56%), Gaps = 7/428 (1%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           E+H + I+     DIF+ NSL+  Y     +  A  IF  +   +VVSW  +I+ L + G
Sbjct: 342 EVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNG 401

Query: 91  FHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
              EA  +   +      PN+ TLV+VL AC+ + S K+GK IHA S+R     ++ + N
Sbjct: 402 AETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISN 461

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           A++D Y +CG L+    +F +  K +V S+ T+I GY++  +C E++ +F++M ++   +
Sbjct: 462 ALIDMYSKCGQLSLARNIFERSEKDDV-SYNTLILGYSQSPWCFESLLLFKQM-RSVGID 519

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
            +  + +  LSAC+++S    GK +H  +  R  LS    + N+++++Y K G +  A +
Sbjct: 520 YDAVSFMGALSACTNLSVFKHGKEIHCVLVRRL-LSGHPFLSNSLLDLYTKGGMLVTASK 578

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           +FN +  KD  SW+T+I G  M+G    A +LF LM  + +  D V++IA+++ACSHGGL
Sbjct: 579 IFNKITKKDVASWNTMILGYGMHGQIDIAFELFELMKGDGLDYDHVSYIAVLAACSHGGL 638

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           VD+G   F  M     I PQ  HYAC+VD+ GRAG L +    IR+MP  A   VWGALL
Sbjct: 639 VDKGKKYFSQM-VAQNIEPQQMHYACMVDLLGRAGQLSKCAEIIRDMPFPANSDVWGALL 697

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
            ACRIH N E+     + L   K    G + LM N +A   RW + NKIR  ++   ++K
Sbjct: 698 GACRIHGNIELAQWAAEHLFELKPEHSGYYTLMINMYAETGRWNEANKIRKLMKSRKVQK 757

Query: 448 KTGCSWIE 455
               SW++
Sbjct: 758 NPAYSWVQ 765



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/424 (27%), Positives = 215/424 (50%), Gaps = 20/424 (4%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+      N  +    + AC      +  L IHA  ++ G    + + N+L+  Y    D
Sbjct: 211 MMRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGD 270

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           + ++ Q+F+ ++  + VSW + I      GF+ + + MF  +   +V P + TL S+L A
Sbjct: 271 VEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPA 330

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
              L S  LG+ +H +S++   + +I + N+++D Y + GSL     +F +M  RNVVSW
Sbjct: 331 LVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSW 390

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
             MI    + G   EA  +  +M+K+ E  PN  TLVNVL AC+ +++L  GK +H++ S
Sbjct: 391 NAMIANLVQNGAETEAFRLVTDMQKSGEC-PNSITLVNVLPACARMASLKMGKQIHAW-S 448

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            R  L     + NA+I+MY KCG + +A  +F   + KD +S++T+I G + +    ++L
Sbjct: 449 IRRGLMFDLFISNALIDMYSKCGQLSLARNIFER-SEKDDVSYNTLILGYSQSPWCFESL 507

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQG----LILFKAMSTVYEIVPQMQHYAC 353
            LF  M    +  D V+F+  +SAC++  +   G     +L + + + +  +        
Sbjct: 508 LLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSN-----S 562

Query: 354 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQDLVNK 409
           ++D+Y + G+L  A     ++  + + + W  ++    +H       E+F+ ++ D ++ 
Sbjct: 563 LLDLYTKGGMLVTASKIFNKI-TKKDVASWNTMILGYGMHGQIDIAFELFELMKGDGLDY 621

Query: 410 KGVS 413
             VS
Sbjct: 622 DHVS 625



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 173/344 (50%), Gaps = 6/344 (1%)

Query: 28  KALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS 87
           K LE+HA  +  GHL D+F  N+L+ FY        A ++F+ +   DVVSW +++S   
Sbjct: 137 KGLELHASALRRGHLADVFTGNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFL 196

Query: 88  KCG-FH--KEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
             G FH  + A+          N  +LVSV+ AC +    K G +IHA +++      + 
Sbjct: 197 VNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVN 256

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           L NA++D Y + G + +   +F  M ++N VSW + IG +   GF  + + +F++M +  
Sbjct: 257 LANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSE-H 315

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
              P   TL ++L A   + +   G+ VH Y S +  + +   V N++++MY K G +  
Sbjct: 316 NVMPGSITLSSLLPALVELGSFDLGREVHGY-SIKRAMDLDIFVANSLVDMYAKFGSLEK 374

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
           A  +F  +  ++ +SW+ +I+ L  NG   +A +L + M  +   P+ +T + ++ AC+ 
Sbjct: 375 ASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACAR 434

Query: 325 GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
              +  G  +  A S    ++  +     ++DMY + G L  A 
Sbjct: 435 MASLKMGKQI-HAWSIRRGLMFDLFISNALIDMYSKCGQLSLAR 477



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 79/186 (42%), Gaps = 4/186 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M S    Y+  +F  AL AC+     +   EIH  ++        F+ NSLL  Y     
Sbjct: 513 MRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSNSLLDLYTKGGM 572

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSA 117
           + +A +IFN +   DV SW T+I G    G    A ++F    G  +  +  + ++VL+A
Sbjct: 573 LVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFELFELMKGDGLDYDHVSYIAVLAA 632

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVS 176
           CS       GK   +  +    E   +    ++D   R G L+ C  +   MP   N   
Sbjct: 633 CSHGGLVDKGKKYFSQMVAQNIEPQQMHYACMVDLLGRAGQLSKCAEIIRDMPFPANSDV 692

Query: 177 WTTMIG 182
           W  ++G
Sbjct: 693 WGALLG 698


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 149/418 (35%), Positives = 233/418 (55%), Gaps = 11/418 (2%)

Query: 42  LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG 101
           + D+   N+++  Y    +I  A Q+F+     DV +WT ++SG  +    +EA ++F  
Sbjct: 242 VRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELF-- 299

Query: 102 IDVKPNANTLVSVLSACSSLVSHKLGKAIH-AHSLRNLNE-NNIILDNAILDFYIRCGSL 159
            D  P  N +    S  + L  +  G+ +  A  L ++    N+   N ++  Y +CG +
Sbjct: 300 -DRMPERNEV----SWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKI 354

Query: 160 ASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
           +    LF KMPKR+ VSW  MI GY++ G   EA+ +F  ME+ +    N ++  + LS 
Sbjct: 355 SEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMER-EGGRLNRSSFSSALST 413

Query: 220 CSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS 279
           C+ + AL  GK +H  +  +        VGNA++ MY KCG +  A  +F  +A KD +S
Sbjct: 414 CADVVALELGKQLHGRL-VKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVS 472

Query: 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMS 339
           W+T+I+G + +G G +AL+ F  M    + PDD T +A++SACSH GLVD+G   F  M+
Sbjct: 473 WNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMT 532

Query: 340 TVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMF 399
             Y + P  QHYAC+VD+ GRAGLLEEA   ++ MP E + ++WG LL A R+H N E+ 
Sbjct: 533 QDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELA 592

Query: 400 DRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +     +   +  + G + L+SN +A + RW D  K+R  +R  G+KK  G SWIE+ 
Sbjct: 593 ETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQ 650



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 151/332 (45%), Gaps = 29/332 (8%)

Query: 75  DVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHS 134
           D+  W   IS   + G   EA+ +F  +  + ++ +  +++S        +L + +    
Sbjct: 58  DIKEWNVAISSYMRTGRCSEALRVFKRMP-RWSSVSYNAMISGYLRNGEFELARML---- 112

Query: 135 LRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAV 194
              + E +++  N ++  Y+R  +L     LF +MP+R+V SW T++ GYA+ G   +A 
Sbjct: 113 FDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDAR 172

Query: 195 SVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVIN 254
            VF  M      E N+ +   +LSA    S L     +     +R + ++  +  N ++ 
Sbjct: 173 RVFDRM-----PEKNDVSWNALLSAYVQNSKLEEACVL---FGSRENWAL--VSWNCLLG 222

Query: 255 MYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVT 314
            +VK   +  A Q F+ +  +D +SW+T+I+G A NG   +A QLF    ++ VF    T
Sbjct: 223 GFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVF----T 278

Query: 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
           + A++S      +V++   LF  M    E+      +  ++  Y +   +E A+     M
Sbjct: 279 WTAMVSGYIQNRMVEEARELFDRMPERNEV-----SWNAMLAGYVQGERVEMAKELFDVM 333

Query: 375 PIEAEWSVWGALLNA----CRIHRNDEMFDRI 402
           P     S W  ++       +I     +FD++
Sbjct: 334 PCR-NVSTWNTMITGYAQCGKISEAKNLFDKM 364



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 88/183 (48%), Gaps = 13/183 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  +F+ AL  C+     +   ++H  +++ G+    F+ N+LL  Y     I  A+ +F
Sbjct: 403 NRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLF 462

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   D+VSW T+I+G S+ GF +EA+  F  +    +KP+  T+V+VLSACS      
Sbjct: 463 KEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVD 522

Query: 126 LGKAIHAHSLRNLNENNIILDNA-----ILDFYIRCGSLASCGYLFVKMP-KRNVVSWTT 179
            G+         + ++  +  N+     ++D   R G L     L   MP + +   W T
Sbjct: 523 KGR----QYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGT 578

Query: 180 MIG 182
           ++G
Sbjct: 579 LLG 581


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 156/461 (33%), Positives = 261/461 (56%), Gaps = 13/461 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +++    AL +C+         + H   I+ G   D+ + N+LL  Y     +    ++F
Sbjct: 203 SNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVF 262

Query: 69  NSVVFPDVVSWTTIISGLSKCGFH-KEAIDMFCGI---DVKPNANTLVSVLSACSSLVSH 124
           + ++  D VSW T+I  L+  G    EAI++F  +      PN  T +++L+  SSL + 
Sbjct: 263 SWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTS 322

Query: 125 KLGKAIHAHSLR-NLNENNIILDNAILDFYIRCGSLASCGYLFVKM-PKRNVVSWTTMIG 182
           KL   IHA  L+ N+ ++N I +NA+L  Y + G + +C  +F +M  +R+ VSW +MI 
Sbjct: 323 KLSHQIHALILKYNVKDDNAI-ENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMIS 381

Query: 183 GYAERGF-CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
           GY      CK    V+  M++ +  +    T   VLSAC++++ L  G  VH+  + R  
Sbjct: 382 GYIHNELLCKAMDLVWLMMQRGQRLDC--FTFATVLSACATVATLECGMEVHA-CAIRAC 438

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
           L    ++G+A+++MY KCG +  A + FN++  ++  SW+++ISG A +G G  AL+LF+
Sbjct: 439 LESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFT 498

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            M ++   PD +TF+ ++SACSH GLVD+G   FK+M+ VY +VP+++HY+C+VD+ GRA
Sbjct: 499 RMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRA 558

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNAC--RIHRNDEMFDRIRQDLVNKKGVSVGTFAL 419
           G L++ E FI +MPI+    +W  +L AC     R  E+  R  + L N    +   + L
Sbjct: 559 GELDKIENFINKMPIKPNILIWRTVLGACCRGNGRKTELGRRAAEMLFNMDPQNAVNYVL 618

Query: 420 MSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +SN +A   +WED  + R  +R   +KK+ GCSW+ +   +
Sbjct: 619 LSNMYASGGKWEDMARTRRAMREAAVKKEAGCSWVTMKDGV 659



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/393 (28%), Positives = 203/393 (51%), Gaps = 13/393 (3%)

Query: 9   NHYTFTQALKACSLAHP-HQKALEIHAHVIEYGHLHD--IFIQNSLLHFYVTVKDIFSAH 65
           N + F  A++AC  +    +K  ++H + I  G L+D  + + N L++ Y    DI  A 
Sbjct: 100 NRFAFGSAIRACQESMLWRRKGRQVHGYAIRTG-LNDAKVAVGNGLINMYAKCGDIDHAR 158

Query: 66  QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLV 122
            +F  +V  D VSW ++I+GL +    ++A+  +  +    + P+   L+S LS+C+SL 
Sbjct: 159 SVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLG 218

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
              LG+  H   ++   + ++ + N +L  Y     LA C  +F  M +R+ VSW T+IG
Sbjct: 219 CILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIG 278

Query: 183 GYAERGF-CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
             A+ G    EA+ VF EM +   + PN  T +N+L+  SS+S       +H+ I  +Y+
Sbjct: 279 ALADSGASVSEAIEVFLEMMRAGWS-PNRVTFINLLATVSSLSTSKLSHQIHALI-LKYN 336

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFN-MLAYKDKISWSTVISGLAMNGCGRQALQLF 300
           +   N + NA++  Y K G++    ++F+ M   +D++SW+++ISG   N    +A+ L 
Sbjct: 337 VKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLV 396

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
            LM+      D  TF  ++SAC+    ++ G+ +  A +    +   +   + +VDMY +
Sbjct: 397 WLMMQRGQRLDCFTFATVLSACATVATLECGMEV-HACAIRACLESDVVIGSALVDMYSK 455

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
            G ++ A  F   MP+   +S W ++++    H
Sbjct: 456 CGRIDYASRFFNLMPVRNLYS-WNSMISGYARH 487



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 187/371 (50%), Gaps = 25/371 (6%)

Query: 33  HAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFH 92
           H +V+++G   D+F+ N+L++ YV + D  SA ++F+ +   + V+W  +ISG ++ G  
Sbjct: 23  HLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMP 82

Query: 93  KEAIDMFCGI-------DVKPNANTLVSVLSACS-SLVSHKLGKAIHAHSLRN-LNENNI 143
           ++A    CG+          PN     S + AC  S++  + G+ +H +++R  LN+  +
Sbjct: 83  EDA----CGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKV 138

Query: 144 ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
            + N +++ Y +CG +     +F  M  ++ VSW +MI G  +    ++AV  +  M KT
Sbjct: 139 AVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKT 198

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDV 262
               P+   L++ LS+C+S+  +  G+  H   I    D+ VS  V N ++ +Y +   +
Sbjct: 199 G-LMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVS--VSNTLLALYAETSRL 255

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCG-RQALQLFSLMIINAVFPDDVTFI---AL 318
               +VF+ +  +D++SW+TVI  LA +G    +A+++F  M+     P+ VTFI   A 
Sbjct: 256 AECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLAT 315

Query: 319 ISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEA 378
           +S+ S   L  Q      A+   Y +         ++  YG++G +E  E     M    
Sbjct: 316 VSSLSTSKLSHQ----IHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERR 371

Query: 379 EWSVWGALLNA 389
           +   W ++++ 
Sbjct: 372 DEVSWNSMISG 382



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 161/333 (48%), Gaps = 9/333 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+    S N  TF   L   S     + + +IHA +++Y    D  I+N+LL  Y    +
Sbjct: 297 MMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGE 356

Query: 61  IFSAHQIFNSVV-FPDVVSWTTIISGLSKCGFHKEAID---MFCGIDVKPNANTLVSVLS 116
           + +  +IF+ +    D VSW ++ISG        +A+D   +      + +  T  +VLS
Sbjct: 357 MENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLS 416

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
           AC+++ + + G  +HA ++R   E+++++ +A++D Y +CG +      F  MP RN+ S
Sbjct: 417 ACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYS 476

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           W +MI GYA  G    A+ +F  M+ + +  P+  T V VLSACS I  +  G      +
Sbjct: 477 WNSMISGYARHGHGDNALRLFTRMKLSGQL-PDHITFVGVLSACSHIGLVDEGFEYFKSM 535

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS-WSTVISGLAMNGCGRQ 295
           +  Y L       + ++++  + G++       N +  K  I  W TV+ G    G GR+
Sbjct: 536 TEVYGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVL-GACCRGNGRK 594

Query: 296 AL--QLFSLMIINAVFPDDVTFIALISACSHGG 326
               +  + M+ N    + V ++ L +  + GG
Sbjct: 595 TELGRRAAEMLFNMDPQNAVNYVLLSNMYASGG 627


>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
          Length = 708

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 150/462 (32%), Positives = 256/462 (55%), Gaps = 12/462 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML+     N +T +  +KACS     +     H  V+  G   +  I ++L+  +     
Sbjct: 211 MLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCA 270

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK----PNANTLVSVLS 116
           +  A Q+F+ ++ PD + WT+IIS L++  F  EA+  F  +       P+  T  +VL+
Sbjct: 271 LDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLT 330

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
           AC +L   K GK +HA  +      N++++++++D Y +CGS+     +F +MP +N VS
Sbjct: 331 ACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVS 390

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH-SY 235
           W+ ++GGY + G  K  + +F++MEK      +      +L  C+ ++A+  GK VH  Y
Sbjct: 391 WSALLGGYCQNGDFKSVIQIFRKMEKV-----DLYCFGTILRTCAGLAAVRQGKEVHCQY 445

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
           I  R       +V +A++++Y KCG +  A  +F+ +  ++ I+W+++I G A NG G +
Sbjct: 446 I--RKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEE 503

Query: 296 ALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVV 355
           AL++F+ M+   + PD ++FI ++ ACSH GLVD+G   F +M+  Y I   ++HY+C+V
Sbjct: 504 ALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMV 563

Query: 356 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVG 415
           D+ GRAGLLEEAE  I       + S+W ALL AC    N E+ +RI + ++  +     
Sbjct: 564 DLLGRAGLLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAERIAKRVMELEPDYHL 623

Query: 416 TFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           ++ L++N +    RW D  +IR  ++  G+ K  G SWIE  
Sbjct: 624 SYVLLANVYKAVGRWNDALRIRRLMKDRGVNKMPGKSWIETK 665



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/428 (27%), Positives = 211/428 (49%), Gaps = 26/428 (6%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV-KDIFSAHQIFNSV 71
           +   L+ C+        L+IHAHVI+ G   D F+ NSLL  Y  +  D     ++F+ +
Sbjct: 121 YASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGL 180

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGK 128
              DV+SWT++ISG  + G    ++++F       V+PNA TL +V+ ACS L   KLG+
Sbjct: 181 FVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGR 240

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
             H   L    ++N ++ +A++D + R  +L     LF ++ + + + WT++I       
Sbjct: 241 IFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRND 300

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
           F  EA+  F  M++     P+  T   VL+AC ++  L  GK VH+ + T      + +V
Sbjct: 301 FFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITT-GFCGNVVV 359

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            +++++MY KCG VG + ++F+ +  K+ +SWS ++ G   NG  +  +Q+F  M    +
Sbjct: 360 ESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEKVDL 419

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVY-------EIVPQMQHYACVVDMYGRA 361
           +     F  ++  C+    V QG    K +   Y       +++ +    + +VD+Y + 
Sbjct: 420 Y----CFGTILRTCAGLAAVRQG----KEVHCQYIRKGGWRDVIVE----SALVDLYAKC 467

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           G +E A+    +MP+      W +++     +   E   RI   +V K+G+     + + 
Sbjct: 468 GCIEYAQTIFDQMPVR-NLITWNSMIGGFAQNGRGEEALRIFNQMV-KEGIKPDYISFIG 525

Query: 422 NTFAGADR 429
             FA + R
Sbjct: 526 ILFACSHR 533



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 108/215 (50%), Gaps = 21/215 (9%)

Query: 200 MEKTKEAEPNEATLVNVLSA-----CSSISALSFGKYVHSYISTRYDLSVSNLVGNAVIN 254
           ++  K  +P E +   VL A     C+ + A + G  +H+++  +  L     VGN+++ 
Sbjct: 103 LQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHV-IKSGLEFDRFVGNSLLT 161

Query: 255 MYVKCG-DVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDV 313
           +Y K G D     +VF+ L  KD ISW+++ISG    G    +L+LF  M+   V P+  
Sbjct: 162 LYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAF 221

Query: 314 TFIALISACSH-----GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
           T  A+I ACS       G +  G++L +   + Y I       + ++DM+GR   L++A 
Sbjct: 222 TLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIA------SALIDMHGRNCALDDAR 275

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIR 403
               E+ +E +   W ++++A  + RND   + +R
Sbjct: 276 QLFDEL-LEPDAICWTSIISA--LTRNDFFDEALR 307


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 148/463 (31%), Positives = 252/463 (54%), Gaps = 38/463 (8%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKD--IFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           +IH  +++ G + D    + LL F  +     +  A  +F+ +  P+   W T+I G S 
Sbjct: 36  QIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSN 95

Query: 89  CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR--------- 136
               +EA+ ++  +    V  NA T   +L ACSS+ + +  + IHAH ++         
Sbjct: 96  SKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYT 155

Query: 137 ----------------------NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV 174
                                  +++ + +  N+++D Y +CG +     +F  MP+RN+
Sbjct: 156 TNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNI 215

Query: 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
           +SWT+MI G    G  KEA+++F  M+ T   + +   LV+ L AC+ +  L  GK++H+
Sbjct: 216 ISWTSMISGCVGAGKPKEALNLFHRMQ-TAGIKLDNVALVSTLQACADLGVLDQGKWIHA 274

Query: 235 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
           YI  ++++ +  ++G  +I+MY KCGD+  AI+VF  +  K    W+ +ISG A++G GR
Sbjct: 275 YIK-KHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGR 333

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
           +AL+ F  M    V P+ +TF  +++ACSH GLV +  +LF++M  ++   P ++HY C+
Sbjct: 334 EALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCM 393

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414
           VD+ GRAGLL+EAE  I  MP++   ++WGALLNAC IH N E+  +I + L+       
Sbjct: 394 VDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHG 453

Query: 415 GTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           G +  +++  A A  W    ++R +++  G+ K  GCS I VN
Sbjct: 454 GRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVN 496



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 89/255 (34%), Positives = 128/255 (50%), Gaps = 35/255 (13%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML     +N YTF   LKACS     ++  +IHAH+I+ G   +I+  NSLL+ Y    D
Sbjct: 109 MLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGD 168

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCG--------FH-------------------- 92
           I SA  +F+ V   D VSW ++I G +KCG        F+                    
Sbjct: 169 IKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGA 228

Query: 93  ---KEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
              KEA+++F  +    +K +   LVS L AC+ L     GK IHA+  ++  E + IL 
Sbjct: 229 GKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILG 288

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
             ++D Y +CG L     +F KM ++ V  WT MI GYA  G  +EA+  F +M+ T   
Sbjct: 289 CVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQ-TAGV 347

Query: 207 EPNEATLVNVLSACS 221
           EPN+ T   +L+ACS
Sbjct: 348 EPNQMTFTGILTACS 362


>gi|15218851|ref|NP_171853.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180299|sp|Q9LR69.1|PPR8_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g03540
 gi|9280645|gb|AAF86514.1|AC002560_7 F21B7.16 [Arabidopsis thaliana]
 gi|91805735|gb|ABE65596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189463|gb|AEE27584.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 609

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 148/462 (32%), Positives = 260/462 (56%), Gaps = 11/462 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+S     N +T + A+KACS     +     H  VI +G   + FI ++L + Y   ++
Sbjct: 154 MVSFGLDANEFTLSSAVKACSELGEVRLGRCFHGVVITHGFEWNHFISSTLAYLYGVNRE 213

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC----GIDVKPNANTLVSVLS 116
              A ++F+ +  PDV+ WT ++S  SK   ++EA+ +F     G  + P+ +T  +VL+
Sbjct: 214 PVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLT 273

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
           AC +L   K GK IH   + N   +N+++++++LD Y +CGS+     +F  M K+N VS
Sbjct: 274 ACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVS 333

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           W+ ++GGY + G  ++A+ +F+EME     E +      VL AC+ ++A+  GK +H   
Sbjct: 334 WSALLGGYCQNGEHEKAIEIFREME-----EKDLYCFGTVLKACAGLAAVRLGKEIHGQY 388

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
             R     + +V +A+I++Y K G +  A +V++ ++ ++ I+W+ ++S LA NG G +A
Sbjct: 389 VRRGCFG-NVIVESALIDLYGKSGCIDSASRVYSKMSIRNMITWNAMLSALAQNGRGEEA 447

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
           +  F+ M+   + PD ++FIA+++AC H G+VD+G   F  M+  Y I P  +HY+C++D
Sbjct: 448 VSFFNDMVKKGIKPDYISFIAILTACGHTGMVDEGRNYFVLMAKSYGIKPGTEHYSCMID 507

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN-DEMFDRIRQDLVNKKGVSVG 415
           + GRAGL EEAE  +       + S+WG LL  C  + +   + +RI + ++  +     
Sbjct: 508 LLGRAGLFEEAENLLERAECRNDASLWGVLLGPCAANADASRVAERIAKRMMELEPKYHM 567

Query: 416 TFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           ++ L+SN +    R  D   IR  + R G+ K  G SWI+ +
Sbjct: 568 SYVLLSNMYKAIGRHGDALNIRKLMVRRGVAKTVGQSWIDAH 609



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 110/415 (26%), Positives = 198/415 (47%), Gaps = 34/415 (8%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV-KDIFSAHQIFNSV 71
           +   L+ C+        ++ HAHV++ G   D  + NSLL  Y  +   +    ++F+  
Sbjct: 64  YASLLQTCNKVFSFIHGIQFHAHVVKSGLETDRNVGNSLLSLYFKLGPGMRETRRVFDGR 123

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNANTLVSVLSACSSLVSHKL 126
              D +SWT+++SG      H +A+++F      G+D   N  TL S + ACS L   +L
Sbjct: 124 FVKDAISWTSMMSGYVTGKEHVKALEVFVEMVSFGLDA--NEFTLSSAVKACSELGEVRL 181

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           G+  H   + +  E N  + + +   Y           +F +MP+ +V+ WT ++  +++
Sbjct: 182 GRCFHGVVITHGFEWNHFISSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSK 241

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
               +EA+ +F  M + K   P+ +T   VL+AC ++  L  GK +H  + T   +  + 
Sbjct: 242 NDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITN-GIGSNV 300

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
           +V +++++MY KCG V  A QVFN ++ K+ +SWS ++ G   NG   +A+++F  M   
Sbjct: 301 VVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREMEEK 360

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC---------VVDM 357
            ++     F  ++ AC+  GL         A+    EI  Q     C         ++D+
Sbjct: 361 DLY----CFGTVLKACA--GLA--------AVRLGKEIHGQYVRRGCFGNVIVESALIDL 406

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           YG++G ++ A     +M I      W A+L+A   +   E       D+V KKG+
Sbjct: 407 YGKSGCIDSASRVYSKMSIR-NMITWNAMLSALAQNGRGEEAVSFFNDMV-KKGI 459



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 62/303 (20%), Positives = 124/303 (40%), Gaps = 45/303 (14%)

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G   EA+ +      + E         ++L  C+ + +   G   H+++  +  L     
Sbjct: 40  GQLTEAIRILNSTHSS-EIPATPKLYASLLQTCNKVFSFIHGIQFHAHV-VKSGLETDRN 97

Query: 248 VGNAVINMYVKCG-DVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
           VGN+++++Y K G  +    +VF+    KD ISW++++SG        +AL++F  M+  
Sbjct: 98  VGNSLLSLYFKLGPGMRETRRVFDGRFVKDAISWTSMMSGYVTGKEHVKALEVFVEMVSF 157

Query: 307 AVFPDDVTFIALISACS-----------HGGLVDQGL----ILFKAMSTVYEI------- 344
            +  ++ T  + + ACS           HG ++  G      +   ++ +Y +       
Sbjct: 158 GLDANEFTLSSAVKACSELGEVRLGRCFHGVVITHGFEWNHFISSTLAYLYGVNREPVDA 217

Query: 345 --------VPQMQHYACVVDMYGRAGLLEEA----EAFIREMPIEAEWSVWGALLNACRI 392
                    P +  +  V+  + +  L EEA     A  R   +  + S +G +L AC  
Sbjct: 218 RRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGN 277

Query: 393 HRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM--GLKKKTG 450
            R  +    I   L+      +G+  ++ ++    D +     +R E R++  G+ KK  
Sbjct: 278 LRRLKQGKEIHGKLITN---GIGSNVVVESSL--LDMYGKCGSVR-EARQVFNGMSKKNS 331

Query: 451 CSW 453
            SW
Sbjct: 332 VSW 334


>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
 gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
          Length = 546

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 153/452 (33%), Positives = 249/452 (55%), Gaps = 42/452 (9%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +TF+  LK C+     +    +H  V++YG   + F++N+L++F+    D+  A  IF
Sbjct: 112 DKFTFSFLLKGCTRLEWRKTGFCVHGKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSIF 171

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
             +    VVSW+ + +G ++ G    A  +F  + VK               LVS     
Sbjct: 172 YDLPERSVVSWSALTAGYARRGELGVARQIFDEMPVK--------------DLVSW---- 213

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
                             N ++  Y++ G + +   LF + P+++VV+W TMI GY  RG
Sbjct: 214 ------------------NVMITGYVKNGEMENARTLFDEAPEKDVVTWNTMIAGYVLRG 255

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS--TRYDLSVSN 246
             ++A+ +F+EM    E  P+E T++++LSAC+ +  L  G+ +H  IS  TR DLSV  
Sbjct: 256 EQRQALEMFEEMRNVGEC-PDEVTMLSLLSACADLGDLQVGRKLHCSISEMTRGDLSV-- 312

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM-II 305
           L+GNA+++MY KCG + IA+QVF  +  KD  +W++VI GLA +G   ++++LF+ M  +
Sbjct: 313 LLGNALVDMYAKCGSIEIALQVFKKMREKDVTTWNSVIGGLAFHGHAEESIKLFAEMQAL 372

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             + P+++TF+ +I ACSH G V++G   FK M   Y+I P M H+ C+VD+ GRAGLL 
Sbjct: 373 KNIKPNEITFVGVIVACSHAGNVEEGRRYFKLMRERYDIEPNMIHHGCMVDLLGRAGLLS 432

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EA   I +M IE    +W  LL ACR+H N E+     + L+  +    G + L+SN +A
Sbjct: 433 EAFELIAKMEIEPNAIIWRTLLGACRVHGNVELGRLANERLLKLRRDESGDYVLLSNIYA 492

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            A  W+   ++R  +   G++K+ G S IE +
Sbjct: 493 SAGEWDGAEEVRKLMDDGGVRKEAGRSLIEAD 524



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 155/338 (45%), Gaps = 47/338 (13%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSS 120
           AHQ+F  +  PD+  W T++ G S+     + + ++  ++   VKP+  T   +L  C+ 
Sbjct: 66  AHQVFAQITEPDIFMWNTMMRGSSQSKNPSKVVLLYTQMENRGVKPDKFTFSFLLKGCTR 125

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           L   K G  +H   L+   E N  + N ++ F+  CG L     +F  +P+R+VVSW+ +
Sbjct: 126 LEWRKTGFCVHGKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSIFYDLPERSVVSWSAL 185

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
             GYA RG    A  +F EM                                        
Sbjct: 186 TAGYARRGELGVARQIFDEM---------------------------------------- 205

Query: 241 DLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
              V +LV  N +I  YVK G++  A  +F+    KD ++W+T+I+G  + G  RQAL++
Sbjct: 206 --PVKDLVSWNVMITGYVKNGEMENARTLFDEAPEKDVVTWNTMIAGYVLRGEQRQALEM 263

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
           F  M      PD+VT ++L+SAC+  G +  G  L  ++S +      +     +VDMY 
Sbjct: 264 FEEMRNVGECPDEVTMLSLLSACADLGDLQVGRKLHCSISEMTRGDLSVLLGNALVDMYA 323

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
           + G +E A    ++M  E + + W +++     H + E
Sbjct: 324 KCGSIEIALQVFKKMR-EKDVTTWNSVIGGLAFHGHAE 360


>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
          Length = 676

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 160/452 (35%), Positives = 251/452 (55%), Gaps = 11/452 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           T    L  CS     +    +HA ++E  +L  DI + NSLL  Y    ++  A  IF  
Sbjct: 226 TVVSVLPVCSYLKELEVGRRVHA-LVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYE 284

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKL 126
           +   DVVSWTT+++G    G  + A+ + C +     VKPN  TL SVLSAC+SL S K 
Sbjct: 285 MDKRDVVSWTTMMNGYILNGDARSAL-LLCQMMQFESVKPNFVTLASVLSACASLYSLKH 343

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           G+ +H  ++R   E+ +I++ A++D Y +C ++     +F K  K+    W  +I G   
Sbjct: 344 GRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIH 403

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
            G  ++A+ +F++M   +  +PN+ATL ++L A + ++ L   + +H Y+     LS   
Sbjct: 404 NGLSRKAIELFKQM-LMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIE 462

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDK--ISWSTVISGLAMNGCGRQALQLFSLMI 304
            V   +I++Y KCG +  A  +FN +  KDK  I+WS +I+G  M+G G  A+ LF  M+
Sbjct: 463 -VATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMV 521

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
            + V P+++TF +++ ACSH GLVD+GL LFK M    ++  +  HY CV+D+ GRAG L
Sbjct: 522 QSGVKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRL 581

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           EEA   IR M      +VWGALL +C IH N E+ +   + L   +  + G + L++N +
Sbjct: 582 EEAYELIRTMAFRPNHAVWGALLGSCVIHENVELGEVAAKWLFELEPGNTGNYVLLANIY 641

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           +   RW D   +R  +  +GL+K    S IEV
Sbjct: 642 SAVGRWRDAEHVRLMMNNIGLRKTPAHSLIEV 673



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 166/318 (52%), Gaps = 9/318 (2%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIF---IQNSLLHFYVTVKDIFSAHQIFN 69
           +   L+ C+         +IHAH I  G L   +   + +SL   Y        A ++F+
Sbjct: 21  YQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMCGCAPHARKLFD 80

Query: 70  SVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK----PNANTLVSVLSACSSLVSHK 125
            +  P + SW  +I   +  G   +A+ +F  +       P+  T   V+ AC   +  +
Sbjct: 81  ELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPE 140

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           +G  IHA ++ +  +++  + N+++  Y+ CG +     +F  M +R +VSW TMI GY 
Sbjct: 141 MGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYF 200

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G  KEA+ VF  M   K  EP+ AT+V+VL  CS +  L  G+ VH+ +  + +L   
Sbjct: 201 KNGCVKEALMVFDWM-IGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVK-NLGED 258

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V N++++MY KCG++  A  +F  +  +D +SW+T+++G  +NG  R AL L  +M  
Sbjct: 259 ISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQF 318

Query: 306 NAVFPDDVTFIALISACS 323
            +V P+ VT  +++SAC+
Sbjct: 319 ESVKPNFVTLASVLSACA 336



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 142/283 (50%), Gaps = 12/283 (4%)

Query: 113 SVLSACSSLVSHKLGKAIHAHS-----LRNLNENNIILDNAILDFYIRCGSLASCGYLFV 167
           S+L  C+S  S    K IHAH+     L +   ++++  +++   Y  CG       LF 
Sbjct: 23  SLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLL--SSLAAAYAMCGCAPHARKLFD 80

Query: 168 KMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 227
           ++   ++ SW  MI  Y   G   +A+ +F +M  +    P+  T   V+ AC       
Sbjct: 81  ELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPE 140

Query: 228 FGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
            G  +H+  + + +D      V N+++ MY+ CG++ +A +VF+++  +  +SW+T+I+G
Sbjct: 141 MGALIHARTVMSGFDSDA--FVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMING 198

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 346
              NGC ++AL +F  MI   + PD  T ++++  CS+   ++ G  +  A+  V  +  
Sbjct: 199 YFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRV-HALVEVKNLGE 257

Query: 347 QMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
            +  +  ++DMY + G ++EA+    EM  + +   W  ++N 
Sbjct: 258 DISVWNSLLDMYAKCGNMDEAQMIFYEMD-KRDVVSWTTMMNG 299



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 132/272 (48%), Gaps = 6/272 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L AC+  +  +    +H   I      ++ ++ +L+  Y    ++  + ++F
Sbjct: 324 NFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVF 383

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           +         W  IISG    G  ++AI++F  +    V PN  TL S+L A + L   +
Sbjct: 384 SKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQ 443

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK--RNVVSWTTMIGG 183
             + +H + +R+   + I +   ++D Y +CGSL S   +F  +PK  +++++W+ +I G
Sbjct: 444 QARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAG 503

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           Y   G  + A+S+F +M ++   +PNE T  ++L ACS    +  G  +  ++     +S
Sbjct: 504 YGMHGHGETAISLFDQMVQSG-VKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDNQMS 562

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           +       VI++  + G +  A ++   +A++
Sbjct: 563 LRTDHYTCVIDLLGRAGRLEEAYELIRTMAFR 594



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 3/140 (2%)

Query: 198 QEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS--VSNLVGNAVINM 255
           Q + K+K      A   ++L  C+S  ++   K +H++  T   LS   S+ + +++   
Sbjct: 6   QALSKSKHLLTATARYQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAA 65

Query: 256 YVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA-VFPDDVT 314
           Y  CG    A ++F+ L      SW+ +I     +G    AL LF  M+ +   +PD+ T
Sbjct: 66  YAMCGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYT 125

Query: 315 FIALISACSHGGLVDQGLIL 334
           +  +I AC    L + G ++
Sbjct: 126 YPFVIKACGDYLLPEMGALI 145


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 148/427 (34%), Positives = 252/427 (59%), Gaps = 24/427 (5%)

Query: 49  NSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNA 108
           N L+  YV    I  A ++F+ +   +VVSWT +I G  + G  +EA  +F  +   P  
Sbjct: 29  NGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRM---PER 85

Query: 109 NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNE-NNIILDNAILDFYIRCGSLASCGYLFV 167
           N +VS       L+    G+   A  L ++    +++    ++D     G L     +F 
Sbjct: 86  N-VVSWTVMLGGLIED--GRVDEARQLFDMMPVKDVVASTNMIDGLCSEGRLIEAREIFD 142

Query: 168 KMPKRNVVSWTTMIGG-------------YAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           +MP+RNVV+WT+MI G             Y  +GF  EA+++F  M++ +   P+  +++
Sbjct: 143 EMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQR-EGVRPSFPSVI 201

Query: 215 NVLSACSSISALSFGKYVHS-YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 273
           +VLS C S+++L  G+ VHS  + +++D+ +   V + +I MY+KCGD+  A +VF+  +
Sbjct: 202 SVLSVCGSLASLDHGRQVHSQLVRSQFDIDI--YVSSVLITMYIKCGDLVTAKRVFDRFS 259

Query: 274 YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI 333
            KD + W+++I+G A +G G +AL++F  M  +++ PD++TFI ++SACS+ G V +GL 
Sbjct: 260 SKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLE 319

Query: 334 LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           +F++M + Y++ P+ +HYAC+VD+ GRAG L EA   I  MP+EA+  VWGALL ACR H
Sbjct: 320 IFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTH 379

Query: 394 RNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSW 453
           +N ++ +   + L+  +  + G + L+SN ++   RW+D  ++R  +R   L+K  GCSW
Sbjct: 380 KNLDLAEIAAKKLLQLEPNNAGPYILLSNLYSSQSRWKDVVELRKTMRAKNLRKSPGCSW 439

Query: 454 IEVNPSI 460
           IEV+  +
Sbjct: 440 IEVDKKV 446



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 134/260 (51%), Gaps = 18/260 (6%)

Query: 42  LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISG-------------LSK 88
           + D+    +++    +   +  A +IF+ +   +VV+WT++ISG               +
Sbjct: 115 VKDVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYER 174

Query: 89  CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
            GF  EA+ +F  +    V+P+  +++SVLS C SL S   G+ +H+  +R+  + +I +
Sbjct: 175 KGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYV 234

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            + ++  YI+CG L +   +F +   +++V W ++I GYA+ GF ++A+ VF +M  +  
Sbjct: 235 SSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSI 294

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
           A P+E T + VLSACS    +  G  +   + ++Y +         ++++  + G +  A
Sbjct: 295 A-PDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEA 353

Query: 266 IQVF-NMLAYKDKISWSTVI 284
           + +  NM    D I W  ++
Sbjct: 354 MNLIENMPVEADAIVWGALL 373



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 94/203 (46%), Gaps = 13/203 (6%)

Query: 137 NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSV 196
            + E N I  N ++  Y++ G ++    +F KMP+RNVVSWT MI GY + G  +EA  +
Sbjct: 19  KMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELL 78

Query: 197 FQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV-GNAVINM 255
           F  M      E N  +   +L        +   + +   +  +  ++ +N++ G      
Sbjct: 79  FWRM-----PERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVASTNMIDGLCSEGR 133

Query: 256 YVKCGDVGIAIQVFNMLAY-------KDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            ++  ++   +   N++A+       KD  +WST+I      G   +AL LFSLM    V
Sbjct: 134 LIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGV 193

Query: 309 FPDDVTFIALISACSHGGLVDQG 331
            P   + I+++S C     +D G
Sbjct: 194 RPSFPSVISVLSVCGSLASLDHG 216



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 85/169 (50%), Gaps = 11/169 (6%)

Query: 20  CSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSW 79
            SL H  Q    +H+ ++      DI++ + L+  Y+   D+ +A ++F+     D+V W
Sbjct: 211 ASLDHGRQ----VHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMW 266

Query: 80  TTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR 136
            +II+G ++ GF ++A+++F  +    + P+  T + VLSACS     K G  I   S++
Sbjct: 267 NSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIF-ESMK 325

Query: 137 NLNENNIILDN--AILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIG 182
           +  + +   ++   ++D   R G L     L   MP + + + W  ++G
Sbjct: 326 SKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLG 374



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 21/184 (11%)

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224
           LF KMP+ N +SW  ++ GY + G   EA  VF +M +            NV+S  + I 
Sbjct: 16  LFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPER-----------NVVSWTAMIR 64

Query: 225 ALSFGKYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTV 283
                  +       + +   N+V    ++   ++ G V  A Q+F+M+  KD ++ + +
Sbjct: 65  GYVQEGLIEEAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVASTNM 124

Query: 284 ISGLAMNGCGRQALQLFSLMIINAVF---------PDDVTFIALISACSHGGLVDQGLIL 334
           I GL   G   +A ++F  M    V           DD T+  +I      G   + L L
Sbjct: 125 IDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALAL 184

Query: 335 FKAM 338
           F  M
Sbjct: 185 FSLM 188


>gi|22328675|ref|NP_193307.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75161477|sp|Q8VYH0.1|PP313_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g15720
 gi|18175616|gb|AAL59897.1| unknown protein [Arabidopsis thaliana]
 gi|20465541|gb|AAM20253.1| unknown protein [Arabidopsis thaliana]
 gi|332658240|gb|AEE83640.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 616

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 150/439 (34%), Positives = 245/439 (55%), Gaps = 10/439 (2%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           +H   ++ G   D F  N L+  YV +K+I +A ++F+ +  P+VVSWT++ISG +  G 
Sbjct: 51  LHTLTLKLGFASDTFTVNHLVISYVKLKEINTARKLFDEMCEPNVVSWTSVISGYNDMGK 110

Query: 92  HKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
            + A+ MF  +     V PN  T  SV  ACS+L   ++GK IHA    +    NI++ +
Sbjct: 111 PQNALSMFQKMHEDRPVPPNEYTFASVFKACSALAESRIGKNIHARLEISGLRRNIVVSS 170

Query: 148 AILDFYIRCGSLASCGYLFVKMPK--RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
           +++D Y +C  + +   +F  M    RNVVSWT+MI  YA+     EA+ +F+       
Sbjct: 171 SLVDMYGKCNDVETARRVFDSMIGYGRNVVSWTSMITAYAQNARGHEAIELFRSFNAALT 230

Query: 206 AE-PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
           ++  N+  L +V+SACSS+  L +GK  H  + TR     + +V  ++++MY KCG +  
Sbjct: 231 SDRANQFMLASVISACSSLGRLQWGKVAHGLV-TRGGYESNTVVATSLLDMYAKCGSLSC 289

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
           A ++F  +     IS++++I   A +G G  A++LF  M+   + P+ VT + ++ ACSH
Sbjct: 290 AEKIFLRIRCHSVISYTSMIMAKAKHGLGEAAVKLFDEMVAGRINPNYVTLLGVLHACSH 349

Query: 325 GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS--V 382
            GLV++GL     M+  Y +VP  +HY CVVDM GR G ++EA    + + + AE    +
Sbjct: 350 SGLVNEGLEYLSLMAEKYGVVPDSRHYTCVVDMLGRFGRVDEAYELAKTIEVGAEQGALL 409

Query: 383 WGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442
           WGALL+A R+H   E+     + L+         +  +SN +A +  WED+  +R E++R
Sbjct: 410 WGALLSAGRLHGRVEIVSEASKRLIQSNQQVTSAYIALSNAYAVSGGWEDSESLRLEMKR 469

Query: 443 MGLKKKTGCSWIEVNPSIF 461
            G  K+  CSWIE   S++
Sbjct: 470 SGNVKERACSWIENKDSVY 488



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 152/297 (51%), Gaps = 11/297 (3%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           P   N YTF    KACS     +    IHA +   G   +I + +SL+  Y    D+ +A
Sbjct: 126 PVPPNEYTFASVFKACSALAESRIGKNIHARLEISGLRRNIVVSSSLVDMYGKCNDVETA 185

Query: 65  HQIFNSVV--FPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV-----KPNANTLVSVLSA 117
            ++F+S++    +VVSWT++I+  ++     EAI++F   +      + N   L SV+SA
Sbjct: 186 RRVFDSMIGYGRNVVSWTSMITAYAQNARGHEAIELFRSFNAALTSDRANQFMLASVISA 245

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           CSSL   + GK  H    R   E+N ++  ++LD Y +CGSL+    +F+++   +V+S+
Sbjct: 246 CSSLGRLQWGKVAHGLVTRGGYESNTVVATSLLDMYAKCGSLSCAEKIFLRIRCHSVISY 305

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
           T+MI   A+ G  + AV +F EM   +   PN  TL+ VL ACS    ++ G    S ++
Sbjct: 306 TSMIMAKAKHGLGEAAVKLFDEMVAGR-INPNYVTLLGVLHACSHSGLVNEGLEYLSLMA 364

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML---AYKDKISWSTVISGLAMNG 291
            +Y +   +     V++M  + G V  A ++   +   A +  + W  ++S   ++G
Sbjct: 365 EKYGVVPDSRHYTCVVDMLGRFGRVDEAYELAKTIEVGAEQGALLWGALLSAGRLHG 421


>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
           [Vitis vinifera]
 gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 160/452 (35%), Positives = 251/452 (55%), Gaps = 11/452 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           T    L  CS     +    +HA ++E  +L  DI + NSLL  Y    ++  A  IF  
Sbjct: 226 TVVSVLPVCSYLKELEVGRRVHA-LVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYE 284

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKL 126
           +   DVVSWTT+++G    G  + A+ + C +     VKPN  TL SVLSAC+SL S K 
Sbjct: 285 MDKRDVVSWTTMMNGYILNGDARSAL-LLCQMMQFESVKPNFVTLASVLSACASLYSLKH 343

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           G+ +H  ++R   E+ +I++ A++D Y +C ++     +F K  K+    W  +I G   
Sbjct: 344 GRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKTSKQRTAPWNAIISGCIH 403

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
            G  ++A+ +F++M   +  +PN+ATL ++L A + ++ L   + +H Y+     LS   
Sbjct: 404 NGLSRKAIELFKQM-LMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIE 462

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDK--ISWSTVISGLAMNGCGRQALQLFSLMI 304
            V   +I++Y KCG +  A  +FN +  KDK  I+WS +I+G  M+G G  A+ LF  M+
Sbjct: 463 -VATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMV 521

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
            + V P+++TF +++ ACSH GLVD+GL LFK M    ++  +  HY CV+D+ GRAG L
Sbjct: 522 QSGVKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRL 581

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           EEA   IR M      +VWGALL +C IH N E+ +   + L   +  + G + L++N +
Sbjct: 582 EEAYELIRTMAFRPNHAVWGALLGSCVIHENVELGEVAAKWLFELEPGNTGNYVLLANIY 641

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           +   RW D   +R  +  +GL+K    S IEV
Sbjct: 642 SAVGRWRDAEHVRLMMNNIGLRKTPAHSLIEV 673



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 166/318 (52%), Gaps = 9/318 (2%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIF---IQNSLLHFYVTVKDIFSAHQIFN 69
           +   L+ C+         +IHAH I  G L   +   + +SL   Y        A ++F+
Sbjct: 21  YQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMFGCAPHARKLFD 80

Query: 70  SVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK----PNANTLVSVLSACSSLVSHK 125
            +  P + SW  +I   +  G   +A+ +F  +       P+  T   V+ AC   +  +
Sbjct: 81  ELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPE 140

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           +G  IHA ++ +  +++  + N+++  Y+ CG +     +F  M +R +VSW TMI GY 
Sbjct: 141 MGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYF 200

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G  KEA+ VF  M   K  EP+ AT+V+VL  CS +  L  G+ VH+ +  + +L   
Sbjct: 201 KNGCVKEALMVFDWM-IGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVK-NLGED 258

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V N++++MY KCG++  A  +F  +  +D +SW+T+++G  +NG  R AL L  +M  
Sbjct: 259 ISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQF 318

Query: 306 NAVFPDDVTFIALISACS 323
            +V P+ VT  +++SAC+
Sbjct: 319 ESVKPNFVTLASVLSACA 336



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 141/283 (49%), Gaps = 12/283 (4%)

Query: 113 SVLSACSSLVSHKLGKAIHAHS-----LRNLNENNIILDNAILDFYIRCGSLASCGYLFV 167
           S+L  C+S  S    K IHAH+     L +   ++++  +++   Y   G       LF 
Sbjct: 23  SLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLL--SSLAAAYAMFGCAPHARKLFD 80

Query: 168 KMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 227
           ++   ++ SW  MI  Y   G   +A+ +F +M  +    P+  T   V+ AC       
Sbjct: 81  ELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPE 140

Query: 228 FGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
            G  +H+  + + +D      V N+++ MY+ CG++ +A +VF+++  +  +SW+T+I+G
Sbjct: 141 MGALIHARTVMSGFDSDA--FVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMING 198

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 346
              NGC ++AL +F  MI   + PD  T ++++  CS+   ++ G  +  A+  V  +  
Sbjct: 199 YFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRV-HALVEVKNLGE 257

Query: 347 QMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
            +  +  ++DMY + G ++EA+    EM  + +   W  ++N 
Sbjct: 258 DISVWNSLLDMYAKCGNMDEAQMIFYEMD-KRDVVSWTTMMNG 299



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 132/272 (48%), Gaps = 6/272 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L AC+  +  +    +H   I      ++ ++ +L+  Y    ++  + ++F
Sbjct: 324 NFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVF 383

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           +         W  IISG    G  ++AI++F  +    V PN  TL S+L A + L   +
Sbjct: 384 SKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQ 443

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK--RNVVSWTTMIGG 183
             + +H + +R+   + I +   ++D Y +CGSL S   +F  +PK  +++++W+ +I G
Sbjct: 444 QARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAG 503

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           Y   G  + A+S+F +M ++   +PNE T  ++L ACS    +  G  +  ++     +S
Sbjct: 504 YGMHGHGETAISLFDQMVQSG-VKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDNQMS 562

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           +       VI++  + G +  A ++   +A++
Sbjct: 563 LRTDHYTCVIDLLGRAGRLEEAYELIRTMAFR 594



 Score = 38.5 bits (88), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 3/140 (2%)

Query: 198 QEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS--VSNLVGNAVINM 255
           Q + K+K      A   ++L  C+S  ++   K +H++  T   LS   S+ + +++   
Sbjct: 6   QALSKSKHLLTATARYQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAA 65

Query: 256 YVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA-VFPDDVT 314
           Y   G    A ++F+ L      SW+ +I     +G    AL LF  M+ +   +PD+ T
Sbjct: 66  YAMFGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYT 125

Query: 315 FIALISACSHGGLVDQGLIL 334
           +  +I AC    L + G ++
Sbjct: 126 YPFVIKACGDYLLPEMGALI 145


>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Vitis vinifera]
          Length = 633

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 150/465 (32%), Positives = 258/465 (55%), Gaps = 12/465 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML+     N +T +  +KACS     +     H  V+  G   +  I ++L+  +     
Sbjct: 152 MLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCA 211

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK----PNANTLVSVLS 116
           +  A Q+F+ ++ PD + WT+IIS L++  F  EA+  F  +       P+  T  +VL+
Sbjct: 212 LDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLT 271

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
           AC +L   K GK +HA  +      N++++++++D Y +CGS+     +F +MP +N VS
Sbjct: 272 ACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVS 331

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH-SY 235
           W+ ++GGY + G  K  + +F++MEK      +      +L  C+ ++A+  GK VH  Y
Sbjct: 332 WSALLGGYCQNGDFKSVIQIFRKMEKV-----DLYCFGTILRTCAGLAAVRQGKEVHCQY 386

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
           I       V  +V +A++++Y KCG +  A  +F+ +  ++ I+W+++I G A NG G +
Sbjct: 387 IRKGGWRDV--IVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEE 444

Query: 296 ALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVV 355
           AL++F+ M+   + PD ++FI ++ ACSH GLVD+G   F +M+  Y I   ++HY+C+V
Sbjct: 445 ALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMV 504

Query: 356 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVG 415
           D+ GRAGLLEEAE  I       + S+W ALL AC    N E+ +RI + ++  +     
Sbjct: 505 DLLGRAGLLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAERIAKRVMELEPDYHL 564

Query: 416 TFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           ++ L++N +    RW D  +IR  ++  G+ K  G SWIE   ++
Sbjct: 565 SYVLLANVYKAVGRWNDALRIRRLMKDRGVNKMPGKSWIETKNNL 609



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/428 (27%), Positives = 211/428 (49%), Gaps = 26/428 (6%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV-KDIFSAHQIFNSV 71
           +   L+ C+        L+IHAHVI+ G   D F+ NSLL  Y  +  D     ++F+ +
Sbjct: 62  YASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGL 121

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGK 128
              DV+SWT++ISG  + G    ++++F       V+PNA TL +V+ ACS L   KLG+
Sbjct: 122 FVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGR 181

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
             H   L    ++N ++ +A++D + R  +L     LF ++ + + + WT++I       
Sbjct: 182 IFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRND 241

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
           F  EA+  F  M++     P+  T   VL+AC ++  L  GK VH+ + T      + +V
Sbjct: 242 FFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITT-GFCGNVVV 300

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            +++++MY KCG VG + ++F+ +  K+ +SWS ++ G   NG  +  +Q+F  M    +
Sbjct: 301 ESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEKVDL 360

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVY-------EIVPQMQHYACVVDMYGRA 361
           +     F  ++  C+    V QG    K +   Y       +++ +    + +VD+Y + 
Sbjct: 361 Y----CFGTILRTCAGLAAVRQG----KEVHCQYIRKGGWRDVIVE----SALVDLYAKC 408

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           G +E A+    +MP+      W +++     +   E   RI   +V K+G+     + + 
Sbjct: 409 GCIEYAQTIFDQMPVR-NLITWNSMIGGFAQNGRGEEALRIFNQMV-KEGIKPDYISFIG 466

Query: 422 NTFAGADR 429
             FA + R
Sbjct: 467 ILFACSHR 474



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 108/215 (50%), Gaps = 21/215 (9%)

Query: 200 MEKTKEAEPNEATLVNVLSA-----CSSISALSFGKYVHSYISTRYDLSVSNLVGNAVIN 254
           ++  K  +P E +   VL A     C+ + A + G  +H+++  +  L     VGN+++ 
Sbjct: 44  LQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHV-IKSGLEFDRFVGNSLLT 102

Query: 255 MYVKCG-DVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDV 313
           +Y K G D     +VF+ L  KD ISW+++ISG    G    +L+LF  M+   V P+  
Sbjct: 103 LYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAF 162

Query: 314 TFIALISACSH-----GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
           T  A+I ACS       G +  G++L +   + Y I       + ++DM+GR   L++A 
Sbjct: 163 TLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIA------SALIDMHGRNCALDDAR 216

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIR 403
               E+ +E +   W ++++A  + RND   + +R
Sbjct: 217 QLFDEL-LEPDAICWTSIISA--LTRNDFFDEALR 248


>gi|38567725|emb|CAE76014.1| B1358B12.23 [Oryza sativa Japonica Group]
          Length = 918

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 146/433 (33%), Positives = 261/433 (60%), Gaps = 15/433 (3%)

Query: 33  HAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFH 92
           HA ++       + I N+L+  Y   K +  A  +F  +   D  SW++++    K G  
Sbjct: 339 HAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLD 398

Query: 93  KEAIDMFCGIDVKP------NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
            + ++++  +  +       + N+L+S++S+CS L   +LG++ H +S+++L   N  + 
Sbjct: 399 LKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVA 458

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           NA++  Y RCG+      +F  +  ++VV+W+ +I  Y+  G  K+A+ ++ +M  T+  
Sbjct: 459 NALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQM-LTEGV 517

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYIST---RYDLSVSNLVGNAVINMYVKCGDVG 263
           +PN ATLV+V+S+C++++AL  G+ +HS++       DLS+      A+++MY+KCG +G
Sbjct: 518 KPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICT----ALVDMYMKCGQLG 573

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
           IA ++F+ +  +D ++W+ +ISG  M+G   QAL+LFS+M    V P+ +TF+A++SAC 
Sbjct: 574 IARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACC 633

Query: 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 383
           H GLVD+G  LF  M   Y + P ++HYAC+VD+ G++G L+EAE  +  MPIE +  +W
Sbjct: 634 HAGLVDKGRELFTRMEE-YSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIW 692

Query: 384 GALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443
           G LL AC++H N EM  R+ +        + G + LMSN++  A++W +  K+RD ++  
Sbjct: 693 GTLLGACKMHDNFEMGLRVAKKAFASDPENDGYYILMSNSYGSAEKWNEIEKLRDMMKNH 752

Query: 444 GLKKKTGCSWIEV 456
           G++K  G S I++
Sbjct: 753 GVEKSIGWSTIDI 765



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 199/392 (50%), Gaps = 12/392 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L+AC +         +H   ++ G  H   + +SL   Y        A  +F
Sbjct: 214 NSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILF 273

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   D+VSWT++I    + G  ++A+++F G++   ++P+   +  +L+   +    +
Sbjct: 274 PELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVR 333

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK  HA  +R    +++++ NA++  Y +C  +     +F  + +R+  SW++M+  Y 
Sbjct: 334 GGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYC 393

Query: 186 ERGFCKEAVSVFQEME--KTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           + G   + + +++EM+     E E +  +L++++S+CS +  L  G+  H Y S ++   
Sbjct: 394 KAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCY-SIKHLAG 452

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
            ++ V NA+I+MY +CG+  +A ++F M+  KD ++WS +IS  +  G  + AL L+  M
Sbjct: 453 ENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQM 512

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC--VVDMYGRA 361
           +   V P+  T +++IS+C++   ++ G ++    S V ++  +     C  +VDMY + 
Sbjct: 513 LTEGVKPNSATLVSVISSCANLAALEHGELIH---SHVKDVGLECDLSICTALVDMYMKC 569

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           G L  A      M +E +   W  +++   +H
Sbjct: 570 GQLGIARKMFDSM-LERDVVTWNVMISGYGMH 600



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 145/282 (51%), Gaps = 12/282 (4%)

Query: 32  IHAHVIEYGHLH---DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           +HA+ + +G L     + + +SL++ Y     +  A ++F+ +   DVV+WT +ISG   
Sbjct: 129 VHAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVC 188

Query: 89  CGFHKEAIDMFCGI-------DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNEN 141
            G   E +     +         +PN+ T+ S L AC  L    +G  +H   ++    +
Sbjct: 189 NGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGH 248

Query: 142 NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME 201
              + +++   Y +C S      LF ++P++++VSWT++IG Y   G  ++AV +F  ME
Sbjct: 249 CPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGME 308

Query: 202 KTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGD 261
           ++   +P+E  +  +L+   + + +  GK  H+ I  R +   S L+GNA+I+MY KC  
Sbjct: 309 ESG-LQPDEVVISCLLAGLGNDAKVRGGKTFHAAI-VRRNFGDSVLIGNALISMYAKCKQ 366

Query: 262 VGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           V IA  VF ML  +D  SWS+++      G   + L+L+  M
Sbjct: 367 VDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREM 408



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 103/234 (44%), Gaps = 20/234 (8%)

Query: 170 PKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 229
           P  +   W +++            +S  + M +   A P+  T   V SA + + AL  G
Sbjct: 68  PCPDAFLWNSLLRSRHRASDFASTLSAHRRM-RASGARPSRFTAPLVASAAAELGALPVG 126

Query: 230 KYVHSYISTRYDL---SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
             VH+Y S R+ L     S  V ++++ MY +CG V  A+++F+ +  +D ++W+ VISG
Sbjct: 127 AAVHAY-SVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISG 185

Query: 287 LAMNGCGRQALQLFSLMIINA----VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 342
              NG   + L     M+ +A      P+  T  + + AC   G +  G  L       +
Sbjct: 186 CVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHG-----F 240

Query: 343 EIVPQMQHYACVV----DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CR 391
            +   + H   VV     MY +    E+A     E+P E +   W +L+ A CR
Sbjct: 241 GVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELP-EKDLVSWTSLIGAYCR 293



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 4/186 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML+     N  T    + +C+     +    IH+HV + G   D+ I  +L+  Y+    
Sbjct: 512 MLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQ 571

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           +  A ++F+S++  DVV+W  +ISG    G   +A+ +F  ++   VKPN+ T +++LSA
Sbjct: 572 LGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSA 631

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVS 176
           C        G+ +         E N+     ++D   + G L     +   MP + +   
Sbjct: 632 CCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGI 691

Query: 177 WTTMIG 182
           W T++G
Sbjct: 692 WGTLLG 697


>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Vitis vinifera]
          Length = 748

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 154/486 (31%), Positives = 257/486 (52%), Gaps = 39/486 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +++T+   LKAC          E+H  +        + + N+L+  Y     +  A  +F
Sbjct: 200 DNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLF 259

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA---NT------------ 110
           + +   D VSW ++IS  +  G   EA ++F  +   D++ N    NT            
Sbjct: 260 DKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYK 319

Query: 111 --------------------LVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAIL 150
                               L+  L ACS +   KLGK IH+ ++R+       + NA++
Sbjct: 320 GALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNALI 379

Query: 151 DFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNE 210
             Y RC  L     LF  M  +++++W ++I G       +EA  + +EM      EPN 
Sbjct: 380 TMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEEASFLLREM-LLFGIEPNY 438

Query: 211 ATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN 270
            T+ +VL  C+ ++ L  GK  H Y++ R D     L+ NA+++MY + G V  A +VF+
Sbjct: 439 VTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFD 498

Query: 271 MLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQ 330
           ML  +DK++++++I+G  M G G+ AL+LF  M    + PD +T IA++SACSH GLV Q
Sbjct: 499 MLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQ 558

Query: 331 GLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 390
           G +LF+ M ++Y + P ++H+AC+ D++GRAGLL +A+  IR MP +   ++W  L+ AC
Sbjct: 559 GQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGAC 618

Query: 391 RIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTG 450
           RIHRN E+ +   + L+  K  + G + L++N +A A  W    K+R  +R +G++K  G
Sbjct: 619 RIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKLAKVRIFMRDLGVRKAPG 678

Query: 451 CSWIEV 456
           C+W++V
Sbjct: 679 CAWVDV 684



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 170/396 (42%), Gaps = 40/396 (10%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +  +  L +C+      +  ++H H+I  G      +   L+ FY     +  AH I  +
Sbjct: 101 HPISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITEN 160

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLG 127
                   W  +IS   + GF ++A+  +  +    ++P+  T  SVL AC   +    G
Sbjct: 161 SNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFG 220

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI------ 181
           K +H     +  + ++I+ NA++  Y +CG +     LF K+P+R+ VSW +MI      
Sbjct: 221 KEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASM 280

Query: 182 -----------------------------GGYAERGFCKEAVSVFQEMEKTKEAEPNEAT 212
                                        GGY   G  K A+ +  +M K   +  +   
Sbjct: 281 GMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCG-SHLDSVA 339

Query: 213 LVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 272
           L+  L ACS I     GK +HS+ + R      + V NA+I MY +C D+  A  +F ++
Sbjct: 340 LIIGLGACSHIGDAKLGKEIHSF-AIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLM 398

Query: 273 AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL 332
             K  I+W+++ISG        +A  L   M++  + P+ VT  +++  C+    +  G 
Sbjct: 399 EAKSLITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASVLPLCARVANLQHGK 458

Query: 333 ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
                M+   +    +  +  +VDMY R+G + EA 
Sbjct: 459 EFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEAR 494



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 147/291 (50%), Gaps = 10/291 (3%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIE--YGHLHDIFIQNSLLHFYVTV 58
           M  C S  +       L ACS     +   EIH+  I   +G +  +  +N+L+  Y   
Sbjct: 328 MRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTV--KNALITMYSRC 385

Query: 59  KDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEA---IDMFCGIDVKPNANTLVSVL 115
           KD+  A+ +F  +    +++W +IISG       +EA   +       ++PN  T+ SVL
Sbjct: 386 KDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASVL 445

Query: 116 SACSSLVSHKLGKAIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV 174
             C+ + + + GK  H +  R  + +++++L NA++D Y R G +     +F  + +R+ 
Sbjct: 446 PLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDK 505

Query: 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
           +++T+MI GY  +G  + A+ +F+EM    + +P+  T++ VLSACS    ++ G+ +  
Sbjct: 506 MTYTSMIAGYGMQGEGQAALKLFEEMNNF-QIKPDHITMIAVLSACSHSGLVTQGQLLFE 564

Query: 235 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS-WSTVI 284
            + + Y L+        + +++ + G +  A ++   + YK   + W+T+I
Sbjct: 565 KMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLI 615


>gi|293331391|ref|NP_001168246.1| uncharacterized protein LOC100382009 [Zea mays]
 gi|223946981|gb|ACN27574.1| unknown [Zea mays]
 gi|413932359|gb|AFW66910.1| hypothetical protein ZEAMMB73_426189 [Zea mays]
          Length = 499

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 148/450 (32%), Positives = 238/450 (52%), Gaps = 44/450 (9%)

Query: 9   NHYTFTQALKACSLAHPHQKALEI------HAHVIEYGHLHDIFIQNSLLHFYVTVKDIF 62
           +H + + +L AC+   P      +      H+  +  GH  D+++ N+ +  Y    D+ 
Sbjct: 71  DHISLSFSLHACARVVPTTSRYPLTVTGLLHSLALRLGHARDVYVANAAVSSYFAASDVA 130

Query: 63  SAHQIFNSVV--FPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSS 120
           SA ++F  V     DVV+WTT+++G +  G                              
Sbjct: 131 SADRLFAEVSTDVADVVTWTTMVTGHASAG------------------------------ 160

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
                LG+A   H    ++E N++  NA+L  Y R G L     LF  MP RN  +W+ M
Sbjct: 161 ----GLGRA--RHFFDAMSERNVVSWNAMLSAYARAGMLTEARDLFDAMPTRNAATWSCM 214

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           I G    G C EA+ +F +M  +    PNE  LV+V+SAC+ + +L  G +VH+Y     
Sbjct: 215 ISGLVLSGRCWEALGLFGDMVHSSGIVPNEPALVSVVSACAQMRSLEHGAWVHAYAEQEL 274

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
             ++S ++ +A+I+MY KCG +  AI+VF  +  ++  SW+ +I+GLAMNG  RQAL L 
Sbjct: 275 QGAMSVVLASAIIDMYGKCGGIHSAIRVFAAMPMRNIYSWNAMITGLAMNGGERQALSLL 334

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
             M +  V P+D+TFI L+SAC+H GLV++G  LF +M   + I P  QHY  +VD+ GR
Sbjct: 335 WKMQMVGVQPNDITFIGLLSACTHSGLVNEGRRLFDSMIEDFGIQPFPQHYGLMVDLIGR 394

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           +G + EA  F++ MP+E    +WGAL +AC++H   E+ + + + L+  +      + L+
Sbjct: 395 SGRVMEALYFVKSMPVEPHPGLWGALASACKMHGKVELGEEVAKKLIELEPRHGSRYILL 454

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGLKKKTG 450
           SN +   +RW+D   +R  ++R  + K TG
Sbjct: 455 SNLYGSVNRWDDMASVRKILKRRKVPKGTG 484


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 142/414 (34%), Positives = 234/414 (56%), Gaps = 11/414 (2%)

Query: 49  NSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNA 108
           N+++  Y    ++  A ++F      DV +WT ++SG  + G   EA  +F G+  K + 
Sbjct: 158 NTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSV 217

Query: 109 --NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLF 166
             N +++    C  +   +  +   A   +N++  N ++       Y + G +A     F
Sbjct: 218 SWNAIIAGYVQCKRMDQAR--ELFEAMPCQNVSSWNTMITG-----YAQNGDIAQARNFF 270

Query: 167 VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 226
            +MP+R+ +SW  +I GYA+ G+ +EA+ +F EM++  E   N +T  + LS C+ I+AL
Sbjct: 271 DRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGE-RLNRSTFTSTLSTCAEIAAL 329

Query: 227 SFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
             GK VH  +  +  L     VGNA++ MY KCG++  A  VF  +  K+ +SW+T+I+G
Sbjct: 330 ELGKQVHGRV-VKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAG 388

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 346
            A +G G++AL LF  M    + PDDVT + ++SACSH GLVD+G   F +M+  Y I  
Sbjct: 389 YARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITA 448

Query: 347 QMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDL 406
             +HY C++D+ GRAG L++A+  ++ MP E + + WGALL A RIH N E+ ++  + +
Sbjct: 449 NSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMI 508

Query: 407 VNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
              +  + G + L+SN +A + RW D  ++R  +R  G+KK  G SW+EV   I
Sbjct: 509 FEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKI 562



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 147/322 (45%), Gaps = 43/322 (13%)

Query: 46  FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK 105
           F++   L   V  +++ +A  +F+ +   DVVSW  ++SG ++ G+ KEA ++F   D  
Sbjct: 31  FLERHDLRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIF---DEM 87

Query: 106 PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNEN-NIILDNAILDFYIRCGSLASCGY 164
           P  N+ +S     ++ V +  G+   A  L     +  +I  N ++  Y++   L     
Sbjct: 88  PCKNS-ISWNGMLAAYVQN--GRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARG 144

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME-------------KTKEAEPNEA 211
           +F +MP+R+ VSW TMI GYA+ G   EA  +F+E                 +    +EA
Sbjct: 145 IFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEA 204

Query: 212 TLVNVLSACSSISALSFGKYVHSYIS-TRYD--------LSVSNLVG-NAVINMYVKCGD 261
               V       +++S+   +  Y+   R D        +   N+   N +I  Y + GD
Sbjct: 205 R--RVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGD 262

Query: 262 VGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISA 321
           +  A   F+ +  +D ISW+ +I+G A +G G +AL LF  M  +    +  TF + +S 
Sbjct: 263 IAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLST 322

Query: 322 CS-----------HGGLVDQGL 332
           C+           HG +V  GL
Sbjct: 323 CAEIAALELGKQVHGRVVKAGL 344



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 102/224 (45%), Gaps = 26/224 (11%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  TFT  L  C+     +   ++H  V++ G     ++ N+LL  Y    +I  A+ +F
Sbjct: 312 NRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVF 371

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   +VVSW T+I+G ++ GF KEA+ +F  +    + P+  T+V VLSACS      
Sbjct: 372 EGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVD 431

Query: 126 LGKAIHAHSLRNLNENNIILDNA-----ILDFYIRCGSLASCGYLFVKMP-KRNVVSWTT 179
            G         ++ ++  I  N+     ++D   R G L     L   MP + +  +W  
Sbjct: 432 KG----TEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGA 487

Query: 180 MIG-----GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLS 218
           ++G     G  E G  K A  +F       E EP+ + +  +LS
Sbjct: 488 LLGASRIHGNTELGE-KAAKMIF-------EMEPDNSGMYVLLS 523


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 150/426 (35%), Positives = 242/426 (56%), Gaps = 11/426 (2%)

Query: 35  HVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKE 94
           H+ +     D    N+LL  +    D   A ++F S+   DVVSW T++SGLSK G  +E
Sbjct: 119 HLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEE 178

Query: 95  AIDMFCGIDVKPNA--NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNEN-NIILDNAILD 151
           A  +F  + V+ +   N +VS   ACS  +S            RN  E  + +L  A++ 
Sbjct: 179 AKAVFLAMPVRNSVSWNAMVSGF-ACSRDMSAA------EEWFRNAPEKGDAVLWTAMVS 231

Query: 152 FYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEA 211
            Y+  G++      F  MP RN+VSW  ++ GY +     +A+ +F+ M +    +PN +
Sbjct: 232 GYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNAS 291

Query: 212 TLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 271
           TL +VL  CS++SAL FGK +H +   +  LS +  VG ++++MY KCGD+  A ++F  
Sbjct: 292 TLSSVLLGCSNLSALGFGKQIHQWC-MKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGE 350

Query: 272 LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
           +  +D ++W+ +ISG A +G G++A+ LF  M    V P+ +TF+A+++AC H GL D G
Sbjct: 351 MHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFG 410

Query: 332 LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACR 391
           +  F+ M  +Y I P++ HY+C+VD+  RAG LE A   IR MP E   S +G LL ACR
Sbjct: 411 IRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACR 470

Query: 392 IHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGC 451
           +++N E  +     L+ K   S G +  ++N +AGA++W+D +++R  ++   + K  G 
Sbjct: 471 VYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGY 530

Query: 452 SWIEVN 457
           SWIE+ 
Sbjct: 531 SWIEIK 536



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 94/225 (41%), Gaps = 37/225 (16%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T +  L  CS         +IH   ++     ++ +  SL+  Y    D+ SA ++F
Sbjct: 289 NASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLF 348

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   DVV+W  +ISG ++ G  KEAI++F  +    V+PN  T V+VL+AC       
Sbjct: 349 GEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTAC------- 401

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
               IH                 + DF IRC        L+   P+  V  ++ M+    
Sbjct: 402 ----IH---------------TGLCDFGIRC--FEGMQELYGIEPR--VDHYSCMVDLLC 438

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGK 230
             G  + AV + + M      EP+ +    +L+AC     L F +
Sbjct: 439 RAGKLERAVDLIRSM----PFEPHPSAYGTLLAACRVYKNLEFAE 479



 Score = 42.0 bits (97), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 59/320 (18%), Positives = 124/320 (38%), Gaps = 63/320 (19%)

Query: 154 IRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER-GFCKEAVSVFQEMEKTKEAEPNEA- 211
           +R G L      F   P++   ++  ++ GYA   G   +A  +F  +        N   
Sbjct: 77  VRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLL 136

Query: 212 ----------------------------TLVNVLSACSSI-------------SALSFGK 230
                                       T+V+ LS   ++             +++S+  
Sbjct: 137 SCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNA 196

Query: 231 YVHSYISTRYDLSVSN------------LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI 278
            V  +  +R D+S +             ++  A+++ Y+  G+V  AI+ F  +  ++ +
Sbjct: 197 MVSGFACSR-DMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLV 255

Query: 279 SWSTVISGLAMNGCGRQALQLFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKA 337
           SW+ V++G   N     AL+LF  M+  A V P+  T  +++  CS+   +  G  + + 
Sbjct: 256 SWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQW 315

Query: 338 MSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
              +  +   +     +V MY + G L  A     EM    +   W A+++    H + +
Sbjct: 316 CMKL-PLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR-DVVAWNAMISGYAQHGDGK 373

Query: 398 ----MFDRIRQDLVNKKGVS 413
               +F+R++ + V    ++
Sbjct: 374 EAINLFERMKDEGVEPNWIT 393


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 155/443 (34%), Positives = 254/443 (57%), Gaps = 35/443 (7%)

Query: 33  HAHVIEYGHLHDIFIQNSLLHFYV-TVKDIFS-------------AHQIFNSVVFPDVVS 78
           HAHV++ GH  D F++N+++  Y   V D  +             A  +F+ +   +V++
Sbjct: 48  HAHVLKLGHGSDAFVRNAVIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVIT 107

Query: 79  WTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNL 138
           WT +++G +K    + A   F   D  P  + +     + ++++S      +   +LR  
Sbjct: 108 WTAMVTGYAKVKDLEAARRYF---DCMPERSVV-----SWNAMLSGYAQNGLAEEALRLF 159

Query: 139 NE-----NNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
           +E      N +  NA++  Y+R G L S   LF  MP RNVV+W +MI GYA+ G    A
Sbjct: 160 DEMLGAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMA 219

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS-TRYDLSVSNLVGNAV 252
           + +F+EM   K+  P+E T+V+V+SAC  + AL  G +V  +++  +  LS+S    NA+
Sbjct: 220 IELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISG--HNAM 277

Query: 253 INMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD 312
           I MY +CG +  A +VF  +A +D +S++T+ISG A +G G +A+ L S M    + PD 
Sbjct: 278 IFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDR 337

Query: 313 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIR 372
           VTFI +++ACSH GL+++G  +F+++       P + HYAC+VD+ GR G LE+A+  + 
Sbjct: 338 VTFIGVLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKRTME 392

Query: 373 EMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWED 432
            MP+E    V+G+LLNA RIH+  E+ +     L   +  + G F L+SN +A A RW+D
Sbjct: 393 RMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKD 452

Query: 433 TNKIRDEIRRMGLKKKTGCSWIE 455
             +IR+ +++ G+KK TG SW+E
Sbjct: 453 VERIREAMKKGGVKKTTGWSWVE 475



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 142/289 (49%), Gaps = 29/289 (10%)

Query: 101 GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIR----- 155
           G  V+P+A     ++ +  +      G   HAH L+  + ++  + NA++D Y R     
Sbjct: 23  GCGVRPDAFVYPILIKSAGTG-----GIGFHAHVLKLGHGSDAFVRNAVIDMYARKVADW 77

Query: 156 ---------CGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
                      S     +LF  MP+RNV++WT M+ GYA+    + A   F  M +    
Sbjct: 78  NAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVV 137

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
             N        +  +  +   F + + +Y ++        +  NA+I+ Y++ GD+  A 
Sbjct: 138 SWNAMLSGYAQNGLAEEALRLFDEMLGAYRNS--------VTWNAMISAYMRVGDLDSAR 189

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII-NAVFPDDVTFIALISACSHG 325
           ++FN +  ++ ++W+++I+G A NG    A++LF  MI    + PD+VT +++ISAC H 
Sbjct: 190 KLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHL 249

Query: 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
           G ++ G  + + + T  +I   +  +  ++ MY R G +E+A+   +EM
Sbjct: 250 GALELGNWVVRFL-TENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEM 297


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  271 bits (694), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 148/433 (34%), Positives = 242/433 (55%), Gaps = 42/433 (9%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD----VVSWTTIISGLS 87
           +H  V++ G   D F++ SL+  YV + ++    Q+F+     +    ++ W  +I+G  
Sbjct: 160 LHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCC 219

Query: 88  KCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
           K G   +A  +F                                      + E N    N
Sbjct: 220 KVGDLSKAASLF------------------------------------EAMPERNAGSWN 243

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           ++++ ++R G L     LFV+MP++NVVSWTTMI G+++ G  ++A+S+F  M + +   
Sbjct: 244 SLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLE-EGVR 302

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
           PN+ T+V+ L AC+ I AL  G+ +H+Y+S+     ++  +G A+++MY KCG++  A +
Sbjct: 303 PNDLTVVSALLACTKIGALQVGERIHNYLSSN-GFQLNRGIGTALVDMYAKCGNIKSASR 361

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           VF     KD ++WS +I G A++GC  QALQ F  M    + PD+V F+A+++ACSH G 
Sbjct: 362 VFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGN 421

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           VDQGL  F++M   Y I P M+HY  +VD+ GRAG L+EA +FI+ MPI  ++ +WGAL 
Sbjct: 422 VDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALF 481

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
            ACR H+N EM +   + L+  +    G++  +SN +A   RWED  ++R  ++  G++K
Sbjct: 482 CACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEK 541

Query: 448 KTGCSWIEVNPSI 460
             G S+IEV   +
Sbjct: 542 DPGWSYIEVEGQV 554



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/313 (21%), Positives = 124/313 (39%), Gaps = 83/313 (26%)

Query: 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYV 232
           N+  +  +I G AE    + +VS F  M +     P+  TL  VL + +++  +  G+ +
Sbjct: 102 NLFVFNALIRGLAENSRFEGSVSHFVLMLRLS-IRPDRLTLPFVLKSVAALVDVGLGRCL 160

Query: 233 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI-------------- 278
           H  +  +  L   + V  ++++MYVK G++G  +Q+F+    ++K               
Sbjct: 161 HGGV-MKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCC 219

Query: 279 ---------------------SWSTVISGLAMNGCGRQALQLFSLM----------IIN- 306
                                SW+++I+G   NG   +A +LF  M          +IN 
Sbjct: 220 KVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMING 279

Query: 307 --------------------AVFPDDVTFIALISACSHGGLVDQGLILFKAMST-VYEIV 345
                                V P+D+T ++ + AC+  G +  G  +   +S+  +++ 
Sbjct: 280 FSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLN 339

Query: 346 PQMQHYACVVDMYGRAGLLEEAEAFIREMPIE--AEWSV--WGALLNACRIHRNDEMFDR 401
             +     +VDMY + G ++ A     E   +    WSV  WG  ++ C        FD+
Sbjct: 340 RGIG--TALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGC--------FDQ 389

Query: 402 IRQDLVNKKGVSV 414
             Q  V  K   +
Sbjct: 390 ALQCFVKMKSAGI 402



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 3/114 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T   AL AC+     Q    IH ++   G   +  I  +L+  Y    +I SA ++F
Sbjct: 304 NDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVF 363

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACS 119
                 D+++W+ +I G +  G   +A+  F  +    + P+    +++L+ACS
Sbjct: 364 VETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACS 417


>gi|296081839|emb|CBI20844.3| unnamed protein product [Vitis vinifera]
          Length = 700

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 149/450 (33%), Positives = 261/450 (58%), Gaps = 5/450 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  TF   LKA +           HA V++ G   D+F+  +L+  Y    DI    + F
Sbjct: 246 NDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIEDVERAF 305

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   ++VS+  +I+G S  G ++EA+ ++  +    ++P++ T V + S+CS   +  
Sbjct: 306 GEMSKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSVSSTVA 365

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G  +H HS++   ++++ + N+I++FY +CG   S    F  + + N V W  +I G+A
Sbjct: 366 EGAQVHVHSVKFGLDSDVSVGNSIVNFYSKCGFTDSALEAFESINRPNSVCWAGIISGFA 425

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G  ++A+  F +M K  + + +E +  +V+ A SS +A+  G+++H+++  +  L  +
Sbjct: 426 QNGEGEKALMQFCKMRKFID-KTDEFSSSSVIKAVSSWAAVEQGRHLHAHV-MKSGLDCT 483

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             VG+AVI+MY KCG V  A +VF+++  K+ +SW+++I+G A NG  ++AL LF  M  
Sbjct: 484 IYVGSAVIDMYSKCGMVEDAQKVFSVMPEKNVVSWNSMITGYAQNGFCKEALLLFQEMTS 543

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
           + + P  VTF+ ++ ACSH GLV++G   +  M   Y I P M+H  C+VD+ GRAG LE
Sbjct: 544 SGILPTAVTFVGILFACSHAGLVEEGRNFYNLMVHNYGIPPSMEHCTCMVDLLGRAGYLE 603

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EAEAF+       E  +WG+LL+AC +H+N ++  R  Q  +  +     ++  +SN +A
Sbjct: 604 EAEAFLLSSSFSKEPGIWGSLLSACGVHKNSDVGSRAAQHCLFLEPHYSSSYTALSNIYA 663

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
             + W + ++IRD ++ MG++K+ GCSWIE
Sbjct: 664 SKELWSEVSRIRDLMKDMGVEKEPGCSWIE 693



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 198/378 (52%), Gaps = 11/378 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML      N  T++  + AC+ +     A  +H  +++ G  + +F+ + L+  Y     
Sbjct: 32  MLRAGIEPNAITYSATISACAQSTRPSLATSLHCLILKKGFSNQLFVSSGLISMYSKHDR 91

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI-------DVKPNANTLVS 113
           I  A  +F+ +   D VSW ++I+G S+ G ++EA  +FC +        +  +  TL +
Sbjct: 92  IKEARFLFDDMPERDDVSWNSMIAGYSQRGLNEEACGLFCSMINSCENWKLLVSDFTLAT 151

Query: 114 VLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
           VL AC  L   ++GK +H ++++   ++++ +  + +  Y +CG L   G  F ++  ++
Sbjct: 152 VLKACGGLGCSRIGKCVHGYAVKIGFDSDLFVSGSTVYMYCKCGILDMAGLAFDQIENKD 211

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
           +V+W TMI GYA+  + +EA+ +F +ME  +  +PN+ T   VL A +++S  + G+  H
Sbjct: 212 IVAWNTMITGYAQNCYEEEAIELFYQME-LEGFKPNDTTFCCVLKASTAMSDSAVGRCFH 270

Query: 234 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG 293
           + +  +   S+   V  A+++MY K  D+    + F  ++ ++ +S++ +I+G ++ G  
Sbjct: 271 AKV-LKLGCSMDVFVATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNALITGYSLMGKY 329

Query: 294 RQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
            +AL+++S +    + PD  TF+ L S+CS    V +G  +    S  + +   +     
Sbjct: 330 EEALRVYSQLQSEGMEPDSFTFVGLFSSCSVSSTVAEGAQV-HVHSVKFGLDSDVSVGNS 388

Query: 354 VVDMYGRAGLLEEA-EAF 370
           +V+ Y + G  + A EAF
Sbjct: 389 IVNFYSKCGFTDSALEAF 406



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 96/216 (44%), Gaps = 33/216 (15%)

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           M + NVV WT+ I   A RG   +A+S F +M +    EPN  T    +SAC+  +  S 
Sbjct: 1   MLETNVVRWTSKITDNARRGLVDQALSCFLQMLRAG-IEPNAITYSATISACAQSTRPSL 59

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
              +H  I  +   S    V + +I+MY K   +  A  +F+ +  +D +SW+++I+G +
Sbjct: 60  ATSLHCLI-LKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYS 118

Query: 289 MNGCGRQALQLFSLMIINA----VFPDDVTFIALISACS-----------HGGLVDQGL- 332
             G   +A  LF  MI +     +   D T   ++ AC            HG  V  G  
Sbjct: 119 QRGLNEEACGLFCSMINSCENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFD 178

Query: 333 -ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
             LF + STVY              MY + G+L+ A
Sbjct: 179 SDLFVSGSTVY--------------MYCKCGILDMA 200


>gi|357114151|ref|XP_003558864.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic-like [Brachypodium distachyon]
          Length = 782

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 152/450 (33%), Positives = 257/450 (57%), Gaps = 11/450 (2%)

Query: 16  ALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 75
           AL AC L     +  E+HA+VI +G   D+ +  SLL  Y     I SA  +F ++    
Sbjct: 216 ALAACCLDSALMQGREVHAYVIRHGLEQDVKVGTSLLDMYCKCGAIASAEGMFATMPSRT 275

Query: 76  VVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN-----TLVSVLSACSSLVSHKLGKAI 130
           VV+W  +I G +  G  +EA D  C + +K   +     T +++L+AC+   S   G+++
Sbjct: 276 VVTWNCMIGGYALNGCPEEAFD--CFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSV 333

Query: 131 HAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFC 190
           H +  R+    +++L+ A+L+ Y + G + S   +F +M  + +VSW  MI  Y  +   
Sbjct: 334 HGYVTRSQFLPHVVLETALLEMYSKVGKVKSSETIFGQMTNKTLVSWNNMIAAYMYKEMY 393

Query: 191 KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGN 250
            EA+++F E+   +   P+  T+  V+ A   +  L   + +HSYI  R D   + LV N
Sbjct: 394 NEAITLFLEL-LNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYI-VRLDYGENTLVTN 451

Query: 251 AVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP 310
           AV++MY +CGDV  + ++F+ +A KD ISW+T+I G A++G G+ AL++FS M  N + P
Sbjct: 452 AVMHMYARCGDVVSSRKIFDKMAGKDVISWNTIIMGYAIHGQGKIALEMFSEMKSNGLQP 511

Query: 311 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAF 370
           ++ TF+++++ACS  G+ D+G I F  M   Y I+PQ++HY C+ D+ GRAG L E   F
Sbjct: 512 NESTFVSVLTACSVSGMADEGWIQFNLMQRDYGIIPQIEHYGCMTDLLGRAGDLREVLKF 571

Query: 371 IREMPIEAEWSVWGALLNACRIHRND-EMFDRIRQDLVNKKGVSVGTFALMSNTFAGADR 429
           I  +PI   + +WG+LL A R +RND ++ +   + +   +  + G + ++S+ +A A R
Sbjct: 572 IESIPITPTFRIWGSLLTASR-NRNDIDIAEYAAERIFELEHDNTGCYVILSSMYADAGR 630

Query: 430 WEDTNKIRDEIRRMGLKKKTGCSWIEVNPS 459
           WED  +IR  +   GL++    S +E++ S
Sbjct: 631 WEDVQRIRSSMMEKGLRRTDARSIVELHGS 660



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 174/335 (51%), Gaps = 7/335 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHL-HDIFIQNSLLHFYVTVK 59
           ML+  +  + +TF   +K C+     ++    H+  I  G +  +++  NSLL FY  + 
Sbjct: 98  MLAAGARPDRFTFPVVVKCCARLGALEEGRAAHSAAIRLGLVGSEVYTGNSLLAFYAKLG 157

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC----GIDVKPNANTLVSVL 115
            +  A ++F+ +   D+V+W +++ G    G    A+D F     G+ V+ +   +++ L
Sbjct: 158 MVADAERVFDGMPVRDIVTWNSMVDGYVSNGLGALALDCFREMHEGLQVQHDGVGIIAAL 217

Query: 116 SACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVV 175
           +AC    +   G+ +HA+ +R+  E ++ +  ++LD Y +CG++AS   +F  MP R VV
Sbjct: 218 AACCLDSALMQGREVHAYVIRHGLEQDVKVGTSLLDMYCKCGAIASAEGMFATMPSRTVV 277

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           +W  MIGGYA  G  +EA   F +M K +  +    T +N+L+AC+   +  +G+ VH Y
Sbjct: 278 TWNCMIGGYALNGCPEEAFDCFVQM-KAEGHQVEVVTAINLLAACAQTESSLYGRSVHGY 336

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
           + TR       ++  A++ MY K G V  +  +F  +  K  +SW+ +I+         +
Sbjct: 337 V-TRSQFLPHVVLETALLEMYSKVGKVKSSETIFGQMTNKTLVSWNNMIAAYMYKEMYNE 395

Query: 296 ALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQ 330
           A+ LF  ++   ++PD  T  A++ A    GL+ Q
Sbjct: 396 AITLFLELLNQPLYPDYFTMSAVVPAFVLLGLLRQ 430



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 71/122 (58%), Gaps = 3/122 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           +L+ P   +++T +  + A  L    ++  ++H++++   +  +  + N+++H Y    D
Sbjct: 403 LLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIVRLDYGENTLVTNAVMHMYARCGD 462

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           + S+ +IF+ +   DV+SW TII G +  G  K A++MF  +    ++PN +T VSVL+A
Sbjct: 463 VVSSRKIFDKMAGKDVISWNTIIMGYAIHGQGKIALEMFSEMKSNGLQPNESTFVSVLTA 522

Query: 118 CS 119
           CS
Sbjct: 523 CS 524


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 150/481 (31%), Positives = 252/481 (52%), Gaps = 46/481 (9%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           L ACS     +    IH   +++G + D+F+  +L++ Y     +  A  +F+ +   +V
Sbjct: 350 LPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNV 409

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAH 133
           V+W ++ S    CGF ++ +++F  +    VKP+  T++S+L ACS L   K GK IH  
Sbjct: 410 VTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGF 469

Query: 134 SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV------------------- 174
           ++R+    ++ + NA+L  Y +C  +     +F  +P R V                   
Sbjct: 470 AVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKG 529

Query: 175 ----------------VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLS 218
                           ++W+ +IGG  +    +EA+ +F++M+ T   +P+E T+ ++L 
Sbjct: 530 LYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQ-TMGFKPDETTIYSILR 588

Query: 219 ACSSISALSFGKYVHSYISTRY---DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           ACS    L  GK +H Y+   +   DL+ +N    A+++MY KCG + ++  VF+M+  K
Sbjct: 589 ACSLSECLRMGKEIHCYVFRHWKDWDLARTN----ALVDMYAKCGGLSLSRNVFDMMPIK 644

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILF 335
           D  SW+T+I    M+G G++AL LF  M+++ V PD  TF  ++SACSH  LV++G+ +F
Sbjct: 645 DVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIF 704

Query: 336 KAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN 395
            +MS  + + P+ +HY CVVD+Y RAG LEEA  FI+ MP+E     W A L  CR+++N
Sbjct: 705 NSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYKN 764

Query: 396 DEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
            E+     + L          +  + N    A  W + +KIR  ++  G+ K  GCSW  
Sbjct: 765 VELAKISAKKLFEIDPNGSANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPGCSWFH 824

Query: 456 V 456
           V
Sbjct: 825 V 825



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 116/445 (26%), Positives = 228/445 (51%), Gaps = 14/445 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T +  L  CS     +   EIH  V+ +G + D+F+ ++ ++FY     +  A  +F
Sbjct: 140 NPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVF 199

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           + +   DVV+W ++ S    CGF ++ +++F  +    VKP+  T+  +LSACS L   K
Sbjct: 200 DLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLK 259

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GKAIH  +L++    N+ + NA+++ Y  C  +     +F  MP RNV++W ++   Y 
Sbjct: 260 SGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYV 319

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             GF ++ ++VF+EM      +P+   + ++L ACS +  L  GK +H + + ++ +   
Sbjct: 320 NCGFPQKGLNVFREM-GLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGF-AVKHGMVED 377

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V  A++N+Y  C  V  A  VF+++ +++ ++W+++ S     G  ++ L +F  M++
Sbjct: 378 VFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVL 437

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
           N V PD VT ++++ ACS    +  G ++    +  + +V  +     ++ +Y +   + 
Sbjct: 438 NGVKPDLVTMLSILHACSDLQDLKSGKVI-HGFAVRHGMVEDVFVCNALLSLYAKCVCVR 496

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDRIRQDLVNKKGVSVGTFALMS 421
           EA+     +P   E + W  +L A   ++  E    MF ++ +D V    +   T++++ 
Sbjct: 497 EAQVVFDLIP-HREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEI---TWSVVI 552

Query: 422 NTFAGADRWEDTNKIRDEIRRMGLK 446
                  R E+  +I  +++ MG K
Sbjct: 553 GGCVKNSRIEEAMEIFRKMQTMGFK 577



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 190/366 (51%), Gaps = 6/366 (1%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           F    KAC+ +    K  + H      G + D+ I N+ +H Y   K +  A ++F+ +V
Sbjct: 43  FMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAFIHAYGKCKCVEGARRVFDDLV 102

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMF--CGID-VKPNANTLVSVLSACSSLVSHKLGKA 129
             DVV+W ++ +    CGF ++ +++F   G++ VK N  T+ S+L  CS L   K GK 
Sbjct: 103 ARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKE 162

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           IH   +R+    ++ + +A ++FY +C  +     +F  MP R+VV+W ++   Y   GF
Sbjct: 163 IHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGF 222

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
            ++ ++VF+EM      +P+  T+  +LSACS +  L  GK +H + + ++ +  +  V 
Sbjct: 223 PQKGLNVFREM-VLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGF-ALKHGMVENVFVS 280

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
           NA++N+Y  C  V  A  VF+++ +++ I+W+++ S     G  ++ L +F  M +N V 
Sbjct: 281 NALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVK 340

Query: 310 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEA 369
           PD +   +++ ACS    +  G  +    +  + +V  +     +V++Y     + EA+ 
Sbjct: 341 PDPMAMSSILPACSQLKDLKSGKTI-HGFAVKHGMVEDVFVCTALVNLYANCLCVREAQT 399

Query: 370 FIREMP 375
               MP
Sbjct: 400 VFDLMP 405



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 142/289 (49%), Gaps = 6/289 (2%)

Query: 90  GFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
           G   EAI ++       +KP+    ++V  AC++       K  H  + R    +++ + 
Sbjct: 19  GLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIG 78

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           NA +  Y +C  +     +F  +  R+VV+W ++   Y   GF ++ ++VF++M   K  
Sbjct: 79  NAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNK-V 137

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
           + N  T+ ++L  CS +  L  GK +H ++  R+ +     V +A +N Y KC  V  A 
Sbjct: 138 KANPLTVSSILPGCSDLQDLKSGKEIHGFV-VRHGMVEDVFVSSAFVNFYAKCLCVREAQ 196

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
            VF+++ ++D ++W+++ S     G  ++ L +F  M+++ V PD VT   ++SACS   
Sbjct: 197 TVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQ 256

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP 375
            +  G  +    +  + +V  +     +V++Y     + EA+A    MP
Sbjct: 257 DLKSGKAI-HGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMP 304



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 96/217 (44%), Gaps = 10/217 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +  T    L+ACSL+   +   EIH +V  +    D+   N+L+  Y     +  +  +F
Sbjct: 579 DETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVF 638

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS-SLVSH 124
           + +   DV SW T+I      G  KEA+ +F  +    VKP++ T   VLSACS S++  
Sbjct: 639 DMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVE 698

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIGG 183
           +  +  ++ S  +L E        ++D Y R G L        +MP +   ++W   + G
Sbjct: 699 EGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAG 758

Query: 184 ---YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVL 217
              Y      K +     E++    A  N  TL N+L
Sbjct: 759 CRVYKNVELAKISAKKLFEIDPNGSA--NYVTLFNIL 793


>gi|357142117|ref|XP_003572465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 613

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 159/479 (33%), Positives = 259/479 (54%), Gaps = 37/479 (7%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +T +  LKA +     ++  ++H HV + G   D  I  +L+  Y     +  A ++F+ 
Sbjct: 105 FTVSSVLKAAARREMLREGEQVHVHVFKNGFQTDERIATTLVDLYARCGRLDDARRVFDR 164

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANT-----LVSVLSA-------- 117
           ++  D   + T+I+   + G  + A ++F   +V P  NT     +V   SA        
Sbjct: 165 LLVKDAQLYNTMIAAYMEAGEVELAEELF---EVMPERNTHTLMEMVGGYSARGDMDSAK 221

Query: 118 --------------CSSLVSH--KLGKAIHAHSL-RNLNENNIILDNAILD-FYIRCGSL 159
                         C++++S   K G    A S+   + + ++   N ++   Y +CG +
Sbjct: 222 HVFEMANGVVNMVLCTAMISGFAKTGSVDDARSVFDGMRQRDVATWNVMIGVMYAKCGLV 281

Query: 160 ASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
                +F  MP+RNVV WT+MI GY + G  K+AV +F++M+ +   + ++AT+  V+S+
Sbjct: 282 EDARKVFDAMPERNVVCWTSMISGYTQVGKFKQAVKLFRDMQISG-VKADDATIATVVSS 340

Query: 220 CSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS 279
           C  + AL  G+YVH+Y    + L     V N++I+MY KCGD+  A ++F  L  +D  S
Sbjct: 341 CGQMGALDLGRYVHAYCDV-HGLGKGISVKNSLIDMYSKCGDIKKAHEIFRGLVKRDDFS 399

Query: 280 WSTVISGLAMNGCGRQALQLFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAM 338
           W+ +I G A+NG   +AL LF+ M     V P+++TF+ ++++CSHGGLV+QG   F  M
Sbjct: 400 WTVMIMGFAVNGLSGEALDLFAQMEEEGEVMPNEITFLGVLTSCSHGGLVEQGYHHFHRM 459

Query: 339 STVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEM 398
           S VY I P+++HY C+VD+ GRA LL EAE FI EMPI  + ++W +LL ACR      +
Sbjct: 460 SKVYGIAPRIEHYGCMVDLLGRAKLLAEAEQFIEEMPIAPDVAIWRSLLFACRARGEVGL 519

Query: 399 FDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            + + + +   +    G   L+SN +A   RW D NK+R  + R  + K+ GCS IEVN
Sbjct: 520 AEYVAERVEELEPSRCGGNVLLSNVYATTSRWVDVNKVRTGMGRSRVSKRPGCSVIEVN 578



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 139/312 (44%), Gaps = 35/312 (11%)

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCG 163
           V+P   T+ SVL A +     + G+ +H H  +N  + +  +   ++D Y RCG L    
Sbjct: 100 VRPLTFTVSSVLKAAARREMLREGEQVHVHVFKNGFQTDERIATTLVDLYARCGRLDDAR 159

Query: 164 YLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI 223
            +F ++  ++   + TMI  Y E G  + A  +F+ M      E N  TL+ ++   S+ 
Sbjct: 160 RVFDRLLVKDAQLYNTMIAAYMEAGEVELAEELFEVM-----PERNTHTLMEMVGGYSAR 214

Query: 224 SALSFGKYVHSYISTRYDL-----SVSNLVGNAVIN-----------------------M 255
             +   K+V    +   ++      +S       ++                       M
Sbjct: 215 GDMDSAKHVFEMANGVVNMVLCTAMISGFAKTGSVDDARSVFDGMRQRDVATWNVMIGVM 274

Query: 256 YVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTF 315
           Y KCG V  A +VF+ +  ++ + W+++ISG    G  +QA++LF  M I+ V  DD T 
Sbjct: 275 YAKCGLVEDARKVFDAMPERNVVCWTSMISGYTQVGKFKQAVKLFRDMQISGVKADDATI 334

Query: 316 IALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP 375
             ++S+C   G +D G  +  A   V+ +   +     ++DMY + G +++A    R + 
Sbjct: 335 ATVVSSCGQMGALDLGRYV-HAYCDVHGLGKGISVKNSLIDMYSKCGDIKKAHEIFRGLV 393

Query: 376 IEAEWSVWGALL 387
              ++S W  ++
Sbjct: 394 KRDDFS-WTVMI 404


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 143/415 (34%), Positives = 235/415 (56%), Gaps = 13/415 (3%)

Query: 49  NSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNA 108
           N+++  Y    ++  A ++F      DV +WT ++SG  + G   EA  +F G+  K + 
Sbjct: 239 NTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSV 298

Query: 109 --NTLVSVLSACSSL-VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYL 165
             N +++    C  +  + +L +A+           N+   N ++  Y + G +A     
Sbjct: 299 SWNAIIAGYVQCKRMDQARELFEAMPCQ--------NVSSWNTMITGYAQNGDIAQARNF 350

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
           F +MP+R+ +SW  +I GYA+ G+ +EA+ +F EM++  E   N +T  + LS C+ I+A
Sbjct: 351 FDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGE-RLNRSTFTSTLSTCAEIAA 409

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285
           L  GK VH  +  +  L     VGNA++ MY KCG++  A  VF  +  K+ +SW+T+I+
Sbjct: 410 LELGKQVHGRV-VKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIA 468

Query: 286 GLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 345
           G A +G G++AL LF  M    + PDDVT + ++SACSH GLVD+G   F +M+  Y I 
Sbjct: 469 GYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGIT 528

Query: 346 PQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQD 405
              +HY C++D+ GRAG L++A+  ++ MP E + + WGALL A RIH N E+ ++  + 
Sbjct: 529 ANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKM 588

Query: 406 LVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +   +  + G + L+SN +A + RW D  ++R  +R  G+KK  G SW+EV   I
Sbjct: 589 IFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKI 643



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 149/325 (45%), Gaps = 43/325 (13%)

Query: 43  HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI 102
            D+   N ++   V  +++ +A  +F+ +   DVVSW  ++SG ++ G+ KEA ++F   
Sbjct: 109 RDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIF--- 165

Query: 103 DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSL-RNLNENNIILDNAILDFYIRCGSLAS 161
           D  P  N+ +S     ++ V +  G+   A  L  +  +  +I  N ++  Y++   L  
Sbjct: 166 DEMPCKNS-ISWNGMLAAYVQN--GRIEDARRLFESKADWELISWNCMMGGYVKRNRLVD 222

Query: 162 CGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME-------------KTKEAEP 208
              +F +MP+R+ VSW TMI GYA+ G   EA  +F+E                 +    
Sbjct: 223 ARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGML 282

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYIS-TRYD--------LSVSNLVG-NAVINMYVK 258
           +EA    V       +++S+   +  Y+   R D        +   N+   N +I  Y +
Sbjct: 283 DEAR--RVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQ 340

Query: 259 CGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIAL 318
            GD+  A   F+ +  +D ISW+ +I+G A +G G +AL LF  M  +    +  TF + 
Sbjct: 341 NGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTST 400

Query: 319 ISACS-----------HGGLVDQGL 332
           +S C+           HG +V  GL
Sbjct: 401 LSTCAEIAALELGKQVHGRVVKAGL 425



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 151/334 (45%), Gaps = 29/334 (8%)

Query: 75  DVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHS 134
           D+V W   I+   + G    A+ +F  +  + +  +  +++S C S     L + +    
Sbjct: 48  DIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSI-SWNAMISGCLSNDKFYLARQL---- 102

Query: 135 LRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAV 194
              +   +++  N ++   +R  +L +   LF +MP+R+VVSW  M+ GYA+ G+ KEA 
Sbjct: 103 FEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAK 162

Query: 195 SVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVIN 254
            +F EM        N  +   +L+A      +   + +     ++ D  +  +  N ++ 
Sbjct: 163 EIFDEMPCK-----NSISWNGMLAAYVQNGRIEDARRL---FESKADWEL--ISWNCMMG 212

Query: 255 MYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVT 314
            YVK   +  A  +F+ +  +D++SW+T+ISG A NG   +A +LF    +  VF    T
Sbjct: 213 GYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVF----T 268

Query: 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
           + A++S     G++D+   +F  M     +      +  ++  Y +   +++A      M
Sbjct: 269 WTAMVSGYVQNGMLDEARRVFDGMPEKNSV-----SWNAIIAGYVQCKRMDQARELFEAM 323

Query: 375 PIEAEWSVWGALLNA----CRIHRNDEMFDRIRQ 404
           P +   S W  ++        I +    FDR+ Q
Sbjct: 324 PCQ-NVSSWNTMITGYAQNGDIAQARNFFDRMPQ 356



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 102/224 (45%), Gaps = 26/224 (11%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  TFT  L  C+     +   ++H  V++ G     ++ N+LL  Y    +I  A+ +F
Sbjct: 393 NRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVF 452

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   +VVSW T+I+G ++ GF KEA+ +F  +    + P+  T+V VLSACS      
Sbjct: 453 EGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVD 512

Query: 126 LGKAIHAHSLRNLNENNIILDNA-----ILDFYIRCGSLASCGYLFVKMP-KRNVVSWTT 179
            G         ++ ++  I  N+     ++D   R G L     L   MP + +  +W  
Sbjct: 513 KG----TEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGA 568

Query: 180 MIG-----GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLS 218
           ++G     G  E G  K A  +F       E EP+ + +  +LS
Sbjct: 569 LLGASRIHGNTELGE-KAAKMIF-------EMEPDNSGMYVLLS 604



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 126/284 (44%), Gaps = 34/284 (11%)

Query: 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYV 232
           ++V W   I  +   G C  A+ +F  M +      N      ++S C S       + +
Sbjct: 48  DIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNA-----MISGCLSNDKFYLARQL 102

Query: 233 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
              + TR DL    +  N +I+  V+  ++  A  +F+ +  +D +SW+ ++SG A NG 
Sbjct: 103 FEKMPTR-DL----VSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGY 157

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
            ++A ++F  M       + +++  +++A    G ++    LF++ +  +E++     + 
Sbjct: 158 VKEAKEIFDEMPCK----NSISWNGMLAAYVQNGRIEDARRLFESKAD-WELIS----WN 208

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           C++  Y +   L +A      MP   E S W  +++     +N E+ +   Q L  +  V
Sbjct: 209 CMMGGYVKRNRLVDARGIFDRMPERDEVS-WNTMISG--YAQNGELLE--AQRLFEESPV 263

Query: 413 -SVGTFALMSNTFAGADRWEDTNKIRDEIRRM--GLKKKTGCSW 453
             V T+  M + +         N + DE RR+  G+ +K   SW
Sbjct: 264 RDVFTWTAMVSGYV-------QNGMLDEARRVFDGMPEKNSVSW 300


>gi|297607983|ref|NP_001061009.2| Os08g0153600 [Oryza sativa Japonica Group]
 gi|255678154|dbj|BAF22923.2| Os08g0153600 [Oryza sativa Japonica Group]
          Length = 551

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 150/426 (35%), Positives = 242/426 (56%), Gaps = 11/426 (2%)

Query: 35  HVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKE 94
           H+ +     D    N+LL  +    D   A ++F S+   DVVSW T++SGLSK G  +E
Sbjct: 70  HLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEE 129

Query: 95  AIDMFCGIDVKPNA--NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNEN-NIILDNAILD 151
           A  +F  + V+ +   N +VS   ACS  +S            RN  E  + +L  A++ 
Sbjct: 130 AKAVFLAMPVRNSVSWNAMVSGF-ACSRDMSAA------EEWFRNAPEKGDAVLWTAMVS 182

Query: 152 FYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEA 211
            Y+  G++      F  MP RN+VSW  ++ GY +     +A+ +F+ M +    +PN +
Sbjct: 183 GYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNAS 242

Query: 212 TLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 271
           TL +VL  CS++SAL FGK +H +   +  LS +  VG ++++MY KCGD+  A ++F  
Sbjct: 243 TLSSVLLGCSNLSALGFGKQIHQWC-MKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGE 301

Query: 272 LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
           +  +D ++W+ +ISG A +G G++A+ LF  M    V P+ +TF+A+++AC H GL D G
Sbjct: 302 MHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFG 361

Query: 332 LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACR 391
           +  F+ M  +Y I P++ HY+C+VD+  RAG LE A   IR MP E   S +G LL ACR
Sbjct: 362 IRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACR 421

Query: 392 IHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGC 451
           +++N E  +     L+ K   S G +  ++N +AGA++W+D +++R  ++   + K  G 
Sbjct: 422 VYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGY 481

Query: 452 SWIEVN 457
           SWIE+ 
Sbjct: 482 SWIEIK 487



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 94/225 (41%), Gaps = 37/225 (16%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T +  L  CS         +IH   ++     ++ +  SL+  Y    D+ SA ++F
Sbjct: 240 NASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLF 299

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   DVV+W  +ISG ++ G  KEAI++F  +    V+PN  T V+VL+AC       
Sbjct: 300 GEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTAC------- 352

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
               IH                 + DF IRC        L+   P+  V  ++ M+    
Sbjct: 353 ----IH---------------TGLCDFGIRC--FEGMQELYGIEPR--VDHYSCMVDLLC 389

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGK 230
             G  + AV + + M      EP+ +    +L+AC     L F +
Sbjct: 390 RAGKLERAVDLIRSM----PFEPHPSAYGTLLAACRVYKNLEFAE 430



 Score = 41.6 bits (96), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 59/320 (18%), Positives = 124/320 (38%), Gaps = 63/320 (19%)

Query: 154 IRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER-GFCKEAVSVFQEMEKTKEAEPNEA- 211
           +R G L      F   P++   ++  ++ GYA   G   +A  +F  +        N   
Sbjct: 28  VRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLL 87

Query: 212 ----------------------------TLVNVLSACSSI-------------SALSFGK 230
                                       T+V+ LS   ++             +++S+  
Sbjct: 88  SCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNA 147

Query: 231 YVHSYISTRYDLSVSN------------LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI 278
            V  +  +R D+S +             ++  A+++ Y+  G+V  AI+ F  +  ++ +
Sbjct: 148 MVSGFACSR-DMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLV 206

Query: 279 SWSTVISGLAMNGCGRQALQLFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKA 337
           SW+ V++G   N     AL+LF  M+  A V P+  T  +++  CS+   +  G  + + 
Sbjct: 207 SWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQW 266

Query: 338 MSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
              +  +   +     +V MY + G L  A     EM    +   W A+++    H + +
Sbjct: 267 CMKL-PLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR-DVVAWNAMISGYAQHGDGK 324

Query: 398 ----MFDRIRQDLVNKKGVS 413
               +F+R++ + V    ++
Sbjct: 325 EAINLFERMKDEGVEPNWIT 344


>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
          Length = 1984

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 152/469 (32%), Positives = 253/469 (53%), Gaps = 43/469 (9%)

Query: 30  LEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
           +++   V +     D+    ++L  YV   D+  A +IF+ +   + +SW+ +I+  S+ 
Sbjct: 235 IDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQS 294

Query: 90  GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
           G+ +EA+ +F  +     KPN +     LSA +SL +   G  IH H  +   + ++ + 
Sbjct: 295 GYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIG 354

Query: 147 NAILDFYIRCGSLASCGYLF-------------------------------VKMPKRNVV 175
           ++++D Y +CG       +F                                 +P++N V
Sbjct: 355 SSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDV 414

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           SW T+I GY E   C++ + VF  +  + +  PN++T  +VL AC+SI++L  G  VH  
Sbjct: 415 SWGTIIAGYLENEQCEKVLEVFNTLLVSGQT-PNKSTFSSVLCACASIASLDKGMNVHGK 473

Query: 236 I---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
           I     +YD+     VG A+ +MY KCGD+G + QVF  +  K++ISW+ +I GLA +G 
Sbjct: 474 IIKLGIQYDI----FVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGF 529

Query: 293 GRQALQLFSLM-IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY 351
             ++L LF  M   + V P+++  ++++ ACSH GLVD+GL  F +M  VY I P+ +HY
Sbjct: 530 AVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHY 589

Query: 352 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKG 411
            CVVD+  R+G L EAE FIR +P + E + W ALL+ C+ ++++++ +R  + L     
Sbjct: 590 TCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQLAE 649

Query: 412 VSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            +   + L+SN +A A RW D + IR  +R  GLKK  GCSW+EV   +
Sbjct: 650 NNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEVRNQV 698



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 176/385 (45%), Gaps = 76/385 (19%)

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSH 124
           F    F +VVSWT  ISG  + G + EA+ +F  +    V+PN  T  SV+ AC  L   
Sbjct: 141 FERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDF 200

Query: 125 KLGKAI----------HAHSLRN---------------------LNENNIILDNAILDFY 153
            LG +I          H  S+ N                     + + +++   AILD Y
Sbjct: 201 GLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAY 260

Query: 154 IRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATL 213
           +  G L     +F +MP+RN +SW+ MI  Y++ G+ +EA+ +F +M + +  +PN +  
Sbjct: 261 VETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQ-EGFKPNISCF 319

Query: 214 VNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM-- 271
              LSA +S+ ALS G  +H ++ T+  +     +G+++I++Y KCG       VF++  
Sbjct: 320 ACTLSALASLRALSAGINIHGHV-TKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLIL 378

Query: 272 -----------------------------LAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
                                        +  K+ +SW T+I+G   N    + L++F+ 
Sbjct: 379 EKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNT 438

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFK---AMSTVYEIVPQMQHYACVVDMYG 359
           ++++   P+  TF +++ AC+    +D+G+ +      +   Y+I         + DMY 
Sbjct: 439 LLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVG----TALTDMYA 494

Query: 360 RAGLLEEAEAFIREMPIEAE--WSV 382
           + G +  ++     MP + E  W+V
Sbjct: 495 KCGDIGSSKQVFERMPEKNEISWTV 519



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 139/293 (47%), Gaps = 35/293 (11%)

Query: 29  ALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
            + IH HV + G   D+FI +SL+  Y           +F+ ++  +VV W +++ G S 
Sbjct: 335 GINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSI 394

Query: 89  CGFH-------------------------------KEAIDMFCGIDVK---PNANTLVSV 114
            G                                 ++ +++F  + V    PN +T  SV
Sbjct: 395 NGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSV 454

Query: 115 LSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV 174
           L AC+S+ S   G  +H   ++   + +I +  A+ D Y +CG + S   +F +MP++N 
Sbjct: 455 LCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNE 514

Query: 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
           +SWT MI G AE GF  E++ +F+EME+T E  PNE  L++VL ACS    +  G +  +
Sbjct: 515 ISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFN 574

Query: 235 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI-SWSTVISG 286
            +   Y +         V+++  + G +  A +    + ++ +  +W+ ++SG
Sbjct: 575 SMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSG 627



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 87/415 (20%), Positives = 170/415 (40%), Gaps = 69/415 (16%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           +HAH+I+ G     +I   LL  Y+  +      QI       D+V    +IS   + G 
Sbjct: 43  LHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQWGN 102

Query: 92  HKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILD 151
             +A  +F   D  P                                 E N +  +A++ 
Sbjct: 103 LVQARLLF---DEMP---------------------------------ERNEVSWSALIS 126

Query: 152 FYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEA 211
             ++ G +    + F + P +NVVSWT  I G+   G   EA+ +F  + ++    PN+ 
Sbjct: 127 GLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESG-VRPNDV 185

Query: 212 TLVNVLSACSSISALSFGKYVHSYIST---RYDLSVSN---------------------- 246
           T  +V+ AC  +     G  +   +      + LSVSN                      
Sbjct: 186 TFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRM 245

Query: 247 -----LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
                +   A+++ YV+ GD+  A ++F+ +  +++ISWS +I+  + +G   +AL+LFS
Sbjct: 246 EKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFS 305

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            M+     P+   F   +SA +    +  G+ +   ++ +  I   +   + ++D+Y + 
Sbjct: 306 KMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKI-GIDKDVFIGSSLIDLYCKC 364

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGT 416
           G  ++    + ++ +E     W +++    I+   E  + + + +  K  VS GT
Sbjct: 365 GKPDDGR-LVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGT 418



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 4/123 (3%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           +L    + N  TF+  L AC+      K + +H  +I+ G  +DIF+  +L   Y    D
Sbjct: 439 LLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGD 498

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLS 116
           I S+ Q+F  +   + +SWT +I GL++ GF  E++ +F  +    +V PN   L+SVL 
Sbjct: 499 IGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLF 558

Query: 117 ACS 119
           ACS
Sbjct: 559 ACS 561



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 120/312 (38%), Gaps = 76/312 (24%)

Query: 108 ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFV 167
           A T VS+L   S+      G  +HAH ++    +   +   +L  Y+ C   A    +  
Sbjct: 21  AQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVK 80

Query: 168 KMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 227
           +    ++V    MI  Y + G   +A  +F EM      E NE +               
Sbjct: 81  EFDGSDLVVSNCMISAYVQWGNLVQARLLFDEM-----PERNEVSW-------------- 121

Query: 228 FGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGL 287
                                 +A+I+  +K G V  ++  F    +++ +SW+  ISG 
Sbjct: 122 ----------------------SALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGF 159

Query: 288 AMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL------ILFKA---- 337
             NG   +AL+LF  ++ + V P+DVTF +++ AC  G L D GL      ++ KA    
Sbjct: 160 VRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRAC--GELGDFGLGMSILGLVVKAGFEH 217

Query: 338 -----------------MSTVYEIVPQMQH-----YACVVDMYGRAGLLEEAEAFIREMP 375
                            +     +  +M+      +  ++D Y   G L EA     EMP
Sbjct: 218 YLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMP 277

Query: 376 IEAEWSVWGALL 387
              E S W A++
Sbjct: 278 ERNEIS-WSAMI 288


>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 145/440 (32%), Positives = 256/440 (58%), Gaps = 7/440 (1%)

Query: 23  AHPHQKALE-IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTT 81
           A PH + L+  HAH++  G      +   LL        I    ++F SV  PD   + +
Sbjct: 19  AGPHLRRLQQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNS 78

Query: 82  IISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNL 138
           +I   S  GF  +A+  +  +    + P+  T  SV+ AC+ L   +LG  +H+H   + 
Sbjct: 79  LIKASSNFGFSLDAVFFYRRMLHSRIVPSTYTFTSVIKACADLSLLRLGTIVHSHVFVSG 138

Query: 139 NENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQ 198
             +N  +  A++ FY +  +      +F +MP+R++++W +MI GY + G   EAV VF 
Sbjct: 139 YASNSFVQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQNGLASEAVEVFN 198

Query: 199 EMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVK 258
           +M ++   EP+ AT V+VLSACS + +L  G ++H  I     + ++ ++  +++NM+ +
Sbjct: 199 KMRESG-GEPDSATFVSVLSACSQLGSLDLGCWLHECI-VGTGIRMNVVLATSLVNMFSR 256

Query: 259 CGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIAL 318
           CGDVG A  VF+ +   + +SW+ +ISG  M+G G +A+++F  M    V P+ VT++A+
Sbjct: 257 CGDVGRARAVFDSMNEGNVVSWTAMISGYGMHGYGVEAMEVFHRMKACGVVPNRVTYVAV 316

Query: 319 ISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEA 378
           +SAC+H GL+++G ++F +M   Y +VP ++H+ C+VDM+GR GLL EA  F+R +  E 
Sbjct: 317 LSACAHAGLINEGRLVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVRGLSSEE 376

Query: 379 -EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIR 437
              +VW A+L AC++H+N ++   + ++L++ +  + G + L+SN +A A R +    +R
Sbjct: 377 LVPAVWTAMLGACKMHKNFDLGVEVAENLISAEPENPGHYVLLSNMYALAGRMDRVESVR 436

Query: 438 DEIRRMGLKKKTGCSWIEVN 457
           + + + GLKK+ G S I+V 
Sbjct: 437 NVMIQRGLKKQVGYSTIDVE 456



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 146/285 (51%), Gaps = 6/285 (2%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           YTFT  +KAC+     +    +H+HV   G+  + F+Q +L+ FY        A ++F+ 
Sbjct: 109 YTFTSVIKACADLSLLRLGTIVHSHVFVSGYASNSFVQAALVTFYAKSCTPRVARKVFDE 168

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHKLG 127
           +    +++W ++ISG  + G   EA+++F  +     +P++ T VSVLSACS L S  LG
Sbjct: 169 MPQRSIIAWNSMISGYEQNGLASEAVEVFNKMRESGGEPDSATFVSVLSACSQLGSLDLG 228

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
             +H   +      N++L  ++++ + RCG +     +F  M + NVVSWT MI GY   
Sbjct: 229 CWLHECIVGTGIRMNVVLATSLVNMFSRCGDVGRARAVFDSMNEGNVVSWTAMISGYGMH 288

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G+  EA+ VF  M K     PN  T V VLSAC+    ++ G+ V + +   Y +     
Sbjct: 289 GYGVEAMEVFHRM-KACGVVPNRVTYVAVLSACAHAGLINEGRLVFASMKQEYGVVPGVE 347

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS--WSTVISGLAMN 290
               +++M+ + G +  A Q    L+ ++ +   W+ ++    M+
Sbjct: 348 HHVCMVDMFGRGGLLNEAYQFVRGLSSEELVPAVWTAMLGACKMH 392


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 149/458 (32%), Positives = 248/458 (54%), Gaps = 8/458 (1%)

Query: 5   PSSY--NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIF 62
           PSS   +  TFT AL AC+       A  +       G+  D+F+ ++LLH Y     + 
Sbjct: 104 PSSARPDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMG 163

Query: 63  SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 119
            A ++F+ +   D V+W+T+++G    G   EA+ M+  +    V  +   +V V+ AC+
Sbjct: 164 DAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACT 223

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
              + ++G ++H   LR+    ++++  +++D Y + G       +F  MP RN VSW  
Sbjct: 224 LTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNA 283

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           +I G+A+ G   EA+ +F+EM  T   +P+   LV+ L AC+ +  L  GK +H +I  R
Sbjct: 284 LISGFAQNGHADEALDLFREMS-TSGLQPDSGALVSALLACADVGFLKLGKSIHGFILRR 342

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
            +     ++G AV++MY KCG +  A ++FN L+ +D + W+ +I+    +GCG  AL L
Sbjct: 343 LEFQC--ILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALAL 400

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
           F  +    + PD  TF +L+SA SH GLV++G   F  M T + I P  +H  CVVD+  
Sbjct: 401 FQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLA 460

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFAL 419
           R+GL+EEA   +  M  E    +W ALL+ C  ++  E+ + I + ++  +   +G  AL
Sbjct: 461 RSGLVEEANEMLASMHTEPTIPIWVALLSGCLNNKKLELGETIAKKILESQPEDIGVLAL 520

Query: 420 MSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +SN +A A +W+   +IR  ++  G KK  G S IEV+
Sbjct: 521 VSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVH 558



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 161/325 (49%), Gaps = 17/325 (5%)

Query: 76  VVSWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSVLSACSSLVSHKLGKAIHAH 133
           + +W  +++  S+ G    A+ +F  +    +P++ T    L+AC+ L      +A+   
Sbjct: 77  IPAWNALLAARSRAGSPGAALRVFRALPSSARPDSTTFTLALTACARLGDLDAAEAVRVR 136

Query: 134 SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
           +       ++ + +A+L  Y RCG++     +F  MP+++ V+W+TM+ G+   G   EA
Sbjct: 137 AFAAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEA 196

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVI 253
           + ++  M +   AE +E  +V V+ AC+       G  VH     R+ + +  ++  +++
Sbjct: 197 LGMYSRMREHGVAE-DEVVMVGVIQACTLTGNTRMGASVHGRF-LRHGMRMDVVIATSLV 254

Query: 254 NMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDV 313
           +MY K G   +A QVF M+ Y++ +SW+ +ISG A NG   +AL LF  M  + + PD  
Sbjct: 255 DMYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSG 314

Query: 314 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC-----VVDMYGRAGLLEEAE 368
             ++ + AC+  G +  G        +++  + +   + C     V+DMY + G LE A 
Sbjct: 315 ALVSALLACADVGFLKLG-------KSIHGFILRRLEFQCILGTAVLDMYSKCGSLESAR 367

Query: 369 AFIREMPIEAEWSVWGALLNACRIH 393
               ++    +  +W A++  C  H
Sbjct: 368 KLFNKLS-SRDLVLWNAMIACCGTH 391


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 166/522 (31%), Positives = 277/522 (53%), Gaps = 73/522 (13%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
             +T T  L + +     +   ++H+ +++ G   ++ + NSLL+ Y    D   A  +F
Sbjct: 145 TQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVF 204

Query: 69  NSVVFPDV-------------------------------VSWTTIISGLSKCGFHKEAID 97
           + +V  D+                               V+W ++ISG ++ G+   A+D
Sbjct: 205 DRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALD 264

Query: 98  MFCGID----VKPNANTLVSVLSACSSLVSHKLGKAIHAH-------------------- 133
           +F  +     + P+  TL SVLSAC++L    +GK IH+H                    
Sbjct: 265 IFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMY 324

Query: 134 -------SLRNLNENNIILD------NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
                  + R L E     D       A+LD YI+ G +     +FV +  R+VV+WT M
Sbjct: 325 SRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAM 384

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH-SYISTR 239
           I GY + G   EA+++F+ M    +  PN  TL  +LS  SS+++LS GK +H S + + 
Sbjct: 385 IVGYEQHGSYGEAINLFRSMVGGGQ-RPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSG 443

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA-YKDKISWSTVISGLAMNGCGRQALQ 298
              SVS  V NA+I MY K G++  A + F+++   +D +SW+++I  LA +G   +AL+
Sbjct: 444 EIYSVS--VSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALE 501

Query: 299 LFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMY 358
           LF  M++  + PD +T++ + SAC+H GLV+QG   F  M  V +I+P + HYAC+VD++
Sbjct: 502 LFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLF 561

Query: 359 GRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFA 418
           GRAGLL+EA+ FI +MPIE +   WG+LL+ACR+H+N ++     + L+  +  + G ++
Sbjct: 562 GRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYS 621

Query: 419 LMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            ++N ++   +WE+  KIR  ++   +KK+ G SWIEV   +
Sbjct: 622 ALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKV 663



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/435 (24%), Positives = 189/435 (43%), Gaps = 93/435 (21%)

Query: 42  LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG 101
           L   F  N++L  Y    D+ S  + F+ +   D VSWTT+I G    G + +AI +   
Sbjct: 77  LRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGD 136

Query: 102 I---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGS 158
           +    ++P   TL +VL++ ++    + GK +H+  ++     N+ + N++L+ Y +CG 
Sbjct: 137 MVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGD 196

Query: 159 LASCGYLFVKM-------------------------------PKRNVVSWTTMIGGYAER 187
                ++F +M                                +R++V+W +MI G+ +R
Sbjct: 197 PMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQR 256

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSVSN 246
           G+   A+ +F +M +     P+  TL +VLSAC+++  L  GK +HS+I +T +D  +S 
Sbjct: 257 GYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFD--ISG 314

Query: 247 LVGNAVINMYVKC---------------------------------GDVGIAIQVFNMLA 273
           +V NA+I+MY +C                                 GD+  A  +F  L 
Sbjct: 315 IVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLK 374

Query: 274 YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS---------- 323
            +D ++W+ +I G   +G   +A+ LF  M+     P+  T  A++S  S          
Sbjct: 375 DRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQ 434

Query: 324 -HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
            HG  V  G I   ++S              ++ MY +AG +  A      +  E +   
Sbjct: 435 IHGSAVKSGEIYSVSVSN------------ALITMYAKAGNITSASRAFDLIRCERDTVS 482

Query: 383 WGALLNACRIHRNDE 397
           W +++ A   H + E
Sbjct: 483 WTSMIIALAQHGHAE 497


>gi|147846621|emb|CAN83751.1| hypothetical protein VITISV_040023 [Vitis vinifera]
          Length = 496

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 153/409 (37%), Positives = 245/409 (59%), Gaps = 14/409 (3%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T+   +KAC+ +      L +H HV + G   D +I +SL+H Y   KD+ +A Q+FN  
Sbjct: 2   TYPFVIKACNESSVTWFGLLVHTHV-KSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLC 60

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKP--NANTLVSVLSACSSLVSHKLGKA 129
              D+VSW  +I G  K G    A  +F  +  +   + NT+++  +         +GK 
Sbjct: 61  SDRDLVSWNAMIDGYVKRGEMGHARMVFDRMVCRDVISWNTMINGYAI--------VGKI 112

Query: 130 IHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
             A  L   + E N++  N++L  +++CG++     LF +MP R+VVSW +M+  YA+ G
Sbjct: 113 DEAKRLFDEMPERNLVSXNSMLXGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCG 172

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
              EA+++F +M      +P+EAT+V++LSAC+ + AL  G ++H+YI+    + V+++V
Sbjct: 173 KPNEALALFDQMXAVG-VKPSEATVVSLLSACAHLGALDKGLHLHTYINDNR-IEVNSIV 230

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
           G A+++MY KCG + +A QVFN +  KD ++W+T+I+G+A+ G  ++A QLF  M    V
Sbjct: 231 GTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGV 290

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            P+D+TF+A++SACSH G+VD+G  L   MS+ Y I P+++HY CV+D+  RAGLLEEA 
Sbjct: 291 EPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAM 350

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTF 417
             I  MP+E      GALL  CRIH N E+ + + + L+N +    G  
Sbjct: 351 ELIGTMPMEPNPCALGALLGGCRIHGNFELGEMVGKRLINLQPCQSGRL 399


>gi|125579001|gb|EAZ20147.1| hypothetical protein OsJ_35746 [Oryza sativa Japonica Group]
          Length = 601

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 155/428 (36%), Positives = 242/428 (56%), Gaps = 7/428 (1%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           E+H + I+     DIF+ NSL+  Y     +  A  IF  +   +VVSW  +I+ L + G
Sbjct: 163 EVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNG 222

Query: 91  FHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
              EA  +   +      PN+ TLV+VL AC+ + S K+GK IHA S+R     ++ + N
Sbjct: 223 AETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISN 282

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           A++D Y +CG L+    +F +  K +V S+ T+I GY++  +C E++ +F++M ++   +
Sbjct: 283 ALIDMYSKCGQLSLARNIFERSEKDDV-SYNTLILGYSQSPWCFESLLLFKQM-RSVGID 340

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
            +  + +  LSAC+++S    GK +H  +  R  LS    + N+++++Y K G +  A +
Sbjct: 341 YDAVSFMGALSACTNLSVFKHGKEIHCVLVRRL-LSGHPFLSNSLLDLYTKGGMLVTASK 399

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           +FN +  KD  SW+T+I G  M+G    A +LF LM  + +  D V++IA+++ACSHGGL
Sbjct: 400 IFNKITKKDVASWNTMILGYGMHGQIDIAFELFELMKGDGLDYDHVSYIAVLAACSHGGL 459

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           VD+G   F  M     I PQ  HYAC+VD+ GRAG L +    IR+MP  A   VWGALL
Sbjct: 460 VDKGKKYFSQM-VAQNIEPQQMHYACMVDLLGRAGQLSKCAEIIRDMPFPANSDVWGALL 518

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
            ACRIH N E+     + L   K    G + LM N +A   RW + NKIR  ++   ++K
Sbjct: 519 GACRIHGNIELAQWAAEHLFELKPEHSGYYTLMINMYAETGRWNEANKIRKLMKSRKVQK 578

Query: 448 KTGCSWIE 455
               SW++
Sbjct: 579 NPAYSWVQ 586



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 116/424 (27%), Positives = 215/424 (50%), Gaps = 20/424 (4%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+      N  +    + AC      +  L IHA  ++ G    + + N+L+  Y    D
Sbjct: 32  MMRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGD 91

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           + ++ Q+F+ ++  + VSW + I      GF+ + + MF  +   +V P + TL S+L A
Sbjct: 92  VEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPA 151

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
              L S  LG+ +H +S++   + +I + N+++D Y + GSL     +F +M  RNVVSW
Sbjct: 152 LVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSW 211

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
             MI    + G   EA  +  +M+K+ E  PN  TLVNVL AC+ +++L  GK +H++ S
Sbjct: 212 NAMIANLVQNGAETEAFRLVTDMQKSGEC-PNSITLVNVLPACARMASLKMGKQIHAW-S 269

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            R  L     + NA+I+MY KCG + +A  +F   + KD +S++T+I G + +    ++L
Sbjct: 270 IRRGLMFDLFISNALIDMYSKCGQLSLARNIFER-SEKDDVSYNTLILGYSQSPWCFESL 328

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQG----LILFKAMSTVYEIVPQMQHYAC 353
            LF  M    +  D V+F+  +SAC++  +   G     +L + + + +  +        
Sbjct: 329 LLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSN-----S 383

Query: 354 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQDLVNK 409
           ++D+Y + G+L  A     ++  + + + W  ++    +H       E+F+ ++ D ++ 
Sbjct: 384 LLDLYTKGGMLVTASKIFNKI-TKKDVASWNTMILGYGMHGQIDIAFELFELMKGDGLDY 442

Query: 410 KGVS 413
             VS
Sbjct: 443 DHVS 446



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 148/297 (49%), Gaps = 6/297 (2%)

Query: 75  DVVSWTTIISGLSKCG-FH--KEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIH 131
           DVVSW +++S     G FH  + A+          N  +LVSV+ AC +    K G +IH
Sbjct: 5   DVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSIH 64

Query: 132 AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
           A +++      + L NA++D Y + G + +   +F  M ++N VSW + IG +   GF  
Sbjct: 65  ALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYG 124

Query: 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNA 251
           + + +F++M +     P   TL ++L A   + +   G+ VH Y S +  + +   V N+
Sbjct: 125 DVLRMFRKMSE-HNVMPGSITLSSLLPALVELGSFDLGREVHGY-SIKRAMDLDIFVANS 182

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD 311
           +++MY K G +  A  +F  +  ++ +SW+ +I+ L  NG   +A +L + M  +   P+
Sbjct: 183 LVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPN 242

Query: 312 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            +T + ++ AC+    +  G  +  A S    ++  +     ++DMY + G L  A 
Sbjct: 243 SITLVNVLPACARMASLKMGKQI-HAWSIRRGLMFDLFISNALIDMYSKCGQLSLAR 298



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 104/211 (49%), Gaps = 13/211 (6%)

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           MP+R+VVSW +++  +   G   +A      M ++     N A+LV+V+ AC +     F
Sbjct: 1   MPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSG-FPLNVASLVSVVPACGTEQEEKF 59

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
           G  +H+ ++ +  L+    + NA+++MY K GDV  ++QVF+ +  ++++SW++ I    
Sbjct: 60  GLSIHA-LAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFL 118

Query: 289 MNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVD-----QGLILFKAMSTVYE 343
             G     L++F  M  + V P  +T  +L+ A    G  D      G  + +AM     
Sbjct: 119 NAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIF 178

Query: 344 IVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
           +   +      VDMY + G LE+A     +M
Sbjct: 179 VANSL------VDMYAKFGSLEKASTIFEQM 203



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 79/186 (42%), Gaps = 4/186 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M S    Y+  +F  AL AC+     +   EIH  ++        F+ NSLL  Y     
Sbjct: 334 MRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSNSLLDLYTKGGM 393

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSA 117
           + +A +IFN +   DV SW T+I G    G    A ++F    G  +  +  + ++VL+A
Sbjct: 394 LVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFELFELMKGDGLDYDHVSYIAVLAA 453

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVS 176
           CS       GK   +  +    E   +    ++D   R G L+ C  +   MP   N   
Sbjct: 454 CSHGGLVDKGKKYFSQMVAQNIEPQQMHYACMVDLLGRAGQLSKCAEIIRDMPFPANSDV 513

Query: 177 WTTMIG 182
           W  ++G
Sbjct: 514 WGALLG 519


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 140/419 (33%), Positives = 247/419 (58%), Gaps = 13/419 (3%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---- 99
           ++ + N+++   +  K +  A  +F ++   D ++WTT+++GL++ G   EA+D+F    
Sbjct: 210 NVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMR 269

Query: 100 ---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRC 156
               GID      T  S+L+AC +L + + GK IHA+  R   E+N+ + +A++D Y +C
Sbjct: 270 AEGVGID----QYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKC 325

Query: 157 GSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNV 216
            S+     +F +M  +N++SWT MI GY + G  +EAV VF EM++    +P++ TL +V
Sbjct: 326 RSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDG-IKPDDFTLGSV 384

Query: 217 LSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD 276
           +S+C+++++L  G   H  ++    L     V NA++ +Y KCG +  A ++F+ +++ D
Sbjct: 385 ISSCANLASLEEGAQFHC-LALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHD 443

Query: 277 KISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFK 336
           ++SW+ ++ G A  G  ++ + LF  M+   V PD VTFI ++SACS  GLVD+G   F 
Sbjct: 444 QVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFH 503

Query: 337 AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND 396
           +M   ++IVP   HY C++D+Y R+G L++AE FI++MP   +   W  LL+ACR+  + 
Sbjct: 504 SMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGDM 563

Query: 397 EMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
           E+     ++L+     +  ++ L+ +  A    W D  K+R  +R   +KK+ GCSWI+
Sbjct: 564 EIGKWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIK 622



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 110/412 (26%), Positives = 204/412 (49%), Gaps = 46/412 (11%)

Query: 43  HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI 102
            ++   NSLL        +    ++F S+   D VS+  +++G S+ G H  A   +  +
Sbjct: 75  RNLVTGNSLLSALARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVAL 134

Query: 103 -----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR--------------------- 136
                 V+P+  T+  V+   S+L    LG+ +H   LR                     
Sbjct: 135 LRDEAGVRPSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVG 194

Query: 137 ----------NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
                      +   N+++ N ++   +RC  +A    LF  + +R+ ++WTTM+ G  +
Sbjct: 195 PIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQ 254

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS-TRYDLSVS 245
            G   EA+ VF+ M + +    ++ T  ++L+AC +++AL  GK +H+YI+ T Y+ +V 
Sbjct: 255 NGLESEALDVFRRM-RAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNV- 312

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             VG+A+++MY KC  V +A  VF  + +K+ ISW+ +I G   NGCG +A+++FS M  
Sbjct: 313 -FVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQR 371

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
           + + PDD T  ++IS+C++   +++G   F  ++ V  + P +     +V +YG+ G +E
Sbjct: 372 DGIKPDDFTLGSVISSCANLASLEEG-AQFHCLALVSGLRPYVTVSNALVTLYGKCGSIE 430

Query: 366 EAEAFIREMPIEAEWSVWGALLNA----CRIHRNDEMFDRIRQDLVNKKGVS 413
           +A     EM    + S W AL+       +     ++F+++    V   GV+
Sbjct: 431 DAHRLFDEMSFHDQVS-WTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVT 481



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 154/288 (53%), Gaps = 7/288 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YTF   L AC      ++  +IHA++    +  ++F+ ++L+  Y   + +  A  +F
Sbjct: 276 DQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVF 335

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +++ +++SWT +I G  + G  +EA+ +F  +    +KP+  TL SV+S+C++L S +
Sbjct: 336 RRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLE 395

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G   H  +L +     + + NA++  Y +CGS+     LF +M   + VSWT ++ GYA
Sbjct: 396 EGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYA 455

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGK-YVHSYISTRYDLSV 244
           + G  KE + +F++M  +K  +P+  T + VLSACS    +  G+ Y HS +   +D+  
Sbjct: 456 QFGKAKETIDLFEKM-LSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHS-MQQDHDIVP 513

Query: 245 SNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDKISWSTVISGLAMNG 291
            +     +I++Y + G +  A + +  M    D   W+T++S   + G
Sbjct: 514 LDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRG 561



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 131/299 (43%), Gaps = 43/299 (14%)

Query: 109 NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168
           NTL++   A S L+ H   +   A   RNL     +  N++L    R G +     LF  
Sbjct: 50  NTLLTAY-ASSGLLPHAR-RVFDAMPGRNL-----VTGNSLLSALARAGLVRDMERLFTS 102

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA-EPNEATLVNVLSACSSISALS 227
           +P+R+ VS+  ++ G++  G    A   +  + + +    P+  T+  V+   S++   +
Sbjct: 103 LPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASALGDRA 162

Query: 228 FGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK------------ 275
            G+ VH  I  R         G+ +++MY K G +G A +VF+ +  K            
Sbjct: 163 LGRQVHCQI-LRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGL 221

Query: 276 -------------------DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFI 316
                              D I+W+T+++GL  NG   +AL +F  M    V  D  TF 
Sbjct: 222 LRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFG 281

Query: 317 ALISACSHGGLVDQGLILFKAMS-TVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
           ++++AC     +++G  +   ++ T YE    +   + +VDMY +   +  AEA  R M
Sbjct: 282 SILTACGALAALEEGKQIHAYITRTCYE--DNVFVGSALVDMYSKCRSVRLAEAVFRRM 338


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 147/459 (32%), Positives = 267/459 (58%), Gaps = 9/459 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK---DIFSAH 65
           + +T +  + AC+         ++H+  I +G   D  +   L++ Y        + +A 
Sbjct: 270 DRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAAR 329

Query: 66  QIFNSVVFPDVVSWTTIISG-LSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSL 121
           +IF+ ++  +V SWT +I+G + K G+ +EA+D+F G+    V PN  T  S L AC++L
Sbjct: 330 KIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANL 389

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
            + ++G+ +  H+++    +   + N+++  Y R G +      F  + ++N++S+ T+I
Sbjct: 390 AALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVI 449

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
             YA+    +EA+ +F E+E  +    +  T  ++LS  +SI  +  G+ +H+ +  +  
Sbjct: 450 DAYAKNLNSEEALELFNEIED-QGMGASAFTFASLLSGAASIGTIGKGEQIHARV-IKSG 507

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
           L ++  V NA+I+MY +CG++  A QVF  +  ++ ISW+++I+G A +G   QAL+LF 
Sbjct: 508 LKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFH 567

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            M+   V P++VT+IA++SACSH GLV++G   FK+M T + ++P+M+HYAC+VD+ GR+
Sbjct: 568 KMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRS 627

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           G L EA  FI  MP +A+  VW   L ACR+H N E+     + ++ ++      + L+S
Sbjct: 628 GSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLS 687

Query: 422 NTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           N +A   +W++ + IR  ++   L K+ GCSW+EV   +
Sbjct: 688 NLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKV 726



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/381 (29%), Positives = 201/381 (52%), Gaps = 24/381 (6%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLH-DIFIQNSLLHFYVTVK-DIFSAHQ 66
           N Y F  A +ACS A        I   VI+ G+L  D+ +   L+  +V  + D+ SA +
Sbjct: 167 NEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFK 226

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVS 123
           +F  +   + V+WT +I+ L + G+  EAID+F  +     +P+  TL  V+SAC+++  
Sbjct: 227 VFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMEL 286

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAI----LDFYIRC---GSLASCGYLFVKMPKRNVVS 176
             LG+ +H+ ++R    + + LD  +    ++ Y +C   GS+ +   +F ++   NV S
Sbjct: 287 LLLGQQLHSQAIR----HGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFS 342

Query: 177 WTTMIGGYAER-GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           WT MI GY ++ G+ +EA+ +F+ M  T    PN  T  + L AC++++AL  G+ V ++
Sbjct: 343 WTAMITGYVQKGGYDEEALDLFRGMILT-HVIPNHFTFSSTLKACANLAALRIGEQVFTH 401

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
            + +   S  N V N++I+MY + G +  A + F++L  K+ IS++TVI   A N    +
Sbjct: 402 -AVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEE 460

Query: 296 ALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC-- 353
           AL+LF+ +    +     TF +L+S  +  G + +G    +  + V +   ++    C  
Sbjct: 461 ALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGE---QIHARVIKSGLKLNQSVCNA 517

Query: 354 VVDMYGRAGLLEEAEAFIREM 374
           ++ MY R G +E A     +M
Sbjct: 518 LISMYSRCGNIESAFQVFEDM 538



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 120/261 (45%), Gaps = 12/261 (4%)

Query: 106 PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD----NAILDFYIRCGSLAS 161
           P+  T    L  C    S  +G  +H      L ++++ LD    N+++  Y +CG    
Sbjct: 64  PDLQTYSLFLKKCIRTRSFDIGTLVH----EKLTQSDLQLDSVTLNSLISLYSKCGQWEK 119

Query: 162 CGYLFVKM-PKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
              +F  M   R+++SW+ M+  +A       A+  F +M +     PNE        AC
Sbjct: 120 ATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYY-PNEYCFAAATRAC 178

Query: 221 SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKC-GDVGIAIQVFNMLAYKDKIS 279
           S+   +S G  +  ++     L     VG  +I+M+VK  GD+  A +VF  +  ++ ++
Sbjct: 179 STAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVT 238

Query: 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMS 339
           W+ +I+ L   G   +A+ LF  MI +   PD  T   +ISAC++  L+  G  L  + +
Sbjct: 239 WTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQL-HSQA 297

Query: 340 TVYEIVPQMQHYACVVDMYGR 360
             + +        C+++MY +
Sbjct: 298 IRHGLTLDRCVGCCLINMYAK 318



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 94/196 (47%), Gaps = 16/196 (8%)

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G   +A+S  + M   + + P+  T    L  C    +   G  VH  + T+ DL + ++
Sbjct: 45  GRLHKAISTLEHMVH-QGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKL-TQSDLQLDSV 102

Query: 248 VGNAVINMYVKCGDVGIAIQVFNML-AYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
             N++I++Y KCG    A  +F ++ + +D ISWS ++S  A N  G +AL  F  MI N
Sbjct: 103 TLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIEN 162

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFK-AMSTVYEIVPQMQHYACV----VDMY--G 359
             +P++  F A   ACS    V  G  +F   + T Y     +Q   CV    +DM+  G
Sbjct: 163 GYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGY-----LQSDVCVGCGLIDMFVKG 217

Query: 360 RAGLLEEAEAFIREMP 375
           R  L+   + F  +MP
Sbjct: 218 RGDLVSAFKVF-EKMP 232


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 155/447 (34%), Positives = 263/447 (58%), Gaps = 10/447 (2%)

Query: 22  LAHPHQKALE-IHAHVIEYGHLHDIFIQNSLLHF-YVTVKDIFSAHQIFNSVVFPDVVSW 79
           LA P  K L+ IHA +I  G      +   LL F Y     I    ++F S+  PD   +
Sbjct: 27  LAGPRLKPLQQIHARIIITGLGRTRSLITKLLSFAYAAASPISYTRRLFFSIPKPDTFLF 86

Query: 80  TTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR 136
            ++I+  SK  F +E++  +  +   ++  +  T  +V+ + + L +  +G+ IH H   
Sbjct: 87  HSLITLTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYI 146

Query: 137 NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSV 196
                +  +  A++ FY + G +     +F KMP++ VV+W +MI GY + GF KEAV +
Sbjct: 147 CGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVEL 206

Query: 197 FQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR-YDLSVSNLVGNAVINM 255
           F  M+     +P+ +T V++LSAC+ + A+  G +VH YI+   +DL+V  ++G A++NM
Sbjct: 207 FFLMQDLG-VKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNV--VLGTALMNM 263

Query: 256 YVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTF 315
           Y +CG+V  A +VF+ +  K+ ++W+ +ISG  M+G G QA++LF+ M  +   P++VTF
Sbjct: 264 YSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTF 323

Query: 316 IALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM- 374
           +A++SAC+H GLVD+G  +F  M   Y +VP ++H  C+VDM GRAG L EA  FI+   
Sbjct: 324 VAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTS 383

Query: 375 PIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTN 434
           P E   +VW A+L AC++H+N ++   + + L++ +  + G + ++SN +A A R +   
Sbjct: 384 PKEPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSIEPENPGHYVMLSNIYALAGRMDRVE 443

Query: 435 KIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           KIR+ + R  LKK+ G S I+V+  ++
Sbjct: 444 KIRNIMIRNRLKKEVGYSTIDVDHKVY 470


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 162/498 (32%), Positives = 263/498 (52%), Gaps = 48/498 (9%)

Query: 1   MLSCPSSYNH--YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYV-- 56
           ++SC  S  H  Y     L+ CS     ++  +IHA +++ G + D +     L F +  
Sbjct: 3   VISCSFSLEHNLYETMSCLQRCS---KQEELKQIHARMLKTGLMQDSYAITKFLSFCISS 59

Query: 57  TVKDIFSAHQI-FNSVVFPDVVSWTTIISGLSKCGFHKEA-----IDMFCGIDVKPNANT 110
           T  D     QI F+    PD   W  +I G S C    E        M C      NA T
Sbjct: 60  TSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFS-CSDEPERSLLLYQRMLCS-SAPHNAYT 117

Query: 111 LVSVLSACSSLVSHKLGKAIHAHSLRNLNENNI---------------------ILD--- 146
             S+L ACS+L + +    IHA   +   EN++                     + D   
Sbjct: 118 FPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIP 177

Query: 147 -------NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQE 199
                  N+++  Y++ G +     LF KM ++N +SWTTMI GY +    KEA+ +F E
Sbjct: 178 EPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHE 237

Query: 200 MEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKC 259
           M+ + + EP+  +L N LSAC+ + AL  GK++HSY++ +  + + +++G  +I+MY KC
Sbjct: 238 MQNS-DVEPDNVSLANALSACAQLGALEQGKWIHSYLN-KTRIRMDSVLGCVLIDMYAKC 295

Query: 260 GDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALI 319
           G++  A++VF  +  K   +W+ +ISG A +G GR+A+  F  M    + P+ +TF A++
Sbjct: 296 GEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVL 355

Query: 320 SACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAE 379
           +ACS+ GLV++G ++F +M   Y + P ++HY C+VD+ GRAGLL+EA+ FI+EMP++  
Sbjct: 356 TACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPN 415

Query: 380 WSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDE 439
             +WGALL ACRIH+N E+ + I + L+       G +   +N  A   +W+   + R  
Sbjct: 416 AVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRL 475

Query: 440 IRRMGLKKKTGCSWIEVN 457
           ++  G+ K  GCS I + 
Sbjct: 476 MKEQGVAKVPGCSTISLE 493


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 150/446 (33%), Positives = 246/446 (55%), Gaps = 40/446 (8%)

Query: 49  NSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVK 105
           + L   Y ++  +  +  +F     P V  WT II G +  G H++A++ +  +    V+
Sbjct: 13  DKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVE 72

Query: 106 PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYL 165
           PNA T  S+L  C      + GKA+H+ +++   ++++ +   +LD Y R G + S   L
Sbjct: 73  PNAFTFSSILKLCPI----EPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQL 128

Query: 166 FVKMPKRNVVS-------------------------------WTTMIGGYAERGFCKEAV 194
           F  MP++++VS                               W  MI GY + G   EA+
Sbjct: 129 FDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEAL 188

Query: 195 SVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVIN 254
            +F+ M K K A+PNE T+++VLSAC  + AL  G++VHSYI     +  +  VG A+++
Sbjct: 189 VLFRRMLKAK-AKPNEVTVLSVLSACGQLGALESGRWVHSYIENN-GIQFNVHVGTALVD 246

Query: 255 MYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVT 314
           MY KCG +  A  VF+ +  KD ++W+++I G AM G  ++ALQLF  M    + P ++T
Sbjct: 247 MYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNIT 306

Query: 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
           FI ++SAC H G V +G  +F  M   Y I P+++HY C+V++ GRAG +E+A   ++ M
Sbjct: 307 FIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNM 366

Query: 375 PIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTN 434
            IE +  +WG LL ACR+H    + ++I + LV++   + GT+ L+SN +A    W+   
Sbjct: 367 NIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVA 426

Query: 435 KIRDEIRRMGLKKKTGCSWIEVNPSI 460
           ++R  ++  G+KK+ GCS IEVN  +
Sbjct: 427 RLRTMMKDSGVKKEPGCSSIEVNNKV 452



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 154/326 (47%), Gaps = 40/326 (12%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML+     N +TF+  LK C    P +    +H+  ++ G   D++++  LL  Y    D
Sbjct: 66  MLTQGVEPNAFTFSSILKLC----PIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGD 121

Query: 61  IFSAHQIFNS--------------------------VVFP-----DVVSWTTIISGLSKC 89
           + SA Q+F++                          V+F      D V W  +I G ++ 
Sbjct: 122 VVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQN 181

Query: 90  GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
           G   EA+ +F  +     KPN  T++SVLSAC  L + + G+ +H++   N  + N+ + 
Sbjct: 182 GMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVG 241

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
            A++D Y +CGSL     +F K+  ++VV+W +MI GYA  GF +EA+ +F+ M +    
Sbjct: 242 TALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMG-L 300

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
            P   T + +LSAC     ++ G  + + +   Y +         ++N+  + G V  A 
Sbjct: 301 HPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAY 360

Query: 267 Q-VFNMLAYKDKISWSTVISGLAMNG 291
           + V NM    D + W T++    ++G
Sbjct: 361 ELVKNMNIEPDPVLWGTLLGACRLHG 386


>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 537

 Score =  271 bits (693), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 160/477 (33%), Positives = 255/477 (53%), Gaps = 42/477 (8%)

Query: 21  SLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK--DIFSAHQIFNSVVFPDVVS 78
           ++AH  Q    I +H+   G L D F    ++ F       DI  A+ +F S+       
Sbjct: 25  TMAHIKQ----IQSHLTVSGTLFDPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFI 80

Query: 79  WTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSL 135
           W T++   +        + ++         PN  T   +L AC+ L     G  +HA ++
Sbjct: 81  WNTMLRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAV 140

Query: 136 RNLNENNIILDNAILDFYIRCGSLASC--------------------GY----------- 164
           R   E    + N +L  Y  C  + S                     GY           
Sbjct: 141 RLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQ 200

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224
           LF +MP++N VSW+ MI GYA+ G  +EA+ +F +M+      PN   +V  L+AC+ + 
Sbjct: 201 LFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQ-IAGFRPNHGAIVGALTACAFLG 259

Query: 225 ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVI 284
           AL  G+++H+Y+  R  + +  ++G A+I+MY KCG V  A +VF+ +  +D  +++++I
Sbjct: 260 ALDQGRWIHAYVD-RNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLI 318

Query: 285 SGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 344
           SGLA +G    A+++F+ M    V P++VTFI L+SACS  GLV++GL +FK+M+ +Y I
Sbjct: 319 SGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGI 378

Query: 345 VPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQ 404
            P +QHY C+VD+ GRAG+LE+A+  +REMP+E +  V GALLNACR+H + E+     +
Sbjct: 379 EPVVQHYGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVE 438

Query: 405 DLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
            L  +     G   L+SN +A A++WED  K+R  +    +KK  GCS IEV+ ++F
Sbjct: 439 CLAERSLDHGGVHVLLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEVDGAVF 495



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 133/274 (48%), Gaps = 35/274 (12%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           MLS     N+YTF+  L+AC+        + +HA  +  G     F+QN LLH Y +   
Sbjct: 104 MLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNC 163

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCG------------------------------ 90
           + SA ++F+  V  DVV+WT +I+G +K G                              
Sbjct: 164 MDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQI 223

Query: 91  -FHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
              +EA+++F  + +   +PN   +V  L+AC+ L +   G+ IHA+  RN    + IL 
Sbjct: 224 GLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILG 283

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
            A++D Y +CG + +   +F +M  R+V ++T++I G A  G    A+ +F  M+  +  
Sbjct: 284 TALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQ-NEGV 342

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
            PNE T + +LSACS +  +  G  +   ++  Y
Sbjct: 343 CPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIY 376


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  271 bits (693), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 147/408 (36%), Positives = 228/408 (55%), Gaps = 8/408 (1%)

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN-----TLVSV 114
           ++  A  IF  +  P++ +    +  L++      AI  F      PNA      T  SV
Sbjct: 39  NVRQAALIFAHLASPNIFAHNATLKALAQNSHWFHAIQFFNHQVSSPNAPNPDEFTFTSV 98

Query: 115 LSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKM--PKR 172
           L AC+ L     G+ IHA   +   E+N+ + N+++D Y + G L    +LF +M    R
Sbjct: 99  LKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDR 158

Query: 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYV 232
           NVV W  MI GYA+     +A+ VF+ M++     PN+ TLV+VL AC+ + AL  GK++
Sbjct: 159 NVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWI 218

Query: 233 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
             +IS R ++++   +GNA+ +MY KCG +  A +VFN +  +D ISWS +I GLAM G 
Sbjct: 219 DGFISRR-EMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGH 277

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
             +A   F  M+     P+DV F+ L++AC+H GLV +GL  F  M   Y + P+++HY 
Sbjct: 278 ADEAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYG 337

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           CVVD+  RAG L++AE  I  MP++    +WGALL  CRI+R+     R+ Q ++     
Sbjct: 338 CVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQRVVQHILELDSD 397

Query: 413 SVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
             G++  ++N ++   R +D  K R  +R  G+ K  GCSWIEV+ ++
Sbjct: 398 HSGSYVYLANVYSSMGRLDDAAKCRLRMRENGVLKTPGCSWIEVDNTV 445



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 156/310 (50%), Gaps = 15/310 (4%)

Query: 2   LSCPSSYN--HYTFTQALKACS-LAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV 58
           +S P++ N   +TFT  LKAC+ LAH      +IHA V + G   ++F++NSL+  Y   
Sbjct: 82  VSSPNAPNPDEFTFTSVLKACAGLAHV-VNGQKIHAMVTKQGFESNLFVRNSLIDMYFKA 140

Query: 59  KDIFSAHQIFNSVVFPD--VVSWTTIISGLSKCGFHKEAIDMFCGID----VKPNANTLV 112
             +  A  +F+ +   D  VV W  +I+G ++   + +AI++F  +     V PN  TLV
Sbjct: 141 GYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLV 200

Query: 113 SVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKR 172
           SVL AC+ L +  LGK I     R      + L NA+ D Y +CG +     +F KM +R
Sbjct: 201 SVLPACAHLGALDLGKWIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNKMEER 260

Query: 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYV 232
           +V+SW+ +I G A  G   EA   F EM    E +PN+   + +L+AC+    +  G   
Sbjct: 261 DVISWSIIICGLAMYGHADEAFGCFYEMLDCGE-KPNDVVFMGLLTACTHAGLVKKGLNC 319

Query: 233 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK-ISWSTVISGLAM-- 289
            + +   Y +S        V+++  + G++  A  + + +  K   I W  ++ G  +  
Sbjct: 320 FNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCRIYR 379

Query: 290 -NGCGRQALQ 298
            +G G++ +Q
Sbjct: 380 DSGRGQRVVQ 389



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 14/168 (8%)

Query: 45  IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF----- 99
           +F+ N+L   Y     I  A ++FN +   DV+SW+ II GL+  G   EA   F     
Sbjct: 231 LFLGNALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLD 290

Query: 100 CGIDVKPNANTLVSVLSACS--SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCG 157
           CG   KPN    + +L+AC+   LV   L    +           +     ++D   R G
Sbjct: 291 CG--EKPNDVVFMGLLTACTHAGLVKKGL-NCFNTMDKEYGVSPKVEHYGCVVDLLSRAG 347

Query: 158 SLASCGYLFVKMP-KRNVVSWTTMIGG---YAERGFCKEAVSVFQEME 201
            L     +   MP K NV+ W  ++GG   Y + G  +  V    E++
Sbjct: 348 ELDKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQRVVQHILELD 395


>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
          Length = 617

 Score =  271 bits (693), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 158/492 (32%), Positives = 259/492 (52%), Gaps = 36/492 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    S + ++ +  LKACS     +  L+IH  + + G   D+F+QN L+  Y+    
Sbjct: 116 MLENGVSVDKFSMSLVLKACSRLGFVKGGLQIHGILRKTGLCSDLFLQNCLIGLYLKCGC 175

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPN-ANTLVSVLSACS 119
           +  A QIF+ +   D VS+ ++I G  K G  + A ++F   D+ P     L+S  S  S
Sbjct: 176 LGFARQIFDRMPQRDSVSFNSMIDGYVKRGLIESARELF---DLMPREVKNLISWNSIIS 232

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
                  G  I ++    + E ++I  N+++D Y++ G +     LF  MP+R+VV+W T
Sbjct: 233 GYAQTSDGVDIASNLFAEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDAMPRRDVVTWAT 292

Query: 180 MIGGYAERGFCK-------------------------------EAVSVFQEMEKTKEAEP 208
           MI GYA+ GF                                 EA+ +F +MEK     P
Sbjct: 293 MIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMMAGYVQNKYHMEALEIFSDMEKESHLSP 352

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           +E TLV VLSA + +  LS    +H YI  +    +   +G A+I+MY KCG +  A+ V
Sbjct: 353 DETTLVIVLSAIAQLGRLSKAMDMHLYIVEK-QFFLGGKLGVALIDMYSKCGSIQHAMLV 411

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F  +  K    W+ +I GLA++G G  A  +   +   ++ PDD+TF+ +++ACSH GLV
Sbjct: 412 FEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLV 471

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
            +GL+ F+ M   ++I P++QHY C+VD+  R+G +E A+  I+EMPIE    +W   L 
Sbjct: 472 KEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIQEMPIEPNDVIWRTFLT 531

Query: 389 ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
           AC  H+  E  + + + L+ + G +  ++ L+SN +A   +W+D  +IR  ++   ++K 
Sbjct: 532 ACNHHKEFETGELVGKHLILQAGYNPSSYVLLSNMYASFGKWKDVRRIRTMMKERKIEKI 591

Query: 449 TGCSWIEVNPSI 460
            GCSWIE++  +
Sbjct: 592 PGCSWIELDGRV 603



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 1/101 (0%)

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           +D   W+ VI   +     +QAL LF LM+ N V  D  +   ++ ACS  G V  GL +
Sbjct: 88  EDPFLWNAVIKSHSHGKDPKQALLLFCLMLENGVSVDKFSMSLVLKACSRLGFVKGGLQI 147

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP 375
              +     +   +    C++ +Y + G L  A      MP
Sbjct: 148 HGILRKT-GLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMP 187


>gi|357468471|ref|XP_003604520.1| Coatomer subunit beta'-2 [Medicago truncatula]
 gi|355505575|gb|AES86717.1| Coatomer subunit beta'-2 [Medicago truncatula]
          Length = 1033

 Score =  271 bits (693), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 151/456 (33%), Positives = 248/456 (54%), Gaps = 5/456 (1%)

Query: 8   YNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           Y+ +TF  ALKA + +        IHA  I+ G     ++ N+L   Y   +      ++
Sbjct: 250 YDSHTFAVALKASAESGLLHYGKAIHAQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMRL 309

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSH 124
           F  +  PDVVSWT +I    + G  + A+D F  +   DV PN  T  SV+SAC++L   
Sbjct: 310 FGKMSTPDVVSWTNLIMTYVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAIT 369

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           K G+ IH H+LR    + + + N+I+  Y +CG L     +F  M +++++SW+T+I  Y
Sbjct: 370 KWGEQIHGHALRLGLVDALSVSNSIITLYSKCGLLQEASLVFDGMTRKDIISWSTIISVY 429

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
            +    KEA +    M + +  +PNE  L +VLS C S++ L  GK VH+Y +    L  
Sbjct: 430 CQGSHAKEAFNYLSWMSR-EGPKPNEFALASVLSVCGSMALLEPGKQVHAY-ALCIGLDH 487

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
             +V +A+I+MY + G++  A ++F+ +   D +SW+ +I+G A +G  ++A+ LF  + 
Sbjct: 488 ETMVHSALISMYSRSGNLQEASKIFDSIKNNDIVSWTAMINGYAEHGYSQEAISLFENIS 547

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
              + PD VTFI +++AC+H GLVD G   +K M+  Y+I P  +HY C++D+  RAG L
Sbjct: 548 SVGLMPDYVTFIGILTACNHAGLVDLGFYYYKLMTNEYQIAPSKEHYGCIIDLLCRAGRL 607

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
            EAE  +R MP   +  VW  LL ACR H + +      + ++     S G    ++N +
Sbjct: 608 SEAEHMVRNMPFPCDDVVWSTLLRACRDHGDLDRAIWAAEQMLRLHPNSAGAHITLANIY 667

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           + + R E+   +R  ++  G+ K+ G SWI  N  +
Sbjct: 668 SASGRREEAAHVRKLMKSKGVIKEPGWSWINSNDQL 703



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 106/393 (26%), Positives = 189/393 (48%), Gaps = 17/393 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +  + ALKAC+L         +H   ++ G ++ +F+ ++L+  Y+ V        +F
Sbjct: 150 DQFVVSVALKACALGMNVYFGELLHGFSVKSGLINSVFVSSALVDMYMKVGKTEQGCSVF 209

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
            ++   +VVSWT +I GL   G   + +  F  +    V  +++T    L A +      
Sbjct: 210 ENMTTRNVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFAVALKASAESGLLH 269

Query: 126 LGKAIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
            GKAIHA +++   NE   ++ N +   Y +C        LF KM   +VVSWT +I  Y
Sbjct: 270 YGKAIHAQTIKQGFNETAYVV-NTLGTMYSKCRKPDYVMRLFGKMSTPDVVSWTNLIMTY 328

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
            + G  + A+  F+ M K+ +  PNE T  +V+SAC++++   +G+ +H + + R  L  
Sbjct: 329 VQMGDEERALDAFKRMRKS-DVSPNEYTFASVISACANLAITKWGEQIHGH-ALRLGLVD 386

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           +  V N++I +Y KCG +  A  VF+ +  KD ISWST+IS        ++A    S M 
Sbjct: 387 ALSVSNSIITLYSKCGLLQEASLVFDGMTRKDIISWSTIISVYCQGSHAKEAFNYLSWMS 446

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQH----YACVVDMYGR 360
                P++    +++S C    L++ G  +       Y +   + H    ++ ++ MY R
Sbjct: 447 REGPKPNEFALASVLSVCGSMALLEPGKQVH-----AYALCIGLDHETMVHSALISMYSR 501

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           +G L+EA      +    +   W A++N    H
Sbjct: 502 SGNLQEASKIFDSIK-NNDIVSWTAMINGYAEH 533



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 143/282 (50%), Gaps = 5/282 (1%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S N YTF   + AC+     +   +IH H +  G +  + + NS++  Y     +  A  
Sbjct: 350 SPNEYTFASVISACANLAITKWGEQIHGHALRLGLVDALSVSNSIITLYSKCGLLQEASL 409

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVS 123
           +F+ +   D++SW+TIIS   +    KEA +    +     KPN   L SVLS C S+  
Sbjct: 410 VFDGMTRKDIISWSTIISVYCQGSHAKEAFNYLSWMSREGPKPNEFALASVLSVCGSMAL 469

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            + GK +HA++L    ++  ++ +A++  Y R G+L     +F  +   ++VSWT MI G
Sbjct: 470 LEPGKQVHAYALCIGLDHETMVHSALISMYSRSGNLQEASKIFDSIKNNDIVSWTAMING 529

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           YAE G+ +EA+S+F+ +       P+  T + +L+AC+    +  G Y +  ++  Y ++
Sbjct: 530 YAEHGYSQEAISLFENISSVG-LMPDYVTFIGILTACNHAGLVDLGFYYYKLMTNEYQIA 588

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDKISWSTVI 284
            S      +I++  + G +  A   V NM    D + WST++
Sbjct: 589 PSKEHYGCIIDLLCRAGRLSEAEHMVRNMPFPCDDVVWSTLL 630



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 177/378 (46%), Gaps = 11/378 (2%)

Query: 49  NSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNA 108
           NS L   + +  I  A  +FN +   D +SWT +I+G        EA+ +F  + V    
Sbjct: 88  NSQLKQLMKLGKICEARDMFNKMSHRDEISWTNLIAGYVNAANSNEALILFSNMWVDSGL 147

Query: 109 NT---LVSV-LSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGY 164
                +VSV L AC+  ++   G+ +H  S+++   N++ + +A++D Y++ G       
Sbjct: 148 QKDQFVVSVALKACALGMNVYFGELLHGFSVKSGLINSVFVSSALVDMYMKVGKTEQGCS 207

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224
           +F  M  RNVVSWT +I G    G   + +S F EM ++K    +  T    L A +   
Sbjct: 208 VFENMTTRNVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGY-DSHTFAVALKASAESG 266

Query: 225 ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVI 284
            L +GK +H+  + +   + +  V N +  MY KC      +++F  ++  D +SW+ +I
Sbjct: 267 LLHYGKAIHAQ-TIKQGFNETAYVVNTLGTMYSKCRKPDYVMRLFGKMSTPDVVSWTNLI 325

Query: 285 SGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 344
                 G   +AL  F  M  + V P++ TF ++ISAC++  +   G  +    +    +
Sbjct: 326 MTYVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAITKWGEQI-HGHALRLGL 384

Query: 345 VPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDRIR 403
           V  +     ++ +Y + GLL+EA      M    +   W  +++  C+     E F+ + 
Sbjct: 385 VDALSVSNSIITLYSKCGLLQEASLVFDGM-TRKDIISWSTIISVYCQGSHAKEAFNYL- 442

Query: 404 QDLVNKKGVSVGTFALMS 421
              ++++G     FAL S
Sbjct: 443 -SWMSREGPKPNEFALAS 459


>gi|297724409|ref|NP_001174568.1| Os06g0114366 [Oryza sativa Japonica Group]
 gi|218197444|gb|EEC79871.1| hypothetical protein OsI_21372 [Oryza sativa Indica Group]
 gi|255676656|dbj|BAH93296.1| Os06g0114366 [Oryza sativa Japonica Group]
          Length = 509

 Score =  271 bits (693), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 155/423 (36%), Positives = 248/423 (58%), Gaps = 27/423 (6%)

Query: 47  IQNSLLHFYVTVKDIFSAHQIFNSVVFP---DVVSWTTIISGLSKCGFHKEAIDMFCGID 103
           +++ L+  Y+   ++ SA  + +   FP   DVVS T +++G ++ GF  EA+ +F  + 
Sbjct: 87  VRDGLVELYLARGELASARALVDG--FPAGRDVVSCTAMVTGHARHGFLDEAVVLFFAMA 144

Query: 104 ----VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD----NAILDFYIR 155
               V  +A    +  SAC+ +    LG+  H    R + E  + +D    NA++D Y +
Sbjct: 145 DDRCVAIDAVAAAAAFSACAQIGDLALGREAH----RRVAERKVAMDVVAWNALVDMYAK 200

Query: 156 CGSLASCGYLFVKMP-KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           CG  A+    F +MP K+NVVSW TM+  +A  G  +EA+++FQEM+      P++AT V
Sbjct: 201 CGDAAAAHRWFRRMPVKKNVVSWNTMMSAFARAGELEEALALFQEMQAAA-VRPDDATFV 259

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
             L AC+ + AL  G+++H+Y+  R   S   +VGNA+++MY KCG V  A +VF+ +A 
Sbjct: 260 AALGACAQLGALDTGRWLHAYMG-RMGHSADGVVGNALLDMYAKCGAVDQATEVFDGMAR 318

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           +D  +++++I GLAM+G G  AL LF+ M    V P++VT + +++AC H GLV++GL  
Sbjct: 319 RDVYTYTSMILGLAMHGRGEDALSLFAGMQRAGVTPNEVTLLGVLTACCHAGLVEEGLQQ 378

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
             AM       P+++HY CVVDM GRAG L++AE  I  MP+ ++  +W +LL ACR H 
Sbjct: 379 LNAMPE-----PRIEHYGCVVDMLGRAGRLDKAEELIAAMPVHSDALIWSSLLAACRAHG 433

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           + E  +R+ +  V       G + LMSNT+A   R  +  K+R ++RR  + K  GCS I
Sbjct: 434 DVERAERVMRRRVAD--ADAGDYVLMSNTYASNGRHGEAVKVRGQMRRNEIDKVPGCSLI 491

Query: 455 EVN 457
           E++
Sbjct: 492 EID 494



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 148/287 (51%), Gaps = 13/287 (4%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV-VFPDVVSWTTIISGLSKC 89
           E H  V E     D+   N+L+  Y    D  +AH+ F  + V  +VVSW T++S  ++ 
Sbjct: 174 EAHRRVAERKVAMDVVAWNALVDMYAKCGDAAAAHRWFRRMPVKKNVVSWNTMMSAFARA 233

Query: 90  GFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
           G  +EA+ +F  +    V+P+  T V+ L AC+ L +   G+ +HA+  R  +  + ++ 
Sbjct: 234 GELEEALALFQEMQAAAVRPDDATFVAALGACAQLGALDTGRWLHAYMGRMGHSADGVVG 293

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           NA+LD Y +CG++     +F  M +R+V ++T+MI G A  G  ++A+S+F  M++    
Sbjct: 294 NALLDMYAKCGAVDQATEVFDGMARRDVYTYTSMILGLAMHGRGEDALSLFAGMQRAG-V 352

Query: 207 EPNEATLVNVLSACSSISALSFG-KYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
            PNE TL+ VL+AC     +  G + +++    R +          V++M  + G +  A
Sbjct: 353 TPNEVTLLGVLTACCHAGLVEEGLQQLNAMPEPRIEHY------GCVVDMLGRAGRLDKA 406

Query: 266 IQVF-NMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD 311
            ++   M  + D + WS++++    +G   +A ++    + +A   D
Sbjct: 407 EELIAAMPVHSDALIWSSLLAACRAHGDVERAERVMRRRVADADAGD 453


>gi|115477124|ref|NP_001062158.1| Os08g0500600 [Oryza sativa Japonica Group]
 gi|42407356|dbj|BAD08817.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|42407750|dbj|BAD08896.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113624127|dbj|BAF24072.1| Os08g0500600 [Oryza sativa Japonica Group]
          Length = 429

 Score =  271 bits (693), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 145/411 (35%), Positives = 247/411 (60%), Gaps = 10/411 (2%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID 103
           D+   N+++  YV   ++ SA ++F+ +   + VSW+T++ G +  G    A +MF   D
Sbjct: 23  DVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMF---D 79

Query: 104 VKPN-ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC 162
             P     +V+  S  +    H L   +       +   N++  NA+L  Y     +   
Sbjct: 80  RMPAIGRNVVTWNSMVTGFARHGL-LPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGA 138

Query: 163 GYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS 222
             LF  MP+++VVSWT MI GYA+ G  ++ + +F+ M+     +PNE T+V+VLSAC++
Sbjct: 139 RELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACAN 198

Query: 223 ISALSFGKYVHSYISTRYDLSVSNL--VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
           ++AL  G++VH++I  ++ + ++N   +G A+I+MY KCG   IA+++FN L  K+  +W
Sbjct: 199 LTALEEGRWVHAFID-KHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAW 257

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340
           + +I+ LAMNG  R ++  F  M      P+D+TF+ +++ACSHGGLVD+G   F++M++
Sbjct: 258 NALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMAS 317

Query: 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFD 400
              + P+++HY C+VDM GRAGLLEEAE  IR MP+  +  V+GALL ACR+H+  ++ +
Sbjct: 318 TCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMPMAPDVMVFGALLGACRMHKRFDVAE 377

Query: 401 RIRQDL--VNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKT 449
           R++ ++  +N      G   L+S+ +A A +W D  + R  ++R G++K T
Sbjct: 378 RVQSEIHSLNLNAQQSGCHVLISDIYAAAGKWFDVLEARQVVQRSGIRKWT 428


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  271 bits (693), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 149/450 (33%), Positives = 251/450 (55%), Gaps = 5/450 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N+YTF  ALKA         A  +H  +++  ++ D  +   LL  Y  + D+  A ++F
Sbjct: 246 NNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVF 305

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           N +   DVV W+ +I+   + GF  EA+D+F  +    V PN  TL S+L+ C+      
Sbjct: 306 NEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSG 365

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG+ +H   ++   + +I + NA++D Y +C  + +   LF ++  +N VSW T+I GY 
Sbjct: 366 LGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYE 425

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G   +A S+F+E  +  +    E T  + L AC+S++++  G  VH  ++ + + +  
Sbjct: 426 NLGEGGKAFSMFREALRN-QVSVTEVTFSSALGACASLASMDLGVQVHG-LAIKTNNAKK 483

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V N++I+MY KCGD+  A  VFN +   D  SW+ +ISG + +G GRQAL++  +M  
Sbjct: 484 VAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKD 543

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
               P+ +TF+ ++S CS+ GL+DQG   F++M   + I P ++HY C+V + GR+G L+
Sbjct: 544 RDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLD 603

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           +A   I  +P E    +W A+L+A     N+E   R  ++++        T+ L+SN +A
Sbjct: 604 KAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYA 663

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
           GA +W +   IR  ++ MG+KK+ G SWIE
Sbjct: 664 GAKQWANVASIRKSMKEMGVKKEPGLSWIE 693



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 191/389 (49%), Gaps = 9/389 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N + FT  LK        +    +H+ +++ G+  + F+  +L++ Y     + SA  +F
Sbjct: 145 NPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVF 204

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHK 125
             ++  D+V W  I+S   + G+ ++++ +   + +    PN  T  + L A   L +  
Sbjct: 205 EGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFD 264

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
             K +H   L+     +  +   +L  Y + G ++    +F +MPK +VV W+ MI  + 
Sbjct: 265 FAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFC 324

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSV 244
           + GFC EAV +F  M +     PNE TL ++L+ C+       G+ +H   +   +DL +
Sbjct: 325 QNGFCNEAVDLFIRMREAF-VVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDI 383

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
              V NA+I++Y KC  +  A+++F  L+ K+++SW+TVI G    G G +A  +F   +
Sbjct: 384 --YVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREAL 441

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
            N V   +VTF + + AC+    +D G +    ++       ++     ++DMY + G +
Sbjct: 442 RNQVSVTEVTFSSALGACASLASMDLG-VQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDI 500

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIH 393
           + A++   EM    + + W AL++    H
Sbjct: 501 KFAQSVFNEMET-IDVASWNALISGYSTH 528



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 96/420 (22%), Positives = 183/420 (43%), Gaps = 24/420 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + + +   L+ C   +    A  IH  +++ G   D+F  N LL+ YV       A  +F
Sbjct: 48  DSHAYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLF 107

Query: 69  NSVVFPDVVSWTTIISGLS-------KCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSL 121
           + +   + VS+ T+  G +           H+E  ++        N +   S L    SL
Sbjct: 108 DEMPERNNVSFVTLAQGYACQDPIGLYSRLHREGHEL--------NPHVFTSFLKLFVSL 159

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
              ++   +H+  ++   ++N  +  A+++ Y  CGS+ S   +F  +  +++V W  ++
Sbjct: 160 DKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIV 219

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRY 240
             Y E G+ ++++ +   M +     PN  T    L A   + A  F K VH  I  T Y
Sbjct: 220 SCYVENGYFEDSLKLLSCM-RMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCY 278

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
            L     VG  ++ +Y + GD+  A +VFN +   D + WS +I+    NG   +A+ LF
Sbjct: 279 VLDPR--VGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLF 336

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA--CVVDMY 358
             M    V P++ T  ++++ C+ G     G  L      V ++   +  Y    ++D+Y
Sbjct: 337 IRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLH---GLVVKVGFDLDIYVSNALIDVY 393

Query: 359 GRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFA 418
            +   ++ A     E+  + E S    ++    +    + F   R+ L N+  V+  TF+
Sbjct: 394 AKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFS 453



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 127/296 (42%), Gaps = 32/296 (10%)

Query: 100 CGIDVKPNANTLVSVLSACSSLVSHKLG---------------KAIHAHSLRNLNENNII 144
           CG  VK  A  L S  S    L SH  G               KAIH   L+  +  ++ 
Sbjct: 26  CGFSVKTAALDLESSDSIIPGLDSHAYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLF 85

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
             N +L+ Y++ G       LF +MP+RN VS+ T+  GYA    C++ + ++  + +  
Sbjct: 86  ATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGYA----CQDPIGLYSRLHREG 141

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
             E N     + L    S+       ++HS I  +     +  VG A+IN Y  CG V  
Sbjct: 142 H-ELNPHVFTSFLKLFVSLDKAEICPWLHSPI-VKLGYDSNAFVGAALINAYSVCGSVDS 199

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
           A  VF  +  KD + W+ ++S    NG    +L+L S M +    P++ TF   + A   
Sbjct: 200 ARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIG 259

Query: 325 GGLVD-----QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP 375
            G  D      G IL     T Y + P++     ++ +Y + G + +A     EMP
Sbjct: 260 LGAFDFAKGVHGQIL----KTCYVLDPRVG--VGLLQLYTQLGDMSDAFKVFNEMP 309



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 3/117 (2%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S    TF+ AL AC+        +++H   I+  +   + + NSL+  Y    DI  A  
Sbjct: 446 SVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQS 505

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEA---IDMFCGIDVKPNANTLVSVLSACSS 120
           +FN +   DV SW  +ISG S  G  ++A   +D+    D KPN  T + VLS CS+
Sbjct: 506 VFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSN 562


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  271 bits (693), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 150/426 (35%), Positives = 242/426 (56%), Gaps = 11/426 (2%)

Query: 35  HVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKE 94
           H+ +     D    N+LL  +    D   A ++F S+   DVVSW T++SGLSK G  +E
Sbjct: 70  HLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEE 129

Query: 95  AIDMFCGIDVKPNA--NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNEN-NIILDNAILD 151
           A  +F  + V+ +   N +VS   ACS  +S            RN  E  + +L  A++ 
Sbjct: 130 AKAVFLAMPVRNSVSWNAMVSGF-ACSRDMSAA------EEWFRNAPEKGDAVLWTAMVS 182

Query: 152 FYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEA 211
            Y+  G++      F  MP RN+VSW  ++ GY +     +A+ +F+ M +    +PN +
Sbjct: 183 GYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNAS 242

Query: 212 TLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 271
           TL +VL  CS++SAL FGK +H +   +  LS +  VG ++++MY KCGD+  A ++F  
Sbjct: 243 TLSSVLLGCSNLSALGFGKQIHQWC-MKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGE 301

Query: 272 LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
           +  +D ++W+ +ISG A +G G++A+ LF  M    V P+ +TF+A+++AC H GL D G
Sbjct: 302 MHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFG 361

Query: 332 LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACR 391
           +  F+ M  +Y I P++ HY+C+VD+  RAG LE A   IR MP E   S +G LL ACR
Sbjct: 362 IRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACR 421

Query: 392 IHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGC 451
           +++N E  +     L+ K   S G +  ++N +AGA++W+D +++R  ++   + K  G 
Sbjct: 422 VYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGY 481

Query: 452 SWIEVN 457
           SWIE+ 
Sbjct: 482 SWIEIK 487



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 94/225 (41%), Gaps = 37/225 (16%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T +  L  CS         +IH   ++     ++ +  SL+  Y    D+ SA ++F
Sbjct: 240 NASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLF 299

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   DVV+W  +ISG ++ G  KEAI++F  +    V+PN  T V+VL+AC       
Sbjct: 300 GEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTAC------- 352

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
               IH                 + DF IRC        L+   P+  V  ++ M+    
Sbjct: 353 ----IH---------------TGLCDFGIRC--FEGMQELYGIEPR--VDHYSCMVDLLC 389

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGK 230
             G  + AV + + M      EP+ +    +L+AC     L F +
Sbjct: 390 RAGKLERAVDLIRSM----PFEPHPSAYGTLLAACRVYKNLEFAE 430



 Score = 42.0 bits (97), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 59/320 (18%), Positives = 124/320 (38%), Gaps = 63/320 (19%)

Query: 154 IRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER-GFCKEAVSVFQEMEKTKEAEPNEA- 211
           +R G L      F   P++   ++  ++ GYA   G   +A  +F  +        N   
Sbjct: 28  VRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLL 87

Query: 212 ----------------------------TLVNVLSACSSI-------------SALSFGK 230
                                       T+V+ LS   ++             +++S+  
Sbjct: 88  SCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNA 147

Query: 231 YVHSYISTRYDLSVSN------------LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI 278
            V  +  +R D+S +             ++  A+++ Y+  G+V  AI+ F  +  ++ +
Sbjct: 148 MVSGFACSR-DMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLV 206

Query: 279 SWSTVISGLAMNGCGRQALQLFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKA 337
           SW+ V++G   N     AL+LF  M+  A V P+  T  +++  CS+   +  G  + + 
Sbjct: 207 SWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQW 266

Query: 338 MSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
              +  +   +     +V MY + G L  A     EM    +   W A+++    H + +
Sbjct: 267 CMKL-PLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR-DVVAWNAMISGYAQHGDGK 324

Query: 398 ----MFDRIRQDLVNKKGVS 413
               +F+R++ + V    ++
Sbjct: 325 EAINLFERMKDEGVEPNWIT 344


>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
 gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  271 bits (693), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 162/480 (33%), Positives = 258/480 (53%), Gaps = 42/480 (8%)

Query: 18  KACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVT-VKDIFSAHQIFNSVVFPDV 76
           K C+     QK   IHA +I+ G   D    + +L F  +   DI  A+ +F  +  P++
Sbjct: 4   KNCTSMKDLQK---IHAQLIKTGLAKDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNL 60

Query: 77  VSWTTIISGLSKCGFHKEAID-----MFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIH 131
             W TII G S+      AI      MF     +P   T  SV  A + L     G  +H
Sbjct: 61  FVWNTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLH 120

Query: 132 AHSLRNLNENNIILDNAILDFYIRCG-------------------------SLASCG--- 163
              ++   EN+  + N IL+ Y+ CG                          LA CG   
Sbjct: 121 GRVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEID 180

Query: 164 ---YLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
               LF KM  RN VSW +MI GY  +G   EA+ +F  M++ +  +P+E T+V++L+AC
Sbjct: 181 KSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQE-EGIKPSEFTMVSLLNAC 239

Query: 221 SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
           + + AL  G+++H YI  + + +++++V  A+I+MY KCG +  A+QVF     K    W
Sbjct: 240 ACLGALRQGEWIHDYI-VKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCW 298

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340
           +++I GLAM+G G +A++LFS +  + + PD V+FI +++AC+H G+VD+    F  MS 
Sbjct: 299 NSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSE 358

Query: 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFD 400
            Y+I P ++HY+C+VD+ GRAGLLEEAE  I+ MP+  +  +WG+LL++CR + N EM  
Sbjct: 359 TYKIEPSIKHYSCMVDVLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSSCREYGNIEMAK 418

Query: 401 RIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +  + +         +F L+SN +A  + +E+  + R  ++   + K+ GCS IEVN  +
Sbjct: 419 QAAKRVNELDPNESSSFILLSNVYAAHNHFEEAIEQRLSLKEKQMDKEPGCSLIEVNGEV 478



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 173/357 (48%), Gaps = 41/357 (11%)

Query: 1   MLSCPSSY-NHYTFTQALKA-CSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV 58
           M + P++     T+    KA   L   H+ A ++H  VI+ G  +D FIQN++L+ YV  
Sbjct: 87  MFTSPTTQPQRLTYPSVFKAYAQLGLAHEGA-QLHGRVIKLGLENDQFIQNTILNMYVNC 145

Query: 59  KDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG--------FHK----------------- 93
             +  A +IF+     DVV+W T+I GL+KCG        F K                 
Sbjct: 146 GFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYV 205

Query: 94  ------EAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
                 EA+++F  +    +KP+  T+VS+L+AC+ L + + G+ IH + ++N    N I
Sbjct: 206 RKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSI 265

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           +  AI+D Y +CGS+     +F   PK+ +  W ++I G A  G   EAV +F ++E + 
Sbjct: 266 VITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSN 325

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
             +P+  + + VL+AC+    +   K     +S  Y +  S    + ++++  + G +  
Sbjct: 326 -LKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSETYKIEPSIKHYSCMVDVLGRAGLLEE 384

Query: 265 AIQVF-NMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALIS 320
           A ++  +M    D I W +++S     G    A Q  +   +N + P++ +   L+S
Sbjct: 385 AEELIKSMPVNPDAIIWGSLLSSCREYGNIEMAKQ--AAKRVNELDPNESSSFILLS 439


>gi|242076488|ref|XP_002448180.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
 gi|241939363|gb|EES12508.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
          Length = 1029

 Score =  271 bits (693), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 150/454 (33%), Positives = 251/454 (55%), Gaps = 8/454 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +  +F  A+ ACS     +   +IH   I+Y    +  + +SL+  Y    D+ S+ ++ 
Sbjct: 528 DEVSFATAINACSNIRATETGKQIHCASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVL 587

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
             V    +V    +I+GL +     EAI++F  +     KP+  T  S+LS C+  VS  
Sbjct: 588 AHVDASSMVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASILSGCTGPVSSV 647

Query: 126 LGKAIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYLFVKMPK-RNVVSWTTMIGG 183
           +GK +H+++L++ L   +  L  +++  Y++C  L     L  ++P  +N+V WT  I G
Sbjct: 648 IGKQVHSYTLKSALLNQDTSLGISLVGIYLKCKLLEDANKLLAEVPDHKNLVEWTATISG 707

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           YA+ G+  +++ +F  M ++ +   +EAT  +VL ACS I+AL+ GK +H  I     +S
Sbjct: 708 YAQNGYSDQSLVMFWRM-RSHDVRSDEATFASVLKACSEIAALTDGKEIHGLIIKSGFVS 766

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI-SWSTVISGLAMNGCGRQALQLFSL 302
                 +A+++MY KCGDV  + ++F  L  K  I  W+++I G A NG   +AL LF  
Sbjct: 767 YET-AASALMDMYSKCGDVISSFEIFKELKNKQNIMPWNSMIVGFAKNGYANEALLLFQK 825

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
           M  + + PD+VT + ++ ACSH GL+ +G  LF +MS VY IVP++ HYAC++D+ GR G
Sbjct: 826 MQESQLKPDEVTLLGVLIACSHAGLISEGRNLFDSMSQVYGIVPRVDHYACLIDLLGRGG 885

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSN 422
            L+EA+  I ++P  A+  +W   L AC++H+++E      + LV  +     T+  +S+
Sbjct: 886 HLQEAQEVIDQLPFRADGVIWATFLAACQMHKDEERGKVAAKKLVEMEPQRSSTYVFLSS 945

Query: 423 TFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
             A A  W +    R+ +R  G+ K  GCSWI V
Sbjct: 946 LHAAAGNWVEAKVAREAMREKGVMKFPGCSWITV 979



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 200/396 (50%), Gaps = 6/396 (1%)

Query: 26  HQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISG 85
           +Q+AL + + + + G   D     +++    ++  +  A  +   +  P  V+W  +IS 
Sbjct: 242 YQQALALFSRMEKMGSAPDQVTYVTIISTLASMGRLSDARTLLKRIQMPSTVAWNAVISS 301

Query: 86  LSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN 142
            S+ G   E   ++  +  +   P  +T  S+LSA +S+ +   G+ IHA ++++  + N
Sbjct: 302 YSQSGLESEVFGLYKDMKRQGLMPTRSTFASMLSAAASMTAFDEGQQIHAAAVKHGLDAN 361

Query: 143 IILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202
           + + +++++ Y++ G ++    +F    ++N+V W  M+ G+ +    +E + +FQ M +
Sbjct: 362 VFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRR 421

Query: 203 TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 262
             + E ++ T V+VL AC ++ +L  G+ VH  I+ +  +     V NA+++MY K G +
Sbjct: 422 A-DLEADDFTFVSVLGACINLDSLDIGRQVHC-ITIKNSMDADLFVANAMLDMYSKLGAI 479

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
            +A  +F+++  KD +SW+ +I GLA N    +A+ +   M    + PD+V+F   I+AC
Sbjct: 480 DVAKALFSLIPGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINAC 539

Query: 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
           S+    + G  +  A S  Y +       + ++D+Y + G +E +   +  +   +   +
Sbjct: 540 SNIRATETGKQIHCA-SIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSMVPI 598

Query: 383 WGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFA 418
              +    + +R DE  +  +Q L +    S  TFA
Sbjct: 599 NALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFA 634



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 196/383 (51%), Gaps = 9/383 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           TF   L A +      +  +IHA  +++G   ++F+ +SL++ YV    I  A ++F+  
Sbjct: 329 TFASMLSAAASMTAFDEGQQIHAAAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFS 388

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              ++V W  ++ G  +    +E I MF  +   D++ +  T VSVL AC +L S  +G+
Sbjct: 389 TEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADDFTFVSVLGACINLDSLDIGR 448

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H  +++N  + ++ + NA+LD Y + G++     LF  +P ++ VSW  +I G A   
Sbjct: 449 QVHCITIKNSMDADLFVANAMLDMYSKLGAIDVAKALFSLIPGKDSVSWNALIVGLAHNE 508

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
             +EAV + + M K     P+E +    ++ACS+I A   GK +H   S +Y++  ++ V
Sbjct: 509 EEEEAVYMLKRM-KCYGIAPDEVSFATAINACSNIRATETGKQIHC-ASIKYNVCSNHAV 566

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
           G+++I++Y K GDV  + +V   +     +  + +I+GL  N    +A++LF  ++ +  
Sbjct: 567 GSSLIDLYSKFGDVESSRKVLAHVDASSMVPINALITGLVQNNREDEAIELFQQVLKDGF 626

Query: 309 FPDDVTFIALISACSH--GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
            P + TF +++S C+     ++ + +  +   S +      +     +V +Y +  LLE+
Sbjct: 627 KPSNFTFASILSGCTGPVSSVIGKQVHSYTLKSALLNQDTSLG--ISLVGIYLKCKLLED 684

Query: 367 AEAFIREMPIEAEWSVWGALLNA 389
           A   + E+P       W A ++ 
Sbjct: 685 ANKLLAEVPDHKNLVEWTATISG 707



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 182/384 (47%), Gaps = 46/384 (11%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +     L ACS     ++  ++H  V++ G     F Q  L+  Y    ++  A ++F
Sbjct: 159 DQFGLAVVLSACSRLGALEQGRQVHCDVLKSGFCSSAFCQAGLVDMYAKCVEVKDARRVF 218

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
           + +  PD + W ++I+G  + G +++A+ +F  ++   +A   V+ ++  S+L S  +G+
Sbjct: 219 DGIACPDTICWASMIAGYHRVGRYQQALALFSRMEKMGSAPDQVTYVTIISTLAS--MGR 276

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
              A +L                               ++MP  + V+W  +I  Y++ G
Sbjct: 277 LSDARTLLKR----------------------------IQMP--STVAWNAVISSYSQSG 306

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
              E   ++++M K +   P  +T  ++LSA +S++A   G+ +H+  + ++ L  +  V
Sbjct: 307 LESEVFGLYKDM-KRQGLMPTRSTFASMLSAAASMTAFDEGQQIHA-AAVKHGLDANVFV 364

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
           G+++IN+YVK G +  A +VF+    K+ + W+ ++ G   N    + +Q+F  M    +
Sbjct: 365 GSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADL 424

Query: 309 FPDDVTFIALISACSHGGLVDQG-----LILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
             DD TF++++ AC +   +D G     + +  +M     +   M      +DMY + G 
Sbjct: 425 EADDFTFVSVLGACINLDSLDIGRQVHCITIKNSMDADLFVANAM------LDMYSKLGA 478

Query: 364 LEEAEAFIREMPIEAEWSVWGALL 387
           ++ A+A    +P +   S W AL+
Sbjct: 479 IDVAKALFSLIPGKDSVS-WNALI 501



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 118/250 (47%), Gaps = 14/250 (5%)

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKM-----PKRNVVSWTTMIGGY 184
           +HA  LR        L +A++D Y R G +   GY +  +        +  + ++++  +
Sbjct: 78  LHARVLRLGLPLRGRLGDALVDLYGRSGRV---GYAWRALGCCTGAPASGAAASSVLSCH 134

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           A  G  ++ +  FQ +  +    P++  L  VLSACS + AL  G+ VH  +  +     
Sbjct: 135 ARSGSPRDVLDAFQRLRCSIGGTPDQFGLAVVLSACSRLGALEQGRQVHCDV-LKSGFCS 193

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           S      +++MY KC +V  A +VF+ +A  D I W+++I+G    G  +QAL LFS M 
Sbjct: 194 SAFCQAGLVDMYAKCVEVKDARRVFDGIACPDTICWASMIAGYHRVGRYQQALALFSRME 253

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
                PD VT++ +IS  +  G +     L K +      +P    +  V+  Y ++GL 
Sbjct: 254 KMGSAPDQVTYVTIISTLASMGRLSDARTLLKRIQ-----MPSTVAWNAVISSYSQSGLE 308

Query: 365 EEAEAFIREM 374
            E     ++M
Sbjct: 309 SEVFGLYKDM 318



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 138/310 (44%), Gaps = 43/310 (13%)

Query: 82  IISGLSKCGFHKEAIDMF----CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRN 137
           ++S  ++ G  ++ +D F    C I   P+   L  VLSACS L + + G+ +H   L++
Sbjct: 130 VLSCHARSGSPRDVLDAFQRLRCSIGGTPDQFGLAVVLSACSRLGALEQGRQVHCDVLKS 189

Query: 138 LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVF 197
              ++      ++D Y +C  +     +F  +   + + W +MI GY   G  ++A+++F
Sbjct: 190 GFCSSAFCQAGLVDMYAKCVEVKDARRVFDGIACPDTICWASMIAGYHRVGRYQQALALF 249

Query: 198 QEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYV 257
             MEK   A P++ T V ++S  +S+  LS  + +   I        S +  NAVI+ Y 
Sbjct: 250 SRMEKMGSA-PDQVTYVTIISTLASMGRLSDARTLLKRIQM-----PSTVAWNAVISSYS 303

Query: 258 KCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIA 317
           +    G+  +VF +  YKD                          M    + P   TF +
Sbjct: 304 QS---GLESEVFGL--YKD--------------------------MKRQGLMPTRSTFAS 332

Query: 318 LISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIE 377
           ++SA +     D+G  +  A +  + +   +   + ++++Y + G + +A+  + +   E
Sbjct: 333 MLSAAASMTAFDEGQQIHAA-AVKHGLDANVFVGSSLINLYVKHGCISDAKK-VFDFSTE 390

Query: 378 AEWSVWGALL 387
               +W A+L
Sbjct: 391 KNIVMWNAML 400


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  271 bits (693), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 150/415 (36%), Positives = 243/415 (58%), Gaps = 7/415 (1%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID 103
           D    N+LL  +    DI  A ++F+++   DV SW T++SGLSK G  +EA  MF  + 
Sbjct: 71  DAVSYNTLLSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMP 130

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNEN-NIILDNAILDFYIRCGSLASC 162
            + NA +  ++++A +S  S  +G A   +  RN  E  + IL  A++  Y+  G++   
Sbjct: 131 AR-NAVSWNAMVAARAS--SGDMGAA--ENLFRNAPEKTDAILWTAMVSGYMDTGNVQKA 185

Query: 163 GYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS 222
              F  MP RN+VSW  ++ GY +     +A+ VF+ M +    +PN +TL +VL  CS+
Sbjct: 186 MEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSN 245

Query: 223 ISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWST 282
           +SAL FG+ VH +   +  L  S  VG ++++MY KCGD+  A ++F+ +  KD ++W+ 
Sbjct: 246 LSALGFGRQVHQWC-MKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNA 304

Query: 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 342
           +ISG A +G GR+A++LF  M    V PD +T +A+++AC H GL D G+  F+ M   Y
Sbjct: 305 MISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAY 364

Query: 343 EIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRI 402
            I PQ+ HY+C+VD+  RAGLLE A   I  MP E   S +G LL ACR+++N E  +  
Sbjct: 365 NIEPQVDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFA 424

Query: 403 RQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            + L+ +   + G +  ++N +A A+RW+D +++R  ++   + K  G SW+E+ 
Sbjct: 425 ARKLIEQDPQNAGAYVQLANIYAVANRWDDVSRVRRWMKDNAVVKTPGYSWMEIK 479



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 91/227 (40%), Gaps = 37/227 (16%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T +  L  CS         ++H   ++      I +  SLL  Y    D+  A ++F
Sbjct: 232 NPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLF 291

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           + +   D+V+W  +ISG ++ G  ++AI +F  +    V P+  TL++VL+AC       
Sbjct: 292 DEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTAC------- 344

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
               IH                 + DF I+C       Y      +  V  ++ M+    
Sbjct: 345 ----IH---------------TGLCDFGIQCFETMQEAYNI----EPQVDHYSCMVDLLC 381

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYV 232
             G  + AV++   M      EP+ +    +L+AC     L F ++ 
Sbjct: 382 RAGLLERAVNMIHSM----PFEPHPSAYGTLLTACRVYKNLEFAEFA 424


>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
          Length = 512

 Score =  271 bits (693), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 157/467 (33%), Positives = 251/467 (53%), Gaps = 38/467 (8%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVK--DIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           +I +H+   G L D F    ++ F       DI  A+ +F S+       W T++   + 
Sbjct: 6   QIQSHLTVSGTLFDPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRAFTD 65

Query: 89  CGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
                  + ++         PN  T   +L AC+ L     G  +HA ++R   E    +
Sbjct: 66  KKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFV 125

Query: 146 DNAILDFYIRCGSLASC--------------------GY-----------LFVKMPKRNV 174
            N +L  Y  C  + S                     GY           LF +MP++N 
Sbjct: 126 QNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNA 185

Query: 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
           VSW+ MI GYA+ G  +EA+ +F +M+      PN   +V  L+AC+ + AL  G+++H+
Sbjct: 186 VSWSAMITGYAQIGLFREALELFNDMQ-IAGFRPNHGAIVGALTACAFLGALDQGRWIHA 244

Query: 235 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
           Y+  R  + +  ++G A+I+MY KCG V  A +VF+ +  +D  +++++ISGLA +G   
Sbjct: 245 YVD-RNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSA 303

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
            A+++F+ M    V P++VTFI L+SACS  GLV++GL +FK+M+ +Y I P +QHY C+
Sbjct: 304 TAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCL 363

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414
           VD+ GRAG+LE+A+  +REMP+E +  V GALLNACR+H + E+     + L  +     
Sbjct: 364 VDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVECLAERSLDHG 423

Query: 415 GTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           G   L+SN +A A++WED  K+R  +    +KK  GCS IEV+ ++F
Sbjct: 424 GVHVLLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEVDGAVF 470



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 134/277 (48%), Gaps = 35/277 (12%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           MLS     N+YTF+  L+AC+        + +HA  +  G     F+QN LLH Y +   
Sbjct: 79  MLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNC 138

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCG------------------------------ 90
           + SA ++F+  V  DVV+WT +I+G +K G                              
Sbjct: 139 MDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQI 198

Query: 91  -FHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
              +EA+++F  + +   +PN   +V  L+AC+ L +   G+ IHA+  RN    + IL 
Sbjct: 199 GLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILG 258

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
            A++D Y +CG + +   +F +M  R+V ++T++I G A  G    A+ +F  M+  +  
Sbjct: 259 TALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQ-NEGV 317

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
            PNE T + +LSACS +  +  G  +   ++  Y + 
Sbjct: 318 CPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIE 354


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  271 bits (693), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 152/459 (33%), Positives = 261/459 (56%), Gaps = 9/459 (1%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           +++ + +T  L A ++        +IH   ++ G L    + N+L+  Y     +  A +
Sbjct: 211 AHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALK 270

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVS 123
            F      D ++W+ +I+G ++ G   EA+++F  + +   KP+  T V V++ACS + +
Sbjct: 271 TFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGA 330

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSL--ASCGYLFVKMPKRNVVSWTTMI 181
            + GK IH +SL+   E  I    A++D Y +CGSL  A  G+ ++K P  ++V WT+MI
Sbjct: 331 LEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEP--DIVLWTSMI 388

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
            GYA+ G  + A++++  M+  +   P+E T+ +VL ACSS++AL  GK +H+  + +Y 
Sbjct: 389 SGYAQNGENETALTLYCRMQMER-IMPHELTMASVLRACSSLAALEQGKQIHAQ-TIKYG 446

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
            S+   +G+A+  MY KCG +     VF  +  +D ++W+ +ISGL+ NG G +AL+LF 
Sbjct: 447 FSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFE 506

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            +      PD VTF+ ++SACSH GLV++G + F+ M   + IVP+++HYAC+VD+  RA
Sbjct: 507 ELRHGTTKPDYVTFVNVLSACSHMGLVERGKVYFRMMLDEFGIVPRVEHYACMVDILSRA 566

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           G L E + FI    I+    +W  LL ACR +RN E+     + L+         + L+S
Sbjct: 567 GKLHETKEFIESATIDHGMCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYILLS 626

Query: 422 NTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           + +    R +D  ++R  ++  G+ K+ GCSWIE+   +
Sbjct: 627 SIYTALGRSDDVERVRRLMKLRGVNKEPGCSWIELKSQV 665



 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 185/366 (50%), Gaps = 10/366 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
            H +F   L  C+     QK   IHA ++  G    +++ NSL++ Y     I  A  +F
Sbjct: 9   QHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVF 68

Query: 69  NSVVFPDVVSWTTIISGLSKCG-----FHKEAIDMFCGIDVKPNANTLVSVLSACSSLVS 123
            S+   DVVSW  +I+G S+ G     F  E        +  PN +T   V +A SS   
Sbjct: 69  ESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPE 128

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
              G   HA +++  N  ++ + +++++ Y + G +     +F  +P+RN VSW T+I G
Sbjct: 129 TFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISG 188

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           YA      EA  +F  M + +E   ++    +VLSA +    + +GK +H        LS
Sbjct: 189 YAMERMAFEAWELFXLMRR-EEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLS 247

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           +++ VGNA++ MY KCG +  A++ F +   KD I+WS +I+G A  G   +AL LF  M
Sbjct: 248 IAS-VGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNM 306

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
            +N   P + TF+ +I+ACS  G +++G  I   ++   YE   Q+     +VDMY + G
Sbjct: 307 HLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYEC--QIYFMTALVDMYAKCG 364

Query: 363 LLEEAE 368
            L +A 
Sbjct: 365 SLVDAR 370



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 116/404 (28%), Positives = 205/404 (50%), Gaps = 13/404 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +TF+    A S +      L+ HA  I+  + +D+F+ +SL++ Y  +  +  A ++F
Sbjct: 112 NGHTFSGVFTAASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVF 171

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANT---LVSVLSACSSLVSHK 125
           +++   + VSW TIISG +      EA ++F  +  +  A+      SVLSA +      
Sbjct: 172 DTIPERNTVSWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVH 231

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK IH  +L+N   +   + NA++  Y +CG L      F     ++ ++W+ MI GYA
Sbjct: 232 YGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYA 291

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSV 244
           + G   EA+++F  M      +P+E T V V++ACS I AL  GK +H Y +   Y+  +
Sbjct: 292 QAGDSHEALNLFYNMHLNGN-KPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQI 350

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
             +   A+++MY KCG +  A + F+ L   D + W+++ISG A NG    AL L+  M 
Sbjct: 351 YFMT--ALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQ 408

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
           +  + P ++T  +++ ACS    ++QG  +  A +  Y    ++   + +  MY + G L
Sbjct: 409 MERIMPHELTMASVLRACSSLAALEQGKQI-HAQTIKYGFSLEVPIGSALSTMYAKCGSL 467

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIH----RNDEMFDRIRQ 404
           E+     R MP   +   W A+++    +    +  E+F+ +R 
Sbjct: 468 EDGNLVFRRMP-SRDIMTWNAMISGLSQNGEGLKALELFEELRH 510



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 149/297 (50%), Gaps = 24/297 (8%)

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCG 163
           + P   + V +L  C+     + GKAIHA  LR  + +++ L N++++ Y +CGS+    
Sbjct: 6   LPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAK 65

Query: 164 YLFVKMPKRNVVSWTTMIGGYAERGFCKEA--VSVFQEMEKTKEAEPNEATLVNVLSACS 221
            +F  +  ++VVSW  +I GY+++G    +  + +FQ M + +   PN  T   V +A S
Sbjct: 66  LVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRM-RAENTLPNGHTFSGVFTAAS 124

Query: 222 SISALSFGKYVHSY---ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI 278
           S      G   H+     S  YD+     VG+++INMY K G +  A +VF+ +  ++ +
Sbjct: 125 SSPETFGGLQAHALAIKTSNFYDV----FVGSSLINMYCKIGCMLDARKVFDTIPERNTV 180

Query: 279 SWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG-----LI 333
           SW+T+ISG AM     +A +LF LM       D   + +++SA +   LV  G     L 
Sbjct: 181 SWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLA 240

Query: 334 LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA-EAFIREMPIEAEWSVWGALLNA 389
           L   + ++  +   +      V MYG+ G L++A + F  E+  + +   W A++  
Sbjct: 241 LKNGLLSIASVGNAL------VTMYGKCGCLDDALKTF--ELSGDKDDITWSAMITG 289


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  271 bits (693), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 162/499 (32%), Positives = 256/499 (51%), Gaps = 40/499 (8%)

Query: 2   LSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVI--EYGHLHDIFIQNSLLHFYVTVK 59
           L+    YNH      L  C+     ++  EI A +I      +    I    +    +  
Sbjct: 13  LAVLHDYNHRKTIHLLLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHG 72

Query: 60  DIFSAHQIFNSVV-FPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN-----TLVS 113
           ++  +  IFN  + FP++ ++  ++   S+       I  F    V PNA      T  S
Sbjct: 73  NLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTS 132

Query: 114 VLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIR--CGSLAS---------- 161
           VL AC+ L     G+ +H    +   E+N+ + N+++D Y +  C  +A           
Sbjct: 133 VLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRD 192

Query: 162 --------CGY-----------LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202
                    GY           +F  M ++N+VSW+TMI GYA      +A+ +F++M+ 
Sbjct: 193 VVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQH 252

Query: 203 TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 262
                PN+ TLV+VLSAC+ + AL  GK++H +I  R  + V   +GNA+ +MY KCG V
Sbjct: 253 EGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIR-RNKIEVGLFLGNALADMYAKCGCV 311

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
             A  VF+ +  +D ISWS +I GLAM G   +A   F+ MI + + P+D++F+ L++AC
Sbjct: 312 LEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTAC 371

Query: 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
           +H GLVD+GL  F  M  VY I P+++HY CVVD+  RAG L++AE+ I  MP++    V
Sbjct: 372 THAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIV 431

Query: 383 WGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442
           WGALL  CRI+++ E  +R+   ++       G+   ++N +A   R +D    R  +R 
Sbjct: 432 WGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRD 491

Query: 443 MGLKKKTGCSWIEVNPSIF 461
               K  GCSWIE+N S++
Sbjct: 492 NKSMKTPGCSWIEINNSVY 510


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  271 bits (693), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 153/492 (31%), Positives = 264/492 (53%), Gaps = 52/492 (10%)

Query: 17  LKACSLAHPHQKALE----------IHAHVIEYGHLHDIFIQNSLLHFYV--TVKDIFSA 64
           LK   L +P    LE          IHAH++      D+F  + L+ F +  T   +  A
Sbjct: 11  LKTLRLKNPKLVLLECCSNARDLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYA 70

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKC-----GFHKEAIDMFCGIDVKPNANTLVSVLSACS 119
            ++ + +  P++  +  +I G S        FH     +  G+   P+  T   ++ AC+
Sbjct: 71  IRVASQIQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFGL--LPDNITHPFLVKACA 128

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI------------------------- 154
            L +  +G   H  ++++  E +  + N+++  Y                          
Sbjct: 129 QLENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTC 188

Query: 155 ------RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
                 RCG   S   LF +MP+RN+V+W+TMI GYA     ++AV  F+ ++  +    
Sbjct: 189 MIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQ-AEGVVA 247

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           NE  +V V+S+C+ + AL+ G+  H Y+  R  LS++ ++G AV++MY +CG+V  A+ V
Sbjct: 248 NETVMVGVISSCAHLGALAMGEKAHEYV-MRNKLSLNLILGTAVVDMYARCGNVEKAVMV 306

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F  L  KD + W+ +I+GLAM+G   +AL  FS M      P D+TF A+++ACSH G+V
Sbjct: 307 FEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMV 366

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
           ++GL +F++M   + + P+++HY C+VD+ GRAG L +AE F+ +MP++    +W ALL 
Sbjct: 367 ERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLG 426

Query: 389 ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
           ACRIH+N E+ +R+ + L+  +    G + L+SN +A A++W+D   +R  ++  G++K 
Sbjct: 427 ACRIHKNVEVGERVGKILLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKP 486

Query: 449 TGCSWIEVNPSI 460
            G S IE++  +
Sbjct: 487 PGYSLIEIDGKV 498


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  271 bits (692), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 152/458 (33%), Positives = 260/458 (56%), Gaps = 16/458 (3%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHL-HD----IFIQNSLLHFYVTVKDIFSAHQ 66
           + T+ +K C           IH HV  +G L HD    +F+ NSL   Y     +  A +
Sbjct: 66  SLTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDDALR 125

Query: 67  IFNSVVFPDVVSWTTIISGLSKC-GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLV 122
           +F+ +   +VV+WTT+++ L+   G  +EA+     +    V PNA T  SVL AC++  
Sbjct: 126 MFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACTT-- 183

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
              +  A+HA +++   ++++ + ++++D Y++ G L     +F +M  R++V W ++I 
Sbjct: 184 -PGMLTAVHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWNSIIA 242

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
           G+A+ G    A+ +F  M K      N+ TL +VL AC+ +  L  G+ VH+++  +YD 
Sbjct: 243 GFAQSGDGVGAIELFMRM-KDAGFSSNQGTLTSVLRACTGMVMLEAGRQVHAHV-LKYDR 300

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
            +  ++ NA+++MY KCG +  A  +F+ +  +D ISWST++SGLA NG   +AL++F L
Sbjct: 301 DL--ILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNGKSVEALRVFDL 358

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
           M    V P+ VT + ++ ACSH GLV+ G   F++M  ++ I P+ +H+ C+VD+ GRAG
Sbjct: 359 MKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQPEREHHNCMVDLLGRAG 418

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSN 422
            L+EA  FI  M +E +  +W  LL ACR+H+N  +     ++++  +    G   L+SN
Sbjct: 419 KLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASLAAYAAREILKLEPDDQGARVLLSN 478

Query: 423 TFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           T+A   +W D  K    +R  G++K+ G SWIE+   +
Sbjct: 479 TYADLRQWTDAEKPWKAMRDRGMRKEPGRSWIELEKRV 516



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 64/116 (55%), Gaps = 5/116 (4%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S N  T T  L+AC+     +   ++HAHV++Y    D+ + N+LL  Y     +  A  
Sbjct: 266 SSNQGTLTSVLRACTGMVMLEAGRQVHAHVLKYD--RDLILHNALLDMYCKCGSLEDADA 323

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAI---DMFCGIDVKPNANTLVSVLSACS 119
           +F+ +   DV+SW+T++SGL++ G   EA+   D+     V PN  T+V VL ACS
Sbjct: 324 LFHRMPQRDVISWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACS 379


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  271 bits (692), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 153/468 (32%), Positives = 253/468 (54%), Gaps = 45/468 (9%)

Query: 30  LEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
           L+IHA ++  G  H   +   L   Y ++  +  +  +F+    P+V  WT II+  +  
Sbjct: 40  LQIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHF 99

Query: 90  GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
                A+  +  +    ++PNA TL S+L AC+        +A+H+H+++    +++ + 
Sbjct: 100 DLFHHALSYYSQMLTHPIQPNAFTLSSLLKACTL----HPARAVHSHAIKFGLSSHLYVS 155

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEM------ 200
             ++D Y R G +AS   LF  MP+R++VS+T M+  YA+ G   EA  +F+ M      
Sbjct: 156 TGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVV 215

Query: 201 -------------------------------EKTKEAEPNEATLVNVLSACSSISALSFG 229
                                              +  PNE T+V VLS+C  + AL  G
Sbjct: 216 CWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECG 275

Query: 230 KYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAM 289
           K+VHSY+     + V+  VG A+++MY KCG +  A +VF+++  KD ++W+++I G  +
Sbjct: 276 KWVHSYVENN-GIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGI 334

Query: 290 NGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQ 349
           +G   +ALQLF  M    V P D+TF+A+++AC+H GLV +G  +F +M   Y + P+++
Sbjct: 335 HGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVE 394

Query: 350 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNK 409
           HY C+V++ GRAG ++EA   +R M +E +  +WG LL ACRIH N  + + I + LV+ 
Sbjct: 395 HYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEILVSN 454

Query: 410 KGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
              S GT+ L+SN +A A  W    K+R  ++  G++K+ GCS IEV 
Sbjct: 455 GLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVK 502



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 153/326 (46%), Gaps = 47/326 (14%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML+ P   N +T +  LKAC+L HP   A  +H+H I++G    +++   L+  Y    D
Sbjct: 112 MLTHPIQPNAFTLSSLLKACTL-HP---ARAVHSHAIKFGLSSHLYVSTGLVDAYARGGD 167

Query: 61  IFSAHQIFNSV-------------------VFP------------DVVSWTTIISGLSKC 89
           + SA ++F+++                   + P            DVV W  +I G ++ 
Sbjct: 168 VASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQH 227

Query: 90  GFHKEAIDMF----------CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLN 139
           G   EA+  F              V+PN  T+V+VLS+C  + + + GK +H++   N  
Sbjct: 228 GCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGI 287

Query: 140 ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQE 199
           + N+ +  A++D Y +CGSL     +F  M  ++VV+W +MI GY   GF  EA+ +F E
Sbjct: 288 KVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHE 347

Query: 200 MEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKC 259
           M      +P++ T V VL+AC+    +S G  V   +   Y +         ++N+  + 
Sbjct: 348 M-CCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRA 406

Query: 260 GDVGIAIQ-VFNMLAYKDKISWSTVI 284
           G +  A   V +M    D + W T++
Sbjct: 407 GRMQEAYDLVRSMEVEPDPVLWGTLL 432


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  271 bits (692), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 147/435 (33%), Positives = 250/435 (57%), Gaps = 15/435 (3%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           EIH ++I +  + D+F++++L+  Y   +D+  A +I       D V  TT+ISG    G
Sbjct: 281 EIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNG 340

Query: 91  FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
            +KEA++ F  +    +KP + T  S+  A + L +  LGK +H   ++   +    + +
Sbjct: 341 KNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGS 400

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEM--EKTKE 205
           AILD Y +CG L     +F ++ +++ + W +MI   ++ G   EA+++F++M  E T+ 
Sbjct: 401 AILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRY 460

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYI---STRYDLSVSNLVGNAVINMYVKCGDV 262
              +  ++   LSAC+++ AL +GK +H  +     R DL   +    ++I+MY KCG++
Sbjct: 461 ---DCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAES----SLIDMYAKCGNL 513

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
             + +VF+ +  ++++SW+++IS    +G  ++ L LF  M+ N + PD VTF+ +ISAC
Sbjct: 514 NFSRRVFDRMQERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISAC 573

Query: 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
            H G VD+G+  +  M+  Y I  +M+HYACV DM+GRAG L+EA   I  MP   +  V
Sbjct: 574 GHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLDEAFETINSMPFPPDAGV 633

Query: 383 WGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442
           WG LL AC IH N E+ +   + L +   ++ G + L++N  AGA +W    K+R  ++ 
Sbjct: 634 WGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKE 693

Query: 443 MGLKKKTGCSWIEVN 457
            G++K  G SWIEVN
Sbjct: 694 RGVRKVPGYSWIEVN 708



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 192/390 (49%), Gaps = 19/390 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  TF   L  C+         ++H   +  G   D  + N+LL  Y   + + +A ++F
Sbjct: 158 NSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLF 217

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           ++    D+VSW  IISG  + G   EA  +F G+    +KP++ T  S L   + L+S K
Sbjct: 218 DTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLK 277

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
             K IH + +R+    ++ L +A++D Y +C  +     +  +    + V  TTMI GY 
Sbjct: 278 HCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYV 337

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH-SYISTRYDLSV 244
             G  KEA+  F+ + + +  +P   T  ++  A + ++AL+ GK +H S I T+ D   
Sbjct: 338 LNGKNKEALEAFRWLVQER-MKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKC 396

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
              VG+A+++MY KCG + +A +VFN +  KD I W+++I+  + NG   +A+ LF  M 
Sbjct: 397 H--VGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMG 454

Query: 305 INAVFPDDVTFIALISACS-----HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
           +     D V+    +SAC+     H G    GL++   + +       +   + ++DMY 
Sbjct: 455 MEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRS------DLYAESSLIDMYA 508

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           + G L  +      M    E S W ++++A
Sbjct: 509 KCGNLNFSRRVFDRMQERNEVS-WNSIISA 537



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 197/408 (48%), Gaps = 8/408 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    S + YTF   +KAC      +    +H  V   G   D+F+ +SL+  Y     
Sbjct: 49  MLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGH 108

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           +  A  +F+++   D V W  +++G  K G    AI +F  +   ++KPN+ T   VLS 
Sbjct: 109 LSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSV 168

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C+S     LG  +H  ++    E +  + N +L  Y +C  L +   LF   P+ ++VSW
Sbjct: 169 CASEAMLDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSW 228

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
             +I GY + G   EA  +F+ M  +   +P+  T  + L   + + +L   K +H YI 
Sbjct: 229 NGIISGYVQNGLMGEAEHLFRGM-ISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYI- 286

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            R+ + +   + +A+I++Y KC DV +A ++    +  D +  +T+ISG  +NG  ++AL
Sbjct: 287 IRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEAL 346

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
           + F  ++   + P  VTF ++  A +    ++ G  L  ++    ++  +    + ++DM
Sbjct: 347 EAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKT-KLDEKCHVGSAILDM 405

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDRIRQ 404
           Y + G L+ A      +  E +   W +++ +C  + R  E  +  RQ
Sbjct: 406 YAKCGRLDLACRVFNRI-TEKDAICWNSMITSCSQNGRPGEAINLFRQ 452



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 133/270 (49%), Gaps = 7/270 (2%)

Query: 54  FYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANT 110
            YV    +  A  +F ++      +W  +I G +  G    A+  +    G  V P+  T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 111 LVSVLSACSSLVSHKLGKAIHAH-SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKM 169
              V+ AC  L S K+GK +H   +L  L E+ + + ++++  Y   G L+   YLF  +
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKED-VFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 170 PKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 229
           P+++ V W  M+ GY + G    A+ +F EM  + E +PN  T   VLS C+S + L  G
Sbjct: 120 PQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHS-EIKPNSVTFACVLSVCASEAMLDLG 178

Query: 230 KYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAM 289
             +H  I+    L + + V N ++ MY KC  +  A ++F+     D +SW+ +ISG   
Sbjct: 179 TQLHG-IAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQ 237

Query: 290 NGCGRQALQLFSLMIINAVFPDDVTFIALI 319
           NG   +A  LF  MI   + PD +TF + +
Sbjct: 238 NGLMGEAEHLFRGMISAGIKPDSITFASFL 267



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 110/253 (43%), Gaps = 32/253 (12%)

Query: 152 FYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEA 211
            Y+R GSL     LF  +      +W  MI G+   G    A+  + +M       P++ 
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAG-VSPDKY 59

Query: 212 TLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 271
           T   V+ AC  + ++  GK VH  ++    L     VG+++I +Y + G +  A  +F+ 
Sbjct: 60  TFPYVVKACCGLKSVKMGKIVHETVNL-MGLKEDVFVGSSLIKLYAENGHLSDAQYLFDN 118

Query: 272 LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
           +  KD + W+ +++G   NG    A+++F  M  + + P+ VTF  ++S C+   ++D G
Sbjct: 119 IPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLG 178

Query: 332 LIL----------------------------FKAMSTVYEIVPQ--MQHYACVVDMYGRA 361
             L                             +A   +++  PQ  +  +  ++  Y + 
Sbjct: 179 TQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQN 238

Query: 362 GLLEEAEAFIREM 374
           GL+ EAE   R M
Sbjct: 239 GLMGEAEHLFRGM 251



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 14/141 (9%)

Query: 255 MYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVT 314
           MYV+ G +  A  +F  L      +W+ +I G  M G    AL  +  M+   V PD  T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY------ACVVDMYGRAGLLEEAE 368
           F  ++ AC        GL   K    V+E V  M         + ++ +Y   G L +A+
Sbjct: 61  FPYVVKACC-------GLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQ 113

Query: 369 AFIREMPIEAEWSVWGALLNA 389
                +P + +  +W  +LN 
Sbjct: 114 YLFDNIP-QKDSVLWNVMLNG 133


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  271 bits (692), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 149/472 (31%), Positives = 263/472 (55%), Gaps = 27/472 (5%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           TF  AL ACS         E+HA+V++   L  + F+ ++L+  Y + + +  A ++F+ 
Sbjct: 273 TFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDM 332

Query: 71  VV--FPDVVSWTTIISGLSKCGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLVSH 124
           V      +  W  ++ G ++ G  +EA+++F  ++    V P+  T+  VL AC+   + 
Sbjct: 333 VPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETF 392

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
              +A+H + L+    +N  + NA++D Y R G + +  ++F  +  R+VVSW T+I G 
Sbjct: 393 AGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGC 452

Query: 185 AERGFCKEAVSVFQEMEK---------------TKEAE--PNEATLVNVLSACSSISALS 227
             +G   +A  + +EM++               T E    PN  TL+ +L  C+ ++A +
Sbjct: 453 VVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPA 512

Query: 228 FGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGL 287
            GK +H Y + R+ L     VG+A+++MY KCG + ++  VF+ L  ++ I+W+ +I   
Sbjct: 513 KGKEIHGY-AMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMAY 571

Query: 288 AMNGCGRQALQLFSLMII-NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 346
            M+G G +A+ LF  M++ N   P++VTFIA ++ACSH G+VD+G+ LF +M   + + P
Sbjct: 572 GMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQP 631

Query: 347 QMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDEMFDRIRQD 405
               +AC VD+ GRAG L+EA + I  M P E + S W + L ACR+HRN  + +   + 
Sbjct: 632 TPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVPLGEIAAER 691

Query: 406 LVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           L   +      + L+ N ++ A  WE ++++R+ +R+ G+ K+ GCSWIE++
Sbjct: 692 LFQLEPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIELD 743



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 195/409 (47%), Gaps = 35/409 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIF--IQNSLLHFYVTVKDIFSAHQ 66
           +H+    A K+ +          IH   +    LH     + N+LL  Y    D+ +A  
Sbjct: 58  DHFALPPAAKSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALA 117

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHK--EAIDMFCG--IDVKP-NANTLVSVLSACSSL 121
           +FN++   D V++ ++I+ L  C F +   A+D      ++  P ++ TLVSVL ACS L
Sbjct: 118 LFNAMPSRDAVTFNSLIAAL--CLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHL 175

Query: 122 VSH-KLGKAIHAHSLRN--LNENNIILDNAILDFYIRCGSLASCGYLF-----VKMPKRN 173
               +LG+  HA +L+N  L+ +     NA+L  Y R G +     LF        P   
Sbjct: 176 AEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGG 235

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
           VV+W TM+    + G C EA+ V  +M   +   P+  T  + L ACS +  LS G+ +H
Sbjct: 236 VVTWNTMVSLLVQSGRCGEAIEVIYDM-VARGVRPDGITFASALPACSQLEMLSLGREMH 294

Query: 234 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML--AYKDKISWSTVISGLAMNG 291
           +Y+    DL+ ++ V +A+++MY     VG+A +VF+M+   ++    W+ ++ G A  G
Sbjct: 295 AYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAG 354

Query: 292 CGRQALQLFSLMIINA-VFPDDVTFIALISACSH-----GGLVDQGLILFKAMSTVYEIV 345
              +AL+LF+ M   A V P + T   ++ AC+      G     G +L + M+      
Sbjct: 355 MDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMAD----N 410

Query: 346 PQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV-WGALLNACRIH 393
           P +Q+   ++D+Y R G +E A        IE    V W  L+  C + 
Sbjct: 411 PFVQN--ALMDLYARLGDMEAARWIF--AAIEPRDVVSWNTLITGCVVQ 455



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 100/229 (43%), Gaps = 20/229 (8%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           P   N+ T    L  C++     K  EIH + + +    DI + ++L+  Y     +  +
Sbjct: 490 PVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALS 549

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACS- 119
             +F+ +   +V++W  +I      G   EAI +F  +    + KPN  T ++ L+ACS 
Sbjct: 550 RAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSH 609

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP--KRNVVSW 177
           S +  +  +  H+    +  +    L    +D   R G L     +   M   ++ V +W
Sbjct: 610 SGMVDRGMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAW 669

Query: 178 TTMIGGYAERGFCKEAVSV-FQEM--EKTKEAEPNEAT----LVNVLSA 219
           ++ +G       C+   +V   E+  E+  + EP+EA+    L N+ SA
Sbjct: 670 SSFLGA------CRLHRNVPLGEIAAERLFQLEPDEASHYVLLCNIYSA 712


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  271 bits (692), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 147/457 (32%), Positives = 262/457 (57%), Gaps = 9/457 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +T+   L+ C+     +   +IH+  I+ G   D+++   L+  Y   + +  A +I 
Sbjct: 345 NKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKIL 404

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLVS 123
             +   DVVSWT++I+G  +  F +EA+  F     CG  V P+   L S  SAC+ + +
Sbjct: 405 EMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCG--VWPDNIGLASAASACAGIKA 462

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            + G  IHA    +    +I + N +++ Y RCG       LF ++  ++ ++W  +I G
Sbjct: 463 MRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISG 522

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           + +    ++A+ VF +M +   A+ N  T ++ +SA ++++ +  GK VH   + +   +
Sbjct: 523 FGQSRLYEQALMVFMKMSQAG-AKYNVFTFISAISALANLADIKQGKQVHGR-AVKTGHT 580

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
               V NA+I++Y KCG +  A  +F+ ++ ++++SW+T+I+  + +G G +AL LF  M
Sbjct: 581 SETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQM 640

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
               + P+DVTFI +++ACSH GLV++GL  FK+MS VY + P   HYACVVD+ GRAG 
Sbjct: 641 KQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQ 700

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           L+ A  F+ EMPI A   +W  LL+AC++H+N E+ +   + L+  +     ++ L+SN 
Sbjct: 701 LDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNA 760

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +A   +W + +++R  ++  G++K+ G SWIEV  ++
Sbjct: 761 YAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAV 797



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 119/422 (28%), Positives = 218/422 (51%), Gaps = 18/422 (4%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L AC+     QK  ++H+++++ G   D   + SLL  YV   DI +AH IFN  
Sbjct: 247 TVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLG 306

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
              +VV W  ++    +     ++ ++F  +    + PN  T   +L  C+     +LG+
Sbjct: 307 DRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGE 366

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IH+ S++N  E+++ +   ++D Y +   L     +   + KR+VVSWT+MI GY +  
Sbjct: 367 QIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHD 426

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS--YISTRYDLSVSN 246
           FC+EA++ F+EM+      P+   L +  SAC+ I A+  G  +H+  Y+S  Y   +S 
Sbjct: 427 FCEEALATFKEMQDCG-VWPDNIGLASAASACAGIKAMRQGLQIHARVYVSG-YAADIS- 483

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            + N ++N+Y +CG    A  +F  + +KD+I+W+ +ISG   +    QAL +F  M   
Sbjct: 484 -IWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQA 542

Query: 307 AVFPDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
               +  TFI+ ISA ++   + QG  +  +A+ T +    ++ +   ++ +YG+ G +E
Sbjct: 543 GAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVAN--ALISLYGKCGSIE 600

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQDLVNKKGVS-VGTFALM 420
           +A+    EM +  E S W  ++ +C  H       ++FD+++Q+ +    V+ +G  A  
Sbjct: 601 DAKMIFSEMSLRNEVS-WNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAAC 659

Query: 421 SN 422
           S+
Sbjct: 660 SH 661



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 192/382 (50%), Gaps = 7/382 (1%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           Y  +  L AC+      +   IHA V +     + F+ N+L+  Y+       A ++F  
Sbjct: 145 YVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCD 204

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHKLG 127
           ++F D V++ T+ISG ++CG  + A+ +F  + +   +P+  T+ S+L+AC+S+   + G
Sbjct: 205 MLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKG 264

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           K +H++ L+     + I + ++LD Y++CG + +   +F    + NVV W  M+  Y + 
Sbjct: 265 KQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQI 324

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
               ++  +F +M+ T    PN+ T   +L  C+    +  G+ +HS +S +        
Sbjct: 325 SDLAKSFEIFGQMQATG-IHPNKFTYPCILRTCTCTGQIELGEQIHS-LSIKNGFESDMY 382

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V   +I+MY K   +  A ++  ML  +D +SW+++I+G   +    +AL  F  M    
Sbjct: 383 VSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCG 442

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           V+PD++   +  SAC+    + QGL +  A   V      +  +  +V++Y R G  EEA
Sbjct: 443 VWPDNIGLASAASACAGIKAMRQGLQI-HARVYVSGYAADISIWNTLVNLYARCGRSEEA 501

Query: 368 EAFIREMPIEAEWSVWGALLNA 389
            +  RE+  + E + W  L++ 
Sbjct: 502 FSLFREIDHKDEIT-WNGLISG 522



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 185/379 (48%), Gaps = 8/379 (2%)

Query: 13  FTQALKAC-SLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
            T AL+AC    +     LEIHA  +  G   D  I N L+  Y     ++ A Q+F  +
Sbjct: 45  LTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKEL 104

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
              D VSW  ++SG ++ G  KEA  ++  +    V P    L SVLSAC+       G+
Sbjct: 105 SSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGR 164

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IHA   +    +   + NA++  Y+  GS      +F  M   + V++ T+I G+A+ G
Sbjct: 165 MIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCG 224

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
             + A+ +F EM+ +    P+  T+ ++L+AC+S+  L  GK +HSY+  +  +S   + 
Sbjct: 225 HGECALQIFDEMQLSG-LRPDCVTVASLLAACASVGDLQKGKQLHSYL-LKAGMSFDYIT 282

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
             +++++YVKCGD+  A  +FN+    + + W+ ++          ++ ++F  M    +
Sbjct: 283 EGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGI 342

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            P+  T+  ++  C+  G ++ G  +  ++S        M     ++DMY +   L++A 
Sbjct: 343 HPNKFTYPCILRTCTCTGQIELGEQI-HSLSIKNGFESDMYVSGVLIDMYSKYRCLDKAR 401

Query: 369 AFIREMPIEAEWSVWGALL 387
             I EM  + +   W +++
Sbjct: 402 K-ILEMLEKRDVVSWTSMI 419



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 142/289 (49%), Gaps = 5/289 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M  C    ++     A  AC+     ++ L+IHA V   G+  DI I N+L++ Y     
Sbjct: 438 MQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGR 497

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
              A  +F  +   D ++W  +ISG  +   +++A+ +F  +     K N  T +S +SA
Sbjct: 498 SEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISA 557

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
            ++L   K GK +H  +++  + +   + NA++  Y +CGS+     +F +M  RN VSW
Sbjct: 558 LANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSW 617

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
            T+I   ++ G   EA+ +F +M K +  +PN+ T + VL+ACS +  +  G      +S
Sbjct: 618 NTIITSCSQHGRGLEALDLFDQM-KQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMS 676

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDKISWSTVIS 285
             Y L+        V+++  + G +  A + V  M    + + W T++S
Sbjct: 677 NVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLS 725


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  271 bits (692), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 150/449 (33%), Positives = 248/449 (55%), Gaps = 8/449 (1%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           +   L++C      +   ++HA V   G   D  I   L++ Y     + SA  +F+ + 
Sbjct: 78  YASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIP 137

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKA 129
             ++  W  +I G +  G ++ A+ ++  +    + P+  T   VL AC++L + + G+ 
Sbjct: 138 KHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGRE 197

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           IH H ++   E ++ +  A++D Y +CG + S   +F K+  R+ V W +M+  Y++ G 
Sbjct: 198 IHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGH 257

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
               +S+  EM  T    P EATLV  +SA +  +AL  G+ +H  +S R +    + V 
Sbjct: 258 PDACLSLCSEMVLTG-LRPTEATLVTAISASADNAALPQGRELHG-LSWRQEFESHDKVK 315

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
            A+++MY KCG V +A  +F  L  K  +SW+ +I+G AM+G   +AL LF  M  N V 
Sbjct: 316 TALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEM--NRVA 373

Query: 310 -PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD +TF+ ++SACSHGGL+++G + F+ M   Y+I P +QHY C+VD+ G +G L+EA 
Sbjct: 374 KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAY 433

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
             I +M +  +  VWGALLN+C+IH N E+ +   + L+  +    G + ++SN +A A 
Sbjct: 434 NLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQAG 493

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +WE   K+R  +    LKK   CSWIEV 
Sbjct: 494 KWEGVAKLRKLMTDRRLKKSIACSWIEVK 522


>gi|212723118|ref|NP_001131685.1| hypothetical protein [Zea mays]
 gi|194692242|gb|ACF80205.1| unknown [Zea mays]
 gi|414879040|tpg|DAA56171.1| TPA: hypothetical protein ZEAMMB73_730680 [Zea mays]
          Length = 590

 Score =  271 bits (692), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 158/468 (33%), Positives = 253/468 (54%), Gaps = 19/468 (4%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M  C    + YTF   LKAC  A   +  L +HA  +  G   D+F  N+L+ FY  + D
Sbjct: 104 MRRCGVRPDAYTFPAVLKACGCAPGCRAGLLVHAEAVRRGLAADLFTVNALISFYCRILD 163

Query: 61  IFSAHQIFNSV--VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSAC 118
           I S  ++F+    V  D+VSW ++++G   CG    A +MF   D  P  +T      + 
Sbjct: 164 IRSGRKVFDEAGGVSRDLVSWNSMVAGYVGCGEMGLAQEMF---DEMPQKDTF-----SW 215

Query: 119 SSLVSHKLGKAIHAHSLR------NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKR 172
           ++L+    GK   A   R       + E +++  N+++D Y R G +     LF +MP+R
Sbjct: 216 ATLID-GYGKQGGAGVDRARELFDQMPERDLVCWNSMIDGYARHGRMDEARSLFEEMPER 274

Query: 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYV 232
           NV+SW+ +I G+   G  KEA+  FQ M +     P+    V  +SAC+ + AL  G+++
Sbjct: 275 NVISWSIVIDGHVSCGEAKEALEYFQSMLRCG-LRPDRIAAVGAVSACAQLGALEQGRWL 333

Query: 233 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
           HSY+  +  LS   +V  A+I+MYVKCG + +A+ +F  +A +  ++W+ +I GL  +G 
Sbjct: 334 HSYLEKKKLLS-DVVVQTALIDMYVKCGCLDLAMLIFESMAERSVVTWNVMIVGLGTHGF 392

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
           G  A+ LF  M   +V  DD++ + +++AC+H GLV +GL +F  M   + I P+++HY 
Sbjct: 393 GLDAVTLFHRMEAESVAVDDLSVLGMLTACTHAGLVSEGLEIFHRMKKDFGIDPKVEHYG 452

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
            +VD+ GRAG L++A   I  MP+E    +WG+LL ACR H   E+ +   + L +    
Sbjct: 453 ALVDLLGRAGRLDQARHAIETMPMEPTPELWGSLLAACRSHSCVELAELSVERLADLGAD 512

Query: 413 SVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
             G + L+SN +A    W D  +IR  +   G++K  G S IEV+  I
Sbjct: 513 DSGVYVLLSNIYADEGMWGDVLRIRKLMSDEGMRKDIGRSVIEVDGEI 560


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  271 bits (692), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 152/435 (34%), Positives = 240/435 (55%), Gaps = 10/435 (2%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           EIHA+ I+ G   +I + N+L+  Y     +    + F+ +   D++SWTT  +G ++  
Sbjct: 282 EIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNK 341

Query: 91  FHKEAIDMFC-----GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
            + +A+++       G+DV  +A  + S+L AC  L      K IH +++R    ++ +L
Sbjct: 342 CYLQALELLRQLQMEGMDV--DATMIGSILLACRGLNCLGKIKEIHGYTIRG-GLSDPVL 398

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            N I+D Y  CG +     +F  +  ++VVSWT+MI  Y   G   +A+ VF  M++T  
Sbjct: 399 QNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETG- 457

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
            EP+  TLV++LSA  S+S L  GK +H +I  R    +   + N +++MY +CG V  A
Sbjct: 458 LEPDYVTLVSILSAVCSLSTLKKGKEIHGFI-IRKGFILEGSISNTLVDMYARCGSVEDA 516

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
            ++F     ++ I W+ +IS   M+G G  A++LF  M    + PD +TF+AL+ ACSH 
Sbjct: 517 YKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHS 576

Query: 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 385
           GLV++G    + M   Y++ P  +HY C+VD+ GR   LEEA   ++ M  E    VW A
Sbjct: 577 GLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCA 636

Query: 386 LLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445
           LL ACRIH N E+ +   + L+     + G + L+SN FA   RW+D  ++R  ++  GL
Sbjct: 637 LLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGL 696

Query: 446 KKKTGCSWIEVNPSI 460
            K  GCSWIEV   I
Sbjct: 697 TKNPGCSWIEVGNKI 711



 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 122/426 (28%), Positives = 232/426 (54%), Gaps = 36/426 (8%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML      N YTF  AL+AC  +   +  ++IHA +++ G + D+++ N+L+  YV    
Sbjct: 151 MLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGK 210

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           +  A  IF ++   D+V+W ++++G  + G + EA++ F  +   D+KP+  +++S++ A
Sbjct: 211 MPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVA 270

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
              L     GK IHA++++N  ++NI++ N ++D Y +C  ++  G  F  M  ++++SW
Sbjct: 271 SGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISW 330

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV-NVLSACSSISALSFGKYVHSYI 236
           TT   GYA+     +A+ + ++++   E    +AT++ ++L AC  ++ L   K +H Y 
Sbjct: 331 TTAAAGYAQNKCYLQALELLRQLQ--MEGMDVDATMIGSILLACRGLNCLGKIKEIHGY- 387

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
           + R  LS   ++ N +I++Y +CG +  A+++F  +  KD +SW+++IS    NG   +A
Sbjct: 388 TIRGGLS-DPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKA 446

Query: 297 LQLFSLMIINAVFPDDVTFIALISA-CS----------HGGLVDQGLILFKAMSTVYEIV 345
           L++FS M    + PD VT ++++SA CS          HG ++ +G IL  ++S      
Sbjct: 447 LEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNT---- 502

Query: 346 PQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDR 401
                   +VDMY R G +E+A   I          +W A+++A  +H       E+F R
Sbjct: 503 --------LVDMYARCGSVEDAYK-IFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMR 553

Query: 402 IRQDLV 407
           ++ + +
Sbjct: 554 MKDEKI 559



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 110/373 (29%), Positives = 194/373 (52%), Gaps = 24/373 (6%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S++ YTF   LKAC +        EIH   I+YG    +F+ NSL+  Y    DI  A +
Sbjct: 55  SFDSYTFPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARK 114

Query: 67  IFNSV-VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLV 122
           +F+ + V  DVVSW +IIS  S  G   EA+ +F  +    V  N  T  + L AC    
Sbjct: 115 LFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSS 174

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
             KLG  IHA  L++    ++ + NA++  Y+R G +     +F  +  +++V+W +M+ 
Sbjct: 175 FIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLT 234

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYD 241
           G+ + G   EA+  F +++   + +P++ ++++++ A   +  L  GK +H+Y I   +D
Sbjct: 235 GFIQNGLYSEALEFFYDLQNA-DLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFD 293

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
            ++  LVGN +I+MY KC  +    + F+++A+KD ISW+T  +G A N C  QAL+L  
Sbjct: 294 SNI--LVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLR 351

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV-------PQMQHYACV 354
            + +  +  D     +++ AC       +GL     +  ++          P +Q+   +
Sbjct: 352 QLQMEGMDVDATMIGSILLAC-------RGLNCLGKIKEIHGYTIRGGLSDPVLQN--TI 402

Query: 355 VDMYGRAGLLEEA 367
           +D+YG  G+++ A
Sbjct: 403 IDVYGECGIIDYA 415



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 133/281 (47%), Gaps = 6/281 (2%)

Query: 55  YVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTL 111
           Y     +  A  IF+ +    + +W  ++ G    G    A++M+     + V  ++ T 
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61

Query: 112 VSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK 171
             +L AC  +     G  IH  +++   ++ + + N+++  Y +C  +     LF +M  
Sbjct: 62  PVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYV 121

Query: 172 RN-VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGK 230
           RN VVSW ++I  Y+  G C EA+ +F EM K      N  T    L AC   S +  G 
Sbjct: 122 RNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAG-VVTNTYTFAAALQACEDSSFIKLGM 180

Query: 231 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMN 290
            +H+ I  +    +   V NA++ MYV+ G +  A  +F  L  KD ++W+++++G   N
Sbjct: 181 QIHAAI-LKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQN 239

Query: 291 GCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
           G   +AL+ F  +    + PD V+ I++I A    G +  G
Sbjct: 240 GLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNG 280



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 107/216 (49%), Gaps = 4/216 (1%)

Query: 153 YIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEAT 212
           Y +CGS+     +F KM +R++ +W  M+GGY   G    A+ +++EM        +  T
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLG-VSFDSYT 60

Query: 213 LVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN-M 271
              +L AC  +  L  G  +H  ++ +Y       V N+++ +Y KC D+  A ++F+ M
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHG-LAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRM 119

Query: 272 LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
               D +SW+++IS  + NG   +AL LFS M+   V  +  TF A + AC     +  G
Sbjct: 120 YVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLG 179

Query: 332 LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           + +  A+     ++      A +V MY R G + EA
Sbjct: 180 MQIHAAILKSGRVLDVYVANA-LVAMYVRFGKMPEA 214



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 35/69 (50%)

Query: 255 MYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVT 314
           MY KCG V  A  +F+ ++ +   +W+ ++ G   NG    AL+++  M    V  D  T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 315 FIALISACS 323
           F  L+ AC 
Sbjct: 61  FPVLLKACG 69


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  271 bits (692), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 148/453 (32%), Positives = 256/453 (56%), Gaps = 12/453 (2%)

Query: 12  TFTQALKACSLAHPH-QKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           T+++ +K C LAH   ++   +H H+   G+    F+ N L++ YV    +  A  +F+ 
Sbjct: 287 TYSELIKCC-LAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEAQVLFDK 345

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLG 127
           +   +VVSWTT+IS  S    +  A+ +   +    V PN  T  SVL AC  L   K  
Sbjct: 346 MPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERLYDLK-- 403

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
             +H+  ++   E+++ + +A++D Y + G L     +F +M   + V W ++I  +A+ 
Sbjct: 404 -QLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQH 462

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
               EA+ +++ M +      +++TL +VL AC+S+S L  G+  H ++  ++D  +  +
Sbjct: 463 SDGDEALHLYKSMRRVG-FPADQSTLTSVLRACTSLSLLELGRQAHVHV-LKFDQDL--I 518

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           + NA+++MY KCG +  A  +FN +A KD ISWST+I+GLA NG   +AL LF  M +  
Sbjct: 519 LNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQG 578

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
             P+ +T + ++ ACSH GLV++G   F++M+ +Y I P  +HY C++D+ GRA  L++ 
Sbjct: 579 PKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKLDDM 638

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
              I EM  E +   W  LL+ACR  +N ++     ++++       G + L+SN +A +
Sbjct: 639 VKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQDTGAYVLLSNIYAIS 698

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            RW D  ++R  +++ G++K+ GCSWIEVN  I
Sbjct: 699 KRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQI 731


>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
          Length = 752

 Score =  271 bits (692), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 151/415 (36%), Positives = 230/415 (55%), Gaps = 10/415 (2%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID 103
           D+   NS+L  Y    ++    Q F  +   DVVSW  ++ G  + G    + + F  I 
Sbjct: 57  DLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKI- 115

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSL-RNLNENNIILDNAILDFYIRCGSLASC 162
             PN NT+  V   C      + GK   A  L   +   N++  NA++  Y++   +   
Sbjct: 116 --PNPNTVSWVTMLCGF---ARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEA 170

Query: 163 GYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS 222
             LF++MP++N +SWTT+I GY   G   EA  +  +M    +  P+++T    LS+C+ 
Sbjct: 171 ISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNK--PDQSTFACGLSSCAH 228

Query: 223 ISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWST 282
           ++AL  GK +H  +  +   +    V NA+I MY KCG +  A  +F  + + D +SW++
Sbjct: 229 LAALQVGKQLHQLV-MKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNS 287

Query: 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 342
           +I+  A+NG GR+AL+LF  M +  V PD+VTF+ ++SACSH GL+DQGL LFK M   Y
Sbjct: 288 LIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAY 347

Query: 343 EIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRI 402
            I P  +HYAC+VD+ GRAG LEEA   +R M I A   +WGALL ACRIH N E+    
Sbjct: 348 NIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFA 407

Query: 403 RQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            + L+  +      + L+SN  A A RW++  ++R  ++  G +K+ G SWIE+ 
Sbjct: 408 AEKLLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQ 462



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 155/337 (45%), Gaps = 43/337 (12%)

Query: 42  LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG 101
           + ++   N+++  YV    +  A  +F  +   + +SWTT+I+G  + G   EA  +   
Sbjct: 148 IRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQ 207

Query: 102 IDV--KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSL 159
           +    KP+ +T    LS+C+ L + ++GK +H   +++    ++ + NA++  Y +CGS+
Sbjct: 208 MPYRNKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSI 267

Query: 160 ASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
           +S   LF  +   +VVSW ++I  YA  G  +EA+ +F +ME  +   P+E T V +LSA
Sbjct: 268 SSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKME-VEGVAPDEVTFVGILSA 326

Query: 220 CSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS 279
           CS +  +  G  +                         KC      +Q +N+    +   
Sbjct: 327 CSHVGLIDQGLKL------------------------FKC-----MVQAYNIEPLAEH-- 355

Query: 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS-HGGLVDQGLILFKAM 338
           ++ ++  L   G   +A QL   M INA   +   + AL+ AC  HG L    L  F A 
Sbjct: 356 YACMVDLLGRAGRLEEAFQLVRGMKINA---NAGIWGALLGACRIHGNL---ELAKFAA- 408

Query: 339 STVYEIVP-QMQHYACVVDMYGRAGLLEEAEAFIREM 374
             + E  P +  +Y  + +M   AG  +E     R M
Sbjct: 409 EKLLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLM 445



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 117/278 (42%), Gaps = 39/278 (14%)

Query: 127 GKAIHAHSLRNL--NENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           G+   A +L NL   + N +  NA++  Y +         LF  MP +++VSW +M+ GY
Sbjct: 9   GELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGY 68

Query: 185 AERGFCKEAVSVFQEMEK--------------------------TKEAEPNEATLVNVLS 218
              G  +  +  F+EM +                           K   PN  + V +L 
Sbjct: 69  TRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLC 128

Query: 219 ACSSISALSFGKYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDK 277
             +    ++  + +   +  R      N+V  NA+I  YV+   V  AI +F  +  K+ 
Sbjct: 129 GFARFGKIAEARRLFDQMPIR------NVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNS 182

Query: 278 ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFK- 336
           ISW+TVI+G    G   +A QL + M      PD  TF   +S+C+H   +  G  L + 
Sbjct: 183 ISWTTVINGYVRMGKLDEARQLLNQMPYRNK-PDQSTFACGLSSCAHLAALQVGKQLHQL 241

Query: 337 AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
            M + Y     +     ++ MY + G +  AE   +++
Sbjct: 242 VMKSGYAT--DLFVSNALITMYAKCGSISSAELLFKDI 277



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 102/219 (46%), Gaps = 16/219 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +  TF   L +C+     Q   ++H  V++ G+  D+F+ N+L+  Y     I SA  +F
Sbjct: 215 DQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLF 274

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACS--SLVS 123
             +   DVVSW ++I+  +  G  +EA+ +F  ++V+   P+  T V +LSACS   L+ 
Sbjct: 275 KDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLID 334

Query: 124 H--KLGKA-IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTT 179
              KL K  + A+++  L E+   +    +D   R G L     L   M    N   W  
Sbjct: 335 QGLKLFKCMVQAYNIEPLAEHYACM----VDLLGRAGRLEEAFQLVRGMKINANAGIWGA 390

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLS 218
           ++G     G  + A       EK  E EP++ +   +LS
Sbjct: 391 LLGACRIHGNLELAKFA---AEKLLEFEPHKTSNYVLLS 426


>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Brachypodium distachyon]
          Length = 805

 Score =  271 bits (692), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 144/437 (32%), Positives = 247/437 (56%), Gaps = 7/437 (1%)

Query: 23  AHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTI 82
           A  + KALE+   + E G   +    +++L   +  +D+ SA  +F+ +  P V +W T+
Sbjct: 328 AGSYAKALEVLNLMEESGSEPNEVTYSNMLASCIKARDVLSARAMFDKISRPSVTTWNTL 387

Query: 83  ISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLN 139
           +SG  +   H++ +++F  +   +V+P+  TL  +LS+CS L    LG  +H+ S+R L 
Sbjct: 388 LSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQVHSASVRFLL 447

Query: 140 ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQE 199
            N++ + + ++D Y +CG +     +F +M +R+VV W +MI G A     +EA   F++
Sbjct: 448 HNDMFVASGLVDMYSKCGQIGIARIIFNRMTERDVVCWNSMISGLAIHSLNEEAFDFFKQ 507

Query: 200 MEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSVSNLVGNAVINMYVK 258
           M +     P E++  +++++C+ +S++  G+ +H+ I    YD +V   VG+A+I+MY K
Sbjct: 508 M-RGNGMMPTESSYASMINSCARLSSVPQGRQIHAQIVKDGYDQNV--YVGSALIDMYAK 564

Query: 259 CGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIAL 318
           CG++  A   F+ +  K+ ++W+ +I G A NG G +A+ LF  M+     PD VTFIA+
Sbjct: 565 CGNMDDARVFFDCMVTKNIVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQRPDGVTFIAV 624

Query: 319 ISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEA 378
           ++ CSH GLVD+ +  F +M + Y I P  +HY C++D  GRAG L E EA I  MP + 
Sbjct: 625 LTGCSHSGLVDEAIAFFNSMESTYGITPLAEHYTCLIDGLGRAGRLVEVEALIDNMPCKD 684

Query: 379 EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRD 438
           +  VW  LL AC +H N E+ +   + L      +   + L+SN +A   R  D + +R 
Sbjct: 685 DPIVWEVLLAACAVHHNAELGECAAKHLFRLDPKNPSPYVLLSNIYASLGRHGDASGVRA 744

Query: 439 EIRRMGLKKKTGCSWIE 455
            +   G+ K  G SWI+
Sbjct: 745 LMSSRGVVKGRGYSWID 761



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 111/450 (24%), Positives = 201/450 (44%), Gaps = 51/450 (11%)

Query: 10  HYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN 69
           H+T    L AC            H   ++ G   ++F++N+LL  Y     +  A ++F+
Sbjct: 140 HFTLASVLSACGAVAALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFD 199

Query: 70  SVVFPDVVSWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNA--NTLVSVLSACSS-- 120
            +  P+ VS+T ++ GL + G   +A+ +F      G+ V P A  + L S   AC+S  
Sbjct: 200 GMASPNEVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEF 259

Query: 121 --LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWT 178
             + + +LG+ IHA  +R    ++  + N+++D Y +C  +     +F  +P  + VSW 
Sbjct: 260 DVVRAFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWN 319

Query: 179 TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST 238
            +I G+ + G   +A+ V   ME++  +EPNE T  N+L++C                  
Sbjct: 320 ILITGFGQAGSYAKALEVLNLMEESG-SEPNEVTYSNMLASC------------------ 360

Query: 239 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQ 298
                             +K  DV  A  +F+ ++     +W+T++SG       +  ++
Sbjct: 361 ------------------IKARDVLSARAMFDKISRPSVTTWNTLLSGYCQEELHQDTVE 402

Query: 299 LFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMY 358
           LF  M    V PD  T   ++S+CS  G++D G  +  A S  + +   M   + +VDMY
Sbjct: 403 LFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQVHSA-SVRFLLHNDMFVASGLVDMY 461

Query: 359 GRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR-NDEMFDRIRQDLVNKKGVSVGTF 417
            + G +  A      M  E +   W ++++   IH  N+E FD  +Q   N    +  ++
Sbjct: 462 SKCGQIGIARIIFNRM-TERDVVCWNSMISGLAIHSLNEEAFDFFKQMRGNGMMPTESSY 520

Query: 418 ALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
           A M N+ A         +I  +I + G  +
Sbjct: 521 ASMINSCARLSSVPQGRQIHAQIVKDGYDQ 550



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 176/356 (49%), Gaps = 21/356 (5%)

Query: 49  NSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVK 105
           N+ L       D+ +A  + + +   +VVSW T+I+ L++     EA++++ G+    + 
Sbjct: 78  NAALSAARRAGDLDAARALLDEMPDRNVVSWNTVIAALARSERAGEALELYEGMLREGLV 137

Query: 106 PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYL 165
           P   TL SVLSAC ++ +   G+  H  +++   + N+ ++NA+L  Y +CG +     L
Sbjct: 138 PTHFTLASVLSACGAVAALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRL 197

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS--- 222
           F  M   N VS+T M+GG  + G   +A+ +F  M ++     +   + +VL +C+    
Sbjct: 198 FDGMASPNEVSFTAMMGGLVQAGSVDDALRLFARMCRSG-VRVDPVAVSSVLGSCAQACA 256

Query: 223 -----ISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK 277
                + A   G+ +H+ I  R        VGN++I+MY KC  +  A++VF+ L     
Sbjct: 257 SEFDVVRAFRLGQCIHALI-VRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNIST 315

Query: 278 ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKA 337
           +SW+ +I+G    G   +AL++ +LM  +   P++VT+  ++++C     V     +F  
Sbjct: 316 VSWNILITGFGQAGSYAKALEVLNLMEESGSEPNEVTYSNMLASCIKARDVLSARAMFDK 375

Query: 338 MSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP---IEAEWSVWGALLNAC 390
           +S      P +  +  ++  Y +  L ++     R M    ++ + +    +L++C
Sbjct: 376 ISR-----PSVTTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSC 426



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 128/250 (51%), Gaps = 9/250 (3%)

Query: 133 HSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKE 192
            + R+L   N    NA L    R G L +   L  +MP RNVVSW T+I   A      E
Sbjct: 64  RAFRSLPRPNAYSYNAALSAARRAGDLDAARALLDEMPDRNVVSWNTVIAALARSERAGE 123

Query: 193 AVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAV 252
           A+ +++ M + +   P   TL +VLSAC +++AL  G+  H  ++ +  L  +  V NA+
Sbjct: 124 ALELYEGMLR-EGLVPTHFTLASVLSACGAVAALDDGRRCHG-LAVKVGLDENLFVENAL 181

Query: 253 INMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD 312
           + MY KCG V  A+++F+ +A  +++S++ ++ GL   G    AL+LF+ M  + V  D 
Sbjct: 182 LGMYTKCGGVEDAVRLFDGMASPNEVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDP 241

Query: 313 VTFIALISACSHGGLVDQGLI-LFKAMSTVYEIVPQM-----QHYA-CVVDMYGRAGLLE 365
           V   +++ +C+     +  ++  F+    ++ ++ +      QH    ++DMY +   ++
Sbjct: 242 VAVSSVLGSCAQACASEFDVVRAFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMD 301

Query: 366 EAEAFIREMP 375
           EA      +P
Sbjct: 302 EAVKVFDSLP 311



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 87/183 (47%), Gaps = 13/183 (7%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           ++   + +C+      +  +IHA +++ G+  ++++ ++L+  Y    ++  A   F+ +
Sbjct: 519 SYASMINSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDDARVFFDCM 578

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSAC--SSLVSHKL 126
           V  ++V+W  +I G ++ GF ++A+D+F      + +P+  T ++VL+ C  S LV   +
Sbjct: 579 VTKNIVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQRPDGVTFIAVLTGCSHSGLVDEAI 638

Query: 127 G---KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIG 182
                    + +  L E+   L    +D   R G L     L   MP K + + W  ++ 
Sbjct: 639 AFFNSMESTYGITPLAEHYTCL----IDGLGRAGRLVEVEALIDNMPCKDDPIVWEVLLA 694

Query: 183 GYA 185
             A
Sbjct: 695 ACA 697


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  270 bits (691), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 165/530 (31%), Positives = 275/530 (51%), Gaps = 73/530 (13%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFY----- 55
           M+S   + + +T T  L +C+         ++H  V++ G    + + NS+L+ Y     
Sbjct: 338 MVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGD 397

Query: 56  -VTVKDIFSAHQI-------------------------FNSVVFPDVVSWTTIISGLSKC 89
             T + +F   Q+                         F ++V   +VSW TII+G ++ 
Sbjct: 398 AETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQN 457

Query: 90  GFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRN-------- 137
           G    A+  F  +     ++P+A T+ SVLSAC++L   K+GK +H++ LR         
Sbjct: 458 GLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQI 517

Query: 138 -------------------------LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKR 172
                                    + + N+I   A+L+ Y++ G       +F  M  R
Sbjct: 518 MNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNR 577

Query: 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYV 232
           +V++WT MI GY + G   EA+ +F+ M      EPN  TL  VLSAC+S++ L +GK +
Sbjct: 578 DVIAWTAMIVGYHQNGQNDEAMELFRSMILIG-PEPNSHTLAAVLSACASLAYLDYGKQI 636

Query: 233 H-SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDKISWSTVISGLAMN 290
           H   I +  + SVS  V NA+I +Y + G V +A +VF+ + + K+ I+W+++I  +A +
Sbjct: 637 HCKAIRSLQEQSVS--VSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQH 694

Query: 291 GCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQH 350
           G G QA+ LF  M+   V PD +T++ ++SAC+H G VD+G   ++ M   + IVPQM H
Sbjct: 695 GLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSH 754

Query: 351 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKK 410
           YAC+VD++ RAGLL EA  FI+ MP+  +  VWG+LL ACR+ +N ++ +     L++  
Sbjct: 755 YACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLSID 814

Query: 411 GVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
             + G ++ ++N ++   RW D  +I    +  G+KK+TG SW  V   +
Sbjct: 815 PHNSGAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWTHVRGKV 864



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/418 (25%), Positives = 189/418 (45%), Gaps = 71/418 (16%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI- 102
           + F  NSLL  Y     +  AH +F  +   D VSWT +I GL++ G   +A+  F  + 
Sbjct: 280 NAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMV 339

Query: 103 --DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLA 160
                P+  TL +VLS+C+++ +  +G+ +H   ++    + + + N++L  Y +CG   
Sbjct: 340 SEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAE 399

Query: 161 SCGYLFVKMP-------------------------------KRNVVSWTTMIGGYAERGF 189
           +   +F +M                                +R++VSW T+I GY + G 
Sbjct: 400 TARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGL 459

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
              A+  F  M      EP+  T+ +VLSAC+++  L  GK +HSYI  R  +  S+ + 
Sbjct: 460 DGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYI-LRTGMPCSSQIM 518

Query: 250 NAVINM---------------------------------YVKCGDVGIAIQVFNMLAYKD 276
           NA+I+                                  YVK GD   A ++F+++  +D
Sbjct: 519 NALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRD 578

Query: 277 KISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG-LILF 335
            I+W+ +I G   NG   +A++LF  MI+    P+  T  A++SAC+    +D G  I  
Sbjct: 579 VIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHC 638

Query: 336 KAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           KA+ ++ E    + +   ++ +Y R+G +  A     ++    E   W +++ A   H
Sbjct: 639 KAIRSLQEQSVSVSN--AIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQH 694



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 146/334 (43%), Gaps = 82/334 (24%)

Query: 114 VLSACSSLVSHKLGKAIHAHSLR-----------NL--------------NENNIILD-- 146
           +L  C + V+   G+AIHAH+++           NL               E   + D  
Sbjct: 215 LLQLCRTAVNPSAGRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLFDDI 274

Query: 147 ----------NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSV 196
                     N++L  Y + G L     +F +MP R+ VSWT MI G    G   +AV  
Sbjct: 275 PYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKT 334

Query: 197 FQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMY 256
           F +M     A P++ TL NVLS+C+++ A   G+ VH ++  +  LS    V N+V+ MY
Sbjct: 335 FLDMVSEGFA-PSQFTLTNVLSSCAAMEACGVGRKVHPFV-VKLGLSSCVPVANSVLYMY 392

Query: 257 VKCGD-------------------------------VGIAIQVFNMLAYKDKISWSTVIS 285
            KCGD                               + +A+ +F  +  +  +SW+T+I+
Sbjct: 393 GKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIA 452

Query: 286 GLAMNGCGRQALQLFSLMI-INAVFPDDVTFIALISACSHGGLVDQG-----LILFKAMS 339
           G   NG    AL+ FS M+  +++ PD  T  +++SAC++  ++  G      IL   M 
Sbjct: 453 GYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMP 512

Query: 340 TVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIRE 373
              +I+        ++  Y ++G +E A   + +
Sbjct: 513 CSSQIM------NALISTYAKSGSVETARRIMDQ 540


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  270 bits (691), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 148/457 (32%), Positives = 261/457 (57%), Gaps = 9/457 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +T+   L+ C+     +   +IH+  I+ G   D+++   L+  Y     +  A +I 
Sbjct: 345 NQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKIL 404

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLVS 123
             +   DVVSWT++I+G  +  F +EA+  F     CG  V P+   L S  SAC+ + +
Sbjct: 405 EMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCG--VWPDNIGLASAASACAGIKA 462

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            + G  IHA    +    +I + N +++ Y RCG       LF ++  ++ ++W  +I G
Sbjct: 463 MRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISG 522

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           + +    K+A+ VF +M +   A+ N  T ++ +SA ++++ +  GK VH   + +   +
Sbjct: 523 FGQSRLYKQALMVFMKMGQAG-AKYNVFTFISAISALANLADIKQGKQVHGR-AVKTGHT 580

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
               V NA+I++Y KCG +  A  +F+ ++ ++++SW+T+I+  + +G G +AL LF  M
Sbjct: 581 SETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQM 640

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
               + P+DVTFI +++ACSH GLV++GL  FK+MS VY + P   HYACVVD+ GRAG 
Sbjct: 641 KQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQ 700

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           L+ A  F+ EMPI A   +W  LL+AC++H+N E+ +   + L+  +     ++ L+SN 
Sbjct: 701 LDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNA 760

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +A   +W + +++R  ++  G++K+ G SWIEV  ++
Sbjct: 761 YAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAV 797



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 120/422 (28%), Positives = 220/422 (52%), Gaps = 18/422 (4%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L AC+     QK  ++H+++++ G   D   + SLL  YV   DI +AH IFN  
Sbjct: 247 TVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLG 306

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
              +VV W  ++    +     ++ ++F  +    + PN  T   +L  C+     +LG+
Sbjct: 307 DRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGE 366

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IH+ S++N  E+++ +   ++D Y + G L     +   + KR+VVSWT+MI GY +  
Sbjct: 367 QIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHD 426

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS--YISTRYDLSVSN 246
           FC+EA++ F+EM+      P+   L +  SAC+ I A+  G  +H+  Y+S  Y   +S 
Sbjct: 427 FCEEALATFKEMQDCG-VWPDNIGLASAASACAGIKAMRQGLQIHARVYVSG-YAADIS- 483

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            + N ++N+Y +CG    A  +F  + +KD+I+W+ +ISG   +   +QAL +F  M   
Sbjct: 484 -IWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQA 542

Query: 307 AVFPDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
               +  TFI+ ISA ++   + QG  +  +A+ T +    ++ +   ++ +YG+ G +E
Sbjct: 543 GAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVAN--ALISLYGKCGSIE 600

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQDLVNKKGVS-VGTFALM 420
           +A+    EM +  E S W  ++ +C  H       ++FD+++Q+ +    V+ +G  A  
Sbjct: 601 DAKMIFSEMSLRNEVS-WNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAAC 659

Query: 421 SN 422
           S+
Sbjct: 660 SH 661



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 193/382 (50%), Gaps = 7/382 (1%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           Y  +  L AC+      +   IHA V +     + F+ N+L+  Y+       A ++F  
Sbjct: 145 YVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCD 204

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHKLG 127
           ++F D V++ T+ISG ++CG  + A+ +F  + +   +P+  T+ S+L+AC+S+   + G
Sbjct: 205 MLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKG 264

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           K +H++ L+     + I + ++LD Y++CG + +   +F    + NVV W  M+  Y + 
Sbjct: 265 KQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQI 324

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
               ++  +F +M+ T    PN+ T   +L  C+    +  G+ +HS +S +        
Sbjct: 325 SDLAKSFEIFGQMQATG-IHPNQFTYPCILRTCTCTGQIELGEQIHS-LSIKNGFESDMY 382

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V   +I+MY K G +  A ++  ML  +D +SW+++I+G   +    +AL  F  M    
Sbjct: 383 VSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCG 442

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           V+PD++   +  SAC+    + QGL +  A   V      +  +  +V++Y R G  EEA
Sbjct: 443 VWPDNIGLASAASACAGIKAMRQGLQI-HARVYVSGYAADISIWNTLVNLYARCGRSEEA 501

Query: 368 EAFIREMPIEAEWSVWGALLNA 389
            +  RE+  + E + W  L++ 
Sbjct: 502 FSLFREIEHKDEIT-WNGLISG 522



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 186/379 (49%), Gaps = 8/379 (2%)

Query: 13  FTQALKAC-SLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
            T AL+AC    +     LEIHA  +  G   D  I N L+  Y     ++ A Q+F  +
Sbjct: 45  LTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKEL 104

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGK 128
              D VSW  ++SG ++ G  KEA  ++  +    V P    L SVLSAC+       G+
Sbjct: 105 SSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGR 164

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IHA   +    +   + NA++  Y+  GS      +F  M   + V++ T+I G+A+ G
Sbjct: 165 MIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCG 224

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
             + A+ +F EM+ +    P+  T+ ++L+AC+S+  L  GK +HSY+  +  +S   + 
Sbjct: 225 HGECALQIFDEMQLSG-LRPDCVTVASLLAACASVGDLQKGKQLHSYL-LKAGMSFDYIT 282

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
             +++++YVKCGD+  A  +FN+    + + W+ ++          ++ ++F  M    +
Sbjct: 283 EGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGI 342

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            P+  T+  ++  C+  G ++ G  +  ++S        M     ++DMY + G L++A 
Sbjct: 343 HPNQFTYPCILRTCTCTGQIELGEQI-HSLSIKNGFESDMYVSGVLIDMYSKYGCLDKAR 401

Query: 369 AFIREMPIEAEWSVWGALL 387
             I EM  + +   W +++
Sbjct: 402 K-ILEMLEKRDVVSWTSMI 419



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 142/289 (49%), Gaps = 5/289 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M  C    ++     A  AC+     ++ L+IHA V   G+  DI I N+L++ Y     
Sbjct: 438 MQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGR 497

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
              A  +F  +   D ++W  +ISG  +   +K+A+ +F  +     K N  T +S +SA
Sbjct: 498 SEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISA 557

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
            ++L   K GK +H  +++  + +   + NA++  Y +CGS+     +F +M  RN VSW
Sbjct: 558 LANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSW 617

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
            T+I   ++ G   EA+ +F +M K +  +PN+ T + VL+ACS +  +  G      +S
Sbjct: 618 NTIITSCSQHGRGLEALDLFDQM-KQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMS 676

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDKISWSTVIS 285
             Y L+        V+++  + G +  A + V  M    + + W T++S
Sbjct: 677 NVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLS 725


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  270 bits (691), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 147/450 (32%), Positives = 255/450 (56%), Gaps = 5/450 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N+YTF  ALKA         A  +H  +++  +  D  +   LL  Y  + D+  A ++F
Sbjct: 246 NNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVF 305

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           N +   DVV W+ +I+   + GF  +A+D+F  +    V PN  TL S+L+ C+      
Sbjct: 306 NEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSG 365

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG+ +H   ++   + ++ + NA++D Y +C  + +   LF ++  +NVVSW T+I GY 
Sbjct: 366 LGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYE 425

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G   +A+++F+E  +  +    E T  + L AC+S++++  G  VH  ++ + + +  
Sbjct: 426 NLGEGGKALNMFREALRN-QVSVTEVTFSSALGACASLASMELGVQVHG-LAIKTNNAKR 483

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V N++I+MY KCGD+ +A  VFN +   D  SW+ +ISG + +G GRQAL++F +M  
Sbjct: 484 VAVSNSLIDMYAKCGDIKVAQTVFNEMETIDVASWNALISGYSTHGLGRQALRIFDIMKG 543

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
           +   P+ +TF+ ++S CS+ GL+DQG   F++M   + I P ++HY C+V ++GR+G L+
Sbjct: 544 SDCKPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHGIEPCLEHYTCMVRLFGRSGQLD 603

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           +A   I  +P E    +W A+L+A     N+E   R  ++++        T+ L+SN +A
Sbjct: 604 KAMNLIEGIPYEPSVMIWRAMLSASMNQYNEEFARRSAEEILKINPKDEATYVLLSNMYA 663

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
           GA +W +   IR  ++  G+KK+ G SWIE
Sbjct: 664 GAKQWANVASIRKSMKEKGVKKEPGLSWIE 693



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 192/389 (49%), Gaps = 9/389 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N + FT  LK        +    +H+ +++ G+  + F+  +L++ Y     + SA  +F
Sbjct: 145 NPHVFTSFLKLFVSLDKAEICWWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVF 204

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC--GID-VKPNANTLVSVLSACSSLVSHK 125
             ++  D+V W  I+S   + G  ++++ +    G+D   PN  T  + L A   L +  
Sbjct: 205 EGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFH 264

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
             K++H   L+   E +  +   +L  Y + G ++    +F +MPK +VV W+ MI  + 
Sbjct: 265 FAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFC 324

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSV 244
           + GFC +AV +F  M +     PNE TL ++L+ C+       G+ +H   +   +DL V
Sbjct: 325 QNGFCNKAVDIFIRM-REGFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDV 383

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
              V NA+I++Y KC  +  A+++F  L+ K+ +SW+TVI G    G G +AL +F   +
Sbjct: 384 --YVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYENLGEGGKALNMFREAL 441

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
            N V   +VTF + + AC+    ++ G +    ++       ++     ++DMY + G +
Sbjct: 442 RNQVSVTEVTFSSALGACASLASMELG-VQVHGLAIKTNNAKRVAVSNSLIDMYAKCGDI 500

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIH 393
           + A+    EM    + + W AL++    H
Sbjct: 501 KVAQTVFNEMET-IDVASWNALISGYSTH 528



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 154/339 (45%), Gaps = 24/339 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + + +   L+ C   +    A  IH  +++ G   D+F  N LL+ YV       A  +F
Sbjct: 48  DSHAYGTMLRRCIRKNDSVSAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLF 107

Query: 69  NSVVFPDVVSWTTIISGLS-------KCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSL 121
           + +   + VS+ T+  G +           H+E  ++        N +   S L    SL
Sbjct: 108 DEMPERNNVSYVTLTQGYACQDPVGLYSRLHREGHEL--------NPHVFTSFLKLFVSL 159

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
              ++   +H+  ++   ++N  +  A+++ Y  CGS+ S   +F  +  +++V W  ++
Sbjct: 160 DKAEICWWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIV 219

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRY 240
             Y E G  ++++ +   M       PN  T    L A   + A  F K VH  I  T Y
Sbjct: 220 SCYVENGCFEDSLQLLSRM-GMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCY 278

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
           +L     VG  ++ +Y + GD+  A +VFN +   D + WS +I+    NG   +A+ +F
Sbjct: 279 ELDPR--VGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIF 336

Query: 301 SLMIINAVFPDDVTFIALISACSHG---GLVDQ--GLIL 334
             M    V P++ T  ++++ C+ G   GL +Q  GL++
Sbjct: 337 IRMREGFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVV 375



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 119/249 (47%), Gaps = 9/249 (3%)

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           KAIH   L+  +  ++   N +L+ Y++ G       LF +MP+RN VS+ T+  GYA  
Sbjct: 69  KAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSYVTLTQGYA-- 126

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
             C++ V ++  + +    E N     + L    S+       ++HS I  +     +  
Sbjct: 127 --CQDPVGLYSRLHREGH-ELNPHVFTSFLKLFVSLDKAEICWWLHSPI-VKLGYDSNAF 182

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           VG A+IN Y  CG V  A  VF  +  KD + W+ ++S    NGC   +LQL S M ++ 
Sbjct: 183 VGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDG 242

Query: 308 VFPDDVTF-IALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
             P++ TF  AL ++   G       +  + + T YE+ P++     ++ +Y + G + +
Sbjct: 243 FMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVG--VGLLQLYTQLGDMSD 300

Query: 367 AEAFIREMP 375
           A     EMP
Sbjct: 301 AFKVFNEMP 309



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 3/117 (2%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S    TF+ AL AC+     +  +++H   I+  +   + + NSL+  Y    DI  A  
Sbjct: 446 SVTEVTFSSALGACASLASMELGVQVHGLAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQT 505

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAI---DMFCGIDVKPNANTLVSVLSACSS 120
           +FN +   DV SW  +ISG S  G  ++A+   D+  G D KPN  T + VLS CS+
Sbjct: 506 VFNEMETIDVASWNALISGYSTHGLGRQALRIFDIMKGSDCKPNGLTFLGVLSGCSN 562


>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g44880-like [Glycine max]
          Length = 599

 Score =  270 bits (691), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 147/456 (32%), Positives = 253/456 (55%), Gaps = 10/456 (2%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           P + + YTFT  +K C+      +   +H  V++ G   D+++  +L+  YV    + SA
Sbjct: 120 PFTPDGYTFTALVKGCATRVATGEGTLLHGMVLKNGVCFDLYVATALVDMYVKFGVLGSA 179

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSH 124
            ++F+ +     VSWT +I G ++CG   EA  +F  ++ +     +V+  +     V  
Sbjct: 180 RKVFDEMSVRSKVSWTAVIVGYARCGDMSEARRLFDEMEDRD----IVAFNAMIDGYV-- 233

Query: 125 KLGKAIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
           K+G    A  L N + E N++   +++  Y   G + +   +F  MP++NV +W  MIGG
Sbjct: 234 KMGCVGLARELFNEMRERNVVSWTSMVSGYCGNGDVENAKLMFDLMPEKNVFTWNAMIGG 293

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           Y +     +A+ +F+EM+ T   EPNE T+V VL A + + AL  G+++H + + R  L 
Sbjct: 294 YCQNRRSHDALELFREMQ-TASVEPNEVTVVCVLPAVADLGALDLGRWIHRF-ALRKKLD 351

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
            S  +G A+I+MY KCG++  A   F  +  ++  SW+ +I+G A+NGC ++AL++F+ M
Sbjct: 352 RSARIGTALIDMYAKCGEITKAKLAFEGMTERETASWNALINGFAVNGCAKEALEVFARM 411

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
           I     P++VT I ++SAC+H GLV++G   F AM   + I PQ++HY C+VD+ GRAG 
Sbjct: 412 IEEGFGPNEVTMIGVLSACNHCGLVEEGRRWFNAMER-FGIAPQVEHYGCMVDLLGRAGC 470

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           L+EAE  I+ MP +A   +  + L AC    +    +R+ +++V       G + ++ N 
Sbjct: 471 LDEAENLIQTMPYDANGIILSSFLFACGYFNDVLRAERVLKEVVKMDEDVAGNYVMLRNL 530

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPS 459
           +A   RW D   ++  +++ G  K+  CS IE+  S
Sbjct: 531 YATRQRWTDVEDVKQMMKKRGTSKEVACSVIEIGGS 566


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  270 bits (691), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 143/459 (31%), Positives = 259/459 (56%), Gaps = 9/459 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +TF+  LKAC L +  +K L+IH   ++ G    + + NSL+  Y     I  A ++F
Sbjct: 106 NEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVF 165

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLVS 123
             +V   ++SW  +I+G    G+  +A+D F       I  +P+  TL S+L ACSS   
Sbjct: 166 RRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGM 225

Query: 124 HKLGKAIHAHSLRN--LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
              GK IH   +R+     ++  +  +++D Y++CG L S    F ++ ++ ++SW+++I
Sbjct: 226 IYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLI 285

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
            GYA+ G   EA+ +F+ +++   ++ +   L +++   +  + L  GK + + ++ +  
Sbjct: 286 LGYAQEGEFVEAMGLFKRLQELN-SQIDSFALSSIIGVFADFALLRQGKQMQA-LAVKLP 343

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
             +   V N+V++MY+KCG V  A + F  +  KD ISW+ VI+G   +G G++++++F 
Sbjct: 344 SGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFY 403

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            M+ + + PD+V ++A++SACSH G++ +G  LF  +   + I P+++HYACVVD+ GRA
Sbjct: 404 EMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRA 463

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           G L+EA+  I  MPI+    +W  LL+ CR+H + E+   + + L+     +   + +MS
Sbjct: 464 GRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMS 523

Query: 422 NTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           N +  A  W +    R+     GLKK+ G SW+E+   +
Sbjct: 524 NLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIEREV 562



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 193/377 (51%), Gaps = 16/377 (4%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           L+ C+      +  ++H ++++ G   ++   N L+  Y   ++   A+++F+S+   +V
Sbjct: 13  LRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNV 72

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAH 133
           VSW+ ++SG    G  K ++ +F  +    + PN  T  + L AC  L + + G  IH  
Sbjct: 73  VSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGF 132

Query: 134 SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
            L+   E  + + N+++D Y +CG +     +F ++  R+++SW  MI G+   G+  +A
Sbjct: 133 CLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKA 192

Query: 194 VSVFQEMEKTKEAE-PNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSNLVGNA 251
           +  F  M++    E P+E TL ++L ACSS   +  GK +H + + + +    S  +  +
Sbjct: 193 LDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGS 252

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS-LMIINAVFP 310
           ++++YVKCG +  A + F+ +  K  ISWS++I G A  G   +A+ LF  L  +N+   
Sbjct: 253 LVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQI- 311

Query: 311 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP---QMQHYACVVDMYGRAGLLEEA 367
           D     ++I   +   L+ QG    K M  +   +P   +      VVDMY + GL++EA
Sbjct: 312 DSFALSSIIGVFADFALLRQG----KQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEA 367

Query: 368 EAFIREMPIEA--EWSV 382
           E    EM ++    W+V
Sbjct: 368 EKCFAEMQLKDVISWTV 384



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 124/230 (53%), Gaps = 7/230 (3%)

Query: 106 PNA-NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGY 164
           PN    LVS+L  C+       G  +H + L++ +  N+I  N ++D Y +C        
Sbjct: 3   PNQRQNLVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYK 62

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224
           +F  MP+RNVVSW+ ++ G+   G  K ++S+F EM + +   PNE T    L AC  ++
Sbjct: 63  VFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGR-QGIYPNEFTFSTNLKACGLLN 121

Query: 225 ALSFGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTV 283
           AL  G  +H + +   +++ V   VGN++++MY KCG +  A +VF  +  +  ISW+ +
Sbjct: 122 ALEKGLQIHGFCLKIGFEMMVE--VGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAM 179

Query: 284 ISGLAMNGCGRQALQLFSLMIINAV--FPDDVTFIALISACSHGGLVDQG 331
           I+G    G G +AL  F +M    +   PD+ T  +L+ ACS  G++  G
Sbjct: 180 IAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAG 229



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 98/182 (53%), Gaps = 6/182 (3%)

Query: 208 PNE-ATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
           PN+   LV++L  C+       G  VH Y+  +    ++ +  N +I+MY KC +  +A 
Sbjct: 3   PNQRQNLVSILRVCTRKGLSDQGGQVHCYL-LKSGSGLNLITSNYLIDMYCKCREPLMAY 61

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
           +VF+ +  ++ +SWS ++SG  +NG  + +L LFS M    ++P++ TF   + AC    
Sbjct: 62  KVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLN 121

Query: 327 LVDQGLILFK-AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 385
            +++GL +    +   +E++ ++ +   +VDMY + G + EAE   R + ++     W A
Sbjct: 122 ALEKGLQIHGFCLKIGFEMMVEVGN--SLVDMYSKCGRINEAEKVFRRI-VDRSLISWNA 178

Query: 386 LL 387
           ++
Sbjct: 179 MI 180


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  270 bits (691), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 149/461 (32%), Positives = 249/461 (54%), Gaps = 13/461 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACS-LAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK 59
           +L  PS   H T   ALK+ S L HP +   ++HA  ++     +  +  SLL  Y    
Sbjct: 64  LLPNPS---HLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCG 120

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAI----DMFCGIDVKPNANTLVSVL 115
            +  A ++F+ +  P  V WT +I+     G  +EA+    + F    ++P++ T V VL
Sbjct: 121 LLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFAN-GMRPDSFTAVRVL 179

Query: 116 SACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVV 175
           +AC+ +     G+ +   + +     ++ +  A +D Y++CG +A    +F KM  ++ V
Sbjct: 180 TACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAV 239

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           +W  M+GGYA  G  +EA+ +F  M+  +  +P+   +   LSAC+ + AL  G+     
Sbjct: 240 AWGAMVGGYASNGHPREALDLFLAMQ-AEGMKPDCYAVAGALSACTRLGALDLGRQAIRM 298

Query: 236 ISTRYDLSVSNLV-GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
           +   +D  + N V G A+I+MY KCG    A  VF  +  KD I W+ +I GL M G  +
Sbjct: 299 VD--WDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEK 356

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
            A  L   M  + V  +D TFI L+ +C+H GL+  G   F  M+ +Y I P+++HY C+
Sbjct: 357 IAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCM 416

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414
           VD+  RAGLL+EA   + +MP+ A   + GALL  C+IHRN E+ + + + L+  +  + 
Sbjct: 417 VDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNS 476

Query: 415 GTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
           G + ++SN ++   RWED  K+R +++  G++K   CSW+E
Sbjct: 477 GNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVE 517


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  270 bits (691), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 149/461 (32%), Positives = 249/461 (54%), Gaps = 13/461 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACS-LAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK 59
           +L  PS   H T   ALK+ S L HP +   ++HA  ++     +  +  SLL  Y    
Sbjct: 519 LLPNPS---HLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCG 575

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAI----DMFCGIDVKPNANTLVSVL 115
            +  A ++F+ +  P  V WT +I+     G  +EA+    + F    ++P++ T V VL
Sbjct: 576 LLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFAN-GMRPDSFTAVRVL 634

Query: 116 SACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVV 175
           +AC+ +     G+ +   + +     ++ +  A +D Y++CG +A    +F KM  ++ V
Sbjct: 635 TACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAV 694

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           +W  M+GGYA  G  +EA+ +F  M+  +  +P+   +   LSAC+ + AL  G+     
Sbjct: 695 AWGAMVGGYASNGHPREALDLFLAMQ-AEGMKPDCYAVAGALSACTRLGALDLGRQAIRM 753

Query: 236 ISTRYDLSVSNLV-GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
           +   +D  + N V G A+I+MY KCG    A  VF  +  KD I W+ +I GL M G  +
Sbjct: 754 VD--WDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEK 811

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
            A  L   M  + V  +D TFI L+ +C+H GL+  G   F  M+ +Y I P+++HY C+
Sbjct: 812 IAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCM 871

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414
           VD+  RAGLL+EA   + +MP+ A   + GALL  C+IHRN E+ + + + L+  +  + 
Sbjct: 872 VDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNS 931

Query: 415 GTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
           G + ++SN ++   RWED  K+R +++  G++K   CSW+E
Sbjct: 932 GNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVE 972


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  270 bits (691), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 156/444 (35%), Positives = 237/444 (53%), Gaps = 40/444 (9%)

Query: 55  YVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTL 111
           YV   ++ +A Q  + +    VV+W  +ISG    GF  EA++MF     + ++ +  T 
Sbjct: 235 YVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTY 294

Query: 112 VSVLSACSSLVSHKLGKAIHAHSLR---------NLNENNIILD---------------- 146
            SVLSAC++      GK +HA+ LR         +L+ NN +                  
Sbjct: 295 TSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFN 354

Query: 147 ----------NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSV 196
                     NAIL  Y+  G +      F +MP+RN+++WT MI G A+ GF +E++ +
Sbjct: 355 QMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKL 414

Query: 197 FQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMY 256
           F  M K++  EP +      + AC+ ++AL  G+ +H+ +  R     S   GNA+I MY
Sbjct: 415 FNRM-KSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQL-VRLGFDSSLSAGNALITMY 472

Query: 257 VKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFI 316
            KCG V  A  +F  + Y D +SW+ +I+ L  +G G QAL+LF LM+   + PD +TF+
Sbjct: 473 AKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFL 532

Query: 317 ALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPI 376
            ++S CSH GLV++G   FK+MS +Y I P   HYA ++D+  RAG   EA+  I  MP+
Sbjct: 533 TVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPV 592

Query: 377 EAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKI 436
           E    +W ALL  CRIH N ++  +  + L        GT+ L+SN +A   RW+D  K+
Sbjct: 593 EPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKV 652

Query: 437 RDEIRRMGLKKKTGCSWIEVNPSI 460
           R  +R  G+KK+ GCSWIEV   +
Sbjct: 653 RKLMRDKGVKKEPGCSWIEVENKV 676



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 132/522 (25%), Positives = 212/522 (40%), Gaps = 133/522 (25%)

Query: 13  FTQALKACSLAHP--HQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +   L+ C   +P  +  A  +HAH+I  G     +I N L+  Y    D+ SAH +F+ 
Sbjct: 16  YAAQLQQCCPHNPMSYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDE 75

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV-------------------------- 104
           +  PD+V+ TT+I+  S  G    A ++F    +                          
Sbjct: 76  IRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIE 135

Query: 105 ----------KPNANTLVSVLSACSSLVS-HKLGKAIHAHSLRNLNENNIILDNAILDFY 153
                     +P+  T  SVL A + +V   K  + IH   +++ +     + NA+L  +
Sbjct: 136 LFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVF 195

Query: 154 IRCGS---------LASCGYLFVKMPKRNVVSWTT------------------------- 179
           ++C S         +A+   LF +M +R+ +SWTT                         
Sbjct: 196 VKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKL 255

Query: 180 ------MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
                 MI GY   GF  EA+ +F++M      + +E T  +VLSAC++      GK VH
Sbjct: 256 VVAWNAMISGYVHHGFFLEALEMFRKMYLLG-IQWDEFTYTSVLSACANAGFFLHGKQVH 314

Query: 234 SYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTV------- 283
           +YI     R  L  S  V NA+  +Y KCG V  A QVFN +  KD +SW+ +       
Sbjct: 315 AYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNA 374

Query: 284 ------------------------ISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALI 319
                                   ISGLA NG G ++L+LF+ M      P D  F   I
Sbjct: 375 GRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAI 434

Query: 320 SACS------HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIRE 373
            AC+      HG  +   L+     S+       +     ++ MY + G++E A      
Sbjct: 435 IACAWLAALMHGRQLHAQLVRLGFDSS-------LSAGNALITMYAKCGVVEAAHCLFLT 487

Query: 374 MPIEAEWSVWGALLNACRIHRND----EMFD-RIRQDLVNKK 410
           MP     S W A++ A   H +     E+F+  +++D++  +
Sbjct: 488 MPYLDSVS-WNAMIAALGQHGHGAQALELFELMLKEDILPDR 528



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 90/395 (22%), Positives = 163/395 (41%), Gaps = 77/395 (19%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHL----HDIFIQNSLLHFYVTVKDIF 62
            ++ +T+T  L AC+ A       ++HA+++           + + N+L   Y     + 
Sbjct: 288 QWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVD 347

Query: 63  SAHQIFNSVVFPDVVS-------------------------------WTTIISGLSKCGF 91
            A Q+FN +   D+VS                               WT +ISGL++ GF
Sbjct: 348 EARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGF 407

Query: 92  HKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148
            +E++ +F  +     +P        + AC+ L +   G+ +HA  +R   ++++   NA
Sbjct: 408 GEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNA 467

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
           ++  Y +CG + +   LF+ MP  + VSW  MI    + G   +A+ +F+ M K ++  P
Sbjct: 468 LITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLK-EDILP 526

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           +  T + VLS CS    +  G         RY  S+S L G         C       ++
Sbjct: 527 DRITFLTVLSTCSHAGLVEEGH--------RYFKSMSGLYG--------ICPGEDHYARM 570

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
            ++L    K S               +A  +   M +    P    + AL++ C   G +
Sbjct: 571 IDLLCRAGKFS---------------EAKDMIETMPVE---PGPPIWEALLAGCRIHGNM 612

Query: 329 DQGLILFKAMSTVYEIVPQMQ-HYACVVDMYGRAG 362
           D G+   +A   ++E++PQ    Y  + +MY   G
Sbjct: 613 DLGI---QAAERLFELMPQHDGTYVLLSNMYATVG 644



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 80/393 (20%), Positives = 165/393 (41%), Gaps = 88/393 (22%)

Query: 96  IDMFCGIDVKPNANTLVSVLSAC--SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFY 153
           +DM    +V+  AN   + L  C   + +S+ + + +HAH + +  +    + N ++D Y
Sbjct: 1   MDMRNAANVRRLANQYAAQLQQCCPHNPMSYSIARTVHAHMIASGFKPRGYILNRLIDVY 60

Query: 154 IRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG---FCKE------------------ 192
            +   L S  +LF ++ + ++V+ TT+I  ++  G     +E                  
Sbjct: 61  CKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAM 120

Query: 193 ------------AVSVFQEMEKTKEAEPNEATLVNVLSACSSI-SALSFGKYVHSYISTR 239
                       A+ +F+++ +     P+  T  +VL A + I       + +H  +   
Sbjct: 121 ITGYSHNNDGFGAIELFRDLLRNG-FRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKS 179

Query: 240 YDLSVSNLVGNAVINMYVKCG---------DVGIAIQVFNMLAYKDKISWSTVISGLAMN 290
               V++++ NA+++++VKC           +  A ++F+ +  +D++SW+T+I+G   N
Sbjct: 180 GSGFVTSVL-NALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRN 238

Query: 291 G---CGRQ----------------------------ALQLFSLMIINAVFPDDVTFIALI 319
           G     RQ                            AL++F  M +  +  D+ T+ +++
Sbjct: 239 GELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVL 298

Query: 320 SACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV----VDMYGRAGLLEEAEAFIREMP 375
           SAC++ G    G  +  A     E  P +     V      +Y + G ++EA     +MP
Sbjct: 299 SACANAGFFLHGKQV-HAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMP 357

Query: 376 IEAEWSVWGALL----NACRIHRNDEMFDRIRQ 404
           ++ +   W A+L    NA RI      F+ + +
Sbjct: 358 VK-DLVSWNAILSGYVNAGRIDEAKSFFEEMPE 389


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  270 bits (691), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 155/471 (32%), Positives = 267/471 (56%), Gaps = 13/471 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           +LS   +   +T+   + +C+  +    A  +H H++E G   D F+   L++ Y     
Sbjct: 61  LLSLEPNPAQHTYELLILSCTHQNSLLDAQRVHRHLLENGFDQDPFLATKLINMYSFFDS 120

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSA 117
           I +A ++F+      +  +  +   LS  G  +E ++M+     I +  +  T   VL A
Sbjct: 121 IDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEVLNMYRRMNSIGIPSDRFTYTYVLKA 180

Query: 118 CS------SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK 171
           C       SL++   G+ IHAH LR+  +  + +   ++D Y + G +++   +F +MP 
Sbjct: 181 CVASECFVSLLNK--GREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPV 238

Query: 172 RNVVSWTTMIGGYAERGFCKEAVSVFQE-MEKTKEAEPNEATLVNVLSACSSISALSFGK 230
           +NVVSW+ MI  YA+ G   EA+ +F+E M +T++  PN  T+V+VL AC++++AL  G+
Sbjct: 239 KNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGR 298

Query: 231 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMN 290
            +H YI  R  L     V +A++ MY +CG + +  +VF+ +  +D +SW+++IS   ++
Sbjct: 299 LIHGYI-LRKGLDSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVH 357

Query: 291 GCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQH 350
           G G++A+ +F  M  N V P  ++F++++ ACSH GLVD+G +LF +M   + I P ++H
Sbjct: 358 GFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSVEH 417

Query: 351 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKK 410
           YAC+VD+ GRA  LEEA   I  M IE    VWG+LL +CRIH N E+ +R    L + +
Sbjct: 418 YACMVDLLGRANRLEEAAKIIENMRIEPGPKVWGSLLGSCRIHCNVELAERASIRLFDLE 477

Query: 411 GVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
             + G + L+++ +A A  W+   +++  +   GL+K  G SWIEV   I+
Sbjct: 478 PTNAGNYVLLADIYAEAGMWDGVKRVKKLLEARGLQKVPGRSWIEVKRKIY 528


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  270 bits (691), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 139/418 (33%), Positives = 245/418 (58%), Gaps = 13/418 (3%)

Query: 45  IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF----- 99
           + + N+L+   +  K I  A  +F  +V  D ++WTT+++GL++ G   EA+D+F     
Sbjct: 212 VVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRA 271

Query: 100 --CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCG 157
              GID      T  S+L+AC +L + + GK IHA+  R   E+N+ + +A++D Y +C 
Sbjct: 272 EGVGID----QYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCR 327

Query: 158 SLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVL 217
           S+     +F +M  RN++SWT MI GY +    +EAV  F EM+     +P++ TL +V+
Sbjct: 328 SIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQ-MDGIKPDDFTLGSVI 386

Query: 218 SACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK 277
           S+C+++++L  G   H  ++    L     V NA++ +Y KCG +  A ++F+ +++ D+
Sbjct: 387 SSCANLASLEEGAQFHC-LALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ 445

Query: 278 ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKA 337
           +SW+ +++G A  G  ++ + LF  M++N + PD VTFI ++SACS  GLV++G   F +
Sbjct: 446 VSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDS 505

Query: 338 MSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
           M   ++IVP   HY C++D+Y R+G  +EAE FI++MP   +   W  LL++CR+  N E
Sbjct: 506 MQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNME 565

Query: 398 MFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
           +     ++L+     +  ++ L+ +  A   +W +   +R  +R   +KK+ GCSWI+
Sbjct: 566 IGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIK 623



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 197/402 (49%), Gaps = 42/402 (10%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI- 102
           ++F +N+LL      + +    ++F S+   D VS+  +I+G S  G    ++ ++  + 
Sbjct: 78  NLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALL 137

Query: 103 ---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR----------------------- 136
               V+P   TL +++   S+L    LG ++H   LR                       
Sbjct: 138 REESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLI 197

Query: 137 --------NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
                    +    +++ N ++   +RC  +     LF  M  R+ ++WTTM+ G  + G
Sbjct: 198 RDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNG 257

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS-TRYDLSVSNL 247
              EA+ VF+ M + +    ++ T  ++L+AC +++A   GK +H+YI+ T Y+ +V   
Sbjct: 258 LQLEALDVFRRM-RAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNV--F 314

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           VG+A+++MY KC  + +A  VF  +  ++ ISW+ +I G   N C  +A++ FS M ++ 
Sbjct: 315 VGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDG 374

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           + PDD T  ++IS+C++   +++G   F  ++ V  ++  +     +V +YG+ G +E+A
Sbjct: 375 IKPDDFTLGSVISSCANLASLEEG-AQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDA 433

Query: 368 EAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDRIRQDLVN 408
                EM    + S W AL+    +  +  E  D   + LVN
Sbjct: 434 HRLFDEMSFHDQVS-WTALVTGYAQFGKAKETIDLFEKMLVN 474



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 143/287 (49%), Gaps = 5/287 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YTF   L AC      ++  +IHA++    +  ++F+ ++L+  Y   + I  A  +F
Sbjct: 277 DQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVF 336

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   +++SWT +I G  +    +EA+  F  +    +KP+  TL SV+S+C++L S +
Sbjct: 337 RRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLE 396

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G   H  +L +     I + NA++  Y +CGS+     LF +M   + VSWT ++ GYA
Sbjct: 397 EGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYA 456

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G  KE + +F++M      +P+  T + VLSACS    +  G      +   +D+   
Sbjct: 457 QFGKAKETIDLFEKM-LVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPI 515

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDKISWSTVISGLAMNG 291
           +     +I++Y + G    A +    + +  D   W+T++S   + G
Sbjct: 516 DDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRG 562


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  270 bits (691), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 155/449 (34%), Positives = 252/449 (56%), Gaps = 39/449 (8%)

Query: 49  NSLLHFYVTVKDIFSAHQIFNSVVFP--DVVSWTTIISGLSKCGFHKEAIDMFC---GID 103
           NS++  +     +  A +IFN V     D+VSW+ ++S   +    +EA+ +F    G  
Sbjct: 206 NSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSG 265

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFY---------- 153
           V  +   +VS LSACS +++ ++G+ +H  +++   E+ + L NA++  Y          
Sbjct: 266 VAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDAR 325

Query: 154 ----------------------IRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
                                 +RCGS+     LF  MP+++VVSW+ MI GYA+     
Sbjct: 326 RIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFS 385

Query: 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNA 251
           EA+++FQEM+      P+E  LV+ +SAC+ ++ L  GK++H+YIS R  L V+ ++   
Sbjct: 386 EALALFQEMQ-LHGVRPDETALVSAISACTHLATLDLGKWIHAYIS-RNKLQVNVILSTT 443

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD 311
           +I+MY+KCG V  A++VF  +  K   +W+ VI GLAMNG   Q+L +F+ M      P+
Sbjct: 444 LIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPN 503

Query: 312 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFI 371
           ++TF+ ++ AC H GLV+ G   F +M   ++I   ++HY C+VD+ GRAGLL+EAE  I
Sbjct: 504 EITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELI 563

Query: 372 REMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWE 431
             MP+  + + WGALL ACR HR++EM +R+ + L+  +    G   L+SN +A    W 
Sbjct: 564 DSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQPDHDGFHVLLSNIYASKGNWG 623

Query: 432 DTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +  +IR  + + G+ K  GCS IE N ++
Sbjct: 624 NVLEIRGIMAQHGVVKTPGCSMIEANGTV 652



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/419 (25%), Positives = 192/419 (45%), Gaps = 72/419 (17%)

Query: 2   LSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDI 61
           L+  +  + YT+   L+ C+      +  ++HAH +  G   D++++N+L++ Y     +
Sbjct: 97  LASHAKPDSYTYPILLQCCAARVSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSV 156

Query: 62  FSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSL 121
            SA ++F      D+VSW T+++G  + G  +EA  +F G+   P  NT+ S        
Sbjct: 157 GSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGM---PERNTIAS-------- 205

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLF--VKMPKRNVVSWTT 179
                                    N+++  + R G +     +F  V+  +R++VSW+ 
Sbjct: 206 -------------------------NSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSA 240

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH------ 233
           M+  Y +    +EA+ +F EM K      +E  +V+ LSACS +  +  G++VH      
Sbjct: 241 MVSCYEQNEMGEEALVLFVEM-KGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKV 299

Query: 234 ---SYISTRYDL-----SVSNLVG-----------------NAVINMYVKCGDVGIAIQV 268
               Y+S +  L     S   +V                  N++I+ Y++CG +  A  +
Sbjct: 300 GVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEML 359

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F  +  KD +SWS +ISG A + C  +AL LF  M ++ V PD+   ++ ISAC+H   +
Sbjct: 360 FYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATL 419

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           D G  +   +S   ++   +     ++DMY + G +E A      M  E   S W A++
Sbjct: 420 DLGKWIHAYISR-NKLQVNVILSTTLIDMYMKCGCVENALEVFYAME-EKGVSTWNAVI 476



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 112/195 (57%), Gaps = 4/195 (2%)

Query: 40  GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF 99
           G L D+   NS++  Y+    I  A  +F S+   DVVSW+ +ISG ++     EA+ +F
Sbjct: 332 GELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALF 391

Query: 100 CGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRC 156
             +    V+P+   LVS +SAC+ L +  LGK IHA+  RN  + N+IL   ++D Y++C
Sbjct: 392 QEMQLHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKC 451

Query: 157 GSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNV 216
           G + +   +F  M ++ V +W  +I G A  G  ++++++F +M+KT    PNE T + V
Sbjct: 452 GCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTV-PNEITFMGV 510

Query: 217 LSACSSISALSFGKY 231
           L AC  +  ++ G++
Sbjct: 511 LGACRHMGLVNDGRH 525



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 95/213 (44%), Gaps = 14/213 (6%)

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224
           +F  +   N  +W T++  +           +  ++     A+P+  T   +L  C++  
Sbjct: 60  IFNHLRNPNTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARV 119

Query: 225 ALSFGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTV 283
           +   G+ +H++ +S+ +D  V   V N ++N+Y  CG VG A +VF      D +SW+T+
Sbjct: 120 SEFEGRQLHAHAVSSGFDGDV--YVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTL 177

Query: 284 ISGLAMNGCGRQALQLFSLMIINAVFPDDVTFI--ALISACSHGGLVDQGLILFKAMSTV 341
           ++G    G   +A ++F  M      P+  T    ++I+     G V++   +F  +   
Sbjct: 178 LAGYVQAGEVEEAERVFEGM------PERNTIASNSMIALFGRKGCVEKARRIFNGVRGR 231

Query: 342 YEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
                 M  ++ +V  Y +  + EEA     EM
Sbjct: 232 ER---DMVSWSAMVSCYEQNEMGEEALVLFVEM 261



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 17/182 (9%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
              A+ AC+          IHA++       ++ +  +L+  Y+    + +A ++F ++ 
Sbjct: 406 LVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAME 465

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK-----PNANTLVSVLSACSSL-----V 122
              V +W  +I GL+  G  +++++MF   D+K     PN  T + VL AC  +      
Sbjct: 466 EKGVSTWNAVILGLAMNGSVEQSLNMFA--DMKKTGTVPNEITFMGVLGACRHMGLVNDG 523

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMI 181
            H     IH H +    E NI     ++D   R G L     L   MP   +V +W  ++
Sbjct: 524 RHYFNSMIHEHKI----EANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALL 579

Query: 182 GG 183
           G 
Sbjct: 580 GA 581


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  270 bits (691), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 148/419 (35%), Positives = 234/419 (55%), Gaps = 11/419 (2%)

Query: 41  HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC 100
           ++ D+   N+++  Y     I  A Q+F+     DV +WT ++SG  +    +EA ++F 
Sbjct: 246 NVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELF- 304

Query: 101 GIDVKPNANTLVSVLSACSSLVSHKLGKAIH-AHSLRNLNE-NNIILDNAILDFYIRCGS 158
             D  P  N +    S  + L  +  G+ +  A  L ++    N+   N ++  Y +CG 
Sbjct: 305 --DKMPERNEV----SWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGK 358

Query: 159 LASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLS 218
           ++    LF KMPKR+ VSW  MI GY++ G   EA+ +F +ME+ +    N ++  + LS
Sbjct: 359 ISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMER-EGGRLNRSSFSSALS 417

Query: 219 ACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI 278
            C+ + AL  GK +H  +  +        VGNA++ MY KCG +  A  +F  +A KD +
Sbjct: 418 TCADVVALELGKQLHGRL-VKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIV 476

Query: 279 SWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM 338
           SW+T+I+G + +G G  AL+ F  M    + PDD T +A++SACSH GLVD+G   F  M
Sbjct: 477 SWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTM 536

Query: 339 STVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEM 398
           +  Y ++P  QHYAC+VD+ GRAGLLE+A   ++ MP E + ++WG LL A R+H N E+
Sbjct: 537 TQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTEL 596

Query: 399 FDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            +     +   +  + G + L+SN +A + RW D  K+R  +R  G+KK  G SWIE+ 
Sbjct: 597 AETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQ 655



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 156/374 (41%), Gaps = 69/374 (18%)

Query: 43  HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI 102
            D+   N ++  YV  +++  A ++F  +   DV SW T++SG ++ G   +A  +F  +
Sbjct: 124 RDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRM 183

Query: 103 DVKPNA--NTLVSVL-------SACSSLVSH----------------KLGKAIHAHS-LR 136
             K +   N L+S          AC    S                 K  K + A     
Sbjct: 184 PEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFD 243

Query: 137 NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSV 196
           ++N  +++  N I+  Y + G +     LF + P ++V +WT M+ GY +    +EA  +
Sbjct: 244 SMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEAREL 303

Query: 197 FQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMY 256
           F +M      E NE +   +L+       +   K +   +  R   +VS    N +I  Y
Sbjct: 304 FDKM-----PERNEVSWNAMLAGYVQGERMEMAKELFDVMPCR---NVSTW--NTMITGY 353

Query: 257 VKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFI 316
            +CG +  A  +F+ +  +D +SW+ +I+G + +G   +AL+LF  M       +  +F 
Sbjct: 354 AQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFS 413

Query: 317 ALISACS-----------HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD-----MYGR 360
           + +S C+           HG LV  G          YE         C V      MY +
Sbjct: 414 SALSTCADVVALELGKQLHGRLVKGG----------YET-------GCFVGNALLLMYCK 456

Query: 361 AGLLEEAEAFIREM 374
            G +EEA    +EM
Sbjct: 457 CGSIEEANDLFKEM 470



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 149/332 (44%), Gaps = 29/332 (8%)

Query: 75  DVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHS 134
           D+  W   IS   + G   EA+ +F  +  + ++ +   ++S        +L + +    
Sbjct: 63  DIKEWNVAISSYMRTGRCNEALRVFKRMP-RWSSVSYNGMISGYLRNGEFELARKL---- 117

Query: 135 LRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAV 194
              + E +++  N ++  Y+R  +L     LF  MP+R+V SW TM+ GYA+ G   +A 
Sbjct: 118 FDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDAR 177

Query: 195 SVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVIN 254
           SVF  M      E N+ +   +LSA    S +     +     +R + ++ +   N ++ 
Sbjct: 178 SVFDRM-----PEKNDVSWNALLSAYVQNSKMEEACML---FKSRENWALVSW--NCLLG 227

Query: 255 MYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVT 314
            +VK   +  A Q F+ +  +D +SW+T+I+G A +G   +A QLF    +  VF    T
Sbjct: 228 GFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVF----T 283

Query: 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
           + A++S      +V++   LF  M    E+      +  ++  Y +   +E A+     M
Sbjct: 284 WTAMVSGYIQNRMVEEARELFDKMPERNEV-----SWNAMLAGYVQGERMEMAKELFDVM 338

Query: 375 PIEAEWSVWGALLNA----CRIHRNDEMFDRI 402
           P     S W  ++       +I     +FD++
Sbjct: 339 PCR-NVSTWNTMITGYAQCGKISEAKNLFDKM 369



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 88/183 (48%), Gaps = 13/183 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  +F+ AL  C+     +   ++H  +++ G+    F+ N+LL  Y     I  A+ +F
Sbjct: 408 NRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLF 467

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   D+VSW T+I+G S+ GF + A+  F  +    +KP+  T+V+VLSACS      
Sbjct: 468 KEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVD 527

Query: 126 LGKAIHAHSLRNLNENNIILDNA-----ILDFYIRCGSLASCGYLFVKMP-KRNVVSWTT 179
            G+         + ++  ++ N+     ++D   R G L     L   MP + +   W T
Sbjct: 528 KGR----QYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGT 583

Query: 180 MIG 182
           ++G
Sbjct: 584 LLG 586



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 112/267 (41%), Gaps = 45/267 (16%)

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
            +K    ++  W   I  Y   G C EA+ VF+ M +      N      ++S       
Sbjct: 56  LLKCGDSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYN-----GMISGYLRNGE 110

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285
               + +   +  R DL    +  N +I  YV+  ++G A ++F ++  +D  SW+T++S
Sbjct: 111 FELARKLFDEMPER-DL----VSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLS 165

Query: 286 GLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST----- 340
           G A NGC   A  +F  M       +DV++ AL+SA      +++  +LFK+        
Sbjct: 166 GYAQNGCVDDARSVFDRMPEK----NDVSWNALLSAYVQNSKMEEACMLFKSRENWALVS 221

Query: 341 ----------VYEIVPQMQHYA-----------CVVDMYGRAGLLEEAEAFIREMPIEAE 379
                       +IV   Q +             ++  Y ++G ++EA     E P++  
Sbjct: 222 WNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDV 281

Query: 380 WSVWGALLNAC----RIHRNDEMFDRI 402
           ++ W A+++       +    E+FD++
Sbjct: 282 FT-WTAMVSGYIQNRMVEEARELFDKM 307


>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 518

 Score =  270 bits (691), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 152/463 (32%), Positives = 256/463 (55%), Gaps = 38/463 (8%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVK--DIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           +IH  +++ G +      + LL  Y +++  ++  A  +F+ +  P+ V W T+I   S 
Sbjct: 29  QIHGQLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRISSPNTVMWNTMIRAYSN 88

Query: 89  CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIH-------------- 131
               +EA+ ++  +    +  NA T   +L ACS+L +      IH              
Sbjct: 89  SNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQIHVQIIKRGFGSEVYA 148

Query: 132 ----------------AHSLRNL-NENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV 174
                           AH L +L    +I+  N ++D YI+CG++     +F  MP++NV
Sbjct: 149 TNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNV 208

Query: 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
           +SWT+MI G+   G  KEA+ + Q+M      +P++ TL   LSAC+ + AL  GK++H+
Sbjct: 209 ISWTSMIVGFVRTGMHKEALCLLQQM-LVAGIKPDKITLSCSLSACAGLGALEQGKWIHT 267

Query: 235 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
           YI  +  + +  ++G A+I+MYVKCG++  A+ VF+ L  K   +W+ +I G A++G G 
Sbjct: 268 YIG-KNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGS 326

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
           +AL  F+ M    + P   TF A+++ACSH GLV++G  LF++MST Y + P M+HY C+
Sbjct: 327 EALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGKSLFESMSTFYNMKPVMEHYGCM 386

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414
           VD+ GRAG L+EA+ F+  MPI+   ++WG+LLNAC +H++ E+   I + L+       
Sbjct: 387 VDLLGRAGFLKEAKEFVESMPIKPNAAIWGSLLNACHLHKHLELGKEIGKFLIELDPEHD 446

Query: 415 GTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           G +  +++  A A  W++ +++R  I+  GL    GCS I +N
Sbjct: 447 GRYIHLASIHAAAGEWDEASQVRSHIKNKGLLNLPGCSTITLN 489



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 91/280 (32%), Positives = 136/280 (48%), Gaps = 43/280 (15%)

Query: 1   MLSCPSSYNHYTFTQALKACS----LAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYV 56
           ML     +N YTF   LKACS    LA  HQ    IH  +I+ G   +++  NSLL  Y 
Sbjct: 102 MLHHSIPHNAYTFPFLLKACSALSALAETHQ----IHVQIIKRGFGSEVYATNSLLRVYA 157

Query: 57  TVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC--------------------------- 89
               I SAH +F+ +   D+VSW T+I G  KC                           
Sbjct: 158 ISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVG 217

Query: 90  ----GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN 142
               G HKEA+ +   +    +KP+  TL   LSAC+ L + + GK IH +  +N  + +
Sbjct: 218 FVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSACAGLGALEQGKWIHTYIGKNKIKID 277

Query: 143 IILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202
            +L  A++D Y++CG +     +F K+ K+ V +WT +IGG+A  G   EA+  F +M+K
Sbjct: 278 PVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQMQK 337

Query: 203 TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
               +P   T   VL+ACS    +  GK +   +ST Y++
Sbjct: 338 AG-IKPTSFTFTAVLTACSHTGLVEEGKSLFESMSTFYNM 376


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 149/456 (32%), Positives = 249/456 (54%), Gaps = 8/456 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T   +L+A + A        +H + ++ G      +   L+  Y    D+ SA  +F+ +
Sbjct: 214 TLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRM 273

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHKLGK 128
             PD+V++  +ISG S  G  + ++++F  +     +PN++TLV+V+   S      L +
Sbjct: 274 DNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLAR 333

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +HA  ++   + + ++  A+   Y R   + S   +F  M ++ + SW  MI GYA+ G
Sbjct: 334 CLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNG 393

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
             + AV++FQ M++    +PN  T+ + LSAC+ + ALS GK+VH  IS +  L ++  V
Sbjct: 394 LTEMAVALFQLMQELN-VQPNPITISSTLSACAHLGALSLGKWVHRIIS-KEKLELNVYV 451

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
             A+I+MY KCG +  A  +F+ +  K+ +SW+ +ISG  ++G G +AL+L+  M+   +
Sbjct: 452 MTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARI 511

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            P   TF+++I ACSHGGLVD+G  +F+ M+  Y I P ++H  C+VD+ GRAG L EA 
Sbjct: 512 LPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKLNEAL 571

Query: 369 AFIREMPIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
             I E P  A    VWGALL AC +H+N ++     Q L      + G + L+SN +   
Sbjct: 572 ELISEFPQSAIGPGVWGALLGACMVHKNSDLAKLASQKLFELDSENAGYYVLLSNLYTSK 631

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEV--NPSIF 461
             + +   +R E +   L K  GC+ IE+   P +F
Sbjct: 632 KHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPHVF 667



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 190/383 (49%), Gaps = 6/383 (1%)

Query: 29  ALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           A  +H   +  G+  D F+ ++L   Y  +     A ++F++V  PD + W T+++GL  
Sbjct: 133 ARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLPG 192

Query: 89  CGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR-NLNENNIILDN 147
               +  + M     V+P++ TL S L A +      +G+ +H + ++  L E+  ++  
Sbjct: 193 SEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVV-T 251

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
            ++  Y +CG + S  +LF +M   ++V++  +I GY+  G  + +V +F+E+  +    
Sbjct: 252 GLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGW-R 310

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
           PN +TLV V+   S        + +H+++  +  L    LV  A+  +Y +  D+  A  
Sbjct: 311 PNSSTLVAVIPVYSPFGHELLARCLHAFV-VKARLDADALVSTALTTLYCRLNDMESARS 369

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           +F+ +  K   SW+ +ISG A NG    A+ LF LM    V P+ +T  + +SAC+H G 
Sbjct: 370 IFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGA 429

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           +  G  + + +S   ++   +     ++DMY + G + EA +    M  +   S W A++
Sbjct: 430 LSLGKWVHRIISK-EKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVS-WNAMI 487

Query: 388 NACRIHRNDEMFDRIRQDLVNKK 410
           +   +H       ++ +D+++ +
Sbjct: 488 SGYGLHGQGAEALKLYKDMLDAR 510


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 149/461 (32%), Positives = 249/461 (54%), Gaps = 13/461 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACS-LAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK 59
           +L  PS   H T   ALK+ S L HP +   ++HA  ++     +  +  SLL  Y    
Sbjct: 543 LLPNPS---HLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCG 599

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAI----DMFCGIDVKPNANTLVSVL 115
            +  A ++F+ +  P  V WT +I+     G  +EA+    + F    ++P++ T V VL
Sbjct: 600 LLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFAN-GMRPDSFTAVRVL 658

Query: 116 SACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVV 175
           +AC+ +     G+ +   + +     ++ +  A +D Y++CG +A    +F KM  ++ V
Sbjct: 659 TACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAV 718

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           +W  M+GGYA  G  +EA+ +F  M+  +  +P+   +   LSAC+ + AL  G+     
Sbjct: 719 AWGAMVGGYASNGHPREALDLFLAMQ-AEGMKPDCYAVAGALSACTRLGALDLGRQAIRM 777

Query: 236 ISTRYDLSVSNLV-GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
           +   +D  + N V G A+I+MY KCG    A  VF  +  KD I W+ +I GL M G  +
Sbjct: 778 VD--WDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEK 835

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
            A  L   M  + V  +D TFI L+ +C+H GL+  G   F  M+ +Y I P+++HY C+
Sbjct: 836 IAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCM 895

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414
           VD+  RAGLL+EA   + +MP+ A   + GALL  C+IHRN E+ + + + L+  +  + 
Sbjct: 896 VDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNS 955

Query: 415 GTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
           G + ++SN ++   RWED  K+R +++  G++K   CSW+E
Sbjct: 956 GNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVE 996


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 145/441 (32%), Positives = 258/441 (58%), Gaps = 9/441 (2%)

Query: 29  ALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           AL++H  +++ G   D F+   L++ +  +  + +A ++F+      +  W  +   L+ 
Sbjct: 88  ALDVHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALAL 147

Query: 89  CGFHKEAIDMFCGID---VKPNANTLVSVLSACSS---LVSH-KLGKAIHAHSLRNLNEN 141
            G   + ++++  ++   V  +  T   +L AC +   LVS  + GK IHAH LR+    
Sbjct: 148 AGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGA 207

Query: 142 NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME 201
           ++ +   ++D Y R G ++    +F +MP +NVVSW+ MI  YA+ G   EA+ +F+EM 
Sbjct: 208 HVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMM 267

Query: 202 -KTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCG 260
             T ++ PN  T+V+VL AC++ +AL  GK +H+YI  R   S+  ++ +A+I MY +CG
Sbjct: 268 LNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVI-SALITMYARCG 326

Query: 261 DVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALIS 320
            +     +F+ +  KD + W+++IS   ++G GR+A+++F  MI +   P  ++FI+++ 
Sbjct: 327 KLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLG 386

Query: 321 ACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 380
           ACSH GLV++G  LF++M   + I P ++HYAC+VD+ GRA  L+EA   I ++ IE   
Sbjct: 387 ACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGP 446

Query: 381 SVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEI 440
            VWG+LL ACRIH + E+ +R  + L   +  + G + L+++ +A A+ W++  +++  +
Sbjct: 447 KVWGSLLGACRIHCHVELAERASKRLFKLEPTNAGNYVLLADIYAEAEMWDEVKRVKKLL 506

Query: 441 RRMGLKKKTGCSWIEVNPSIF 461
               L+K  G SWIEV   I+
Sbjct: 507 DSRELQKVPGRSWIEVRRKIY 527


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 155/490 (31%), Positives = 256/490 (52%), Gaps = 44/490 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + ++F   LKA S      + LEIH    + G   D F+Q  L+  Y     I  A  +F
Sbjct: 121 DRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMF 180

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           + +   DVV+W+ +I G  + G   +A+ +F  +   +V+P+   L +VLSAC    +  
Sbjct: 181 DKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLS 240

Query: 126 LGKAIHAHSLRNLNENNIILD----NAILDFYIRCGSLASCGYLFVKMPKRNVVS----- 176
            GK IH   +    ENNI++D    +A++  Y  CGS+     LF KM  +N+V+     
Sbjct: 241 YGKMIHDFIM----ENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMV 296

Query: 177 --------------------------WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNE 210
                                     W+ MI GYAE    +EA+++F EM+     +P++
Sbjct: 297 TGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLG-IKPDQ 355

Query: 211 ATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN 270
            T+++V++AC+ + AL   K++H ++  +     +  + NA+I MY KCG +  A ++F+
Sbjct: 356 VTMLSVITACAHLGALDQAKWIHLFVD-KNGFGGALPINNALIEMYAKCGSLERARRIFD 414

Query: 271 MLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQ 330
            +  K+ ISW+ +IS  AM+G    AL+ F  M    + P+ +TF+ ++ ACSH GLV++
Sbjct: 415 KMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEE 474

Query: 331 GLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 390
           G  +F +M   + I P+  HY C+VD++GRA LL EA   +  MP+     +WG+L+ AC
Sbjct: 475 GRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAAC 534

Query: 391 RIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTG 450
           R+H   E+ +   + L+       G    +SN +A A RWED  ++R  ++  G+ K+ G
Sbjct: 535 RVHGEIELGEFAAKRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERG 594

Query: 451 CSWIEVNPSI 460
           CS  E+N  I
Sbjct: 595 CSRFELNNEI 604



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 154/344 (44%), Gaps = 21/344 (6%)

Query: 109 NTLVSVLSACSSLVSHKLGKAIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYLFV 167
           +TL S LS+ +SL   K    +HA  LR+ L+ +  +L   ++       SL     +F 
Sbjct: 24  HTLFSALSSATSLTHLK---QVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFN 80

Query: 168 KMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 227
            +PK         +   +     ++ + V++ M +T+    +  +   +L A S + +L 
Sbjct: 81  LIPKPETHLCNRFLRELSRSEEPEKTLLVYERM-RTQGLAVDRFSFPPLLKALSRVKSLV 139

Query: 228 FGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGL 287
            G  +H  ++ +        V   ++ MY  CG +  A  +F+ + ++D ++WS +I G 
Sbjct: 140 EGLEIHG-LAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGY 198

Query: 288 AMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFK-AMSTVYEIVP 346
             +G    AL LF  M    V PD++    ++SAC   G +  G ++    M     + P
Sbjct: 199 CQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDP 258

Query: 347 QMQHYACVVDMYGRAGLLEEAEAFIREMP---IEAEWSVWGALLNACRIHRNDEMFDR-I 402
            +Q  + +V MY   G ++ A     +M    + A  ++        +I     +F++ +
Sbjct: 259 HLQ--SALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMV 316

Query: 403 RQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446
           ++DLV         ++ M + +A +D  ++   + +E++ +G+K
Sbjct: 317 KKDLV--------CWSAMISGYAESDSPQEALNLFNEMQSLGIK 352


>gi|357474955|ref|XP_003607763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508818|gb|AES89960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 871

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 152/459 (33%), Positives = 257/459 (55%), Gaps = 13/459 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +T    + AC+      +   +H +VI+ G   + ++  SLL+ YV   DI  A  +F
Sbjct: 234 NVFTVGSLVTACTKLGCLHQGKWVHGYVIKNGIEINSYLATSLLNMYVKCGDIGDARSVF 293

Query: 69  NSVVFP------DVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACS 119
           +           D+V WT +I G ++ G+ + A+++F       + PN+ TL S+LSAC+
Sbjct: 294 DEFSVSTCGGGDDLVFWTAMIVGYTQRGYPQAALELFTDKKWYRILPNSVTLASLLSACA 353

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
            L +  +GK +H   ++    ++  L N+++D Y +CG +    Y+F     ++VVSW +
Sbjct: 354 QLENIVMGKLLHVLVVK-YGLDDTSLRNSLVDMYAKCGLIPDAHYVFATTVDKDVVSWNS 412

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           +I GYA+ G   EA+ +F  M + +   P+  T+V VLSAC+S+ A   G  +H + + +
Sbjct: 413 VISGYAQSGSAYEALDLFNRM-RMESFLPDAVTVVGVLSACASVGAHQIGLSLHGF-ALK 470

Query: 240 YDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQ 298
           Y L  S++ VG A++N Y KCGD   A  VF+ +  K+ ++W+ +I G  M G G  +L 
Sbjct: 471 YGLVSSSIYVGTALLNFYAKCGDATSARMVFDGMGEKNAVTWAAMIGGCGMQGDGVGSLA 530

Query: 299 LFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMY 358
           LF  M+   + P++V F  L++ACSH G+V++GL++F  M      VP M+HYAC+VD+ 
Sbjct: 531 LFRDMLKEELVPNEVVFTTLLAACSHSGMVEEGLMIFDFMCKELNFVPSMKHYACMVDLL 590

Query: 359 GRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFA 418
            RAG L+EA  FI +MP++    V+GA L+ C +H N +  +   + ++         + 
Sbjct: 591 ARAGNLQEALDFIDKMPVQPGVGVFGAFLHGCGLHSNFDFGEVAIRRMLELHPDQACYYV 650

Query: 419 LMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           L+SN +A   RW    ++R+ I++ GL K  G S +E++
Sbjct: 651 LISNLYASDGRWGMVKEVREMIKQRGLNKVPGVSLVEMD 689



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 191/397 (48%), Gaps = 24/397 (6%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           +HA +I  GH  D     +L+  Y +   +  A  +F+ +  P   S+  II        
Sbjct: 59  LHASLIISGHPPD----TTLISLYASFGFLRHARTLFHRLPSPTHHSFKLIIRWHFLNDV 114

Query: 92  HKEAIDMF-CGIDVKPNANTLVS---VLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
           H   +  +        + N LV    +L   S L    L   +H + L++   ++ +L  
Sbjct: 115 HSHVVSFYNLARTTLGSFNDLVVFSILLKTASQLRDIVLTTKLHCNILKSNAADSFVL-T 173

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           +++D Y +CG L     +F ++P R+VVSWT+MI  Y +    +E + +F  M +    +
Sbjct: 174 SLVDAYSKCGKLRDARKVFDEIPDRSVVSWTSMIVAYVQNECAEEGLMLFNRM-REGFLD 232

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
            N  T+ ++++AC+ +  L  GK+VH Y+  +  + +++ +  +++NMYVKCGD+G A  
Sbjct: 233 GNVFTVGSLVTACTKLGCLHQGKWVHGYV-IKNGIEINSYLATSLLNMYVKCGDIGDARS 291

Query: 268 VFNMLAYK------DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISA 321
           VF+  +        D + W+ +I G    G  + AL+LF+      + P+ VT  +L+SA
Sbjct: 292 VFDEFSVSTCGGGDDLVFWTAMIVGYTQRGYPQAALELFTDKKWYRILPNSVTLASLLSA 351

Query: 322 CSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 381
           C+    +  G +L   +  V   +        +VDMY + GL+ +A  ++    ++ +  
Sbjct: 352 CAQLENIVMGKLLH--VLVVKYGLDDTSLRNSLVDMYAKCGLIPDAH-YVFATTVDKDVV 408

Query: 382 VWGALLN----ACRIHRNDEMFDRIRQDLVNKKGVSV 414
            W ++++    +   +   ++F+R+R +      V+V
Sbjct: 409 SWNSVISGYAQSGSAYEALDLFNRMRMESFLPDAVTV 445


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 161/469 (34%), Positives = 256/469 (54%), Gaps = 27/469 (5%)

Query: 9   NHYTFTQA----LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSL-LHFYVTVKDIFS 63
           NH    Q     L+AC+      K  ++H H+I+ G     F  N L L  + +      
Sbjct: 2   NHRAVEQPCLDILQACNTL---PKLAQLHTHIIKLG-----FQNNPLVLTKFTSASSNLD 53

Query: 64  AHQIFNSVVFP-------DVVSWTTIISGLSKCGFHKE-AI---DMFCGIDVKPNANTLV 112
           A     S+VF        D   ++TII   ++    K  AI   ++  G  + PN     
Sbjct: 54  AIPYAMSLVFSVEDARVYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFP 113

Query: 113 SVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRC-GSLASCGYLFVKMPK 171
            VL AC+ L    LGKA+H   ++   +++I + N ++  Y  C G +     LF +MPK
Sbjct: 114 FVLKACAGLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPK 173

Query: 172 RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKY 231
            + V+WT MIGGYA  G    AV +F++M+      P++ T+V+VLSAC+ + AL  GK+
Sbjct: 174 LDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVC-PDDVTMVSVLSACTDLGALELGKW 232

Query: 232 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNG 291
           + SYI     L    L  NA+++M+ KCGDV  A+ +F  ++ +  +SW++VI GLAM+G
Sbjct: 233 IESYIEKERVLKTVEL-SNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHG 291

Query: 292 CGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY 351
            G +A+ LF  M  + + P+D+ FI L+SACSH GLV++G   F  M+  + IVP+++HY
Sbjct: 292 RGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHY 351

Query: 352 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKG 411
            C+VD+  RAGL+ EA  F+  MPIE    +W  L++ACR+H   ++ + I + L+  + 
Sbjct: 352 GCMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRVHGELKLGESISKQLIRNEP 411

Query: 412 VSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +    + L+SN +     WE  +KIR  + + G++K  G + IE++  I
Sbjct: 412 MHESNYVLLSNIYGKMLDWEKKSKIRVAMGKKGIQKVPGSTMIELDNEI 460



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 152/296 (51%), Gaps = 6/296 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    S N Y F   LKAC+          +H  ++++G   DIF+QN+++H Y     
Sbjct: 100 MLGYGISPNKYAFPFVLKACAGLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSG 159

Query: 61  IFS-AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLS 116
               A ++F+ +   D V+WT +I G ++ G    A+ +F  + +    P+  T+VSVLS
Sbjct: 160 GMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLS 219

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
           AC+ L + +LGK I ++  +      + L NA++D + +CG +     LF  M KR +VS
Sbjct: 220 ACTDLGALELGKWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVS 279

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           WT++I G A  G   EAVS+F+EM K     P +   + +LSACS    +  G+   S +
Sbjct: 280 WTSVIVGLAMHGRGLEAVSLFEEM-KASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEM 338

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDKISWSTVISGLAMNG 291
           + ++ +         ++++  + G V  A++ V  M    + I W T+IS   ++G
Sbjct: 339 TRQFGIVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRVHG 394


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 147/457 (32%), Positives = 250/457 (54%), Gaps = 12/457 (2%)

Query: 12   TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
            +F   +K+CS           H     +G   D+F+ ++L+  Y     +  A  +F+ +
Sbjct: 1144 SFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEI 1203

Query: 72   VFPDVVSWTTIISGLSKC-----------GFHKEAIDMFCGIDVKPNANTLVSVLSACSS 120
               +VVSWT++I+G  +             F +E  ++  G +V  ++  +VSVLSACS 
Sbjct: 1204 PLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSR 1263

Query: 121  LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
            +    + + +H   ++   + +I + N ++D Y +CG       +F  M +++ +SW +M
Sbjct: 1264 VSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSM 1323

Query: 181  IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
            I  YA+ G   EA+ VF  M +      N  TL  VL AC+   AL  GK +H  +  + 
Sbjct: 1324 IAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQV-IKM 1382

Query: 241  DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
            DL  +  VG ++I+MY KCG V +A + F+ +  K+  SW+ +++G  M+G  ++AL +F
Sbjct: 1383 DLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIF 1442

Query: 301  SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
              M+   V P+ +TF+++++ACSH GLV++G   F AM   Y+I P ++HY C+VD++GR
Sbjct: 1443 YKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGR 1502

Query: 361  AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
            AG L EA   I+ M ++ ++ VWG+LL ACRIH+N ++ +   Q L      + G + L+
Sbjct: 1503 AGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLL 1562

Query: 421  SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            SN +A A RW D  ++R  ++   L K  G S +E+ 
Sbjct: 1563 SNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELK 1599



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 117/379 (30%), Positives = 195/379 (51%), Gaps = 38/379 (10%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           +IHA +I  G  +D  +   L+H Y T   I  A  +F  +  P   +W  II   +  G
Sbjct: 45  QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTING 104

Query: 91  FHKEAI----DMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
             ++A+    +M C   +  +  T   V+ AC++ +S  LGK +H   ++     ++ + 
Sbjct: 105 LSEQALMLYKNMVCQ-GIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQ 163

Query: 147 NAILDFYIRCG-------------------------SLASCGYL------FVKMPKRNVV 175
           N ++DFY +CG                          L SCG L      F ++P +NVV
Sbjct: 164 NNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVV 223

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           SWT MI GY      +EA+ +F+ M+  +   PNE T+V+++ AC+ +  L+ G+ +H Y
Sbjct: 224 SWTAMINGYIRNQQPEEALELFKRMQ-AENIFPNEYTMVSLIKACTEMGILTLGRGIHDY 282

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
            + +  + +   +G A+I+MY KCG +  AI+VF  +  K   +W+++I+ L ++G G++
Sbjct: 283 -AIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQE 341

Query: 296 ALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVV 355
           AL LFS M    V PD +TFI ++ AC H   V +G   F  M+  Y I P  +HY C+ 
Sbjct: 342 ALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMT 401

Query: 356 DMYGRAGLLEEAEAFIREM 374
           ++Y R+  L+EA    +E+
Sbjct: 402 ELYARSNNLDEAFKSTKEV 420



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 178/343 (51%), Gaps = 25/343 (7%)

Query: 75   DVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIH 131
            +V SW ++I+ L++ G   EA+  F  +    + P  ++    + +CS+L     G+  H
Sbjct: 1106 NVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSH 1165

Query: 132  AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
              +     E ++ + +A++D Y +CG L     LF ++P RNVVSWT+MI GY +     
Sbjct: 1166 QQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQAD 1225

Query: 192  EAVSVFQE-MEKTKEAEP------NEATLVNVLSACSSISALSFGKYVHSYISTR-YDLS 243
             A+ +F++ +E+  E E       +   +V+VLSACS +S     + VH ++  + +D S
Sbjct: 1226 NALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGS 1285

Query: 244  VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
            +   VGN +++ Y KCG   ++ +VF+ +  KD ISW+++I+  A +G   +AL++F  M
Sbjct: 1286 IG--VGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGM 1343

Query: 304  IIN-AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV----VDMY 358
            + +  V  + VT  A++ AC+H G +  G  +   +     I   +++  CV    +DMY
Sbjct: 1344 VRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQV-----IKMDLEYNVCVGTSIIDMY 1398

Query: 359  GRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFD 400
             + G +E A+     M  E     W A++    +H R  E  D
Sbjct: 1399 CKCGRVEMAKKTFDRMK-EKNVKSWTAMVAGYGMHGRAKEALD 1440



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 137/298 (45%), Gaps = 37/298 (12%)

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           + IHA  +R+   N+ +L   ++  Y   G +A    LF ++      +W  +I      
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G  ++A+ +++ M   +    ++ T   V+ AC++  ++  GK VH  +  +Y  S    
Sbjct: 104 GLSEQALMLYKNM-VCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSL-IKYGFSGDVF 161

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGL-------------------- 287
           V N +I+ Y KCG    A++VF  +  ++ +SW+TVISGL                    
Sbjct: 162 VQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKN 221

Query: 288 ------AMNGCGR-----QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFK 336
                  +NG  R     +AL+LF  M    +FP++ T ++LI AC+  G++  G  +  
Sbjct: 222 VVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHD 281

Query: 337 -AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
            A+    EI   +     ++DMY + G +++A      MP ++    W +++ +  +H
Sbjct: 282 YAIKNCIEIGVYLG--TALIDMYSKCGSIKDAIEVFETMPRKS-LPTWNSMITSLGVH 336



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 86/185 (46%), Gaps = 13/185 (7%)

Query: 8    YNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
            YN  T +  L AC+ A   +    IH  VI+    +++ +  S++  Y     +  A + 
Sbjct: 1351 YNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKT 1410

Query: 68   FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS--SLV 122
            F+ +   +V SWT +++G    G  KEA+D+F  +    VKPN  T VSVL+ACS   LV
Sbjct: 1411 FDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLV 1470

Query: 123  S---HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWT 178
                H      H + +    E  I     ++D + R G L     L  +M  K + V W 
Sbjct: 1471 EEGWHWFNAMKHKYDI----EPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWG 1526

Query: 179  TMIGG 183
            +++G 
Sbjct: 1527 SLLGA 1531


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 151/456 (33%), Positives = 256/456 (56%), Gaps = 7/456 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YT+   LK C      +   +IH+ +I+     + ++ + L+  Y  +  + +A  I 
Sbjct: 472 NQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDIL 531

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
                 DVVSWTT+I+G ++  F  +A+  F  +    ++ +   L + +SAC+ L + K
Sbjct: 532 IRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALK 591

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ IHA +  +   +++   NA++  Y +CG++      F +    + ++W  ++ G+ 
Sbjct: 592 EGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQ 651

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS-TRYDLSV 244
           + G  +EA+ VF  M + +  + N  T  + + A S  + +  GK VH+ I+ T YD   
Sbjct: 652 QSGNNEEALRVFARMNR-EGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSET 710

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
              V NA+I+MY KCG +  A + F  L+ K+++SW+ +I+  + +G G +AL  F  MI
Sbjct: 711 E--VCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMI 768

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
            + V P+ VT + ++SACSH GLVD+G+  F++M+T Y + P+ +HY CVVDM  RAGLL
Sbjct: 769 HSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLL 828

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
             A+ FI EMPIE +  VW  LL+AC +H+N E+ +     L+  +     T+ L+SN +
Sbjct: 829 SRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLY 888

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           A   +W+  +  R +++  G+KK+ G SWIEV  SI
Sbjct: 889 AVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSI 924



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 111/422 (26%), Positives = 213/422 (50%), Gaps = 10/422 (2%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           Y F+  L AC      +   ++H  V++ G   D ++ N+L+  Y  +  + SA  IF++
Sbjct: 272 YAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSN 331

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLG 127
           +   D V++ T+I+GLS+CG+ ++A+++F  +    ++P++NTL S++ ACSS  +   G
Sbjct: 332 MSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSG 391

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           + +HA++ +    +N  ++ A+L+ Y +C  + +    F++    NVV W  M+  Y   
Sbjct: 392 QQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLL 451

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
              + +  +F++M+  +E  PN+ T  ++L  C  +  L  G+ +HS I  +    ++  
Sbjct: 452 DDLRNSFRIFRQMQ-IEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQI-IKTSFQLNAY 509

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V + +I+MY K G +  A  +    A KD +SW+T+I+G        +AL  F  M+   
Sbjct: 510 VCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRG 569

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           +  D+V     +SAC+    + +G  +  A + V      +     +V +Y + G +EEA
Sbjct: 570 IRSDEVGLTNAVSACAGLQALKEGQQI-HAQACVSGFSSDLPFQNALVTLYSKCGNIEEA 628

Query: 368 E-AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAG 426
             AF  E     +   W AL++  +   N+E   R+   + N++G+    F   S   A 
Sbjct: 629 YLAF--EQTEAGDNIAWNALVSGFQQSGNNEEALRVFARM-NREGIDSNNFTFGSAVKAA 685

Query: 427 AD 428
           ++
Sbjct: 686 SE 687



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 101/365 (27%), Positives = 187/365 (51%), Gaps = 11/365 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALE-IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           N  TF+  L+AC         +E IHA +I  G      + N L+  Y     +  A ++
Sbjct: 168 NEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRV 227

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLVSH 124
           F+ +   D  SW  +ISGLSK     EAI +FC    + + P      SVLSAC  + S 
Sbjct: 228 FDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESL 287

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           ++G+ +H   L+    ++  + NA++  Y   GSL S  ++F  M +R+ V++ T+I G 
Sbjct: 288 EIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGL 347

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           ++ G+ ++A+ +F+ M+     EP+  TL +++ ACSS   L  G+ +H+Y +T+   + 
Sbjct: 348 SQCGYGEKAMELFKRMQ-LDGLEPDSNTLASLVVACSSDGTLFSGQQLHAY-TTKLGFAS 405

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           ++ +  A++N+Y KC D+  A+  F     ++ + W+ ++    +    R + ++F  M 
Sbjct: 406 NDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQ 465

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC--VVDMYGRAG 362
           I  + P+  T+ +++  C   G ++ G    +  S + +   Q+  Y C  ++DMY + G
Sbjct: 466 IEEIVPNQYTYPSILKTCIRLGDLELGE---QIHSQIIKTSFQLNAYVCSVLIDMYAKLG 522

Query: 363 LLEEA 367
            L+ A
Sbjct: 523 KLDTA 527



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 186/386 (48%), Gaps = 9/386 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    + ACS         ++HA+  + G   +  I+ +LL+ Y    DI +A   F   
Sbjct: 374 TLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLET 433

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGK 128
              +VV W  ++         + +  +F  + ++   PN  T  S+L  C  L   +LG+
Sbjct: 434 EVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGE 493

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IH+  ++   + N  + + ++D Y + G L +   + ++   ++VVSWTTMI GY +  
Sbjct: 494 QIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYN 553

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
           F  +A++ F++M   +    +E  L N +SAC+ + AL  G+ +H+        S     
Sbjct: 554 FDDKALTTFRQM-LDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS-GFSSDLPF 611

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            NA++ +Y KCG++  A   F      D I+W+ ++SG   +G   +AL++F+ M    +
Sbjct: 612 QNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGI 671

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMS-TVYEIVPQMQHYACVVDMYGRAGLLEEA 367
             ++ TF + + A S    + QG  +   ++ T Y+   + +    ++ MY + G + +A
Sbjct: 672 DSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYD--SETEVCNAIISMYAKCGSISDA 729

Query: 368 EAFIREMPIEAEWSVWGALLNACRIH 393
           +    E+ ++ E S W A++NA   H
Sbjct: 730 KKQFLELSMKNEVS-WNAMINAYSKH 754



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/392 (24%), Positives = 185/392 (47%), Gaps = 9/392 (2%)

Query: 3   SCPSSYNHYTFTQALKACSLAHPH-QKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDI 61
           +C    NH T    L+ C   +    +  ++H+ +++ G  ++  +   LL FY+   D+
Sbjct: 60  NCGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDL 119

Query: 62  FSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSAC 118
             A ++F+ +    + +W  +I  L+      +   +F  +   +V PN  T   VL AC
Sbjct: 120 DGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEAC 179

Query: 119 -SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
               V+  + + IHA  +      + I+ N ++D Y R G +     +F  +  ++  SW
Sbjct: 180 RGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSW 239

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
             MI G ++     EA+ +F +M       P      +VLSAC  I +L  G+ +H  + 
Sbjct: 240 VAMISGLSKNECEVEAIRLFCDM-YVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLV- 297

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            +   S    V NA++++Y   G +  A  +F+ ++ +D ++++T+I+GL+  G G +A+
Sbjct: 298 LKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAM 357

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
           +LF  M ++ + PD  T  +L+ ACS  G +  G  L  A +T        +    ++++
Sbjct: 358 ELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQL-HAYTTKLGFASNDKIEGALLNL 416

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           Y +   +E A  +  E  +E    +W  +L A
Sbjct: 417 YAKCSDIETALNYFLETEVE-NVVLWNVMLVA 447



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 172/392 (43%), Gaps = 32/392 (8%)

Query: 91  FHKEAIDMFCGIDVKPNANTLVSVLSAC-SSLVSHKLGKAIHAHSLRNLNENNIILDNAI 149
           F +  ID      ++PN  TL  +L  C  +  S   G+ +H+  L+   +NN  L   +
Sbjct: 50  FQENGIDSVENCGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKL 109

Query: 150 LDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN 209
           LDFY+  G L     +F +MP+R + +W  MI   A R    +   +F  M   +   PN
Sbjct: 110 LDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRM-VNENVTPN 168

Query: 210 EATLVNVLSACSSIS-ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           E T   VL AC   S A    + +H+ I  +  L  S +V N +I++Y + G V  A +V
Sbjct: 169 EGTFSGVLEACRGGSVAFDVVEQIHARIIYQ-GLGKSTIVCNPLIDLYSRNGFVDRARRV 227

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS----- 323
           F+ L  KD  SW  +ISGL+ N C  +A++LF  M +  + P    F +++SAC      
Sbjct: 228 FDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESL 287

Query: 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEWS 381
             G    GL+L    S+          Y C  +V +Y   G L  AE     M  + +  
Sbjct: 288 EIGEQLHGLVLKLGFSS--------DTYVCNALVSLYFHLGSLISAEHIFSNMS-QRDAV 338

Query: 382 VWGALLNACRI----HRNDEMFDRIRQDLVNKKGVSVGTFALMSNT----FAGADRWEDT 433
            +  L+N         +  E+F R++ D +     ++ +  +  ++    F+G      T
Sbjct: 339 TYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYT 398

Query: 434 NKI----RDEIRRMGLKKKTGCSWIEVNPSIF 461
            K+     D+I    L     CS IE   + F
Sbjct: 399 TKLGFASNDKIEGALLNLYAKCSDIETALNYF 430


>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
          Length = 751

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 147/456 (32%), Positives = 253/456 (55%), Gaps = 13/456 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +TF+   K+C+L     +  EIH+HV+  G   D++   +L+  Y     +  A ++F
Sbjct: 261 DSFTFSVLAKSCALNMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLF 320

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNA--NTLVSVLSACSSLVSHKL 126
           + ++    VSWT +I G  + G    A  +F  +  K +A  NT++            KL
Sbjct: 321 DEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQMIEKDSAAFNTMIDAYV--------KL 372

Query: 127 GKAIHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           G    A  L   + E +++    ++  Y   G+L S   LF  MP++N+ SW  MI GY 
Sbjct: 373 GDMCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYX 432

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +     EA+ +F EM+ T   EP+E T+V+VL A + + AL  G +VH ++  R  L  +
Sbjct: 433 QNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVR-RKKLDRA 491

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             VG A+I+MY KCG++  +  VF+ +  K+  SW+ +I+  A+NG  ++AL LF  M  
Sbjct: 492 TNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNH 551

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
               P+++T I ++SAC+H GLV++G   FKAM   + + P+++HY C+VD+ GRAG L+
Sbjct: 552 KGFMPNEITMIGVLSACNHSGLVEEGKRWFKAMEE-FGLTPKIEHYGCMVDLLGRAGCLQ 610

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EAE  +  MP EA   +  + L AC   ++    +R+ ++ +  +  + G + ++ N +A
Sbjct: 611 EAEKLMESMPYEANGIILSSFLFACGYSKDVARAERVLKEAIKMEAWNDGNYIMLRNLYA 670

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
              RW++ ++++  +RR G+KK+ GCS IEV+  ++
Sbjct: 671 NEKRWKEADEVKGLMRRNGVKKEAGCSAIEVDSRVW 706



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 119/292 (40%), Gaps = 36/292 (12%)

Query: 118 CSSLVSHKLGKA----IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKM---- 169
           C SL+     +A    IHA  LRN  E N    N    F   C S+A    L+  +    
Sbjct: 155 CLSLLQQSKTRANLLQIHAFMLRNALETN---PNLFTKFIATCSSIALLAPLYDPLAGIV 211

Query: 170 ---------PKRN-VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
                    P R+      +MI  Y       E+ ++++++ +     P+  T   +  +
Sbjct: 212 HARRMFDHRPHRDDAFLCNSMIKAYVGMRQYSESFALYRDLRRNTSFTPDSFTFSVLAKS 271

Query: 220 CSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS 279
           C+   A+  G+ +HS++       +      A+++MY K G +  A ++F+ +  + ++S
Sbjct: 272 CALNMAIWEGQEIHSHVVA-VGFCLDLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVS 330

Query: 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMS 339
           W+ +I G   +G    A +LF  MI      D   F  +I A    G +     LF  M 
Sbjct: 331 WTALIGGYVRSGDMDNAGKLFDQMIEK----DSAAFNTMIDAYVKLGDMCSARKLFDEM- 385

Query: 340 TVYEIVPQMQHYACVVDMYGRA--GLLEEAEAFIREMPIEAEWSVWGALLNA 389
                 P+    +  + +YG +  G L+ A +    MP E     W A+++ 
Sbjct: 386 ------PERSVVSWTIMIYGYSSNGNLDSARSLFDAMP-EKNLFSWNAMISG 430


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 145/450 (32%), Positives = 256/450 (56%), Gaps = 6/450 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           TF+  L + S     +   +IH +++ +    DIF+ ++L+  Y   + +  A  IF+  
Sbjct: 342 TFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQC 401

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGK 128
              DVV +T +ISG    G + ++++MF     + + PN  TLVS+L     L++ KLG+
Sbjct: 402 NSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGR 461

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H   ++   +N   +  A++D Y +CG +     +F ++ KR++VSW +MI   A+  
Sbjct: 462 ELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSD 521

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
               A+ +F++M  +     +  ++   LSAC+++ + SFGK +H ++  ++ L+     
Sbjct: 522 NPSAAIDIFRQMGVSGICY-DCVSISAALSACANLPSESFGKAIHGFM-IKHSLASDVYS 579

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI-INA 307
            + +I+MY KCG++  A+ VF  +  K+ +SW+++I+    +G  + +L LF  M+  + 
Sbjct: 580 ESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSG 639

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           + PD +TF+ +IS+C H G VD+G+  F++M+  Y I PQ +HYACVVD++GRAG L EA
Sbjct: 640 IRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEA 699

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
              ++ MP   +  VWG LL ACR+H+N E+ +     L++    + G + L+SN  A A
Sbjct: 700 YETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANA 759

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
             WE   K+R  ++   ++K  G SWIE+N
Sbjct: 760 REWESVTKVRSLMKEREVQKIPGYSWIEIN 789



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 202/415 (48%), Gaps = 19/415 (4%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S N  TF   L  C+        +++H  V+  G   +  I+NSLL  Y        A +
Sbjct: 236 SPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASK 295

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVS 123
           +F  +   D V+W  +ISG  + G  +E++  F  +    V P+A T  S+L + S   +
Sbjct: 296 LFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFEN 355

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            +  K IH + +R+    +I L +A++D Y +C  ++    +F +    +VV +T MI G
Sbjct: 356 LEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISG 415

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           Y   G   +++ +F+ + K K   PNE TLV++L     + AL  G+ +H +I  +   +
Sbjct: 416 YLHNGLYIDSLEMFRWLVKVK-ISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDN 474

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
             N +G AVI+MY KCG + +A ++F  L+ +D +SW+++I+  A +     A+ +F  M
Sbjct: 475 RCN-IGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQM 533

Query: 304 IINAVFPDDVTFIALISAC------SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
            ++ +  D V+  A +SAC      S G  +   +I     S VY         + ++DM
Sbjct: 534 GVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYS-------ESTLIDM 586

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           Y + G L+ A    + M  E     W +++ AC  H   +    +  ++V K G+
Sbjct: 587 YAKCGNLKAAMNVFKTMK-EKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGI 640



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 149/314 (47%), Gaps = 11/314 (3%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--P 74
           L+ACS  +  ++  ++HA +I      D +    +L  Y          ++F  +     
Sbjct: 42  LQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRS 101

Query: 75  DVVSWTTIISGLSKCGFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAI 130
            +  W +IIS   + G   +A+     M C   V P+ +T   ++ AC +L + K G   
Sbjct: 102 SIRPWNSIISSFVRNGLLNQALAFYFKMLC-FGVSPDVSTFPCLVKACVALKNFK-GIDF 159

Query: 131 HAHSLRNLNEN-NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
            + ++ +L  + N  + ++++  Y+  G +     LF ++ +++ V W  M+ GYA+ G 
Sbjct: 160 LSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGA 219

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
               +  F  M +  +  PN  T   VLS C+S   +  G  +H  +     +     + 
Sbjct: 220 LDSVIKGFSVM-RMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVS-GVDFEGSIK 277

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
           N++++MY KCG    A ++F M++  D ++W+ +ISG   +G   ++L  F  MI + V 
Sbjct: 278 NSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVL 337

Query: 310 PDDVTFIALISACS 323
           PD +TF +L+ + S
Sbjct: 338 PDAITFSSLLPSVS 351



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 135/278 (48%), Gaps = 6/278 (2%)

Query: 114 VLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKR- 172
           +L ACS+    + GK +HA  + N    +   D  IL  Y  CGS + CG +F ++  R 
Sbjct: 41  LLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRR 100

Query: 173 -NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKY 231
            ++  W ++I  +   G   +A++ + +M       P+ +T   ++ AC ++       +
Sbjct: 101 SSIRPWNSIISSFVRNGLLNQALAFYFKM-LCFGVSPDVSTFPCLVKACVALKNFKGIDF 159

Query: 232 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNG 291
           +   +S+   +  +  V +++I  Y++ G + +  ++F+ +  KD + W+ +++G A  G
Sbjct: 160 LSDTVSS-LGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCG 218

Query: 292 CGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY 351
                ++ FS+M ++ + P+ VTF  ++S C+   L+D G+ L   +  V  +  +    
Sbjct: 219 ALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQL-HGLVVVSGVDFEGSIK 277

Query: 352 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
             ++ MY + G  ++A    R M   A+   W  +++ 
Sbjct: 278 NSLLSMYSKCGRFDDASKLFRMMS-RADTVTWNCMISG 314


>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 532

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 163/464 (35%), Positives = 256/464 (55%), Gaps = 36/464 (7%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVK--DIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           ++H+H+I      D F    ++  +      DI  A+++F S+       W TII    +
Sbjct: 28  QMHSHLIVSASRLDPFAAGKIISLFAVSSNADISHAYKLFLSLPHRTTFIWNTIIRIFVE 87

Query: 89  CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS-----LVSH----KLG--------- 127
              +  A+ ++  +      PN  T   VL AC+      L SH    KLG         
Sbjct: 88  KNENATALSLYKNMLQTGFLPNNYTFSFVLRACTDNSPVGLASHAQVIKLGWESYDFVLN 147

Query: 128 KAIHAHS-------LRNLNE----NNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
             IH ++        R L +     ++I   A+++ Y++ G +     LF +MP+RN VS
Sbjct: 148 GLIHLYANWSSVEAARKLFDVSTCRDVITWTALINGYVKSGHVEFARELFDQMPERNEVS 207

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           W+ MI GY   G  +EA+ +F +++ T    PN A +V  L+ACS + +L  G+++H+Y+
Sbjct: 208 WSAMITGYVHMGMFREALELFNDLQLTG-LRPNHAGIVGALTACSYLGSLDHGRWIHAYV 266

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
             R    +  ++G A+++MY KCG + IA  VF  +  KD  +++++ISGLA +G    A
Sbjct: 267 D-RNGTELDRVLGTALVDMYAKCGCIEIACSVFEKMPDKDAFAFTSLISGLANHGQSADA 325

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
           +QLF  M    V P++VTFI ++SACS  GLVD+GL +F  MS VY I P +QHY C+VD
Sbjct: 326 IQLFGRMQSEKVIPNEVTFICVLSACSRMGLVDEGLRIFNCMSVVYGIEPGVQHYGCMVD 385

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGT 416
           + GRAGLLEEA+  +REMP+E +  V GALLN+CR+H + E+     + LV +     G 
Sbjct: 386 LLGRAGLLEEAKRLVREMPMEPDSYVLGALLNSCRVHGDVELGKETVESLVERGLDHGGV 445

Query: 417 FALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
             L+SN +A +++W+   K+R E+    +KK  GCS IE++ S+
Sbjct: 446 HVLLSNMYASSNQWDWVVKVRKEMGAKKVKKVPGCSSIEIDGSV 489



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 131/268 (48%), Gaps = 37/268 (13%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N+YTF+  L+AC+   P    L  HA VI+ G     F+ N L+H Y     + +A ++F
Sbjct: 109 NNYTFSFVLRACTDNSP--VGLASHAQVIKLGWESYDFVLNGLIHLYANWSSVEAARKLF 166

Query: 69  NSVVFPDVVSWTTIISGLSKC-------------------------------GFHKEAID 97
           +     DV++WT +I+G  K                                G  +EA++
Sbjct: 167 DVSTCRDVITWTALINGYVKSGHVEFARELFDQMPERNEVSWSAMITGYVHMGMFREALE 226

Query: 98  MFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
           +F  +    ++PN   +V  L+ACS L S   G+ IHA+  RN  E + +L  A++D Y 
Sbjct: 227 LFNDLQLTGLRPNHAGIVGALTACSYLGSLDHGRWIHAYVDRNGTELDRVLGTALVDMYA 286

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           +CG +     +F KMP ++  ++T++I G A  G   +A+ +F  M+  K   PNE T +
Sbjct: 287 KCGCIEIACSVFEKMPDKDAFAFTSLISGLANHGQSADAIQLFGRMQSEK-VIPNEVTFI 345

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDL 242
            VLSACS +  +  G  + + +S  Y +
Sbjct: 346 CVLSACSRMGLVDEGLRIFNCMSVVYGI 373


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 147/452 (32%), Positives = 258/452 (57%), Gaps = 5/452 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +T+   L+ C+ A       +IH   I+ G   D+++   L+  Y     +  A +I 
Sbjct: 344 NEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRIL 403

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   DVVSWT++I+G  +  F KEA++ F  +    + P+   L S +SAC+ + + +
Sbjct: 404 EVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMR 463

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ IH+    +    ++ + NA+++ Y RCG       LF  +  ++ ++W  M+ G+A
Sbjct: 464 QGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFA 523

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G  +EA+ VF +M +    + N  T V+ +SA ++++ +  GK +H+ +  +   +  
Sbjct: 524 QSGLYEEALEVFIKMYQAG-VKYNVFTFVSSISASANLADIKQGKQIHATV-IKTGCTSE 581

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V NA+I++Y KCG +  A   F  ++ ++ +SW+T+I+  + +G G +AL LF  M  
Sbjct: 582 TEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQ 641

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             + P+DVTFI +++ACSH GLV++GL  FK+MS+ + I P+  HYACVVD+ GRAG L+
Sbjct: 642 EGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLD 701

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
            A  F+ EMP+ A   VW  LL+ACR+H+N E+ +   + L+  +     ++ L+SN +A
Sbjct: 702 RARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAYA 761

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
              +W   + +R  ++  G++K+ G SWIEV 
Sbjct: 762 VTGKWACRDHVRKMMKDRGVRKEPGRSWIEVK 793



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 121/423 (28%), Positives = 217/423 (51%), Gaps = 20/423 (4%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L AC+      K  ++H+++++ G   D  I+ SLL  YV    I  A +IF S 
Sbjct: 246 TIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSG 305

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              +VV W  ++    +     ++ D+FC +    V+PN  T   +L  C+      LG+
Sbjct: 306 DRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGE 365

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IH  S++   E+++ +   ++D Y + G L     +   +  ++VVSWT+MI GY +  
Sbjct: 366 QIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHE 425

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS--YISTRYDLSVSN 246
           FCKEA+  F++M+      P+   L + +SAC+ I A+  G+ +HS  Y+S  Y   VS 
Sbjct: 426 FCKEALETFKDMQLFG-IWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSG-YSADVS- 482

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            + NA++N+Y +CG    A  +F  + +KDKI+W+ ++SG A +G   +AL++F  M   
Sbjct: 483 -IWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQA 541

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI--VPQMQHYACVVDMYGRAGLL 364
            V  +  TF++ ISA ++   + QG    +  +TV +     + +    ++ +YG+ G +
Sbjct: 542 GVKYNVFTFVSSISASANLADIKQGK---QIHATVIKTGCTSETEVANALISLYGKCGSI 598

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIH----RNDEMFDRIRQDLVNKKGVS-VGTFAL 419
           E+A+    EM  E     W  ++ +C  H       ++FD+++Q+ +    V+ +G  A 
Sbjct: 599 EDAKMQFFEMS-ERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAA 657

Query: 420 MSN 422
            S+
Sbjct: 658 CSH 660



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 188/364 (51%), Gaps = 9/364 (2%)

Query: 13  FTQALKACSLAHPHQKALE-IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           F  AL+ C  +  H   +  IHA  I  G   D    N L+  Y     +  A ++F  +
Sbjct: 44  FACALRECRGSVKHWPLVPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQL 103

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              D VSW  ++SG ++ G  +EA+ ++  +    V P    L SVLSAC+     + G+
Sbjct: 104 SARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGR 163

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +HA   +  + +  ++ NA++  Y+R GSL+    +F +MP  + V++ T+I  +A+ G
Sbjct: 164 LVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCG 223

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
             + A+ +F+EM +     P+  T+ ++L+AC+SI  L+ GK +HSY+  +  +S   ++
Sbjct: 224 NGESALEIFEEM-RLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYL-LKAGMSPDYII 281

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
             +++++YVKCG +  A+++F      + + W+ ++          ++  LF  M+   V
Sbjct: 282 EGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGV 341

Query: 309 FPDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
            P++ T+  L+  C++ G ++ G  I   ++ T +E    M     ++DMY + G L++A
Sbjct: 342 RPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFE--SDMYVSGVLIDMYSKYGWLDKA 399

Query: 368 EAFI 371
              +
Sbjct: 400 RRIL 403



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 185/362 (51%), Gaps = 10/362 (2%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           Y  +  L AC+ A   ++   +HA V + G   +  + N+L+  Y+    +  A ++F+ 
Sbjct: 144 YVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSE 203

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLG 127
           + + D V++ T+IS  ++CG  + A+++F  + +    P+  T+ S+L+AC+S+     G
Sbjct: 204 MPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKG 263

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           K +H++ L+     + I++ ++LD Y++CG +     +F    + NVV W  M+  Y + 
Sbjct: 264 KQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQI 323

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
               ++  +F +M       PNE T   +L  C+    ++ G+ +H  +S +        
Sbjct: 324 SDLAKSFDLFCQMVAAG-VRPNEFTYPCLLRTCTYAGEINLGEQIH-LLSIKTGFESDMY 381

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V   +I+MY K G +  A ++  +L  KD +SW+++I+G   +   ++AL+ F  M +  
Sbjct: 382 VSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFG 441

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY--EIVPQMQHYACVVDMYGRAGLLE 365
           ++PD++   + ISAC+    + QG    +  S VY       +  +  +V++Y R G  +
Sbjct: 442 IWPDNIGLASAISACAGIKAMRQGQ---QIHSRVYVSGYSADVSIWNALVNLYARCGRSK 498

Query: 366 EA 367
           EA
Sbjct: 499 EA 500



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 9/138 (6%)

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
           L    + GN +I++Y K G V  A +VF  L+ +D +SW  ++SG A NG G +A+ L+ 
Sbjct: 73  LGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYH 132

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLI----LFKAMSTVYEIVPQMQHYACVVDM 357
            M  + V P      +++SAC+   L +QG +    ++K  S    +V        ++ +
Sbjct: 133 QMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGN-----ALIAL 187

Query: 358 YGRAGLLEEAEAFIREMP 375
           Y R G L  AE    EMP
Sbjct: 188 YLRFGSLSLAERVFSEMP 205



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 86/189 (45%), Gaps = 11/189 (5%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M      YN +TF  ++ A +     ++  +IHA VI+ G   +  + N+L+  Y     
Sbjct: 538 MYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGS 597

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           I  A   F  +   + VSW TII+  S+ G+  EA+D+F  +    +KPN  T + VL+A
Sbjct: 598 IEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAA 657

Query: 118 CS--SLVSHKLGKAIHAHSLRNLNENNIILDN--AILDFYIRCGSLASCGYLFVKMP-KR 172
           CS   LV   LG      S   ++      D+   ++D   R G L        +MP   
Sbjct: 658 CSHVGLVEEGLGYFKSMSSEHGIHPRP---DHYACVVDILGRAGQLDRARKFVEEMPVSA 714

Query: 173 NVVSWTTMI 181
           N + W T++
Sbjct: 715 NAMVWRTLL 723


>gi|297599623|ref|NP_001047477.2| Os02g0625100 [Oryza sativa Japonica Group]
 gi|125582938|gb|EAZ23869.1| hypothetical protein OsJ_07586 [Oryza sativa Japonica Group]
 gi|255671102|dbj|BAF09391.2| Os02g0625100 [Oryza sativa Japonica Group]
          Length = 493

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 147/444 (33%), Positives = 235/444 (52%), Gaps = 39/444 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +H + + +L  CS    H  A  +H+  +  GH  D+++ N+    Y    D+ SA ++F
Sbjct: 70  DHLSLSFSLHPCSRLPSHPVASVVHSLAVRLGHARDVYVVNAAASAYFAAADVASAERLF 129

Query: 69  N--SVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKL 126
           +  S    DVV+WTT+++G +  G  + A   F   D  P                    
Sbjct: 130 SEASRDVADVVTWTTMVTGHANAGDVERARWFF---DAMP-------------------- 166

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
                        E N++  N +L  Y R G L     LF +MP RN  +W +MI G  +
Sbjct: 167 -------------EKNVVSWNTMLGAYARAGMLPKARKLFDRMPSRNAATWGSMITGLLQ 213

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
              C+EA+ VF +M  +    PNE  LV+ +SAC+ +  +  G +VH Y     + ++S 
Sbjct: 214 SDHCEEALRVFSDMVASGVV-PNEPALVSTVSACTQLRWMEHGTWVHGYAERELNGAMSA 272

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
           ++  A+++MY KCG +  A++VF  +  ++  SW+++I+GLAMNG  RQAL LF  M + 
Sbjct: 273 VLATAIVDMYGKCGSIRDAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQLA 332

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
            V P+D+TFI L+SACSH GLVD+G  LF  M   + I P  +HY  +VD+ GR+G + E
Sbjct: 333 GVRPNDITFIGLLSACSHSGLVDEGRWLFYKMVNHFGIQPVPEHYGLMVDLLGRSGHVRE 392

Query: 367 AEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAG 426
           A  F++ MP+E    +WGAL  AC+IH   E+ + + + L+  +      + L+SN +A 
Sbjct: 393 AVDFVKSMPVEPHPGLWGALAGACKIHGEVELGEEVAKKLIELEPQHGSRYILLSNIYAT 452

Query: 427 ADRWEDTNKIRDEIRRMGLKKKTG 450
           ++RW+D   +R  ++   + K TG
Sbjct: 453 SNRWDDMANVRRILKDRKVPKGTG 476


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 151/482 (31%), Positives = 253/482 (52%), Gaps = 44/482 (9%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           LK C      ++  ++HAH+   G +  ++I N LL  Y     +  A ++F+ +V  D+
Sbjct: 126 LKFCLKQRALKEGKQVHAHIKTSGSI-GLYISNRLLDMYAKCGSLVDAEKVFDEMVHRDL 184

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTL--VSVLSAC---------------- 118
            SW  +ISG  K G  ++A ++F   D  PN +     +++S C                
Sbjct: 185 CSWNIMISGYVKGGNFEKARNLF---DKMPNRDNFSWTAIISGCVQHNRPEEALELYRLM 241

Query: 119 --------------------SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGS 158
                               +++ S  +GK IH H +R   +++ ++  ++LD Y +CGS
Sbjct: 242 QKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGS 301

Query: 159 LASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLS 218
           +    Y+F KM +R+VVSWTTMI  Y + G  +E  ++F+ +  +    PN+ T   VL+
Sbjct: 302 IEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSN-IMPNDFTFAGVLN 360

Query: 219 ACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI 278
           AC+ ++A   GK +H+Y+  R      +   +A+++MY KCGD+  A  VF +L   D  
Sbjct: 361 ACADLAAEDLGKQIHAYM-VRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLF 419

Query: 279 SWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM 338
           SW++++ G A +G   +AL  F L++ +   PD + FI ++SAC+H GLVD+GL  F ++
Sbjct: 420 SWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSI 479

Query: 339 STVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEM 398
              + +   + HYAC++D+  RAG   EAE+ I EMPI+ +  +W ALL  CRIH N E+
Sbjct: 480 KEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCRIHGNLEL 539

Query: 399 FDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNP 458
             R  + L   +  +  T+  ++N +A A    +   IR+ +   G+ KK G SWIE+  
Sbjct: 540 AKRAAKSLFEIEPENPATYVTLANIYASAGMRAEEANIRETMDSRGIVKKPGMSWIEIRR 599

Query: 459 SI 460
            +
Sbjct: 600 EV 601



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 164/349 (46%), Gaps = 49/349 (14%)

Query: 83  ISGLSKCGFHKEAIDMFCGIDV------------KPNANTLVSVLSACSSLVSHKLGKAI 130
           I+ L      KEAID+ CG               KP A+  +++L  C    + K GK +
Sbjct: 82  INRLCDSKLFKEAIDILCGQSRLREAVQLLYRIEKPYASIYLTLLKFCLKQRALKEGKQV 141

Query: 131 HAHSLRNLNENNIILDNAILDFYIRCGSLASC--------------------GY------ 164
           HAH ++      + + N +LD Y +CGSL                       GY      
Sbjct: 142 HAH-IKTSGSIGLYISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNF 200

Query: 165 -----LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
                LF KMP R+  SWT +I G  +    +EA+ +++ M+K   ++ N+ T+ + L+A
Sbjct: 201 EKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAA 260

Query: 220 CSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS 279
            ++I +L  GK +H +I  R  L    +V  ++++MY KCG +  A  +F+ +  +D +S
Sbjct: 261 SAAIPSLHMGKKIHGHI-MRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVS 319

Query: 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMS 339
           W+T+I     NG   +   LF  ++ + + P+D TF  +++AC+     D G  +   M 
Sbjct: 320 WTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMV 379

Query: 340 TV-YEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
            V ++        + +V MY + G +E A++    +P + +   W +LL
Sbjct: 380 RVGFDSFSSAA--SALVHMYSKCGDIENAKSVFEILP-QPDLFSWTSLL 425


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  270 bits (689), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 138/434 (31%), Positives = 248/434 (57%), Gaps = 10/434 (2%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           ++H   ++ G   D+ + NSL++ Y  +   + A ++FN +   D++SW ++IS  ++  
Sbjct: 307 QVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSS 366

Query: 91  FHKEAIDMFCGI---DVKPNANTLVSVL-----SACSSLVSHKLGKAIHAHSLRNLNENN 142
             +E++++F  +    +KP+  TL S+       AC  LV    GK IHAH+++   +++
Sbjct: 367 LEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSD 426

Query: 143 IILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202
           + +++ ILD YI+CG + + G +F  +   + V+WT+MI G  + G   +A+ ++  M +
Sbjct: 427 LHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQ 486

Query: 203 TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 262
           ++   P+E T   ++ A S ++AL  G+ +H+ +  + D      VG ++++MY KCG++
Sbjct: 487 SR-VMPDEYTFATLIKASSCVTALEQGRQLHANV-IKLDCVSDPFVGTSLVDMYAKCGNI 544

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
             A ++F  +  ++   W+ ++ GLA +G   +A+ LF  M  + + PD V+FI ++SAC
Sbjct: 545 EDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSAC 604

Query: 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
           SH GL  +      +M   Y I P+++HY+C+VD  GRAGL++EA+  I  MP +A  S+
Sbjct: 605 SHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASI 664

Query: 383 WGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442
             ALL ACRI  + E   R+   L   +      + L+SN +A A+RW+D    R  ++R
Sbjct: 665 NRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKR 724

Query: 443 MGLKKKTGCSWIEV 456
             +KK  G SWI+V
Sbjct: 725 KNVKKDPGFSWIDV 738



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 190/395 (48%), Gaps = 25/395 (6%)

Query: 33  HAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGL-----S 87
           HA ++  G   D F+ N+LL  Y     + SA Q+F++    D+V+W  I+        S
Sbjct: 100 HARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDS 159

Query: 88  KCGFHKEAIDMFCGIDVKPNANT---LVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
             G  +E + +F  +     + T   L  VL  C +       + +H ++++   E ++ 
Sbjct: 160 NDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVF 219

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           +  A+++ Y +CG +     LF  M +R+VV W  M+ GY + G  KEA  +F E  ++ 
Sbjct: 220 VSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSG 279

Query: 205 EAEPNEATLVNVLSAC--SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 262
              P+E ++  +L+ C  +    L  GK VH  I+ +  L     V N+++NMY K G  
Sbjct: 280 -LRPDEFSVQLILNGCLWAGTDDLELGKQVHG-IAVKSGLDSDVSVANSLVNMYSKMGCA 337

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTF--IALIS 320
             A +VFN + + D ISW+++IS  A +    +++ LF  ++   + PD  T   I L +
Sbjct: 338 YFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLAT 397

Query: 321 ACSHGG---LVDQG-LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPI 376
           A    G   L+DQG  I   A+   ++    +   + ++DMY + G +  A      +  
Sbjct: 398 AAKACGCLVLLDQGKQIHAHAIKAGFD--SDLHVNSGILDMYIKCGDMVNAGIVFNYISA 455

Query: 377 EAEWSVWGALLNACRIHRNDE----MFDRIRQDLV 407
             + + W ++++ C  + N++    ++ R+RQ  V
Sbjct: 456 PDDVA-WTSMISGCVDNGNEDQALRIYHRMRQSRV 489



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 123/227 (54%), Gaps = 5/227 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T   A KAC       +  +IHAH I+ G   D+ + + +L  Y+   D+ +A  +FN +
Sbjct: 394 TLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYI 453

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
             PD V+WT++ISG    G   +A+ ++  +    V P+  T  +++ A S + + + G+
Sbjct: 454 SAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGR 513

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +HA+ ++    ++  +  +++D Y +CG++     LF KM  RN+  W  M+ G A+ G
Sbjct: 514 QLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHG 573

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG-KYVHS 234
             +EAV++F+ M K+   EP+  + + +LSACS     S   +Y+HS
Sbjct: 574 NAEEAVNLFKSM-KSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHS 619



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 64/114 (56%), Gaps = 3/114 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YTF   +KA S     ++  ++HA+VI+   + D F+  SL+  Y    +I  A+++F
Sbjct: 492 DEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLF 551

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACS 119
             +   ++  W  ++ GL++ G  +EA+++F  +    ++P+  + + +LSACS
Sbjct: 552 KKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACS 605


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  270 bits (689), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 151/455 (33%), Positives = 251/455 (55%), Gaps = 5/455 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N Y F   + +CS +    +  + H + ++ G +   +++N+L+  Y    D+  A  ++
Sbjct: 128 NEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVW 187

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAI---DMFCGIDVKPNANTLVSVLSACSSLVSHK 125
             V   DV S+  II+GL + G+  EA+   D      +  +  T V+    CS L   +
Sbjct: 188 YEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLR 247

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG  +H    R   E +  + +AI+D Y +CG++ +   +F ++  +NVVSWT ++  Y+
Sbjct: 248 LGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYS 307

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G  +EA++ F EME      PNE T   +L++C+ ISAL  GK +H+ I  +      
Sbjct: 308 QNGCFEEALNFFPEME-VDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIK-KSGFEDH 365

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
            +VGNA+INMY K G +  A +VF  +  +D I+WS +I GL+ +G GR+AL +F  M+ 
Sbjct: 366 IIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGREALVVFQEMLA 425

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
               P  VTF+ ++SAC+H G V +G      +     I P ++HY C+V +  +AG L+
Sbjct: 426 AKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGRLD 485

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EAE F++  P++ +   W  LL+AC +H+N  +  ++ + ++      VGT+ L+SN +A
Sbjct: 486 EAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQMDPGDVGTYILLSNMYA 545

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            A RW+   KIR  +R   +KK+ G SWIE+  SI
Sbjct: 546 KAKRWDGVVKIRKLMRERNVKKEPGASWIEIRNSI 580



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 165/320 (51%), Gaps = 13/320 (4%)

Query: 8   YNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           +++ T+  A   CS     +  L++H  +   G  +D F+ ++++  Y    +I +A ++
Sbjct: 228 WDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKV 287

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSH 124
           FN +   +VVSWT I++  S+ G  +EA++ F  ++V    PN  T   +L++C+ + + 
Sbjct: 288 FNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISAL 347

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
             GK +H    ++  E++II+ NA+++ Y + GS+ +   +F++M  R+ ++W+ MI G 
Sbjct: 348 GHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGL 407

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           +  G  +EA+ VFQEM   KE  P+  T V VLSAC+ + ++  G Y  + +  +  +  
Sbjct: 408 SHHGLGREALVVFQEMLAAKEC-PHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEP 466

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DKISWSTVISGLAMN---GCGRQALQLF 300
                  ++ +  K G +  A         K D ++W T++S   ++   G G++  +L 
Sbjct: 467 GVEHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAELV 526

Query: 301 SLMIINAVFPDDVTFIALIS 320
             M      P DV    L+S
Sbjct: 527 LQMD-----PGDVGTYILLS 541



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 187/397 (47%), Gaps = 34/397 (8%)

Query: 17  LKACSLAHPHQKALE----------------IHAHVIEYGH-LHDIFIQ-NSLLHFYVTV 58
           LK+ ++ HP +  ++                IHAH+I       D  +Q NSL++ Y   
Sbjct: 16  LKSSTVGHPLEHTIQLLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKC 75

Query: 59  KDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGID-VKPNANTLVSV 114
             I  A  +F+ +   +VVSW  +++G    G   E + +F     +D ++PN     ++
Sbjct: 76  DQIMVARILFDGMRKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATI 135

Query: 115 LSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV 174
           +S+CS       G   H ++L++    +  + NA++  Y R   +     ++ ++P  +V
Sbjct: 136 ISSCSDSGQVVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDV 195

Query: 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
            S+  +I G  E G+  EA+ V   M        N  T V     CS +  L  G  VH 
Sbjct: 196 FSYNIIINGLLENGYPSEALEVLDRMVDECIVWDN-VTYVTAFGLCSHLKDLRLGLQVHC 254

Query: 235 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
            +  R      + V +A+I+MY KCG++  A +VFN L  K+ +SW+ +++  + NGC  
Sbjct: 255 RM-FRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFE 313

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILF-KAMSTVYE---IVPQMQH 350
           +AL  F  M ++ + P++ TF  L+++C+    +  G +L  +   + +E   IV     
Sbjct: 314 EALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGN--- 370

Query: 351 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
              +++MY ++G +E A     EM I  +   W A++
Sbjct: 371 --ALINMYSKSGSIEAAHKVFLEM-ICRDSITWSAMI 404



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 157/346 (45%), Gaps = 22/346 (6%)

Query: 112 VSVLSACSSLVSHKLGKAIHAHSL--RNLNENNIILDNAILDFYIRCGSLASCGYLFVKM 169
           + +L   +   + K GK IHAH +      ++NI+  N++++ Y +C  +     LF  M
Sbjct: 29  IQLLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGM 88

Query: 170 PKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 229
            KRNVVSW  ++ GY   G   E + +F+ M       PNE     ++S+CS    +  G
Sbjct: 89  RKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEG 148

Query: 230 KYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAM 289
              H Y + +  L     V NA+I MY +  DV  A+ V+  +   D  S++ +I+GL  
Sbjct: 149 WQCHGY-ALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLE 207

Query: 290 NGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI----LFKAMSTVYEIV 345
           NG   +AL++   M+   +  D+VT++     CSH   +  GL     +F+  +     V
Sbjct: 208 NGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFV 267

Query: 346 PQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL-----NACRIHRNDEMFD 400
                 + ++DMYG+ G +  A      +  +   S W A+L     N C     +E  +
Sbjct: 268 S-----SAIIDMYGKCGNILNARKVFNRLQTKNVVS-WTAILAAYSQNGCF----EEALN 317

Query: 401 RIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446
              +  V+    +  TFA++ N+ AG         +   I++ G +
Sbjct: 318 FFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFE 363


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  270 bits (689), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 137/357 (38%), Positives = 215/357 (60%), Gaps = 4/357 (1%)

Query: 103 DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC 162
           DV P+  +   +L +C+     +LG+A H   ++   E ++IL   +LDFY + G +   
Sbjct: 25  DVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKHGYVEEA 84

Query: 163 GYLFVKMPKRNV--VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
             LF  M +RN   V+W TMI  Y + G    A+S+FQ+M+ ++  +P E T+V++LSAC
Sbjct: 85  RNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQ-SENVKPTEVTMVSLLSAC 143

Query: 221 SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
           + + AL  G+++H YI T+  L +  ++GNA+I+MY KCG +  AI VF+ L+ K+   W
Sbjct: 144 AHLGALDMGEWIHGYIRTKR-LKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCW 202

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340
           +++I GL MNG G +A+  F +M    + PD VTF+ ++S CSH GL+  G   F  M  
Sbjct: 203 NSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLG 262

Query: 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFD 400
           VY + P ++HY C+VD+ GRAG L+EA   IR MP++    V G+LL AC+IH++ ++ +
Sbjct: 263 VYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGE 322

Query: 401 RIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           ++ Q L+       G +  +SN +A   RW+D N  R  + + G+ K  GCS IEVN
Sbjct: 323 QVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVN 379



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 141/269 (52%), Gaps = 6/269 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           +F+  L++C+++   Q     H  +++ G  +D+ +Q  LL FY     +  A  +F+++
Sbjct: 32  SFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKHGYVEEARNLFDNM 91

Query: 72  VF--PDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKL 126
                + V+W T+IS   +CG    AI MF  +   +VKP   T+VS+LSAC+ L +  +
Sbjct: 92  TERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDM 151

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           G+ IH +      + +++L NA++D Y +CG+L +   +F  + ++N+  W ++I G   
Sbjct: 152 GEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGM 211

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
            G  +EA++ F  MEK +  +P+  T V +LS CS    LS G+   S +   Y L    
Sbjct: 212 NGRGEEAIAAFIVMEK-EGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGV 270

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
                ++++  + G +  A+++   +  K
Sbjct: 271 EHYGCMVDLLGRAGYLKEALELIRAMPMK 299


>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score =  270 bits (689), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 143/459 (31%), Positives = 259/459 (56%), Gaps = 9/459 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +TF+  LKAC L +  +K L+IH   ++ G    + + NSL+  Y     I  A ++F
Sbjct: 477 NEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVF 536

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLVS 123
             +V   ++SW  +I+G    G+  +A+D F       I  +P+  TL S+L ACSS   
Sbjct: 537 RRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGM 596

Query: 124 HKLGKAIHAHSLRN--LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
              GK IH   +R+     ++  +  +++D Y++CG L S    F ++ ++ ++SW+++I
Sbjct: 597 IYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLI 656

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
            GYA+ G   EA+ +F+ +++   ++ +   L +++   +  + L  GK + + ++ +  
Sbjct: 657 LGYAQEGEFVEAMGLFKRLQELN-SQIDSFALSSIIGVFADFALLRQGKQMQA-LAVKLP 714

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
             +   V N+V++MY+KCG V  A + F  +  KD ISW+ VI+G   +G G++++++F 
Sbjct: 715 SGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFY 774

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            M+ + + PD+V ++A++SACSH G++ +G  LF  +   + I P+++HYACVVD+ GRA
Sbjct: 775 EMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRA 834

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           G L+EA+  I  MPI+    +W  LL+ CR+H + E+   + + L+     +   + +MS
Sbjct: 835 GRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMS 894

Query: 422 NTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           N +  A  W +    R+     GLKK+ G SW+E+   +
Sbjct: 895 NLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIEREV 933



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 180/350 (51%), Gaps = 16/350 (4%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID 103
           ++   N L+  Y   ++   A+++F+S+   +VVSW+ ++SG    G  K ++ +F  + 
Sbjct: 411 NLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMG 470

Query: 104 ---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLA 160
              + PN  T  + L AC  L + + G  IH   L+   E  + + N+++D Y +CG + 
Sbjct: 471 RQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRIN 530

Query: 161 SCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE-PNEATLVNVLSA 219
               +F ++  R+++SW  MI G+   G+  +A+  F  M++    E P+E TL ++L A
Sbjct: 531 EAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKA 590

Query: 220 CSSISALSFGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI 278
           CSS   +  GK +H + + + +    S  +  +++++YVKCG +  A + F+ +  K  I
Sbjct: 591 CSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMI 650

Query: 279 SWSTVISGLAMNGCGRQALQLFS-LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKA 337
           SWS++I G A  G   +A+ LF  L  +N+   D     ++I   +   L+ QG    K 
Sbjct: 651 SWSSLILGYAQEGEFVEAMGLFKRLQELNSQI-DSFALSSIIGVFADFALLRQG----KQ 705

Query: 338 MSTVYEIVP---QMQHYACVVDMYGRAGLLEEAEAFIREMPIEA--EWSV 382
           M  +   +P   +      VVDMY + GL++EAE    EM ++    W+V
Sbjct: 706 MQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTV 755



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 80/142 (56%), Gaps = 4/142 (2%)

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
           +  N +I+MY KC +  +A +VF+ +  ++ +SWS ++SG  +NG  + +L LFS M   
Sbjct: 413 ITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQ 472

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFK-AMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
            ++P++ TF   + AC     +++GL +    +   +E++ ++ +   +VDMY + G + 
Sbjct: 473 GIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGN--SLVDMYSKCGRIN 530

Query: 366 EAEAFIREMPIEAEWSVWGALL 387
           EAE   R + ++     W A++
Sbjct: 531 EAEKVFRRI-VDRSLISWNAMI 551


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 148/421 (35%), Positives = 243/421 (57%), Gaps = 6/421 (1%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID 103
           D+   N+++  Y  V  I  A ++F+ +   D  SW  +ISG    G++ EA+D+F  + 
Sbjct: 128 DLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQ 187

Query: 104 VKPNAN----TLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSL 159
              ++N    TL S L+A +++ S + GK IH + +R+  E + ++  A+LD Y +CGSL
Sbjct: 188 ENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSL 247

Query: 160 ASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
                +F +M  +++VSWTTMI    E G  KE  S+F+++  +    PNE T   VL+A
Sbjct: 248 NEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSG-VRPNEYTFAGVLNA 306

Query: 220 CSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS 279
           C+ ++A   GK VH Y+ TR      +   +A++++Y KCG+   A +VFN +   D +S
Sbjct: 307 CADLAAEQMGKEVHGYM-TRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVS 365

Query: 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMS 339
           W+++I G A NG    ALQ F  ++ +   PD++TF+ ++SAC+H GLVD GL  F ++ 
Sbjct: 366 WTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVK 425

Query: 340 TVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMF 399
             + +V    HYACV+D+  R+G  +EAE  I  MP++ +  +W +LL  CRIH N E+ 
Sbjct: 426 EKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIELA 485

Query: 400 DRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPS 459
           +R  + L   +  +  T+  +SN +A A  W +  K+R+++   G+ KK G SWIE+   
Sbjct: 486 ERAAKALFELEPENPATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGKSWIEIKRQ 545

Query: 460 I 460
           +
Sbjct: 546 V 546



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 155/310 (50%), Gaps = 16/310 (5%)

Query: 27  QKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGL 86
           ++  EIH ++I  G   D  +  +LL  Y     +  A  IF+ +   D+VSWTT+I   
Sbjct: 213 RRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRC 272

Query: 87  SKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNI 143
            + G  KE   +F    G  V+PN  T   VL+AC+ L + ++GK +H +  R   +   
Sbjct: 273 FEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFS 332

Query: 144 ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
              +A++  Y +CG+  +   +F +MP+ ++VSWT++I GYA+ G    A+  F+ + ++
Sbjct: 333 FAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRS 392

Query: 204 KEAEPNEATLVNVLSACSSISALSFG-KYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 262
              +P+E T V VLSAC+    +  G +Y HS +  ++ L  +      VI++  + G  
Sbjct: 393 G-TKPDEITFVGVLSACTHAGLVDIGLEYFHS-VKEKHGLVHTADHYACVIDLLARSGRF 450

Query: 263 GIAIQVF-NMLAYKDKISWSTVISGLAMNG----CGRQALQLFSLMIINAVFPDDVTFIA 317
             A  +  NM    DK  W++++ G  ++G      R A  LF L   N       T+I 
Sbjct: 451 KEAENIIDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFELEPENP-----ATYIT 505

Query: 318 LISACSHGGL 327
           L +  ++ GL
Sbjct: 506 LSNIYANAGL 515



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 159/327 (48%), Gaps = 37/327 (11%)

Query: 93  KEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDF 152
           KEA+D    I  +P+     ++++AC      +LGK +HAH+  +     I++ N ++  
Sbjct: 49  KEAVDYLHRIP-QPSPRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHM 107

Query: 153 YIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT--------- 203
           Y +CGSL     LF ++P++++ SW TMI GYA  G  ++A  +F EM            
Sbjct: 108 YAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVI 167

Query: 204 ----------------KEAEPNEATLVNVLSACSSISALSF------GKYVHSYISTRYD 241
                           +  + NE++  N+ +  S+++A +       GK +H Y+  R  
Sbjct: 168 SGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYL-IRSG 226

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
           L +  +V  A++++Y KCG +  A  +F+ +A KD +SW+T+I     +G  ++   LF 
Sbjct: 227 LELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFR 286

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV-YEIVPQMQHYACVVDMYGR 360
            ++ + V P++ TF  +++AC+       G  +   M+ V Y+  P     + +V +Y +
Sbjct: 287 DLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYD--PFSFAASALVHVYSK 344

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALL 387
            G  E A     +MP   +   W +L+
Sbjct: 345 CGNTETARRVFNQMP-RPDLVSWTSLI 370



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 13/184 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YTF   L AC+     Q   E+H ++   G+    F  ++L+H Y    +  +A ++F
Sbjct: 296 NEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVF 355

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           N +  PD+VSWT++I G ++ G    A+  F  +     KP+  T V VLSAC    +H 
Sbjct: 356 NQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSAC----THA 411

Query: 126 LGKAIHAHSLRNLNENNIILDNA-----ILDFYIRCGSLASCGYLFVKMP-KRNVVSWTT 179
               I      ++ E + ++  A     ++D   R G       +   MP K +   W +
Sbjct: 412 GLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKFLWAS 471

Query: 180 MIGG 183
           ++GG
Sbjct: 472 LLGG 475


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 142/423 (33%), Positives = 250/423 (59%), Gaps = 5/423 (1%)

Query: 42  LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG 101
           + +I   N L++ +V   D+ SA ++F+ ++  +V +W  ++SGL +  F++  + +F  
Sbjct: 20  MRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFRE 79

Query: 102 ---IDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGS 158
              +   P+  TL SVL  C+ L +   GK +HA+ L+   E N+++ +++   Y++ GS
Sbjct: 80  MHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGS 139

Query: 159 LASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLS 218
           L     +   M  RNVV+W T+I G A+ G  +  + ++  M K     P++ TLV+V+S
Sbjct: 140 LGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMM-KMSGLRPDKITLVSVIS 198

Query: 219 ACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI 278
           + + ++ L  G+ +H+  + +   + +  V +++I+MY KCG +  +++      + D +
Sbjct: 199 SSAELATLFQGQQIHAE-AIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSV 257

Query: 279 SWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM 338
            WS++I+    +G G +A+ LF  M    +  +DVTF++L+ ACSH GL ++G+  FK M
Sbjct: 258 LWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLM 317

Query: 339 STVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEM 398
              Y + P+++HY CVVD+ GR+G L+EAEA IR MP+EA+  +W  LL+ACRIHRN +M
Sbjct: 318 VEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADM 377

Query: 399 FDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNP 458
             R  ++++        T+ L+SN  A A RW+D +K+R  +R   +KK+ G SW+EV  
Sbjct: 378 ATRTAEEILRLNPQDSATYVLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKN 437

Query: 459 SIF 461
            +F
Sbjct: 438 RVF 440



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 140/281 (49%), Gaps = 5/281 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +T    L+ C+         ++HA+V++YG+  ++ + +SL H Y+    +    ++ 
Sbjct: 88  DEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVI 147

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
            ++   +VV+W T+I+G ++ G  +  +D++  +    ++P+  TLVSV+S+ + L +  
Sbjct: 148 KAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLF 207

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ IHA +++    + + + ++++  Y +CG L       +     + V W++MI  Y 
Sbjct: 208 QGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYG 267

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G  +EAV +F++ME+      N+ T +++L ACS       G      +  +Y L   
Sbjct: 268 FHGRGEEAVHLFEQMEQEGLG-GNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPR 326

Query: 246 NLVGNAVINMYVKCGDVGIA-IQVFNMLAYKDKISWSTVIS 285
                 V+++  + G +  A   + +M    D + W T++S
Sbjct: 327 LEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLS 367


>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
 gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
          Length = 427

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 144/397 (36%), Positives = 233/397 (58%), Gaps = 11/397 (2%)

Query: 66  QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHK 125
           ++F  +   DVVSW ++I GL K G   EA  +F  + +K +A +  ++L         K
Sbjct: 2   RLFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEMPMK-DAVSWNTILDGYV-----K 55

Query: 126 LGKAIHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
            G+   A  L  ++ E N++  + ++  Y + G +     LF +MP +N+VSWT ++ GY
Sbjct: 56  AGEMNKAFGLFESMPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGY 115

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST-RYDLS 243
           A +G  K+A+  F++ME+    +P++ T++++L++C+    L  GK VH+ I   RY  S
Sbjct: 116 AVKGLAKDAIRSFEQMEEAG-LKPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCS 174

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           V+  V NA+++MY KCG V  A+ VFN ++ KD +SW+ ++ GLAM+G G +ALQLFS+M
Sbjct: 175 VN--VSNALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIM 232

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
                 PD VT +A++ AC H G VD+G+  F  M   Y IVP ++HY C+VD+ GR G 
Sbjct: 233 RQEGFRPDKVTLVAVLCACVHAGFVDEGIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGR 292

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           L+EA   ++ MP+E    +WG LL ACR+H    + + +   L   +    G ++L+SN 
Sbjct: 293 LKEAYRLVQSMPVEPNVVIWGTLLGACRMHNAVGLAEEVLDCLFKLEPSDPGNYSLLSNI 352

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           FA A  W     +R +++  G++K +G S IEV+  +
Sbjct: 353 FASAGDWSSVANVRLQMKNFGIQKPSGASSIEVDDEV 389



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 99/175 (56%), Gaps = 4/175 (2%)

Query: 49  NSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VK 105
           ++++  Y    D+  A  +F+ +   ++VSWT I+SG +  G  K+AI  F  ++   +K
Sbjct: 78  STMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLK 137

Query: 106 PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYL 165
           P+  T++S+L++C+      LGK +H    R   + ++ + NA++D Y +CG +     +
Sbjct: 138 PDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNALVDMYAKCGQVDRALSV 197

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
           F  M K+++VSW  M+ G A  G  ++A+ +F  M + +   P++ TLV VL AC
Sbjct: 198 FNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIM-RQEGFRPDKVTLVAVLCAC 251



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 98/235 (41%), Gaps = 32/235 (13%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L +C+ +        +H  +    +   + + N+L+  Y     +  A  +FN +
Sbjct: 142 TVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNALVDMYAKCGQVDRALSVFNGM 201

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              D+VSW  ++ GL+  G  ++A+ +F  +     +P+  TLV+VL AC          
Sbjct: 202 SKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDKVTLVAVLCAC---------- 251

Query: 129 AIHA----HSLRNLNENNIILDNAI----------LDFYIRCGSLASCGYLFVKMP-KRN 173
            +HA      +R    NN+  D  I          +D   R G L     L   MP + N
Sbjct: 252 -VHAGFVDEGIRYF--NNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQSMPVEPN 308

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP-NEATLVNVLSACSSISALS 227
           VV W T++G          A  V   + K + ++P N + L N+ ++    S+++
Sbjct: 309 VVIWGTLLGACRMHNAVGLAEEVLDCLFKLEPSDPGNYSLLSNIFASAGDWSSVA 363


>gi|326495618|dbj|BAJ85905.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 788

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 151/455 (33%), Positives = 257/455 (56%), Gaps = 20/455 (4%)

Query: 16  ALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 75
           AL AC L     +  E+HA+VI +G  HD+ +  S+L  Y    DI SA  +F ++    
Sbjct: 217 ALAACCLESALMQGREVHAYVIRHGMEHDVKVGTSILDMYCKCGDIASAEGVFATMPSRT 276

Query: 76  VVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN-----TLVSVLSACSSLVSHKLGKAI 130
           VV+W  +I G +     +EA D  C + +K   +     T +++L+AC+   S   G+++
Sbjct: 277 VVTWNCMIGGYALNERPEEAFD--CFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSV 334

Query: 131 HAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFC 190
           H +  R     +++L+ A+L+ Y + G + S   +F +M  + +VSW  MI  Y  +   
Sbjct: 335 HGYITRRQFLPHVVLETALLEMYSKVGKVKSSEKVFGQMTTKTLVSWNNMIAAYMYKEMY 394

Query: 191 KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGN 250
            EA+++F ++   +   P+  T+  V+ A   +  L   + +HSYI  R     + L+ N
Sbjct: 395 MEAITLFLDL-LNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYI-IRLGYGENTLIMN 452

Query: 251 AVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP 310
           A+++MY +CGDV  + ++F+ +A KD ISW+T+I G A++G GR AL++FS M  N + P
Sbjct: 453 AIMHMYARCGDVLSSREIFDKMAAKDVISWNTMIMGYAIHGQGRSALEMFSEMKCNGLRP 512

Query: 311 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAF 370
           ++ TF+++++ACS  GL D+G   F +M   Y ++PQ++HY C+ D+ GRAG L+E   F
Sbjct: 513 NESTFVSVLTACSVSGLTDEGWTQFNSMQRDYGMIPQIEHYGCMTDLLGRAGDLKEVMQF 572

Query: 371 IREMPIEAEWSVWGALLNACRIHRND--------EMFDRIRQDLVNKKGVSVGTFALMSN 422
           I  MPI+  + VWG+LL A R +RND        E   ++ QD +     + G + L+S+
Sbjct: 573 IENMPIDPTFRVWGSLLTASR-NRNDIDIAEYAAERIFQLEQDQLEHD--NTGCYVLISS 629

Query: 423 TFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            +A A RW+D  +I+  +   GL++    S +E++
Sbjct: 630 MYADAGRWKDVERIKSLMEEKGLRRTDPRSIVELH 664



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 168/327 (51%), Gaps = 7/327 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYG-HLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           + +TF   LK C+      +    H+  I  G    D++  NSLL FY  +  +  A ++
Sbjct: 107 DRFTFPVVLKCCARLGALDEGRAAHSAAIRLGVAAADVYTGNSLLAFYARLGLVDDAERV 166

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLVS 123
           F+ +   DVV+W +++ G    G    A+    +M   ++V+ +   +++ L+AC    +
Sbjct: 167 FDGMPARDVVTWNSMVDGYVSNGLGTLALVCFREMHEALEVQHDGVGIIAALAACCLESA 226

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
              G+ +HA+ +R+  E+++ +  +ILD Y +CG +AS   +F  MP R VV+W  MIGG
Sbjct: 227 LMQGREVHAYVIRHGMEHDVKVGTSILDMYCKCGDIASAEGVFATMPSRTVVTWNCMIGG 286

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           YA     +EA   F +M K +  +    T +N+L+AC+   +  +G+ VH YI TR    
Sbjct: 287 YALNERPEEAFDCFVQM-KAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYI-TRRQFL 344

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
              ++  A++ MY K G V  + +VF  +  K  +SW+ +I+         +A+ LF  +
Sbjct: 345 PHVVLETALLEMYSKVGKVKSSEKVFGQMTTKTLVSWNNMIAAYMYKEMYMEAITLFLDL 404

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQ 330
           +   ++PD  T  A++ A    GL+ Q
Sbjct: 405 LNQPLYPDYFTMSAVVPAFVLLGLLRQ 431



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 72/122 (59%), Gaps = 3/122 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           +L+ P   +++T +  + A  L    ++  ++H+++I  G+  +  I N+++H Y    D
Sbjct: 404 LLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIIRLGYGENTLIMNAIMHMYARCGD 463

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           + S+ +IF+ +   DV+SW T+I G +  G  + A++MF  +    ++PN +T VSVL+A
Sbjct: 464 VLSSREIFDKMAAKDVISWNTMIMGYAIHGQGRSALEMFSEMKCNGLRPNESTFVSVLTA 523

Query: 118 CS 119
           CS
Sbjct: 524 CS 525


>gi|225453406|ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
           [Vitis vinifera]
 gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 147/456 (32%), Positives = 253/456 (55%), Gaps = 13/456 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +TF+   K+C+L     +  EIH+HV+  G   D++   +L+  Y     +  A ++F
Sbjct: 87  DSFTFSVLAKSCALNMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLF 146

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNA--NTLVSVLSACSSLVSHKL 126
           + ++    VSWT +I G  + G    A  +F  +  K +A  NT++            KL
Sbjct: 147 DEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQMIEKDSAAFNTMIDAYV--------KL 198

Query: 127 GKAIHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           G    A  L   + E +++    ++  Y   G+L S   LF  MP++N+ SW  MI GY 
Sbjct: 199 GDMCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYR 258

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +     EA+ +F EM+ T   EP+E T+V+VL A + + AL  G +VH ++  R  L  +
Sbjct: 259 QNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVR-RKKLDRA 317

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             VG A+I+MY KCG++  +  VF+ +  K+  SW+ +I+  A+NG  ++AL LF  M  
Sbjct: 318 TNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNH 377

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
               P+++T I ++SAC+H GLV++G   FKAM   + + P+++HY C+VD+ GRAG L+
Sbjct: 378 KGFMPNEITMIGVLSACNHSGLVEEGKRWFKAMEE-FGLTPKIEHYGCMVDLLGRAGCLQ 436

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EAE  +  MP EA   +  + L AC   ++    +R+ ++ +  +  + G + ++ N +A
Sbjct: 437 EAEKLMESMPYEANGIILSSFLFACGYSKDVARAERVLKEAIKMEAWNDGNYIMLRNLYA 496

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
              RW++ ++++  +RR G+KK+ GCS IEV+  ++
Sbjct: 497 NEKRWKEADEVKGLMRRNGVKKEAGCSAIEVDSRVW 532



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 96/220 (43%), Gaps = 15/220 (6%)

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
            +MI  Y       E+ ++++++ +     P+  T   +  +C+   A+  G+ +HS++ 
Sbjct: 56  NSMIKAYVGMRQYSESFALYRDLRRNTSFTPDSFTFSVLAKSCALNMAIWEGQEIHSHVV 115

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
                 +      A+++MY K G +  A ++F+ +  + ++SW+ +I G   +G    A 
Sbjct: 116 A-VGFCLDLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAG 174

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
           +LF  MI      D   F  +I A    G +     LF  M       P+    +  + +
Sbjct: 175 KLFDQMIEK----DSAAFNTMIDAYVKLGDMCSARKLFDEM-------PERSVVSWTIMI 223

Query: 358 YGRA--GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN 395
           YG +  G L+ A +    MP E     W A+++  R ++ 
Sbjct: 224 YGYSSNGNLDSARSLFDAMP-EKNLFSWNAMISGYRQNKQ 262


>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
           1
 gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 684

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 149/457 (32%), Positives = 250/457 (54%), Gaps = 7/457 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +TF  A KA +         +IHA  ++ G + D+F+  S    Y   +    A ++F
Sbjct: 107 NDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLF 166

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLVSHK 125
           + +   ++ +W   IS     G  +EAI+ F     ID  PN+ T  + L+ACS  +   
Sbjct: 167 DEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLN 226

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG  +H   LR+  + ++ + N ++DFY +C  + S   +F +M  +N VSW +++  Y 
Sbjct: 227 LGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYV 286

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +     E  SV     +    E ++  + +VLSAC+ ++ L  G+ +H++ + +  +  +
Sbjct: 287 Q-NHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAH-AVKACVERT 344

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             VG+A+++MY KCG +  + Q F+ +  K+ ++ +++I G A  G    AL LF  M  
Sbjct: 345 IFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAP 404

Query: 306 NAV--FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
                 P+ +TF++L+SACS  G V+ G+ +F +M + Y I P  +HY+C+VDM GRAG+
Sbjct: 405 RGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGM 464

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           +E A  FI++MPI+   SVWGAL NACR+H   ++     ++L        G   L+SNT
Sbjct: 465 VERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNT 524

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           FA A RW + N +R+E++ +G+KK  G SWI V   +
Sbjct: 525 FAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQV 561



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 158/337 (46%), Gaps = 14/337 (4%)

Query: 46  FIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI--- 102
           F+ N L++ Y  +    SA  +       +VVSWT++ISGL++ G    A+  F  +   
Sbjct: 43  FLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRRE 102

Query: 103 DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC 162
            V PN  T      A +SL     GK IHA +++     ++ +  +  D Y +       
Sbjct: 103 GVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDA 162

Query: 163 GYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS 222
             LF ++P+RN+ +W   I      G  +EA+  F E  +  +  PN  T    L+ACS 
Sbjct: 163 RKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRI-DGHPNSITFCAFLNACSD 221

Query: 223 ISALSFGKYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWS 281
              L+ G  +H  +  + +D  VS  V N +I+ Y KC  +  +  +F  +  K+ +SW 
Sbjct: 222 WLHLNLGMQLHGLVLRSGFDTDVS--VCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWC 279

Query: 282 TVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM--S 339
           ++++    N    +A  L+     + V   D    +++SAC+  G+   GL L +++   
Sbjct: 280 SLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACA--GMA--GLELGRSIHAH 335

Query: 340 TVYEIVPQMQHY-ACVVDMYGRAGLLEEAEAFIREMP 375
            V   V +     + +VDMYG+ G +E++E    EMP
Sbjct: 336 AVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMP 372



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 144/311 (46%), Gaps = 19/311 (6%)

Query: 107 NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNE-NNIILDNAILDFYIRCGSLASCGYL 165
           +A+ L  +L    S  S +LG+ +HA  ++ L+      L N +++ Y +     S   +
Sbjct: 5   SADALGLLLKNAISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLV 64

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
               P RNVVSWT++I G A+ G    A+  F EM + +   PN+ T      A +S+  
Sbjct: 65  LRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRR-EGVVPNDFTFPCAFKAVASLRL 123

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285
              GK +H+ ++ +    +   VG +  +MY K      A ++F+ +  ++  +W+  IS
Sbjct: 124 PVTGKQIHA-LAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFIS 182

Query: 286 GLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS-----HGGLVDQGLILFKAMST 340
               +G  R+A++ F         P+ +TF A ++ACS     + G+   GL+L     T
Sbjct: 183 NSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDT 242

Query: 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE--- 397
              +   +      +D YG+   +  +E    EM  +   S W +L+ A   +  DE   
Sbjct: 243 DVSVCNGL------IDFYGKCKQIRSSEIIFTEMGTKNAVS-WCSLVAAYVQNHEDEKAS 295

Query: 398 -MFDRIRQDLV 407
            ++ R R+D+V
Sbjct: 296 VLYLRSRKDIV 306


>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 600

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 146/430 (33%), Positives = 245/430 (56%), Gaps = 14/430 (3%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           +H+HV++ G + D ++ N+L+  Y        A ++F  +   DVVSW + ++ + + G 
Sbjct: 141 VHSHVVKLGSIEDTYVGNALIDAYSKNGGFSDASKVFEEMPRRDVVSWNSAMAAMVRQGE 200

Query: 92  HKEAIDMFCGIDVKPNA--NTLVSVLSACSSLVSHKLGKAIHAHSL-RNLNENNIILDNA 148
            + A  MF  +  K     NTL+   +        K G    A  L + + E N++  + 
Sbjct: 201 VEGARRMFDEMLEKDTVSWNTLLDGYT--------KAGDVEEAFKLFQCMPERNVVSWST 252

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
           ++  Y + G +     +F KMP +N+V+WT M+   A+ G  +EA  +F +M K    E 
Sbjct: 253 VVSGYCKKGDMEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGKLFTQM-KEASVEL 311

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           + A +V++L+AC+   +L+ GK +H Y+ TR  L  S  V NA+I+M+ KCG +  A  V
Sbjct: 312 DVAAVVSILAACAESGSLALGKRIHRYVRTR-QLGRSTHVCNALIDMFCKCGCINRADYV 370

Query: 269 FNM-LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           F+  +  KD +SW+T+I G AM+G G +AL  F+ M +    PD VT I ++SAC+H G 
Sbjct: 371 FDTEIVEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFCPDAVTMINVLSACTHMGF 430

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           V++G   F  M   Y +VPQ++HY C++D+ GR GL++EA   I+ MP +    +WG+LL
Sbjct: 431 VEEGRRYFANMERDYGVVPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWDPNEVIWGSLL 490

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
           +ACR+H+N E  +    +L   +  + G +A++S+ +A A +W D  K R +++  G +K
Sbjct: 491 SACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSSIYAEAGKWSDMAKARMQMKGTGSQK 550

Query: 448 KTGCSWIEVN 457
            +G SWIE++
Sbjct: 551 SSGSSWIELD 560



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 116/265 (43%), Gaps = 19/265 (7%)

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW--TTMIGGYA 185
           + +HA  L++    + +  + +L  Y     L +   +F   P  +  ++   T++  YA
Sbjct: 41  QELHAQLLKHGLHLDPVAASKLLSSYALHRRLPASRGVFASFPNPHATTFLPNTLLRAYA 100

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
                +EAV+VF  M        +  T   ++ A SS       + VHS++     +   
Sbjct: 101 LNALPREAVAVFSAMPHR-----DSFTYSFLIKALSSAGVAPL-RAVHSHVVKLGSIE-D 153

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             VGNA+I+ Y K G    A +VF  +  +D +SW++ ++ +   G    A ++F  M+ 
Sbjct: 154 TYVGNALIDAYSKNGGFSDASKVFEEMPRRDVVSWNSAMAAMVRQGEVEGARRMFDEMLE 213

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
                D V++  L+   +  G V++   LF+ M     +      ++ VV  Y + G +E
Sbjct: 214 K----DTVSWNTLLDGYTKAGDVEEAFKLFQCMPERNVV-----SWSTVVSGYCKKGDME 264

Query: 366 EAEAFIREMPIEAEWSVWGALLNAC 390
            A     +MP +     W  +++AC
Sbjct: 265 MARVIFDKMPTK-NLVTWTIMVSAC 288


>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
 gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
          Length = 508

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 149/435 (34%), Positives = 247/435 (56%), Gaps = 43/435 (9%)

Query: 64  AHQIFNSVVF-PDVVSWTTIISGLSKCGFH-KEAIDMFCGIDV---KPNANTLVSVLSAC 118
           A+ +F S+   PD+  +  II  LS    H K +I ++  I +   +P++ +    L A 
Sbjct: 29  AYSLFTSITHAPDIYLYNNIIKALSSSPTHPKASIFLYNNIQLAGLRPDSYSFPFALKAV 88

Query: 119 SSLVSHKLGKAIHAHSLR-----------------------------------NLNENNI 143
           +   S + G+ +H+ S+R                                   +++  ++
Sbjct: 89  TRFSSIQTGRQLHSQSIRFGLHSDLHVLTAFVQMYSSFGSGCICDARKMFDGMSMSTGDV 148

Query: 144 ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
            L NA+L+ Y + G L +   LF +MP+RNV+SWT +I GYA+     +A+++F+ M+  
Sbjct: 149 ALWNAMLNGYAKHGDLCNARDLFERMPQRNVISWTALITGYAQANRPHDAIALFRRMQ-L 207

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDV 262
           +  EP+E  ++  L+AC+ + AL  G+++  YI  R  L  +N+ + NA+I+MY K GD+
Sbjct: 208 ENVEPDEIAMLVALTACARLGALELGEWIRHYID-RLGLLTTNIPLNNALIDMYAKSGDI 266

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
             A+QVF  + +K  I+W+T+I+GLA++G G +AL++FS M    V P+D+TFIA++SAC
Sbjct: 267 KSALQVFENMNHKTIITWTTMIAGLALHGLGTEALEMFSRMERARVKPNDITFIAILSAC 326

Query: 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
           SH GLV  G   F  M + Y I P+++HY C++D+ GRAG L+EA+  + +MP E    +
Sbjct: 327 SHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMIDLLGRAGHLKEAQTLLAQMPFEPNAVI 386

Query: 383 WGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442
           WG+LL AC  H + E+ +   Q L+  +  + G +AL+SN +A   RW ++  +R  +  
Sbjct: 387 WGSLLAACNTHGDPELGELALQHLLELEPDNSGNYALLSNIYASRGRWNESRVVRKVMWD 446

Query: 443 MGLKKKTGCSWIEVN 457
            G+KK  G S IEVN
Sbjct: 447 AGVKKMPGGSLIEVN 461



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 169/350 (48%), Gaps = 43/350 (12%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYG-----HLHDIFIQ----------------- 48
           Y+F  ALKA +     Q   ++H+  I +G     H+   F+Q                 
Sbjct: 79  YSFPFALKAVTRFSSIQTGRQLHSQSIRFGLHSDLHVLTAFVQMYSSFGSGCICDARKMF 138

Query: 49  -------------NSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEA 95
                        N++L+ Y    D+ +A  +F  +   +V+SWT +I+G ++     +A
Sbjct: 139 DGMSMSTGDVALWNAMLNGYAKHGDLCNARDLFERMPQRNVISWTALITGYAQANRPHDA 198

Query: 96  IDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR-NLNENNIILDNAILD 151
           I +F  +   +V+P+   ++  L+AC+ L + +LG+ I  +  R  L   NI L+NA++D
Sbjct: 199 IALFRRMQLENVEPDEIAMLVALTACARLGALELGEWIRHYIDRLGLLTTNIPLNNALID 258

Query: 152 FYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEA 211
            Y + G + S   +F  M  + +++WTTMI G A  G   EA+ +F  ME+ +  +PN+ 
Sbjct: 259 MYAKSGDIKSALQVFENMNHKTIITWTTMIAGLALHGLGTEALEMFSRMERAR-VKPNDI 317

Query: 212 TLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 271
           T + +LSACS +  +  G++  + + +RY +         +I++  + G +  A  +   
Sbjct: 318 TFIAILSACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMIDLLGRAGHLKEAQTLLAQ 377

Query: 272 LAYK-DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALIS 320
           + ++ + + W ++++  A N  G   L   +L  +  + PD+    AL+S
Sbjct: 378 MPFEPNAVIWGSLLA--ACNTHGDPELGELALQHLLELEPDNSGNYALLS 425



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 114/249 (45%), Gaps = 17/249 (6%)

Query: 16  ALKACSLAHPHQKALEIHAHVIEYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 74
           AL AC+     +    I  ++   G L  +I + N+L+  Y    DI SA Q+F ++   
Sbjct: 220 ALTACARLGALELGEWIRHYIDRLGLLTTNIPLNNALIDMYAKSGDIKSALQVFENMNHK 279

Query: 75  DVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIH 131
            +++WTT+I+GL+  G   EA++MF  ++   VKPN  T +++LSACS +   + G+   
Sbjct: 280 TIITWTTMIAGLALHGLGTEALEMFSRMERARVKPNDITFIAILSACSHVGLVQTGRWYF 339

Query: 132 AHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIGGYAERGF 189
              +     E  I     ++D   R G L     L  +MP + N V W +++      G 
Sbjct: 340 NRMISRYGIEPKIEHYGCMIDLLGRAGHLKEAQTLLAQMPFEPNAVIWGSLLAACNTHGD 399

Query: 190 CKEAVSVFQE-MEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR--YDLSVSN 246
            +      Q  +E   +   N A L N+ +        S G++  S +  +  +D  V  
Sbjct: 400 PELGELALQHLLELEPDNSGNYALLSNIYA--------SRGRWNESRVVRKVMWDAGVKK 451

Query: 247 LVGNAVINM 255
           + G ++I +
Sbjct: 452 MPGGSLIEV 460


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 156/455 (34%), Positives = 241/455 (52%), Gaps = 39/455 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YTF   LKAC      +K   IH    + G   ++F+  SL+H Y        A  +F
Sbjct: 117 DFYTFPPVLKACGTLVDGRK---IHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLF 173

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           + + F D+ SW  +ISGL + G   +A+D+   +    +K N  T+VS+L          
Sbjct: 174 DDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPV-------- 225

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
                                   +D Y + G L S   +F  +P ++V+SW T+I GYA
Sbjct: 226 -----------------------FVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYA 262

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G   EA+ V++ ME+ KE  PN+ T V++L A + + AL  G  +H  +  + +L + 
Sbjct: 263 QNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRV-IKTNLHLD 321

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V   +I++Y KCG +  A+ +F  +  +  ++W+ +IS   ++G   + L+LF  M+ 
Sbjct: 322 VFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLD 381

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             V PD VTF++L+SACSH G V++G   F+ M   Y I P ++HY C+VD+ GRAG LE
Sbjct: 382 EGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLLGRAGYLE 440

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
            A  FI++MP++ + S+WGALL ACRIH N E+       L      +VG + L+SN +A
Sbjct: 441 MAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYA 500

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
              +WE  +K+R   R  GLKK  G S IEVN  +
Sbjct: 501 NVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKV 535



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 178/373 (47%), Gaps = 47/373 (12%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           +HA ++  G +  IFI   L++ Y  + D+  +   F+ +   DV +W ++IS     G 
Sbjct: 38  LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGH 97

Query: 92  HKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
             EAI  F  +    +++P+  T   VL AC +LV    G+ IH  + +   + N+ +  
Sbjct: 98  FHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFVAA 154

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           +++  Y R G       LF  MP R++ SW  MI G  + G   +A+ V  EM + +  +
Sbjct: 155 SLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEM-RLEGIK 213

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
            N  T+V++L                                   ++MY K G +  A +
Sbjct: 214 MNFVTVVSILP--------------------------------VFVDMYAKLGLLDSAHK 241

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM-IINAVFPDDVTFIALISACSHGG 326
           VF ++  KD ISW+T+I+G A NG   +A++++ +M     + P+  T+++++ A +H G
Sbjct: 242 VFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVG 301

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHY--ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 384
            + QG+   K    V +    +  +   C++D+YG+ G L +A +   ++P E+    W 
Sbjct: 302 ALQQGM---KIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESS-VTWN 357

Query: 385 ALLNACRIHRNDE 397
           A+++   IH + E
Sbjct: 358 AIISCHGIHGHAE 370


>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
 gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 154/492 (31%), Positives = 253/492 (51%), Gaps = 34/492 (6%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML   +  + +T +  LKACS     ++ ++IH  + +     D+F+QN L+ FYV    
Sbjct: 118 MLENGAFADKFTLSLVLKACSRVGLVKEGMQIHGLLKKLEFGSDLFLQNCLISFYVKCGC 177

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSS 120
           +  A Q+F+ +   D VS+ ++I G  K G    A  +F  I ++     L+S  S    
Sbjct: 178 LVRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLARVVFDCIPLE--ERNLISWNSLIRG 235

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
               + G  +       + E ++I  N+++D  ++CG +     LF +MP R++VSW  M
Sbjct: 236 YAQSEDGILVAWQLFAKMPERDLISWNSMIDGCVKCGRMEDAQGLFDRMPNRDIVSWANM 295

Query: 181 I-------------------------------GGYAERGFCKEAVSVFQEMEKTKEAEPN 209
           I                               GGY + G+C EA+ +F  M+       +
Sbjct: 296 IDGYAKNGRVDIARSLFDEMPERDVVAYNAMMGGYVQNGYCMEALGIFYGMQSDGNFLLD 355

Query: 210 EATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF 269
            ATL+  LSA + +  +  G  +H +I      S+   +G A+I+MY KCG +  A+ VF
Sbjct: 356 NATLLIALSAIAQLGHIDKGVAIHRFIE-EIGFSLDGRLGVALIDMYSKCGSIENAMMVF 414

Query: 270 NMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVD 329
             +  K    W+ +I GLA++G G  A      M    V PDD+TFI L++AC H GLV 
Sbjct: 415 ENIKEKSVDHWNAIIGGLAIHGLGELAFDFLMEMERMRVEPDDITFIGLLNACGHAGLVK 474

Query: 330 QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           +G++ F+ M  V+++ P++QHY C+VD+ GRAG +EEA+ F+ EMP E    +W +LL+A
Sbjct: 475 EGMMCFELMRRVHKVEPKLQHYGCMVDILGRAGHIEEAKNFVEEMPFEPNDVIWRSLLSA 534

Query: 390 CRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKT 449
           C+ H +  +   + ++L+     S  ++ L SN +AG  +W D  K+R  +++  LKK  
Sbjct: 535 CKTHESFNVGQPVAENLMRLDSPSPSSYVLASNMYAGLGKWNDVRKVRAMMKQKNLKKIP 594

Query: 450 GCSWIEVNPSIF 461
           GCSWIE+   ++
Sbjct: 595 GCSWIELEGHVY 606


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 142/439 (32%), Positives = 263/439 (59%), Gaps = 12/439 (2%)

Query: 28  KALEIHAHVIEYG-HLHDIFIQNSLLHFYVTVKD---IFSAHQIFNSVVFP-DVVSWTTI 82
           K  +IHA  I +G  + D  +   L+ + V++     +  AH++F+ +  P +V  W T+
Sbjct: 32  KLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTL 91

Query: 83  ISGLSKCGFHKEAIDMFCGIDV----KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNL 138
           I G ++ G    A  ++  + V    +P+ +T   ++ A +++   +LG+ IH+  +R+ 
Sbjct: 92  IRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSG 151

Query: 139 NENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQ 198
             + I + N++L  Y  CG +AS   +F KMP++++V+W ++I G+AE G  +EA++++ 
Sbjct: 152 FGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYT 211

Query: 199 EMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVK 258
           EM  +K  +P+  T+V++LSAC+ I AL+ GK VH Y+  +  L+ +    N ++++Y +
Sbjct: 212 EM-NSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM-IKVGLTRNLHSSNVLLDLYAR 269

Query: 259 CGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM-IINAVFPDDVTFIA 317
           CG V  A  +F+ +  K+ +SW+++I GLA+NG G++A++LF  M     + P ++TF+ 
Sbjct: 270 CGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVG 329

Query: 318 LISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIE 377
           ++ ACSH G+V +G   F+ M   Y+I P+++H+ C+VD+  RAG +++A  +I+ MP++
Sbjct: 330 ILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQ 389

Query: 378 AEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIR 437
               +W  LL AC +H + ++ +  R  ++  +    G + L+SN +A   RW D  KIR
Sbjct: 390 PNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIR 449

Query: 438 DEIRRMGLKKKTGCSWIEV 456
            ++ R G+KK  G S +EV
Sbjct: 450 KQMLRDGVKKVPGHSLVEV 468



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 153/285 (53%), Gaps = 4/285 (1%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +T+   +KA +     +    IH+ VI  G    I++QNSLLH Y    D+ SA+++F+ 
Sbjct: 122 HTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDK 181

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLG 127
           +   D+V+W ++I+G ++ G  +EA+ ++  ++   +KP+  T+VS+LSAC+ + +  LG
Sbjct: 182 MPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLG 241

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           K +H + ++     N+   N +LD Y RCG +     LF +M  +N VSWT++I G A  
Sbjct: 242 KRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVN 301

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           GF KEA+ +F+ ME T+   P E T V +L ACS    +  G      +   Y +     
Sbjct: 302 GFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIE 361

Query: 248 VGNAVINMYVKCGDVGIAIQ-VFNMLAYKDKISWSTVISGLAMNG 291
               ++++  + G V  A + + +M    + + W T++    ++G
Sbjct: 362 HFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHG 406


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 148/460 (32%), Positives = 250/460 (54%), Gaps = 12/460 (2%)

Query: 9    NHYTFTQALKACSLAHPHQK---ALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAH 65
            + +T    L+ACS     +      ++H + I+ G ++D F+  +L+  Y     +  A 
Sbjct: 994  DQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAE 1053

Query: 66   QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNANTLVSVLSACSS 120
             + +     D+ SW  I+ G  K    ++A++ F      GI +  +  TL + + A   
Sbjct: 1054 FLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPI--DEITLATAIKASGC 1111

Query: 121  LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
            L++ K GK I A++++    N++ + + +LD YI+CG + +   LF ++ + + V+WTTM
Sbjct: 1112 LINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTM 1171

Query: 181  IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
            I GY E G    A+SV+  M +    +P+E T   ++ A S ++AL  GK +H+ +  + 
Sbjct: 1172 ISGYIENGDEDHALSVYHLM-RVSGVQPDEYTFATLIKASSCLTALEQGKQIHANV-VKL 1229

Query: 241  DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
            D S+ + VG ++++MY KCG V  A +VF  +  +  + W+ ++ GLA +G   +AL LF
Sbjct: 1230 DYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLF 1289

Query: 301  SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
              M  N + PD VTFI ++SACSH GL  +    F AM   Y I P+++HY+C+VD  GR
Sbjct: 1290 RTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGR 1349

Query: 361  AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
            AG ++EAE  I  MP +A  S++ ALL ACR   + E   R+   L+         + L+
Sbjct: 1350 AGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLL 1409

Query: 421  SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            SN +A + +W+D    R+ ++   +KK  G SWI+V   +
Sbjct: 1410 SNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKV 1449



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 194/382 (50%), Gaps = 15/382 (3%)

Query: 31   EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
            +IHA VI+      + + NSL++ Y     +++A + F +    D++SW T+IS  ++  
Sbjct: 915  QIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNN 974

Query: 91   FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK---LGKAIHAHSLRNLNENNII 144
               EAI  F  +    +KP+  TL SVL ACS+    +   LG  +H ++++    N+  
Sbjct: 975  LEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSF 1034

Query: 145  LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
            +  A++D Y + G +    +L       ++ SW  ++ GY +    ++A+  F  M +  
Sbjct: 1035 VSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMG 1094

Query: 205  EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
                +E TL   + A   +  L  GK + +Y + +   +    V + V++MY+KCGD+  
Sbjct: 1095 -IPIDEITLATAIKASGCLINLKQGKQIQAY-AIKLGFNNDLWVSSGVLDMYIKCGDMPN 1152

Query: 265  AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
            A+++F  ++  D+++W+T+ISG   NG    AL ++ LM ++ V PD+ TF  LI A S 
Sbjct: 1153 ALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSC 1212

Query: 325  GGLVDQGLILFKAMSTVYEIVPQMQHY--ACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
               ++QG  +    + V ++   + H+    +VDMY + G +++A    R+M +  +   
Sbjct: 1213 LTALEQGKQIH---ANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVR-KVVF 1268

Query: 383  WGALLNACRIHRN-DEMFDRIR 403
            W A+L     H + DE  +  R
Sbjct: 1269 WNAMLLGLAQHGHVDEALNLFR 1290



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 155/326 (47%), Gaps = 20/326 (6%)

Query: 72   VFP-----DVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVS 123
            +FP     ++ +W   ++     G    AID F  +    +  ++ TLV +LSA      
Sbjct: 850  MFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADD 909

Query: 124  HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
              LG+ IHA  +++     + + N++++ Y + G + +    F+  P+ +++SW TMI  
Sbjct: 910  LDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISS 969

Query: 184  YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA---LSFGKYVHSYISTRY 240
            YA+     EA+  F+++ +    +P++ TL +VL ACS+       + G  VH Y + + 
Sbjct: 970  YAQNNLEMEAICTFRDLLRDG-LKPDQFTLASVLRACSTGDEGEYFTLGSQVHVY-AIKC 1027

Query: 241  DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
             +   + V  A+I++Y K G +  A  + +     D  SW+ ++ G   +   R+AL+ F
Sbjct: 1028 GIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHF 1087

Query: 301  SLMIINAVFPDDVTFIALISACSHGGLVD--QGLILFKAMSTVYEIVPQMQHYACVVDMY 358
            SLM    +  D++T    I A   G L++  QG  + +A +        +   + V+DMY
Sbjct: 1088 SLMHEMGIPIDEITLATAIKAS--GCLINLKQGKQI-QAYAIKLGFNNDLWVSSGVLDMY 1144

Query: 359  GRAGLLEEAEAFIREM--PIEAEWSV 382
             + G +  A     E+  P E  W+ 
Sbjct: 1145 IKCGDMPNALELFGEISRPDEVAWTT 1170



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 158/369 (42%), Gaps = 39/369 (10%)

Query: 27   QKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGL 86
            Q +  +H + ++ G   D+F+  +L++ Y     +  A  +F+ +   D V W  ++   
Sbjct: 734  QVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAY 793

Query: 87   SKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNI 143
             +  F  EA+  F         P+ + L  V+   +S VS+   +  HA  ++       
Sbjct: 794  VENSFQDEALRFFSAFHRSGFXPDFSNLHCVIGGVNSDVSNN--RKRHAEQVKAY----- 846

Query: 144  ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
                A+  F    GS              N+ +W   +  +   G    A+  F+ + ++
Sbjct: 847  ----AMKMFPFDQGS--------------NIFAWNKKLTEFLHAGQIVAAIDCFKTLLRS 888

Query: 204  KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
                 +  TLV +LSA      L  G+ +H+ +  +   +    V N+++NMY K G V 
Sbjct: 889  TIGH-DSVTLVIILSAAVGADDLDLGEQIHALV-IKSSFAPVVPVSNSLMNMYSKAGVVY 946

Query: 264  IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
             A + F      D ISW+T+IS  A N    +A+  F  ++ + + PD  T  +++ ACS
Sbjct: 947  AAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACS 1006

Query: 324  HGGLVDQG-LILFKAMSTVYE----IVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEA 378
             G   D+G      +   VY     I+        ++D+Y + G ++EAE F+     + 
Sbjct: 1007 TG---DEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAE-FLLHGKYDF 1062

Query: 379  EWSVWGALL 387
            + + W A++
Sbjct: 1063 DLASWNAIM 1071



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 73/367 (19%), Positives = 152/367 (41%), Gaps = 41/367 (11%)

Query: 33  HAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC--- 89
           HA ++  G L D ++ N+L+  Y     + SA Q+F+     D+V+W +I++  ++    
Sbjct: 634 HARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADS 693

Query: 90  -------GFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN 142
                  GF    +    G  +       +  L   S  V  ++ + +H ++++   E +
Sbjct: 694 SYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFV--QVSETVHGYAVKIGFELD 751

Query: 143 IILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202
           + +  A+++ Y + G +     LF KMP+R+ V W  M+  Y E  F  EA+  F    +
Sbjct: 752 LFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHR 811

Query: 203 TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 262
           +    P+ + L  V+   +S                  D+S +       +  Y      
Sbjct: 812 SG-FXPDFSNLHCVIGGVNS------------------DVSNNRKRHAEQVKAY------ 846

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
             A+++F      +  +W+  ++     G    A+  F  ++ + +  D VT + ++SA 
Sbjct: 847 --AMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAA 904

Query: 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
                +D G  +  A+       P +     +++MY +AG++  AE      P E +   
Sbjct: 905 VGADDLDLGEQI-HALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSP-ELDLIS 962

Query: 383 WGALLNA 389
           W  ++++
Sbjct: 963 WNTMISS 969



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 87/191 (45%), Gaps = 5/191 (2%)

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           KLGK  HA  + + +  +  L N ++  Y +CGSL S   +F K   R++V+W +++  Y
Sbjct: 628 KLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAY 687

Query: 185 AE--RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA--LSFGKYVHSYISTRY 240
           A+      +  +  F+     +E   +   L         + +  +   + VH Y + + 
Sbjct: 688 AQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGY-AVKI 746

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
              +   V  A++N+Y K G VG A  +F+ +  +D + W+ ++     N    +AL+ F
Sbjct: 747 GFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFF 806

Query: 301 SLMIINAVFPD 311
           S    +   PD
Sbjct: 807 SAFHRSGFXPD 817


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 148/460 (32%), Positives = 250/460 (54%), Gaps = 12/460 (2%)

Query: 9    NHYTFTQALKACSLAHPHQK---ALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAH 65
            + +T    L+ACS     +      ++H + I+ G ++D F+  +L+  Y     +  A 
Sbjct: 994  DQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAE 1053

Query: 66   QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNANTLVSVLSACSS 120
             + +     D+ SW  I+ G  K    ++A++ F      GI +  +  TL + + A   
Sbjct: 1054 FLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPI--DEITLATAIKASGC 1111

Query: 121  LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
            L++ K GK I A++++    N++ + + +LD YI+CG + +   LF ++ + + V+WTTM
Sbjct: 1112 LINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTM 1171

Query: 181  IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
            I GY E G    A+SV+  M +    +P+E T   ++ A S ++AL  GK +H+ +  + 
Sbjct: 1172 ISGYIENGDEDHALSVYHLM-RVSGVQPDEYTFATLIKASSCLTALEQGKQIHANV-VKL 1229

Query: 241  DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
            D S+ + VG ++++MY KCG V  A +VF  +  +  + W+ ++ GLA +G   +AL LF
Sbjct: 1230 DYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLF 1289

Query: 301  SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
              M  N + PD VTFI ++SACSH GL  +    F AM   Y I P+++HY+C+VD  GR
Sbjct: 1290 RTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGR 1349

Query: 361  AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
            AG ++EAE  I  MP +A  S++ ALL ACR   + E   R+   L+         + L+
Sbjct: 1350 AGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLL 1409

Query: 421  SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            SN +A + +W+D    R+ ++   +KK  G SWI+V   +
Sbjct: 1410 SNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKV 1449



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 194/382 (50%), Gaps = 15/382 (3%)

Query: 31   EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
            +IHA VI+      + + NSL++ Y     +++A + F +    D++SW T+IS  ++  
Sbjct: 915  QIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNN 974

Query: 91   FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK---LGKAIHAHSLRNLNENNII 144
               EAI  F  +    +KP+  TL SVL ACS+    +   LG  +H ++++    N+  
Sbjct: 975  LEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSF 1034

Query: 145  LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
            +  A++D Y + G +    +L       ++ SW  ++ GY +    ++A+  F  M +  
Sbjct: 1035 VSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMG 1094

Query: 205  EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
                +E TL   + A   +  L  GK + +Y + +   +    V + V++MY+KCGD+  
Sbjct: 1095 -IPIDEITLATAIKASGCLINLKQGKQIQAY-AIKLGFNNDLWVSSGVLDMYIKCGDMPN 1152

Query: 265  AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
            A+++F  ++  D+++W+T+ISG   NG    AL ++ LM ++ V PD+ TF  LI A S 
Sbjct: 1153 ALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSC 1212

Query: 325  GGLVDQGLILFKAMSTVYEIVPQMQHY--ACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
               ++QG  +    + V ++   + H+    +VDMY + G +++A    R+M +  +   
Sbjct: 1213 LTALEQGKQIH---ANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVR-KVVF 1268

Query: 383  WGALLNACRIHRN-DEMFDRIR 403
            W A+L     H + DE  +  R
Sbjct: 1269 WNAMLLGLAQHGHVDEALNLFR 1290



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 155/326 (47%), Gaps = 20/326 (6%)

Query: 72   VFP-----DVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVS 123
            +FP     ++ +W   ++     G    AID F  +    +  ++ TLV +LSA      
Sbjct: 850  MFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADD 909

Query: 124  HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
              LG+ IHA  +++     + + N++++ Y + G + +    F+  P+ +++SW TMI  
Sbjct: 910  LDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISS 969

Query: 184  YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA---LSFGKYVHSYISTRY 240
            YA+     EA+  F+++ +    +P++ TL +VL ACS+       + G  VH Y + + 
Sbjct: 970  YAQNNLEMEAICTFRDLLRDG-LKPDQFTLASVLRACSTGDEGEYFTLGSQVHVY-AIKC 1027

Query: 241  DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
             +   + V  A+I++Y K G +  A  + +     D  SW+ ++ G   +   R+AL+ F
Sbjct: 1028 GIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHF 1087

Query: 301  SLMIINAVFPDDVTFIALISACSHGGLVD--QGLILFKAMSTVYEIVPQMQHYACVVDMY 358
            SLM    +  D++T    I A   G L++  QG  + +A +        +   + V+DMY
Sbjct: 1088 SLMHEMGIPIDEITLATAIKAS--GCLINLKQGKQI-QAYAIKLGFNNDLWVSSGVLDMY 1144

Query: 359  GRAGLLEEAEAFIREM--PIEAEWSV 382
             + G +  A     E+  P E  W+ 
Sbjct: 1145 IKCGDMPNALELFGEISRPDEVAWTT 1170



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 158/369 (42%), Gaps = 39/369 (10%)

Query: 27   QKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGL 86
            Q +  +H + ++ G   D+F+  +L++ Y     +  A  +F+ +   D V W  ++   
Sbjct: 734  QVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAY 793

Query: 87   SKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNI 143
             +  F  EA+  F         P+ + L  V+   +S VS+   +  HA  ++       
Sbjct: 794  VENSFQDEALRFFSAFHRSGFFPDFSNLHCVIGGVNSDVSNN--RKRHAEQVKAY----- 846

Query: 144  ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
                A+  F    GS              N+ +W   +  +   G    A+  F+ + ++
Sbjct: 847  ----AMKMFPFDQGS--------------NIFAWNKKLTEFLHAGQIVAAIDCFKTLLRS 888

Query: 204  KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
                 +  TLV +LSA      L  G+ +H+ +  +   +    V N+++NMY K G V 
Sbjct: 889  TIGH-DSVTLVIILSAAVGADDLDLGEQIHALV-IKSSFAPVVPVSNSLMNMYSKAGVVY 946

Query: 264  IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
             A + F      D ISW+T+IS  A N    +A+  F  ++ + + PD  T  +++ ACS
Sbjct: 947  AAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACS 1006

Query: 324  HGGLVDQG-LILFKAMSTVYE----IVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEA 378
             G   D+G      +   VY     I+        ++D+Y + G ++EAE F+     + 
Sbjct: 1007 TG---DEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAE-FLLHGKYDF 1062

Query: 379  EWSVWGALL 387
            + + W A++
Sbjct: 1063 DLASWNAIM 1071



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/367 (19%), Positives = 152/367 (41%), Gaps = 41/367 (11%)

Query: 33  HAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC--- 89
           HA ++  G L D ++ N+L+  Y     + SA Q+F+     D+V+W +I++  ++    
Sbjct: 634 HARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADS 693

Query: 90  -------GFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN 142
                  GF    +    G  +       +  L   S  V  ++ + +H ++++   E +
Sbjct: 694 SYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFV--QVSETVHGYAVKIGFELD 751

Query: 143 IILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202
           + +  A+++ Y + G +     LF KMP+R+ V W  M+  Y E  F  EA+  F    +
Sbjct: 752 LFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHR 811

Query: 203 TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 262
           +    P+ + L  V+   +S                  D+S +       +  Y      
Sbjct: 812 SG-FFPDFSNLHCVIGGVNS------------------DVSNNRKRHAEQVKAY------ 846

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
             A+++F      +  +W+  ++     G    A+  F  ++ + +  D VT + ++SA 
Sbjct: 847 --AMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAA 904

Query: 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
                +D G  +  A+       P +     +++MY +AG++  AE      P E +   
Sbjct: 905 VGADDLDLGEQI-HALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSP-ELDLIS 962

Query: 383 WGALLNA 389
           W  ++++
Sbjct: 963 WNTMISS 969



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 88/191 (46%), Gaps = 5/191 (2%)

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           KLGK  HA  + + +  +  L N ++  Y +CGSL S   +F K   R++V+W +++  Y
Sbjct: 628 KLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAY 687

Query: 185 AE--RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA--LSFGKYVHSYISTRY 240
           A+      +  +  F+     +E   +   L         + +  +   + VH Y + + 
Sbjct: 688 AQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGY-AVKI 746

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
              +   V  A++N+Y K G VG A  +F+ +  +D + W+ ++     N    +AL+ F
Sbjct: 747 GFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFF 806

Query: 301 SLMIINAVFPD 311
           S    +  FPD
Sbjct: 807 SAFHRSGFFPD 817


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 145/451 (32%), Positives = 251/451 (55%), Gaps = 6/451 (1%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           +   LK C++     +   +HAH+++    HDI + N+LL+ Y     +  A ++F  + 
Sbjct: 63  YNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMP 122

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKA 129
             D V+WTT+ISG S+     +A+  F  +      PN  TL SV+ A ++      G  
Sbjct: 123 QRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQ 182

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           +H   ++   ++N+ + +A+LD Y R G +     +F  +  RN VSW  +I G+A R  
Sbjct: 183 LHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSG 242

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
            ++A+ +FQ M +     P+  +  ++  ACSS   L  GK+VH+Y+    +  V+   G
Sbjct: 243 TEKALELFQGMLRDG-FRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVA-FAG 300

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
           N +++MY K G +  A ++F+ LA +D +SW+++++  A +G G++A+  F  M    + 
Sbjct: 301 NTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIR 360

Query: 310 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEA 369
           P++++F+++++ACSH GL+D+G   ++ M     IVP+  HY  VVD+ GRAG L  A  
Sbjct: 361 PNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALR 419

Query: 370 FIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADR 429
           FI EMPIE   ++W ALLNACR+H+N E+     + +        G   ++ N +A   R
Sbjct: 420 FIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGR 479

Query: 430 WEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           W D  ++R +++  G+KK+  CSW+E+  +I
Sbjct: 480 WNDAARVRKKMKESGVKKEPACSWVEIENAI 510



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 11/169 (6%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +H+++     ACS     ++   +HA++I+ G     F  N+LL  Y     I  A +IF
Sbjct: 261 SHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIF 320

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHK 125
           + +   DVVSW ++++  ++ GF KEA+  F     + ++PN  + +SVL+ACS   S  
Sbjct: 321 DRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSH--SGL 378

Query: 126 LGKAIHAHSLRNLNENNIILDN----AILDFYIRCGSLASCGYLFVKMP 170
           L +  H + L  + ++ I+ +      ++D   R G L        +MP
Sbjct: 379 LDEGWHYYEL--MKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMP 425


>gi|356557599|ref|XP_003547103.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31070,
           mitochondrial-like [Glycine max]
          Length = 601

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 151/430 (35%), Positives = 252/430 (58%), Gaps = 7/430 (1%)

Query: 31  EIHAHVIEYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
           +IHA V+    +   +F+  +L+ FY    D   A ++F+ +   +VVSWTT+ISG    
Sbjct: 173 QIHALVVVNERIGQSMFLSTALVDFYFRCGDSLMALRVFDGMEVKNVVSWTTMISGCIAH 232

Query: 90  GFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
             + EA   F  +  +   PN  T +++LSAC+     K GK IH ++ R+  E+     
Sbjct: 233 QDYDEAFACFRAMQAEGVCPNRVTSIALLSACAEPGFVKHGKEIHGYAFRHGFESCPSFS 292

Query: 147 NAILDFYIRCGSLASCGYL-FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
           +A+++ Y +CG       L F     R+VV W+++IG ++ RG   +A+ +F +M +T+E
Sbjct: 293 SALVNMYCQCGEPMHLAELIFEGSSFRDVVLWSSIIGSFSRRGDSFKALKLFNKM-RTEE 351

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
            EPN  TL+ V+SAC+++S+L  G  +H YI  ++    S  VGNA+INMY KCG +  +
Sbjct: 352 IEPNYVTLLAVISACTNLSSLKHGCGLHGYI-FKFGFCFSISVGNALINMYAKCGCLNGS 410

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
            ++F  +  +D ++WS++IS   ++GCG QALQ+F  M    V PD +TF+A++SAC+H 
Sbjct: 411 RKMFLEMPNRDNVTWSSLISAYGLHGCGEQALQIFYEMNERGVKPDAITFLAVLSACNHA 470

Query: 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 385
           GLV +G  +FK +    EI   ++HYAC+VD+ GR+G LE A    R MP++    +W +
Sbjct: 471 GLVAEGQRIFKQVRADCEIPLTIEHYACLVDLLGRSGKLEYALEIRRTMPMKPSARIWSS 530

Query: 386 LLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445
           L++AC++H   ++ + +   L+  +  + G + L++  +A    W DT ++R+ ++   L
Sbjct: 531 LVSACKLHGRLDIAEMLAPQLIRSEPNNAGNYTLLNTIYAEHGHWLDTEQVREAMKLQKL 590

Query: 446 KKKTGCSWIE 455
           KK  G S IE
Sbjct: 591 KKCYGFSRIE 600



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 118/416 (28%), Positives = 209/416 (50%), Gaps = 14/416 (3%)

Query: 4   CPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFS 63
           C  S   +     +KA S A  H    ++H   ++ G   +  + NS++  Y    D+ S
Sbjct: 45  CGHSSISFFLPSVIKASSSAQCHTFGTQLHCLALKTGSHSETVVSNSIITMYFKFSDVGS 104

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 120
           A Q+F+++   D ++W ++I+G    G+ +EA++    +    + P    L SV+S C  
Sbjct: 105 ARQVFDTMPHRDPITWNSLINGYLHNGYLEEALEALNDVYLLGLVPKPELLASVVSMCGR 164

Query: 121 LVSHKLGKAIHAHSLRNLNE---NNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
            +  K+G+ IHA  L  +NE    ++ L  A++DFY RCG       +F  M  +NVVSW
Sbjct: 165 RMGSKIGRQIHA--LVVVNERIGQSMFLSTALVDFYFRCGDSLMALRVFDGMEVKNVVSW 222

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
           TTMI G        EA + F+ M+  +   PN  T + +LSAC+    +  GK +H Y +
Sbjct: 223 TTMISGCIAHQDYDEAFACFRAMQ-AEGVCPNRVTSIALLSACAEPGFVKHGKEIHGY-A 280

Query: 238 TRYDLSVSNLVGNAVINMYVKCGD-VGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
            R+         +A++NMY +CG+ + +A  +F   +++D + WS++I   +  G   +A
Sbjct: 281 FRHGFESCPSFSSALVNMYCQCGEPMHLAELIFEGSSFRDVVLWSSIIGSFSRRGDSFKA 340

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
           L+LF+ M    + P+ VT +A+ISAC++   +  G  L   +   +     +     +++
Sbjct: 341 LKLFNKMRTEEIEPNYVTLLAVISACTNLSSLKHGCGLHGYIFK-FGFCFSISVGNALIN 399

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           MY + G L  +     EMP   +   W +L++A  +H   E   +I  ++ N++GV
Sbjct: 400 MYAKCGCLNGSRKMFLEMP-NRDNVTWSSLISAYGLHGCGEQALQIFYEM-NERGV 453



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 166/354 (46%), Gaps = 13/354 (3%)

Query: 70  SVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANT---LVSVLSACSSLVSHKL 126
           + V P   S +  I      G + + + +F  + +  +++    L SV+ A SS   H  
Sbjct: 10  TTVAPTCSSPSNQIKSFLSKGLYHQTLQLFSELHLCGHSSISFFLPSVIKASSSAQCHTF 69

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           G  +H  +L+  + +  ++ N+I+  Y +   + S   +F  MP R+ ++W ++I GY  
Sbjct: 70  GTQLHCLALKTGSHSETVVSNSIITMYFKFSDVGSARQVFDTMPHRDPITWNSLINGYLH 129

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
            G+ +EA+    ++       P    L +V+S C        G+ +H+ +     +  S 
Sbjct: 130 NGYLEEALEALNDVYLLGLV-PKPELLASVVSMCGRRMGSKIGRQIHALVVVNERIGQSM 188

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            +  A+++ Y +CGD  +A++VF+ +  K+ +SW+T+ISG   +    +A   F  M   
Sbjct: 189 FLSTALVDFYFRCGDSLMALRVFDGMEVKNVVSWTTMISGCIAHQDYDEAFACFRAMQAE 248

Query: 307 AVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
            V P+ VT IAL+SAC+  G V  G  I   A    +E  P     + +V+MY + G   
Sbjct: 249 GVCPNRVTSIALLSACAEPGFVKHGKEIHGYAFRHGFESCPSFS--SALVNMYCQCGEPM 306

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRND-----EMFDRIRQDLVNKKGVSV 414
                I E     +  +W +++ +    R D     ++F+++R + +    V++
Sbjct: 307 HLAELIFEGSSFRDVVLWSSIIGSFS-RRGDSFKALKLFNKMRTEEIEPNYVTL 359


>gi|6729034|gb|AAF27030.1|AC009177_20 hypothetical protein [Arabidopsis thaliana]
          Length = 548

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 153/459 (33%), Positives = 247/459 (53%), Gaps = 15/459 (3%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    S +++TF   LKACS     Q    +H  V++ G   ++++   LLH Y+   +
Sbjct: 98  MLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGE 157

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           +    ++F  +   +VV+W ++ISG        +AI+ F  +    VK N   +V +L A
Sbjct: 158 VNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVA 217

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C           +           N+IL  +++D Y +CG L +  YLF  MP+R +VSW
Sbjct: 218 CGRCFDPYFQSKVGF---------NVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSW 268

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
            ++I GY++ G  +EA+ +F +M     A P++ T ++V+ A         G+ +H+Y+S
Sbjct: 269 NSIITGYSQNGDAEEALCMFLDMLDLGIA-PDKVTFLSVIRASMIQGCSQLGQSIHAYVS 327

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
               +  + +V  A++NMY K GD   A + F  L  KD I+W+ VI GLA +G G +AL
Sbjct: 328 KTGFVKDAAIVC-ALVNMYAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEAL 386

Query: 298 QLFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
            +F  M       PD +T++ ++ ACSH GLV++G   F  M  ++ + P ++HY C+VD
Sbjct: 387 SIFQRMQEKGNATPDGITYLGVLYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVD 446

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGT 416
           +  RAG  EEAE  ++ MP++   ++WGALLN C IH N E+ DRIR  +   + +  G 
Sbjct: 447 ILSRAGRFEEAERLVKTMPVKPNVNIWGALLNGCDIHENLELTDRIRSMVAEPEELGSGI 506

Query: 417 FALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
           + L+SN +A A RW D   IR+ ++   + K  G S +E
Sbjct: 507 YVLLSNIYAKAGRWADVKLIRESMKSKRVDKVLGHSSVE 545



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 172/366 (46%), Gaps = 28/366 (7%)

Query: 25  PHQKALEIHAHVIEYGHLHDIFIQNS----------LLHFYVTVKDIFS---AHQIFNSV 71
           P    LE    ++E   LH + I++S          L+ F  T  +  +   A  +F S+
Sbjct: 8   PILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESI 67

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGK 128
             P V  W ++I G S      +A+  +  +  K   P+  T   VL ACS L   + G 
Sbjct: 68  DCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGS 127

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H   ++   E N+ +   +L  Y+ CG +     +F  +P+ NVV+W ++I G+    
Sbjct: 128 CVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNN 187

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
              +A+  F+EM+ +   + NE  +V++L AC        G+    Y  ++   +V  ++
Sbjct: 188 RFSDAIEAFREMQ-SNGVKANETIMVDLLVAC--------GRCFDPYFQSKVGFNV--IL 236

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
             ++I+MY KCGD+  A  +F+ +  +  +SW+++I+G + NG   +AL +F  M+   +
Sbjct: 237 ATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGI 296

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD VTF+++I A    G    G  +   +S     V        +V+MY + G  E A+
Sbjct: 297 APDKVTFLSVIRASMIQGCSQLGQSIHAYVSKT-GFVKDAAIVCALVNMYAKTGDAESAK 355

Query: 369 AFIREM 374
               ++
Sbjct: 356 KAFEDL 361



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 130/289 (44%), Gaps = 19/289 (6%)

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCG 163
           +K +   ++S L  C SLV       +H   +++    N+I  + ++DF   C    +  
Sbjct: 2   MKKHYKPILSQLENCRSLVELN---QLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLS 58

Query: 164 Y---LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
           Y   +F  +   +V  W +MI GY+      +A+  +QEM + K   P+  T   VL AC
Sbjct: 59  YARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLR-KGYSPDYFTFPYVLKAC 117

Query: 221 SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
           S +  + FG  VH ++  +    V+  V   +++MY+ CG+V   ++VF  +   + ++W
Sbjct: 118 SGLRDIQFGSCVHGFV-VKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAW 176

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340
            ++ISG   N     A++ F  M  N V  ++   + L+ AC  G   D     F++   
Sbjct: 177 GSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVAC--GRCFDP---YFQSKVG 231

Query: 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
              I+        ++DMY + G L  A      MP E     W +++  
Sbjct: 232 FNVILA-----TSLIDMYAKCGDLRTARYLFDGMP-ERTLVSWNSIITG 274


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 147/459 (32%), Positives = 266/459 (57%), Gaps = 9/459 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK---DIFSAH 65
           + +T +  + AC+         ++H+  I +G   D  +   L++ Y        + +A 
Sbjct: 270 DRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAAR 329

Query: 66  QIFNSVVFPDVVSWTTIISG-LSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSL 121
           +IF+ ++  +V SWT +I+G + K G+ +EA+D+F G+    V PN  T  S L AC++L
Sbjct: 330 KIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANL 389

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
            + ++G+ +  H+++    +   + N+++  Y R G +      F  + ++N++S+ T+I
Sbjct: 390 AALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVI 449

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
             YA+    +EA+ +F E+E  +    +  T  ++LS  +SI  +  G+ +H+ +  +  
Sbjct: 450 DAYAKNLNSEEALELFNEIED-QGMGASAFTFASLLSGAASIGTIGKGEQIHARV-IKSG 507

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
           L ++  V NA+I+MY +CG++  A QVF  +  ++ ISW+++I+G A +G   QAL+LF 
Sbjct: 508 LKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFH 567

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            M+   V P+ VT+IA++SACSH GLV++G   FK+M T + ++P+M+HYAC+VD+ GR+
Sbjct: 568 KMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRS 627

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           G L EA  FI  MP +A+  VW   L ACR+H N E+     + ++ ++      + L+S
Sbjct: 628 GSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLS 687

Query: 422 NTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           N +A   +W++ + IR  ++   L K+ GCSW+EV   +
Sbjct: 688 NLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKV 726



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 111/381 (29%), Positives = 201/381 (52%), Gaps = 24/381 (6%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLH-DIFIQNSLLHFYVTVK-DIFSAHQ 66
           N Y F  A +ACS A        I   V++ G+L  D+ +   L+  +V  + D+ SA +
Sbjct: 167 NEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFK 226

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVS 123
           +F  +   + V+WT +I+ L + G+  EAID+F  +     +P+  TL  V+SAC+++  
Sbjct: 227 VFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMEL 286

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAI----LDFYIRC---GSLASCGYLFVKMPKRNVVS 176
             LG+ +H+ ++R    + + LD  +    ++ Y +C   GS+ +   +F ++   NV S
Sbjct: 287 LLLGQQLHSQAIR----HGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFS 342

Query: 177 WTTMIGGYAER-GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           WT MI GY ++ G+ +EA+ +F+ M  T    PN  T  + L AC++++AL  G+ V ++
Sbjct: 343 WTAMITGYVQKGGYDEEALDLFRGMILT-HVIPNHFTFSSTLKACANLAALRIGEQVFTH 401

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
            + +   S  N V N++I+MY + G +  A + F++L  K+ IS++TVI   A N    +
Sbjct: 402 -AVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEE 460

Query: 296 ALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC-- 353
           AL+LF+ +    +     TF +L+S  +  G + +G    +  + V +   ++    C  
Sbjct: 461 ALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGE---QIHARVIKSGLKLNQSVCNA 517

Query: 354 VVDMYGRAGLLEEAEAFIREM 374
           ++ MY R G +E A     +M
Sbjct: 518 LISMYSRCGNIESAFQVFEDM 538



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 121/261 (46%), Gaps = 12/261 (4%)

Query: 106 PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD----NAILDFYIRCGSLAS 161
           P+  T    L  C    S  +G  +H      L ++++ LD    N+++  Y +CG    
Sbjct: 64  PDLQTYSLFLKKCIRTRSFDIGTLVH----EKLTQSDLQLDSVTLNSLISLYSKCGQWEK 119

Query: 162 CGYLFVKM-PKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
              +F  M   R+++SW+ M+  +A       A+  F +M +     PNE        AC
Sbjct: 120 ATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYY-PNEYCFAAATRAC 178

Query: 221 SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKC-GDVGIAIQVFNMLAYKDKIS 279
           S+   +S G  +  ++     L     VG  +I+M+VK  GD+  A +VF  +  ++ ++
Sbjct: 179 STAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVT 238

Query: 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMS 339
           W+ +I+ L   G   +A+ LF  MI++   PD  T   +ISAC++  L+  G  L  + +
Sbjct: 239 WTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQL-HSQA 297

Query: 340 TVYEIVPQMQHYACVVDMYGR 360
             + +        C+++MY +
Sbjct: 298 IRHGLTLDRCVGCCLINMYAK 318


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 151/427 (35%), Positives = 244/427 (57%), Gaps = 36/427 (8%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 120
           A  IF+ +  P    + ++I  LS      EA+ ++  +    +KP+  T   V+ AC+ 
Sbjct: 119 AKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNE 178

Query: 121 LVSHKLGKAIHAH--------------SLRNLNEN-----------------NIILDNAI 149
                 G  +H H              SL +L  N                 +++  NA+
Sbjct: 179 SSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAM 238

Query: 150 LDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN 209
           +D Y++   +     +F +M  R+V+SW TMI GYA  G   EA+++F +M +    +P 
Sbjct: 239 IDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQM-RAVGVKPT 297

Query: 210 EATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF 269
           EAT+V++LSAC+ + AL  G ++H+YI+    + V+++VG A+++MY KCG + +A QVF
Sbjct: 298 EATVVSLLSACAHLGALDKGLHLHTYINDN-RIEVNSIVGTALVDMYAKCGKISLATQVF 356

Query: 270 NMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVD 329
           N +  KD ++W+T+I+G+A++G  ++A QLF  M    V P+D+TF+A++SACSH G+VD
Sbjct: 357 NAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVD 416

Query: 330 QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           +G  L   MS+ Y I P+++HY CV+D+  RAG LEEA   I  MP+E   S  GALL  
Sbjct: 417 EGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGG 476

Query: 390 CRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKT 449
           CRIH N E+ + + + L+N +    G + L+SN +A A +W+D  K+R+ ++  G+ K  
Sbjct: 477 CRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVP 536

Query: 450 GCSWIEV 456
           G S IE+
Sbjct: 537 GVSVIEL 543



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 159/328 (48%), Gaps = 43/328 (13%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML      +H T+   +KAC+ +      L +H HV++ G   D +I +SL+H Y   KD
Sbjct: 157 MLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKD 216

Query: 61  IFSAHQIFN-------------------------------SVVFPDVVSWTTIISGLSKC 89
           + +A Q+FN                                +V  DV+SW T+I+G + C
Sbjct: 217 LGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIC 276

Query: 90  GFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLN--ENNII 144
           G   EA+ +F     + VKP   T+VS+LSAC+ L +  L K +H H+  N N  E N I
Sbjct: 277 GKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGA--LDKGLHLHTYINDNRIEVNSI 334

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           +  A++D Y +CG ++    +F  M  ++V++W T+I G A  G  KEA  +F+EM K  
Sbjct: 335 VGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEM-KEA 393

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
             EPN+ T V +LSACS    +  G+ +   +S+ Y +         VI++  + G +  
Sbjct: 394 GVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEE 453

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGC 292
           A+++   +  +   S      G  + GC
Sbjct: 454 AMELIGTMPMEPNPS----ALGALLGGC 477


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 145/451 (32%), Positives = 251/451 (55%), Gaps = 6/451 (1%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           +   LK C++     +   +HAH+++    HDI + N+LL+ Y     +  A ++F  + 
Sbjct: 63  YNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMP 122

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKA 129
             D V+WTT+ISG S+     +A+  F  +      PN  TL SV+ A ++      G  
Sbjct: 123 QRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQ 182

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           +H   ++   ++N+ + +A+LD Y R G +     +F  +  RN VSW  +I G+A R  
Sbjct: 183 LHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSG 242

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
            ++A+ +FQ M +     P+  +  ++  ACSS   L  GK+VH+Y+    +  V+   G
Sbjct: 243 TEKALELFQGMLRDG-FRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVA-FAG 300

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
           N +++MY K G +  A ++F+ LA +D +SW+++++  A +G G++A+  F  M    + 
Sbjct: 301 NTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIR 360

Query: 310 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEA 369
           P++++F+++++ACSH GL+D+G   ++ M     IVP+  HY  VVD+ GRAG L  A  
Sbjct: 361 PNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALR 419

Query: 370 FIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADR 429
           FI EMPIE   ++W ALLNACR+H+N E+     + +        G   ++ N +A   R
Sbjct: 420 FIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGR 479

Query: 430 WEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           W D  ++R +++  G+KK+  CSW+E+  +I
Sbjct: 480 WNDAARVRKKMKESGVKKEPACSWVEIENAI 510



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 11/169 (6%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +H+++     ACS     ++   +HA++I+ G     F  N+LL  Y     I  A +IF
Sbjct: 261 SHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIF 320

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHK 125
           + +   DVVSW ++++  ++ GF KEA+  F     + ++PN  + +SVL+ACS   S  
Sbjct: 321 DRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSH--SGL 378

Query: 126 LGKAIHAHSLRNLNENNIILDN----AILDFYIRCGSLASCGYLFVKMP 170
           L +  H + L  + ++ I+ +      ++D   R G L        +MP
Sbjct: 379 LDEGWHYYEL--MKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMP 425


>gi|222636858|gb|EEE66990.1| hypothetical protein OsJ_23896 [Oryza sativa Japonica Group]
          Length = 659

 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 151/464 (32%), Positives = 252/464 (54%), Gaps = 19/464 (4%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +T+   L+AC+ A        +H H    G   ++F QN+L+  Y    D+ SA ++F+ 
Sbjct: 151 FTYPSVLRACAEARELVLGRAVHMHAAGAGMDGNLFFQNALMSMYAKCGDLASARKVFDG 210

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID-------------VKPNAN----TLVS 113
           +V  DVVSW ++IS  +  G   EA+++F  +              V+  A     TLV 
Sbjct: 211 MVQRDVVSWNSMISSYAAVGQWAEAMELFRRMRDEGTEPVGLIREMVRGGAEVDYVTLVI 270

Query: 114 VLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
            L+ACS +   +LGK IH  ++R   +    + NA++  Y RC  +     LF  +    
Sbjct: 271 GLNACSRVGWLRLGKEIHGLAVRMCCDQVESVSNALITMYARCKDMECARMLFRMLECPG 330

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
           VV+W TM+  +A     +EA S+F+EM   +  +PN  T+V  L+ C+ ++ L  G+ +H
Sbjct: 331 VVTWNTMLSSFALSDCAEEASSIFREM-ICRGVKPNYVTVVTYLALCARVANLQHGQELH 389

Query: 234 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG 293
            +I  ++      L+ N++I+MY K G + +A  VF+ +   D IS++++I+G  M G G
Sbjct: 390 GHI-VKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDCDMISYTSMIAGYGMQGKG 448

Query: 294 RQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
             AL+LF  MI + + PD +  + ++SACSH GLV +G  LF  M   Y I PQM+HY+C
Sbjct: 449 TVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVLEGEELFNKMVISYGIKPQMEHYSC 508

Query: 354 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVS 413
           ++D+Y RAGLLE+AE  +   P     ++W AL+ AC    N E+ +R  + L+  +  +
Sbjct: 509 MIDLYARAGLLEKAEEMLDHTPFPPTSTMWAALVGACHDRGNIEIGERAARKLLEMRTEN 568

Query: 414 VGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            G + L++N +A A  W++   +R  +R +G+ K  G +W ++ 
Sbjct: 569 AGHYVLIANMYAAAGCWDELATVRKLMRDLGVTKAPGLAWTDLG 612



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/289 (31%), Positives = 142/289 (49%), Gaps = 37/289 (12%)

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCG 163
           V P+  T  SVL AC+      LG+A+H H+     + N+   NA++  Y +CG LAS  
Sbjct: 146 VLPDVFTYPSVLRACAEARELVLGRAVHMHAAGAGMDGNLFFQNALMSMYAKCGDLASAR 205

Query: 164 YLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEM--EKTKE-----------AEPNE 210
            +F  M +R+VVSW +MI  YA  G   EA+ +F+ M  E T+            AE + 
Sbjct: 206 KVFDGMVQRDVVSWNSMISSYAAVGQWAEAMELFRRMRDEGTEPVGLIREMVRGGAEVDY 265

Query: 211 ATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN 270
            TLV  L+ACS +  L  GK +H  ++ R        V NA+I MY +C D+  A  +F 
Sbjct: 266 VTLVIGLNACSRVGWLRLGKEIHG-LAVRMCCDQVESVSNALITMYARCKDMECARMLFR 324

Query: 271 MLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS------- 323
           ML     ++W+T++S  A++ C  +A  +F  MI   V P+ VT +  ++ C+       
Sbjct: 325 MLECPGVVTWNTMLSSFALSDCAEEASSIFREMICRGVKPNYVTVVTYLALCARVANLQH 384

Query: 324 ----HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
               HG +V  G   FK    ++           ++DMY ++G L  A+
Sbjct: 385 GQELHGHIVKHG---FKGYRLLWN---------SLIDMYSKSGRLSVAQ 421



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 87/189 (46%), Gaps = 13/189 (6%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N+ T    L  C+     Q   E+H H++++G      + NSL+  Y     +  A  +F
Sbjct: 365 NYVTVVTYLALCARVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVF 424

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS----L 121
           +++   D++S+T++I+G    G    A+ +F  +    +KP+   +V+VLSACS     L
Sbjct: 425 DTMDDCDMISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVL 484

Query: 122 VSHKL-GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTT 179
              +L  K + ++ ++   E+     + ++D Y R G L     +    P       W  
Sbjct: 485 EGEELFNKMVISYGIKPQMEHY----SCMIDLYARAGLLEKAEEMLDHTPFPPTSTMWAA 540

Query: 180 MIGGYAERG 188
           ++G   +RG
Sbjct: 541 LVGACHDRG 549


>gi|297741017|emb|CBI31329.3| unnamed protein product [Vitis vinifera]
          Length = 753

 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 151/457 (33%), Positives = 254/457 (55%), Gaps = 26/457 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +++T+   LKAC          E+H  +            N+ L  Y ++     A ++F
Sbjct: 200 DNFTYPSVLKACGEELDLGFGKEVHESI------------NASL--YASMGMWNEAFELF 245

Query: 69  NSVVFPDV----VSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACS 119
            S+   D+    + W TI  G  + G +K A+++      CG  +  ++  L+  L ACS
Sbjct: 246 GSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHL--DSVALIIGLGACS 303

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
            +   KLGK IH+ ++R+       + NA++  Y RC  L     LF  M  +++++W +
Sbjct: 304 HIGDAKLGKEIHSFAIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLMEAKSLITWNS 363

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           +I G       +EA  + +EM      EPN  T+ +VL  C+ ++ L  GK  H Y++ R
Sbjct: 364 IISGCCHMDRSEEASFLLREM-LLFGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRR 422

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
            D     L+ NA+++MY + G V  A +VF+ML  +DK++++++I+G  M G G+ AL+L
Sbjct: 423 EDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKL 482

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
           F  M    + PD +T IA++SACSH GLV QG +LF+ M ++Y + P ++H+AC+ D++G
Sbjct: 483 FEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFG 542

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFAL 419
           RAGLL +A+  IR MP +   ++W  L+ ACRIHRN E+ +   + L+  K  + G + L
Sbjct: 543 RAGLLNKAKEIIRNMPYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVL 602

Query: 420 MSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           ++N +A A  W    K+R  +R +G++K  GC+W++V
Sbjct: 603 IANMYAAAGCWNKLAKVRIFMRDLGVRKAPGCAWVDV 639



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 159/361 (44%), Gaps = 15/361 (4%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +  +  L +C+      +  ++H H+I  G      +   L+ FY     +  AH I  +
Sbjct: 101 HPISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITEN 160

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLG 127
                   W  +IS   + GF ++A+  +  +    ++P+  T  SVL AC   +    G
Sbjct: 161 SNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFG 220

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           K +H     +L  +  + + A   F          G ++ +  + N++ W T+ GGY   
Sbjct: 221 KEVHESINASLYASMGMWNEAFELF----------GSMWAEDIELNIIIWNTIAGGYLRT 270

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G  K A+ +  +M K   +  +   L+  L ACS I     GK +HS+ + R      + 
Sbjct: 271 GNYKGALELLSQMRKCG-SHLDSVALIIGLGACSHIGDAKLGKEIHSF-AIRSCFGEVDT 328

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V NA+I MY +C D+  A  +F ++  K  I+W+++ISG        +A  L   M++  
Sbjct: 329 VKNALITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLLFG 388

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           + P+ VT  +++  C+    +  G      M+   +    +  +  +VDMY R+G + EA
Sbjct: 389 IEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEA 448

Query: 368 E 368
            
Sbjct: 449 R 449



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 81/175 (46%), Gaps = 14/175 (8%)

Query: 156 CGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA---VSVFQEMEKTKEAEPNEAT 212
           C +L S    F  +    + S  T +  +  RG   +A   VS+ +    +   +     
Sbjct: 43  CNALESAQETFTSVDASMIDSLLTSLKEFTSRGNLLDAFKTVSLIRLHASSASQDLIVHP 102

Query: 213 LVNVLSACSSISALSFGKYVHSYIST----RYDLSVSNLVG-NAVINMYVKCGDVGIAIQ 267
           + ++LS+C+ + +L+ G+ +H +I +    ++ + V  LV   +  N+ V   D  +  +
Sbjct: 103 ISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLV---DAHVITE 159

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
             N+L       W+ +IS    NG  ++AL  +  M+   + PD+ T+ +++ AC
Sbjct: 160 NSNIL---HPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKAC 211


>gi|413946224|gb|AFW78873.1| hypothetical protein ZEAMMB73_227843 [Zea mays]
          Length = 778

 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 241/428 (56%), Gaps = 7/428 (1%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           E+H + I      DIFI N+L+  Y        A  IF ++   +VVSW  +I+ L++ G
Sbjct: 342 ELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFENIEVRNVVSWNAMIANLTQNG 401

Query: 91  FHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
              EA  +   +      PN+ TLV++L ACS + S K+GK IHA S+R    +++ + N
Sbjct: 402 AEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIRRSLMSDLFVSN 461

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           A++D Y +CG L    Y+F +  +++ VS+ T+I GY++   C E++ +FQ+M +    E
Sbjct: 462 ALIDVYAKCGQLNLARYIFDR-SEKDGVSYNTLIVGYSQSQCCFESLHLFQQM-RLAGIE 519

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
            +  + +  LSACS++SA   GK +H  +  R  L     + N+++++Y K G +  A +
Sbjct: 520 HDAVSFMGCLSACSNLSAFKQGKEIHGVLVKRL-LDSHPFLANSLLDVYTKGGMLDTASK 578

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           +FN +  KD  SW+T+I G  M+G    A +LF LM  + +  D V++IA++S CSHGGL
Sbjct: 579 IFNRITQKDVASWNTMILGYGMHGQIDVAFELFDLMKDDGIEYDHVSYIAVLSVCSHGGL 638

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           VD+G   F  M     I PQ  HYAC+VD+ GRAG L E+   IR MP  A   VWGALL
Sbjct: 639 VDRGKKYFSQM-IAQNIKPQQMHYACMVDLLGRAGQLSESAEIIRNMPFRANSDVWGALL 697

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
            +CRIH + E+     + L   K  + G + L+ N ++ +  W + N ++  ++   ++K
Sbjct: 698 GSCRIHGDIELARLAAEHLFELKPENSGYYTLLRNMYSESGMWNEANGVKKLMKSRKVQK 757

Query: 448 KTGCSWIE 455
               SW++
Sbjct: 758 NPAYSWVQ 765



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 123/424 (29%), Positives = 212/424 (50%), Gaps = 20/424 (4%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+      N  +    L AC         L +H  V+++G    + + N+L+  Y    D
Sbjct: 211 MMRSGVPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVVNLGNALVDMYGKFGD 270

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           + S+  +FN +   + VSW + I   +  GFH++ ++MF  +   DV P + TL S+L A
Sbjct: 271 LESSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSVTLSSLLPA 330

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
              L    LGK +H +S+R   E++I + N ++D Y + G       +F  +  RNVVSW
Sbjct: 331 LVDLGYFHLGKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFENIEVRNVVSW 390

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
             MI    + G   EA  +  EM+K  E  PN  TLVN+L ACS ++++  GK +H++ S
Sbjct: 391 NAMIANLTQNGAEAEAFRLVIEMQKNGEC-PNSFTLVNLLPACSRVASVKMGKQIHAW-S 448

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            R  L     V NA+I++Y KCG + +A  +F+  + KD +S++T+I G + + C  ++L
Sbjct: 449 IRRSLMSDLFVSNALIDVYAKCGQLNLARYIFDR-SEKDGVSYNTLIVGYSQSQCCFESL 507

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL----ILFKAMSTVYEIVPQMQHYAC 353
            LF  M +  +  D V+F+  +SACS+     QG     +L K +   +  +        
Sbjct: 508 HLFQQMRLAGIEHDAVSFMGCLSACSNLSAFKQGKEIHGVLVKRLLDSHPFLAN-----S 562

Query: 354 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQDLVNK 409
           ++D+Y + G+L+ A      +  + + + W  ++    +H       E+FD ++ D +  
Sbjct: 563 LLDVYTKGGMLDTASKIFNRI-TQKDVASWNTMILGYGMHGQIDVAFELFDLMKDDGIEY 621

Query: 410 KGVS 413
             VS
Sbjct: 622 DHVS 625



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 169/349 (48%), Gaps = 8/349 (2%)

Query: 24  HPHQKALEIHAHVIEYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTI 82
           HP  K  E+HA  +  G L  D+F  N+L+ FY        A ++F+ +   DVVSW ++
Sbjct: 133 HP-AKGAELHAAALRRGLLLADVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSL 191

Query: 83  ISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLN 139
           +S L   G  ++A     G+    V  N  +LVS+L AC +      G  +H   L+   
Sbjct: 192 VSALLTNGMLEDAKRAVVGMMRSGVPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGL 251

Query: 140 ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQE 199
            + + L NA++D Y + G L S  ++F  M ++N VSW + IG +A  GF ++ + +F+ 
Sbjct: 252 NSVVNLGNALVDMYGKFGDLESSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRL 311

Query: 200 MEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKC 259
           M +  +  P   TL ++L A   +     GK +H Y S R  +     + N +++MY K 
Sbjct: 312 MSE-HDVTPGSVTLSSLLPALVDLGYFHLGKELHGY-SIRRAVESDIFIANTLMDMYAKF 369

Query: 260 GDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALI 319
           G    A  +F  +  ++ +SW+ +I+ L  NG   +A +L   M  N   P+  T + L+
Sbjct: 370 GCSEKASAIFENIEVRNVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLL 429

Query: 320 SACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            ACS    V  G  +  A S    ++  +     ++D+Y + G L  A 
Sbjct: 430 PACSRVASVKMGKQI-HAWSIRRSLMSDLFVSNALIDVYAKCGQLNLAR 477


>gi|293333548|ref|NP_001170485.1| uncharacterized protein LOC100384484 [Zea mays]
 gi|238005588|gb|ACR33829.1| unknown [Zea mays]
 gi|413920755|gb|AFW60687.1| hypothetical protein ZEAMMB73_143396 [Zea mays]
          Length = 569

 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 156/451 (34%), Positives = 243/451 (53%), Gaps = 7/451 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +HYT+   L AC+ A        +H  V+ +    D F+ ++L+  Y    ++  A  +F
Sbjct: 119 DHYTYPIVLPACAAARELWLGRAVHGDVVRFALAGDGFVHSALITMYFQEGEVADAELVF 178

Query: 69  NSV--VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVS 123
                    VVSWT++++G  +  +  EA+ +F  +    V PN  TL+S L        
Sbjct: 179 AESHGSSRTVVSWTSMVAGYVQNYYFGEAVALFGTMIAEGVLPNEITLISFLPCLQGQEW 238

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
              G+ +H   +R   + NI L NA++  Y +CGS+     LF  MP R++ SW TM+  
Sbjct: 239 LDAGEMVHGFVIRLGFDANIPLANALIAMYGKCGSIPMAQTLFEGMPARSLASWNTMVAM 298

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           Y +     EA+  F+ M  T++   +  TLV+VLSAC+   AL  GK+VH  ++  + L 
Sbjct: 299 YEQHADVVEAIKFFRRM-LTEKVGFDCVTLVSVLSACARSGALQTGKWVHE-LARNHGLD 356

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
               +GN +++MY KCG++  A  VF+ L  +  +SWS +IS  A +G   +AL+LFSLM
Sbjct: 357 TDARIGNVLVDMYAKCGEIASARNVFDCLRMRSVVSWSAMISAYANHGASEEALKLFSLM 416

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
               V P+  TF A++ AC H GLV++GL  F ++ + Y++ P ++HYAC+VDM GRAG 
Sbjct: 417 KNEGVRPNSFTFTAVLVACGHSGLVEEGLKHFNSILSDYQMSPTLEHYACMVDMLGRAGR 476

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           L EA   IR M +  +  VWGA L  C++H N E+ + + +DL       V  + LMSN 
Sbjct: 477 LIEAYEIIRGMSLCPDKCVWGAFLAGCKLHGNLELAEFVARDLFQSGSNDVTFYVLMSNM 536

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           +  A   +D  ++R  ++ M L K  G S I
Sbjct: 537 YFEAGMLKDAERMRWAMKEMELNKTAGRSAI 567



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 104/416 (25%), Positives = 190/416 (45%), Gaps = 15/416 (3%)

Query: 11  YTFTQALKACSLAHP--HQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +T+ + A S + P   +  L IHA  I  G   +     SLL   V    +  A ++F
Sbjct: 17  HRYTRLITAASASSPVSLRALLPIHARAIVLGVSANPAFATSLLAG-VAPASLAYARRVF 75

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDM-----FCGIDVKPNANTLVSVLSACSSLVS 123
           ++    D   W T++   S       A  +          V P+  T   VL AC++   
Sbjct: 76  DATPVRDAYMWNTLLRAHSHSQLSHAADTLALYKRMRAAGVAPDHYTYPIVLPACAAARE 135

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKM--PKRNVVSWTTMI 181
             LG+A+H   +R     +  + +A++  Y + G +A    +F +     R VVSWT+M+
Sbjct: 136 LWLGRAVHGDVVRFALAGDGFVHSALITMYFQEGEVADAELVFAESHGSSRTVVSWTSMV 195

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
            GY +  +  EAV++F  M   +   PNE TL++ L        L  G+ VH ++  R  
Sbjct: 196 AGYVQNYYFGEAVALFGTM-IAEGVLPNEITLISFLPCLQGQEWLDAGEMVHGFV-IRLG 253

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
              +  + NA+I MY KCG + +A  +F  +  +   SW+T+++    +    +A++ F 
Sbjct: 254 FDANIPLANALIAMYGKCGSIPMAQTLFEGMPARSLASWNTMVAMYEQHADVVEAIKFFR 313

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            M+   V  D VT ++++SAC+  G +  G  + + ++  + +    +    +VDMY + 
Sbjct: 314 RMLTEKVGFDCVTLVSVLSACARSGALQTGKWVHE-LARNHGLDTDARIGNVLVDMYAKC 372

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTF 417
           G +  A      + + +  S W A+++A   H   E   ++   L+  +GV   +F
Sbjct: 373 GEIASARNVFDCLRMRSVVS-WSAMISAYANHGASEEALKLF-SLMKNEGVRPNSF 426



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 5/131 (3%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML+    ++  T    L AC+ +   Q    +H     +G   D  I N L+  Y    +
Sbjct: 315 MLTEKVGFDCVTLVSVLSACARSGALQTGKWVHELARNHGLDTDARIGNVLVDMYAKCGE 374

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           I SA  +F+ +    VVSW+ +IS  +  G  +EA+ +F  +    V+PN+ T  +VL A
Sbjct: 375 IASARNVFDCLRMRSVVSWSAMISAYANHGASEEALKLFSLMKNEGVRPNSFTFTAVLVA 434

Query: 118 C--SSLVSHKL 126
           C  S LV   L
Sbjct: 435 CGHSGLVEEGL 445


>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
 gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 145/453 (32%), Positives = 255/453 (56%), Gaps = 8/453 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           ++YT+   LKAC       +   +    ++ G   D+F+ N L+  Y    +   A  +F
Sbjct: 109 DNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVF 168

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
           +     D+VSW +++ G   CG  + A +MF   D  P  +  V   S        K+G+
Sbjct: 169 DGFSEKDLVSWNSMLGGYVWCGEMENAQNMF---DEMPERD--VVSWSIMIDGYGKKMGE 223

Query: 129 AIHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
              A     ++   +++  N+++D Y + G +     +F KM ++NV+SW+ MI GYA+ 
Sbjct: 224 VNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFDKMLQKNVISWSIMIDGYAQH 283

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
              KEA+++F++M   +  +P+  ++V  +SACS + AL  G+++H Y+  R  + +  +
Sbjct: 284 RDSKEALNLFRQM-LCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMK-RNRMLLDIV 341

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V  A+++MY+KCG    A ++FN +  ++ +SW+ +I GL MNG G++AL+ F+ M +  
Sbjct: 342 VQTALVDMYLKCGSRDEARRIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFTQMEMER 401

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           +  DD+ F+ ++ ACSH  LV +GL +F  M  VY + P+++HY C+VD+ GRAG L++ 
Sbjct: 402 IPMDDLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQI 461

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
           +  I+ MP++   ++WG+LL ACRIH+N  + + + + L   K    G + LMSN +A  
Sbjct: 462 QNIIQSMPMKPNAALWGSLLLACRIHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADV 521

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
             WE   +IR  ++   +KK  G S IEV+ ++
Sbjct: 522 GMWEGMLRIRKLMKERKMKKDIGRSVIEVDGNV 554



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 169/357 (47%), Gaps = 28/357 (7%)

Query: 30  LEIHAHVIEYGHLHDIFIQNSLLHFYVT-VKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           L+IHA +I    + D F  + LL   V+   ++  A  +F  +  P+     T++   ++
Sbjct: 28  LQIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFICNTMVKCYTE 87

Query: 89  CGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
               + A+  +  +  K    +  T   VL AC ++     G  +   +++     ++ +
Sbjct: 88  SSTPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFV 147

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            N ++  Y RCG       +F    ++++VSW +M+GGY   G  + A ++F EM +   
Sbjct: 148 VNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPER-- 205

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTR--YD-LSVSNLVG-NAVINMYVKCGD 261
                    +V+S   SI    +GK +      R  +D +   +LV  N++I+ Y K G+
Sbjct: 206 ---------DVVSW--SIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGE 254

Query: 262 VGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISA 321
           + +A ++F+ +  K+ ISWS +I G A +   ++AL LF  M+   + PD V+ +  +SA
Sbjct: 255 MEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSA 314

Query: 322 CSHGGLVDQGL---ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP 375
           CS  G +DQG    +  K    + +IV Q      +VDMY + G  +EA      MP
Sbjct: 315 CSQLGALDQGRWIHLYMKRNRMLLDIVVQ----TALVDMYLKCGSRDEARRIFNSMP 367


>gi|357126882|ref|XP_003565116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Brachypodium distachyon]
          Length = 796

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 150/471 (31%), Positives = 257/471 (54%), Gaps = 13/471 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALE--IHAHVIEYGHLHDIFIQNSLLHFYVTV 58
           M  C    N +     +K CS      + +   +H  V++ G   D+F+ ++++  Y   
Sbjct: 206 MRRCAMGLNSFALGSVIKCCSGGDGSVRGIAEAVHGCVVKAGLDTDLFLASAMVDMYAKR 265

Query: 59  KDIFSAHQIFNSVVFPDVVSWTTIISGLSK--CGFHKE----AIDMFCGID---VKPNAN 109
             +  A  +F SV+ P+VV +  +I+GL +     HKE    A+ ++  +    ++P   
Sbjct: 266 GALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVHKEVVREALSLYSELQSRGMEPTEF 325

Query: 110 TLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKM 169
           T  SV+ AC+     + GK IH   L++  + +  + +A++D Y     +      F  +
Sbjct: 326 TFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSALIDLYFNSACMEDGFRCFRSV 385

Query: 170 PKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 229
           PK++VV+WT MI G  +    + A+++F E+      +P+  T+ +V++AC+S++ +  G
Sbjct: 386 PKQDVVTWTAMISGCVQNELFERALALFHELLGVG-LKPDPFTISSVMNACASLAVVRTG 444

Query: 230 KYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAM 289
           + +  + +T+        +GN+ I+MY + G+V  AIQ F  +   D +SWS +IS  A 
Sbjct: 445 EQMQCF-ATKSGFDRFTAMGNSCIHMYARSGNVEAAIQRFQEMESHDVVSWSAIISSHAQ 503

Query: 290 NGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQ 349
           +GC RQALQ F+ M+   V P+++TF+ +++ACSHGGLVD+GL  ++ M   Y + P ++
Sbjct: 504 HGCARQALQFFNEMVGAKVVPNEITFLGVLTACSHGGLVDEGLRYYEIMKMEYGLCPTVK 563

Query: 350 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNK 409
           H  CVVD+ GRAG L +AEAFIR+     E  VW +LL +CRIHR+ E    +   ++  
Sbjct: 564 HCTCVVDLLGRAGRLADAEAFIRDSIFHDEPVVWQSLLGSCRIHRDMERGQLVADRIMEL 623

Query: 410 KGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +  S G +  + N +  A      +KIRD ++  G+KK+ G SWIE+   I
Sbjct: 624 QPASSGCYVNLYNMYLDAGELSLGSKIRDLMKERGVKKEPGLSWIELRSGI 674



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/396 (26%), Positives = 199/396 (50%), Gaps = 23/396 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +T+  AL ACS A   ++   +HA  +  G    +F+ NSL+  Y    D+  A ++F
Sbjct: 113 DRFTYAAALAACSRAGRLKEGKVVHALAVLEGLAEGVFVSNSLVSMYARCGDMGEARRVF 172

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLVS 123
           +     D VSW +++SG  + G H+E + +F     C + +  N+  L SV+  CS    
Sbjct: 173 DVTEERDDVSWNSLVSGYLRVGAHEEMLRVFALMRRCAMGL--NSFALGSVIKCCSGGDG 230

Query: 124 HKLG--KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
              G  +A+H   ++   + ++ L +A++D Y + G+L+    LF  +   NVV +  MI
Sbjct: 231 SVRGIAEAVHGCVVKAGLDTDLFLASAMVDMYAKRGALSEAVALFKSVLDPNVVVFNAMI 290

Query: 182 GGYAE------RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
            G         +   +EA+S++ E++ ++  EP E T  +V+ AC+    + FGK +H  
Sbjct: 291 AGLCRDEAAVHKEVVREALSLYSELQ-SRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQ 349

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
           +  ++     + +G+A+I++Y     +    + F  +  +D ++W+ +ISG   N    +
Sbjct: 350 V-LKHCFQGDDFIGSALIDLYFNSACMEDGFRCFRSVPKQDVVTWTAMISGCVQNELFER 408

Query: 296 ALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG--LILFKAMSTVYEIVPQMQHYAC 353
           AL LF  ++   + PD  T  ++++AC+   +V  G  +  F A  + ++    M + +C
Sbjct: 409 ALALFHELLGVGLKPDPFTISSVMNACASLAVVRTGEQMQCF-ATKSGFDRFTAMGN-SC 466

Query: 354 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
            + MY R+G +E A    +EM      S W A++++
Sbjct: 467 -IHMYARSGNVEAAIQRFQEMESHDVVS-WSAIISS 500



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 183/390 (46%), Gaps = 25/390 (6%)

Query: 28  KALEIHAHVIEYGHLHDIFIQNSLLHFY--VTVKDIFSAHQIFNSVVFPDVVSWTTIISG 85
           +A  +H H+        +F++N+LL  Y  +   D   A ++ + +   + VS+  +I  
Sbjct: 28  QAAAVHGHIARAHPSPSLFLRNTLLAAYCRLGAGDTHQARRLLDEMPRRNAVSFNLLIDA 87

Query: 86  LSKCGFHKEAIDMFC----GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNEN 141
            S+ G  +E+++ F       +VK +  T  + L+ACS     K GK +HA ++      
Sbjct: 88  YSRAGQTEESLETFLHAHRAAEVKADRFTYAAALAACSRAGRLKEGKVVHALAVLEGLAE 147

Query: 142 NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME 201
            + + N+++  Y RCG +     +F    +R+ VSW +++ GY   G  +E + VF  M 
Sbjct: 148 GVFVSNSLVSMYARCGDMGEARRVFDVTEERDDVSWNSLVSGYLRVGAHEEMLRVFALMR 207

Query: 202 KTKEAEPNEATLVNVLSACSS--ISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKC 259
           +      N   L +V+  CS    S     + VH  +  +  L     + +A+++MY K 
Sbjct: 208 RCAMG-LNSFALGSVIKCCSGGDGSVRGIAEAVHGCV-VKAGLDTDLFLASAMVDMYAKR 265

Query: 260 GDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG------RQALQLFSLMIINAVFPDDV 313
           G +  A+ +F  +   + + ++ +I+GL  +         R+AL L+S +    + P + 
Sbjct: 266 GALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVHKEVVREALSLYSELQSRGMEPTEF 325

Query: 314 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY--ACVVDMYGRAGLLEEAEAFI 371
           TF ++I AC+  G ++ G  +      V +   Q   +  + ++D+Y  +  +E+     
Sbjct: 326 TFSSVIRACNLAGDIEFGKQIH---GQVLKHCFQGDDFIGSALIDLYFNSACMEDGFRCF 382

Query: 372 REMPIEAEWSVWGALLNACRIHRNDEMFDR 401
           R +P + +   W A+++ C     +E+F+R
Sbjct: 383 RSVP-KQDVVTWTAMISGC---VQNELFER 408


>gi|345505222|gb|AEN99835.1| chlororespiratory reduction 4, partial [Lepidium sativum]
          Length = 597

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 155/492 (31%), Positives = 257/492 (52%), Gaps = 36/492 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    S + ++ +  LKACS     +  + IH  + + G   D+F+QN L+  Y+    
Sbjct: 96  MLENGVSVDKFSLSLVLKACSRLGFVKAGMXIHGFLRKTGLWSDLFLQNCLIGLYLKCGC 155

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNA-NTLVSVLSACS 119
           +  + Q+F+ +   D VS+ ++I G  KCG  + A ++F   D+ P     L+S     S
Sbjct: 156 LGYSRQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELF---DLMPKEMKNLISWNCLIS 212

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
                  G  I +     + E ++I  N+++D Y++ G +     LF  MP+R+V++W T
Sbjct: 213 GYAQTSDGVNIASKLFSEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDVMPRRDVITWAT 272

Query: 180 MIGGYAERGFCK-------------------------------EAVSVFQEMEKTKEAEP 208
           MI GYA+ GF                                 EA+ +F +MEK     P
Sbjct: 273 MIDGYAKLGFIHQAKTLFDQIPHRDVVAYNSMMAGYVQNKYHMEALELFIKMEKESHLSP 332

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           +E TLV VLSA + +  LS    +H YI  +    +   +G A+I+MY KCG +  A+ V
Sbjct: 333 DETTLVIVLSAIAQLGRLSKAMDMHFYI-VKKQFFIGGKLGVALIDMYSKCGSIQHAMLV 391

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F  L  K+   W+ +I GLA++G G  A  +   +   ++ PDD+TFI +++ACSH GLV
Sbjct: 392 FKGLENKNIDHWNAIIGGLAIHGLGGPAFDMLLQIERLSIKPDDITFIGVLNACSHSGLV 451

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
            +GL+ F+ M   ++I P++QHY C+VD+  R+G +E A+  I +MPIE    +W   L 
Sbjct: 452 KEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKILIEKMPIEPNDVIWRTFLT 511

Query: 389 ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
           AC  H+  EM + + + L+ + G +  ++ L+SN +A    W+D  ++R  ++   ++K 
Sbjct: 512 ACSHHKEFEMGELVAKHLILQAGYNPSSYVLLSNMYASCGMWKDVRRVRTMMKERKIQKI 571

Query: 449 TGCSWIEVNPSI 460
            GCSWIE++  +
Sbjct: 572 PGCSWIELDGRV 583



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 183/434 (42%), Gaps = 76/434 (17%)

Query: 15  QALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD---------IFSAH 65
           Q L +C  A    K   IHA +I  G + +  +   ++  + + +          +F  H
Sbjct: 1   QLLGSCKTADDVNK---IHARLITTGVIKNSNLTTRIVLAFASSRRQYLAEFARCVFEEH 57

Query: 66  QIFNSVVFP-----DVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
            +++    P     D   W  +I   S     + ++ +FC +    V  +  +L  VL A
Sbjct: 58  HVYS---LPYGETEDPFLWNAVIKSHSHGTDPRRSLFLFCLMLENGVSVDKFSLSLVLKA 114

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           CS L   K G  IH    +    +++ L N ++  Y++CG L     +F +MP+R+ VS+
Sbjct: 115 CSRLGFVKAGMXIHGFLRKTGLWSDLFLQNCLIGLYLKCGCLGYSRQVFDRMPQRDSVSY 174

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
            +MI GY + G  + A  +F  M K  +       L++     S  +  S G  + S + 
Sbjct: 175 NSMIDGYVKCGLIESARELFDLMPKEMK------NLISWNCLISGYAQTSDGVNIASKLF 228

Query: 238 TRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
           +  ++   +L+  N++I+ YVK G +  A  +F+++  +D I+W+T+I G A  G   QA
Sbjct: 229 S--EMPEKDLISWNSMIDGYVKHGRIEDAKDLFDVMPRRDVITWATMIDGYAKLGFIHQA 286

Query: 297 LQLF------SLMIINAVF--------------------------PDDVTFIALISACSH 324
             LF       ++  N++                           PD+ T + ++SA + 
Sbjct: 287 KTLFDQIPHRDVVAYNSMMAGYVQNKYHMEALELFIKMEKESHLSPDETTLVIVLSAIAQ 346

Query: 325 GGLVDQGLILFKAMSTVYEIVPQM-----QHYACVVDMYGRAGLLEEAEAFIREMPIEAE 379
            G       L KAM   + IV +      +    ++DMY + G ++ A    + +     
Sbjct: 347 LGR------LSKAMDMHFYIVKKQFFIGGKLGVALIDMYSKCGSIQHAMLVFKGLE-NKN 399

Query: 380 WSVWGALLNACRIH 393
              W A++    IH
Sbjct: 400 IDHWNAIIGGLAIH 413


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 147/456 (32%), Positives = 250/456 (54%), Gaps = 12/456 (2%)

Query: 12   TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
            +F   +K+CS           H     +G   D+F+ ++L+  Y     +  A  +F+ +
Sbjct: 2017 SFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEI 2076

Query: 72   VFPDVVSWTTIISGLSKC-----------GFHKEAIDMFCGIDVKPNANTLVSVLSACSS 120
               +VVSWT++I+G  +             F +E  ++  G +V  ++  +VSVLSACS 
Sbjct: 2077 PLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSR 2136

Query: 121  LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
            +    + + +H   ++   + +I + N ++D Y +CG       +F  M +++ +SW +M
Sbjct: 2137 VSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSM 2196

Query: 181  IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
            I  YA+ G   EA+ VF  M +      N  TL  VL AC+   AL  GK +H  +  + 
Sbjct: 2197 IAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQV-IKM 2255

Query: 241  DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
            DL  +  VG ++I+MY KCG V +A + F+ +  K+  SW+ +++G  M+G  ++AL +F
Sbjct: 2256 DLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIF 2315

Query: 301  SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
              M+   V P+ +TF+++++ACSH GLV++G   F AM   Y+I P ++HY C+VD++GR
Sbjct: 2316 YKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGR 2375

Query: 361  AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
            AG L EA   I+ M ++ ++ VWG+LL ACRIH+N ++ +   Q L      + G + L+
Sbjct: 2376 AGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLL 2435

Query: 421  SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
            SN +A A RW D  ++R  ++   L K  G S +E+
Sbjct: 2436 SNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVEL 2471



 Score =  195 bits (495), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 117/379 (30%), Positives = 195/379 (51%), Gaps = 38/379 (10%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           +IHA +I  G  +D  +   L+H Y T   I  A  +F  +  P   +W  II   +  G
Sbjct: 45  QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTING 104

Query: 91  FHKEAI----DMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
             ++A+    +M C   +  +  T   V+ AC++ +S  LGK +H   ++     ++ + 
Sbjct: 105 LSEQALMLYKNMVCQ-GIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQ 163

Query: 147 NAILDFYIRCG-------------------------SLASCGYL------FVKMPKRNVV 175
           N ++DFY +CG                          L SCG L      F ++P +NVV
Sbjct: 164 NNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVV 223

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           SWT MI GY      +EA+ +F+ M+  +   PNE T+V+++ AC+ +  L+ G+ +H Y
Sbjct: 224 SWTAMINGYIRNQQPEEALELFKRMQ-AENIFPNEYTMVSLIKACTEMGILTLGRGIHDY 282

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
            + +  + +   +G A+I+MY KCG +  AI+VF  +  K   +W+++I+ L ++G G++
Sbjct: 283 -AIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQE 341

Query: 296 ALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVV 355
           AL LFS M    V PD +TFI ++ AC H   V +G   F  M+  Y I P  +HY C+ 
Sbjct: 342 ALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMT 401

Query: 356 DMYGRAGLLEEAEAFIREM 374
           ++Y R+  L+EA    +E+
Sbjct: 402 ELYARSNNLDEAFKSTKEV 420



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 178/343 (51%), Gaps = 25/343 (7%)

Query: 75   DVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIH 131
            +V SW ++I+ L++ G   EA+  F  +    + P  ++    + +CS+L     G+  H
Sbjct: 1979 NVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSH 2038

Query: 132  AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
              +     E ++ + +A++D Y +CG L     LF ++P RNVVSWT+MI GY +     
Sbjct: 2039 QQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQAD 2098

Query: 192  EAVSVFQE-MEKTKEAEP------NEATLVNVLSACSSISALSFGKYVHSYISTR-YDLS 243
             A+ +F++ +E+  E E       +   +V+VLSACS +S     + VH ++  + +D S
Sbjct: 2099 NALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGS 2158

Query: 244  VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
            +   VGN +++ Y KCG   ++ +VF+ +  KD ISW+++I+  A +G   +AL++F  M
Sbjct: 2159 IG--VGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGM 2216

Query: 304  IIN-AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV----VDMY 358
            + +  V  + VT  A++ AC+H G +  G  +   +     I   +++  CV    +DMY
Sbjct: 2217 VRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQV-----IKMDLEYNVCVGTSIIDMY 2271

Query: 359  GRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFD 400
             + G +E A+     M  E     W A++    +H R  E  D
Sbjct: 2272 CKCGRVEMAKKTFDRMK-EKNVKSWTAMVAGYGMHGRAKEALD 2313



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 137/298 (45%), Gaps = 37/298 (12%)

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           + IHA  +R+   N+ +L   ++  Y   G +A    LF ++      +W  +I      
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G  ++A+ +++ M   +    ++ T   V+ AC++  ++  GK VH  +  +Y  S    
Sbjct: 104 GLSEQALMLYKNM-VCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSL-IKYGFSGDVF 161

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGL-------------------- 287
           V N +I+ Y KCG    A++VF  +  ++ +SW+TVISGL                    
Sbjct: 162 VQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKN 221

Query: 288 ------AMNGCGR-----QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFK 336
                  +NG  R     +AL+LF  M    +FP++ T ++LI AC+  G++  G  +  
Sbjct: 222 VVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHD 281

Query: 337 -AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
            A+    EI   +     ++DMY + G +++A      MP ++    W +++ +  +H
Sbjct: 282 YAIKNCIEIGVYLG--TALIDMYSKCGSIKDAIEVFETMPRKS-LPTWNSMITSLGVH 336



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 86/185 (46%), Gaps = 13/185 (7%)

Query: 8    YNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
            YN  T +  L AC+ A   +    IH  VI+    +++ +  S++  Y     +  A + 
Sbjct: 2224 YNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKT 2283

Query: 68   FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS--SLV 122
            F+ +   +V SWT +++G    G  KEA+D+F  +    VKPN  T VSVL+ACS   LV
Sbjct: 2284 FDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLV 2343

Query: 123  S---HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWT 178
                H      H + +    E  I     ++D + R G L     L  +M  K + V W 
Sbjct: 2344 EEGWHWFNAMKHKYDI----EPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWG 2399

Query: 179  TMIGG 183
            +++G 
Sbjct: 2400 SLLGA 2404


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 159/461 (34%), Positives = 250/461 (54%), Gaps = 42/461 (9%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    S +  TF   LK+ +          +H  ++++G   D F++ SL+  YV V++
Sbjct: 131 MLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFDSFVRVSLVDMYVKVEE 190

Query: 61  IFSAHQIFN----SVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLS 116
           + SA ++F+    SV    V+ W  +I G  + G   +A ++F   D  P  +T      
Sbjct: 191 LGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELF---DSMPKKDT------ 241

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
                     G                   N++++ +++ G +     LFVKMP++NVVS
Sbjct: 242 ----------GSW-----------------NSLINGFMKMGDMGRAKELFVKMPEKNVVS 274

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           WTTM+ G+++ G  ++A+  F  M + + A PN+ T+V+ LSAC+ I AL  G  +H+Y+
Sbjct: 275 WTTMVNGFSQNGDPEKALETFFCMLE-EGARPNDYTIVSALSACAKIGALDAGLRIHNYL 333

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
           S      ++ ++G A+++MY KCG++  A +VF+    K  + WS +I G A++G  R+A
Sbjct: 334 SGN-GFKLNLVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKA 392

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
           LQ F  M      PD V F+A+++ACSH G V++GL  F  M   Y I P M+HY  VVD
Sbjct: 393 LQYFEWMKFTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVD 452

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGT 416
           M GRAG L+EA  FIR MPI  ++ VWGAL  ACR H+N EM +   + L+  +    G+
Sbjct: 453 MLGRAGRLDEALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGS 512

Query: 417 FALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +  +SN +A   RW+D  ++R  +R  G  K  G S+IEV+
Sbjct: 513 YVFLSNAYASVGRWDDAERVRVSMRDHGAHKDPGWSFIEVD 553


>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
          Length = 634

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 149/457 (32%), Positives = 250/457 (54%), Gaps = 7/457 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +TF  A KA +         +IHA  ++ G + D+F+  S    Y   +    A ++F
Sbjct: 57  NDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLF 116

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLVSHK 125
           + +   ++ +W   IS     G  +EAI+ F     ID  PN+ T  + L+ACS  +   
Sbjct: 117 DEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLN 176

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LG  +H   LR+  + ++ + N ++DFY +C  + S   +F +M  +N VSW +++  Y 
Sbjct: 177 LGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYV 236

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +     E  SV     +    E ++  + +VLSAC+ ++ L  G+ +H++ + +  +  +
Sbjct: 237 Q-NHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAH-AVKACVERT 294

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             VG+A+++MY KCG +  + Q F+ +  K+ ++ +++I G A  G    AL LF  M  
Sbjct: 295 IFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAP 354

Query: 306 NAV--FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
                 P+ +TF++L+SACS  G V+ G+ +F +M + Y I P  +HY+C+VDM GRAG+
Sbjct: 355 RGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGM 414

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           +E A  FI++MPI+   SVWGAL NACR+H   ++     ++L        G   L+SNT
Sbjct: 415 VERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNT 474

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           FA A RW + N +R+E++ +G+KK  G SWI V   +
Sbjct: 475 FAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQV 511



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 150/320 (46%), Gaps = 14/320 (4%)

Query: 63  SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 119
           SA  +       +VVSWT++ISGL++ G    A+  F  +    V PN  T      A +
Sbjct: 10  SARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVA 69

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
           SL     GK IHA +++     ++ +  +  D Y +         LF ++P+RN+ +W  
Sbjct: 70  SLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNA 129

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-ST 238
            I      G  +EA+  F E  +  +  PN  T    L+ACS    L+ G  +H  +  +
Sbjct: 130 FISNSVTDGRPREAIEAFIEFRRI-DGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRS 188

Query: 239 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQ 298
            +D  VS  V N +I+ Y KC  +  +  +F  +  K+ +SW ++++    N    +A  
Sbjct: 189 GFDTDVS--VCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASV 246

Query: 299 LFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM--STVYEIVPQMQHY-ACVV 355
           L+     + V   D    +++SAC+  G+   GL L +++    V   V +     + +V
Sbjct: 247 LYLRSRKDIVETSDFMISSVLSACA--GMA--GLELGRSIHAHAVKACVERTIFVGSALV 302

Query: 356 DMYGRAGLLEEAEAFIREMP 375
           DMYG+ G +E++E    EMP
Sbjct: 303 DMYGKCGCIEDSEQAFDEMP 322



 Score = 45.1 bits (105), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 32/149 (21%)

Query: 255 MYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVT 314
           MY K      A  V  +   ++ +SW+++ISGLA NG    AL  F  M    V P+D T
Sbjct: 1   MYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFT 60

Query: 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVV---------------DMYG 359
           F      C+           FKA++++   V   Q +A  V               DMY 
Sbjct: 61  F-----PCA-----------FKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYC 104

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLN 388
           +  L ++A     E+P E     W A ++
Sbjct: 105 KTRLRDDARKLFDEIP-ERNLETWNAFIS 132


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 132/415 (31%), Positives = 249/415 (60%), Gaps = 5/415 (1%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI- 102
           ++ + N+++   +  K +  A ++F  +   D ++WTT+++G ++ G   EA+++F  + 
Sbjct: 205 NVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMR 264

Query: 103 --DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLA 160
              +  +  T  S+L+AC +L + + GK IHA+ +R   ++N+ + +A++D Y +C S+ 
Sbjct: 265 FQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIK 324

Query: 161 SCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
               +F +M  +N++SWT +I GY + G  +EAV VF EM++    +P++ TL +V+S+C
Sbjct: 325 LAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDG-IDPDDYTLGSVISSC 383

Query: 221 SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
           +++++L  G   H  ++    L     V NA++ +Y KCG +  A ++F+ +++ D++SW
Sbjct: 384 ANLASLEEGAQFHC-LALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSW 442

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340
           + ++SG A  G  ++ + LF  M+   V PD VTFI ++SACS  G V++G   F +M  
Sbjct: 443 TALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQK 502

Query: 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFD 400
            + IVP   HY C++D+Y R+G L+EAE FI++MP+  +   WG LL+ACR+  + E+  
Sbjct: 503 DHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGK 562

Query: 401 RIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
              ++L+     +  ++ L+ +  A   +W +  ++R  +R   +KK+ GCSWI+
Sbjct: 563 WAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIK 617



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 207/415 (49%), Gaps = 54/415 (13%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI- 102
           ++F  N+LL      + +     +F S+   D+VS+  +I+G S  G H +A+ ++  + 
Sbjct: 71  NLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALL 130

Query: 103 ----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR---------------------- 136
                V+P+  T+ +++ A S+L    LGK  H   LR                      
Sbjct: 131 QADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSL 190

Query: 137 ---------NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
                     ++  N+++ N ++   +RC  +     LF  M  R+ ++WTTM+ G+ + 
Sbjct: 191 VGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQN 250

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSN 246
           G   EA+ +F+ M + +    ++ T  ++L+AC ++SAL  GK +H+Y I TRYD +V  
Sbjct: 251 GLESEALEIFRRM-RFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNV-- 307

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            VG+A+++MY KC  + +A  VF  +  K+ ISW+ +I G   NGC  +A+++FS M  +
Sbjct: 308 FVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRD 367

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV----VDMYGRAG 362
            + PDD T  ++IS+C++   +++G     A      +V  + HY  V    V +YG+ G
Sbjct: 368 GIDPDDYTLGSVISSCANLASLEEG-----AQFHCLALVSGLMHYITVSNALVTLYGKCG 422

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNA----CRIHRNDEMFDRIRQDLVNKKGVS 413
            +E+A     EM    + S W AL++      R     ++F+++    V   GV+
Sbjct: 423 SIEDAHRLFDEMSFHDQVS-WTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVT 476



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 152/290 (52%), Gaps = 11/290 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YTF   L AC      ++  +IHA++I   +  ++F+ ++L+  Y   + I  A  +F
Sbjct: 271 DQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVF 330

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNANTLVSVLSACSSLVS 123
             +   +++SWT +I G  + G  +EA+ +F      GID  P+  TL SV+S+C++L S
Sbjct: 331 RRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGID--PDDYTLGSVISSCANLAS 388

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            + G   H  +L +   + I + NA++  Y +CGS+     LF +M   + VSWT ++ G
Sbjct: 389 LEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSG 448

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGK-YVHSYISTRYDL 242
           YA+ G  KE + +F++M   K  +P+  T + VLSACS    +  G+ Y HS       +
Sbjct: 449 YAQFGRAKETIDLFEKM-LAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIV 507

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDKISWSTVISGLAMNG 291
            + +     +I++Y + G +  A + +  M  + D I W T++S   + G
Sbjct: 508 PIDDHY-TCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRG 556


>gi|125540362|gb|EAY86757.1| hypothetical protein OsI_08137 [Oryza sativa Indica Group]
          Length = 493

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 147/444 (33%), Positives = 234/444 (52%), Gaps = 39/444 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +H + + +L  CS    H  A  +H+  +  GH  D+++ N+    Y    D+ SA ++F
Sbjct: 70  DHLSLSFSLHPCSRLPSHPVASVVHSLAVRLGHARDVYVVNAAASAYFAAADVASAERLF 129

Query: 69  N--SVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKL 126
           +  S    DVV+WTT+++G +  G  + A   F   D  P                    
Sbjct: 130 SEASRDVADVVTWTTMVTGHANAGDVERARWFF---DAMP-------------------- 166

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
                        E N++  N +L  Y R G L     LF +MP RN  +W +MI G  +
Sbjct: 167 -------------EKNVVSWNTMLGAYARAGMLPKARKLFDRMPSRNAATWGSMITGLLQ 213

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
              C+EA+ VF +M       PNE  LV+ +SAC+ +  +  G +VH Y     + ++S 
Sbjct: 214 SDHCEEALRVFSDMVACGVV-PNEPALVSTVSACTQLRWMEHGTWVHGYAERELNGAMSA 272

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
           ++  A+++MY KCG +  A++VF  +  ++  SW+++I+GLAMNG  RQAL LF  M + 
Sbjct: 273 VLATAIVDMYGKCGSIRDAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQLA 332

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
            V P+D+TFI L+SACSH GLVD+G  LF  M   + I P  +HY  +VD+ GR+G + E
Sbjct: 333 GVRPNDITFIGLLSACSHSGLVDEGRWLFYKMVNHFGIQPVPEHYGLMVDLLGRSGHVRE 392

Query: 367 AEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAG 426
           A  F++ MP+E    +WGAL  AC+IH   E+ + + + L+  +      + L+SN +A 
Sbjct: 393 AVDFVKSMPVEPHPGLWGALAGACKIHGEVELGEEVAKKLIELEPQHGSRYILLSNIYAT 452

Query: 427 ADRWEDTNKIRDEIRRMGLKKKTG 450
           ++RW+D   +R  ++   + K TG
Sbjct: 453 SNRWDDMANVRRILKDRKVPKGTG 476



 Score = 45.8 bits (107), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 4/123 (3%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHV-IEYGHLHDIFIQNSLLHFYVTVK 59
           M++C    N       + AC+     +    +H +   E        +  +++  Y    
Sbjct: 227 MVACGVVPNEPALVSTVSACTQLRWMEHGTWVHGYAERELNGAMSAVLATAIVDMYGKCG 286

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLS 116
            I  A ++F ++   ++ SW ++I+GL+  G  ++A+ +F  +    V+PN  T + +LS
Sbjct: 287 SIRDAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQLAGVRPNDITFIGLLS 346

Query: 117 ACS 119
           ACS
Sbjct: 347 ACS 349


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  268 bits (686), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 155/454 (34%), Positives = 260/454 (57%), Gaps = 11/454 (2%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV- 71
           F   +K C+       A ++H  VI+ G   D+ I+ +L+  Y    +I  A ++F  + 
Sbjct: 297 FATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMH 356

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              +VVSWT IISG  + G    A+++FC +    V+PN  T  ++L+A +++   +   
Sbjct: 357 GVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSPSQ--- 413

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IHA  ++   EN+  +  A+ D Y + G       +F  + ++++V+W+ M+ GYA+ G
Sbjct: 414 -IHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMG 472

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA-LSFGKYVHSYISTRYDLSVSNL 247
             + AV +F ++ K +  EPNE T  +VL+AC++ +A +  GK  HS  S +   S +  
Sbjct: 473 DIEGAVKIFLQLAK-EGVEPNEFTFSSVLNACAAPTASVEQGKQFHS-CSIKSGFSNALC 530

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V +A++ MY K G++  A +VF     +D +SW+++ISG A +GCG+++L++F  M    
Sbjct: 531 VSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKN 590

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           +  D +TFI +ISAC+H GLV++G   F  M   Y IVP M+HY+C+VD+Y RAG+LE+A
Sbjct: 591 LELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKA 650

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
              I +MP  A  ++W  LL ACR+H N ++ +   + L++ +      + L+SN +A A
Sbjct: 651 MDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATA 710

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
             W++  K+R  +    +KK+ G SWIEV    F
Sbjct: 711 GNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTF 744



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 107/415 (25%), Positives = 207/415 (49%), Gaps = 19/415 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +TF   L   +     +K +++H  VI+ G    IF+ NS+++ Y     +  A  +F
Sbjct: 192 NPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVF 251

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           +S+   + VSW ++I+G    G   EA ++F  +    VK       +V+  C+++    
Sbjct: 252 DSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMS 311

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK-RNVVSWTTMIGGY 184
             K +H   ++N ++ ++ +  A++  Y +C  +     LF  M   +NVVSWT +I GY
Sbjct: 312 FAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGY 371

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
            + G    A+++F +M + +   PN  T   +L+A +++S       V   + T Y+ S 
Sbjct: 372 VQNGRTDRAMNLFCQMRR-EGVRPNHFTYSTILTANAAVSPSQIHALV---VKTNYENSP 427

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           S  VG A+ + Y K GD   A ++F ++  KD ++WS ++SG A  G    A+++F  + 
Sbjct: 428 S--VGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLA 485

Query: 305 INAVFPDDVTFIALISAC-SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
              V P++ TF ++++AC +    V+QG   F + S        +   + +V MY + G 
Sbjct: 486 KEGVEPNEFTFSSVLNACAAPTASVEQGK-QFHSCSIKSGFSNALCVSSALVTMYAKRGN 544

Query: 364 LEEA-EAFIREMPIEAEWSVWGALLNACRIH----RNDEMFDRIRQDLVNKKGVS 413
           +E A E F R+  ++ +   W ++++    H    ++ ++F+ +R   +   G++
Sbjct: 545 IESANEVFKRQ--VDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGIT 597



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 186/380 (48%), Gaps = 18/380 (4%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           LK C          ++H   I+ G + D+ +  SL+  Y+  + +    ++F+ +   +V
Sbjct: 99  LKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNV 158

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAH 133
           VSWT++++G  + G +++A+ +F  +    +KPN  T  +VL   ++  + + G  +H  
Sbjct: 159 VSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTM 218

Query: 134 SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
            +++  ++ I + N++++ Y +   ++    +F  M  RN VSW +MI G+   G   EA
Sbjct: 219 VIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEA 278

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI---STRYDLSVSNLVGN 250
             +F  M + +  +  +     V+  C++I  +SF K +H  +    + +DL++      
Sbjct: 279 FELFYRM-RLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIK----T 333

Query: 251 AVINMYVKCGDVGIAIQVFNML-AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
           A++  Y KC ++  A ++F M+   ++ +SW+ +ISG   NG   +A+ LF  M    V 
Sbjct: 334 ALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVR 393

Query: 310 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEA 369
           P+  T+  +++A      V    I    + T YE  P +     + D Y + G   EA A
Sbjct: 394 PNHFTYSTILTA---NAAVSPSQIHALVVKTNYENSPSVG--TALSDSYSKIGDANEA-A 447

Query: 370 FIREMPIEAEWSVWGALLNA 389
            I E+  E +   W A+L+ 
Sbjct: 448 KIFELIDEKDIVAWSAMLSG 467



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 136/264 (51%), Gaps = 5/264 (1%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 120
           + Q+F+      +     ++   S+   +KEA+++F G+       + ++L  VL  C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           L    +GK +H   ++     ++ +  +++D Y++  S+     +F +M  +NVVSWT++
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           + GY + G  ++A+ +F +M+  +  +PN  T   VL   ++  A+  G  VH+ +  + 
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQ-LEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMV-IKS 222

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
            L  +  VGN+++NMY K   V  A  VF+ +  ++ +SW+++I+G   NG   +A +LF
Sbjct: 223 GLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELF 282

Query: 301 SLMIINAVFPDDVTFIALISACSH 324
             M +  V      F  +I  C++
Sbjct: 283 YRMRLEGVKLTQTIFATVIKLCAN 306



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 123/250 (49%), Gaps = 22/250 (8%)

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNE-ATLVNVLSACSSI 223
           LF + P++ +     ++  ++     KEA+++F  + ++    P + ++L  VL  C  +
Sbjct: 48  LFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRS--GSPTDGSSLSCVLKVCGCL 105

Query: 224 SALSFGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWST 282
                GK VH   I   +   VS  VG ++++MY+K   V    +VF+ +  K+ +SW++
Sbjct: 106 FDRIVGKQVHCQCIKCGFVEDVS--VGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTS 163

Query: 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG-----LILFKA 337
           +++G   NG   QAL+LFS M +  + P+  TF A++   +  G V++G     +++   
Sbjct: 164 LLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSG 223

Query: 338 MSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND- 396
           + +   +   M      V+MY ++ ++ +A+A    M      S W +++     +  D 
Sbjct: 224 LDSTIFVGNSM------VNMYSKSLMVSDAKAVFDSMENRNAVS-WNSMIAGFVTNGLDL 276

Query: 397 ---EMFDRIR 403
              E+F R+R
Sbjct: 277 EAFELFYRMR 286


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  268 bits (686), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 148/455 (32%), Positives = 251/455 (55%), Gaps = 5/455 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L AC      +   E+H + I +G  +D  + N  +  Y     +  A ++F
Sbjct: 235 NEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVF 294

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
            S+    V SW  +I G ++ G  ++A++++  +    + P+  T+ S+L A + L S +
Sbjct: 295 YSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLR 354

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK +H   LR+  E +  +  ++L  YI CG  +S   LF  M +++ VSW  MI GY+
Sbjct: 355 YGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYS 414

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G  ++A+ +F+++  +   +P++  +V+VL ACS  SAL  GK  H Y + +  L   
Sbjct: 415 QNGLPEDALILFRKL-VSDGFQPSDIAVVSVLGACSQQSALRLGKETHCY-ALKALLMED 472

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V  + I+MY K G +  +  VF+ L  KD  SW+ +I+   ++G G ++++LF  M  
Sbjct: 473 VFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRK 532

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
               PD  TFI +++ CSH GLV++GL  F  M   + I P+++HYACV+DM GRAG L+
Sbjct: 533 VGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLD 592

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           +A   + EMP + +  VW +LL+ CR     E+   + + L+  +  +V  +  +SN +A
Sbjct: 593 DALRLVHEMPEQPDSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYA 652

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           G+ RW+D  ++R  I+ +GL+K  GCSWIE+   +
Sbjct: 653 GSGRWDDVRRVRQMIKDIGLQKDAGCSWIELGGKV 687



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 111/321 (34%), Positives = 179/321 (55%), Gaps = 6/321 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +++TF   +KAC+ +        IH  VI+ G L D+F+ N+L+  Y     + +A ++F
Sbjct: 30  DNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVF 89

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI-----DVKPNANTLVSVLSACSSLVS 123
           + +   ++VSW +IISG S+ GF K+  DM   +      + P+  TLV+VL  C+  V 
Sbjct: 90  HYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVD 149

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            ++G  IH  +++     ++ ++N+++D Y +CG L     LF K  ++N VSW TMIGG
Sbjct: 150 VQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGG 209

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
              +G+  EA ++F+EM+  ++ E NE T++N+L AC  IS L   K +H Y S R+   
Sbjct: 210 LCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGY-SIRHGFQ 268

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
              LV N  +  Y KCG +  A +VF  +  K   SW+ +I G A NG  R+AL L+  M
Sbjct: 269 YDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQM 328

Query: 304 IINAVFPDDVTFIALISACSH 324
             + + PD  T  +L+ A +H
Sbjct: 329 TYSGLVPDWFTIGSLLLASAH 349



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 4/179 (2%)

Query: 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNA 251
           +A+ +F ++    E   +  T   V+ AC+       G+ +H  +  +  L +   VGNA
Sbjct: 13  DAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMV-IKMGLLLDVFVGNA 71

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII--NAVF 309
           +I MY K G V  A++VF+ +  ++ +SW+++ISG + NG  +    +   M+     + 
Sbjct: 72  LIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLL 131

Query: 310 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
           PD  T + ++  C+    V  G I    ++    +   ++    +VDMY + G L EA+
Sbjct: 132 PDIATLVTVLPVCAREVDVQMG-IRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQ 189


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  268 bits (686), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 150/477 (31%), Positives = 255/477 (53%), Gaps = 27/477 (5%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIF-- 62
           P S    +   ALK+C+       A  +HA  I  G   D F  N+LL+  + +      
Sbjct: 44  PRSSVPASLPAALKSCAGLGLCTLAASLHALAIRSGSFADRFTANALLNLCIKLPGFHHP 103

Query: 63  ------------------SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI-- 102
                             S  ++F+ ++  D VSW T+I G ++   H+EA+ M   +  
Sbjct: 104 FGTNGPSGEGGLESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWR 163

Query: 103 -DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLAS 161
               P+  TL +VL   +     K G  +H ++++N  +N++ + ++++D Y  C  +  
Sbjct: 164 DGFMPDTFTLSTVLPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDY 223

Query: 162 CGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221
              +F      + V W +M+ GYA+ G  +EA+ +F+ M +     P   T  +++ A  
Sbjct: 224 SMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAG-VRPVPVTFSSLIPAFG 282

Query: 222 SISALSFGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
           ++S L  GK +H+Y I  R++ ++   + +++I+MY KCG+V IA +VFN +   D +SW
Sbjct: 283 NLSLLRLGKQLHAYLIRARFNDNI--FISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSW 340

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340
           + +I G A++G   +A  LF  M +  V P+ +TF+A+++ACSH GLVD G   F +MS 
Sbjct: 341 TAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSN 400

Query: 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFD 400
            Y  VP ++H A + D  GRAG L+EA  FI EM I+   SVW  LL ACR+H+N  + +
Sbjct: 401 QYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAE 460

Query: 401 RIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            + + +   +  S+G+  ++SN ++ + RW +  ++R  +R  G+KK+  CSWIEV 
Sbjct: 461 EVAKKIFELEPKSMGSHVILSNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVK 517



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 139/285 (48%), Gaps = 31/285 (10%)

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGI--DVKPNAN---TLVSVLSACSSLVSHKLG 127
           FP   SW   I   +  G    AI +F  +   V P ++   +L + L +C+ L    L 
Sbjct: 11  FPP--SWAYQIRMAASQGQFLHAISLFLQMRASVAPRSSVPASLPAALKSCAGLGLCTLA 68

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRC---------------GSLASCGY-----LFV 167
            ++HA ++R+ +  +    NA+L+  I+                G L S  Y     +F 
Sbjct: 69  ASLHALAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFD 128

Query: 168 KMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 227
           +M +R+ VSW T+I G AE    +EA+S+ +EM +     P+  TL  VL   +  + + 
Sbjct: 129 EMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFM-PDTFTLSTVLPIFAECADIK 187

Query: 228 FGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
            G  VH Y I   +D  V   VG+++I+MY  C  +  +++VF+  +  D + W+++++G
Sbjct: 188 RGMVVHGYAIKNGFDNDV--FVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAG 245

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
            A NG   +AL +F  M+   V P  VTF +LI A  +  L+  G
Sbjct: 246 YAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLG 290


>gi|297607519|ref|NP_001060096.2| Os07g0578800 [Oryza sativa Japonica Group]
 gi|255677918|dbj|BAF22010.2| Os07g0578800 [Oryza sativa Japonica Group]
          Length = 967

 Score =  268 bits (686), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 150/477 (31%), Positives = 255/477 (53%), Gaps = 27/477 (5%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIF-- 62
           P S    +   ALK+C+       A  +HA  I  G   D F  N+LL+  + +      
Sbjct: 361 PRSSVPASLPAALKSCAGLGLCTLAASLHALAIRSGSFADRFTANALLNLCIKLPGFHHP 420

Query: 63  ------------------SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI-- 102
                             S  ++F+ ++  D VSW T+I G ++   H+EA+ M   +  
Sbjct: 421 FGTNGPSGEGGLESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWR 480

Query: 103 -DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLAS 161
               P+  TL +VL   +     K G  +H ++++N  +N++ + ++++D Y  C  +  
Sbjct: 481 DGFMPDTFTLSTVLPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDY 540

Query: 162 CGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221
              +F      + V W +M+ GYA+ G  +EA+ +F+ M +     P   T  +++ A  
Sbjct: 541 SMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAG-VRPVPVTFSSLIPAFG 599

Query: 222 SISALSFGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
           ++S L  GK +H+Y I  R++ ++   + +++I+MY KCG+V IA +VFN +   D +SW
Sbjct: 600 NLSLLRLGKQLHAYLIRARFNDNI--FISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSW 657

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340
           + +I G A++G   +A  LF  M +  V P+ +TF+A+++ACSH GLVD G   F +MS 
Sbjct: 658 TAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSN 717

Query: 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFD 400
            Y  VP ++H A + D  GRAG L+EA  FI EM I+   SVW  LL ACR+H+N  + +
Sbjct: 718 QYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAE 777

Query: 401 RIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            + + +   +  S+G+  ++SN ++ + RW +  ++R  +R  G+KK+  CSWIEV 
Sbjct: 778 EVAKKIFELEPKSMGSHVILSNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVK 834



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 139/285 (48%), Gaps = 31/285 (10%)

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGI--DVKPNAN---TLVSVLSACSSLVSHKLG 127
           FP   SW   I   +  G    AI +F  +   V P ++   +L + L +C+ L    L 
Sbjct: 328 FPP--SWAYQIRMAASQGQFLHAISLFLQMRASVAPRSSVPASLPAALKSCAGLGLCTLA 385

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRC---------------GSLASCGY-----LFV 167
            ++HA ++R+ +  +    NA+L+  I+                G L S  Y     +F 
Sbjct: 386 ASLHALAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFD 445

Query: 168 KMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 227
           +M +R+ VSW T+I G AE    +EA+S+ +EM +     P+  TL  VL   +  + + 
Sbjct: 446 EMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFM-PDTFTLSTVLPIFAECADIK 504

Query: 228 FGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
            G  VH Y I   +D  V   VG+++I+MY  C  +  +++VF+  +  D + W+++++G
Sbjct: 505 RGMVVHGYAIKNGFDNDV--FVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAG 562

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
            A NG   +AL +F  M+   V P  VTF +LI A  +  L+  G
Sbjct: 563 YAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLG 607


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  268 bits (686), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 152/475 (32%), Positives = 256/475 (53%), Gaps = 27/475 (5%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGH-LHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           TF   L ACS     +   EIHA+ +     + + F+ ++L+  Y     + S   +F+S
Sbjct: 218 TFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDS 277

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKP----NANTLVSVLSACSSLVSHKL 126
           V+   +  W  +I+G ++    ++A+ +F  ++       NA T+ S++ A         
Sbjct: 278 VLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISR 337

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
            + IH + ++   E N  L NA++D Y R G + +   +F  M  R++VSW T+I  Y  
Sbjct: 338 KEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVI 397

Query: 187 RGFCKEAVSVFQEMEKTKEA---------------EPNEATLVNVLSACSSISALSFGKY 231
            G   +A+ +  EM++ +E                +PN  TL+ VL  C+S+SAL+ GK 
Sbjct: 398 CGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKE 457

Query: 232 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNG 291
           +H+Y + R  L+    VG+A+++MY KCG + +A +VF+ +  ++ I+W+ +I    M+G
Sbjct: 458 IHAY-AIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHG 516

Query: 292 CGRQALQLFSLMIINA-----VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 346
            G+++L+LF  M+        V P +VTFIAL ++CSH G+VD+GL LF  M   + I P
Sbjct: 517 KGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEP 576

Query: 347 QMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW-SVWGALLNACRIHRNDEMFDRIRQD 405
              HYAC+VD+ GRAG +EEA   +  MP   +    W +LL ACRI+ N E+ +   ++
Sbjct: 577 APDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEIAAEN 636

Query: 406 LVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           L+  +      + L+SN ++ A  W+    +R  ++ MG+KK+ GCSWIE    +
Sbjct: 637 LLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEV 691



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 108/396 (27%), Positives = 187/396 (47%), Gaps = 38/396 (9%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIE--YGHLHDIFIQNSLLHFYVTV 58
           M+    S +++ F   LKA +         +IHAHV +  YG    + I N+L++ Y   
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 59  KDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHK-----EAIDMFCGIDVKPNANTLVS 113
             +  A+++F+ +   D VSW +IIS L  C F +     +A  +      +P++ TLVS
Sbjct: 61  GGLGDAYKVFDRITERDQVSWNSIISAL--CRFEEWEVAIKAFRLMLMEGFEPSSFTLVS 118

Query: 114 VLSACSSLVSHK---LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP 170
           +  ACS+L       LGK IH    R         +NA++  Y + G L     L V   
Sbjct: 119 MALACSNLRKRDGLWLGKQIHGCCFRK-GHWRTFSNNALMAMYAKLGRLDDAKSLLVLFE 177

Query: 171 KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGK 230
            R++V+W +MI  +++     EA+ +F  +   +  +P+  T  +VL ACS +  L  GK
Sbjct: 178 DRDLVTWNSMISSFSQNERFMEAL-MFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGK 236

Query: 231 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMN 290
            +H+Y     D+  ++ VG+A+++MY  CG V     VF+ +  +    W+ +I+G A +
Sbjct: 237 EIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQS 296

Query: 291 GCGRQALQLFSLMIINA-VFPDDVTFIALISA---CS--------HGGLVDQGLILFKAM 338
               +AL LF  M   A ++ +  T  +++ A   C         HG ++ +GL      
Sbjct: 297 EHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGL------ 350

Query: 339 STVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
               E    +Q+   ++DMY R G ++ ++     M
Sbjct: 351 ----ETNRYLQN--ALIDMYSRMGDIKTSKRIFDSM 380



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 13/190 (6%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           P   N  T    L  C+      K  EIHA+ I       + + ++L+  Y     +  A
Sbjct: 431 PFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLA 490

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF--------CGIDVKPNANTLVSVLS 116
            ++F+ +   +V++W  II      G  KE++++F         G +VKP   T +++ +
Sbjct: 491 RRVFDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFA 550

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDN--AILDFYIRCGSLASCGYLFVKMPK--R 172
           +CS       G ++  H ++N +      D+   I+D   R G +     L   MP    
Sbjct: 551 SCSHSGMVDEGLSLF-HKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFD 609

Query: 173 NVVSWTTMIG 182
            V +W++++G
Sbjct: 610 KVGAWSSLLG 619


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 158/460 (34%), Positives = 243/460 (52%), Gaps = 38/460 (8%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M SC    +HYTF   LKACS +       +IH    + G    +F+ N L+  Y     
Sbjct: 132 MCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGF 191

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDM---FCGIDVKPNANTLVSVLSA 117
           +  A  + + +   DVVSW ++++G ++     +A+++      + +  +A T+ S+L A
Sbjct: 192 LSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPA 251

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
            S                 N    N++        Y++         +F KM K+++VSW
Sbjct: 252 VS-----------------NTTTENVM--------YVK--------DMFFKMGKKSLVSW 278

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
             MIG Y +     EAV ++  ME     EP+  ++ +VL AC   SALS GK +H YI 
Sbjct: 279 NVMIGVYMKNAMPVEAVELYSGME-ADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIE 337

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            R  L  + L+ NA+I+MY KCG +  A  VF  +  +D +SW+ +IS    +G G  A+
Sbjct: 338 -RKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAV 396

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
            LFS M  + + PD + F+  ++ACSH GL+++G   FK M+  Y+I P+++H AC+VD+
Sbjct: 397 ALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDL 456

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTF 417
            GRAG ++EA  FI+EMP+E    VWGALL ACR+H N ++       L        G +
Sbjct: 457 LGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKLFQLAPEQSGYY 516

Query: 418 ALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            L+SN +A A RWE+   IR+ ++  GLKK  G S +EVN
Sbjct: 517 VLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVN 556



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 169/370 (45%), Gaps = 41/370 (11%)

Query: 24  HPHQKALE-IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTI 82
           +P  K L  +H+ +I     ++  +   L+  Y ++KD+ +A ++F+ +   +V+    +
Sbjct: 53  YPDLKTLRTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVM 112

Query: 83  ISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLN 139
           I      GF++E I +F   C   VKP+  T   VL ACS   +  +GK IH  + +   
Sbjct: 113 IRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGL 172

Query: 140 ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQE 199
            + + + N ++  Y +CG L+    +  +M +R+VVSW +++ GYA+     +A+ V +E
Sbjct: 173 SSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCRE 232

Query: 200 MEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKC 259
           ME  K +  +  T+ ++L A                        VSN     V  MYVK 
Sbjct: 233 MESVKISH-DAGTMASLLPA------------------------VSNTTTENV--MYVK- 264

Query: 260 GDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALI 319
                   +F  +  K  +SW+ +I     N    +A++L+S M  +   PD V+  +++
Sbjct: 265 -------DMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVL 317

Query: 320 SACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAE 379
            AC     +  G  +   +    +++P +     ++DMY + G L+ A      M     
Sbjct: 318 PACGDTSALSLGKKIHGYIER-KKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDV 376

Query: 380 WSVWGALLNA 389
            S W A+++A
Sbjct: 377 VS-WTAMISA 385


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 154/462 (33%), Positives = 255/462 (55%), Gaps = 16/462 (3%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           TF  AL ACS         E+HA+VI+   L  + F+ ++L+  Y T + +  A Q+F+ 
Sbjct: 275 TFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDM 334

Query: 71  VVFPD----VVSWTTIISGLSKCGFHKEAIDMFCGIDVK----PNANTLVSVLSACSSLV 122
           V  PD    +  W  +I G ++ G  +EA+ +F  ++ +    P   T+ SVL AC+   
Sbjct: 335 V--PDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSE 392

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
           +    +A+H + ++     N  + NA++D Y R G       +F  +   +VVSW T+I 
Sbjct: 393 AFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLIT 452

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAE--PNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           G   +G   +A  + +EM++ +E    PN  TL+ +L  C+ ++A + GK +H Y + R+
Sbjct: 453 GCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGY-AVRH 511

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
            L     VG+A+++MY KCG + ++  VF+ L  ++ I+W+ +I    M+G G +A  LF
Sbjct: 512 ALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLF 571

Query: 301 SLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
             M  +    P++VTF+A ++ACSH G+VD+GL LF AM   + + P     ACVVD+ G
Sbjct: 572 DRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILG 631

Query: 360 RAGLLEEAEAFIREMPI-EAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFA 418
           RAG L+EA A +  M   E + S W  +L ACR+HRN  + +   + L+  +      + 
Sbjct: 632 RAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYV 691

Query: 419 LMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           L+ N ++ A +W    ++R  +RR G+ K+ GCSWIEV+ +I
Sbjct: 692 LLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAI 733



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 120/421 (28%), Positives = 189/421 (44%), Gaps = 47/421 (11%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLH--DIFIQNSLLHFYVTV 58
           M S     +H     A+K+ +     + A  IHA  +  G LH     + N+LL  Y   
Sbjct: 50  MASPQQQLDHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARC 109

Query: 59  KDIFSAHQIFNSVVFP--DVVSWTTIISGLSKCGF----HKEAIDMFCGIDVKP-NANTL 111
             + +A ++F S+     D VS+ ++IS L  C F    H  A          P  + TL
Sbjct: 110 GRLAAALEVFGSISDSAHDAVSFNSLISAL--CLFRRWDHALAALRAMLAGGHPLTSFTL 167

Query: 112 VSVLSACSSLVSH----KLGKAIHAHSLRN--LNENNIILDNAILDFYIRCGSLASCGYL 165
           VSVL A S L +     +LG+  HA +L+N  L+ +     NA+L  Y R G +A    L
Sbjct: 168 VSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRL 227

Query: 166 FV-KMPKR-NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI 223
           F    P R +VV+W TM+    + G   EAV    +M       P+  T  + L ACS +
Sbjct: 228 FAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALG-VRPDGVTFASALPACSRL 286

Query: 224 SALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI--SWS 281
             L  G+ +H+Y+    +L+ ++ V +A+++MY     VG A QVF+M+    K    W+
Sbjct: 287 ELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWN 346

Query: 282 TVISGLAMNGCGRQALQLFSLMIINAVF-PDDVTFIALISACS-----------HGGLVD 329
            +I G A  G   +AL+LF+ M   A F P + T  +++ AC+           HG +V 
Sbjct: 347 AMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVK 406

Query: 330 QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           +G+   + +               ++DMY R G  + A      + +    S W  L+  
Sbjct: 407 RGMAGNRFVQNA------------LMDMYARLGKTDVARRIFAMVDLPDVVS-WNTLITG 453

Query: 390 C 390
           C
Sbjct: 454 C 454



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 9/182 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L  C++     +  EIH + + +    D+ + ++L+  Y     +  +  +F
Sbjct: 481 NAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVF 540

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF----CGIDVKPNANTLVSVLSAC--SSLV 122
           + +   + ++W  +I      G   EA  +F       + +PN  T ++ L+AC  S +V
Sbjct: 541 DRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMV 600

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP--KRNVVSWTTM 180
              L +  HA    +  E    +   ++D   R G L     +   M   ++ V +W+TM
Sbjct: 601 DRGL-QLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTM 659

Query: 181 IG 182
           +G
Sbjct: 660 LG 661


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  268 bits (685), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 147/435 (33%), Positives = 248/435 (57%), Gaps = 15/435 (3%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           EIH ++I +  + D+F++++L+  Y   +D+  A +        D V  TT+ISG    G
Sbjct: 281 EIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNG 340

Query: 91  FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
            +KEA++ F  +    +KP + T  S+  A + L +  LGK +H   ++   +    + +
Sbjct: 341 KNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGS 400

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEM--EKTKE 205
           AILD Y +CG L     +F ++ +++ + W +MI   ++ G   EA+++F++M  E T+ 
Sbjct: 401 AILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRY 460

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYI---STRYDLSVSNLVGNAVINMYVKCGDV 262
              +  ++   LSAC+++ AL +GK +H  +     R DL   +    ++I+MY KCG++
Sbjct: 461 ---DCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAES----SLIDMYAKCGNL 513

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
             + +VF+ +  K+++SW+++IS    +G  ++ L LF  M+ N + PD VTF+ +ISAC
Sbjct: 514 NFSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISAC 573

Query: 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
            H G VD+G+  +  M+  Y I  +M+HYACV DM+GRAG L EA   I  MP   +  V
Sbjct: 574 GHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLHEAFETINSMPFPPDAGV 633

Query: 383 WGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442
           WG LL AC IH N E+ +   + L +   ++ G + L++N  AGA +W    K+R  ++ 
Sbjct: 634 WGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKE 693

Query: 443 MGLKKKTGCSWIEVN 457
            G++K  G SWIEVN
Sbjct: 694 RGVRKVPGYSWIEVN 708



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 193/390 (49%), Gaps = 19/390 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  TF   L  C+         ++H   +  G   D  + N+LL  Y   + + +A ++F
Sbjct: 158 NSVTFACVLSVCASEAMLDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLF 217

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           +++   D+VSW  IISG  + G   EA  +F G+    +KP++ T  S L   + L+S K
Sbjct: 218 DTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLK 277

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
             K IH + +R+    ++ L +A++D Y +C  +        +    + V  TTMI GY 
Sbjct: 278 HCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYV 337

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH-SYISTRYDLSV 244
             G  KEA+  F+ + + +  +P   T  ++  A + ++AL+ GK +H S I T+ D   
Sbjct: 338 LNGKNKEALEAFRWLVQER-MKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKC 396

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
              VG+A+++MY KCG + +A +VFN +  KD I W+++I+  + NG   +A+ LF  M 
Sbjct: 397 H--VGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMG 454

Query: 305 INAVFPDDVTFIALISACS-----HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
           +     D V+    +SAC+     H G    GL++   + +       +   + ++DMY 
Sbjct: 455 MEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRS------DLYAESSLIDMYA 508

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           + G L  +      M  + E S W ++++A
Sbjct: 509 KCGNLNFSRRVFDRMQEKNEVS-WNSIISA 537



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 197/408 (48%), Gaps = 8/408 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    S + YTF   +KAC      +    +H  V   G   D+F+ +SL+  Y     
Sbjct: 49  MLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGH 108

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           +  A  +F+++   D V W  +++G  K G    AI +F  +   ++KPN+ T   VLS 
Sbjct: 109 LSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSV 168

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C+S     LG  +H  ++    E +  + N +L  Y +C  L +   LF  +P+ ++VSW
Sbjct: 169 CASEAMLDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSW 228

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
             +I GY + G   EA  +F+ M  +   +P+  T  + L   + + +L   K +H YI 
Sbjct: 229 NGIISGYVQNGLMGEAEHLFRGM-ISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYI- 286

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            R+ + +   + +A+I++Y KC DV +A +     +  D +  +T+ISG  +NG  ++AL
Sbjct: 287 IRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEAL 346

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
           + F  ++   + P  VTF ++  A +    ++ G  L  ++    ++  +    + ++DM
Sbjct: 347 EAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKT-KLDEKCHVGSAILDM 405

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDRIRQ 404
           Y + G L+ A      +  E +   W +++ +C  + R  E  +  RQ
Sbjct: 406 YAKCGRLDLACRVFNRI-TEKDAICWNSMITSCSQNGRPGEAINLFRQ 452



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/270 (30%), Positives = 134/270 (49%), Gaps = 7/270 (2%)

Query: 54  FYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANT 110
            YV    +  A  +F ++      +W  +I G +  G    A+  +    G  V P+  T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 111 LVSVLSACSSLVSHKLGKAIHAH-SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKM 169
              V+ AC  L S K+GK +H   +L  L E+ + + ++++  Y   G L+   YLF  +
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKED-VFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 170 PKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 229
           P+++ V W  M+ GY + G    A+ +F EM  + E +PN  T   VLS C+S + L  G
Sbjct: 120 PQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHS-EIKPNSVTFACVLSVCASEAMLDLG 178

Query: 230 KYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAM 289
             +H  I+    L + + V N ++ MY KC  +  A ++F+ L   D +SW+ +ISG   
Sbjct: 179 TQLHG-IAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQ 237

Query: 290 NGCGRQALQLFSLMIINAVFPDDVTFIALI 319
           NG   +A  LF  MI   + PD +TF + +
Sbjct: 238 NGLMGEAEHLFRGMISAGIKPDSITFASFL 267



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 111/253 (43%), Gaps = 32/253 (12%)

Query: 152 FYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEA 211
            Y+R GSL     LF  +      +W  MI G+   G    A+  + +M       P++ 
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAG-VSPDKY 59

Query: 212 TLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 271
           T   V+ AC  + ++  GK VH  ++    L     VG+++I +Y + G +  A  +F+ 
Sbjct: 60  TFPYVVKACCGLKSVKMGKIVHETVNL-MGLKEDVFVGSSLIKLYAENGHLSDAQYLFDN 118

Query: 272 LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
           +  KD + W+ +++G   NG    A+++F  M  + + P+ VTF  ++S C+   ++D G
Sbjct: 119 IPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLG 178

Query: 332 LIL----------------------------FKAMSTVYEIVPQ--MQHYACVVDMYGRA 361
             L                             +A   +++ +PQ  +  +  ++  Y + 
Sbjct: 179 TQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQN 238

Query: 362 GLLEEAEAFIREM 374
           GL+ EAE   R M
Sbjct: 239 GLMGEAEHLFRGM 251



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 14/141 (9%)

Query: 255 MYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVT 314
           MYV+ G +  A  +F  L      +W+ +I G  M G    AL  +  M+   V PD  T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY------ACVVDMYGRAGLLEEAE 368
           F  ++ AC        GL   K    V+E V  M         + ++ +Y   G L +A+
Sbjct: 61  FPYVVKACC-------GLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQ 113

Query: 369 AFIREMPIEAEWSVWGALLNA 389
                +P + +  +W  +LN 
Sbjct: 114 YLFDNIP-QKDSVLWNVMLNG 133


>gi|242091211|ref|XP_002441438.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
 gi|241946723|gb|EES19868.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
          Length = 771

 Score =  268 bits (685), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 152/428 (35%), Positives = 242/428 (56%), Gaps = 7/428 (1%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           E+H + I      DIFI NSL+  Y     +  A  IF ++   +VVSW  +I+ L++ G
Sbjct: 335 EVHGYSIRRAMESDIFIANSLMDMYAKFGCLEKASAIFENIEGRNVVSWNAMIANLAQNG 394

Query: 91  FHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
              EA  +   +      PN+ TLV++L ACS + S K+GK IHA S+     +++ + N
Sbjct: 395 AETEAFSLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIHRSLMSDLFVSN 454

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           A++D Y +CG L+    +F +  K +V S+ T+I GY++   C E++ +FQ+M ++   E
Sbjct: 455 ALIDVYAKCGQLSVAQDIFDRSEKDDV-SYNTLIVGYSQSQCCFESLHLFQQM-RSAGIE 512

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
            +  + +  LSAC+++SA   GK +H  +  R  L+    + N+++++Y K G +  A +
Sbjct: 513 YDAVSFMGCLSACANLSAFKQGKEIHGVLVRRL-LNTHPFLANSLLDLYTKGGMLATASK 571

Query: 268 VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327
           +FN +  KD  SW+T+I G  M+G    A +LF LM  + V  D V++IA++SACSHGGL
Sbjct: 572 IFNRITRKDVASWNTMILGYGMHGQIDVAFELFDLMKDDGVDYDHVSYIAVLSACSHGGL 631

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           VD+G   F  M     I PQ  HYAC+VD+ GRAG L E+   I  MP  A   VWGALL
Sbjct: 632 VDRGKKYFSQM-IAQNIKPQQMHYACMVDLLGRAGQLSESVEIITNMPFPANSDVWGALL 690

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
            +CRIH + E+     + L   K    G + L+ N ++ +  W + N+I+  ++   ++K
Sbjct: 691 GSCRIHGDIELARLAAEHLFELKPEHSGYYTLLRNMYSESGMWNEANEIKTLMKSRKVQK 750

Query: 448 KTGCSWIE 455
               SW++
Sbjct: 751 NPAYSWVQ 758



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/416 (28%), Positives = 211/416 (50%), Gaps = 20/416 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  +    + AC         L +H  V++ G    + + N+L+  Y    D+ S+ ++F
Sbjct: 212 NVASLVSVVPACGTERDEGFGLSVHGLVLKSGLDSVVNLGNALVDMYGKFGDLESSMRVF 271

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
           N +   + VSW + +   +  GFH++ ++MF  +   +V P + TL S+L A   L    
Sbjct: 272 NGMQEKNEVSWNSALGCFAHAGFHEDVLEMFRVMSEHEVTPGSVTLSSLLPALVDLGYFH 331

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LGK +H +S+R   E++I + N+++D Y + G L     +F  +  RNVVSW  MI   A
Sbjct: 332 LGKEVHGYSIRRAMESDIFIANSLMDMYAKFGCLEKASAIFENIEGRNVVSWNAMIANLA 391

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G   EA S+  EM+K  E  PN  TLVN+L ACS ++++  GK +H++ S    L   
Sbjct: 392 QNGAETEAFSLVIEMQKNGEC-PNSFTLVNLLPACSRVASVKMGKQIHAW-SIHRSLMSD 449

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             V NA+I++Y KCG + +A  +F+  + KD +S++T+I G + + C  ++L LF  M  
Sbjct: 450 LFVSNALIDVYAKCGQLSVAQDIFDR-SEKDDVSYNTLIVGYSQSQCCFESLHLFQQMRS 508

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGL----ILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
             +  D V+F+  +SAC++     QG     +L + +   +  +        ++D+Y + 
Sbjct: 509 AGIEYDAVSFMGCLSACANLSAFKQGKEIHGVLVRRLLNTHPFLAN-----SLLDLYTKG 563

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQDLVNKKGVS 413
           G+L  A      +    + + W  ++    +H       E+FD ++ D V+   VS
Sbjct: 564 GMLATASKIFNRI-TRKDVASWNTMILGYGMHGQIDVAFELFDLMKDDGVDYDHVS 618



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 174/349 (49%), Gaps = 8/349 (2%)

Query: 24  HPHQKALEIHAHVIEYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTI 82
           HP  K  E+HA  +  G L  D+F  N+L+ FY        A ++F+ +   D+VSW ++
Sbjct: 126 HP-AKGAELHAAALRRGLLLADVFAGNTLVTFYAARGRAADARRVFDEMPARDIVSWNSL 184

Query: 83  ISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLN 139
           +S L   G  ++A     G+    +  N  +LVSV+ AC +      G ++H   L++  
Sbjct: 185 VSALLTNGMLEDAKRAVVGMMRSGIPVNVASLVSVVPACGTERDEGFGLSVHGLVLKSGL 244

Query: 140 ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQE 199
           ++ + L NA++D Y + G L S   +F  M ++N VSW + +G +A  GF ++ + +F+ 
Sbjct: 245 DSVVNLGNALVDMYGKFGDLESSMRVFNGMQEKNEVSWNSALGCFAHAGFHEDVLEMFRV 304

Query: 200 MEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKC 259
           M +  E  P   TL ++L A   +     GK VH Y S R  +     + N++++MY K 
Sbjct: 305 MSE-HEVTPGSVTLSSLLPALVDLGYFHLGKEVHGY-SIRRAMESDIFIANSLMDMYAKF 362

Query: 260 GDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALI 319
           G +  A  +F  +  ++ +SW+ +I+ LA NG   +A  L   M  N   P+  T + L+
Sbjct: 363 GCLEKASAIFENIEGRNVVSWNAMIANLAQNGAETEAFSLVIEMQKNGECPNSFTLVNLL 422

Query: 320 SACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            ACS    V  G  +  A S    ++  +     ++D+Y + G L  A+
Sbjct: 423 PACSRVASVKMGKQI-HAWSIHRSLMSDLFVSNALIDVYAKCGQLSVAQ 470



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 79/188 (42%), Gaps = 8/188 (4%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M S    Y+  +F   L AC+     ++  EIH  ++        F+ NSLL  Y     
Sbjct: 506 MRSAGIEYDAVSFMGCLSACANLSAFKQGKEIHGVLVRRLLNTHPFLANSLLDLYTKGGM 565

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVL 115
           + +A +IFN +   DV SW T+I G    G    A ++F      G+D   +  + ++VL
Sbjct: 566 LATASKIFNRITRKDVASWNTMILGYGMHGQIDVAFELFDLMKDDGVDY--DHVSYIAVL 623

Query: 116 SACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNV 174
           SACS       GK   +  +    +   +    ++D   R G L+    +   MP   N 
Sbjct: 624 SACSHGGLVDRGKKYFSQMIAQNIKPQQMHYACMVDLLGRAGQLSESVEIITNMPFPANS 683

Query: 175 VSWTTMIG 182
             W  ++G
Sbjct: 684 DVWGALLG 691



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 19/232 (8%)

Query: 172 RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF--- 228
           R+   W ++    A  G   EA+ V+  M ++    P++ T    L A ++         
Sbjct: 69  RSAFLWNSLSRALASAGLPSEALRVYNCMVRSG-VRPDDRTFPFALHAAAAAVVAEAEHP 127

Query: 229 --GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
             G  +H+    R  L      GN ++  Y   G    A +VF+ +  +D +SW++++S 
Sbjct: 128 AKGAELHAAALRRGLLLADVFAGNTLVTFYAARGRAADARRVFDEMPARDIVSWNSLVSA 187

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG-----GLVDQGLILFKAMSTV 341
           L  NG    A +    M+ + +  +  + ++++ AC        GL   GL+L   + +V
Sbjct: 188 LLTNGMLEDAKRAVVGMMRSGIPVNVASLVSVVPACGTERDEGFGLSVHGLVLKSGLDSV 247

Query: 342 YEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
             +         +VDMYG+ G LE +      M  + E S W + L  C  H
Sbjct: 248 VNL------GNALVDMYGKFGDLESSMRVFNGMQEKNEVS-WNSAL-GCFAH 291


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  268 bits (685), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 154/462 (33%), Positives = 255/462 (55%), Gaps = 16/462 (3%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           TF  AL ACS         E+HA+VI+   L  + F+ ++L+  Y T + +  A Q+F+ 
Sbjct: 273 TFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDM 332

Query: 71  VVFPD----VVSWTTIISGLSKCGFHKEAIDMFCGIDVK----PNANTLVSVLSACSSLV 122
           V  PD    +  W  +I G ++ G  +EA+ +F  ++ +    P   T+ SVL AC+   
Sbjct: 333 V--PDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSE 390

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
           +    +A+H + ++     N  + NA++D Y R G       +F  +   +VVSW T+I 
Sbjct: 391 AFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLIT 450

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAE--PNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           G   +G   +A  + +EM++ +E    PN  TL+ +L  C+ ++A + GK +H Y + R+
Sbjct: 451 GCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGY-AVRH 509

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
            L     VG+A+++MY KCG + ++  VF+ L  ++ I+W+ +I    M+G G +A  LF
Sbjct: 510 ALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLF 569

Query: 301 SLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
             M  +    P++VTF+A ++ACSH G+VD+GL LF AM   + + P     ACVVD+ G
Sbjct: 570 DRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILG 629

Query: 360 RAGLLEEAEAFIREMPI-EAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFA 418
           RAG L+EA A +  M   E + S W  +L ACR+HRN  + +   + L+  +      + 
Sbjct: 630 RAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYV 689

Query: 419 LMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           L+ N ++ A +W    ++R  +RR G+ K+ GCSWIEV+ +I
Sbjct: 690 LLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAI 731



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 120/421 (28%), Positives = 189/421 (44%), Gaps = 47/421 (11%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLH--DIFIQNSLLHFYVTV 58
           M S     +H     A+K+ +     + A  IHA  +  G LH     + N+LL  Y   
Sbjct: 48  MASPQQQLDHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARC 107

Query: 59  KDIFSAHQIFNSVVFP--DVVSWTTIISGLSKCGF----HKEAIDMFCGIDVKP-NANTL 111
             + +A ++F S+     D VS+ ++IS L  C F    H  A          P  + TL
Sbjct: 108 GRLAAALEVFGSISDSAHDAVSFNSLISAL--CLFRRWDHALAALRAMLAGGHPLTSFTL 165

Query: 112 VSVLSACSSLVSH----KLGKAIHAHSLRN--LNENNIILDNAILDFYIRCGSLASCGYL 165
           VSVL A S L +     +LG+  HA +L+N  L+ +     NA+L  Y R G +A    L
Sbjct: 166 VSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRL 225

Query: 166 FV-KMPKR-NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI 223
           F    P R +VV+W TM+    + G   EAV    +M       P+  T  + L ACS +
Sbjct: 226 FAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALG-VRPDGVTFASALPACSRL 284

Query: 224 SALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI--SWS 281
             L  G+ +H+Y+    +L+ ++ V +A+++MY     VG A QVF+M+    K    W+
Sbjct: 285 ELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWN 344

Query: 282 TVISGLAMNGCGRQALQLFSLMIINAVF-PDDVTFIALISACS-----------HGGLVD 329
            +I G A  G   +AL+LF+ M   A F P + T  +++ AC+           HG +V 
Sbjct: 345 AMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVK 404

Query: 330 QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           +G+   + +               ++DMY R G  + A      + +    S W  L+  
Sbjct: 405 RGMAGNRFVQNA------------LMDMYARLGKTDVARRIFAMVDLPDVVS-WNTLITG 451

Query: 390 C 390
           C
Sbjct: 452 C 452



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 9/182 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L  C++     +  EIH + + +    D+ + ++L+  Y     +  +  +F
Sbjct: 479 NAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVF 538

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF----CGIDVKPNANTLVSVLSAC--SSLV 122
           + +   + ++W  +I      G   EA  +F       + +PN  T ++ L+AC  S +V
Sbjct: 539 DRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMV 598

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP--KRNVVSWTTM 180
              L +  HA    +  E    +   ++D   R G L     +   M   ++ V +W+TM
Sbjct: 599 DRGL-QLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTM 657

Query: 181 IG 182
           +G
Sbjct: 658 LG 659


>gi|90399180|emb|CAJ86042.1| H0723C07.12 [Oryza sativa Indica Group]
          Length = 886

 Score =  268 bits (685), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 154/468 (32%), Positives = 261/468 (55%), Gaps = 14/468 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYG-HLHDIFIQNSLLHFYVTVK 59
           M    +S N +T +  LKAC      +  ++IH   +  G   HD+ + NSL+  Y   +
Sbjct: 292 MRGSGTSPNEFTLSATLKACGGGT--RAGVQIHGVCVRTGFEGHDV-VANSLVVMYSKGR 348

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVL 115
               A ++F+ +   ++ +W ++ISG +  G  ++++ +F  +    D +P+  T  S+L
Sbjct: 349 WTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLL 408

Query: 116 SACSSLVSHKLGKAIHAH-SLRNLNE-NNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
            ACS L + + G  +HA  ++R ++  +N IL  A+LD Y++C  L     +F  + +RN
Sbjct: 409 KACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRN 468

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
            + WTT+I G+A+ G  KEA+ +F+    +     +   L +V++  +  + +  GK VH
Sbjct: 469 AIQWTTVIVGHAQEGQVKEAMCLFRRFWSSG-VRADGHVLSSVVAVFADFALVEQGKQVH 527

Query: 234 SYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
            Y + T   L VS  V N++++MY+KCG  G A + F  +  ++ +SW+ +I+G+  +G 
Sbjct: 528 CYTAKTPAGLDVS--VANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGH 585

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
           GR+A+ LF  M    V  D+V ++AL+SACSH GLVD+    F  +     + P+ +HYA
Sbjct: 586 GREAIDLFEEMQAEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQDRRMRPKAEHYA 645

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           C+VD+ GRAG L EA+  I  MP+E    VW  LL+ACR+H++  +   +   L+   G 
Sbjct: 646 CMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVHKDVAVGREVGDVLLAVDGD 705

Query: 413 SVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +   + ++SN  A A  W +   IR  +RR GL+K+ GCSW EV+  +
Sbjct: 706 NPVNYVMLSNILAEAGEWRECQGIRGAMRRKGLRKQGGCSWTEVDKEV 753



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/384 (28%), Positives = 193/384 (50%), Gaps = 14/384 (3%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           L+A +     +  +++HA +++ G   D  + N+L+  Y     +  A ++F+ +   +V
Sbjct: 207 LRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNV 266

Query: 77  VSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAH 133
           VSWT ++ G    G  +E + +F    G    PN  TL + L AC      + G  IH  
Sbjct: 267 VSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGG--GTRAGVQIHGV 324

Query: 134 SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
            +R   E + ++ N+++  Y +         +F  +P RN+ +W +MI GYA  G  +++
Sbjct: 325 CVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDS 384

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN-LVGNAV 252
           + VF+EM++  + +P+E T  ++L ACS + A   G  VH+ ++ R     SN ++  A+
Sbjct: 385 LLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGAL 444

Query: 253 INMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD 312
           +++YVKC  + +A+QVF+ L  ++ I W+TVI G A  G  ++A+ LF     + V  D 
Sbjct: 445 LDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADG 504

Query: 313 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA---CVVDMYGRAGLLEEAEA 369
               ++++  +   LV+QG    K +       P     +    +VDMY + GL  EA  
Sbjct: 505 HVLSSVVAVFADFALVEQG----KQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGR 560

Query: 370 FIREMPIEAEWSVWGALLNACRIH 393
             REMP     S W A++N    H
Sbjct: 561 RFREMPARNVVS-WTAMINGVGKH 583



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 128/247 (51%), Gaps = 6/247 (2%)

Query: 94  EAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFY 153
            AID+  G         +  +L A +   S + G  +HA  ++    ++ +L+N ++D Y
Sbjct: 187 RAIDLL-GFLPMERRRMIADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMY 245

Query: 154 IRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATL 213
            +CG L   G +F  MP+RNVVSWT ++ G+   G  +E + +F EM  +  + PNE TL
Sbjct: 246 AKCGKLHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTS-PNEFTL 304

Query: 214 VNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 273
              L AC        G  +H  +  R      ++V N+++ MY K    G A +VF+++ 
Sbjct: 305 SATLKACG--GGTRAGVQIHG-VCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIP 361

Query: 274 YKDKISWSTVISGLAMNGCGRQALQLFSLM-IINAVFPDDVTFIALISACSHGGLVDQGL 332
            ++  +W+++ISG A  G GR +L +F  M   +   PD+ TF +L+ ACS  G   +G 
Sbjct: 362 SRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGA 421

Query: 333 ILFKAMS 339
            +  AM+
Sbjct: 422 QVHAAMA 428


>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 813

 Score =  268 bits (685), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 151/431 (35%), Positives = 242/431 (56%), Gaps = 7/431 (1%)

Query: 29  ALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
            +E+H   ++     D+FI NSL+  Y        A  IFN +   ++VSW  +I+  ++
Sbjct: 361 GMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFAR 420

Query: 89  CGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
                EA+++   +  K   PN  T  +VL AC+ L    +GK IHA  +R  +  ++ +
Sbjct: 421 NRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKEIHARIIRVGSSLDLFV 480

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            NA+ D Y +CG L     +F  +  R+ VS+  +I GY+      E++ +F EM +   
Sbjct: 481 SNALTDMYSKCGCLNLAQNVF-NISVRDEVSYNILIIGYSRTNDSLESLRLFSEM-RLLG 538

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
             P+  + + V+SAC++++ +  GK +H  +  R        V N+++++Y +CG + +A
Sbjct: 539 MRPDIVSFMGVVSACANLAFIRQGKEIHGLL-VRKLFHTHLFVANSLLDLYTRCGRIDLA 597

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
            +VF  +  KD  SW+T+I G  M G    A+ LF  M  + V  D V+F+A++SACSHG
Sbjct: 598 TKVFYCIQNKDVASWNTMILGYGMRGELDTAINLFEAMKEDGVEYDSVSFVAVLSACSHG 657

Query: 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 385
           GL+++G   FK M  +  I P   HYAC+VD+ GRAGL+EEA   IR + I  + ++WGA
Sbjct: 658 GLIEKGRKYFKMMCDL-NIEPTHTHYACMVDLLGRAGLMEEAADLIRGLSIIPDTNIWGA 716

Query: 386 LLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445
           LL ACRIH N E+     + L   K    G + L+SN +A A+RW++ NK+R+ ++  G 
Sbjct: 717 LLGACRIHGNIELGLWAAEHLFELKPQHCGYYILLSNMYAEAERWDEANKVRELMKSRGA 776

Query: 446 KKKTGCSWIEV 456
           KK  GCSW++V
Sbjct: 777 KKNPGCSWVQV 787



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 110/365 (30%), Positives = 193/365 (52%), Gaps = 18/365 (4%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHD-IFIQNSLLHFYVTVKDIFSAHQIFNS 70
           T    L  C+       A  +H + ++ G L   + + N+L+  Y       ++ ++F+ 
Sbjct: 242 TVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDE 301

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMF-CGID--VKPNANTLVSVLSACSSLVSHKLG 127
           +   +V+SW  II+  S  G + +A+D+F   ID  ++PN+ T+ S+L     L   KLG
Sbjct: 302 IDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLG 361

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
             +H  SL+   E+++ + N+++D Y + GS      +F KM  RN+VSW  MI  +A  
Sbjct: 362 MEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFARN 421

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
               EAV + ++M+   E  PN  T  NVL AC+ +  L+ GK +H+ I  R   S+   
Sbjct: 422 RLEYEAVELVRQMQAKGET-PNNVTFTNVLPACARLGFLNVGKEIHARI-IRVGSSLDLF 479

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V NA+ +MY KCG + +A  VFN ++ +D++S++ +I G +      ++L+LFS M +  
Sbjct: 480 VSNALTDMYSKCGCLNLAQNVFN-ISVRDEVSYNILIIGYSRTNDSLESLRLFSEMRLLG 538

Query: 308 VFPDDVTFIALISACSHGGLVDQ-----GLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
           + PD V+F+ ++SAC++   + Q     GL++ K   T   +   +      +D+Y R G
Sbjct: 539 MRPDIVSFMGVVSACANLAFIRQGKEIHGLLVRKLFHTHLFVANSL------LDLYTRCG 592

Query: 363 LLEEA 367
            ++ A
Sbjct: 593 RIDLA 597



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 182/363 (50%), Gaps = 9/363 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T+   LK CS     +K  E+H    + G   D+F+ N+LL FY        A ++F+ +
Sbjct: 139 TYPFVLKVCSDFVEVRKGREVHGVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEM 198

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLVSHKL 126
              D VSW T+I   S  GF++EA+  F         ++P+  T+VSVL  C+      +
Sbjct: 199 PERDKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQPDLVTVVSVLPVCAETEDKVM 258

Query: 127 GKAIHAHSLR-NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            + +H ++L+  L   ++ + NA++D Y +CGS  +   +F ++ +RNV+SW  +I  ++
Sbjct: 259 ARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDEIDERNVISWNAIITSFS 318

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
            RG   +A+ VF+ M   +   PN  T+ ++L     +     G  VH + S +  +   
Sbjct: 319 FRGKYMDALDVFRLM-IDEGMRPNSVTISSMLPVLGELGLFKLGMEVHGF-SLKMAIESD 376

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             + N++I+MY K G   IA  +FN +  ++ +SW+ +I+  A N    +A++L   M  
Sbjct: 377 VFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFARNRLEYEAVELVRQMQA 436

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
               P++VTF  ++ AC+  G ++ G  +   +  V   +      A + DMY + G L 
Sbjct: 437 KGETPNNVTFTNVLPACARLGFLNVGKEIHARIIRVGSSLDLFVSNA-LTDMYSKCGCLN 495

Query: 366 EAE 368
            A+
Sbjct: 496 LAQ 498



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 105/395 (26%), Positives = 183/395 (46%), Gaps = 9/395 (2%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIF-NSVVFP 74
           L+ C+L     +  ++HA+ + +G L   + +  SL+  Y +     ++  +F +SV + 
Sbjct: 41  LQLCTLCDTLSQTKQVHAYSLLHGFLPRSVSLCASLILQYASFGHPSNSLLLFQHSVAYS 100

Query: 75  -DVVSWTTIISGLSKCGFHKE--AIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIH 131
                W T+I   S  G        +      VKP+  T   VL  CS  V  + G+ +H
Sbjct: 101 RSAFLWNTLIRANSIAGVFDGFGTYNTMVRAGVKPDECTYPFVLKVCSDFVEVRKGREVH 160

Query: 132 AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
             + +   + ++ + N +L FY  CG       +F +MP+R+ VSW T+IG  +  GF +
Sbjct: 161 GVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEMPERDKVSWNTVIGLCSLHGFYE 220

Query: 192 EAVSVFQEMEKTKEA-EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGN 250
           EA+  F+ M   K   +P+  T+V+VL  C+        + VH Y      L     VGN
Sbjct: 221 EALGFFRVMVAAKPGIQPDLVTVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHVKVGN 280

Query: 251 AVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP 310
           A++++Y KCG    + +VF+ +  ++ ISW+ +I+  +  G    AL +F LMI   + P
Sbjct: 281 ALVDVYGKCGSEKASKKVFDEIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRP 340

Query: 311 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAF 370
           + VT  +++      GL   G+ +    S    I   +     ++DMY ++G    A   
Sbjct: 341 NSVTISSMLPVLGELGLFKLGMEV-HGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTI 399

Query: 371 IREMPIEAEWSVWGALL-NACRIHRNDEMFDRIRQ 404
             +M +    S W A++ N  R     E  + +RQ
Sbjct: 400 FNKMGVRNIVS-WNAMIANFARNRLEYEAVELVRQ 433



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 3/111 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           +F   + AC+     ++  EIH  ++       +F+ NSLL  Y     I  A ++F  +
Sbjct: 545 SFMGVVSACANLAFIRQGKEIHGLLVRKLFHTHLFVANSLLDLYTRCGRIDLATKVFYCI 604

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACS 119
              DV SW T+I G    G    AI++F  +    V+ ++ + V+VLSACS
Sbjct: 605 QNKDVASWNTMILGYGMRGELDTAINLFEAMKEDGVEYDSVSFVAVLSACS 655


>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Brachypodium distachyon]
          Length = 707

 Score =  268 bits (685), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 151/461 (32%), Positives = 254/461 (55%), Gaps = 15/461 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +T + +LKAC +       + IH   +  G      + NSL+  Y     I  A ++F
Sbjct: 105 NEFTLSASLKACGVVGDMAAGVWIHGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVF 164

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI--------DVKPNANTLVSVLSACSS 120
           +  VF ++V+W  +ISG +  G  ++++ +F  +        D +P+  T  S+L AC S
Sbjct: 165 DGTVFRNLVTWNAMISGYAHAGHGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGS 224

Query: 121 LVSHKLGKAIHAHS-LRNLNE-NNIILDNAILDFYIRCGSLASCG-YLFVKMPKRNVVSW 177
           L + + G  +HA   +R ++  +N IL  A+LD Y++C  L      +F ++ ++N + W
Sbjct: 225 LGAAREGAQVHAAMVIRGVSTASNAILAGALLDMYVKCRCLLPMAMQVFNRLEQKNAIQW 284

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-I 236
           TT+I G+A+ G  KEA+ +F     +     +   L +V+   +  + +  G+ VH Y +
Sbjct: 285 TTVIVGHAQEGQVKEAMELFGRFWSSG-VRADGHVLSSVVGVFADFALVEQGRQVHCYTV 343

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
            T   L VS  V N++I+MY KCG    A + F  +  ++ +SW+ +I+GL  +G G++A
Sbjct: 344 KTPAGLDVS--VANSLIDMYHKCGLTDEAARRFREVPARNVVSWTAMINGLGKHGHGQEA 401

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
           + +F  M    V PD+V ++AL+SACSH GLV++    F A+     + P+ +HYAC+VD
Sbjct: 402 IHMFEEMRAEGVEPDEVAYLALLSACSHSGLVEECRRYFSAIRHDRRLRPRAEHYACMVD 461

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGT 416
           + GRAG L EA+  +  MP+     VW  LL+ACR+H+N  +     + L+   G +   
Sbjct: 462 LLGRAGELSEAKDLVATMPMAPTVGVWQTLLSACRVHKNVTVGREAGETLLAIDGDNPVN 521

Query: 417 FALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           + ++SN FA A  W +  ++R  +RR GL+K+ GCSW+EV 
Sbjct: 522 YVMLSNIFAEAGDWRECQRVRGAMRRRGLRKQGGCSWVEVG 562



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/419 (28%), Positives = 208/419 (49%), Gaps = 18/419 (4%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           L+A + +       ++H  +++ G   D  + N+L+  Y    ++  A ++F  +   +V
Sbjct: 11  LRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGGMPERNV 70

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIHA 132
           VSWT ++ G  + G  +E + +   +    DV PN  TL + L AC  +     G  IH 
Sbjct: 71  VSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAAGVWIHG 130

Query: 133 HSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKE 192
             +R   E + ++ N+++  Y + G +     +F     RN+V+W  MI GYA  G  ++
Sbjct: 131 ACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHAGHGRD 190

Query: 193 AVSVFQEMEKTKEAE----PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN-L 247
           ++ VF+EM++ ++ E    P+E T  ++L AC S+ A   G  VH+ +  R   + SN +
Sbjct: 191 SLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVSTASNAI 250

Query: 248 VGNAVINMYVKCG-DVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
           +  A+++MYVKC   + +A+QVFN L  K+ I W+TVI G A  G  ++A++LF     +
Sbjct: 251 LAGALLDMYVKCRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFGRFWSS 310

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
            V  D     +++   +   LV+QG  +    +        +     ++DMY + GL +E
Sbjct: 311 GVRADGHVLSSVVGVFADFALVEQGRQVH-CYTVKTPAGLDVSVANSLIDMYHKCGLTDE 369

Query: 367 AEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDRIRQDLVNKKGVSVGTFALMS 421
           A    RE+P     S W A++N    H + +    MF+ +R + V      V   AL+S
Sbjct: 370 AARRFREVPARNVVS-WTAMINGLGKHGHGQEAIHMFEEMRAEGVEPD--EVAYLALLS 425


>gi|297843162|ref|XP_002889462.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335304|gb|EFH65721.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 608

 Score =  268 bits (685), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 147/462 (31%), Positives = 260/462 (56%), Gaps = 11/462 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+S     N +T + A+KAC      +     H  VI +G   +  I ++L + Y   K+
Sbjct: 153 MVSFGLQPNKFTLSSAVKACFELGEVRLGRCFHGVVITHGFEWNHVISSTLAYMYGVNKE 212

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC----GIDVKPNANTLVSVLS 116
              A ++F+ +  PDV+ WT ++S  SK   ++EA+ +F     G  + P+ +T  +VL+
Sbjct: 213 PVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLT 272

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
           AC +L   K GK IH   + N   +N+++++++LD Y + GS+     +F  MP++N+VS
Sbjct: 273 ACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKSGSVREARQVFNGMPRKNIVS 332

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           W+ ++GGY + G  ++A+ +F+EME     E +      VL AC+ ++A+  GK +H   
Sbjct: 333 WSALLGGYCQNGEHEKAIEMFREME-----EKDLYCFGTVLKACAGLAAVRLGKEIHGQY 387

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
             R     + +V +A+I++Y K G +  A +V++ ++ ++ I+W+ ++S LA NG G +A
Sbjct: 388 VRRGCFG-NVIVESALIDLYGKSGCIDYASRVYSKMSVRNMITWNAMLSALAQNGRGEEA 446

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
           +  F+ M+   + PD ++FIA+++AC H GLV++G   F  M+  Y I P  +HY+C++D
Sbjct: 447 VSFFNDMVKKGIKPDYISFIAVLTACGHTGLVEEGRNYFALMAKSYGIKPGTEHYSCMID 506

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN-DEMFDRIRQDLVNKKGVSVG 415
           + GRAGL EEAE  +       + S+WG LL  C  + +   + +RI + ++  +     
Sbjct: 507 LLGRAGLFEEAENLLDRAECRNDASLWGVLLGPCAANTDASSIAERIAKRMMELEPKYHM 566

Query: 416 TFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           ++ L+SN +    R  D  KIR  + R G+ K  G SWI+ +
Sbjct: 567 SYVLLSNMYKAIGRHGDALKIRKLMVRRGVAKTVGQSWIDAH 608



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/413 (26%), Positives = 197/413 (47%), Gaps = 30/413 (7%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV-KDIFSAHQIFNSV 71
           +   L+ C         L+ HAHV++ G   D  + NSLL  Y  +  D+    ++F+ +
Sbjct: 63  YASLLQTCRKVFSFIHGLQFHAHVVKSGLETDRNVGNSLLSLYFKLGPDMRETRRVFDGM 122

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGK 128
              D +SWT+++SG      H +A+++F       ++PN  TL S + AC  L   +LG+
Sbjct: 123 FVKDAISWTSMMSGYVASKEHVKALEVFVEMVSFGLQPNKFTLSSAVKACFELGEVRLGR 182

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
             H   + +  E N ++ + +   Y           +F +MP+ +V+ WT ++  +++  
Sbjct: 183 CFHGVVITHGFEWNHVISSTLAYMYGVNKEPVDARRVFDEMPEPDVICWTAVLSAFSKND 242

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
             +EA+ +F  M + K   P+ +T   VL+AC ++  L  GK +H  + T   +  + +V
Sbjct: 243 LYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITN-GIGSNVVV 301

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            +++++MY K G V  A QVFN +  K+ +SWS ++ G   NG   +A+++F  M    +
Sbjct: 302 ESSLLDMYGKSGSVREARQVFNGMPRKNIVSWSALLGGYCQNGEHEKAIEMFREMEEKDL 361

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC---------VVDMYG 359
           +     F  ++ AC+  GL         A+    EI  Q     C         ++D+YG
Sbjct: 362 Y----CFGTVLKACA--GLA--------AVRLGKEIHGQYVRRGCFGNVIVESALIDLYG 407

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           ++G ++ A     +M +      W A+L+A   +   E       D+V KKG+
Sbjct: 408 KSGCIDYASRVYSKMSVR-NMITWNAMLSALAQNGRGEEAVSFFNDMV-KKGI 458


>gi|222622248|gb|EEE56380.1| hypothetical protein OsJ_05522 [Oryza sativa Japonica Group]
          Length = 518

 Score =  268 bits (685), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 141/432 (32%), Positives = 245/432 (56%), Gaps = 7/432 (1%)

Query: 28  KALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS 87
           KA+E+ + + E G   +    ++LL   +  +D+ SA  +F+ +  P V +W T++SG  
Sbjct: 41  KAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYC 100

Query: 88  KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
           +   H++ I++F  +   +V+P+  TL  +LS+CS L     G+ +H+ S+R L  N++ 
Sbjct: 101 QEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMF 160

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           + + ++D Y +CG +     +F KM +R+VV W ++I G       KEA   F++M +  
Sbjct: 161 VASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENG 220

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVG 263
              P E++  +++++CS +S++  G+ +H+ +    YD +V   VG+A+I+MY KCG++ 
Sbjct: 221 -IMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNV--YVGSALIDMYAKCGNMD 277

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
            A   F+ +  K+ ++W+ +I G A NG G +A++LF  M+     PD VTFIA+++ CS
Sbjct: 278 DARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCS 337

Query: 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 383
           H GLVD+ +  F +M   Y I+P  +HY C++D  GRAG   E EA I +MP + +  +W
Sbjct: 338 HSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIW 397

Query: 384 GALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443
             LL AC +H N E+     + L      +   + L+SN +A   R  D + +R  +   
Sbjct: 398 EVLLAACVVHHNAELGKCAAEHLFRIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNR 457

Query: 444 GLKKKTGCSWIE 455
           G+ K  G SWI+
Sbjct: 458 GVVKGRGYSWID 469



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 118/272 (43%), Gaps = 40/272 (14%)

Query: 153 YIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEAT 212
           Y +C  +     +F  +P   +VSW  +I G+ + G C +AV V   M++    EPNE T
Sbjct: 2   YTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAG-FEPNEVT 60

Query: 213 LVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 272
             N+L++C                                    +K  DV  A  +F+ +
Sbjct: 61  YSNLLASC------------------------------------IKARDVHSARAMFDKI 84

Query: 273 AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL 332
           +     +W+T++SG       +  ++LF  M    V PD  T   ++S+CS  G++D G 
Sbjct: 85  SRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGR 144

Query: 333 ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI 392
            +  A S  + +   M   + +VDMY + G +  A +   +M  E +   W ++++   I
Sbjct: 145 QVHSA-SVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKM-TERDVVCWNSIISGLTI 202

Query: 393 HR-NDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           H  N E FD  +Q   N    +  ++A M N+
Sbjct: 203 HSLNKEAFDFFKQMRENGIMPTESSYASMINS 234



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 91/194 (46%), Gaps = 20/194 (10%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           ++   + +CS         +IHA V++ G+  ++++ ++L+  Y    ++  A   F+++
Sbjct: 227 SYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTM 286

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGK 128
           +  ++V+W  +I G ++ G   +A+++F      + KP+A T ++VL+ CS       G 
Sbjct: 287 MMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCS-----HSGL 341

Query: 129 AIHAHSLRNLNENNI-ILDNA-----ILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMI 181
              A +  N  EN+  I+  A     ++D   R G       L  KMP K + + W  ++
Sbjct: 342 VDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLL 401

Query: 182 GG-----YAERGFC 190
                   AE G C
Sbjct: 402 AACVVHHNAELGKC 415



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 255 MYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVT 314
           MY KC ++  A++VF  L     +SW+ +I+G    G   +A+++ SLM      P++VT
Sbjct: 1   MYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVT 60

Query: 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
           +  L+++C     V     +F  +S      P +  +  ++  Y +    ++     R M
Sbjct: 61  YSNLLASCIKARDVHSARAMFDKISR-----PSVTTWNTLLSGYCQEEQHQDTIELFRRM 115

Query: 375 P---IEAEWSVWGALLNAC 390
               ++ + +    +L++C
Sbjct: 116 QHQNVQPDRTTLAVILSSC 134


>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  268 bits (685), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 147/453 (32%), Positives = 256/453 (56%), Gaps = 11/453 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           TF  AL A S         ++HA++++   +  + I N+++  Y     I ++ ++F+++
Sbjct: 324 TFLSALTAISQLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNM 383

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKP---NANTLVSVLSACSSLVSHKLGK 128
           +  DVV+W T++S   + G   E + +   +  +    ++ TL ++LS  S+L S ++GK
Sbjct: 384 LERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGK 443

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP--KRNVVSWTTMIGGYAE 186
             HA+ +R+  +    +D  ++D Y + G + +   LF K     R+  +W  MI GY +
Sbjct: 444 QAHAYLIRHGIQFEG-MDGYLIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQ 502

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
            G  +E  +VF++M + +   PN  TL ++L AC+ +  +  GK +H + + R  L+ + 
Sbjct: 503 NGLSEEGFAVFRKMIE-QNVRPNAVTLASILPACNPMGTIGLGKQIHGF-AIRCFLNQNV 560

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            VG A+++MY K G +  A  VF     K+ ++++T+I     +G G +AL LF  M+ +
Sbjct: 561 FVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYGQHGMGERALSLFHAMLGS 620

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
            + PD VTF+A++SACS+ GLVD+GL +F++M   Y+I P  +HY CV DM GR G + E
Sbjct: 621 GIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSSEHYCCVADMLGRVGRVXE 680

Query: 367 AEAFIREMPIEAE-WSVWGALLNACRIHRNDEMFDRIRQDLV--NKKGVSVGTFALMSNT 423
           A  F++ +  E   + +WG+LL ACRIH   E+   +   L+   K     G   L+SN 
Sbjct: 681 AYEFVKGLGEEGNTFRIWGSLLGACRIHGEFELGKVVANKLLEMEKGSXLTGYHVLLSNI 740

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           +A    W++ +++R E+R+ GL K+ GCSW+EV
Sbjct: 741 YAAEGNWDNVDRVRKEMRQKGLMKEAGCSWVEV 773



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/419 (25%), Positives = 197/419 (47%), Gaps = 47/419 (11%)

Query: 1   MLSCPS-SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVT-- 57
           M + PS  ++ YTF+  LKAC+ A   +    +H HV+         + NSLL+ Y T  
Sbjct: 94  MRASPSPKFDSYTFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCL 153

Query: 58  --VKDIFSAH---------QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGID 103
             V  + +A+         ++F+++   +VV+W T+IS   K     EA  MF     + 
Sbjct: 154 TEVPYLGTAYDFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMG 213

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR---NLNENNIILDNAILDFYIRCGSLA 160
           ++P   + V+V  A   +  +     ++   ++   +  ++  ++ +AI   Y   G + 
Sbjct: 214 IRPTPVSFVNVFPAVWRMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIF-MYAELGCVD 272

Query: 161 SCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
               +F    +RN   W TMIGGY +     EA+ +F ++ ++++   ++ T ++ L+A 
Sbjct: 273 FAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAI 332

Query: 221 SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
           S +  L  G+ +H+YI  +    +  ++ NA+I MY +CG +G + +VF+ +  +D ++W
Sbjct: 333 SQLQWLDLGRQLHAYI-LKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTW 391

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS-----------HGGLVD 329
           +T++S    NG   + L L   M       D VT  AL+S  S           H  L+ 
Sbjct: 392 NTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIR 451

Query: 330 QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEA-FIREMPIEAEWSVWGALL 387
            G I F+ M               ++DMY ++GL+  A+  F +    + + + W A++
Sbjct: 452 HG-IQFEGMD------------GYLIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMI 497



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 159/350 (45%), Gaps = 32/350 (9%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKP----NANTLVSVLSACS 119
           A  +F+S+  P  V W TII G        +A+  +  +   P    ++ T  S L AC+
Sbjct: 56  ALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKACA 115

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYL-------------- 165
              S KLGKA+H H LR+   ++ I+ N++L+ Y  C  L    YL              
Sbjct: 116 QARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTC--LTEVPYLGTAYDFNNCDLVRR 173

Query: 166 -FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224
            F  M KRNVV+W TMI  Y +     EA  +F+ M +     P   + VNV  A   ++
Sbjct: 174 VFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMG-IRPTPVSFVNVFPAVWRMN 232

Query: 225 ALSFGKYVHSYISTRYDLSVSN-LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTV 283
                  ++  +       V +  V ++ I MY + G V  A ++F+    ++   W+T+
Sbjct: 233 DYDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTM 292

Query: 284 ISGLAMNGCGRQALQLFSLMIINAVFP-DDVTFIALISACSHGGLVDQGLILFKAM---S 339
           I G   N C  +A+ LF  ++ +  F  DDVTF++ ++A S    +D G  L   +   S
Sbjct: 293 IGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILKSS 352

Query: 340 TVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           T+ ++V        ++ MY R G +  +      M +E +   W  +++A
Sbjct: 353 TILQVVI----LNAIIVMYSRCGSIGTSFKVFSNM-LERDVVTWNTMVSA 397


>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 642

 Score =  268 bits (685), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 170/512 (33%), Positives = 266/512 (51%), Gaps = 63/512 (12%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           P S  ++T +  LKA +     +    ++  V++YG   D+ +QNS+L  ++  + + +A
Sbjct: 96  PISVLNFTISSVLKALARLTRFKGGQAVYGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTA 155

Query: 65  HQIFNSVVFPDVVSWTTIISGLSK--------------------------CGFHK----- 93
            Q F+ +   D+VSW  +ISG                             CG+ K     
Sbjct: 156 RQAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMA 215

Query: 94  EAIDMFCGIDVKPNA--NTLVSVLSACSSLVS----------HKLG----------KAIH 131
           EA  +F  + VK  A  N +VS        V+          H  G          KA  
Sbjct: 216 EAQVLFDSMPVKDLASWNVMVSGYMDIGDCVNARIIFGKMPIHDTGSWNIMISGFCKAGE 275

Query: 132 AHSLRN----LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
             S ++    +   N+I    +LD YI+ G       LF +MP +N+V+W+TMIGGYA  
Sbjct: 276 LESAKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARN 335

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGK-YVHSYISTRYDLSVSN 246
           G   +A+ +F+   K ++ +P+E  ++ ++SACS +  +   +  +H+Y+       +S+
Sbjct: 336 GQPLKALELFERF-KEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSL---LSD 391

Query: 247 L-VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
           L V  ++I+MY KCG +  A+Q+F M   KD + +ST+I+ LA +G GR A+ LF  M  
Sbjct: 392 LRVFTSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQR 451

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             + PD VTF+ +++AC+HGGLVD+G   FK M+  + I P  +HYACVVD+ GR G LE
Sbjct: 452 ANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLE 511

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EA   IR MPI     VWGALL ACR+H N ++ +    +L   +  + G + L+SN +A
Sbjct: 512 EAYNLIRNMPIAPHSVVWGALLAACRVHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYA 571

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            A RW    K+R +IR   ++K  G SWIE++
Sbjct: 572 AAGRWGSVAKVRAKIREHRVRKNRGSSWIELS 603



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 180/400 (45%), Gaps = 73/400 (18%)

Query: 32  IHAHV-IEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           IHA + IE       F+ N LL  Y        AH++F+ +  P+   WT++I G  +  
Sbjct: 21  IHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENR 80

Query: 91  FHKEAIDMFCGIDVKPNA---NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
            + EA  +F  +  +P +    T+ SVL A + L   K G+A++   L+     ++I+ N
Sbjct: 81  QYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFVLKYGFAFDLIVQN 140

Query: 148 AILDFYIRCGSLASC--------------------GY-----------LFVKMPKRNVVS 176
           ++LD ++RC  + +                     GY            F +MP+RNVVS
Sbjct: 141 SVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVS 200

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA-LSFGKY-VHS 234
           WT+MI GY + G   EA  +F  M     A  N   +   +     ++A + FGK  +H 
Sbjct: 201 WTSMICGYVKAGDMAEAQVLFDSMPVKDLASWN-VMVSGYMDIGDCVNARIIFGKMPIHD 259

Query: 235 YISTRYDLSVSNLVGNA----------------------VINMYVKCGDVGIAIQVFNML 272
             +  +++ +S                            +++ Y+K GD   A  +F+ +
Sbjct: 260 --TGSWNIMISGFCKAGELESAKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQM 317

Query: 273 AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL 332
             K+ ++WST+I G A NG   +AL+LF       + PD+   + +ISACS  G++D   
Sbjct: 318 PMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDA-- 375

Query: 333 ILFKAMSTVY-----EIVPQMQHYACVVDMYGRAGLLEEA 367
               A S ++      ++  ++ +  ++DMY + G +E+A
Sbjct: 376 ----AESIIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKA 411



 Score = 38.5 bits (88), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 40/201 (19%), Positives = 89/201 (44%), Gaps = 19/201 (9%)

Query: 213 LVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 272
           +++++  C ++ +L   K +H+ +     ++ S  V N ++ +Y + G    A +VF+ +
Sbjct: 5   ILHIIHNCKTLKSL---KSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEI 61

Query: 273 AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH-----GGL 327
              +   W+++I G   N    +A  LF  M    +   + T  +++ A +      GG 
Sbjct: 62  TQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQ 121

Query: 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
              G +L    +  ++++ Q      V+D++ R   ++ A     EM  E +   W  ++
Sbjct: 122 AVYGFVLKYGFA--FDLIVQ----NSVLDLFMRCRKVDTARQAFDEM-CEKDIVSWNMMI 174

Query: 388 ----NACRIHRNDEMFDRIRQ 404
               N  R+    + FDR+ +
Sbjct: 175 SGYGNNDRVDIARKFFDRMPE 195


>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
          Length = 803

 Score =  268 bits (685), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 141/432 (32%), Positives = 245/432 (56%), Gaps = 7/432 (1%)

Query: 28  KALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS 87
           KA+E+ + + E G   +    ++LL   +  +D+ SA  +F+ +  P V +W T++SG  
Sbjct: 334 KAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYC 393

Query: 88  KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
           +   H++ I++F  +   +V+P+  TL  +LS+CS L     G+ +H+ S+R L  N++ 
Sbjct: 394 QEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMF 453

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           + + ++D Y +CG +     +F KM +R+VV W ++I G       KEA   F++M +  
Sbjct: 454 VASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENG 513

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVG 263
              P E++  +++++CS +S++  G+ +H+ +    YD +V   VG+A+I+MY KCG++ 
Sbjct: 514 -IMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNV--YVGSALIDMYAKCGNMD 570

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
            A   F+ +  K+ ++W+ +I G A NG G +A++LF  M+     PD VTFIA+++ CS
Sbjct: 571 DARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCS 630

Query: 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 383
           H GLVD+ +  F +M   Y I+P  +HY C++D  GRAG   E EA I +MP + +  +W
Sbjct: 631 HSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIW 690

Query: 384 GALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443
             LL AC +H N E+     + L      +   + L+SN +A   R  D + +R  +   
Sbjct: 691 EVLLAACVVHHNAELGKCAAEHLFRIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNR 750

Query: 444 GLKKKTGCSWIE 455
           G+ K  G SWI+
Sbjct: 751 GVVKGRGYSWID 762



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 107/426 (25%), Positives = 191/426 (44%), Gaps = 51/426 (11%)

Query: 10  HYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN 69
           H+T    L AC            H   ++ G   + F++N+LL  Y     +  A ++F 
Sbjct: 141 HFTLASVLSACGGLAALGDGRRCHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFY 200

Query: 70  SVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLV---- 122
            +  P+ VS+T ++ GL++ G   +A+ +F   C   V  +  ++ SVL AC+       
Sbjct: 201 GMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDY 260

Query: 123 ----SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWT 178
               + +LG+AIHA  +R    ++  + N+++D Y +C  +     +F  +P   +VSW 
Sbjct: 261 SVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWN 320

Query: 179 TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST 238
            +I G+ + G C +AV V   M++    EPNE T  N+L++C                  
Sbjct: 321 ILITGFGQEGSCAKAVEVLSLMQEAG-FEPNEVTYSNLLASC------------------ 361

Query: 239 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQ 298
                             +K  DV  A  +F+ ++     +W+T++SG       +  ++
Sbjct: 362 ------------------IKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIE 403

Query: 299 LFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMY 358
           LF  M    V PD  T   ++S+CS  G++D G  +  A S  + +   M   + +VDMY
Sbjct: 404 LFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSA-SVRFLLHNDMFVASGLVDMY 462

Query: 359 GRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR-NDEMFDRIRQDLVNKKGVSVGTF 417
            + G +  A +   +M  E +   W ++++   IH  N E FD  +Q   N    +  ++
Sbjct: 463 SKCGQIGIARSIFNKM-TERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSY 521

Query: 418 ALMSNT 423
           A M N+
Sbjct: 522 ASMINS 527



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 153/303 (50%), Gaps = 14/303 (4%)

Query: 49  NSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC-GFHKEAIDMFCGIDVK-- 105
           N+ L       D+ +A  +   +   + VSW T+IS L++  G   EA++M+  +  +  
Sbjct: 78  NAALSAACRAGDLDAARDLLGGMPRRNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGL 137

Query: 106 -PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGY 164
            P   TL SVLSAC  L +   G+  H  +++   + N  ++NA+L  Y +CGS+     
Sbjct: 138 LPTHFTLASVLSACGGLAALGDGRRCHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVR 197

Query: 165 LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC---- 220
           LF  M + N VS+T M+GG A+ G   +A+ +F  M ++     +  ++ +VL AC    
Sbjct: 198 LFYGMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSG-VPVDPVSVSSVLGACAQAC 256

Query: 221 ----SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD 276
               S   A   G+ +H+ +  R        VGN++I+MY KC ++  A++VF  L    
Sbjct: 257 ATDYSVARAFRLGQAIHALV-VRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVT 315

Query: 277 KISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFK 336
            +SW+ +I+G    G   +A+++ SLM      P++VT+  L+++C     V     +F 
Sbjct: 316 IVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFD 375

Query: 337 AMS 339
            +S
Sbjct: 376 KIS 378



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 136/276 (49%), Gaps = 17/276 (6%)

Query: 108 ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFV 167
           AN LV + S  + L  H L       + R L   N    NA L    R G L +   L  
Sbjct: 46  ANRLVELYSR-AGLPRHAL------LAFRALPSPNDYSYNAALSAACRAGDLDAARDLLG 98

Query: 168 KMPKRNVVSWTTMIGGYAER-GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 226
            MP+RN VSW T+I   A   G   EAV ++  M + +   P   TL +VLSAC  ++AL
Sbjct: 99  GMPRRNAVSWNTVISALARSPGDGGEAVEMYGRM-RAEGLLPTHFTLASVLSACGGLAAL 157

Query: 227 SFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
             G+  H  ++ +  L  +  V NA++ MY KCG VG A+++F  +A  +++S++ ++ G
Sbjct: 158 GDGRRCHG-VAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGG 216

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI-LFKAMSTVYEIV 345
           LA  G    AL+LF+ M  + V  D V+  +++ AC+     D  +   F+    ++ +V
Sbjct: 217 LAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDYSVARAFRLGQAIHALV 276

Query: 346 PQM-----QHYA-CVVDMYGRAGLLEEAEAFIREMP 375
            +      QH    ++DMY +   ++EA      +P
Sbjct: 277 VRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLP 312



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 92/194 (47%), Gaps = 20/194 (10%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           ++   + +CS         +IHA V++ G+  ++++ ++L+  Y    ++  A   F+++
Sbjct: 520 SYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTM 579

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGK 128
           +  ++V+W  +I G ++ G   +A+++F      + KP+A T ++VL+ C    SH  G 
Sbjct: 580 MMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGC----SHS-GL 634

Query: 129 AIHAHSLRNLNENNI-ILDNA-----ILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMI 181
              A +  N  EN+  I+  A     ++D   R G       L  KMP K + + W  ++
Sbjct: 635 VDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLL 694

Query: 182 GG-----YAERGFC 190
                   AE G C
Sbjct: 695 AACVVHHNAELGKC 708


>gi|357129947|ref|XP_003566620.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 902

 Score =  268 bits (685), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 145/455 (31%), Positives = 253/455 (55%), Gaps = 10/455 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +  +F   + ACS     +   +IH   +++    +  + +SL+ FY    D+ S  ++ 
Sbjct: 401 DEVSFATVINACSNIRATETGKQIHCLAMKHSICSNHAVGSSLIDFYSKHGDVESCRKVL 460

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
             V    +V    +I+GL +     EAID+F  +    +KP++ T  S+LS C+ L+S  
Sbjct: 461 AQVDASSIVPRNVLIAGLVQNNREDEAIDLFQQVLRDGLKPSSFTFSSILSGCTGLLSSI 520

Query: 126 LGKAIHAHSLRN--LNENNIILDNAILDFYIRCGSLASCGYLFVKMPK-RNVVSWTTMIG 182
           +GK +H ++L++  LN++  +   +++  Y++         L ++MP  +N+V WT ++ 
Sbjct: 521 IGKQVHCYTLKSGFLNDDTSV-GVSLVGTYLKARMPEDANKLLIEMPDHKNLVEWTAIVS 579

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
           GYA+ G+  +++  F  M ++ +  P+E T  ++L ACS ++ALS GK +H  I  +   
Sbjct: 580 GYAQNGYSYQSLLSFWRM-RSYDVHPDEVTFASILKACSEMTALSDGKEIHGLI-IKSGF 637

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS-WSTVISGLAMNGCGRQALQLFS 301
                  +A+I+MY KCGD+  + + F  L  K  I+ W+++I G A NG   +AL LF 
Sbjct: 638 GSYKTATSAIIDMYSKCGDIISSFEAFKELKSKQDITLWNSMILGFAKNGYADEALLLFQ 697

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            M  + +  D+VTF+ ++ AC+H GL+ +G   F +MS VY I+P++ HYAC +D+ GR 
Sbjct: 698 KMQDSQIKSDEVTFLGVLIACAHAGLISEGRHYFDSMSKVYGIMPRVDHYACFIDLLGRG 757

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           G L+EA+  I E+P   +  +W   L ACR+H+++E  +   ++LV  +  +  T+ L+S
Sbjct: 758 GHLQEAQEVINELPFRPDGVIWATYLAACRMHKDEERGEIAAKELVELEPQNSSTYVLLS 817

Query: 422 NTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           N +A A  W +    R+ +R  G  K  GCSWI V
Sbjct: 818 NMYAAAGNWVEAKMAREAMREKGATKFPGCSWITV 852



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 195/395 (49%), Gaps = 30/395 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +T+   L AC+    H    ++    I+      +F+ N+ L  +     I  A  +F
Sbjct: 300 DEFTYVSVLGACAHLDSHCLGRQVQCVTIKNCMDASLFVANATLDMHSKFGAIDDAKTLF 359

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
           N + + D VSW  ++ GL+     +EAI M  G++   V P+  +  +V++ACS++ + +
Sbjct: 360 NLITYKDTVSWNALLVGLTHNEEDEEAIHMLKGMNLDGVTPDEVSFATVINACSNIRATE 419

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            GK IH  ++++   +N  + ++++DFY + G + SC  +  ++   ++V    +I G  
Sbjct: 420 TGKQIHCLAMKHSICSNHAVGSSLIDFYSKHGDVESCRKVLAQVDASSIVPRNVLIAGLV 479

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           +     EA+ +FQ++ +    +P+  T  ++LS C+ + +   GK VH Y      L+  
Sbjct: 480 QNNREDEAIDLFQQVLRDG-LKPSSFTFSSILSGCTGLLSSIIGKQVHCYTLKSGFLNDD 538

Query: 246 NLVGNAVINMYVKCGDVGIAIQVF-NMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
             VG +++  Y+K      A ++   M  +K+ + W+ ++SG A NG   Q+L  F  M 
Sbjct: 539 TSVGVSLVGTYLKARMPEDANKLLIEMPDHKNLVEWTAIVSGYAQNGYSYQSLLSFWRMR 598

Query: 305 INAVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
              V PD+VTF +++ ACS           HG ++  G   +K  ++             
Sbjct: 599 SYDVHPDEVTFASILKACSEMTALSDGKEIHGLIIKSGFGSYKTATSA------------ 646

Query: 354 VVDMYGRAG-LLEEAEAFIREMPIEAEWSVWGALL 387
           ++DMY + G ++   EAF +E+  + + ++W +++
Sbjct: 647 IIDMYSKCGDIISSFEAF-KELKSKQDITLWNSMI 680



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 190/385 (49%), Gaps = 13/385 (3%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           TF   L A + A    +  ++HA  + +G   ++F+ +SL++ Y     I  A  +F+  
Sbjct: 202 TFASMLSAAANATAFIEGRQVHAAAVRHGLDANVFVGSSLINLYAKCGCIGDAILVFDCS 261

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKLGK 128
              +VV W  +++GL +  +  EAI MF     + ++ +  T VSVL AC+ L SH LG+
Sbjct: 262 GEKNVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEADEFTYVSVLGACAHLDSHCLGR 321

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +   +++N  + ++ + NA LD + + G++     LF  +  ++ VSW  ++ G     
Sbjct: 322 QVQCVTIKNCMDASLFVANATLDMHSKFGAIDDAKTLFNLITYKDTVSWNALLVGLTHNE 381

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
             +EA+ + + M       P+E +   V++ACS+I A   GK +H  ++ ++ +  ++ V
Sbjct: 382 EDEEAIHMLKGM-NLDGVTPDEVSFATVINACSNIRATETGKQIHC-LAMKHSICSNHAV 439

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
           G+++I+ Y K GDV    +V   +     +  + +I+GL  N    +A+ LF  ++ + +
Sbjct: 440 GSSLIDFYSKHGDVESCRKVLAQVDASSIVPRNVLIAGLVQNNREDEAIDLFQQVLRDGL 499

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV----VDMYGRAGLL 364
            P   TF +++S C+  GL+    I+ K +         +     V    V  Y +A + 
Sbjct: 500 KPSSFTFSSILSGCT--GLLSS--IIGKQVHCYTLKSGFLNDDTSVGVSLVGTYLKARMP 555

Query: 365 EEAEAFIREMPIEAEWSVWGALLNA 389
           E+A   + EMP       W A+++ 
Sbjct: 556 EDANKLLIEMPDHKNLVEWTAIVSG 580



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 179/362 (49%), Gaps = 33/362 (9%)

Query: 76  VVSWTTIISGLSK-CGFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAI 130
            V+W  +ISG ++  G   E      DM C   + P  +T  S+LSA ++  +   G+ +
Sbjct: 164 TVAWNAVISGYAQQSGIEHEVFGLYKDMRC-WGLWPTRSTFASMLSAAANATAFIEGRQV 222

Query: 131 HAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFC 190
           HA ++R+  + N+ + +++++ Y +CG +     +F    ++NVV W  M+ G     + 
Sbjct: 223 HAAAVRHGLDANVFVGSSLINLYAKCGCIGDAILVFDCSGEKNVVMWNAMLNGLVRNEYQ 282

Query: 191 KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGN 250
            EA+ +F  M++    E +E T V+VL AC+ + +   G+ V   ++ +  +  S  V N
Sbjct: 283 VEAIQMFLYMKRLG-LEADEFTYVSVLGACAHLDSHCLGRQVQC-VTIKNCMDASLFVAN 340

Query: 251 AVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP 310
           A ++M+ K G +  A  +FN++ YKD +SW+ ++ GL  N    +A+ +   M ++ V P
Sbjct: 341 ATLDMHSKFGAIDDAKTLFNLITYKDTVSWNALLVGLTHNEEDEEAIHMLKGMNLDGVTP 400

Query: 311 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEI-VPQMQHYAC--------VVDMYGRA 361
           D+V+F  +I+ACS+           +A  T  +I    M+H  C        ++D Y + 
Sbjct: 401 DEVSFATVINACSN----------IRATETGKQIHCLAMKHSICSNHAVGSSLIDFYSKH 450

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIH--RNDEMFDRIRQDLVNKKGVSVGTFAL 419
           G +E     + +  ++A   V   +L A  +   R DE  D  +Q L  + G+   +F  
Sbjct: 451 GDVESCRKVLAQ--VDASSIVPRNVLIAGLVQNNREDEAIDLFQQVL--RDGLKPSSFTF 506

Query: 420 MS 421
            S
Sbjct: 507 SS 508



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 149/321 (46%), Gaps = 42/321 (13%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +     L ACS         + H    + G     F   +L++ Y     +  A ++F
Sbjct: 30  DQFDLAATLSACSRLGALVSGKQAHCDAEKRGLGSGAFCAAALVNMYARCGRVGDARRVF 89

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +  PD V W ++ISG  + G  +EA+ +F  ++     P+  T V+V+ A ++L    
Sbjct: 90  GGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCALTAL---- 145

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIGGY 184
                                          G L     L  +MP   + V+W  +I GY
Sbjct: 146 -------------------------------GRLEDARTLLHRMPAPSSTVAWNAVISGY 174

Query: 185 AER-GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           A++ G   E   ++++M +     P  +T  ++LSA ++ +A   G+ VH+  + R+ L 
Sbjct: 175 AQQSGIEHEVFGLYKDM-RCWGLWPTRSTFASMLSAAANATAFIEGRQVHA-AAVRHGLD 232

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
            +  VG+++IN+Y KCG +G AI VF+    K+ + W+ +++GL  N    +A+Q+F  M
Sbjct: 233 ANVFVGSSLINLYAKCGCIGDAILVFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQMFLYM 292

Query: 304 IINAVFPDDVTFIALISACSH 324
               +  D+ T+++++ AC+H
Sbjct: 293 KRLGLEADEFTYVSVLGACAH 313



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 139/322 (43%), Gaps = 40/322 (12%)

Query: 101 GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLA 160
           G  V+P+   L + LSACS L +   GK  H  + +    +      A+++ Y RCG + 
Sbjct: 24  GGGVRPDQFDLAATLSACSRLGALVSGKQAHCDAEKRGLGSGAFCAAALVNMYARCGRVG 83

Query: 161 SCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
               +F  +   + V W +MI GY   G  +EAV +F  MEK   + P+  T V V+ A 
Sbjct: 84  DARRVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMG-SSPDRVTCVAVVCAL 142

Query: 221 SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
           +++  L   +     +  R     S +  NAVI+ Y +    GI  +VF +  YKD   W
Sbjct: 143 TALGRLEDAR----TLLHRMPAPSSTVAWNAVISGYAQ--QSGIEHEVFGL--YKDMRCW 194

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340
                                      ++P   TF +++SA ++     +G  +  A + 
Sbjct: 195 --------------------------GLWPTRSTFASMLSAAANATAFIEGRQVHAA-AV 227

Query: 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFD 400
            + +   +   + ++++Y + G + +A   + +   E    +W A+LN   + RN+   +
Sbjct: 228 RHGLDANVFVGSSLINLYAKCGCIGDA-ILVFDCSGEKNVVMWNAMLNG--LVRNEYQVE 284

Query: 401 RIRQDLVNKK-GVSVGTFALMS 421
            I+  L  K+ G+    F  +S
Sbjct: 285 AIQMFLYMKRLGLEADEFTYVS 306


>gi|297848206|ref|XP_002891984.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297337826|gb|EFH68243.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 611

 Score =  268 bits (685), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 153/470 (32%), Positives = 265/470 (56%), Gaps = 15/470 (3%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK- 59
           M     S N +T +  LK+C           +H  V++ G    +++ N+L++ Y T   
Sbjct: 102 MFKQGRSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNALMNMYATCSV 161

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI-----DVKPNANTLVSV 114
            + +A  IF  +   + V+WTT+I+G +  G     + M+  +     DV P   T+   
Sbjct: 162 TMEAAFLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENADVTPYCITIA-- 219

Query: 115 LSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV 174
           + A +S+ S   GK IHA  ++   ++N+ + N+ILDFY RCG L+     F +M  +++
Sbjct: 220 VRASASIDSVTTGKQIHASVVKRGFQSNLPVMNSILDFYCRCGYLSEAKRYFHEMEDKDL 279

Query: 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
           ++W T+I    ER    EA+ +FQ  E ++   PN  T  ++++AC++I+AL+ G+ +H 
Sbjct: 280 ITWNTLISEL-ERSDSSEALLMFQRFE-SQGFVPNCYTFTSLVAACANIAALNCGQQLHG 337

Query: 235 YISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA-YKDKISWSTVISGLAMNGC 292
            I  R ++ +V   + NA+I+MY KCGD+  + +VF  +   ++ +SW++++ G   +G 
Sbjct: 338 RIYRRGFNKNVE--LANALIDMYAKCGDIPDSERVFGEIEERRNLVSWTSMMIGYGSHGY 395

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
           G +A++LF  M+ + + PD + F+A++SAC H GLV++GL  F  M + Y I P    Y 
Sbjct: 396 GAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYN 455

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRI-RQDLVNKKG 411
           CVVD+ GRAG + EA   +  MP + + S WGA+L AC+ H++  +  R+  + ++  K 
Sbjct: 456 CVVDLLGRAGKIGEAYELVERMPFKPDESTWGAILGACKAHKHTGLISRLAAKKVMELKP 515

Query: 412 VSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
             VGT+ ++S  +A   +W +  ++R  +R MG KK+ G SWIEV   +F
Sbjct: 516 RMVGTYVMLSYIYAAEGKWVEFARVRKMMRMMGNKKEAGMSWIEVENQVF 565



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 181/384 (47%), Gaps = 30/384 (7%)

Query: 43  HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI 102
           H I   N L+  Y     +  A  +F+ +   DVV+WT +I+G +   ++  A + F  +
Sbjct: 44  HHILATN-LIVSYFEKGLVEEARSLFDEMPERDVVAWTAMITGYASSNYNSCAWECFHEM 102

Query: 103 ---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSL 159
                 PN  TL SVL +C ++     G  +H   ++   E ++ +DNA+++ Y  C   
Sbjct: 103 FKQGRSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNALMNMYATCSVT 162

Query: 160 ASCGYL-FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLS 218
               +L F  +  +N V+WTT+I G+   G     + ++++M   + A+     +   + 
Sbjct: 163 MEAAFLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQM-LLENADVTPYCITIAVR 221

Query: 219 ACSSISALSFGKYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDK 277
           A +SI +++ GK +H+ +  R     SNL V N++++ Y +CG +  A + F+ +  KD 
Sbjct: 222 ASASIDSVTTGKQIHASVVKRG--FQSNLPVMNSILDFYCRCGYLSEAKRYFHEMEDKDL 279

Query: 278 ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVD-----QGL 332
           I+W+T+IS L  +    +AL +F         P+  TF +L++AC++   ++      G 
Sbjct: 280 ITWNTLISELERSDSS-EALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGR 338

Query: 333 ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI 392
           I  +  +   E+   +      +DMY + G + ++E    E+        W +++     
Sbjct: 339 IYRRGFNKNVELANAL------IDMYAKCGDIPDSERVFGEIEERRNLVSWTSMMIGYGS 392

Query: 393 H----RNDEMFDR-----IRQDLV 407
           H       E+FD+     IR D +
Sbjct: 393 HGYGAEAVELFDKMVSSGIRPDRI 416



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 135/273 (49%), Gaps = 23/273 (8%)

Query: 140 ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQE 199
           +++I+  N I+ ++ + G +     LF +MP+R+VV+WT MI GYA   +   A   F E
Sbjct: 43  KHHILATNLIVSYFEK-GLVEEARSLFDEMPERDVVAWTAMITGYASSNYNSCAWECFHE 101

Query: 200 MEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKC 259
           M K   + PNE TL +VL +C ++  L++G  VH  +  +  +  S  V NA++NMY  C
Sbjct: 102 MFKQGRS-PNEFTLSSVLKSCRNMKVLAYGALVHGVV-VKLGMEGSLYVDNALMNMYATC 159

Query: 260 G-DVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIAL 318
              +  A  +F  +  K+ ++W+T+I+G    G G   L+++  M++      DVT   +
Sbjct: 160 SVTMEAAFLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENA---DVTPYCI 216

Query: 319 ISACSHGGLVDQGLILFKAMSTVYEI-----VPQMQHYACVVDMYGRAGLLEEAEAFIRE 373
             A      +D      +  ++V +      +P M     ++D Y R G L EA+ +  E
Sbjct: 217 TIAVRASASIDSVTTGKQIHASVVKRGFQSNLPVMNS---ILDFYCRCGYLSEAKRYFHE 273

Query: 374 MPIEAEWSVWGALLNACRIHRNDE-----MFDR 401
           M  + +   W  L++   + R+D      MF R
Sbjct: 274 ME-DKDLITWNTLIS--ELERSDSSEALLMFQR 303


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  268 bits (685), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 151/386 (39%), Positives = 218/386 (56%), Gaps = 33/386 (8%)

Query: 103 DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC 162
           DV P+  T   VL AC  L     GK IH    +    +N+ L N IL+ Y  CG +   
Sbjct: 5   DVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDA 64

Query: 163 GYLFVKMPKR-------------------------------NVVSWTTMIGGYAERGFCK 191
             LF KMP+R                               NV SWT+MI G+ + G   
Sbjct: 65  MLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPN 124

Query: 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNA 251
           EA+ +F ++E  +   PNE T+V+VL+AC+ +  L  G+ VH Y ST+     +  V N 
Sbjct: 125 EAIDLFMKLED-EAVRPNEVTVVSVLAACADLGDLDLGRIVHEY-STKSGFKRNVHVCNT 182

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD 311
           +I+MYVKCG +  A +VF  +  +  +SWS +I+GLAM+G   +AL LFS MI   V P+
Sbjct: 183 LIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPN 242

Query: 312 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFI 371
            VTFI L+ ACSH GL+D+G   F +M+  Y ++PQ++HY CVVD++ RAGLLEEA  FI
Sbjct: 243 GVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFI 302

Query: 372 REMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWE 431
             MPI+    VWGALL  C++H+N ++ +   + L     ++ G + ++SN +A A+RWE
Sbjct: 303 LSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAERWE 362

Query: 432 DTNKIRDEIRRMGLKKKTGCSWIEVN 457
           D  ++R  ++  G+KK +G S I VN
Sbjct: 363 DAARVRKLMKDRGVKKTSGWSSITVN 388



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 151/313 (48%), Gaps = 36/313 (11%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFY------------- 55
           + +T +  LKAC           IH    + G   ++F+QN +L+ Y             
Sbjct: 9   DTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAMLLF 68

Query: 56  ------------------VTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAID 97
                                 DI  A+  F  +   +V SWT++ISG  +CG   EAID
Sbjct: 69  EKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAID 128

Query: 98  MFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
           +F  ++   V+PN  T+VSVL+AC+ L    LG+ +H +S ++  + N+ + N ++D Y+
Sbjct: 129 LFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYV 188

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           +CG L +   +F +M +R VVSW+ MI G A  G  +EA+ +F EM K    +PN  T +
Sbjct: 189 KCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLG-VKPNGVTFI 247

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLA 273
            +L ACS +  +  G+   + ++  Y +         V++++ + G +  A + + +M  
Sbjct: 248 GLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPI 307

Query: 274 YKDKISWSTVISG 286
             + + W  ++ G
Sbjct: 308 KPNGVVWGALLGG 320



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 8/206 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L AC+          +H +  + G   ++ + N+L+  YV    + +A ++F
Sbjct: 141 NEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVF 200

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHK 125
             +    VVSW+ +I+GL+  G  +EA+ +F     + VKPN  T + +L ACS +    
Sbjct: 201 YEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLID 260

Query: 126 LGKAIHAHSLRNLNE-NNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIGG 183
            G+   A    +      I     ++D + R G L       + MP K N V W  ++GG
Sbjct: 261 EGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGG 320

Query: 184 ---YAERGFCKEAVSVFQEMEKTKEA 206
              +      +EA+    E++   + 
Sbjct: 321 CKVHKNIDLAEEAIKHLSELDPLNDG 346


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  268 bits (685), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 154/462 (33%), Positives = 255/462 (55%), Gaps = 16/462 (3%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           TF  AL ACS         E+HA+VI+   L  + F+ ++L+  Y T + +  A Q+F+ 
Sbjct: 273 TFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDM 332

Query: 71  VVFPD----VVSWTTIISGLSKCGFHKEAIDMFCGIDVK----PNANTLVSVLSACSSLV 122
           V  PD    +  W  +I G ++ G  +EA+ +F  ++ +    P   T+ SVL AC+   
Sbjct: 333 V--PDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSE 390

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
           +    +A+H + ++     N  + NA++D Y R G       +F  +   +VVSW T+I 
Sbjct: 391 AFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLIT 450

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAE--PNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           G   +G   +A  + +EM++ +E    PN  TL+ +L  C+ ++A + GK +H Y + R+
Sbjct: 451 GCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGY-AVRH 509

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
            L     VG+A+++MY KCG + ++  VF+ L  ++ I+W+ +I    M+G G +A  LF
Sbjct: 510 ALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLF 569

Query: 301 SLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
             M  +    P++VTF+A ++ACSH G+VD+GL LF AM   + + P     ACVVD+ G
Sbjct: 570 DRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILG 629

Query: 360 RAGLLEEAEAFIREMPI-EAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFA 418
           RAG L+EA A +  M   E + S W  +L ACR+HRN  + +   + L+  +      + 
Sbjct: 630 RAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYV 689

Query: 419 LMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           L+ N ++ A +W    ++R  +RR G+ K+ GCSWIEV+ +I
Sbjct: 690 LLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAI 731



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 120/421 (28%), Positives = 189/421 (44%), Gaps = 47/421 (11%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLH--DIFIQNSLLHFYVTV 58
           M S     +H     A+K+ +     + A  IHA  +  G LH     + N+LL  Y   
Sbjct: 48  MASPQQQLDHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARC 107

Query: 59  KDIFSAHQIFNSVVFP--DVVSWTTIISGLSKCGF----HKEAIDMFCGIDVKP-NANTL 111
             + +A ++F S+     D VS+ ++IS L  C F    H  A          P  + TL
Sbjct: 108 GRLAAALEVFGSISDSAHDAVSFNSLISAL--CLFRRWDHALAALRAMLAGGHPLTSFTL 165

Query: 112 VSVLSACSSLVSH----KLGKAIHAHSLRN--LNENNIILDNAILDFYIRCGSLASCGYL 165
           VSVL A S L +     +LG+  HA +L+N  L+ +     NA+L  Y R G +A    L
Sbjct: 166 VSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRL 225

Query: 166 FV-KMPKR-NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI 223
           F    P R +VV+W TM+    + G   EAV    +M       P+  T  + L ACS +
Sbjct: 226 FAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALG-VRPDGVTFASALPACSRL 284

Query: 224 SALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI--SWS 281
             L  G+ +H+Y+    +L+ ++ V +A+++MY     VG A QVF+M+    K    W+
Sbjct: 285 ELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWN 344

Query: 282 TVISGLAMNGCGRQALQLFSLMIINAVF-PDDVTFIALISACS-----------HGGLVD 329
            +I G A  G   +AL+LF+ M   A F P + T  +++ AC+           HG +V 
Sbjct: 345 AMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVK 404

Query: 330 QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           +G+   + +               ++DMY R G  + A      + +    S W  L+  
Sbjct: 405 RGMAGNRFVQNA------------LMDMYARLGKTDVARRIFAMVDLPDVVS-WNTLITG 451

Query: 390 C 390
           C
Sbjct: 452 C 452



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 9/182 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L  C++     +  EIH + + +    D+ + ++L+  Y     +  +  +F
Sbjct: 479 NAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVF 538

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF----CGIDVKPNANTLVSVLSAC--SSLV 122
           + +   + ++W  +I      G   EA  +F       + +PN  T ++ L+AC  S +V
Sbjct: 539 DRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMV 598

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP--KRNVVSWTTM 180
              L +  HA    +  E    +   ++D   R G L     +   M   ++ V +W+TM
Sbjct: 599 DRGL-QLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTM 657

Query: 181 IG 182
           +G
Sbjct: 658 LG 659


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  268 bits (685), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 160/494 (32%), Positives = 261/494 (52%), Gaps = 48/494 (9%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           PSS    T    + AC+          + A++ E G   +  + N+L+  Y+    I +A
Sbjct: 230 PSSV---TMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAA 286

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKCGFHKEAI---DMFCGIDVKPNANTLVSVLSACSSL 121
            ++F+  V  ++V + TI+S  ++ G  +EA+   D       +P+  T++S +SA + L
Sbjct: 287 KRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQL 346

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCG------------------------ 157
           V    GK  H + +RN  E    + N I+D Y++CG                        
Sbjct: 347 VDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLT 406

Query: 158 -------SLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNE 210
                   + S   +F ++P+RN V W TMI G  ++   ++A+ +F+EM+  +  + + 
Sbjct: 407 AGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQ-GEGIKADR 465

Query: 211 ATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN 270
            T++ + SAC  + A    K+VH+YI  +  +     +  A+++M+ +CGD   A+QVFN
Sbjct: 466 VTMMGIASACGYLGAPELAKWVHTYIE-KNGIPCDMRLNTALVDMFARCGDPQSAMQVFN 524

Query: 271 MLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQ 330
            +  +D  +W+  I  +AM G G  A  LF+ M+I  V PD V F+ +++ACSHGG V+Q
Sbjct: 525 KMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQ 584

Query: 331 GLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 390
           GL +F  M   + I PQ++HY C+VD+ GRAGLL EA   I+ MP+E    VWG+LL AC
Sbjct: 585 GLHIFSLMED-HGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAAC 643

Query: 391 RIHRNDEM----FDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446
           R+H+N EM     +RI +    + GV V    L+SN +A A +W D  ++R  +R  G++
Sbjct: 644 RVHKNVEMATYAAERINELAPQRAGVHV----LLSNIYASAGKWTDVARVRLNLREKGVR 699

Query: 447 KKTGCSWIEVNPSI 460
           K  G S ++VN  I
Sbjct: 700 KVPGSSSVQVNGVI 713



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 125/434 (28%), Positives = 217/434 (50%), Gaps = 44/434 (10%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    + NHYTF   L  C+      + +++H  V++ G   D+FIQN L+HFY     
Sbjct: 122 MLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGH 181

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           +   H++F  +   +VVSWT++I G ++    KEA+ +F  +    ++P++ T+V V+SA
Sbjct: 182 MDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISA 241

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C+ L    +G+ + A+      + N ++ NA++D Y++CG++ +   LF +   RN+V +
Sbjct: 242 CAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLY 301

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
            T++  YA +G  +EA+++  EM + +   P+  T+++ +SA + +  L +GK  H Y+ 
Sbjct: 302 NTILSNYARQGLAREALAILDEMLQ-QGPRPDRVTMLSAISASAQLVDLFYGKVCHGYV- 359

Query: 238 TRYDLSVSNLVGNAVINMYVKC-------------------------------GDVGIAI 266
            R  L   + +GN +I+MY+KC                               GDV  A 
Sbjct: 360 IRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAW 419

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
           +VFN +  ++ + W+T+ISGL        A++LF  M    +  D VT + + SAC + G
Sbjct: 420 EVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLG 479

Query: 327 LVDQGLILFKAMSTVYE---IVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 383
             +    L K + T  E   I   M+    +VDM+ R G  + A     +M  E + S W
Sbjct: 480 APE----LAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKM-TERDVSAW 534

Query: 384 GALLNACRIHRNDE 397
            A +    +  N E
Sbjct: 535 TAAIGTMAMEGNGE 548



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 172/355 (48%), Gaps = 49/355 (13%)

Query: 64  AHQIFNSVVFPD--VVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSAC 118
           A ++F   V  D  +    ++I G S  G  +EAI ++     + V PN  T   VLS C
Sbjct: 82  AFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGC 141

Query: 119 SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWT 178
           + + +   G  +H   ++   E ++ + N ++ FY  CG +     +F  M +RNVVSWT
Sbjct: 142 TKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWT 201

Query: 179 TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST 238
           ++I GYA     KEAVS+F EM +     P+  T+V V+SAC+ +  L  G+ V +YI  
Sbjct: 202 SLICGYARGDRPKEAVSLFFEMVEAG-IRPSSVTMVCVISACAKLRDLDMGERVCAYIG- 259

Query: 239 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQ 298
              L ++ ++ NA+++MY+KCG +  A ++F+    ++ + ++T++S  A  G  R+AL 
Sbjct: 260 ELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALA 319

Query: 299 LFSLMIINAVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYEIVPQ 347
           +   M+     PD VT ++ ISA +           HG ++  GL  + ++  V      
Sbjct: 320 ILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNV------ 373

Query: 348 MQHYACVVDMYGRAGLLEEA-------------------EAFIREMPIEAEWSVW 383
                 ++DMY + G  E A                     FIR   +E+ W V+
Sbjct: 374 ------IIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVF 422


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  268 bits (685), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 149/456 (32%), Positives = 257/456 (56%), Gaps = 7/456 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YT+   LK C      +   +IH+ +I+     + ++ + L+  Y  +  + +A  I 
Sbjct: 489 NQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL 548

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
                 DVVSWTT+I+G ++  F  +A+  F  +    ++ +   L + +SAC+ L + K
Sbjct: 549 IRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALK 608

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ IHA +  +   +++   NA++  Y RCG +      F +    + ++W  ++ G+ 
Sbjct: 609 EGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQ 668

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS-TRYDLSV 244
           + G  +EA+ VF  M + +  + N  T  + + A S  + +  GK VH+ I+ T YD   
Sbjct: 669 QSGNNEEALRVFVRMNR-EGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSET 727

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
              V NA+I+MY KCG +  A + F  ++ K+++SW+ +I+  + +G G +AL  F  MI
Sbjct: 728 E--VCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMI 785

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
            + V P+ VT + ++SACSH GLVD+G+  F++M++ Y + P+ +HY CVVDM  RAGLL
Sbjct: 786 HSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLL 845

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
             A+ FI+EMPI+ +  VW  LL+AC +H+N E+ +     L+  +     T+ L+SN +
Sbjct: 846 SRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLY 905

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           A + +W+  +  R +++  G+KK+ G SWIEV  SI
Sbjct: 906 AVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSI 941



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 215/422 (50%), Gaps = 10/422 (2%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           Y F+  L AC      +   ++H  V++ G   D ++ N+L+  Y  + ++ SA  IF++
Sbjct: 289 YAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSN 348

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLG 127
           +   D V++ T+I+GLS+CG+ ++A+++F  +    ++P++NTL S++ ACS+  +   G
Sbjct: 349 MSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRG 408

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           + +HA++ +    +N  ++ A+L+ Y +C  + +    F++    NVV W  M+  Y   
Sbjct: 409 QQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLL 468

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
              + +  +F++M+  +E  PN+ T  ++L  C  +  L  G+ +HS I  + +  ++  
Sbjct: 469 DDLRNSFRIFRQMQ-IEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQI-IKTNFQLNAY 526

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V + +I+MY K G +  A  +    A KD +SW+T+I+G        +AL  F  M+   
Sbjct: 527 VCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRG 586

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           +  D+V     +SAC+    + +G  +  A + V      +     +V +Y R G +EE+
Sbjct: 587 IRSDEVGLTNAVSACAGLQALKEGQQI-HAQACVSGFSSDLPFQNALVTLYSRCGKIEES 645

Query: 368 E-AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAG 426
             AF  E     +   W AL++  +   N+E   R+   + N++G+    F   S   A 
Sbjct: 646 YLAF--EQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRM-NREGIDNNNFTFGSAVKAA 702

Query: 427 AD 428
           ++
Sbjct: 703 SE 704



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 190/373 (50%), Gaps = 11/373 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALE-IHAHVIEYGHLHDIFIQNSLLHFYVTVK 59
           M+S   + N  TF+  L+AC         +E IHA ++  G      + N L+  Y    
Sbjct: 177 MVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNG 236

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLS 116
            +  A ++F+ +   D  SW  +ISGLSK     EAI +FC    + + P      SVLS
Sbjct: 237 FVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLS 296

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
           AC  + S ++G+ +H   L+    ++  + NA++  Y   G+L S  ++F  M +R+ V+
Sbjct: 297 ACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVT 356

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           + T+I G ++ G+ ++A+ +F+ M      EP+  TL +++ ACS+   L  G+ +H+Y 
Sbjct: 357 YNTLINGLSQCGYGEKAMELFKRMH-LDGLEPDSNTLASLVVACSADGTLFRGQQLHAY- 414

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
           +T+   + +N +  A++N+Y KC D+  A+  F     ++ + W+ ++    +    R +
Sbjct: 415 TTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNS 474

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC--V 354
            ++F  M I  + P+  T+ +++  C   G ++ G    +  S + +   Q+  Y C  +
Sbjct: 475 FRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGE---QIHSQIIKTNFQLNAYVCSVL 531

Query: 355 VDMYGRAGLLEEA 367
           +DMY + G L+ A
Sbjct: 532 IDMYAKLGKLDTA 544



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 184/386 (47%), Gaps = 9/386 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    + ACS      +  ++HA+  + G   +  I+ +LL+ Y    DI +A   F   
Sbjct: 391 TLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLET 450

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGK 128
              +VV W  ++         + +  +F  + ++   PN  T  S+L  C  L   +LG+
Sbjct: 451 EVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGE 510

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IH+  ++   + N  + + ++D Y + G L +   + ++   ++VVSWTTMI GY +  
Sbjct: 511 QIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYN 570

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
           F  +A++ F++M   +    +E  L N +SAC+ + AL  G+ +H+        S     
Sbjct: 571 FDDKALTTFRQM-LDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS-GFSSDLPF 628

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            NA++ +Y +CG +  +   F      D I+W+ ++SG   +G   +AL++F  M    +
Sbjct: 629 QNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGI 688

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMS-TVYEIVPQMQHYACVVDMYGRAGLLEEA 367
             ++ TF + + A S    + QG  +   ++ T Y+   + +    ++ MY + G + +A
Sbjct: 689 DNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYD--SETEVCNALISMYAKCGSISDA 746

Query: 368 EAFIREMPIEAEWSVWGALLNACRIH 393
           E    E+  + E S W A++NA   H
Sbjct: 747 EKQFLEVSTKNEVS-WNAIINAYSKH 771



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 185/386 (47%), Gaps = 9/386 (2%)

Query: 9   NHYTFTQALKACSLAHPH-QKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           NH T    L+ C   +    +  ++H+ +++ G   +  +   L  FY+   D++ A ++
Sbjct: 83  NHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKV 142

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSAC-SSLVS 123
           F+ +    + +W  +I  L+      E   +F  +   +V PN  T   VL AC    V+
Sbjct: 143 FDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVA 202

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
             + + IHA  L     ++ ++ N ++D Y R G +     +F  +  ++  SW  MI G
Sbjct: 203 FDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISG 262

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
            ++     EA+ +F +M       P      +VLSAC  I +L  G+ +H  +  +   S
Sbjct: 263 LSKNECEAEAIRLFCDM-YVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLV-LKLGFS 320

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
               V NA++++Y   G++  A  +F+ ++ +D ++++T+I+GL+  G G +A++LF  M
Sbjct: 321 SDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRM 380

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
            ++ + PD  T  +L+ ACS  G + +G  L  A +T        +    ++++Y +   
Sbjct: 381 HLDGLEPDSNTLASLVVACSADGTLFRGQQL-HAYTTKLGFASNNKIEGALLNLYAKCAD 439

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNA 389
           +E A  +  E  +E    +W  +L A
Sbjct: 440 IETALDYFLETEVE-NVVLWNVMLVA 464



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 119/234 (50%), Gaps = 4/234 (1%)

Query: 91  FHKEAIDMFCGIDVKPNANTLVSVLSAC-SSLVSHKLGKAIHAHSLRNLNENNIILDNAI 149
           F ++ ID      ++PN  TL  +L  C  +  S   G+ +H+  L+   ++N  L   +
Sbjct: 67  FQEKRIDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKL 126

Query: 150 LDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN 209
            DFY+  G L     +F +MP+R + +W  MI   A R    E   +F  M  ++   PN
Sbjct: 127 FDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRM-VSENVTPN 185

Query: 210 EATLVNVLSACSSIS-ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           E T   VL AC   S A    + +H+ I  +  L  S +V N +I++Y + G V +A +V
Sbjct: 186 EGTFSGVLEACRGGSVAFDVVEQIHARILYQ-GLRDSTVVCNPLIDLYSRNGFVDLARRV 244

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
           F+ L  KD  SW  +ISGL+ N C  +A++LF  M +  + P    F +++SAC
Sbjct: 245 FDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSAC 298


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  268 bits (685), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 152/450 (33%), Positives = 250/450 (55%), Gaps = 25/450 (5%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP----------DVVSWT 80
           +IH+ +++ G  H+  +    L  +      F+A    +SV+FP          D   + 
Sbjct: 140 QIHSLILKLGLHHNPLV----LTKFAATSSHFNAVHYASSVLFPNDQTTPPPSHDAFLFN 195

Query: 81  TIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR 136
           T+I   ++    K     F        V PN  T   VL AC+ ++  +LG A+HA  ++
Sbjct: 196 TLIRAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVK 255

Query: 137 NLNENNIILDNAILDFYIRCGSLASCG-----YLFVKMPKRNVVSWTTMIGGYAERGFCK 191
              E +  + N ++  Y  C    S G      +F + P ++ V+W+ MIGGYA  G   
Sbjct: 256 FGFEEDPHVRNTLVHMYCCCCQDGSSGPVSAKKVFDESPVKDSVTWSAMIGGYARAGNSA 315

Query: 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNA 251
            AV++F+EM+ T    P+E T+V+VLSAC+ + AL  GK++ SYI  R ++  S  + NA
Sbjct: 316 RAVTLFREMQVTGVC-PDEITMVSVLSACADLGALELGKWLESYIE-RKNIMRSVELCNA 373

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD 311
           +I+M+ KCGDV  A++VF  +  +  +SW+++I GLAM+G G +A+ +F  M+   V PD
Sbjct: 374 LIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPD 433

Query: 312 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFI 371
           DV FI ++SACSH GLVD+G   F  M  ++ IVP+++HY C+VDM  RAG + EA  F+
Sbjct: 434 DVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFV 493

Query: 372 REMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWE 431
           R MP+E    +W +++ AC      ++ + + ++L+ ++      + L+SN +A   RWE
Sbjct: 494 RAMPVEPNQVIWRSIVTACHARGELKLGESVAKELIRREPSHESNYVLLSNIYAKLLRWE 553

Query: 432 DTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
              K+R+ +   G++K  G + IE+N  I+
Sbjct: 554 KKTKVREMMDVKGMRKIPGSTMIEMNNEIY 583


>gi|414586383|tpg|DAA36954.1| TPA: hypothetical protein ZEAMMB73_991125 [Zea mays]
          Length = 1021

 Score =  268 bits (685), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 150/456 (32%), Positives = 254/456 (55%), Gaps = 10/456 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +  +F  A+ ACS     +   +IH+  I+Y    +  + +SL+  Y    D+ S+ ++ 
Sbjct: 525 DEVSFATAINACSNIWAIETGKQIHSASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVL 584

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
             V    +V    +I+GL +     EAI++F  +     KP+  T  S+LS C+  VS  
Sbjct: 585 AHVDASSIVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFTSILSGCTRPVSSV 644

Query: 126 LGKAIHAHSLRN--LNENNIILDNAILDFYIRCGSLASCGYLFVKMPK-RNVVSWTTMIG 182
           +GK +H ++L++  LN++   L  +++  Y++C  L     L  ++P  +N+V WT  I 
Sbjct: 645 IGKQVHCYTLKSAILNQDTS-LGISLVGIYLKCKLLEDANKLLEEVPDHKNLVEWTATIS 703

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
           GYA+ G+  +++ +F  M ++ +   +EAT  +VL ACS ++AL+ GK +H  I     +
Sbjct: 704 GYAQNGYSVQSLVMFWRM-RSYDVRSDEATFTSVLKACSEMAALTDGKEIHGLIVKSGFV 762

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI-SWSTVISGLAMNGCGRQALQLFS 301
           S      +A+++MY KCGDV  + ++F  L  +  I  W+++I G A NG   +AL LF 
Sbjct: 763 SYETAT-SALMDMYSKCGDVISSFEIFKELKNRQNIMPWNSMIVGFAKNGYANEALLLFQ 821

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            M  + + PDDVT + ++ ACSH GL+ +GL  F +MS VY IVP++ HYAC++D+ GR 
Sbjct: 822 KMQESQIKPDDVTLLGVLIACSHAGLISEGLHFFDSMSQVYGIVPRVDHYACLIDLLGRG 881

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           G L++A+  I ++P  A+  +W   L AC++H+++E      + LV  +  S  T+  +S
Sbjct: 882 GHLQKAQEVIDQLPFRADGVIWATYLAACQMHKDEERGKVAAKKLVEMEPQSSSTYVFLS 941

Query: 422 NTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +  A A  W +    R+ +R  G+ K  GCSWI V 
Sbjct: 942 SLHAAAGNWVEAKVAREAMREKGVMKFPGCSWITVG 977



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 197/383 (51%), Gaps = 9/383 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           TF   L A +      +  +IHA  +++G   ++F+ +SL++ YV    I  A ++F+  
Sbjct: 326 TFASILSAAANMTAFDEGRQIHATAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFS 385

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              ++V W  I+ G  +    +E I MF  +   D++ +  T VSVL AC +L S  LG+
Sbjct: 386 TEKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEADDFTFVSVLGACINLYSLDLGR 445

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H  +++N  + ++ + NA+LD Y + G++     LF  +P ++ VSW  +I G A   
Sbjct: 446 QVHCITIKNGMDADLFVANAMLDMYSKLGAIDVAKALFSLIPVKDSVSWNALIVGLAHNE 505

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
              EA+++ + M K      +E +    ++ACS+I A+  GK +HS  S +Y++  ++ V
Sbjct: 506 EEGEAINMLKRM-KFYGIALDEVSFATAINACSNIWAIETGKQIHS-ASIKYNVCSNHAV 563

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
           G+++I++Y K GDV  + +V   +     +  + +I+GL  N    +A++LF  ++ +  
Sbjct: 564 GSSLIDLYSKFGDVESSRKVLAHVDASSIVPINALITGLVQNNREDEAIELFQQVLKDGF 623

Query: 309 FPDDVTFIALISACSH--GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
            P + TF +++S C+     ++ + +  +   S +      +     +V +Y +  LLE+
Sbjct: 624 KPSNFTFTSILSGCTRPVSSVIGKQVHCYTLKSAILNQDTSLG--ISLVGIYLKCKLLED 681

Query: 367 AEAFIREMPIEAEWSVWGALLNA 389
           A   + E+P       W A ++ 
Sbjct: 682 ANKLLEEVPDHKNLVEWTATISG 704



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 199/399 (49%), Gaps = 8/399 (2%)

Query: 26  HQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISG 85
           +Q+AL + + + + G + D     +++    ++  +  A  +   +     V+W  +I+ 
Sbjct: 239 YQQALALFSRMEKMGSVPDQVTCVTIISTLASMGRLGDARTLLKRIRMTSTVAWNAVIAS 298

Query: 86  LSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN 142
            S+ G   E   ++  +  +   P  +T  S+LSA +++ +   G+ IHA ++++  + N
Sbjct: 299 YSQSGLDSEVFGLYKDMKKQGLMPTRSTFASILSAAANMTAFDEGRQIHATAVKHGLDAN 358

Query: 143 IILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202
           + + +++++ Y++ G ++    +F    ++N+V W  ++ G+ +    +E + +FQ M +
Sbjct: 359 VFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMFQYMRR 418

Query: 203 TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 262
             + E ++ T V+VL AC ++ +L  G+ VH  I+ +  +     V NA+++MY K G +
Sbjct: 419 A-DLEADDFTFVSVLGACINLYSLDLGRQVHC-ITIKNGMDADLFVANAMLDMYSKLGAI 476

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
            +A  +F+++  KD +SW+ +I GLA N    +A+ +   M    +  D+V+F   I+AC
Sbjct: 477 DVAKALFSLIPVKDSVSWNALIVGLAHNEEEGEAINMLKRMKFYGIALDEVSFATAINAC 536

Query: 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
           S+   ++ G  +  A S  Y +       + ++D+Y + G +E +   +  +   +   +
Sbjct: 537 SNIWAIETGKQIHSA-SIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSIVPI 595

Query: 383 WGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
              +    + +R DE  +  +Q L  K G     F   S
Sbjct: 596 NALITGLVQNNREDEAIELFQQVL--KDGFKPSNFTFTS 632



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/393 (22%), Positives = 183/393 (46%), Gaps = 52/393 (13%)

Query: 3   SCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIF 62
           S  S+ + +     L ACS     +   ++H  V++ G    +F Q  L+  Y    ++ 
Sbjct: 150 SIGSTPDQFGIAVVLSACSRLGALEHGRQVHCDVLKSGFCSSVFCQAGLVDMYAKCGEVD 209

Query: 63  SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACS 119
            A ++F+ +  PD + WT++I+G  + G +++A+ +F  ++     P+  T V+++S  +
Sbjct: 210 DARRMFDGIACPDTICWTSMIAGYHRVGRYQQALALFSRMEKMGSVPDQVTCVTIISTLA 269

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
           S+                                   G L     L  ++   + V+W  
Sbjct: 270 SM-----------------------------------GRLGDARTLLKRIRMTSTVAWNA 294

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           +I  Y++ G   E   ++++M+K +   P  +T  ++LSA ++++A   G+ +H+  + +
Sbjct: 295 VIASYSQSGLDSEVFGLYKDMKK-QGLMPTRSTFASILSAAANMTAFDEGRQIHA-TAVK 352

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
           + L  +  VG+++IN+YVK G +  A +VF+    K+ + W+ ++ G   N    + +Q+
Sbjct: 353 HGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQM 412

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQG-----LILFKAMSTVYEIVPQMQHYACV 354
           F  M    +  DD TF++++ AC +   +D G     + +   M     +   M      
Sbjct: 413 FQYMRRADLEADDFTFVSVLGACINLYSLDLGRQVHCITIKNGMDADLFVANAM------ 466

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           +DMY + G ++ A+A    +P++   S W AL+
Sbjct: 467 LDMYSKLGAIDVAKALFSLIPVKDSVS-WNALI 498



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/310 (20%), Positives = 137/310 (44%), Gaps = 43/310 (13%)

Query: 82  IISGLSKCGFHKEAIDMF----CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRN 137
           ++S  ++ G  ++ +D F    C I   P+   +  VLSACS L + + G+ +H   L++
Sbjct: 127 VLSCHARSGSPRDVLDAFQRIRCSIGSTPDQFGIAVVLSACSRLGALEHGRQVHCDVLKS 186

Query: 138 LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVF 197
              +++     ++D Y +CG +     +F  +   + + WT+MI GY   G  ++A+++F
Sbjct: 187 GFCSSVFCQAGLVDMYAKCGEVDDARRMFDGIACPDTICWTSMIAGYHRVGRYQQALALF 246

Query: 198 QEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYV 257
             MEK     P++ T V ++S  +S+                                  
Sbjct: 247 SRMEKMGSV-PDQVTCVTIISTLASM---------------------------------- 271

Query: 258 KCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIA 317
             G +G A  +   +     ++W+ VI+  + +G   +   L+  M    + P   TF +
Sbjct: 272 --GRLGDARTLLKRIRMTSTVAWNAVIASYSQSGLDSEVFGLYKDMKKQGLMPTRSTFAS 329

Query: 318 LISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIE 377
           ++SA ++    D+G  +  A +  + +   +   + ++++Y + G + +A+  + +   E
Sbjct: 330 ILSAAANMTAFDEGRQI-HATAVKHGLDANVFVGSSLINLYVKHGCISDAKK-VFDFSTE 387

Query: 378 AEWSVWGALL 387
               +W A+L
Sbjct: 388 KNIVMWNAIL 397


>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
          Length = 551

 Score =  268 bits (684), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 150/470 (31%), Positives = 247/470 (52%), Gaps = 44/470 (9%)

Query: 30  LEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
           L +H HV+        ++   ++H     + +  A ++F  V  P++     +I   ++ 
Sbjct: 31  LRVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQN 90

Query: 90  GFHKEAIDMFCGIDVKPNAN----------TLVSVLSACSSLVSHKLGKAIHAHSLRNLN 139
             H++A+ ++  +   P +           T   +L AC    + +LGK +H H +R+  
Sbjct: 91  HQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGC 150

Query: 140 ENNIILDNAILDFYIRCGSLA-------------------------------SCGYLFVK 168
           +++ I+ N++++ Y R G LA                                   LF  
Sbjct: 151 DSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKATALFNS 210

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           MP + +V+WT M+ GY   G    AV  F+ M+ T+  EP++ ++V VL AC+ + AL  
Sbjct: 211 MPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQ-TEGFEPDDVSIVAVLPACAQLGALEL 269

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
           G+++++Y   R+ +  S  + NA++ MY KCG +  A+Q+F+ +A KD ISWSTVI GLA
Sbjct: 270 GRWIYAYCK-RHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLA 328

Query: 289 MNGCGRQALQLFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 347
            +G   +A+ LF+ M     V P+ +TF+ L+SACS+ GLVD+GL  F  M+ VY + P 
Sbjct: 329 AHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPG 388

Query: 348 MQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLV 407
           ++HY CVVD+ GR+G +  A   +R+MP+ A+  VWG+LL+ACR H + +      + LV
Sbjct: 389 VEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERLV 448

Query: 408 NKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
             +   VG   +++N +A A RW D    R  IR   ++K  GCS IEV 
Sbjct: 449 ELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIEVG 498



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 168/362 (46%), Gaps = 44/362 (12%)

Query: 1   MLSCPSSY-------NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLH 53
           ML CP+S        + +T+   LKAC      +   ++H HV+  G      +QNSL+ 
Sbjct: 103 MLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIE 162

Query: 54  FYVTVKDIFSAHQIFNSVVFPDVVSW-------------------------------TTI 82
            Y    D+  AH++F+ +   DVVSW                               T +
Sbjct: 163 MYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAM 222

Query: 83  ISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLN 139
           +SG +  G +  A+D F  +  +   P+  ++V+VL AC+ L + +LG+ I+A+  R+  
Sbjct: 223 VSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGM 282

Query: 140 ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQE 199
             +  + NA+++ Y +CG +     LF  M  ++V+SW+T+IGG A  G   EAV +F E
Sbjct: 283 LTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTE 342

Query: 200 MEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKC 259
           MEK  +  PN  T V +LSACS    +  G      ++  Y +         V+++  + 
Sbjct: 343 MEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRS 402

Query: 260 GDVGIAIQ-VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIAL 318
           G +  A+  V +M    D   W +++S    +G    A+     ++   + PDDV  + +
Sbjct: 403 GQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERLV--ELEPDDVGNLVM 460

Query: 319 IS 320
           ++
Sbjct: 461 LA 462


>gi|91806359|gb|ABE65907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 555

 Score =  268 bits (684), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 148/450 (32%), Positives = 247/450 (54%), Gaps = 9/450 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +++TFT   K+CSL+    + L++H+ +  +G   D+++   ++  Y     +  A   F
Sbjct: 77  DNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAF 136

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
           + +     VSWT +ISG  +CG    A  +F   D  P+   +V   +     V  K G 
Sbjct: 137 DEMPHRSEVSWTALISGYIRCGELDLASKLF---DQMPHVKDVVIYNAMMDGFV--KSGD 191

Query: 129 AIHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
              A  L   +    +I    ++  Y     + +   LF  MP+RN+VSW TMIGGY + 
Sbjct: 192 MTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQN 251

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
              +E +++FQEM+ T   +P++ T+++VL A S   ALS G++ H ++  R  L     
Sbjct: 252 KQPQEGITLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQ-RKKLDKKVK 310

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V  A+++MY KCG++  A ++F+ +  K   SW+ +I G A+NG  R AL LF  M+I  
Sbjct: 311 VCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEE 370

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
             PD++T +A+I+AC+HGGLV++G   F  M  +  +  +++HY C+VD+ GRAG L+EA
Sbjct: 371 K-PDEITMLAVITACNHGGLVEEGRKWFHVMREM-GLNAKIEHYGCMVDLLGRAGSLKEA 428

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
           E  I  MP E    +  + L+AC  +++ E  +RI +  V  +  + G + L+ N +A  
Sbjct: 429 EDLITNMPFEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAAD 488

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            RW+D   +++ +R+   KK+ GCS IE+N
Sbjct: 489 KRWDDFGMVKNVMRKNQAKKEVGCSLIEIN 518



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 11/209 (5%)

Query: 135 LRNLNENNIILDNAILDFYIRCGSLASCGY---LFVKMPKRNVVSWT-TMIGGYAERGFC 190
           LR+  E N+ +      F +   S    GY   LF + P+R+    + +MI  Y E    
Sbjct: 2   LRHAIETNVQI---FTKFLVISASAVGIGYARKLFDQRPQRDDSFLSNSMIKAYLETRQY 58

Query: 191 KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGN 250
            ++ ++++++ K     P+  T   +  +CS    +  G  +HS I  R+       V  
Sbjct: 59  PDSFALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQI-WRFGFCADMYVST 117

Query: 251 AVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP 310
            V++MY K G +G A   F+ + ++ ++SW+ +ISG    G    A +LF  M       
Sbjct: 118 GVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQM---PHVK 174

Query: 311 DDVTFIALISACSHGGLVDQGLILFKAMS 339
           D V + A++      G +     LF  M+
Sbjct: 175 DVVIYNAMMDGFVKSGDMTSARRLFDEMT 203


>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
 gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
 gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
          Length = 551

 Score =  268 bits (684), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 150/470 (31%), Positives = 247/470 (52%), Gaps = 44/470 (9%)

Query: 30  LEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
           L +H HV+        ++   ++H     + +  A ++F  V  P++     +I   ++ 
Sbjct: 31  LRVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQN 90

Query: 90  GFHKEAIDMFCGIDVKPNAN----------TLVSVLSACSSLVSHKLGKAIHAHSLRNLN 139
             H++A+ ++  +   P +           T   +L AC    + +LGK +H H +R+  
Sbjct: 91  HQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGC 150

Query: 140 ENNIILDNAILDFYIRCGSLA-------------------------------SCGYLFVK 168
           +++ I+ N++++ Y R G LA                                   LF  
Sbjct: 151 DSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKATALFNS 210

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           MP + +V+WT M+ GY   G    AV  F+ M+ T+  EP++ ++V VL AC+ + AL  
Sbjct: 211 MPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQ-TEGFEPDDVSIVAVLPACAQLGALEL 269

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
           G+++++Y   R+ +  S  + NA++ MY KCG +  A+Q+F+ +A KD ISWSTVI GLA
Sbjct: 270 GRWIYAYCK-RHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLA 328

Query: 289 MNGCGRQALQLFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 347
            +G   +A+ LF+ M     V P+ +TF+ L+SACS+ GLVD+GL  F  M+ VY + P 
Sbjct: 329 AHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPG 388

Query: 348 MQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLV 407
           ++HY CVVD+ GR+G +  A   +R+MP+ A+  VWG+LL+ACR H + +      + LV
Sbjct: 389 VEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERLV 448

Query: 408 NKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
             +   VG   +++N +A A RW D    R  IR   ++K  GCS IEV 
Sbjct: 449 ELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIEVG 498



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 168/362 (46%), Gaps = 44/362 (12%)

Query: 1   MLSCPSSY-------NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLH 53
           ML CP+S        + +T+   LKAC      +   ++H HV+  G      +QNSL+ 
Sbjct: 103 MLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIE 162

Query: 54  FYVTVKDIFSAHQIFNSVVFPDVVSW-------------------------------TTI 82
            Y    D+  AH++F+ +   DVVSW                               T +
Sbjct: 163 MYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAM 222

Query: 83  ISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLN 139
           +SG +  G +  A+D F  +  +   P+  ++V+VL AC+ L + +LG+ I+A+  R+  
Sbjct: 223 VSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGM 282

Query: 140 ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQE 199
             +  + NA+++ Y +CG +     LF  M  ++V+SW+T+IGG A  G   EAV +F E
Sbjct: 283 LTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTE 342

Query: 200 MEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKC 259
           MEK  +  PN  T V +LSACS    +  G      ++  Y +         V+++  + 
Sbjct: 343 MEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRS 402

Query: 260 GDVGIAIQ-VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIAL 318
           G +  A+  V +M    D   W +++S    +G    A+     ++   + PDDV  + +
Sbjct: 403 GQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERLV--ELEPDDVGNLVM 460

Query: 319 IS 320
           ++
Sbjct: 461 LA 462


>gi|115444451|ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group]
 gi|113535536|dbj|BAF07919.1| Os02g0167200, partial [Oryza sativa Japonica Group]
          Length = 526

 Score =  268 bits (684), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 141/432 (32%), Positives = 245/432 (56%), Gaps = 7/432 (1%)

Query: 28  KALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS 87
           KA+E+ + + E G   +    ++LL   +  +D+ SA  +F+ +  P V +W T++SG  
Sbjct: 57  KAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYC 116

Query: 88  KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
           +   H++ I++F  +   +V+P+  TL  +LS+CS L     G+ +H+ S+R L  N++ 
Sbjct: 117 QEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMF 176

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           + + ++D Y +CG +     +F KM +R+VV W ++I G       KEA   F++M +  
Sbjct: 177 VASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENG 236

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVG 263
              P E++  +++++CS +S++  G+ +H+ +    YD +V   VG+A+I+MY KCG++ 
Sbjct: 237 -IMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNV--YVGSALIDMYAKCGNMD 293

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
            A   F+ +  K+ ++W+ +I G A NG G +A++LF  M+     PD VTFIA+++ CS
Sbjct: 294 DARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCS 353

Query: 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 383
           H GLVD+ +  F +M   Y I+P  +HY C++D  GRAG   E EA I +MP + +  +W
Sbjct: 354 HSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIW 413

Query: 384 GALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443
             LL AC +H N E+     + L      +   + L+SN +A   R  D + +R  +   
Sbjct: 414 EVLLAACVVHHNAELGKCAAEHLFRIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNR 473

Query: 444 GLKKKTGCSWIE 455
           G+ K  G SWI+
Sbjct: 474 GVVKGRGYSWID 485



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 123/278 (44%), Gaps = 40/278 (14%)

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           N+++D Y +C  +     +F  +P   +VSW  +I G+ + G C +AV V   M++    
Sbjct: 12  NSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAG-F 70

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
           EPNE T  N+L++C                                    +K  DV  A 
Sbjct: 71  EPNEVTYSNLLASC------------------------------------IKARDVHSAR 94

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
            +F+ ++     +W+T++SG       +  ++LF  M    V PD  T   ++S+CS  G
Sbjct: 95  AMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLG 154

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 386
           ++D G  +  A S  + +   M   + +VDMY + G +  A +   +M  E +   W ++
Sbjct: 155 ILDFGRQVHSA-SVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKM-TERDVVCWNSI 212

Query: 387 LNACRIHR-NDEMFDRIRQDLVNKKGVSVGTFALMSNT 423
           ++   IH  N E FD  +Q   N    +  ++A M N+
Sbjct: 213 ISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINS 250



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 91/194 (46%), Gaps = 20/194 (10%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           ++   + +CS         +IHA V++ G+  ++++ ++L+  Y    ++  A   F+++
Sbjct: 243 SYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTM 302

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGK 128
           +  ++V+W  +I G ++ G   +A+++F      + KP+A T ++VL+ CS       G 
Sbjct: 303 MMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCS-----HSGL 357

Query: 129 AIHAHSLRNLNENNI-ILDNA-----ILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMI 181
              A +  N  EN+  I+  A     ++D   R G       L  KMP K + + W  ++
Sbjct: 358 VDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLL 417

Query: 182 GG-----YAERGFC 190
                   AE G C
Sbjct: 418 AACVVHHNAELGKC 431



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 72/146 (49%), Gaps = 8/146 (5%)

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           VGN++I+MY KC ++  A++VF  L     +SW+ +I+G    G   +A+++ SLM    
Sbjct: 10  VGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAG 69

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
             P++VT+  L+++C     V     +F  +S      P +  +  ++  Y +    ++ 
Sbjct: 70  FEPNEVTYSNLLASCIKARDVHSARAMFDKISR-----PSVTTWNTLLSGYCQEEQHQDT 124

Query: 368 EAFIREMP---IEAEWSVWGALLNAC 390
               R M    ++ + +    +L++C
Sbjct: 125 IELFRRMQHQNVQPDRTTLAVILSSC 150


>gi|218195864|gb|EEC78291.1| hypothetical protein OsI_18005 [Oryza sativa Indica Group]
          Length = 690

 Score =  268 bits (684), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 154/468 (32%), Positives = 261/468 (55%), Gaps = 14/468 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYG-HLHDIFIQNSLLHFYVTVK 59
           M    +S N +T +  LKAC      +  ++IH   +  G   HD+ + NSL+  Y   +
Sbjct: 96  MRGSGTSPNEFTLSATLKACGGGT--RAGVQIHGVCVRTGFEGHDV-VANSLVVMYSKGR 152

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVL 115
               A ++F+ +   ++ +W ++ISG +  G  ++++ +F  +    D +P+  T  S+L
Sbjct: 153 WTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLL 212

Query: 116 SACSSLVSHKLGKAIHAH-SLRNLNE-NNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
            ACS L + + G  +HA  ++R ++  +N IL  A+LD Y++C  L     +F  + +RN
Sbjct: 213 KACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRN 272

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
            + WTT+I G+A+ G  KEA+ +F+    +     +   L +V++  +  + +  GK VH
Sbjct: 273 AIQWTTVIVGHAQEGQVKEAMCLFRRFWSSG-VRADGHVLSSVVAVFADFALVEQGKQVH 331

Query: 234 SYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
            Y + T   L VS  V N++++MY+KCG  G A + F  +  ++ +SW+ +I+G+  +G 
Sbjct: 332 CYTAKTPAGLDVS--VANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGH 389

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
           GR+A+ LF  M    V  D+V ++AL+SACSH GLVD+    F  +     + P+ +HYA
Sbjct: 390 GREAIDLFEEMQAEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQDRRMRPKAEHYA 449

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           C+VD+ GRAG L EA+  I  MP+E    VW  LL+ACR+H++  +   +   L+   G 
Sbjct: 450 CMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVHKDVAVGREVGDVLLAVDGD 509

Query: 413 SVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +   + ++SN  A A  W +   IR  +RR GL+K+ GCSW EV+  +
Sbjct: 510 NPVNYVMLSNILAEAGEWRECQGIRGAMRRKGLRKQGGCSWTEVDKEV 557



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 110/384 (28%), Positives = 193/384 (50%), Gaps = 14/384 (3%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           L+A +     +  +++HA +++ G   D  + N+L+  Y     +  A ++F+ +   +V
Sbjct: 11  LRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNV 70

Query: 77  VSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAH 133
           VSWT ++ G    G  +E + +F    G    PN  TL + L AC      + G  IH  
Sbjct: 71  VSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGG--GTRAGVQIHGV 128

Query: 134 SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
            +R   E + ++ N+++  Y +         +F  +P RN+ +W +MI GYA  G  +++
Sbjct: 129 CVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDS 188

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN-LVGNAV 252
           + VF+EM++  + +P+E T  ++L ACS + A   G  VH+ ++ R     SN ++  A+
Sbjct: 189 LLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGAL 248

Query: 253 INMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD 312
           +++YVKC  + +A+QVF+ L  ++ I W+TVI G A  G  ++A+ LF     + V  D 
Sbjct: 249 LDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADG 308

Query: 313 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA---CVVDMYGRAGLLEEAEA 369
               ++++  +   LV+QG    K +       P     +    +VDMY + GL  EA  
Sbjct: 309 HVLSSVVAVFADFALVEQG----KQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGR 364

Query: 370 FIREMPIEAEWSVWGALLNACRIH 393
             REMP     S W A++N    H
Sbjct: 365 RFREMPARNVVS-WTAMINGVGKH 387



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 123/230 (53%), Gaps = 5/230 (2%)

Query: 111 LVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP 170
           +  +L A +   S + G  +HA  ++    ++ +L+N ++D Y +CG L   G +F  MP
Sbjct: 7   IADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMP 66

Query: 171 KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGK 230
           +RNVVSWT ++ G+   G  +E + +F EM  +  + PNE TL   L AC        G 
Sbjct: 67  ERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTS-PNEFTLSATLKACG--GGTRAGV 123

Query: 231 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMN 290
            +H  +  R      ++V N+++ MY K    G A +VF+++  ++  +W+++ISG A  
Sbjct: 124 QIHG-VCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHA 182

Query: 291 GCGRQALQLFSLM-IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMS 339
           G GR +L +F  M   +   PD+ TF +L+ ACS  G   +G  +  AM+
Sbjct: 183 GQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMA 232


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  268 bits (684), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 151/461 (32%), Positives = 260/461 (56%), Gaps = 19/461 (4%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLH--------DIFIQNSLLHFYVTVKDIFS 63
           + T+ +K C           IH HV  +G L          IF+ NSL+  Y     +  
Sbjct: 74  SLTRLVKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKFGLLDD 133

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKC-GFHKEAIDMFCGI---DVKPNANTLVSVLSACS 119
           A ++F+ +   +VV+WTT+++ L+   G  +EA+     +    V PNA T  SVL AC 
Sbjct: 134 ALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSSVLGACG 193

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
           +     +  A+HA +++   ++++ + ++++D Y++ G L     +F +M  R++V W +
Sbjct: 194 T---PGVLAALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWNS 250

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           +I G+A+ G    A+ +F  M K      N+ TL +VL AC+ +  L  G+ VH+++  +
Sbjct: 251 IIAGFAQSGDGVGAIELFMRM-KDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAHV-LK 308

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
           Y+  +  ++ NA+++MY KCG +  A  +F+ +  +D ISWST+ISGLA NG   +AL++
Sbjct: 309 YERDL--ILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQNGKSAEALRV 366

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
           F LM    V P+ +T + ++ ACSH GLV+ G   F++M  ++ I P+ +H+ C+VD+ G
Sbjct: 367 FDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPEREHHNCMVDLLG 426

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFAL 419
           RAG L+EA  FIR+M +E +  +W  LL ACR+H++  +     ++++  +    G   L
Sbjct: 427 RAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLAAYAAREILKLEPDDQGARVL 486

Query: 420 MSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +SNT+A   +W D  K    +R  G+KK+ G SWIE+   +
Sbjct: 487 LSNTYADLRQWTDAEKSWKAMRDRGMKKEPGRSWIELEKHV 527



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 64/116 (55%), Gaps = 5/116 (4%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S N  T T  L+AC+     +   ++HAHV++Y    D+ + N+LL  Y     +  A  
Sbjct: 277 SANQGTLTSVLRACTGMVMLEAGRQVHAHVLKYE--RDLILHNALLDMYCKCGSLEDAEA 334

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAI---DMFCGIDVKPNANTLVSVLSACS 119
           +F+ +   DV+SW+T+ISGL++ G   EA+   D+     V PN  T+V VL ACS
Sbjct: 335 LFHRMPQRDVISWSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACS 390


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  268 bits (684), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 149/456 (32%), Positives = 257/456 (56%), Gaps = 7/456 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YT+   LK C      +   +IH+ +I+     + ++ + L+  Y  +  + +A  I 
Sbjct: 449 NQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL 508

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
                 DVVSWTT+I+G ++  F  +A+  F  +    ++ +   L + +SAC+ L + K
Sbjct: 509 IRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALK 568

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ IHA +  +   +++   NA++  Y RCG +      F +    + ++W  ++ G+ 
Sbjct: 569 EGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQ 628

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS-TRYDLSV 244
           + G  +EA+ VF  M + +  + N  T  + + A S  + +  GK VH+ I+ T YD   
Sbjct: 629 QSGNNEEALRVFVRMNR-EGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSET 687

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
              V NA+I+MY KCG +  A + F  ++ K+++SW+ +I+  + +G G +AL  F  MI
Sbjct: 688 E--VCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMI 745

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
            + V P+ VT + ++SACSH GLVD+G+  F++M++ Y + P+ +HY CVVDM  RAGLL
Sbjct: 746 HSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLL 805

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
             A+ FI+EMPI+ +  VW  LL+AC +H+N E+ +     L+  +     T+ L+SN +
Sbjct: 806 SRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLY 865

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           A + +W+  +  R +++  G+KK+ G SWIEV  SI
Sbjct: 866 AVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSI 901



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 215/422 (50%), Gaps = 10/422 (2%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           Y F+  L AC      +   ++H  V++ G   D ++ N+L+  Y  + ++ SA  IF++
Sbjct: 249 YAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSN 308

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLG 127
           +   D V++ T+I+GLS+CG+ ++A+++F  +    ++P++NTL S++ ACS+  +   G
Sbjct: 309 MSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRG 368

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           + +HA++ +    +N  ++ A+L+ Y +C  + +    F++    NVV W  M+  Y   
Sbjct: 369 QQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLL 428

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
              + +  +F++M+  +E  PN+ T  ++L  C  +  L  G+ +HS I  + +  ++  
Sbjct: 429 DDLRNSFRIFRQMQ-IEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQI-IKTNFQLNAY 486

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V + +I+MY K G +  A  +    A KD +SW+T+I+G        +AL  F  M+   
Sbjct: 487 VCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRG 546

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           +  D+V     +SAC+    + +G  +  A + V      +     +V +Y R G +EE+
Sbjct: 547 IRSDEVGLTNAVSACAGLQALKEGQQI-HAQACVSGFSSDLPFQNALVTLYSRCGKIEES 605

Query: 368 E-AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAG 426
             AF  E     +   W AL++  +   N+E   R+   + N++G+    F   S   A 
Sbjct: 606 YLAF--EQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRM-NREGIDNNNFTFGSAVKAA 662

Query: 427 AD 428
           ++
Sbjct: 663 SE 664



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 190/373 (50%), Gaps = 11/373 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALE-IHAHVIEYGHLHDIFIQNSLLHFYVTVK 59
           M+S   + N  TF+  L+AC         +E IHA ++  G      + N L+  Y    
Sbjct: 137 MVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNG 196

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLS 116
            +  A ++F+ +   D  SW  +ISGLSK     EAI +FC    + + P      SVLS
Sbjct: 197 FVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLS 256

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
           AC  + S ++G+ +H   L+    ++  + NA++  Y   G+L S  ++F  M +R+ V+
Sbjct: 257 ACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVT 316

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           + T+I G ++ G+ ++A+ +F+ M      EP+  TL +++ ACS+   L  G+ +H+Y 
Sbjct: 317 YNTLINGLSQCGYGEKAMELFKRMH-LDGLEPDSNTLASLVVACSADGTLFRGQQLHAY- 374

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
           +T+   + +N +  A++N+Y KC D+  A+  F     ++ + W+ ++    +    R +
Sbjct: 375 TTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNS 434

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC--V 354
            ++F  M I  + P+  T+ +++  C   G ++ G    +  S + +   Q+  Y C  +
Sbjct: 435 FRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGE---QIHSQIIKTNFQLNAYVCSVL 491

Query: 355 VDMYGRAGLLEEA 367
           +DMY + G L+ A
Sbjct: 492 IDMYAKLGKLDTA 504



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 184/386 (47%), Gaps = 9/386 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    + ACS      +  ++HA+  + G   +  I+ +LL+ Y    DI +A   F   
Sbjct: 351 TLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLET 410

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGK 128
              +VV W  ++         + +  +F  + ++   PN  T  S+L  C  L   +LG+
Sbjct: 411 EVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGE 470

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IH+  ++   + N  + + ++D Y + G L +   + ++   ++VVSWTTMI GY +  
Sbjct: 471 QIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYN 530

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
           F  +A++ F++M   +    +E  L N +SAC+ + AL  G+ +H+        S     
Sbjct: 531 FDDKALTTFRQM-LDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS-GFSSDLPF 588

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            NA++ +Y +CG +  +   F      D I+W+ ++SG   +G   +AL++F  M    +
Sbjct: 589 QNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGI 648

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMS-TVYEIVPQMQHYACVVDMYGRAGLLEEA 367
             ++ TF + + A S    + QG  +   ++ T Y+   + +    ++ MY + G + +A
Sbjct: 649 DNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYD--SETEVCNALISMYAKCGSISDA 706

Query: 368 EAFIREMPIEAEWSVWGALLNACRIH 393
           E    E+  + E S W A++NA   H
Sbjct: 707 EKQFLEVSTKNEVS-WNAIINAYSKH 731



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 185/386 (47%), Gaps = 9/386 (2%)

Query: 9   NHYTFTQALKACSLAHPH-QKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           NH T    L+ C   +    +  ++H+ +++ G   +  +   L  FY+   D++ A ++
Sbjct: 43  NHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKV 102

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSAC-SSLVS 123
           F+ +    + +W  +I  L+      E   +F  +   +V PN  T   VL AC    V+
Sbjct: 103 FDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVA 162

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
             + + IHA  L     ++ ++ N ++D Y R G +     +F  +  ++  SW  MI G
Sbjct: 163 FDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISG 222

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
            ++     EA+ +F +M       P      +VLSAC  I +L  G+ +H  +  +   S
Sbjct: 223 LSKNECEAEAIRLFCDM-YVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLV-LKLGFS 280

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
               V NA++++Y   G++  A  +F+ ++ +D ++++T+I+GL+  G G +A++LF  M
Sbjct: 281 SDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRM 340

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
            ++ + PD  T  +L+ ACS  G + +G  L  A +T        +    ++++Y +   
Sbjct: 341 HLDGLEPDSNTLASLVVACSADGTLFRGQQL-HAYTTKLGFASNNKIEGALLNLYAKCAD 399

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNA 389
           +E A  +  E  +E    +W  +L A
Sbjct: 400 IETALDYFLETEVE-NVVLWNVMLVA 424



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 119/234 (50%), Gaps = 4/234 (1%)

Query: 91  FHKEAIDMFCGIDVKPNANTLVSVLSAC-SSLVSHKLGKAIHAHSLRNLNENNIILDNAI 149
           F ++ ID      ++PN  TL  +L  C  +  S   G+ +H+  L+   ++N  L   +
Sbjct: 27  FQEKRIDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKL 86

Query: 150 LDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN 209
            DFY+  G L     +F +MP+R + +W  MI   A R    E   +F  M  ++   PN
Sbjct: 87  FDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRM-VSENVTPN 145

Query: 210 EATLVNVLSACSSIS-ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           E T   VL AC   S A    + +H+ I  +  L  S +V N +I++Y + G V +A +V
Sbjct: 146 EGTFSGVLEACRGGSVAFDVVEQIHARILYQ-GLRDSTVVCNPLIDLYSRNGFVDLARRV 204

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
           F+ L  KD  SW  +ISGL+ N C  +A++LF  M +  + P    F +++SAC
Sbjct: 205 FDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSAC 258


>gi|242059659|ref|XP_002458975.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
 gi|241930950|gb|EES04095.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
          Length = 590

 Score =  268 bits (684), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 155/464 (33%), Positives = 248/464 (53%), Gaps = 11/464 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M SC    + YTF   LKAC  A   +  L +HA  +  G   D+F  N+L+ FY  + D
Sbjct: 104 MRSCGVRPDAYTFPAVLKACGCAPGCRAGLLVHAEAVRRGLGADLFTVNALISFYCRILD 163

Query: 61  IFSAHQIFNSV--VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSAC 118
             S  ++F+    V  D+VSW ++++G   CG    A ++F   D  P  +       A 
Sbjct: 164 CISGRKVFDEAGGVSRDLVSWNSMVAGYVGCGEMGLAQELF---DEMPQRDAFS--WGAL 218

Query: 119 SSLVSHKLGKAI-HAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
                 + G  +  A  L   + E +++  N+++D Y R G +     LF +MP+RNV+S
Sbjct: 219 IDGYGKQGGAGVDRARELFDQMTERDLVCWNSMIDGYARHGRMDEARSLFEEMPERNVIS 278

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           W+ +I G+   G  KEA+  FQ M +     P+    V  +SAC+ + AL  G+++HSY+
Sbjct: 279 WSIVIDGHVRCGEAKEALEHFQSMLRCG-IRPDRVAAVGAVSACAQLGALEQGRWLHSYL 337

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
             +  LS   +V  A+I+MY+KCG + +A+ +F  +  +  ++W+ +I GL  +G G  A
Sbjct: 338 EKKKVLS-DVVVQTALIDMYMKCGRMDLAMLIFESMPERSVVTWNVMIVGLGTHGYGLDA 396

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
           + LF  M    V  DD++ +A+++AC+H GLV +GL +F  M   + I P+++HY  +VD
Sbjct: 397 VMLFHRMEAERVAVDDLSLLAMLTACTHAGLVSEGLEIFHRMKKDFGIDPKVEHYGALVD 456

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGT 416
           + GRAG L++A   I  MP+E    +WG+LL ACR H   E+ +   + L N      G 
Sbjct: 457 LLGRAGRLDQARHAIETMPMEPTPELWGSLLAACRSHSCVELAELSVERLANLGADDSGV 516

Query: 417 FALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           + L+SN +A    W D  +IR  +   G++K  G S IEV+  I
Sbjct: 517 YVLLSNIYADEGMWGDVLRIRKLMSDEGMRKDIGRSVIEVDGEI 560


>gi|357118484|ref|XP_003560984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial-like [Brachypodium distachyon]
          Length = 678

 Score =  268 bits (684), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 143/450 (31%), Positives = 259/450 (57%), Gaps = 7/450 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YT    L AC++     +   IH  V+++G + + FI  ++L  YV   +   A Q+F
Sbjct: 227 SEYTMASVLMACTMLGSLHQGRLIHGSVMKHGLVSNHFITAAMLDMYVKCGEAEDARQVF 286

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLVSHK 125
           + + F D+V WTT+I G ++ G   +A+ +F     + + PN+ T+ +VLSA + L +  
Sbjct: 287 DELSFVDLVLWTTMIVGYTQNGSPLDALLLFVDDKFMRIVPNSVTIATVLSASAQLRNLS 346

Query: 126 LGKAIHAHSLR-NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           LG++IH  S++    EN++++ NA++D Y +C +L+    +F ++  ++VV+W ++I GY
Sbjct: 347 LGRSIHGISVKLGAVENDVVM-NALVDMYAKCKALSDAKGIFGRVLNKDVVTWNSLIAGY 405

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           AE     +A+ +F  M + + + P+  ++VN LSAC  +  L  GK  H+Y + ++    
Sbjct: 406 AENDMGSDALMLFSHM-RVQGSLPDAISVVNALSACVCLGDLLIGKCFHTY-AVKHAFMS 463

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           +  V  A++N+Y KC D+  A +VF+ +  ++ ++W  +I G  M G    ++ LF+ M+
Sbjct: 464 NIYVNTALLNLYNKCADLPSAQRVFSEMNDRNTVTWGAMIGGYGMQGDSAGSIDLFNEML 523

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
            + + P++  F +++S CSH G+V  G   F++M+  + I P M+HYAC+VD+  RAG L
Sbjct: 524 KDNIQPNEAVFTSILSTCSHTGMVTVGKKCFESMAHYFNITPSMKHYACMVDVLARAGNL 583

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           EEA  FI++MP++A+ S+W A L+ C++H   E  +     ++     +     +MSN +
Sbjct: 584 EEALEFIQKMPMQADTSIWQAFLHGCKLHSRLEFAEEAVNRMMVLHPDTPDFCVMMSNLY 643

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
               RW+ +  IR  ++  GL K  GCS +
Sbjct: 644 TSYGRWDKSLAIRKLMKERGLVKLPGCSSV 673



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 112/390 (28%), Positives = 200/390 (51%), Gaps = 9/390 (2%)

Query: 4   CPSSYNHYT-FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIF 62
           CP+        + ALKA   +        +H  V++ G   D+F+ N+L+  Y    D+ 
Sbjct: 121 CPAEQEDVVVLSLALKAAVRSADFGYGRRLHCDVVKAGG-GDLFVMNNLVDMYAKGGDLK 179

Query: 63  SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 119
           +A ++F+ +   +VVSWT+++SG  + G  KE + +F  +    + P+  T+ SVL AC+
Sbjct: 180 NARKVFDRIPDRNVVSWTSMLSGCLQNGLAKEGLVLFNEMRQESILPSEYTMASVLMACT 239

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
            L S   G+ IH   +++   +N  +  A+LD Y++CG       +F ++   ++V WTT
Sbjct: 240 MLGSLHQGRLIHGSVMKHGLVSNHFITAAMLDMYVKCGEAEDARQVFDELSFVDLVLWTT 299

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           MI GY + G   +A+ +F + +K     PN  T+  VLSA + +  LS G+ +H  IS +
Sbjct: 300 MIVGYTQNGSPLDALLLFVD-DKFMRIVPNSVTIATVLSASAQLRNLSLGRSIHG-ISVK 357

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
                +++V NA+++MY KC  +  A  +F  +  KD ++W+++I+G A N  G  AL L
Sbjct: 358 LGAVENDVVMNALVDMYAKCKALSDAKGIFGRVLNKDVVTWNSLIAGYAENDMGSDALML 417

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
           FS M +    PD ++ +  +SAC   G +  G   F   +  +  +  +     ++++Y 
Sbjct: 418 FSHMRVQGSLPDAISVVNALSACVCLGDLLIGKC-FHTYAVKHAFMSNIYVNTALLNLYN 476

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           +   L  A+    EM  +     WGA++  
Sbjct: 477 KCADLPSAQRVFSEMN-DRNTVTWGAMIGG 505



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 184/376 (48%), Gaps = 13/376 (3%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           L AC+   P  +AL  HA ++ +G L  +     LL  Y  + D+ SA ++ +    PD 
Sbjct: 35  LPACTTL-PSLRAL--HARLLAHGLLRGLRAHTKLLSCYAALGDLASARRVLDETPHPDA 91

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGIDVK-PNANTLVSVLS----ACSSLVSHKLGKAIH 131
            ++   +   +  G H EA+ +   +  + P     V VLS    A         G+ +H
Sbjct: 92  YTYKVALGWHAAAGRHAEAVAVHRDMRRRCPAEQEDVVVLSLALKAAVRSADFGYGRRLH 151

Query: 132 AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
              ++    +  +++N ++D Y + G L +   +F ++P RNVVSWT+M+ G  + G  K
Sbjct: 152 CDVVKAGGGDLFVMNN-LVDMYAKGGDLKNARKVFDRIPDRNVVSWTSMLSGCLQNGLAK 210

Query: 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNA 251
           E + +F EM + +   P+E T+ +VL AC+ + +L  G+ +H  +  ++ L  ++ +  A
Sbjct: 211 EGLVLFNEM-RQESILPSEYTMASVLMACTMLGSLHQGRLIHGSV-MKHGLVSNHFITAA 268

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD 311
           +++MYVKCG+   A QVF+ L++ D + W+T+I G   NG    AL LF       + P+
Sbjct: 269 MLDMYVKCGEAEDARQVFDELSFVDLVLWTTMIVGYTQNGSPLDALLLFVDDKFMRIVPN 328

Query: 312 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFI 371
            VT   ++SA +    +  G  +   +S     V        +VDMY +   L +A+   
Sbjct: 329 SVTIATVLSASAQLRNLSLGRSI-HGISVKLGAVENDVVMNALVDMYAKCKALSDAKGIF 387

Query: 372 REMPIEAEWSVWGALL 387
             + +  +   W +L+
Sbjct: 388 GRV-LNKDVVTWNSLI 402


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  268 bits (684), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 140/421 (33%), Positives = 249/421 (59%), Gaps = 13/421 (3%)

Query: 42  LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-- 99
           + ++ + N+++   +  K +  A  +F ++V  D ++WTT+++GL++ G   EA+D+F  
Sbjct: 212 VKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRR 271

Query: 100 -----CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154
                 GID      T  S+L+AC +L + + GK IHA+++R L + NI + +A++D Y 
Sbjct: 272 MRAEGVGID----QYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYS 327

Query: 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
           +C S+     +F +M  +N++SWT MI GY + G  +EAV VF EM+ T   +PN+ TL 
Sbjct: 328 KCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQ-TDGIKPNDFTLG 386

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
           +V+S+C+++++L  G   H  ++    L     V +A++ +Y KCG +  A ++F+ + +
Sbjct: 387 SVISSCANLASLEEGAQFHC-MALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPF 445

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
            D++S++ ++SG A  G  ++ + LF  M++  V P+ VTFI ++SACS  GLV++G   
Sbjct: 446 HDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSY 505

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F +M   + IV    HY C++D+Y R+G L+EAE FIR+MP   +   W  LL+ACR+  
Sbjct: 506 FHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRLRG 565

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           + E+     ++L+     +  ++ L+ +  A    W +   +R  +R   +KK+ GCSWI
Sbjct: 566 DMEIGKWAAENLLKTDPQNPASYVLLCSMHASKGEWSEVALLRRGMRDRQVKKEPGCSWI 625

Query: 455 E 455
           +
Sbjct: 626 K 626



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/413 (26%), Positives = 201/413 (48%), Gaps = 52/413 (12%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG------------F 91
           ++F +N+LL      + +    ++F S+   D VS+  +I+G S  G             
Sbjct: 75  NLFTRNALLSALAHARLLPDMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALL 134

Query: 92  HKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR--------------- 136
            +EA+    G  V+P+  T+  ++ A S+L    LG+ +H   +R               
Sbjct: 135 REEAV--VDGARVRPSRITMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVD 192

Query: 137 ----------------NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
                            +   N+++ N ++   +RC  +     +F  M  R+ ++WTTM
Sbjct: 193 MYAKMGLIGDAKRVFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTM 252

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTR 239
           + G  + G   EA+ VF+ M + +    ++ T  ++L+AC +++A   GK +H+Y I T 
Sbjct: 253 VTGLTQNGLQSEALDVFRRM-RAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTL 311

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
           YD ++   VG+A+++MY KC  + +A  VF  +  K+ ISW+ +I G   NGCG +A+++
Sbjct: 312 YDGNI--FVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRV 369

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
           FS M  + + P+D T  ++IS+C++   +++G   F  M+ V  + P +   + +V +YG
Sbjct: 370 FSEMQTDGIKPNDFTLGSVISSCANLASLEEG-AQFHCMALVSGLRPYITVSSALVTLYG 428

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           + G +E+A     EMP   + S    +    +  +  E  D   + L+  KGV
Sbjct: 429 KCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLL--KGV 479



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 152/288 (52%), Gaps = 7/288 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YTF   L AC      ++  +IHA+ I   +  +IF+ ++L+  Y   + I  A  +F
Sbjct: 280 DQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVF 339

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   +++SWT +I G  + G  +EA+ +F  +    +KPN  TL SV+S+C++L S +
Sbjct: 340 RRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLE 399

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G   H  +L +     I + +A++  Y +CGS+     LF +MP  + VS+T ++ GYA
Sbjct: 400 EGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYA 459

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG-KYVHSYISTRYDLSV 244
           + G  KE + +F++M   K  +PN  T + VLSACS    +  G  Y HS +   + + +
Sbjct: 460 QFGKAKETIDLFEKM-LLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHS-MQQDHGIVL 517

Query: 245 SNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDKISWSTVISGLAMNG 291
            +     +I++Y + G +  A + +  M    D I W+T++S   + G
Sbjct: 518 LDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRLRG 565



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 117/275 (42%), Gaps = 41/275 (14%)

Query: 138 LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVF 197
           + + N+   NA+L        L     LF  MP+R+ VS+  +I G++  G    A   +
Sbjct: 71  MPDPNLFTRNALLSALAHARLLPDMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAY 130

Query: 198 QEMEKTK------EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNA 251
           + + + +         P+  T+  ++ A S++   + G+ VH  I  R          + 
Sbjct: 131 RALLREEAVVDGARVRPSRITMSGMVMAASALGDRALGRQVHCQI-MRLGFGAYAFTWSP 189

Query: 252 VINMYVKCGDVGIAIQVFNMLAYK-------------------------------DKISW 280
           +++MY K G +G A +VF+ +  K                               D I+W
Sbjct: 190 LVDMYAKMGLIGDAKRVFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITW 249

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG-LILFKAMS 339
           +T+++GL  NG   +AL +F  M    V  D  TF ++++AC      ++G  I    + 
Sbjct: 250 TTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIR 309

Query: 340 TVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
           T+Y+    +   + +VDMY +   +  AEA  R M
Sbjct: 310 TLYD--GNIFVGSALVDMYSKCRSIRLAEAVFRRM 342


>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
 gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
          Length = 606

 Score =  268 bits (684), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 148/438 (33%), Positives = 254/438 (57%), Gaps = 10/438 (2%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFS---AHQIFNSVVFPDVVSWTTIISGLS 87
           ++H  ++++G   D F  +S+L     + D  S   A  IF  +  P    + T+I G  
Sbjct: 50  QVHVQILKFGLFLDSFCSSSVLA-TCALSDWNSMDYACSIFQQLDEPTTFDFNTMIRGYV 108

Query: 88  KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
                + AI ++  +   +V+P+  T   VL AC+ L   + G  IH H  +   E+++ 
Sbjct: 109 NNMNFENAIYLYNDMLQREVEPDNFTYPVVLKACARLAVIQEGMQIHGHVFKLGLEDDVY 168

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           + N++++ Y +C  +     +F +M +++V SW+ +I  +A      E +++F++M +  
Sbjct: 169 VQNSLINMYGKCRDIEMSCAIFRRMEQKSVASWSAIIAAHASLAMWWECLALFEDMSREG 228

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVH-SYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
                E+ LVNVLSAC+ + A   G+  H S +    +L+V+  V  ++++MYVKCG + 
Sbjct: 229 CWRAEESILVNVLSACTHLGAFHLGRCAHGSLLKNITELNVA--VMTSLMDMYVKCGSLQ 286

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
             + +F  +  K+++S+S +ISGL ++G GRQALQ+FS M+   + PDDVT+++++SACS
Sbjct: 287 KGLCLFQNMTRKNQLSYSVIISGLGLHGYGRQALQIFSEMVEEGLEPDDVTYVSVLSACS 346

Query: 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 383
           H GLVD+GL LF  M   Y I P MQHY C+VD+ GRAGLLEEA   ++ MPI+A   +W
Sbjct: 347 HSGLVDEGLDLFDKMKFEYRIEPTMQHYGCMVDLKGRAGLLEEAFQLVQSMPIKANDVLW 406

Query: 384 GALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443
            +LL+AC++H N ++ +   ++L      +   + ++SN +A A +WE+  KIR ++   
Sbjct: 407 RSLLSACKVHDNLKLGEIAAENLFRLSSHNPSDYLVLSNMYARAQQWENAAKIRTKMINR 466

Query: 444 GLKKKTGCSWIEVNPSIF 461
           GL +  G S +EV   ++
Sbjct: 467 GLIQTPGYSLVEVKSKVY 484



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 104/399 (26%), Positives = 193/399 (48%), Gaps = 28/399 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML      +++T+   LKAC+     Q+ ++IH HV + G   D+++QNSL++ Y   +D
Sbjct: 123 MLQREVEPDNFTYPVVLKACARLAVIQEGMQIHGHVFKLGLEDDVYVQNSLINMYGKCRD 182

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV----KPNANTLVSVLS 116
           I  +  IF  +    V SW+ II+  +      E + +F  +      +   + LV+VLS
Sbjct: 183 IEMSCAIFRRMEQKSVASWSAIIAAHASLAMWWECLALFEDMSREGCWRAEESILVNVLS 242

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
           AC+ L +  LG+  H   L+N+ E N+ +  +++D Y++CGSL     LF  M ++N +S
Sbjct: 243 ACTHLGAFHLGRCAHGSLLKNITELNVAVMTSLMDMYVKCGSLQKGLCLFQNMTRKNQLS 302

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           ++ +I G    G+ ++A+ +F EM + +  EP++ T V+VLSACS    +  G  +   +
Sbjct: 303 YSVIISGLGLHGYGRQALQIFSEMVE-EGLEPDDVTYVSVLSACSHSGLVDEGLDLFDKM 361

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DKISWSTVISGLAMNGCGR- 294
              Y +  +      ++++  + G +  A Q+   +  K + + W +++S   ++   + 
Sbjct: 362 KFEYRIEPTMQHYGCMVDLKGRAGLLEEAFQLVQSMPIKANDVLWRSLLSACKVHDNLKL 421

Query: 295 ---QALQLFSLMIINAVFPDDVTFIALISACSHG---------GLVDQGLI------LFK 336
               A  LF L   N   P D   ++ + A +            ++++GLI      L +
Sbjct: 422 GEIAAENLFRLSSHN---PSDYLVLSNMYARAQQWENAAKIRTKMINRGLIQTPGYSLVE 478

Query: 337 AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP 375
             S VY+ V Q + Y    ++Y     +E    F   MP
Sbjct: 479 VKSKVYKFVSQDKSYCKSGNIYKMIHQMEWQLRFEGYMP 517


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  268 bits (684), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 148/456 (32%), Positives = 250/456 (54%), Gaps = 6/456 (1%)

Query: 9    NHYTFTQALKACS-LAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
            + +T    L+ACS L   +  A +IHA  ++ G + D F+  +L+  Y     +  A  +
Sbjct: 1035 DQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFL 1094

Query: 68   FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSH 124
            F +    D+ SW  I+ G    G   +A+ ++  +     + +  TLV+   A   LV  
Sbjct: 1095 FVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGL 1154

Query: 125  KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
            K GK IHA  ++     ++ + + +LD Y++CG + S   +F ++P  + V+WTTMI G 
Sbjct: 1155 KQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGC 1214

Query: 185  AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
             E G  + A+  + +M  +K  +P+E T   ++ ACS ++AL  G+ +H+ I  + + + 
Sbjct: 1215 VENGQEEHALFTYHQMRLSK-VQPDEYTFATLVKACSLLTALEQGRQIHANI-VKLNCAF 1272

Query: 245  SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
               V  ++++MY KCG++  A  +F     +   SW+ +I GLA +G  ++ALQ F  M 
Sbjct: 1273 DPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMK 1332

Query: 305  INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
               V PD VTFI ++SACSH GLV +    F +M   Y I P+++HY+C+VD   RAG +
Sbjct: 1333 SRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRI 1392

Query: 365  EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
            EEAE  I  MP EA  S++  LLNACR+  + E   R+ + L+  +      + L+SN +
Sbjct: 1393 EEAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVY 1452

Query: 425  AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            A A++WE+    R+ +R++ +KK  G SW+++   +
Sbjct: 1453 AAANQWENVASARNMMRKVNVKKDPGFSWVDLKNKV 1488



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 105/376 (27%), Positives = 191/376 (50%), Gaps = 22/376 (5%)

Query: 31   EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
            +IH  V+  G    + + N L++ YV    +  A  +F  +   D++SW T+ISG +  G
Sbjct: 956  QIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSG 1015

Query: 91   FHKEAIDMFCGI---DVKPNANTLVSVLSACSSLV-SHKLGKAIHAHSLRNLNENNIILD 146
              + ++ MF  +    + P+  T+ SVL ACSSL   + L   IHA +++      ++LD
Sbjct: 1016 LEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMK----AGVVLD 1071

Query: 147  N----AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202
            +    A++D Y + G +    +LFV     ++ SW  ++ GY   G   +A+ ++  M++
Sbjct: 1072 SFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQE 1131

Query: 203  TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR-YDLSVSNLVGNAVINMYVKCGD 261
            + E   ++ TLVN   A   +  L  GK +H+ +  R ++L +   V + V++MY+KCG+
Sbjct: 1132 SGE-RSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDL--FVTSGVLDMYLKCGE 1188

Query: 262  VGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISA 321
            +  A +VF+ +   D ++W+T+ISG   NG    AL  +  M ++ V PD+ TF  L+ A
Sbjct: 1189 MESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKA 1248

Query: 322  CSHGGLVDQGLILFKAMSTVYEIVPQMQHY--ACVVDMYGRAGLLEEAEAFIREMPIEAE 379
            CS    ++QG  +    + + ++      +    +VDMY + G +E+A    +       
Sbjct: 1249 CSLLTALEQGRQIH---ANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTR-R 1304

Query: 380  WSVWGALLNACRIHRN 395
             + W A++     H N
Sbjct: 1305 IASWNAMIVGLAQHGN 1320



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 160/380 (42%), Gaps = 62/380 (16%)

Query: 7    SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
            S   +T     K C L+     +  +H + ++ G   D+F+  +L++ Y     I  A  
Sbjct: 757  STTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARV 816

Query: 67   IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNA---NTLVSVLSACSS 120
            +F+ +   DVV W  ++          EA+ +F        +P+     TL  V+    +
Sbjct: 817  LFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKN 876

Query: 121  LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
            ++  K  KA                    L  Y   GS              +V+ W   
Sbjct: 877  ILELKQFKAYATK----------------LFMYDDDGS--------------DVIVWNKA 906

Query: 181  IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
            +  + +RG   EAV  F +M  ++ A  +  T V +L+  + ++ L  GK +H  I  R 
Sbjct: 907  LSRFLQRGEAWEAVDCFVDMINSRVA-CDGLTFVVMLTVVAGLNCLELGKQIHG-IVMRS 964

Query: 241  DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
             L     VGN +INMYVK G V  A  VF  +   D ISW+T+ISG  ++G    ++ +F
Sbjct: 965  GLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMF 1024

Query: 301  SLMIINAVFPDDVTFIALISACS------------HGGLVDQGLILFKAMSTVYEIVPQM 348
              ++ +++ PD  T  +++ ACS            H   +  G++L   +ST        
Sbjct: 1025 VHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVST-------- 1076

Query: 349  QHYACVVDMYGRAGLLEEAE 368
                 ++D+Y + G +EEAE
Sbjct: 1077 ----ALIDVYSKRGKMEEAE 1092



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 161/328 (49%), Gaps = 24/328 (7%)

Query: 75   DVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIH 131
            DV+ W   +S   + G   EA+D F  +    V  +  T V +L+  + L   +LGK IH
Sbjct: 899  DVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIH 958

Query: 132  AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
               +R+  +  + + N +++ Y++ GS++    +F +M + +++SW TMI G    G  +
Sbjct: 959  GIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEE 1018

Query: 192  EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI---STRYDLSVSNLV 248
             +V +F  + +     P++ T+ +VL ACSS+     G Y+ + I   + +  + + + V
Sbjct: 1019 CSVGMFVHLLR-DSLLPDQFTVASVLRACSSLEG---GYYLATQIHACAMKAGVVLDSFV 1074

Query: 249  GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
              A+I++Y K G +  A  +F      D  SW+ ++ G  ++G   +AL+L+ LM  +  
Sbjct: 1075 STALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGE 1134

Query: 309  FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQH------YACVVDMYGRAG 362
              D +T   L++A    G    GL+  K    ++ +V +          + V+DMY + G
Sbjct: 1135 RSDQIT---LVNAAKAAG----GLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCG 1187

Query: 363  LLEEAEAFIREMPIEAEWSVWGALLNAC 390
             +E A     E+P   + + W  +++ C
Sbjct: 1188 EMESARRVFSEIPSPDDVA-WTTMISGC 1214



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 82/382 (21%), Positives = 153/382 (40%), Gaps = 69/382 (18%)

Query: 33   HAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV--VFPDVVSWTTIISGL---- 86
            HA ++  GH  D F+ N+L+  Y     + SA ++F++      D+V+W  I+S L    
Sbjct: 679  HARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHA 738

Query: 87   --SKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
              S  GFH     +     V    +TL  V   C    S    +++H ++++   + ++ 
Sbjct: 739  DKSHDGFH--LFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVF 796

Query: 145  LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
            +  A+++ Y + G +     LF  M  R+VV W  M+  Y +     EA+ +F E  +T 
Sbjct: 797  VAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTG 856

Query: 205  EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
               P++ TL                                       ++  VKC    +
Sbjct: 857  -FRPDDVTL-------------------------------------RTLSRVVKCKKNIL 878

Query: 265  AIQVFNMLAYK---------DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTF 315
             ++ F   A K         D I W+  +S     G   +A+  F  MI + V  D +TF
Sbjct: 879  ELKQFKAYATKLFMYDDDGSDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTF 938

Query: 316  IALISA-----CSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAF 370
            + +++      C   G    G+++   +  V  +        C+++MY +AG +  A + 
Sbjct: 939  VVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSV------GNCLINMYVKAGSVSRARSV 992

Query: 371  IREMPIEAEWSVWGALLNACRI 392
              +M  E +   W  +++ C +
Sbjct: 993  FGQMN-EVDLISWNTMISGCTL 1013



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 146/357 (40%), Gaps = 47/357 (13%)

Query: 104 VKPNANTLVSVLSACSSLVSH-------KLGKAIHAHSLRNLNENNIILDNAILDFYIRC 156
           + P A+ L+  L  C S++          LGK  HA  L + +  +  + N ++  Y +C
Sbjct: 646 LTPRAH-LIHSLPQCFSILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKC 704

Query: 157 GSLASCGYLFVKMP--KRNVVSWTTMIGGYAERG-FCKEAVSVFQEMEKTKEAEPNEATL 213
           GSL+S   LF   P   R++V+W  ++   A       +   +F+ + ++        TL
Sbjct: 705 GSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSV-VSTTRHTL 763

Query: 214 VNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 273
             V   C   ++ S  + +H Y + +  L     V  A++N+Y K G +  A  +F+ +A
Sbjct: 764 APVFKMCLLSASPSASESLHGY-AVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMA 822

Query: 274 YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI 333
            +D + W+ ++          +A+ LFS        PDDVT   L               
Sbjct: 823 VRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSR------------- 869

Query: 334 LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           + K    + E+  Q + YA  + MY   G               ++  VW   L+  R  
Sbjct: 870 VVKCKKNILEL-KQFKAYATKLFMYDDDG---------------SDVIVWNKALS--RFL 911

Query: 394 RNDEMFDRIR--QDLVNKKGVSVG-TFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
           +  E ++ +    D++N +    G TF +M    AG +  E   +I   + R GL +
Sbjct: 912 QRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQ 968


>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
          Length = 778

 Score =  268 bits (684), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 150/464 (32%), Positives = 259/464 (55%), Gaps = 9/464 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML       ++TF   LKAC      +     HAHV+ +G+  D+F+ NSL+  Y     
Sbjct: 91  MLQLGIQATNFTFPFLLKACGCLADFELGARAHAHVVVFGYESDVFVANSLMAMYGRFGC 150

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
              + Q+F  +   +VVSW++++   +  G ++E + +F  +    + PN  ++V+ ++ 
Sbjct: 151 FDFSRQVFERMPERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIAPNRGSIVNAMAC 210

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
                 H+         + N  +++  + NA +  Y RCG +      F  +  +++V+W
Sbjct: 211 IHR--EHEADDFCRV-VIDNGLDSDQSVQNAAMGMYARCGRIDVARRFFYGILDKDLVAW 267

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
           T+MI  Y +      A+ +F++M K     P+  TL++++ A S++++    ++VH  I 
Sbjct: 268 TSMIEAYVQADLPINALELFKQM-KLLGIVPDSVTLLSLIHAVSNLASFQLARFVHGVI- 325

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
           TR        +  AVI++YVKCG++  A + F+ ++ ++ ISWST+ISG  M+G GR+AL
Sbjct: 326 TRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMSARNLISWSTMISGYGMHGHGREAL 385

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
            LF  M   ++ PD + F+ ++SACSHGGL+ +G   FKAM+  + + P+ +HYAC+VD+
Sbjct: 386 CLFDQMKA-SIKPDHIAFVMVLSACSHGGLIAEGWECFKAMNRDFGVTPRTEHYACMVDL 444

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTF 417
            GRAG L EA+AFI  MPI  +  VWGALL ACRIH N E  +   + L N    + G +
Sbjct: 445 LGRAGRLSEAQAFIERMPITPDAGVWGALLGACRIHSNLETAETAARHLFNLDAENPGRY 504

Query: 418 ALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
            L+SN +A + + ++ + IR  ++  G++K  G + IE+   ++
Sbjct: 505 ILLSNIYASSGKRKEADDIRALMKSRGVRKTVGHTIIEIKNKVY 548


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  268 bits (684), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 153/463 (33%), Positives = 261/463 (56%), Gaps = 11/463 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML+     N +T+   L+ C+         +IH+  I+ G   D+++   L+  Y     
Sbjct: 336 MLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGW 395

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVL 115
           +  A +I + +   DVVSWT++I+G  +  F KEA++ F     CGI   P+   L S +
Sbjct: 396 LDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGI--WPDNIGLASAI 453

Query: 116 SACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVV 175
           SAC+ + +   G  IHA    +    ++ + N ++  Y RCG        F  +  +  +
Sbjct: 454 SACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGI 513

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           +W  +I G+A+ G  +EA+ VF +M++   A+ N  T V+ +SA ++++ +  GK +H+ 
Sbjct: 514 TWNGLISGFAQSGLYEEALKVFMKMDQAG-AKYNVFTFVSSISASANLADIKQGKQIHAR 572

Query: 236 -ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
            I T Y  +    + NA+I++Y KCG +  A   F  +  ++++SW+T+I+  + +G G 
Sbjct: 573 VIKTGY--TSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGL 630

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
           +AL LF  M    + P DVTF+ +++ACSH GLV++GL  FK+MS  + I P+  HYACV
Sbjct: 631 EALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACV 690

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414
           VD+ GRAG L+ A+ F+ EMPI A+  VW  LL+AC++H+N E+ +   + L+  +    
Sbjct: 691 VDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDS 750

Query: 415 GTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            ++ L+SN +A   +W   ++IR  ++  G++K+ G SWIEV 
Sbjct: 751 ASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEVK 793



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/360 (25%), Positives = 181/360 (50%), Gaps = 6/360 (1%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           Y  +  L AC+     Q    IH  V + G   + F+ N+L+  Y+  +    A ++F  
Sbjct: 144 YVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCD 203

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLG 127
           +++ D V++ T+ISG ++CG    A+ +F  +    + P++ T+ S+L+ACS++   + G
Sbjct: 204 MLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKG 263

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           K +H++ L+     + I++ ++LD Y++ G +     +F    + NVV W  M+  Y + 
Sbjct: 264 KQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQI 323

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
               ++  +F  M       PN+ T   +L  C+    +  G+ +HS ++ +        
Sbjct: 324 DDLAKSFDIFYRMLAAG-VRPNKFTYPCMLRTCTHTGEIGLGEQIHS-LTIKNGFQSDMY 381

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V   +I+MY K G +  A ++ +M+  KD +SW+++I+G   +   ++AL+ F  M    
Sbjct: 382 VSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACG 441

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           ++PD++   + ISAC+    V QG  +  A   V      +  +  +V +Y R G+ +EA
Sbjct: 442 IWPDNIGLASAISACAGIKAVHQGSQI-HARVYVSGYSADVSIWNGLVYLYARCGISKEA 500



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 189/379 (49%), Gaps = 8/379 (2%)

Query: 13  FTQALKACSLAHPHQKAL-EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           F  AL+AC  +      + EIHA  I  G      I N L+  Y     +  A ++F  +
Sbjct: 44  FACALRACRGSGRRWPLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEEL 103

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              D VSW  ++SG ++ G  +EA+ ++  +    V P    L S+LSAC+     +LG+
Sbjct: 104 SVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGR 163

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            IH    +    +   + NA++  Y+RC S      +F  M   + V++ T+I G+A+ G
Sbjct: 164 LIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCG 223

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
               A+ +F EM+ +    P+  T+ ++L+ACS++  L  GK +HSY+  +  +S+  ++
Sbjct: 224 HGDRALGIFDEMQLSG-LSPDSVTIASLLAACSAVGDLRKGKQLHSYL-LKAGMSLDYIM 281

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
             +++++YVK GD+  A+Q+F+     + + W+ ++          ++  +F  M+   V
Sbjct: 282 EGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGV 341

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            P+  T+  ++  C+H G +  G  +  +++        M     ++DMY + G L++A+
Sbjct: 342 RPNKFTYPCMLRTCTHTGEIGLGEQI-HSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQ 400

Query: 369 AFIREMPIEAEWSVWGALL 387
             I +M  E +   W +++
Sbjct: 401 R-ILDMIEEKDVVSWTSMI 418


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  268 bits (684), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 154/462 (33%), Positives = 255/462 (55%), Gaps = 16/462 (3%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           TF  AL ACS         E+HA+VI+   L  + F+ ++L+  Y T + +  A Q+F+ 
Sbjct: 121 TFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDM 180

Query: 71  VVFPD----VVSWTTIISGLSKCGFHKEAIDMFCGIDVK----PNANTLVSVLSACSSLV 122
           V  PD    +  W  +I G ++ G  +EA+ +F  ++ +    P   T+ SVL AC+   
Sbjct: 181 V--PDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSE 238

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
           +    +A+H + ++     N  + NA++D Y R G       +F  +   +VVSW T+I 
Sbjct: 239 AFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLIT 298

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAE--PNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           G   +G   +A  + +EM++ +E    PN  TL+ +L  C+ ++A + GK +H Y + R+
Sbjct: 299 GCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGY-AVRH 357

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
            L     VG+A+++MY KCG + ++  VF+ L  ++ I+W+ +I    M+G G +A  LF
Sbjct: 358 ALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLF 417

Query: 301 SLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
             M  +    P++VTF+A ++ACSH G+VD+GL LF AM   + + P     ACVVD+ G
Sbjct: 418 DRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILG 477

Query: 360 RAGLLEEAEAFIREMPI-EAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFA 418
           RAG L+EA A +  M   E + S W  +L ACR+HRN  + +   + L+  +      + 
Sbjct: 478 RAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYV 537

Query: 419 LMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           L+ N ++ A +W    ++R  +RR G+ K+ GCSWIEV+ +I
Sbjct: 538 LLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAI 579



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 117/429 (27%), Positives = 197/429 (45%), Gaps = 36/429 (8%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKAL----EIHAHVIEYG--HLHDIFIQNSLLHF 54
           ML+       +T    L+A S       A+    E HA  ++ G  H H  F  N+LL  
Sbjct: 1   MLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSM 60

Query: 55  YVTVKDIFSAHQIFNSVV--FPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNAN 109
           Y  +  +  A ++F        DVV+W T++S L + G   EA+        + V+P+  
Sbjct: 61  YARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGV 120

Query: 110 TLVSVLSACSSLVSHKLGKAIHAHSLRN--LNENNIILDNAILDFYIRCGSLASCGYLFV 167
           T  S L ACS L    +G+ +HA+ +++  L  N+ +  +A++D Y     +     +F 
Sbjct: 121 TFASALPACSRLELLDVGREMHAYVIKDDELAANSFVA-SALVDMYATHEQVGKARQVFD 179

Query: 168 KMPK--RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
            +P   + +  W  MI GYA+ G  +EA+ +F  ME      P E T+ +VL AC+   A
Sbjct: 180 MVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEA 239

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285
            +  + VH Y+  R  ++ +  V NA+++MY + G   +A ++F M+   D +SW+T+I+
Sbjct: 240 FAGKEAVHGYVVKR-GMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLIT 298

Query: 286 GLAMNGCGRQALQLFSLMII---NAVFPDDVTFIALISACS-----HGGLVDQGLILFKA 337
           G  + G    A QL   M       V P+ +T + L+  C+       G    G  +  A
Sbjct: 299 GCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHA 358

Query: 338 MSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH---- 393
           + T   +       + +VDMY + G L  + A    +P     + W  L+ A  +H    
Sbjct: 359 LDTDVAV------GSALVDMYAKCGCLALSRAVFDRLPRRNTIT-WNVLIMAYGMHGLGG 411

Query: 394 RNDEMFDRI 402
               +FDR+
Sbjct: 412 EATVLFDRM 420



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 9/182 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L  C++     +  EIH + + +    D+ + ++L+  Y     +  +  +F
Sbjct: 327 NAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVF 386

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF----CGIDVKPNANTLVSVLSAC--SSLV 122
           + +   + ++W  +I      G   EA  +F       + +PN  T ++ L+AC  S +V
Sbjct: 387 DRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMV 446

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP--KRNVVSWTTM 180
              L +  HA    +  E    +   ++D   R G L     +   M   ++ V +W+TM
Sbjct: 447 DRGL-QLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTM 505

Query: 181 IG 182
           +G
Sbjct: 506 LG 507


>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Vitis vinifera]
          Length = 550

 Score =  268 bits (684), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 147/447 (32%), Positives = 236/447 (52%), Gaps = 37/447 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +TF   LKAC+     +    +H  V   G   + F++N+L++F+    D+  A  +F
Sbjct: 112 DKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALF 171

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
           +     DVV+W+ + +G ++ G    A  +F  + VK                       
Sbjct: 172 DGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVK----------------------- 208

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
                        +++  N ++  Y + G + S   LF ++PKR+VV+W  MI GY   G
Sbjct: 209 -------------DLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCG 255

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
             ++A+ +F+EM    E  P+E T++++LSAC+ +  L  G+ +H  IS      +S L+
Sbjct: 256 SNQQALEMFEEMRSVGEL-PDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLL 314

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
           GNA+I+MY KCG +  A++VF  +  KD  +W++V+ GLA +G   +++ LF+ M    +
Sbjct: 315 GNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKI 374

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD++TF+ ++ ACSH G V++G   F  M   Y I P ++HY C+VD+ GRAGLL EA 
Sbjct: 375 RPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAF 434

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
            FI  M IE    VW  LL ACRIH N E+  R    L+  +    G + L+SN +A   
Sbjct: 435 DFIDTMKIEPNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYASRG 494

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIE 455
            W+   K+R  +   G++K+ GCS IE
Sbjct: 495 EWDGVEKVRKLMDDSGVRKEAGCSLIE 521



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 158/349 (45%), Gaps = 51/349 (14%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSS 120
           AHQ+F  +  PD   W T+I G ++      AI ++  ++   V+P+  T   VL AC+ 
Sbjct: 66  AHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTR 125

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           L   K+G  +H    R   E+N  + N ++ F+  CG LA    LF    KR+VV+W+ +
Sbjct: 126 LCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSAL 185

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
             GYA RG    A  +F EM                                        
Sbjct: 186 TAGYARRGELGVARQLFDEM---------------------------------------- 205

Query: 241 DLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
              V +LV  N +I  Y K G++  A ++F+ +  +D ++W+ +I+G  + G  +QAL++
Sbjct: 206 --PVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEM 263

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
           F  M      PD+VT ++L+SAC+  G +D G  +   +S +      +     ++DMY 
Sbjct: 264 FEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYA 323

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDRIRQ 404
           + G +  A    + M  E + S W ++L     H + E    +F  +R+
Sbjct: 324 KCGSIVRALEVFQGMR-EKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRK 371



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 107/235 (45%), Gaps = 11/235 (4%)

Query: 103 DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSL-RNLNENNIILDNAILDFYIR-CGSLA 160
           D  P+      +  +C+++ + K    IHA  + +  N N   L   I    I   G++A
Sbjct: 8   DKSPSRQQRSQLWRSCTTIGTLK---QIHASMIVKGFNSNTSALRELIYASSIAISGTMA 64

Query: 161 SCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
               LF  + + +   W TMI G A+      A+S++ +ME      P++ T   VL AC
Sbjct: 65  YAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGC-VRPDKFTFPFVLKAC 123

Query: 221 SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
           + +  +  G  VH  +  R     +  V N +I  +  CGD+ +A  +F+  A +D ++W
Sbjct: 124 TRLCWVKMGFGVHGRV-FRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAW 182

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILF 335
           S + +G A  G    A QLF  M +     D V++  +I+  +  G ++    LF
Sbjct: 183 SALTAGYARRGELGVARQLFDEMPVK----DLVSWNVMITGYAKRGEMESARKLF 233


>gi|357512007|ref|XP_003626292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355501307|gb|AES82510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 650

 Score =  268 bits (684), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 151/460 (32%), Positives = 251/460 (54%), Gaps = 9/460 (1%)

Query: 8   YNHYTFTQALKACS---LAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           ++  T T  L  C    L         IH  V   G   +I + N+L+  Y   +     
Sbjct: 144 FDKATLTTMLSGCDGLRLGISTSVTQMIHGLVFVGGFEREITVGNALITSYFKCECFSQG 203

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF----CGIDVKPNANTLVSVLSACSS 120
            ++F+ ++  +VV+WT +ISGL++  F+++++ +F    C   V PN  T +S L ACS 
Sbjct: 204 RKVFDEMIERNVVTWTAVISGLAQNEFYEDSLRLFAQMRCCGSVSPNVLTYLSSLMACSG 263

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           L   + G+ IH    +   ++++ +++A++D Y +CGSL +   +F    + + VS T +
Sbjct: 264 LQVLRDGQKIHGLLWKLGMQSDLCIESALMDLYSKCGSLDAAWQIFESAEELDGVSLTVI 323

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           +  +A+ GF +EA+ +F +M      E +   +  VL      + L+ GK +HS I  + 
Sbjct: 324 LVAFAQNGFEEEAIQIFTKMVALG-MEVDANMVSAVLGVFGVGTYLALGKQIHSLI-IKK 381

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
           +   +  VGN ++NMY KCGD+  ++ VF  +  K+ +SW++VI+  A +G G +ALQ +
Sbjct: 382 NFCENPFVGNGLVNMYSKCGDLSDSLLVFYQMTQKNSVSWNSVIAAFARHGDGFKALQFY 441

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
             M +  V P DVTF++L+ ACSH GLV++G+ L ++M+  + I P+ +HYACVVDM GR
Sbjct: 442 EEMRVEGVAPTDVTFLSLLHACSHAGLVEKGMELLESMTNDHGISPRSEHYACVVDMLGR 501

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           AG L EA+ FI  +P      VW ALL AC IH + EM       L +    S   + LM
Sbjct: 502 AGHLNEAKKFIEGLPEHGGVLVWQALLGACSIHGDSEMGKYAADRLFSAAPASPAPYVLM 561

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +N ++    W++       ++ MG+ K+ G SWIE+   +
Sbjct: 562 ANIYSSEGNWKERASSIKRMKEMGVAKEVGISWIEIEKKV 601



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 147/316 (46%), Gaps = 24/316 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHD--------IFIQNSLLHFYVTVKD 60
           NH   T  L  C           IHA +I+     D        +FI NSLL  Y    +
Sbjct: 33  NHADLTSLLTLCGRDRNLTLGSSIHARIIKQPPSFDFDGSQRNALFIWNSLLSMYSKCGE 92

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID------VKPNANTLVSV 114
             +A  +F+ +   D VSW T+ISG  + G    +   F  +        + +  TL ++
Sbjct: 93  FRNAGNVFDYMPVRDTVSWNTMISGFLRNGDFDTSFKFFKQMTESNRVCCRFDKATLTTM 152

Query: 115 LSACSSL---VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK 171
           LS C  L   +S  + + IH        E  I + NA++  Y +C   +    +F +M +
Sbjct: 153 LSGCDGLRLGISTSVTQMIHGLVFVGGFEREITVGNALITSYFKCECFSQGRKVFDEMIE 212

Query: 172 RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKY 231
           RNVV+WT +I G A+  F ++++ +F +M       PN  T ++ L ACS +  L  G+ 
Sbjct: 213 RNVVTWTAVISGLAQNEFYEDSLRLFAQMRCCGSVSPNVLTYLSSLMACSGLQVLRDGQK 272

Query: 232 VHSY---ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
           +H     +  + DL +     +A++++Y KCG +  A Q+F      D +S + ++   A
Sbjct: 273 IHGLLWKLGMQSDLCIE----SALMDLYSKCGSLDAAWQIFESAEELDGVSLTVILVAFA 328

Query: 289 MNGCGRQALQLFSLMI 304
            NG   +A+Q+F+ M+
Sbjct: 329 QNGFEEEAIQIFTKMV 344



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 140/282 (49%), Gaps = 30/282 (10%)

Query: 107 NANTLVSVLSACSSLVSHKLGKAIHAHSLRNL--------NENNIILDNAILDFYIRCGS 158
           N   L S+L+ C    +  LG +IHA  ++            N + + N++L  Y +CG 
Sbjct: 33  NHADLTSLLTLCGRDRNLTLGSSIHARIIKQPPSFDFDGSQRNALFIWNSLLSMYSKCGE 92

Query: 159 LASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA--EPNEATLVNV 216
             + G +F  MP R+ VSW TMI G+   G    +   F++M ++       ++ATL  +
Sbjct: 93  FRNAGNVFDYMPVRDTVSWNTMISGFLRNGDFDTSFKFFKQMTESNRVCCRFDKATLTTM 152

Query: 217 LSACSSIS---ALSFGKYVHSYIST-RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 272
           LS C  +    + S  + +H  +    ++  ++  VGNA+I  Y KC       +VF+ +
Sbjct: 153 LSGCDGLRLGISTSVTQMIHGLVFVGGFEREIT--VGNALITSYFKCECFSQGRKVFDEM 210

Query: 273 AYKDKISWSTVISGLAMNGCGRQALQLFSLM-IINAVFPDDVTFIALISACSHGGLVDQG 331
             ++ ++W+ VISGLA N     +L+LF+ M    +V P+ +T+++ + ACS       G
Sbjct: 211 IERNVVTWTAVISGLAQNEFYEDSLRLFAQMRCCGSVSPNVLTYLSSLMACS-------G 263

Query: 332 LILFKAMSTVYEIVPQ--MQHYACV----VDMYGRAGLLEEA 367
           L + +    ++ ++ +  MQ   C+    +D+Y + G L+ A
Sbjct: 264 LQVLRDGQKIHGLLWKLGMQSDLCIESALMDLYSKCGSLDAA 305



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 144/296 (48%), Gaps = 6/296 (2%)

Query: 1   MLSCPS-SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK 59
           M  C S S N  T+  +L ACS     +   +IH  + + G   D+ I+++L+  Y    
Sbjct: 241 MRCCGSVSPNVLTYLSSLMACSGLQVLRDGQKIHGLLWKLGMQSDLCIESALMDLYSKCG 300

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLS 116
            + +A QIF S    D VS T I+   ++ GF +EAI +F     + ++ +AN + +VL 
Sbjct: 301 SLDAAWQIFESAEELDGVSLTVILVAFAQNGFEEEAIQIFTKMVALGMEVDANMVSAVLG 360

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
                    LGK IH+  ++     N  + N +++ Y +CG L+    +F +M ++N VS
Sbjct: 361 VFGVGTYLALGKQIHSLIIKKNFCENPFVGNGLVNMYSKCGDLSDSLLVFYQMTQKNSVS 420

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           W ++I  +A  G   +A+  ++EM + +   P + T +++L ACS    +  G  +   +
Sbjct: 421 WNSVIAAFARHGDGFKALQFYEEM-RVEGVAPTDVTFLSLLHACSHAGLVEKGMELLESM 479

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA-YKDKISWSTVISGLAMNG 291
           +  + +S  +     V++M  + G +  A +    L  +   + W  ++   +++G
Sbjct: 480 TNDHGISPRSEHYACVVDMLGRAGHLNEAKKFIEGLPEHGGVLVWQALLGACSIHG 535


>gi|225435933|ref|XP_002267829.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14170-like [Vitis vinifera]
          Length = 455

 Score =  267 bits (683), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 147/427 (34%), Positives = 247/427 (57%), Gaps = 9/427 (2%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ--IFNSVVFPDVVSWTTIISGLSKC 89
           +HA ++      ++ + + LL  Y  +  + S H   +F  +   ++ SW  II   S+ 
Sbjct: 30  LHARLLRTSLYDNVILSSKLLLMYSQLGKL-SPHSLSVFLHMPHRNIYSWNIIIGEFSRS 88

Query: 90  GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
               ++ID+F  +   +  P+  TL  VL AC++  S KLG ++H   +    E ++ + 
Sbjct: 89  HLPHKSIDLFLQMRHFNQPPDVFTLPLVLRACAASGSVKLGVSVHGLCVEMGMEKSLFVA 148

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           +A++  Y+  G +     LF +MP+R+ V WT M+ GYA+      A+SVF++M     A
Sbjct: 149 SALVFMYVTFGKVLDARVLFDEMPERDAVLWTAMLAGYAQHEEPMLALSVFRQMVSAGVA 208

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
             +   ++++L AC  +  L  GK VH +I TR  L++   +GNA++  YVKC  +G + 
Sbjct: 209 L-DGVVMISLLLACGQLGWLKHGKSVHGWI-TRRCLALGLNLGNALVYFYVKCAALGYSY 266

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
            +F+ +  +D ISWS++I G  ++G    AL LF  M +  V P+DVTF+  +SAC+H G
Sbjct: 267 NLFDKMPERDVISWSSIILGYGLSGNVDIALDLFDRMRVAGVKPNDVTFLGALSACTHTG 326

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 386
           +V++    F+ M   Y + P+++HYAC+VD  GRAG+LE+AE FI EMP+EA+ +V GAL
Sbjct: 327 MVERAHTYFEMMKE-YGVAPELKHYACMVDCLGRAGMLEDAERFIEEMPVEADGAVLGAL 385

Query: 387 LNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446
           L  CR+H N E+ +R+ + L+  +      + +++N +AGA R+ED  K+R  +++  L 
Sbjct: 386 LGGCRVHGNAEVGERVAKKLMGLEPEKASNYVMLANIYAGAGRFEDAEKVRQLMKQRKLS 445

Query: 447 KKTGCSW 453
           K  GCS+
Sbjct: 446 KVPGCSF 452



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 114/217 (52%), Gaps = 10/217 (4%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +T    L+AC+ +   +  + +H   +E G    +F+ ++L+  YVT   +  A  +F+ 
Sbjct: 111 FTLPLVLRACAASGSVKLGVSVHGLCVEMGMEKSLFVASALVFMYVTFGKVLDARVLFDE 170

Query: 71  VVFPDVVSWTTIISGLSKCGFHKE---AIDMF---CGIDVKPNANTLVSVLSACSSLVSH 124
           +   D V WT +++G ++   H+E   A+ +F       V  +   ++S+L AC  L   
Sbjct: 171 MPERDAVLWTAMLAGYAQ---HEEPMLALSVFRQMVSAGVALDGVVMISLLLACGQLGWL 227

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           K GK++H    R      + L NA++ FY++C +L     LF KMP+R+V+SW+++I GY
Sbjct: 228 KHGKSVHGWITRRCLALGLNLGNALVYFYVKCAALGYSYNLFDKMPERDVISWSSIILGY 287

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221
              G    A+ +F  M +    +PN+ T +  LSAC+
Sbjct: 288 GLSGNVDIALDLFDRM-RVAGVKPNDVTFLGALSACT 323



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 113/228 (49%), Gaps = 3/228 (1%)

Query: 105 KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGY 164
           KP +N + S  +   S  +    + +HA  LR    +N+IL + +L  Y + G L+    
Sbjct: 5   KPKSNLVSSYFALLHSSPNPTHLRHLHARLLRTSLYDNVILSSKLLLMYSQLGKLSPHSL 64

Query: 165 -LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI 223
            +F+ MP RN+ SW  +IG ++      +++ +F +M    +  P+  TL  VL AC++ 
Sbjct: 65  SVFLHMPHRNIYSWNIIIGEFSRSHLPHKSIDLFLQMRHFNQP-PDVFTLPLVLRACAAS 123

Query: 224 SALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTV 283
            ++  G  VH  +     +  S  V +A++ MYV  G V  A  +F+ +  +D + W+ +
Sbjct: 124 GSVKLGVSVHG-LCVEMGMEKSLFVASALVFMYVTFGKVLDARVLFDEMPERDAVLWTAM 182

Query: 284 ISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG 331
           ++G A +     AL +F  M+   V  D V  I+L+ AC   G +  G
Sbjct: 183 LAGYAQHEEPMLALSVFRQMVSAGVALDGVVMISLLLACGQLGWLKHG 230


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  267 bits (683), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 142/439 (32%), Positives = 263/439 (59%), Gaps = 12/439 (2%)

Query: 28  KALEIHAHVIEYG-HLHDIFIQNSLLHFYVTVKD---IFSAHQIFNSVVFP-DVVSWTTI 82
           K  +IHA  I +G  + D  +   L+ + V++     +  AH++F+ +  P +V  W T+
Sbjct: 32  KLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTL 91

Query: 83  ISGLSKCGFHKEAIDMFCGIDV----KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNL 138
           I G ++ G    A  ++  + V    +P+ +T   ++ A +++   +LG+ IH+  +R+ 
Sbjct: 92  IRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSG 151

Query: 139 NENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQ 198
             + I + N++L  Y  CG +AS   +F KMP++++V+W ++I G+AE G  +EA++++ 
Sbjct: 152 FGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYT 211

Query: 199 EMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVK 258
           EM  +K  +P+  T+V++LSAC+ I AL+ GK VH Y+  +  L+ +    N ++++Y +
Sbjct: 212 EMN-SKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM-IKVGLTRNLHSSNVLLDLYAR 269

Query: 259 CGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM-IINAVFPDDVTFIA 317
           CG V  A  +F+ +  K+ +SW+++I GLA+NG G++A++LF  M     + P ++TF+ 
Sbjct: 270 CGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVG 329

Query: 318 LISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIE 377
           ++ ACSH G+V +G   F+ M   Y+I P+++H+ C+VD+  RAG +++A  +I+ MP++
Sbjct: 330 ILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQ 389

Query: 378 AEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIR 437
               +W  LL AC +H + ++ +  R  ++  +    G + L+SN +A   RW D  KIR
Sbjct: 390 PNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIR 449

Query: 438 DEIRRMGLKKKTGCSWIEV 456
            ++ R G+KK  G S +EV
Sbjct: 450 KQMLRDGVKKVPGHSLVEV 468


>gi|115461454|ref|NP_001054327.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|38345824|emb|CAE01858.2| OSJNBa0070M12.7 [Oryza sativa Japonica Group]
 gi|113565898|dbj|BAF16241.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|215766744|dbj|BAG98972.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222629815|gb|EEE61947.1| hypothetical protein OsJ_16704 [Oryza sativa Japonica Group]
          Length = 690

 Score =  267 bits (683), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 154/468 (32%), Positives = 261/468 (55%), Gaps = 14/468 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYG-HLHDIFIQNSLLHFYVTVK 59
           M    +S N +T +  LKAC      +  ++IH   +  G   HD+ + NSL+  Y   +
Sbjct: 96  MRGSGTSPNEFTLSATLKACGGGT--RAGVQIHGVCVRTGFEGHDV-VANSLVVMYSKGR 152

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVL 115
               A ++F+ +   ++ +W ++ISG +  G  ++++ +F  +    D +P+  T  S+L
Sbjct: 153 WTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLL 212

Query: 116 SACSSLVSHKLGKAIHAH-SLRNLNE-NNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
            ACS L + + G  +HA  ++R ++  +N IL  A+LD Y++C  L     +F  + +RN
Sbjct: 213 KACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRN 272

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
            + WTT+I G+A+ G  KEA+ +F+    +     +   L +V++  +  + +  GK VH
Sbjct: 273 AIQWTTVIVGHAQEGQVKEAMCLFRRFWSSG-VRADGHVLSSVVAVFADFALVEQGKQVH 331

Query: 234 SYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
            Y + T   L VS  V N++++MY+KCG  G A + F  +  ++ +SW+ +I+G+  +G 
Sbjct: 332 CYTAKTPAGLDVS--VANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGH 389

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
           GR+A+ LF  M    V  D+V ++AL+SACSH GLVD+    F  +     + P+ +HYA
Sbjct: 390 GREAIDLFEEMQEEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQDRRMRPKAEHYA 449

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412
           C+VD+ GRAG L EA+  I  MP+E    VW  LL+ACR+H++  +   +   L+   G 
Sbjct: 450 CMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVHKDVAVGREVGDVLLAVDGD 509

Query: 413 SVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +   + ++SN  A A  W +   IR  +RR GL+K+ GCSW EV+  +
Sbjct: 510 NPVNYVMLSNILAEAGEWRECQGIRGAMRRKGLRKQGGCSWTEVDKEV 557



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/416 (27%), Positives = 208/416 (50%), Gaps = 20/416 (4%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           L+A +     +  +++HA +++ G   D  + N+L+  Y     +  A ++F+ +   +V
Sbjct: 11  LRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNV 70

Query: 77  VSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAH 133
           VSWT ++ G    G  +E + +F    G    PN  TL + L AC      + G  IH  
Sbjct: 71  VSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGG--GTRAGVQIHGV 128

Query: 134 SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
            +R   E + ++ N+++  Y +         +F  +P RN+ +W +MI GYA  G  +++
Sbjct: 129 CVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDS 188

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN-LVGNAV 252
           + VF+EM++  + +P+E T  ++L ACS + A   G  VH+ ++ R     SN ++  A+
Sbjct: 189 LLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGAL 248

Query: 253 INMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD 312
           +++YVKC  + +A+QVF+ L  ++ I W+TVI G A  G  ++A+ LF     + V  D 
Sbjct: 249 LDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADG 308

Query: 313 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA---CVVDMYGRAGLLEEAEA 369
               ++++  +   LV+QG    K +       P     +    +VDMY + GL  EA  
Sbjct: 309 HVLSSVVAVFADFALVEQG----KQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGR 364

Query: 370 FIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQDLVNKKGVSVGTFALMS 421
             REMP     S W A++N    H +     ++F+ ++++ V      V   AL+S
Sbjct: 365 RFREMPARNVVS-WTAMINGVGKHGHGREAIDLFEEMQEEGVEAD--EVAYLALLS 417



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 123/230 (53%), Gaps = 5/230 (2%)

Query: 111 LVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP 170
           +  +L A +   S + G  +HA  ++    ++ +L+N ++D Y +CG L   G +F  MP
Sbjct: 7   IADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMP 66

Query: 171 KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGK 230
           +RNVVSWT ++ G+   G  +E + +F EM  +  + PNE TL   L AC        G 
Sbjct: 67  ERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTS-PNEFTLSATLKACG--GGTRAGV 123

Query: 231 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMN 290
            +H  +  R      ++V N+++ MY K    G A +VF+++  ++  +W+++ISG A  
Sbjct: 124 QIHG-VCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHA 182

Query: 291 GCGRQALQLFSLM-IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMS 339
           G GR +L +F  M   +   PD+ TF +L+ ACS  G   +G  +  AM+
Sbjct: 183 GQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMA 232


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  267 bits (683), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 147/458 (32%), Positives = 254/458 (55%), Gaps = 8/458 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YT     KA           E+     E G   ++ +  +L+  Y     +  A  +F
Sbjct: 267 NMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVF 326

Query: 69  NSVVFPDVVS--WTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVS 123
           ++      V+  W  +ISG S+ G  +EA++++   C   +  +  T  SV +A ++  S
Sbjct: 327 DTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKS 386

Query: 124 HKLGKAIHAHSLR-NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
            + G+ +H   L+  L+   + ++NAI D Y +CG L     +F +M +R++VSWTT++ 
Sbjct: 387 LQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVT 446

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
            Y++    +EA++ F  M +   A PN+ T  +VL +C+S+  L +G+ VH  +  +  L
Sbjct: 447 AYSQSSLGEEALATFCLMREEGFA-PNQFTFSSVLISCASLCFLEYGRQVHGLL-CKAGL 504

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
                + +A+I+MY KCG +  A +VF+ ++  D +SW+ +ISG A +G    ALQLF  
Sbjct: 505 DTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRR 564

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
           M ++ +  + VT + ++ ACSHGG+V++GL  F+ M   Y +VP+M+HYAC++D+ GR G
Sbjct: 565 MELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVG 624

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSN 422
            L++A  FIR+MP+E    VW  LL  CR+H N E+ +   + +++ +     T+ L+SN
Sbjct: 625 RLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIRPEYSATYVLLSN 684

Query: 423 TFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           T+     +ED   +R+ ++  G+KK+ G SWI V   +
Sbjct: 685 TYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVKGRV 722



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 179/386 (46%), Gaps = 22/386 (5%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHD---IFIQNSLLHFYVTVKDIFSAHQIFNSVVF 73
           L+ C+     ++A  +H  V++  +  D   + + N   H Y    +  +A  +F+ +  
Sbjct: 71  LRDCAEKGSIREAKAVHGLVLK-SNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQ 129

Query: 74  PDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAI 130
            +V SWT +I G ++ G   +    FC +    + P+     +++ +C  L S +LGK +
Sbjct: 130 RNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMV 189

Query: 131 HAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFC 190
           HA  +      +I +  ++L+ Y + GS+    ++F  M + N VSW  MI G    G  
Sbjct: 190 HAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLH 249

Query: 191 KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGN 250
            EA  +F  M K     PN  TLV+V  A   +  ++ GK V +  ++   +  + LVG 
Sbjct: 250 LEAFDLFVRM-KNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQN-CASELGIEGNVLVGT 307

Query: 251 AVINMYVKCGDVGIAIQVF--NMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
           A+I+MY KCG +  A  VF  N +       W+ +ISG + +GC ++AL+L+  M  N +
Sbjct: 308 ALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGI 367

Query: 309 FPDDVTFIALISACSHG-----GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
             D  T+ ++ +A +       G V  G++L   +  +   V        + D Y + G 
Sbjct: 368 TSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNN-----AIADAYSKCGF 422

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNA 389
           LE+       M  E +   W  L+ A
Sbjct: 423 LEDVRKVFDRME-ERDIVSWTTLVTA 447


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  267 bits (683), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 147/419 (35%), Positives = 232/419 (55%), Gaps = 7/419 (1%)

Query: 42  LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG 101
           + D    N+++  Y     +  A ++F+     DV +WT ++SG  + G   EA   F  
Sbjct: 232 VRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFF-- 289

Query: 102 IDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLAS 161
            D  P  N  VS  +  +  V  K    I      ++   NI   N ++  Y + G +A 
Sbjct: 290 -DEMPEKNE-VSYNAMIAGYVQTK-KMDIARELFESMPCRNISSWNTMITGYGQIGDIAQ 346

Query: 162 CGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221
               F  MP+R+ VSW  +I GYA+ G  +EA+++F E+++  E+  N AT    LS C+
Sbjct: 347 ARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGES-LNRATFGCALSTCA 405

Query: 222 SISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWS 281
            I+AL  GK +H   + +        VGNA++ MY KCG +  A   F  +  KD +SW+
Sbjct: 406 DIAALELGKQIHGQ-AVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWN 464

Query: 282 TVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 341
           T+++G A +G GRQAL +F  M    V PD++T + ++SACSH GL+D+G   F +M+  
Sbjct: 465 TMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKD 524

Query: 342 YEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDR 401
           Y ++P  +HY C++D+ GRAG LEEA+  IR MP +   + WGALL A RIH N E+ ++
Sbjct: 525 YGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEK 584

Query: 402 IRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
             + +   +  + G + L+SN +A + RW D +K+R ++R +G++K  G SW+EV   I
Sbjct: 585 AAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKI 643



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 136/268 (50%), Gaps = 5/268 (1%)

Query: 28  KALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS 87
           K ++I   + E     +I   N+++  Y  + DI  A + F+ +   D VSW  II+G +
Sbjct: 311 KKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYA 370

Query: 88  KCGFHKEAIDMFCGIDVKP---NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
           + G ++EA++MF  I       N  T    LS C+ + + +LGK IH  +++        
Sbjct: 371 QSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCF 430

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           + NA+L  Y +CGS+      F  + +++VVSW TM+ GYA  GF ++A++VF+ M KT 
Sbjct: 431 VGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESM-KTA 489

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
             +P+E T+V VLSACS    L  G      ++  Y +  ++     +I++  + G +  
Sbjct: 490 GVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEE 549

Query: 265 AIQVF-NMLAYKDKISWSTVISGLAMNG 291
           A  +  NM       SW  ++    ++G
Sbjct: 550 AQDLIRNMPFQPGAASWGALLGASRIHG 577



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 138/310 (44%), Gaps = 42/310 (13%)

Query: 43  HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI 102
            D+F  N +L  YV    +  A ++F+ +   DVVSW +++SG ++ G+  EA ++F   
Sbjct: 109 RDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVF--- 165

Query: 103 DVKPNANTLV------------SVLSACSSLVSHKLGKAIHAHSL-------RNLNENNI 143
           D  P  N++              +  AC    S      I  + L       + L +   
Sbjct: 166 DNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARW 225

Query: 144 ILD----------NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
           + D          N ++  Y + G L+    LF + P R+V +WT M+ GY + G   EA
Sbjct: 226 LFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEA 285

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVI 253
            + F EM      E NE +   +++       +   + +   +  R   ++S+   N +I
Sbjct: 286 KTFFDEM-----PEKNEVSYNAMIAGYVQTKKMDIARELFESMPCR---NISSW--NTMI 335

Query: 254 NMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDV 313
             Y + GD+  A + F+M+  +D +SW+ +I+G A +G   +AL +F  +  +    +  
Sbjct: 336 TGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRA 395

Query: 314 TFIALISACS 323
           TF   +S C+
Sbjct: 396 TFGCALSTCA 405



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 100/416 (24%), Positives = 173/416 (41%), Gaps = 71/416 (17%)

Query: 74  PDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAH 133
           PD++ W   IS   + G    A+ +F   +  P  +++         L + K   A +  
Sbjct: 47  PDILKWNKAISTHMRNGHCDSALHVF---NTMPRRSSVSYNAMISGYLRNSKFNLARNL- 102

Query: 134 SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
               + E ++   N +L  Y+R   L     LF  MP+++VVSW +++ GYA+ G+  EA
Sbjct: 103 -FDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEA 161

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS--------YISTRYDLSVS 245
             VF  M      E N  +   +L+A           YVH+           ++ D  + 
Sbjct: 162 REVFDNM-----PEKNSISWNGLLAA-----------YVHNGRIEEACLLFESKSDWDL- 204

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
            +  N ++  +V+   +G A  +F+ +  +D ISW+T+ISG A  G   QA +LF     
Sbjct: 205 -ISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPT 263

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMS------------------------TV 341
             VF    T+ A++S     G++D+    F  M                          +
Sbjct: 264 RDVF----TWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIAREL 319

Query: 342 YEIVP--QMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN--ACRIHRND- 396
           +E +P   +  +  ++  YG+ G + +A  F   MP + +   W A++   A   H  + 
Sbjct: 320 FESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMP-QRDCVSWAAIIAGYAQSGHYEEA 378

Query: 397 -EMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGC 451
             MF  I+QD    + ++  TF    +T A     E   +I  +  +MG    TGC
Sbjct: 379 LNMFVEIKQD---GESLNRATFGCALSTCADIAALELGKQIHGQAVKMGY--GTGC 429



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 13/185 (7%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S N  TF  AL  C+     +   +IH   ++ G+    F+ N+LL  Y     I  A+ 
Sbjct: 391 SLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEAND 450

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVS 123
            F  +   DVVSW T+++G ++ GF ++A+ +F  +    VKP+  T+V VLSACS    
Sbjct: 451 TFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGL 510

Query: 124 HKLGKAIHAHSLRNLNENNIILDNA-----ILDFYIRCGSLASCGYLFVKMP-KRNVVSW 177
              G         ++ ++  ++  +     ++D   R G L     L   MP +    SW
Sbjct: 511 LDRG----TEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASW 566

Query: 178 TTMIG 182
             ++G
Sbjct: 567 GALLG 571



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/271 (21%), Positives = 116/271 (42%), Gaps = 55/271 (20%)

Query: 112 VSVLSACSSLVSHKLGKAIHAHSLRNLN-----ENNIILDNAILDFYIRCGSLASCGYLF 166
           + V   C+    H       + S+ N N     + +I+  N  +  ++R G   S  ++F
Sbjct: 13  LRVRRVCTINFGHTSTSTRRSESVTNNNKPRVKDPDILKWNKAISTHMRNGHCDSALHVF 72

Query: 167 VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 226
             MP+R+ VS+  MI GY        A ++F +M +                        
Sbjct: 73  NTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPER----------------------- 109

Query: 227 SFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
                         DL       N ++  YV+   +G A ++F+++  KD +SW++++SG
Sbjct: 110 --------------DL----FSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSG 151

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 346
            A NG   +A ++F     N    + +++  L++A  H G +++  +LF++ S  ++++ 
Sbjct: 152 YAQNGYVDEAREVFD----NMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSD-WDLIS 206

Query: 347 QMQHYACVVDMYGRAGLLEEAEAFIREMPIE 377
               + C++  + R   L +A     +MP+ 
Sbjct: 207 ----WNCLMGGFVRKKKLGDARWLFDKMPVR 233


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  267 bits (683), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 154/455 (33%), Positives = 248/455 (54%), Gaps = 11/455 (2%)

Query: 9    NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
            +  +    L  C+     ++  ++H  +++ G    ++  +SL+  YV    I +A  +F
Sbjct: 550  DEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVF 609

Query: 69   NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
            + +    VVS   II+G ++     EAID+F  +    + P+  T  S+L AC+      
Sbjct: 610  SCMPSRSVVSMNAIIAGYAQNDL-VEAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLN 668

Query: 126  LGKAIHAH-SLRNLNENNIILDNAILDFYIRCGSLASCGYLF--VKMPKRNVVSWTTMIG 182
            LG+ IH     R L  +   L  ++L  Y+          LF   + PK  ++ WT +I 
Sbjct: 669  LGRQIHCLIQKRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTIL-WTAIIS 727

Query: 183  GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
            G+ + G  +EA+ ++QEM +   A P++AT  +VL ACS +++L  G+ +HS I     L
Sbjct: 728  GHTQNGCSEEALQLYQEMHRNN-ARPDQATFASVLRACSILASLGDGRMIHSLI-FHVGL 785

Query: 243  SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DKISWSTVISGLAMNGCGRQALQLFS 301
                L G+AV++MY KCGD+  ++QVF  +  K D ISW+++I G A NG    AL++F 
Sbjct: 786  DSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGYAENALKIFD 845

Query: 302  LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
             M    + PDDVTF+ +++ACSH G V +G  +F  M   Y+IVP++ H AC++D+ GR 
Sbjct: 846  EMKHTRIRPDDVTFLGVLTACSHAGRVSEGREIFDIMVHSYKIVPRLDHCACMIDLLGRW 905

Query: 362  GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
            G L+EAE FI ++  E    +W  LL ACRIH +D    R  + L+  +  +   + L+S
Sbjct: 906  GFLKEAEEFIDKLNFEPNAMIWATLLGACRIHGDDIRGRRAAEKLIELEPENSSPYVLLS 965

Query: 422  NTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
            N +A +  W++ N +R  +R  GL+K  GCSWI V
Sbjct: 966  NIYAASGNWDEVNSVRRAMREKGLRKLPGCSWIVV 1000



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 123/427 (28%), Positives = 216/427 (50%), Gaps = 20/427 (4%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M  C    + +T+T  L AC+     +   ++H+ +I++   +++F++N+L+  Y     
Sbjct: 441 MRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGA 500

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           +  A Q F  +   D VSW  II G  +     EA +MF  +    + P+  +L S+LS 
Sbjct: 501 LEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSG 560

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C++L + + G+ +H   +++  +  +   ++++D Y++CG++ +  Y+F  MP R+VVS 
Sbjct: 561 CANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSM 620

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
             +I GYA+     EA+ +FQEM+  +   P+E T  ++L AC+    L+ G+ +H  I 
Sbjct: 621 NAIIAGYAQNDLV-EAIDLFQEMQ-NEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQ 678

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDKISWSTVISGLAMNGCGRQA 296
            R  L   + +G +++ MY+       A  +F+   Y K  I W+ +ISG   NGC  +A
Sbjct: 679 KRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEEA 738

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
           LQL+  M  N   PD  TF +++ ACS    +  G ++   +  V     ++   A VVD
Sbjct: 739 LQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMIHSLIFHVGLDSDELTGSA-VVD 797

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALL----------NACRIHRNDEM-FDRIRQD 405
           MY + G ++ +     EM  + +   W +++          NA +I   DEM   RIR D
Sbjct: 798 MYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGYAENALKIF--DEMKHTRIRPD 855

Query: 406 LVNKKGV 412
            V   GV
Sbjct: 856 DVTFLGV 862



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 121/427 (28%), Positives = 208/427 (48%), Gaps = 49/427 (11%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           + +C  S N +T+   L +C+         ++H  VI+ G   + F + SL+  Y     
Sbjct: 173 LQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGS 232

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           +  A +IF++VV PD VSWT +I+G  + G  +EA+ +F  +    + P+    V+V++A
Sbjct: 233 LVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITA 292

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C  L                                   G L     LFV+MP  NVV+W
Sbjct: 293 CVGL-----------------------------------GRLDDACDLFVQMPNTNVVAW 317

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
             MI G+ +RG   EA+  F+ M KT   +   +TL +VLSA +S+ AL++G  VH+  +
Sbjct: 318 NVMISGHVKRGCDIEAIDFFKNMWKTG-VKSTRSTLGSVLSAIASLEALNYGLLVHAQ-A 375

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            +  L+ +  VG+++INMY KC  +  A +VF+ L  ++ + W+ ++ G A NG   + +
Sbjct: 376 IKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVM 435

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
           +LFS M     +PD+ T+ +++SAC+    ++ G  L  +    +     +     +VDM
Sbjct: 436 KLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQL-HSFIIKHNFEYNLFVENTLVDM 494

Query: 358 YGRAGLLEEAEA---FIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414
           Y + G LEEA     FIR       W+    ++   +    DE F+  R+ +++  G++ 
Sbjct: 495 YAKCGALEEARQQFEFIRNRD-NVSWN--AIIVGYVQEEDEDEAFNMFRRMILD--GIAP 549

Query: 415 GTFALMS 421
              +L S
Sbjct: 550 DEVSLAS 556



 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 188/357 (52%), Gaps = 16/357 (4%)

Query: 27  QKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGL 86
           ++AL++   + + G + D     +++   V +  +  A  +F  +   +VV+W  +ISG 
Sbjct: 265 EEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRLDDACDLFVQMPNTNVVAWNVMISGH 324

Query: 87  SKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNI 143
            K G   EAID F  +    VK   +TL SVLSA +SL +   G  +HA +++    +N+
Sbjct: 325 VKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNV 384

Query: 144 ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
            + +++++ Y +C  + +   +F  + +RN+V W  M+GGYA+ G+  + + +F EM   
Sbjct: 385 YVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGC 444

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
               P+E T  ++LSAC+ +  L  G+ +HS+I  +++   +  V N +++MY KCG + 
Sbjct: 445 G-FWPDEFTYTSILSACACLECLEMGRQLHSFI-IKHNFEYNLFVENTLVDMYAKCGALE 502

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
            A Q F  +  +D +SW+ +I G        +A  +F  MI++ + PD+V+  +++S C+
Sbjct: 503 EARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCA 562

Query: 324 HGGLVDQG-----LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP 375
           +   ++QG      ++   + T       +   + ++DMY + G +E A      MP
Sbjct: 563 NLQALEQGEQVHCFLVKSGLQTC------LYAGSSLIDMYVKCGAIEAARYVFSCMP 613



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 172/403 (42%), Gaps = 64/403 (15%)

Query: 10  HYTFTQALKAC------------------SLAHPHQKALEIHAHVIEYGHLHDIFIQNSL 51
           H  FT  LK C                   LA   + +  IHA  +++G      + +++
Sbjct: 63  HKIFTHLLKICLQQCQRIKIRHPFDETPQRLAQASRTSKTIHAQTLKFGFGSKGRLGSAI 122

Query: 52  LHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKP 106
           +  Y    ++  A + FN +   D+++W +++S  S+ G  ++ I  F     CG  V P
Sbjct: 123 VDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCG--VSP 180

Query: 107 NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLF 166
           N  T   VLS+C+ LV   LGK +H   ++   E N   + +++D Y +CGSL     +F
Sbjct: 181 NQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIF 240

Query: 167 VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 226
             +   + VSWT MI GY + G  +EA+ VF++M+K     P++   V V++AC      
Sbjct: 241 DAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLV-PDQVAFVTVITAC------ 293

Query: 227 SFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
                                         V  G +  A  +F  +   + ++W+ +ISG
Sbjct: 294 ------------------------------VGLGRLDDACDLFVQMPNTNVVAWNVMISG 323

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 346
               GC  +A+  F  M    V     T  +++SA +    ++ GL L  A +    +  
Sbjct: 324 HVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGL-LVHAQAIKQGLNS 382

Query: 347 QMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
            +   + +++MY +   +E A+     +  E    +W A+L  
Sbjct: 383 NVYVGSSLINMYAKCEKMEAAKKVFDALD-ERNLVLWNAMLGG 424


>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Brachypodium distachyon]
          Length = 554

 Score =  267 bits (683), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 153/483 (31%), Positives = 259/483 (53%), Gaps = 45/483 (9%)

Query: 16  ALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD 75
           +L+AC+     +  L +HAH +        ++   ++H       +  A ++F+ V  P+
Sbjct: 19  SLRACA---SFRDLLRVHAHAVRLSLSQSSYLATQIVHLCNAHGRVAHATRVFSQVREPN 75

Query: 76  VVSWTTIISGLSKCGFHKEAIDMFCG-IDVKP---------NANTLVSVLSACSSLVSHK 125
           +     +I   ++   H +AI ++   +  +P         +  T   +L AC  L++  
Sbjct: 76  LHLHNAMIKAYAQNHRHLDAITVYIRMLRRRPFPWISCTGGDRFTYPFLLKACGGLMALD 135

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LGK +H H +R+  E+N I+ N++++ Y R G L     +F  M +R+VVSW T+I  +A
Sbjct: 136 LGKQVHGHVVRSGCESNAIVQNSLIEMYTRAGDLVLARKVFDGMQERDVVSWNTVISAHA 195

Query: 186 ERGFCKEAVSVFQEM-EKT-----------------------------KEAEPNEATLVN 215
             G  ++A +VF  M +KT                             +  EP++ ++V 
Sbjct: 196 RLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAFRLMQMEGFEPDDVSIVA 255

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
           VL AC+ + AL  G+++++Y + R+ +     V NA++ MY KCG +  A+Q+FN +A K
Sbjct: 256 VLPACAQLGALELGRWIYAYCN-RHQMLRETYVCNALVEMYAKCGCIDQALQLFNGMAEK 314

Query: 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLIL 334
           D ISWST++ GLA +G  ++A+QLF+ M     V P+ +TF+ L+SACSH GL+D+GL  
Sbjct: 315 DVISWSTMVGGLAAHGRAQEAVQLFTEMERQGTVKPNGITFVGLLSACSHAGLLDEGLDY 374

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F  M+ VY I P ++HY C+VD+  R+G ++     I +MP+ A+  +WG++LNACR H 
Sbjct: 375 FDRMNDVYGIEPGVEHYGCIVDLLCRSGQIQRTLDLISDMPLPADAKIWGSVLNACRSHG 434

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           + +      + LV  +   VG   +++N +A A RW +    R  IR   ++K  GCS I
Sbjct: 435 DVDTAVLAAERLVALEPEDVGNLVMLANVYAAARRWSEVANTRKAIRSRSMRKTPGCSLI 494

Query: 455 EVN 457
           EV+
Sbjct: 495 EVD 497



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 165/354 (46%), Gaps = 38/354 (10%)

Query: 2   LSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDI 61
           +SC    + +T+   LKAC          ++H HV+  G   +  +QNSL+  Y    D+
Sbjct: 111 ISCTGG-DRFTYPFLLKACGGLMALDLGKQVHGHVVRSGCESNAIVQNSLIEMYTRAGDL 169

Query: 62  FSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---------------- 105
             A ++F+ +   DVVSW T+IS  ++ G  ++A  +F  +  K                
Sbjct: 170 VLARKVFDGMQERDVVSWNTVISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAG 229

Query: 106 ------------------PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
                             P+  ++V+VL AC+ L + +LG+ I+A+  R+       + N
Sbjct: 230 DFSGAVEAFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNRHQMLRETYVCN 289

Query: 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE 207
           A+++ Y +CG +     LF  M +++V+SW+TM+GG A  G  +EAV +F EME+    +
Sbjct: 290 ALVEMYAKCGCIDQALQLFNGMAEKDVISWSTMVGGLAAHGRAQEAVQLFTEMERQGTVK 349

Query: 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267
           PN  T V +LSACS    L  G      ++  Y +         ++++  + G +   + 
Sbjct: 350 PNGITFVGLLSACSHAGLLDEGLDYFDRMNDVYGIEPGVEHYGCIVDLLCRSGQIQRTLD 409

Query: 268 VF-NMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALIS 320
           +  +M    D   W +V++    +G    A+     ++  A+ P+DV  + +++
Sbjct: 410 LISDMPLPADAKIWGSVLNACRSHGDVDTAVLAAERLV--ALEPEDVGNLVMLA 461


>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
 gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
          Length = 590

 Score =  267 bits (683), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 145/458 (31%), Positives = 259/458 (56%), Gaps = 6/458 (1%)

Query: 6   SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAH 65
           +S   + +  A+ AC       +  ++HA +I   +   +F+   L+  YV    +  A 
Sbjct: 6   ASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDAR 65

Query: 66  QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLV 122
            + + +    VVSWTT+ISG S+   H EA+D+F  +      PN  TL +VL++CS   
Sbjct: 66  NVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQ 125

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
           S   GK +H+  ++   E+++ + +++LD Y +  ++     +F  +P+R+VVS T +I 
Sbjct: 126 SIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIIS 185

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
           GYA++G  +EA+ +F+++  ++  + N  T   +++A S +++L +GK VH+ I  R +L
Sbjct: 186 GYAQKGLDEEALDLFRQL-YSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALI-LRKEL 243

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
                + N++I+MY KCG +  + +VF+ +  +  +SW+ ++ G   +G G + + LF  
Sbjct: 244 PFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFK- 302

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
            +   V PD VT +A++S CSHGGLVD+GL +F  +      +    HY C++D+ GR+G
Sbjct: 303 DLHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSG 362

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSN 422
            LE+A   I  MP E+  S+WG+LL ACR+H N  + + + Q L+  +  + G + ++SN
Sbjct: 363 RLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSN 422

Query: 423 TFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            +A A  W+D  K+R  +    + K+ G SWI ++  I
Sbjct: 423 IYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVI 460


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  267 bits (683), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 147/458 (32%), Positives = 254/458 (55%), Gaps = 8/458 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N YT     KA           E+     E G   ++ +  +L+  Y     +  A  +F
Sbjct: 321 NMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVF 380

Query: 69  NSVVFPDVVS--WTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVS 123
           ++      V+  W  +ISG S+ G  +EA++++   C   +  +  T  SV +A ++  S
Sbjct: 381 DTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKS 440

Query: 124 HKLGKAIHAHSLR-NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
            + G+ +H   L+  L+   + ++NAI D Y +CG L     +F +M +R++VSWTT++ 
Sbjct: 441 LQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVT 500

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
            Y++    +EA++ F  M +   A PN+ T  +VL +C+S+  L +G+ VH  +  +  L
Sbjct: 501 AYSQSSLGEEALATFCLMREEGFA-PNQFTFSSVLISCASLCFLEYGRQVHGLL-CKAGL 558

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
                + +A+I+MY KCG +  A +VF+ ++  D +SW+ +ISG A +G    ALQLF  
Sbjct: 559 DTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRR 618

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
           M ++ +  + VT + ++ ACSHGG+V++GL  F+ M   Y +VP+M+HYAC++D+ GR G
Sbjct: 619 MELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVG 678

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSN 422
            L++A  FIR+MP+E    VW  LL  CR+H N E+ +   + +++ +     T+ L+SN
Sbjct: 679 RLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIRPEYSATYVLLSN 738

Query: 423 TFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           T+     +ED   +R+ ++  G+KK+ G SWI V   +
Sbjct: 739 TYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVKGRV 776



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 179/386 (46%), Gaps = 22/386 (5%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHD---IFIQNSLLHFYVTVKDIFSAHQIFNSVVF 73
           L+ C+     ++A  +H  V++  +  D   + + N   H Y    +  +A  +F+ +  
Sbjct: 125 LRDCAEKGSIREAKAVHGLVLK-SNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQ 183

Query: 74  PDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAI 130
            +V SWT +I G ++ G   +    FC +    + P+     +++ +C  L S +LGK +
Sbjct: 184 RNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMV 243

Query: 131 HAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFC 190
           HA  +      +I +  ++L+ Y + GS+    ++F  M + N VSW  MI G    G  
Sbjct: 244 HAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLH 303

Query: 191 KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGN 250
            EA  +F  M K     PN  TLV+V  A   +  ++ GK V +  ++   +  + LVG 
Sbjct: 304 LEAFDLFVRM-KNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQN-CASELGIEGNVLVGT 361

Query: 251 AVINMYVKCGDVGIAIQVF--NMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
           A+I+MY KCG +  A  VF  N +       W+ +ISG + +GC ++AL+L+  M  N +
Sbjct: 362 ALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGI 421

Query: 309 FPDDVTFIALISACSHG-----GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363
             D  T+ ++ +A +       G V  G++L   +  +   V        + D Y + G 
Sbjct: 422 TSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNN-----AIADAYSKCGF 476

Query: 364 LEEAEAFIREMPIEAEWSVWGALLNA 389
           LE+       M  E +   W  L+ A
Sbjct: 477 LEDVRKVFDRME-ERDIVSWTTLVTA 501


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  267 bits (683), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 150/466 (32%), Positives = 263/466 (56%), Gaps = 15/466 (3%)

Query: 3   SCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIF 62
           +CP   N Y FT AL ACS     ++ ++ H  + ++G +   +++++L+H Y     + 
Sbjct: 113 ACP---NEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVE 169

Query: 63  SAHQIFNSVV---FPDVVSWTTIISGLSKCGFHKEAIDMFCG-ID--VKPNANTLVSVLS 116
            A Q+ ++V      D+ S+ ++++ L + G  +EA+++    +D  V  +  T V V+ 
Sbjct: 170 LALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMG 229

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
            C+ +   +LG  +HA  LR     +  + + ++D Y +CG + +   +F  +  RNVV 
Sbjct: 230 LCAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVV 289

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           WT ++  Y + G+ +E++++F  M++ +   PNE T   +L+AC+ I+AL  G  +H+ +
Sbjct: 290 WTALMTAYLQNGYFEESLNLFTCMDR-EGTLPNEYTFAVLLNACAGIAALRHGDLLHARV 348

Query: 237 STRYDLSVSN--LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
                L   N  +V NA+INMY K G +  +  VF  + Y+D I+W+ +I G + +G G+
Sbjct: 349 EK---LGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGK 405

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
           QALQ+F  M+     P+ VTFI ++SA SH GLV +G      +   ++I P ++HY C+
Sbjct: 406 QALQVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEHYTCM 465

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414
           V +  RAGLL+EAE F++   ++ +   W  LLNAC +HRN ++  RI + ++      V
Sbjct: 466 VALLSRAGLLDEAENFMKTTQVKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQMDPHDV 525

Query: 415 GTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           GT+ L+SN +A A RW+    IR  +R   +KK+ G SW+++   I
Sbjct: 526 GTYTLLSNMYAKARRWDGVVTIRKLMRERNIKKEPGASWLDIRNDI 571



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 173/373 (46%), Gaps = 19/373 (5%)

Query: 49  NSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DV 104
           NSL+H YV    +  A  +F+++   +VVSW  +++G    G H E + +F  +    + 
Sbjct: 54  NSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNA 113

Query: 105 KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGY 164
            PN     + LSACS     K G   H    +     +  + +A++  Y RC  +     
Sbjct: 114 CPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQ 173

Query: 165 LFVKMPKRNV---VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221
           +   +P  +V    S+ +++    E G  +EAV V + M     A  +  T V V+  C+
Sbjct: 174 VLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAW-DHVTYVGVMGLCA 232

Query: 222 SISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWS 281
            I  L  G  VH+ +  R  L     VG+ +I+MY KCG+V  A  VF+ L  ++ + W+
Sbjct: 233 QIRDLQLGLRVHARL-LRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWT 291

Query: 282 TVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 341
            +++    NG   ++L LF+ M      P++ TF  L++AC+    +  G +L   +  +
Sbjct: 292 ALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEKL 351

Query: 342 ----YEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
               + IV        +++MY ++G ++ +     +M I  +   W A++     H   +
Sbjct: 352 GFKNHVIVRN-----ALINMYSKSGSIDSSYNVFTDM-IYRDIITWNAMICGYSHHGLGK 405

Query: 398 MFDRIRQDLVNKK 410
              ++ QD+V+ +
Sbjct: 406 QALQVFQDMVSAE 418



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 165/355 (46%), Gaps = 24/355 (6%)

Query: 106 PNANTLVSVLSACSSLVSHKLGKAIHAHSL-RNL--NENNIILDNAILDFYIRCGSLASC 162
           P+   L  +L  C+ +     GKA+HA  L RN   N ++I   N+++  Y++CG L   
Sbjct: 10  PSLEELGKLLKLCADVKWLPFGKAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLA 69

Query: 163 GYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS 222
             LF  MP RNVVSW  ++ GY   G   E + +F+ M   + A PNE      LSACS 
Sbjct: 70  RNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSH 129

Query: 223 ISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA---YKDKIS 279
              +  G   H  +  ++ L     V +A+++MY +C  V +A+QV + +      D  S
Sbjct: 130 GGRVKEGMQCHGLL-FKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFS 188

Query: 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL----ILF 335
           +++V++ L  +G G +A+++   M+   V  D VT++ ++  C+    +  GL     L 
Sbjct: 189 YNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLL 248

Query: 336 KAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN 395
           +      E V  M     ++DMYG+ G +  A      +       VW AL+ A   +  
Sbjct: 249 RGGLMFDEFVGSM-----LIDMYGKCGEVLNARNVFDGLQ-NRNVVVWTALMTA---YLQ 299

Query: 396 DEMFDRIRQ--DLVNKKGVSVG--TFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446
           +  F+        ++++G      TFA++ N  AG       + +   + ++G K
Sbjct: 300 NGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEKLGFK 354


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  267 bits (683), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 147/420 (35%), Positives = 238/420 (56%), Gaps = 25/420 (5%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISG-LSKCGFHKEAIDMFCGI 102
           ++ +  +L+  Y     + SA ++F+ +    VVSWT +I+G +  C   + A +    +
Sbjct: 225 EVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRML 284

Query: 103 DVK--PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLA 160
           + K  PN  TL+S+++ C  + +  LGK  HA+ LRN    ++ L  A++D Y +CG + 
Sbjct: 285 EEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVG 344

Query: 161 SCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
               LF  + K++V  W+ +I  YA      +  ++F EM    + +PN  T+V++LS C
Sbjct: 345 YARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEM-LNNDVKPNNVTMVSLLSLC 403

Query: 221 SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
           +   AL  GK+ H+YI+ R+ L V  ++  A+INMY KCGDV IA  +FN    +D   W
Sbjct: 404 AEAGALDLGKWTHAYIN-RHGLEVDVILETALINMYAKCGDVTIARSLFNEAMQRDIRMW 462

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340
           +T+++G +M+GCG++AL+LFS M  + V P+D+TF+++  ACSH GL             
Sbjct: 463 NTMMAGFSMHGCGKEALELFSEMESHGVEPNDITFVSIFHACSHSGL------------- 509

Query: 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFD 400
                  M+HY C+VD+ GRAG L+EA   I  MP+     +WGALL AC++H+N  + +
Sbjct: 510 -------MEHYGCLVDLLGRAGHLDEAHNIIENMPMRPNTIIWGALLAACKLHKNLALGE 562

Query: 401 RIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
              + ++     + G   L SN +A A RW D   +R+ +   G+KK+ G SWIEV+ S+
Sbjct: 563 VAARKILELDPQNCGYSVLKSNIYASAKRWNDVTSVREAMSHSGMKKEPGLSWIEVSGSV 622



 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 118/395 (29%), Positives = 202/395 (51%), Gaps = 13/395 (3%)

Query: 6   SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAH 65
           ++ +++     LKAC+ A       E+H    + G   D+F+ N+L++ Y     + SA 
Sbjct: 84  AALDNFILPSLLKACAQASSGDLGRELHGFAQKNGFASDVFVCNALMNMYEKCGCLVSAR 143

Query: 66  QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDM-----FCGIDVKPNANTLVSVLSACSS 120
            +F+ +   DVVSWTT++    +     EA+ +     F G  VK +   L+S+++   +
Sbjct: 144 LVFDQMPERDVVSWTTMLGCYVRSKAFGEALRLVREMQFVG--VKLSGVALISLIAVFGN 201

Query: 121 LVSHKLGKAIHAHSLRNLNENN--IILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWT 178
           L+  K G+A+H + +RN+ +    + +  A++D Y + G LAS   LF ++ KR+VVSWT
Sbjct: 202 LLDMKSGRAVHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWT 261

Query: 179 TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST 238
            MI G        E    F  M + K   PNE TL+++++ C  +  L  GK+ H+Y+  
Sbjct: 262 VMIAGCIRSCRLDEGAKNFNRMLEEK-LFPNEITLLSLITECGFVGTLDLGKWFHAYL-L 319

Query: 239 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQ 298
           R    +S  +  A+I+MY KCG VG A  +FN +  KD   WS +IS  A   C  Q   
Sbjct: 320 RNGFGMSLALVTALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFN 379

Query: 299 LFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMY 358
           LF  M+ N V P++VT ++L+S C+  G +D G      ++     V  +   A +++MY
Sbjct: 380 LFVEMLNNDVKPNNVTMVSLLSLCAEAGALDLGKWTHAYINRHGLEVDVILETA-LINMY 438

Query: 359 GRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
            + G +  A +   E  ++ +  +W  ++    +H
Sbjct: 439 AKCGDVTIARSLFNE-AMQRDIRMWNTMMAGFSMH 472



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 173/357 (48%), Gaps = 12/357 (3%)

Query: 40  GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF 99
           GH H    Q   LH +       + H  F+   F    ++  +IS  S    H       
Sbjct: 16  GHSHLNLQQTHQLHAHFIKTQFHNPHPFFSQSHFTPEANYNLLIS--SYTNNHLPQASFN 73

Query: 100 CGIDVKPNANT------LVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFY 153
           C + ++ N         L S+L AC+   S  LG+ +H  + +N   +++ + NA+++ Y
Sbjct: 74  CYLHMRSNDAAALDNFILPSLLKACAQASSGDLGRELHGFAQKNGFASDVFVCNALMNMY 133

Query: 154 IRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATL 213
            +CG L S   +F +MP+R+VVSWTTM+G Y       EA+ + +EM+     + +   L
Sbjct: 134 EKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRSKAFGEALRLVREMQFVG-VKLSGVAL 192

Query: 214 VNVLSACSSISALSFGKYVHSYISTRY-DLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 272
           +++++   ++  +  G+ VH YI     D  +   +  A+I+MY K G +  A ++F+ L
Sbjct: 193 ISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRL 252

Query: 273 AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL 332
           + +  +SW+ +I+G   +    +  + F+ M+   +FP+++T ++LI+ C   G +D G 
Sbjct: 253 SKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGTLDLG- 311

Query: 333 ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
             F A          +     ++DMYG+ G +  A A    +  + +  +W  L++A
Sbjct: 312 KWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVK-KKDVKIWSVLISA 367



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 11/161 (6%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML+     N+ T    L  C+ A         HA++  +G   D+ ++ +L++ Y    D
Sbjct: 384 MLNNDVKPNNVTMVSLLSLCAEAGALDLGKWTHAYINRHGLEVDVILETALINMYAKCGD 443

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           +  A  +FN  +  D+  W T+++G S  G  KEA+++F  ++   V+PN  T VS+  A
Sbjct: 444 VTIARSLFNEAMQRDIRMWNTMMAGFSMHGCGKEALELFSEMESHGVEPNDITFVSIFHA 503

Query: 118 C--SSLVSHK------LGKAIHAHSLRNLNENNIILDNAIL 150
           C  S L+ H       LG+A H     N+ EN  +  N I+
Sbjct: 504 CSHSGLMEHYGCLVDLLGRAGHLDEAHNIIENMPMRPNTII 544


>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Vitis vinifera]
          Length = 847

 Score =  267 bits (683), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 142/431 (32%), Positives = 247/431 (57%), Gaps = 5/431 (1%)

Query: 28  KALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS 87
           KA+E    +  +G   D     ++L   +   DI +  Q+F+ +  P + SW TI+SG S
Sbjct: 336 KAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSSPSLSSWNTILSGYS 395

Query: 88  KCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
           +   HKEA+ +F  +    V P+  TL  +LS+ + ++  + G+ +HA S + +   +I 
Sbjct: 396 QNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIY 455

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           L + ++  Y +CG +     +F ++ + ++V W +M+ G +     KEA + F++M + K
Sbjct: 456 LASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKM-REK 514

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
              P++ +   VLS C+ +S+LS G+ VHS I+ R        VG+A+I+MY KCGDV  
Sbjct: 515 GMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIA-REGYMNDAFVGSALIDMYSKCGDVDA 573

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
           A  VF+M+  K+ ++W+ +I G A NGCG +A+ L+  MI +   PD +TF+A+++ACSH
Sbjct: 574 ARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSH 633

Query: 325 GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 384
            GLVD G+ +F +M   + + P + HY C++D  GRAG L EAE  I +MP + +  +W 
Sbjct: 634 SGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWE 693

Query: 385 ALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444
            LL++CR++ +  +  R  ++L +    +   + L++N ++   RW+D   +R+ +    
Sbjct: 694 VLLSSCRVYADVSLARRAAEELFHLDPQNSAPYVLLANIYSSLGRWDDAKAVRELMSYNQ 753

Query: 445 LKKKTGCSWIE 455
           + K  G SWIE
Sbjct: 754 VVKDPGYSWIE 764



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 175/353 (49%), Gaps = 24/353 (6%)

Query: 43  HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI 102
            DI+  N++L  Y    ++  AH +F  +   ++VSW T+IS L++ GF ++A+ ++  +
Sbjct: 69  RDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYRM 128

Query: 103 DVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSL 159
             +   P   TL SVLSAC +LV  + G+  H  S++   +NNI + NA+L  Y +C  +
Sbjct: 129 SREGFVPTHFTLASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCI 188

Query: 160 ASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
                 F  +P+ N VS+T M+GG A+     EA  +F+ M + +    +  +L +VL  
Sbjct: 189 GDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNR-IHVDSVSLSSVLGV 247

Query: 220 CSS--------------ISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
           CS               +S+   G+ VH  ++ ++       + N++++MY K G++  A
Sbjct: 248 CSRGGCGEFGLHDSNDVLSSDVHGQQVHC-LTIKHGFESDLHLNNSLLDMYAKNGNMDSA 306

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
             +F  +     +SW+ +I+G        +A++    M  +   PD++T++ ++ AC   
Sbjct: 307 EMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKS 366

Query: 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEA 378
           G ++ G  +F  MS+     P +  +  ++  Y +    +EA    REM   +
Sbjct: 367 GDIEAGRQMFDGMSS-----PSLSSWNTILSGYSQNENHKEAVKLFREMQFRS 414



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 145/309 (46%), Gaps = 46/309 (14%)

Query: 111 LVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGS------------ 158
           L S+L  C    +H  GK IHAH LR+   ++  L N +++FY +C +            
Sbjct: 8   LASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMP 67

Query: 159 -------------------LASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQE 199
                              L     LF +MP+RN+VSW T+I      GF ++A+ V+  
Sbjct: 68  KRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYR 127

Query: 200 MEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKC 259
           M +     P   TL +VLSAC ++  +  G+  H  IS +  L  +  VGNA++ MY KC
Sbjct: 128 MSREGFV-PTHFTLASVLSACGALVDVECGRRCHG-ISIKIGLDNNIYVGNALLGMYAKC 185

Query: 260 GDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALI 319
             +G AIQ F  +   +++S++ ++ GLA +    +A +LF LM+ N +  D V+  +++
Sbjct: 186 RCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVL 245

Query: 320 SACSHGGLVDQGL-----IL--------FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
             CS GG  + GL     +L           ++  +     +     ++DMY + G ++ 
Sbjct: 246 GVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDS 305

Query: 367 AEAFIREMP 375
           AE     MP
Sbjct: 306 AEMIFVNMP 314



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 103/416 (24%), Positives = 189/416 (45%), Gaps = 60/416 (14%)

Query: 10  HYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN 69
           H+T    L AC      +     H   I+ G  ++I++ N+LL  Y   + I  A Q F 
Sbjct: 137 HFTLASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFG 196

Query: 70  SVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS------ 120
            V  P+ VS+T ++ GL+      EA  +F  +    +  ++ +L SVL  CS       
Sbjct: 197 DVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEF 256

Query: 121 --------LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKR 172
                   L S   G+ +H  ++++  E+++ L+N++LD Y + G++ S   +FV MP+ 
Sbjct: 257 GLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEV 316

Query: 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYV 232
           +VVSW  MI GY ++    +A+   Q M+     EP+E T VN+L AC            
Sbjct: 317 SVVSWNVMIAGYGQKSQSSKAIEYLQRMQ-YHGFEPDEITYVNMLVAC------------ 363

Query: 233 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292
                                   +K GD+    Q+F+ ++     SW+T++SG + N  
Sbjct: 364 ------------------------IKSGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNEN 399

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
            ++A++LF  M   +V PD  T   ++S+ + G ++ +G     A+S        +   +
Sbjct: 400 HKEAVKLFREMQFRSVHPDRTTLAIILSSLA-GMMLLEGGRQVHAVSQKAVFRTDIYLAS 458

Query: 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDRIRQ 404
            ++ MY + G +E A+     +  E +   W +++    ++  D+     F ++R+
Sbjct: 459 GLIGMYSKCGKVEMAKRIFDRIA-ELDIVCWNSMMAGLSLNSLDKEAFTFFKKMRE 513



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 97/207 (46%), Gaps = 10/207 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +++   L  C+      +  ++H+ +   G+++D F+ ++L+  Y    D+ +A  +F
Sbjct: 519 SQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVF 578

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHK 125
           + ++  + V+W  +I G ++ G   EA+ ++    G   KP+  T V+VL+ACS      
Sbjct: 579 DMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVD 638

Query: 126 LGKAIHAHSLRNLNENNIILDN--AILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIG 182
            G  I  +S++  +    ++D+   I+D   R G L     L  KMP K + + W  ++ 
Sbjct: 639 TGIKIF-NSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLLS 697

Query: 183 G---YAERGFCKEAVSVFQEMEKTKEA 206
               YA+    + A      ++    A
Sbjct: 698 SCRVYADVSLARRAAEELFHLDPQNSA 724


>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
          Length = 526

 Score =  267 bits (683), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 150/447 (33%), Positives = 236/447 (52%), Gaps = 37/447 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +TF   LKAC+     +    +H  V   G   + F++N+L++F+    D+  A  +F
Sbjct: 77  DKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALF 136

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
           +     DVV+W+ + +G ++ G    A  +F  + VK               LVS     
Sbjct: 137 DGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVK--------------DLVSW---- 178

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
                             N ++  Y + G + S   LF ++PKR+VV+W  MI GY   G
Sbjct: 179 ------------------NVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCG 220

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
             ++A+ +F+EM    E  P+E T++++LSAC+ +  L  G+ +H  IS      +S L+
Sbjct: 221 SNQQALEMFEEMRSVGEL-PDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLL 279

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
           GNA+I+MY KCG +  A++VF  +  KD  +W++V+ GLA +G   +++ LF+ M    +
Sbjct: 280 GNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKI 339

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            PD++TF+ ++ ACSH G V++G   F  M   Y I P ++HY C+VD+ GRAGLL EA 
Sbjct: 340 RPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAF 399

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
            FI  M IE    VW  LL ACRIH N E+  R    L+  +    G + L+SN +A   
Sbjct: 400 DFIDTMKIEPNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYASRG 459

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIE 455
            W+   K+R  +   G++K+ GCS IE
Sbjct: 460 EWDGVEKVRKLMDDSGVRKEAGCSLIE 486



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 158/349 (45%), Gaps = 51/349 (14%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSS 120
           AHQ+F  +  PD   W T+I G ++      AI ++  ++   V+P+  T   VL AC+ 
Sbjct: 31  AHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTR 90

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           L   K+G  +H    R   E+N  + N ++ F+  CG LA    LF    KR+VV+W+ +
Sbjct: 91  LCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSAL 150

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
             GYA RG    A  +F EM                                        
Sbjct: 151 TAGYARRGELGVARQLFDEM---------------------------------------- 170

Query: 241 DLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
              V +LV  N +I  Y K G++  A ++F+ +  +D ++W+ +I+G  + G  +QAL++
Sbjct: 171 --PVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEM 228

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
           F  M      PD+VT ++L+SAC+  G +D G  +   +S +      +     ++DMY 
Sbjct: 229 FEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYA 288

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDRIRQ 404
           + G +  A    + M  E + S W ++L     H + E    +F  +R+
Sbjct: 289 KCGSIVRALEVFQGMR-EKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRK 336



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 6/179 (3%)

Query: 157 GSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNV 216
           G++A    LF  + + +   W TMI G A+      A+S++ +ME      P++ T   V
Sbjct: 26  GTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGC-VRPDKFTFPFV 84

Query: 217 LSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD 276
           L AC+ +  +  G  VH  +  R     +  V N +I  +  CGD+ +A  +F+  A +D
Sbjct: 85  LKACTRLCWVKMGFGVHGRV-FRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRD 143

Query: 277 KISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILF 335
            ++WS + +G A  G    A QLF  M +     D V++  +I+  +  G ++    LF
Sbjct: 144 VVAWSALTAGYARRGELGVARQLFDEMPVK----DLVSWNVMITGYAKRGEMESARKLF 198


>gi|15225365|ref|NP_182015.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546766|sp|Q1PEU4.2|PP201_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g44880
 gi|2344896|gb|AAC31836.1| hypothetical protein [Arabidopsis thaliana]
 gi|330255385|gb|AEC10479.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 555

 Score =  267 bits (683), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 148/450 (32%), Positives = 246/450 (54%), Gaps = 9/450 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +++TFT   K+CSL+    + L++H+ +  +G   D+++   ++  Y     +  A   F
Sbjct: 77  DNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAF 136

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
           + +     VSWT +ISG  +CG    A  +F   D  P+   +V   +     V  K G 
Sbjct: 137 DEMPHRSEVSWTALISGYIRCGELDLASKLF---DQMPHVKDVVIYNAMMDGFV--KSGD 191

Query: 129 AIHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
              A  L   +    +I    ++  Y     + +   LF  MP+RN+VSW TMIGGY + 
Sbjct: 192 MTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQN 251

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
              +E + +FQEM+ T   +P++ T+++VL A S   ALS G++ H ++  R  L     
Sbjct: 252 KQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQ-RKKLDKKVK 310

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V  A+++MY KCG++  A ++F+ +  K   SW+ +I G A+NG  R AL LF  M+I  
Sbjct: 311 VCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEE 370

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
             PD++T +A+I+AC+HGGLV++G   F  M  +  +  +++HY C+VD+ GRAG L+EA
Sbjct: 371 K-PDEITMLAVITACNHGGLVEEGRKWFHVMREM-GLNAKIEHYGCMVDLLGRAGSLKEA 428

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
           E  I  MP E    +  + L+AC  +++ E  +RI +  V  +  + G + L+ N +A  
Sbjct: 429 EDLITNMPFEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAAD 488

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
            RW+D   +++ +R+   KK+ GCS IE+N
Sbjct: 489 KRWDDFGMVKNVMRKNQAKKEVGCSLIEIN 518



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 11/209 (5%)

Query: 135 LRNLNENNIILDNAILDFYIRCGSLASCGY---LFVKMPKRNVVSWT-TMIGGYAERGFC 190
           LR+  E N+ +      F +   S    GY   LF + P+R+    + +MI  Y E    
Sbjct: 2   LRHAIETNVQI---FTKFLVISASAVGIGYARKLFDQRPQRDDSFLSNSMIKAYLETRQY 58

Query: 191 KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGN 250
            ++ ++++++ K     P+  T   +  +CS    +  G  +HS I  R+       V  
Sbjct: 59  PDSFALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQI-WRFGFCADMYVST 117

Query: 251 AVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP 310
            V++MY K G +G A   F+ + ++ ++SW+ +ISG    G    A +LF  M       
Sbjct: 118 GVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQM---PHVK 174

Query: 311 DDVTFIALISACSHGGLVDQGLILFKAMS 339
           D V + A++      G +     LF  M+
Sbjct: 175 DVVIYNAMMDGFVKSGDMTSARRLFDEMT 203


>gi|449521571|ref|XP_004167803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 817

 Score =  267 bits (683), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 153/453 (33%), Positives = 258/453 (56%), Gaps = 11/453 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T   A+ A S     + A ++HA VI+   +  + + N+L+  Y     I ++ +IF+++
Sbjct: 316 TLLSAISAASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNM 375

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGK 128
              DVVSW T+IS   + G + EA+ +F  +   D+  ++ T+ ++LSA S L +  +GK
Sbjct: 376 PEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGK 435

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKM--PKRNVVSWTTMIGGYAE 186
             H + LRN  +    +D+ ++D Y + G + +   +F K    +R+  +W +M+ GY +
Sbjct: 436 QTHGYLLRNGIQFEG-MDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQ 494

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
            G   +A  + ++M   K   PN  TL ++L AC+    + +GK +H + S R DL  + 
Sbjct: 495 NGLVDQAFLILRQMLDQK-VMPNVVTLASILPACNPSGYIDWGKQLHGF-SIRNDLDQNV 552

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            V  A+I+MY K G +  A  VF+    K  +++ST+I G   +G G  AL +F  M  +
Sbjct: 553 FVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGESALFMFHRMQKS 612

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
            + PD VT +A++SACS+ GLVD+GL +F++M TVY I P  +H+ CV DM GRAG +++
Sbjct: 613 GIQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPSTEHFCCVADMLGRAGRVDK 672

Query: 367 AEAFIREMPIEAE-WSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVS--VGTFALMSNT 423
           A  F+  +  +     +WG+LL ACRIH+  E+   + + L+  + ++   G   L+SN 
Sbjct: 673 AYEFVIGLGEKGNVMEIWGSLLAACRIHKQFELGKLVAKKLLEMEKINGKTGYHVLLSNI 732

Query: 424 FAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           +A    WE+ + +R ++R  GLKK+TG SWIE+
Sbjct: 733 YAEERNWENVDIVRKQMRERGLKKETGSSWIEI 765



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 117/442 (26%), Positives = 212/442 (47%), Gaps = 47/442 (10%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYV----TVKD--IF 62
           + YT++  LKAC+          +HAH +         + NSLL+ Y     T  D  + 
Sbjct: 95  DSYTYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMV 154

Query: 63  SAH-------QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLV 112
           S +       ++F+++    VV+W T+I+   +   + EA+  F     I +KP+  + V
Sbjct: 155 SGYSRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFV 214

Query: 113 SVLSACSSLVSHKLGKAIHAHSLRNLNE--NNIILDNAILDFYIRCGSLASCGYLFVKMP 170
           +V  A SSL   K    +H   ++  +E  N++ + ++ +  Y   G L     +F    
Sbjct: 215 NVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCL 274

Query: 171 KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGK 230
           +RN   W TMI  + +  F  E + +F +  ++++A  +E TL++ +SA S +      +
Sbjct: 275 ERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAE 334

Query: 231 YVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAM 289
            +H+++    +++V+ + V NA+I MY +C  +  + ++F+ +  KD +SW+T+IS    
Sbjct: 335 QLHAFVIK--NVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQ 392

Query: 290 NGCGRQALQLFSLMIINAVFPDDVTFIALISACS-----------HGGLVDQGLILFKAM 338
           NG   +AL LF  M    +  D VT  AL+SA S           HG L+  G I F+ M
Sbjct: 393 NGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNG-IQFEGM 451

Query: 339 STVYEIVPQMQHYACVVDMYGRAGLLEEAE-AFIREMPIEAEWSVWGALLNA-CRIHRND 396
            +             ++DMY ++GL+E A+  F +    E + + W ++++   +    D
Sbjct: 452 DSY------------LIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVD 499

Query: 397 EMFDRIRQDLVNKKGVSVGTFA 418
           + F  +RQ L  K   +V T A
Sbjct: 500 QAFLILRQMLDQKVMPNVVTLA 521



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 107/375 (28%), Positives = 170/375 (45%), Gaps = 40/375 (10%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI-----DVKPNANTLVSVLSAC 118
           A Q+F+++  P  V W TII GL    F  EA+  +  +      VK ++ T  SVL AC
Sbjct: 47  ARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSVLKAC 106

Query: 119 SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYL------------- 165
           +   +  +GKA+HAH LR L   + I+ N++L+ Y  C S    G +             
Sbjct: 107 ADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRKV 166

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
           F  M KR VV+W T+I  Y       EAV  F  M K    +P+  + VNV  A SS+  
Sbjct: 167 FDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIG-IKPSPVSFVNVFPAFSSLGD 225

Query: 226 LSFGKYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVI 284
                 VH  +       V++L V ++ I MY + G +  A +VF+    ++   W+T+I
Sbjct: 226 FKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMI 285

Query: 285 SGLAMNGCGRQALQLFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 343
           S    N    + +QLF   + +     D+VT ++ ISA SH       L  F+    ++ 
Sbjct: 286 SAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASH-------LQKFELAEQLHA 338

Query: 344 I------VPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRND 396
                  V Q+     ++ MY R   ++ +      MP E +   W  +++A  +   ND
Sbjct: 339 FVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMP-EKDVVSWNTMISAFVQNGLND 397

Query: 397 E----MFDRIRQDLV 407
           E     ++  +QDL+
Sbjct: 398 EALMLFYEMKKQDLM 412



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 113/248 (45%), Gaps = 17/248 (6%)

Query: 157 GSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME-KTKEAEPNEATLVN 215
           G L     LF  +P+ + V W T+I G     F  EA+  +  M+  + + + +  T  +
Sbjct: 42  GQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSS 101

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV------------- 262
           VL AC+    L  GK VH++   R  ++ S +V N+++NMY  C                
Sbjct: 102 VLKACADTRNLVVGKAVHAHF-LRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRC 160

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
            +  +VF+ +  +  ++W+T+I+         +A++ FS+M+   + P  V+F+ +  A 
Sbjct: 161 DLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAF 220

Query: 323 SHGGLVDQGLILFKAMSTV-YEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 381
           S  G      ++   +  +  E V  +   +  + MY   G LE A+  + +  +E    
Sbjct: 221 SSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKK-VFDNCLERNTE 279

Query: 382 VWGALLNA 389
           VW  +++A
Sbjct: 280 VWNTMISA 287


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  267 bits (683), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 147/419 (35%), Positives = 232/419 (55%), Gaps = 7/419 (1%)

Query: 42  LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG 101
           + D    N+++  Y     +  A ++F+     DV +WT ++SG  + G   EA   F  
Sbjct: 232 VRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFF-- 289

Query: 102 IDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLAS 161
            D  P  N  VS  +  +  V  K    I      ++   NI   N ++  Y + G +A 
Sbjct: 290 -DEMPEKNE-VSYNAMIAGYVQTK-KMDIARELFESMPCRNISSWNTMITGYGQIGDIAQ 346

Query: 162 CGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221
               F  MP+R+ VSW  +I GYA+ G  +EA+++F E+++  E+  N AT    LS C+
Sbjct: 347 ARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGES-LNRATFGCALSTCA 405

Query: 222 SISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWS 281
            I+AL  GK +H   + +        VGNA++ MY KCG +  A   F  +  KD +SW+
Sbjct: 406 DIAALELGKQIHGQ-AVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWN 464

Query: 282 TVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 341
           T+++G A +G GRQAL +F  M    V PD++T + ++SACSH GL+D+G   F +M+  
Sbjct: 465 TMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKD 524

Query: 342 YEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDR 401
           Y ++P  +HY C++D+ GRAG LEEA+  IR MP +   + WGALL A RIH N E+ ++
Sbjct: 525 YGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEK 584

Query: 402 IRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
             + +   +  + G + L+SN +A + RW D +K+R ++R +G++K  G SW+EV   I
Sbjct: 585 AAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKI 643



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 136/268 (50%), Gaps = 5/268 (1%)

Query: 28  KALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS 87
           K ++I   + E     +I   N+++  Y  + DI  A + F+ +   D VSW  II+G +
Sbjct: 311 KKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYA 370

Query: 88  KCGFHKEAIDMFCGIDVKP---NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
           + G ++EA++MF  I       N  T    LS C+ + + +LGK IH  +++        
Sbjct: 371 QSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCF 430

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           + NA+L  Y +CGS+      F  + +++VVSW TM+ GYA  GF ++A++VF+ M KT 
Sbjct: 431 VGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESM-KTA 489

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
             +P+E T+V VLSACS    L  G      ++  Y +  ++     +I++  + G +  
Sbjct: 490 GVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEE 549

Query: 265 AIQVF-NMLAYKDKISWSTVISGLAMNG 291
           A  +  NM       SW  ++    ++G
Sbjct: 550 AQDLIRNMPFQPGAASWGALLGASRIHG 577



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 138/310 (44%), Gaps = 42/310 (13%)

Query: 43  HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI 102
            D+F  N +L  YV    +  A ++F+ +   DVVSW +++SG ++ G+  EA ++F   
Sbjct: 109 RDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVF--- 165

Query: 103 DVKPNANTLV------------SVLSACSSLVSHKLGKAIHAHSL-------RNLNENNI 143
           D  P  N++              +  AC    S      I  + L       + L +   
Sbjct: 166 DNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARW 225

Query: 144 ILD----------NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
           + D          N ++  Y + G L+    LF + P R+V +WT M+ GY + G   EA
Sbjct: 226 LFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEA 285

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVI 253
            + F EM      E NE +   +++       +   + +   +  R   ++S+   N +I
Sbjct: 286 KTFFDEM-----PEKNEVSYNAMIAGYVQTKKMDIARELFESMPCR---NISSW--NTMI 335

Query: 254 NMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDV 313
             Y + GD+  A + F+M+  +D +SW+ +I+G A +G   +AL +F  +  +    +  
Sbjct: 336 TGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRA 395

Query: 314 TFIALISACS 323
           TF   +S C+
Sbjct: 396 TFGCALSTCA 405



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 98/416 (23%), Positives = 171/416 (41%), Gaps = 71/416 (17%)

Query: 74  PDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAH 133
           PD++ W   IS   + G    A+ +F   +  P  +++         L + K   A   +
Sbjct: 47  PDILKWNKAISTHMRNGHCDSALHVF---NTMPRRSSVSYNAMISGYLRNSKFNLA--RN 101

Query: 134 SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
               + E ++   N +L  Y+R   L     LF  MP+++VVSW +++ GYA+ G+  EA
Sbjct: 102 LFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEA 161

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS--------YISTRYDLSVS 245
             VF  M      E N  +   +L+A           YVH+           ++ D  + 
Sbjct: 162 REVFDNM-----PEKNSISWNGLLAA-----------YVHNGRIEEACLLFESKSDWDL- 204

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
            +  N ++  +V+   +G A  +F+ +  +D ISW+T+ISG A  G   QA +LF     
Sbjct: 205 -ISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPT 263

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMS------------------------TV 341
             VF    T+ A++S     G++D+    F  M                          +
Sbjct: 264 RDVF----TWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIAREL 319

Query: 342 YEIVP--QMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL----NACRIHRN 395
           +E +P   +  +  ++  YG+ G + +A  F   MP + +   W A++     +      
Sbjct: 320 FESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMP-QRDCVSWAAIIAGYAQSGHYEEA 378

Query: 396 DEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGC 451
             MF  I+QD    + ++  TF    +T A     E   +I  +  +MG    TGC
Sbjct: 379 LNMFVEIKQD---GESLNRATFGCALSTCADIAALELGKQIHGQAVKMGY--GTGC 429



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 13/185 (7%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S N  TF  AL  C+     +   +IH   ++ G+    F+ N+LL  Y     I  A+ 
Sbjct: 391 SLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEAND 450

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVS 123
            F  +   DVVSW T+++G ++ GF ++A+ +F  +    VKP+  T+V VLSACS    
Sbjct: 451 TFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGL 510

Query: 124 HKLGKAIHAHSLRNLNENNIILDNA-----ILDFYIRCGSLASCGYLFVKMP-KRNVVSW 177
              G         ++ ++  ++  +     ++D   R G L     L   MP +    SW
Sbjct: 511 LDRG----TEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASW 566

Query: 178 TTMIG 182
             ++G
Sbjct: 567 GALLG 571



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/271 (21%), Positives = 116/271 (42%), Gaps = 55/271 (20%)

Query: 112 VSVLSACSSLVSHKLGKAIHAHSLRNLN-----ENNIILDNAILDFYIRCGSLASCGYLF 166
           + V   C+    H       + S+ N N     + +I+  N  +  ++R G   S  ++F
Sbjct: 13  LRVRRVCTINFGHTSTSTRRSESVTNNNKPRVKDPDILKWNKAISTHMRNGHCDSALHVF 72

Query: 167 VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 226
             MP+R+ VS+  MI GY        A ++F +M +                        
Sbjct: 73  NTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPER----------------------- 109

Query: 227 SFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
                         DL       N ++  YV+   +G A ++F+++  KD +SW++++SG
Sbjct: 110 --------------DL----FSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSG 151

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 346
            A NG   +A ++F     N    + +++  L++A  H G +++  +LF++ S  ++++ 
Sbjct: 152 YAQNGYVDEAREVFD----NMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSD-WDLIS 206

Query: 347 QMQHYACVVDMYGRAGLLEEAEAFIREMPIE 377
               + C++  + R   L +A     +MP+ 
Sbjct: 207 ----WNCLMGGFVRKKKLGDARWLFDKMPVR 233



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 68/169 (40%), Gaps = 56/169 (33%)

Query: 292 CGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY 351
           CG   LQ F L++I                  + GL+D G   F  M+  Y + P  +HY
Sbjct: 762 CGDYWLQFFLLVVI------------------YTGLLDTGAEYFYPMNEEYSVTPTSKHY 803

Query: 352 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKG 411
            C++D+ GR   LEE                 GALL A RIH N E+ ++  Q       
Sbjct: 804 TCMIDLLGRVDRLEE-----------------GALLGASRIHGNTELGEKAAQ------- 839

Query: 412 VSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
                F  M    +G       +K+RD    +G++K  G SW EV   I
Sbjct: 840 ----MFFKMGPQNSG------ISKMRD----VGVQKVPGYSWFEVQNKI 874


>gi|345505232|gb|AEN99840.1| chlororespiratory reduction 4, partial [Olimarabidopsis pumila]
          Length = 579

 Score =  267 bits (682), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 155/492 (31%), Positives = 256/492 (52%), Gaps = 36/492 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML      + ++ +  +KACS     +  L+IH  + + G   D+F+QN L+  Y+    
Sbjct: 78  MLEIGVPVDKFSLSLVMKACSRLGFVKGGLQIHGFLKKTGLWSDLFLQNCLIGLYLKCGC 137

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNA-NTLVSVLSACS 119
           +  A QIF+ +   D VS+ ++I G  KCG  + A ++F   D+ P     L+S  S  S
Sbjct: 138 LGFARQIFDRMPQRDSVSYNSMIDGYVKCGSIESASELF---DLMPREMKNLISWNSLIS 194

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
                  G  I +     + E ++I  N+++D Y++ G +     LF  +P+R+VV+W T
Sbjct: 195 GYAQTSEGVDIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDMVPRRDVVTWAT 254

Query: 180 MIGGYAERGFCK-------------------------------EAVSVFQEMEKTKEAEP 208
           MI GYA+ GF                                 EA+ +F +MEK     P
Sbjct: 255 MIDGYAKLGFVHQAKTLFDQMPHRDVVAYNSMMAGYVQNRFHMEALEIFSDMEKESHLSP 314

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           +E TLV VLSA + +  LS    +H YI  +  L +   +G A+I+MY KCG +  A+ V
Sbjct: 315 DETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFL-LGGKLGVALIDMYSKCGSIQHAMLV 373

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F  +  K    W+ +I GLA++G G  A  +   +   ++ PDD+TF+ +++ACSH GLV
Sbjct: 374 FEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLV 433

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
            +GL+ F+ M   ++I P++QHY C+VD+  R+G +E A+  I EMPIE    +W   L 
Sbjct: 434 KEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLT 493

Query: 389 ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
           AC  H+  E  + + + L+ +   +  ++ L+SN +A    W+D  ++R  ++   ++K 
Sbjct: 494 ACSHHKEFETGELVAKHLILQADYNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKI 553

Query: 449 TGCSWIEVNPSI 460
            GCSWIE++  +
Sbjct: 554 PGCSWIELDGXV 565



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 157/373 (42%), Gaps = 59/373 (15%)

Query: 75  DVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKLGKAIH 131
           D   W  +I   S     + A+ +FC    I V  +  +L  V+ ACS L   K G  IH
Sbjct: 51  DPYLWNAMIKSHSHGTDPRRALLLFCLMLEIGVPVDKFSLSLVMKACSRLGFVKGGLQIH 110

Query: 132 AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
               +    +++ L N ++  Y++CG L     +F +MP+R+ VS+ +MI GY + G  +
Sbjct: 111 GFLKKTGLWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSIE 170

Query: 192 EAVSVFQEMEKTKEAEPNE-ATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG- 249
            A  +F  M       P E   L++  S  S  +  S G  + S +    ++   +L+  
Sbjct: 171 SASELFDLM-------PREMKNLISWNSLISGYAQTSEGVDIASKLFA--EMPEKDLISW 221

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
           N++I+ YVK G +  A  +F+M+  +D ++W+T+I G A  G   QA  LF  M    V 
Sbjct: 222 NSMIDGYVKHGRIEDAKDLFDMVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVV 281

Query: 310 --------------------------------PDDVTFIALISACSHGGLVDQGLILFKA 337
                                           PD+ T + ++SA +  G       L KA
Sbjct: 282 AYNSMMAGYVQNRFHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGR------LSKA 335

Query: 338 MSTVYEIVPQM-----QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI 392
           M     IV +      +    ++DMY + G ++ A   + E         W A++    I
Sbjct: 336 MDMHLYIVEKQFLLGGKLGVALIDMYSKCGSIQHA-MLVFEGIENKSIDHWNAMIGGLAI 394

Query: 393 H-RNDEMFDRIRQ 404
           H   +  FD + Q
Sbjct: 395 HGLGESAFDMLLQ 407


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  267 bits (682), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 147/466 (31%), Positives = 261/466 (56%), Gaps = 17/466 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  TF  A+K+CS         + H   + +G   D+F+ ++L+  Y     + +A  +F
Sbjct: 81  NRSTFPCAIKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLF 140

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF----------CGIDVKPNANT--LVSVLS 116
           + +   ++V+WT++I+G  +     EA+ +F           G +V  + ++  ++SVLS
Sbjct: 141 DEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLS 200

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
           ACS + +  + + +H  +++   +  + ++N +LD Y +CG ++    +F  M +++VVS
Sbjct: 201 ACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVS 260

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY- 235
           W +MI  YA+ G   +A  VF  M K    + NE TL  +L AC+   AL  G  +H   
Sbjct: 261 WNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQV 320

Query: 236 ISTRYDLSVSNLV-GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
           I   Y   V+N++   ++I+MY KCG   +A   F+ +  K+  SW+ +I+G  M+G  R
Sbjct: 321 IKMGY---VNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAR 377

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
           +AL +F  MI   V P+ +TFI++++ACSH G +++G   F AMS  Y + P ++HY C+
Sbjct: 378 EALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCM 437

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414
           VD+ GRAG ++EA   I+ M +  ++ +WG+LL ACRIH++ E+ +   ++L      + 
Sbjct: 438 VDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNC 497

Query: 415 GTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           G + L++N +A A RW+D  ++R  ++  GL K  G S +E+   +
Sbjct: 498 GYYVLLANIYADAGRWKDVERMRILVKDRGLVKPPGYSLVELKGRV 543



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 176/331 (53%), Gaps = 15/331 (4%)

Query: 75  DVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKLGKAIH 131
           DV SW ++I+ L++ G   E++  F     +D+KPN +T    + +CS+L     GK  H
Sbjct: 46  DVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSGKQAH 105

Query: 132 AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
             +L    E+++ + +A++D Y +CG L++   LF ++P+RN+V+WT++I GY +     
Sbjct: 106 QQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAH 165

Query: 192 EAVSVFQE--MEKTKEAEPNEAT------LVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           EA+ VF+E   EK++       T      +++VLSACS +S  +  + VH  ++ +  L 
Sbjct: 166 EALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHG-VAIKVGLD 224

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
               V N +++ Y KCG+V ++ +VF+ +A KD +SW+++I+  A NG    A ++F  M
Sbjct: 225 KVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGM 284

Query: 304 I-INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
           +       ++VT   L+ AC+H G +  G+ L   +  +   V  +     ++DMY + G
Sbjct: 285 LKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKM-GYVNNVIMATSIIDMYCKCG 343

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
             E A      M  E     W A++    +H
Sbjct: 344 QAEMARNAFDGMK-EKNVRSWTAMIAGYGMH 373



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 141/286 (49%), Gaps = 6/286 (2%)

Query: 6   SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAH 65
           +S +       L ACS       +  +H   I+ G    + ++N+LL  Y    ++  + 
Sbjct: 188 TSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSR 247

Query: 66  QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSL 121
           ++F+ +   DVVSW ++I+  ++ G   +A ++F G+      K N  TL ++L AC+  
Sbjct: 248 KVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHE 307

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
            + ++G  +H   ++    NN+I+  +I+D Y +CG        F  M ++NV SWT MI
Sbjct: 308 GALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMI 367

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
            GY   GF +EA+ VF +M      +PN  T ++VL+ACS    L  G    + +S  Y+
Sbjct: 368 AGYGMHGFAREALDVFYQMIWAG-VKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYN 426

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVF-NMLAYKDKISWSTVISG 286
           +         ++++  + G +  A  +  +M   +D + W ++++ 
Sbjct: 427 VEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAA 472


>gi|449456661|ref|XP_004146067.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 793

 Score =  267 bits (682), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 153/459 (33%), Positives = 261/459 (56%), Gaps = 11/459 (2%)

Query: 6   SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAH 65
           ++ +  T   A+ A S     + A ++HA VI+   +  + + N+L+  Y     I ++ 
Sbjct: 286 AAIDEVTLLSAISAASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSF 345

Query: 66  QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLV 122
           +IF+++   DVVSW T+IS   + G + EA+ +F  +   D+  ++ T+ ++LSA S L 
Sbjct: 346 KIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLR 405

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKM--PKRNVVSWTTM 180
           +  +GK  H + LRN  +    +D+ ++D Y + G + +   +F K    +R+  +W +M
Sbjct: 406 NPDIGKQTHGYLLRNGIQFEG-MDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSM 464

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           + GY + G   +A  + ++M   K   PN  TL ++L AC+    + +GK +H + S R 
Sbjct: 465 MSGYTQNGLVDQAFLILRQMLDQK-VMPNVVTLASILPACNPSGYIDWGKQLHGF-SIRN 522

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
           DL  +  V  A+I+MY K G +  A  VF+    K  +++ST+I G   +G G  AL +F
Sbjct: 523 DLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGESALFMF 582

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
             M  + + PD VT +A++SACS+ GLVD+GL +F++M TVY I P  +H+ CV DM GR
Sbjct: 583 HRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPSTEHFCCVADMLGR 642

Query: 361 AGLLEEAEAFIREMPIEAE-WSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVS--VGTF 417
           AG +++A  F+  +  +     +WG+LL ACRIH+  E+   + + L+  + ++   G  
Sbjct: 643 AGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRIHKQFELGKLVAKKLLEMEKINGKTGYH 702

Query: 418 ALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
            L+SN +A    WE+ + +R ++R  GLKK+TG SWIE+
Sbjct: 703 VLLSNIYAEERNWENVDIVRKQMRERGLKKETGSSWIEI 741



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 117/442 (26%), Positives = 212/442 (47%), Gaps = 47/442 (10%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYV----TVKD--IF 62
           + YT++  LKAC+          +HAH +         + NSLL+ Y     T  D  + 
Sbjct: 71  DSYTYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMV 130

Query: 63  SAH-------QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLV 112
           S +       ++F+++    VV+W T+I+   +   + EA+  F     I +KP+  + V
Sbjct: 131 SGYSRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFV 190

Query: 113 SVLSACSSLVSHKLGKAIHAHSLRNLNE--NNIILDNAILDFYIRCGSLASCGYLFVKMP 170
           +V  A SSL   K    +H   ++  +E  N++ + ++ +  Y   G L     +F    
Sbjct: 191 NVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCL 250

Query: 171 KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGK 230
           +RN   W TMI  + +  F  E + +F +  ++++A  +E TL++ +SA S +      +
Sbjct: 251 ERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAE 310

Query: 231 YVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAM 289
            +H+++    +++V+ + V NA+I MY +C  +  + ++F+ +  KD +SW+T+IS    
Sbjct: 311 QLHAFVIK--NVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQ 368

Query: 290 NGCGRQALQLFSLMIINAVFPDDVTFIALISACS-----------HGGLVDQGLILFKAM 338
           NG   +AL LF  M    +  D VT  AL+SA S           HG L+  G I F+ M
Sbjct: 369 NGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNG-IQFEGM 427

Query: 339 STVYEIVPQMQHYACVVDMYGRAGLLEEAE-AFIREMPIEAEWSVWGALLNA-CRIHRND 396
            +             ++DMY ++GL+E A+  F +    E + + W ++++   +    D
Sbjct: 428 DSY------------LIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVD 475

Query: 397 EMFDRIRQDLVNKKGVSVGTFA 418
           + F  +RQ L  K   +V T A
Sbjct: 476 QAFLILRQMLDQKVMPNVVTLA 497



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 107/375 (28%), Positives = 170/375 (45%), Gaps = 40/375 (10%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI-----DVKPNANTLVSVLSAC 118
           A Q+F+++  P  V W TII GL    F  EA+  +  +      VK ++ T  SVL AC
Sbjct: 23  ARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSVLKAC 82

Query: 119 SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYL------------- 165
           +   +  +GKA+HAH LR L   + I+ N++L+ Y  C S    G +             
Sbjct: 83  ADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRKV 142

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
           F  M KR VV+W T+I  Y       EAV  F  M K    +P+  + VNV  A SS+  
Sbjct: 143 FDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIG-IKPSPVSFVNVFPAFSSLGD 201

Query: 226 LSFGKYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVI 284
                 VH  +       V++L V ++ I MY + G +  A +VF+    ++   W+T+I
Sbjct: 202 FKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMI 261

Query: 285 SGLAMNGCGRQALQLFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 343
           S    N    + +QLF   + +     D+VT ++ ISA SH       L  F+    ++ 
Sbjct: 262 SAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASH-------LQKFELAEQLHA 314

Query: 344 I------VPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRND 396
                  V Q+     ++ MY R   ++ +      MP E +   W  +++A  +   ND
Sbjct: 315 FVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMP-EKDVVSWNTMISAFVQNGLND 373

Query: 397 E----MFDRIRQDLV 407
           E     ++  +QDL+
Sbjct: 374 EALMLFYEMKKQDLM 388



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 113/248 (45%), Gaps = 17/248 (6%)

Query: 157 GSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK-EAEPNEATLVN 215
           G L     LF  +P+ + V W T+I G     F  EA+  +  M+ +  + + +  T  +
Sbjct: 18  GQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSS 77

Query: 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV------------- 262
           VL AC+    L  GK VH++   R  ++ S +V N+++NMY  C                
Sbjct: 78  VLKACADTRNLVVGKAVHAHF-LRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRC 136

Query: 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322
            +  +VF+ +  +  ++W+T+I+         +A++ FS+M+   + P  V+F+ +  A 
Sbjct: 137 DLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAF 196

Query: 323 SHGGLVDQGLILFKAMSTV-YEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 381
           S  G      ++   +  +  E V  +   +  + MY   G LE A+  + +  +E    
Sbjct: 197 SSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKK-VFDNCLERNTE 255

Query: 382 VWGALLNA 389
           VW  +++A
Sbjct: 256 VWNTMISA 263


>gi|15240281|ref|NP_198573.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170664|sp|Q9FHR3.1|PP403_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g37570
 gi|9757967|dbj|BAB08303.1| unnamed protein product [Arabidopsis thaliana]
 gi|332006824|gb|AED94207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 550

 Score =  267 bits (682), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 148/449 (32%), Positives = 243/449 (54%), Gaps = 12/449 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YTF   +K CS     +    +H  V+  G   D+ +  S + FY   KD+FSA ++F
Sbjct: 109 DEYTFPLVMKVCSNNGQVRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVF 168

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSH--KL 126
             +   + VSWT ++    K G  +EA  MF   D+ P  N     L + ++LV    K 
Sbjct: 169 GEMPERNAVSWTALVVAYVKSGELEEAKSMF---DLMPERN-----LGSWNALVDGLVKS 220

Query: 127 GKAIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           G  ++A  L + + + +II   +++D Y + G + S   LF +    +V +W+ +I GYA
Sbjct: 221 GDLVNAKKLFDEMPKRDIISYTSMIDGYAKGGDMVSARDLFEEARGVDVRAWSALILGYA 280

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G   EA  VF EM   K  +P+E  +V ++SACS +      + V SY+  R +   S
Sbjct: 281 QNGQPNEAFKVFSEM-CAKNVKPDEFIMVGLMSACSQMGCFELCEKVDSYLHQRMNKFSS 339

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
           + V  A+I+M  KCG +  A ++F  +  +D +S+ +++ G+A++GCG +A++LF  M+ 
Sbjct: 340 HYVVPALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGCGSEAIRLFEKMVD 399

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             + PD+V F  ++  C    LV++GL  F+ M   Y I+    HY+C+V++  R G L+
Sbjct: 400 EGIVPDEVAFTVILKVCGQSRLVEEGLRYFELMRKKYSILASPDHYSCIVNLLSRTGKLK 459

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EA   I+ MP EA  S WG+LL  C +H N E+ + + + L   +  S G++ L+SN +A
Sbjct: 460 EAYELIKSMPFEAHASAWGSLLGGCSLHGNTEIAEVVARHLFELEPQSAGSYVLLSNIYA 519

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
             DRW D   +RD++   G+ K  G SWI
Sbjct: 520 ALDRWTDVAHLRDKMNENGITKICGRSWI 548



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 146/317 (46%), Gaps = 22/317 (6%)

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAID-----MFCGIDVKPNANTLVSVLSACSSL 121
           +F  V  P    W  +I G S      E +      M  G+  +P+  T   V+  CS+ 
Sbjct: 65  VFERVPSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGL-ARPDEYTFPLVMKVCSNN 123

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
              ++G ++H   LR   + ++++  + +DFY +C  L S   +F +MP+RN VSWT ++
Sbjct: 124 GQVRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALV 183

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
             Y + G  +EA S+F  M      E N  +   ++        L   K +   +  R  
Sbjct: 184 VAYVKSGELEEAKSMFDLM-----PERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDI 238

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
           +S +++     I+ Y K GD+  A  +F      D  +WS +I G A NG   +A ++FS
Sbjct: 239 ISYTSM-----IDGYAKGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFS 293

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQM-QHY--ACVVDMY 358
            M    V PD+   + L+SACS  G  +   +  K  S +++ + +   HY    ++DM 
Sbjct: 294 EMCAKNVKPDEFIMVGLMSACSQMGCFE---LCEKVDSYLHQRMNKFSSHYVVPALIDMN 350

Query: 359 GRAGLLEEAEAFIREMP 375
            + G ++ A     EMP
Sbjct: 351 AKCGHMDRAAKLFEEMP 367


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  267 bits (682), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 143/436 (32%), Positives = 243/436 (55%), Gaps = 8/436 (1%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           +HA   + G      +   L+  Y    D+  A  +F+ +  PD+V++  +ISG S  G 
Sbjct: 243 VHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGM 302

Query: 92  HKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148
              ++++F    G+ ++P+++TLV+++   S      L   +HAH ++   + N  +  A
Sbjct: 303 VGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTA 362

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
           +   Y R   + S    F  MP++ + SW  MI GYA+ G  + AV++FQ+M+      P
Sbjct: 363 LTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALN-VRP 421

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           N  T+ + LSAC+ + ALS GK+VH  I+    L ++  V  A+I+MYVKCG +  A  +
Sbjct: 422 NPLTISSALSACAQLGALSLGKWVHKIIANE-KLELNVYVMTALIDMYVKCGSIAEARCI 480

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F+ +  K+ +SW+ +ISG  ++G G +AL+L+  M+   + P   TF++++ ACSHGGLV
Sbjct: 481 FDSMDNKNVVSWNVMISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLV 540

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEA-EWSVWGALL 387
            +G  +F++M++ Y I P ++H  C+VD+ GRAG L+EA   I E P  A    +WGALL
Sbjct: 541 KEGTTVFRSMTSDYGITPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGIWGALL 600

Query: 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447
            AC +H++ ++     Q L   +  + G + L+SN +    ++ +   +R E +   L K
Sbjct: 601 GACMVHKDGDLAKLASQKLFELEPENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVK 660

Query: 448 KTGCSWIEV--NPSIF 461
             GC+ IE+   P +F
Sbjct: 661 TPGCTLIEIGDRPHVF 676



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 184/378 (48%), Gaps = 6/378 (1%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           +HA  +  G   D F+ ++L   Y T+     A ++F++V  PD V W T+++GLS    
Sbjct: 145 LHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGLSGSEA 204

Query: 92  HKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR-NLNENNIILDNAIL 150
            +  + M     V+P++ TL SVL A + + +  +G+ +HA   +  L ++  ++   ++
Sbjct: 205 LEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVV-TGLI 263

Query: 151 DFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNE 210
             Y +CG +    +LF +M   ++V++  +I GY+  G    +V +F+E+       P+ 
Sbjct: 264 SLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMG-LRPSS 322

Query: 211 ATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN 270
           +TLV ++   S          +H+++  +  L  +  V  A+  +Y +  D+  A + F+
Sbjct: 323 STLVALIPVHSPFGHEPLAGCLHAHV-VKAGLDANAPVSTALTTLYCRFNDMDSARRAFD 381

Query: 271 MLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQ 330
            +  K   SW+ +ISG A NG    A+ LF  M    V P+ +T  + +SAC+  G +  
Sbjct: 382 AMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSL 441

Query: 331 GLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 390
           G  + K ++   ++   +     ++DMY + G + EA      M  +   S W  +++  
Sbjct: 442 GKWVHKIIAN-EKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVS-WNVMISGY 499

Query: 391 RIHRNDEMFDRIRQDLVN 408
            +H       ++ +D+++
Sbjct: 500 GLHGQGAEALKLYKDMMD 517


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 145/458 (31%), Positives = 259/458 (56%), Gaps = 6/458 (1%)

Query: 6   SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAH 65
           +S   + +  A+ AC       +  ++HA +I   +   +F+   L+  YV    +  A 
Sbjct: 38  ASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDAR 97

Query: 66  QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLV 122
            + + +    VVSWTT+ISG S+   H EA+D+F  +      PN  TL +VL++CS   
Sbjct: 98  NVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQ 157

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
           S   GK +H+  ++   E+++ + +++LD Y +  ++     +F  +P+R+VVS T +I 
Sbjct: 158 SIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIIS 217

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
           GYA++G  +EA+ +F+++  ++  + N  T   +++A S +++L +GK VH+ I  R +L
Sbjct: 218 GYAQKGLDEEALDLFRQL-YSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALI-LRKEL 275

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
                + N++I+MY KCG +  + +VF+ +  +  +SW+ ++ G   +G G + + LF  
Sbjct: 276 PFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFK- 334

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
            +   V PD VT +A++S CSHGGLVD+GL +F  +      +    HY C++D+ GR+G
Sbjct: 335 DLHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSG 394

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSN 422
            LE+A   I  MP E+  S+WG+LL ACR+H N  + + + Q L+  +  + G + ++SN
Sbjct: 395 RLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSN 454

Query: 423 TFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            +A A  W+D  K+R  +    + K+ G SWI ++  I
Sbjct: 455 IYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVI 492


>gi|449451649|ref|XP_004143574.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
 gi|449516723|ref|XP_004165396.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 145/431 (33%), Positives = 249/431 (57%), Gaps = 7/431 (1%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV--VFPDVVSWTTIISGLSKC 89
           +HA  IE G   D  + N+ +  Y    ++  A  +F+ +       VSW ++I+  +  
Sbjct: 175 VHAIGIETGLDADTSVSNTWIAAYSKCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHF 234

Query: 90  GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
           G + +A+  + G+     KP+A+T++S+LS+C    +   G  IH H  +   +++I L 
Sbjct: 235 GKYVDAVKSYKGLLCDGFKPDASTIISLLSSCQQPEALIYGFLIHGHGFQLGCDSDISLI 294

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           N ++  Y RCG ++S   LF  M  R  VSWT MI GY+E G   +A+ +F  ME+T E 
Sbjct: 295 NTLISMYSRCGDISSATILFDGMSIRTCVSWTAMISGYSEVGRVDDALVLFNAMEETGE- 353

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
           +P+  T+++++S C    AL  G ++ +Y S  ++L    +V NA+I+MY KCG +  A 
Sbjct: 354 KPDIVTVLSLISGCGKTGALGLGHWIDNYASL-HELKKDVVVCNALIDMYAKCGSLNDAR 412

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
           ++F  L  +  +SW+ +I+  A+NG  R+AL LFSL+  + + P+++TF+A++ AC HGG
Sbjct: 413 EIFYSLPNRTVVSWTAMIAACALNGEFREALDLFSLLSESGIEPNNITFLAVLQACCHGG 472

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 386
            +++G   F  M+  Y I P + HY+C++D+ GR G L EA   I++MP++ +  +WGAL
Sbjct: 473 YLEKGRECFMMMTERYGINPGLDHYSCMIDLLGRKGKLIEALEVIQDMPMKPDEGIWGAL 532

Query: 387 LNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446
           L AC+IH N E+ + + + L   +     +F  M+N +A   RW++   +R  +R   ++
Sbjct: 533 LGACKIHNNMEIGEYVSRYLFELQPRVAVSFVEMANIYASVGRWDEVAAMRKTMRSNQMR 592

Query: 447 KKTGCSWIEVN 457
           K  G S ++VN
Sbjct: 593 KSPGKSVVQVN 603



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 201/394 (51%), Gaps = 17/394 (4%)

Query: 9   NHYTFTQALKACS-LAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           N++TF    KAC+ L+H     + IH HV++     DI++Q +++  YV    +  A+ +
Sbjct: 51  NNFTFPFLSKACAKLSHLTNSQI-IHTHVVKSPFYSDIYVQTAMVDMYVKCGKVDDAYNL 109

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLVSH 124
           F+ +   ++ SW  +I G S+ G      ++F G   +  +P+A T++ +  A  S  S 
Sbjct: 110 FDKMPVRNIASWNAMIIGFSQIGSLDRVFNLFMGMRLVGTRPDAATVIGLTRAVISAKSL 169

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLF--VKMPKRNVVSWTTMIG 182
           +  KA+HA  +    + +  + N  +  Y +CG L     +F  ++   R+ VSW ++I 
Sbjct: 170 RFLKAVHAIGIETGLDADTSVSNTWIAAYSKCGELQLAKMVFHGIQKTARSSVSWNSLIA 229

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY---ISTR 239
            YA  G   +AV  ++ +      +P+ +T++++LS+C    AL +G  +H +   +   
Sbjct: 230 CYAHFGKYVDAVKSYKGL-LCDGFKPDASTIISLLSSCQQPEALIYGFLIHGHGFQLGCD 288

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
            D+S+     N +I+MY +CGD+  A  +F+ ++ +  +SW+ +ISG +  G    AL L
Sbjct: 289 SDISLI----NTLISMYSRCGDISSATILFDGMSIRTCVSWTAMISGYSEVGRVDDALVL 344

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
           F+ M      PD VT ++LIS C   G +  G  +    ++++E+   +     ++DMY 
Sbjct: 345 FNAMEETGEKPDIVTVLSLISGCGKTGALGLGHWI-DNYASLHELKKDVVVCNALIDMYA 403

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           + G L +A      +P     S W A++ AC ++
Sbjct: 404 KCGSLNDAREIFYSLPNRTVVS-WTAMIAACALN 436



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 145/316 (45%), Gaps = 9/316 (2%)

Query: 79  WTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHKLGKAIHAHSL 135
           W + I G    G   +A+ +F  + +   +PN  T   +  AC+ L      + IH H +
Sbjct: 20  WNSSIRGAVNQGNASKALALFHQLKLNGLQPNNFTFPFLSKACAKLSHLTNSQIIHTHVV 79

Query: 136 RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVS 195
           ++   ++I +  A++D Y++CG +     LF KMP RN+ SW  MI G+++ G      +
Sbjct: 80  KSPFYSDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIASWNAMIIGFSQIGSLDRVFN 139

Query: 196 VFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINM 255
           +F  M +     P+ AT++ +  A  S  +L F K VH+ I     L     V N  I  
Sbjct: 140 LFMGM-RLVGTRPDAATVIGLTRAVISAKSLRFLKAVHA-IGIETGLDADTSVSNTWIAA 197

Query: 256 YVKCGDVGIAIQVFNML--AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDV 313
           Y KCG++ +A  VF+ +    +  +SW+++I+  A  G    A++ +  ++ +   PD  
Sbjct: 198 YSKCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHFGKYVDAVKSYKGLLCDGFKPDAS 257

Query: 314 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIRE 373
           T I+L+S+C     +  G  L             +     ++ MY R G +  A      
Sbjct: 258 TIISLLSSCQQPEALIYGF-LIHGHGFQLGCDSDISLINTLISMYSRCGDISSATILFDG 316

Query: 374 MPIEAEWSVWGALLNA 389
           M I    S W A+++ 
Sbjct: 317 MSIRTCVS-WTAMISG 331


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 147/458 (32%), Positives = 247/458 (53%), Gaps = 8/458 (1%)

Query: 5   PSSY--NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIF 62
           PSS   N  TFT  L AC+       A  +       G+ HD+F+ ++LLH Y     + 
Sbjct: 100 PSSARPNSTTFTLTLTACARLGDLDAAESVRVRAFAAGYGHDVFVCSALLHLYSRCGAME 159

Query: 63  SAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACS 119
            A ++F+ +   D V+W+T+++G    G   EA+ M+  +    V  +   +V V+ AC 
Sbjct: 160 EAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALAMYSRMREHGVSDDEVVMVGVIQACM 219

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
           S  + ++G ++H   LR+    +++   +++  Y + G L     +F  MP RN V+W+ 
Sbjct: 220 STGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSA 279

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239
           +I G+A+ G   EA+ +F+E++     +P    LV+ L AC+S+  L  GK +H +I  R
Sbjct: 280 LISGFAQNGRAVEALDLFRELQ-ADGLQPCSWALVSALLACASVGFLKLGKSIHGFILRR 338

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
            +     ++G AV++MY KCG +  A ++FN L+ +D + W+ +I+    +GCG  AL L
Sbjct: 339 LEWQC--ILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAIIACCGTHGCGHDALAL 396

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
           F  +    + PD  TF +L+SA SH GLV++G   F  M   + I P  +HY C+VD+  
Sbjct: 397 FQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLLA 456

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFAL 419
           R+GL+EEA   +  M  E   ++W  LL+ C  ++  E+ + I + ++  +   +G  AL
Sbjct: 457 RSGLVEEANDMLASMQTEPTIAIWVILLSGCLNNKKLELGETIAKKILELRPEDIGVLAL 516

Query: 420 MSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           +SN +A A +W+   +IR  ++  G KK  G S IEV 
Sbjct: 517 VSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVK 554



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 161/322 (50%), Gaps = 17/322 (5%)

Query: 79  WTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR 136
           W  ++S  S+ G    A+ +F  +    +PN+ T    L+AC+ L      +++   +  
Sbjct: 76  WNGLLSAHSRAGAPGAALRVFRALPSSARPNSTTFTLTLTACARLGDLDAAESVRVRAFA 135

Query: 137 NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSV 196
               +++ + +A+L  Y RCG++     +F  MP+++ V+W+TM+ G+   G   EA+++
Sbjct: 136 AGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALAM 195

Query: 197 FQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMY 256
           +  M +   ++ +E  +V V+ AC S      G  VH  +  R+ + +  +   ++++MY
Sbjct: 196 YSRMREHGVSD-DEVVMVGVIQACMSTGNARIGASVHGRL-LRHCMRMDVVTTTSLVSMY 253

Query: 257 VKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFI 316
            K G + +A QVF M+ Y++ ++WS +ISG A NG   +AL LF  +  + + P     +
Sbjct: 254 AKNGHLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQADGLQPCSWALV 313

Query: 317 ALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC-----VVDMYGRAGLLEEAEAFI 371
           + + AC+  G +  G        +++  + +   + C     V+DMY + G LE A    
Sbjct: 314 SALLACASVGFLKLG-------KSIHGFILRRLEWQCILGTAVLDMYSKCGSLESARKLF 366

Query: 372 REMPIEAEWSVWGALLNACRIH 393
            ++    +  +W A++  C  H
Sbjct: 367 NKLS-SRDLVLWNAIIACCGTH 387


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 152/486 (31%), Positives = 256/486 (52%), Gaps = 36/486 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T   A+ AC+     +   ++   + E G   +  + N+LL  Y+   D+++  +IF
Sbjct: 222 NPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIF 281

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAI---DMFCGIDVKPNANTLVSVLSACSSLVSHK 125
           +     ++V + TI+S   + G   E +   D       +P+  T++S ++AC+ L    
Sbjct: 282 DEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLS 341

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSL-ASCGY-------------------- 164
           +GK+ HA+  RN  E    + NAI+D Y++CG   A+C                      
Sbjct: 342 VGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLV 401

Query: 165 ----------LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
                     +F +MP+ N+VSW TMIG   +    +EA+ + +EM+  +  + +  T+V
Sbjct: 402 RDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQ-NQGIKGDRVTMV 460

Query: 215 NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274
            + SAC  + AL   K++++YI  + D+ +   +G A+++M+ +CGD   A++VF  +  
Sbjct: 461 GIASACGYLGALDLAKWIYTYIE-KNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEK 519

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           +D  +W+  I   A+ G  + A++LF  M+   V  DD  F+AL++A SHGG VDQG  L
Sbjct: 520 RDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQL 579

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           F AM  ++ + PQ+ HY C+VD+ GRAGLLEEA   ++ MPI+    +WG+ L ACR H+
Sbjct: 580 FWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAACRKHK 639

Query: 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
           N E  +   + +       VG   L+SN +A A +W D  ++R +++  G +K  G S I
Sbjct: 640 NVEFANYADEKITQLAPEKVGIHVLLSNIYASAGKWNDVARVRLQMKEKGFQKVAGSSSI 699

Query: 455 EVNPSI 460
           EV+  I
Sbjct: 700 EVHGLI 705



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 123/437 (28%), Positives = 223/437 (51%), Gaps = 43/437 (9%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +++TF   L ACS      + +++H  V++ G + D+F+ NSL+HFY     +    ++F
Sbjct: 121 DNFTFPFLLSACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVF 180

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHK 125
           + ++  +VVSWT++I+G S     KEA+ +F     + V+PN  T+V  +SAC+ L   +
Sbjct: 181 DEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLE 240

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LGK +         ++N ++ NA+LD Y++CG + +   +F +   +N+V + T++  Y 
Sbjct: 241 LGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYV 300

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G   E + V  EM + K   P++ T+++ ++AC+ +  LS GK  H+Y+  R  L   
Sbjct: 301 QHGLAGEVLVVLDEMLQ-KGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYV-FRNGLERL 358

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM-- 303
           + + NA+I+MY+KCG    A +VF+ ++ K  ++W+++I+GL  +G    AL++F  M  
Sbjct: 359 DNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPE 418

Query: 304 --------IINAVFP---------------------DDVTFIALISACSHGGLVDQGLIL 334
                   +I A+                       D VT + + SAC + G +D    +
Sbjct: 419 SNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWI 478

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 394
           +  +    +I   MQ    +VDM+ R G    A      M  + + S W A +    +  
Sbjct: 479 YTYIEK-NDIHIDMQLGTALVDMFSRCGDPLNAMRVFENME-KRDVSAWTAAIRVKAVEG 536

Query: 395 ND----EMFDR-IRQDL 406
           N     E+FD  ++QD+
Sbjct: 537 NAKGAIELFDEMLKQDV 553



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 118/456 (25%), Positives = 209/456 (45%), Gaps = 30/456 (6%)

Query: 10  HYTFTQALKACSLAHPHQKALEIHAHVIEYGHLH------DIFIQNSLLHFYVTVKDIFS 63
           H + +  L   +   P   +L+    +IE   LH       +F  N L+   V +    S
Sbjct: 9   HQSSSPLLLPTTTQKPKNSSLQTCKTLIELKQLHCNMLKKGVFNINKLIAACVQMGTHES 68

Query: 64  AHQIFNSVVFPD-----VVSWTTIISGLSKCGFHKEAI----DMFCGIDVKPNANTLVSV 114
            +   N+    +     + +  T+I G +  G  KEAI     M   + + P+  T   +
Sbjct: 69  LNYALNAFKEDEGTKCSLYTCNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFL 128

Query: 115 LSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV 174
           LSACS +++   G  +H   ++     ++ + N+++ FY  CG +     +F +M +RNV
Sbjct: 129 LSACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNV 188

Query: 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
           VSWT++I GY+     KEAV +F EM +    EPN  T+V  +SAC+ +  L  GK V +
Sbjct: 189 VSWTSLINGYSVVNMAKEAVCLFFEMVEVG-VEPNPVTMVCAISACAKLKDLELGKKVCN 247

Query: 235 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
            + T   +  + LV NA+++MY+KCGD+    ++F+  + K+ + ++T++S    +G   
Sbjct: 248 LM-TELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAG 306

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA-- 352
           + L +   M+     PD VT ++ I+AC+  G +  G       S  Y     ++     
Sbjct: 307 EVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVG-----KSSHAYVFRNGLERLDNI 361

Query: 353 --CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKK 410
              ++DMY + G  E A      M  +   + W +L+         E+  RI  ++    
Sbjct: 362 SNAIIDMYMKCGKREAACKVFDSMSNKTVVT-WNSLIAGLVRDGELELALRIFGEMPESN 420

Query: 411 GVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446
            VS  T   M      A  +E+   +  E++  G+K
Sbjct: 421 LVSWNT---MIGAMVQASMFEEAIDLLREMQNQGIK 453


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 135/450 (30%), Positives = 257/450 (57%), Gaps = 6/450 (1%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +TF   L A       +   ++H+ V++   + ++F+ N+LL FY     I  A ++F  
Sbjct: 241 FTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYE 300

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHKLG 127
           +   D +S+  +I+  +  G  +E++++F  +             ++LS  ++ ++ ++G
Sbjct: 301 MPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMG 360

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           + IH+ ++     + +++ N+++D Y +C        +F  +  ++ V WT +I GY ++
Sbjct: 361 RQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQK 420

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G  ++ + +F EM + K    + AT  ++L AC+++++L+ GK +HS I     LS +  
Sbjct: 421 GLHEDGLKLFVEMHRAKIG-ADSATYASILRACANLASLTLGKQLHSRIIRSGCLS-NVF 478

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
            G+A+++MY KCG +  A+Q+F  +  ++ +SW+ +IS  A NG G  AL+ F  MI + 
Sbjct: 479 SGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSG 538

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           + P+ V+F++++ ACSH GLV++GL  F +M+ VY++ P+ +HYA +VDM  R+G  +EA
Sbjct: 539 LQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEA 598

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV-SVGTFALMSNTFAG 426
           E  +  MP E +  +W ++LN+CRIH+N E+  +    L N KG+     +  MSN +A 
Sbjct: 599 EKLMARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAA 658

Query: 427 ADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
           A  W+   K++  +R  G++K    SW+E+
Sbjct: 659 AGEWDSVGKVKKALRERGIRKVPAYSWVEI 688



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 196/390 (50%), Gaps = 19/390 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +H T    L   +      +  ++H HV++ G+   + + NSLL  Y   + +  A  +F
Sbjct: 138 DHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLF 197

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   D V++  +++G SK GF+ +AI++F  +     +P+  T  +VL+A   +   +
Sbjct: 198 KHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIE 257

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ +H+  ++     N+ + NA+LDFY +   +     LF +MP+ + +S+  +I   A
Sbjct: 258 FGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCA 317

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G  +E++ +F+E++ T+  +  +     +LS  ++   L  G+ +HS  +   D    
Sbjct: 318 WNGRVEESLELFRELQFTR-FDRRQFPFATLLSIAANSLNLEMGRQIHSQ-AIVTDAISE 375

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
            LVGN++++MY KC   G A ++F  LA++  + W+ +ISG    G     L+LF  M  
Sbjct: 376 VLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHR 435

Query: 306 NAVFPDDVTFIALISACSH------GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
             +  D  T+ +++ AC++      G  +   +I    +S V+         + +VDMY 
Sbjct: 436 AKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFS-------GSALVDMYA 488

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           + G ++EA    +EMP+    S W AL++A
Sbjct: 489 KCGSIKEALQMFQEMPVRNSVS-WNALISA 517



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 178/349 (51%), Gaps = 7/349 (2%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---C 100
           ++   N+++  Y+   ++ +A  +F+S+V   VV+WT +I G ++     EA ++F   C
Sbjct: 72  NVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMC 131

Query: 101 GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLA 160
              + P+  TL ++LS  +   S      +H H ++   ++ +++ N++LD Y +  SL 
Sbjct: 132 RHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLG 191

Query: 161 SCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220
              +LF  M +++ V++  ++ GY++ GF  +A+++F +M+      P+E T   VL+A 
Sbjct: 192 LACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLG-FRPSEFTFAAVLTAG 250

Query: 221 SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
             +  + FG+ VHS++  + +   +  V NA+++ Y K   +  A ++F  +   D IS+
Sbjct: 251 IQMDDIEFGQQVHSFV-VKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISY 309

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340
           + +I+  A NG   ++L+LF  +           F  L+S  ++   ++ G  +  + + 
Sbjct: 310 NVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQI-HSQAI 368

Query: 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           V + + ++     +VDMY +     EA     ++  ++    W AL++ 
Sbjct: 369 VTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVP-WTALISG 416


>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g35030, mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 141/414 (34%), Positives = 243/414 (58%), Gaps = 8/414 (1%)

Query: 49  NSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNA 108
           N+++  ++  + +  A ++FN +   DV+SWTT+++GLSK G   +A  +F  + V+   
Sbjct: 195 NTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVV 254

Query: 109 NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168
           +    ++    ++   +  K       R L+  N ++       +I+ G L      F K
Sbjct: 255 SWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITG-----FIQNGKLERAVDFFYK 309

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           M  +NVV+WT +I G+ + G  +EA+ +F EM+     +PNE T V+VL ACS ++AL  
Sbjct: 310 MSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCE 369

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN--MLAYKDKISWSTVISG 286
           G+ +H  IS      V+++V +A+INMY KCG++ +A ++F+   + ++D +SW+ +I+ 
Sbjct: 370 GQQIHQIISKTVYQEVADVV-SALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAA 428

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 346
            A +G G +A+ LF  M      PD+VT+IAL+SACSH GLVD+GL LF+ +     I  
Sbjct: 429 YAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKL 488

Query: 347 QMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDL 406
           +  H+ C+VD++GRAG L+EA  FI+ + ++   SVW ALL  C +H + ++     + L
Sbjct: 489 REDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDLGKLTAEKL 548

Query: 407 VNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +  +  + GT+ ++SN +A   +W +   +R +++  GLKK+ GCSWIEV  ++
Sbjct: 549 LETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGNTV 602



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 161/340 (47%), Gaps = 31/340 (9%)

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSS 120
           I  A Q+F  +   DVVSWT +I+G  KCG  +EA  +F   D   N  T  +++S    
Sbjct: 82  IGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDRNDAIKNVVTWTALVSGYV- 140

Query: 121 LVSHKLGKAIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
               +  +   A  L + +   N+I  N +++ Y R G +     LF  MP+RNVVSW T
Sbjct: 141 ----RWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEXMPERNVVSWNT 196

Query: 180 MIGGYAERGFCKEAVSVFQEMEK-------------TKEAEPNEATLV-------NVLSA 219
           +I  + +R    EA  +F  M +             +K    ++A L+       NV+S 
Sbjct: 197 VITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSW 256

Query: 220 CSSISALSFGKYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDKI 278
            + I   +    +         +    L   N +I  +++ G +  A+  F  ++ K+ +
Sbjct: 257 NTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVV 316

Query: 279 SWSTVISGLAMNGCGRQALQLFSLM-IINAVFPDDVTFIALISACSHGGLVDQGLILFKA 337
           +W+ VISG   +G   +AL++FS M   N V P++ TF++++ ACS    + +G  + + 
Sbjct: 317 TWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQI 376

Query: 338 MS-TVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPI 376
           +S TVY+ V  +   + +++MY + G LE A     +  I
Sbjct: 377 ISKTVYQEVADV--VSALINMYSKCGELELARKIFDDGSI 414



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 116/257 (45%), Gaps = 22/257 (8%)

Query: 135 LRNLNEN-NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
           +R+ + N N+   N ++    + G +     +F +MP R+VVSWT +I GY + G  +EA
Sbjct: 57  VRDFSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEA 116

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG-NAV 252
            ++F   +  K          NV++  + +S       +         + V N++  N +
Sbjct: 117 KTLFDRNDAIK----------NVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTM 166

Query: 253 INMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD 312
           I  Y + G +  A+ +F  +  ++ +SW+TVI+         +A +LF+ M       D 
Sbjct: 167 IEGYARKGWIDQALDLFEXMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPER----DV 222

Query: 313 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIR 372
           +++  +++  S  G +D   +LF  M      V  +  +  ++  Y +   L+EA     
Sbjct: 223 ISWTTMVAGLSKNGRIDDARLLFDKMP-----VRNVVSWNTMIIGYAQNMRLDEAFKLFE 277

Query: 373 EMPIEAEWSVWGALLNA 389
           +MP E E S W  ++  
Sbjct: 278 QMP-ERELSSWNTMITG 293



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 97/223 (43%), Gaps = 22/223 (9%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIE--YGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           N  TF   L ACS      +  +IH  + +  Y  + D+   ++L++ Y    ++  A +
Sbjct: 350 NEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVV--SALINMYSKCGELELARK 407

Query: 67  IFN--SVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSL 121
           IF+  S+   DVVSW  +I+  +  G   +AI +F     +  +P+  T +++LSACS  
Sbjct: 408 IFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHA 467

Query: 122 VSHKLGKAIHAHSLRN----LNENNIILDNAILDFYIRCGSLASCGYLFVK--MPKRNVV 175
                G  +  + +R+    L E++      ++D + R G L    + F+K    K +  
Sbjct: 468 GLVDEGLKLFENLVRDRSIKLREDHF---TCLVDLFGRAGRLQEA-FDFIKGLEVKPSAS 523

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLS 218
            W  ++ G    G            EK  E EP  A    VLS
Sbjct: 524 VWAALLAGCNVHGHIDLGKLT---AEKLLETEPENAGTYLVLS 563


>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 141/414 (34%), Positives = 243/414 (58%), Gaps = 8/414 (1%)

Query: 49  NSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNA 108
           N+++  ++  + +  A ++FN +   DV+SWTT+++GLSK G   +A  +F  + V+   
Sbjct: 195 NTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVV 254

Query: 109 NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168
           +    ++    ++   +  K       R L+  N ++       +I+ G L      F K
Sbjct: 255 SWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITG-----FIQNGKLERAVDFFYK 309

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           M  +NVV+WT +I G+ + G  +EA+ +F EM+     +PNE T V+VL ACS ++AL  
Sbjct: 310 MSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCE 369

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN--MLAYKDKISWSTVISG 286
           G+ +H  IS      V+++V +A+INMY KCG++ +A ++F+   + ++D +SW+ +I+ 
Sbjct: 370 GQQIHQIISKTVYQEVADVV-SALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAA 428

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 346
            A +G G +A+ LF  M      PD+VT+IAL+SACSH GLVD+GL LF+ +     I  
Sbjct: 429 YAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKL 488

Query: 347 QMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDL 406
           +  H+ C+VD++GRAG L+EA  FI+ + ++   SVW ALL  C +H + ++     + L
Sbjct: 489 REDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDLGKLTAEKL 548

Query: 407 VNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +  +  + GT+ ++SN +A   +W +   +R +++  GLKK+ GCSWIEV  ++
Sbjct: 549 LETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGNTV 602



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 162/340 (47%), Gaps = 31/340 (9%)

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSS 120
           I  A Q+F  +   DVVSWT +I+G  KCG  +EA  +F   D   N  T  +++S    
Sbjct: 82  IGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDRNDAIKNVVTWTALVSGYV- 140

Query: 121 LVSHKLGKAIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
               +  +   A  L + +   N+I  N +++ Y R G +     LF KMP+RNVVSW T
Sbjct: 141 ----RWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEKMPERNVVSWNT 196

Query: 180 MIGGYAERGFCKEAVSVFQEMEK-------------TKEAEPNEATLV-------NVLSA 219
           +I  + +R    EA  +F  M +             +K    ++A L+       NV+S 
Sbjct: 197 VITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSW 256

Query: 220 CSSISALSFGKYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDKI 278
            + I   +    +         +    L   N +I  +++ G +  A+  F  ++ K+ +
Sbjct: 257 NTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVV 316

Query: 279 SWSTVISGLAMNGCGRQALQLFSLM-IINAVFPDDVTFIALISACSHGGLVDQGLILFKA 337
           +W+ VISG   +G   +AL++FS M   N V P++ TF++++ ACS    + +G  + + 
Sbjct: 317 TWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQI 376

Query: 338 MS-TVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPI 376
           +S TVY+ V  +   + +++MY + G LE A     +  I
Sbjct: 377 ISKTVYQEVADV--VSALINMYSKCGELELARKIFDDGSI 414



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 116/257 (45%), Gaps = 22/257 (8%)

Query: 135 LRNLNEN-NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
           +R+ + N N+   N ++    + G +     +F +MP R+VVSWT +I GY + G  +EA
Sbjct: 57  VRDFSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEA 116

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG-NAV 252
            ++F   +  K          NV++  + +S       +         + V N++  N +
Sbjct: 117 KTLFDRNDAIK----------NVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTM 166

Query: 253 INMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD 312
           I  Y + G +  A+ +F  +  ++ +SW+TVI+         +A +LF+ M       D 
Sbjct: 167 IEGYARKGWIDQALDLFEKMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPER----DV 222

Query: 313 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIR 372
           +++  +++  S  G +D   +LF  M      V  +  +  ++  Y +   L+EA     
Sbjct: 223 ISWTTMVAGLSKNGRIDDARLLFDKMP-----VRNVVSWNTMIIGYAQNMRLDEAFKLFE 277

Query: 373 EMPIEAEWSVWGALLNA 389
           +MP E E S W  ++  
Sbjct: 278 QMP-ERELSSWNTMITG 293



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 97/223 (43%), Gaps = 22/223 (9%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIE--YGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           N  TF   L ACS      +  +IH  + +  Y  + D+   ++L++ Y    ++  A +
Sbjct: 350 NEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVV--SALINMYSKCGELELARK 407

Query: 67  IFN--SVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSL 121
           IF+  S+   DVVSW  +I+  +  G   +AI +F     +  +P+  T +++LSACS  
Sbjct: 408 IFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHA 467

Query: 122 VSHKLGKAIHAHSLRN----LNENNIILDNAILDFYIRCGSLASCGYLFVK--MPKRNVV 175
                G  +  + +R+    L E++      ++D + R G L    + F+K    K +  
Sbjct: 468 GLVDEGLKLFENLVRDRSIKLREDHF---TCLVDLFGRAGRLQEA-FDFIKGLEVKPSAS 523

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLS 218
            W  ++ G    G            EK  E EP  A    VLS
Sbjct: 524 VWAALLAGCNVHGHIDLGKLT---AEKLLETEPENAGTYLVLS 563


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 139/418 (33%), Positives = 243/418 (58%), Gaps = 13/418 (3%)

Query: 45  IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF----- 99
           + + N+L+   +  K I  A  +F  +V  D ++WTT+++GL++ G   EA+D+F     
Sbjct: 212 VVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRA 271

Query: 100 --CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCG 157
              GID      T  S+L+AC +L + + GK IHA+  R   E+N+ + +A++D Y +C 
Sbjct: 272 EGVGID----QYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCR 327

Query: 158 SLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVL 217
           S+     +F +M  RN++SWT MI GY +    +EAV  F EM+     +P++ TL +V+
Sbjct: 328 SIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQ-MDGIKPDDFTLGSVI 386

Query: 218 SACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK 277
           S+C+++++L  G   H  ++    L     V NA++ +Y KCG +  A ++F+ +++ D+
Sbjct: 387 SSCANLASLEEGAQFHC-LALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ 445

Query: 278 ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKA 337
           +SW+ +++G A  G  ++ + LF  M+ N + PD VTFI ++SACS  GLV++G   F +
Sbjct: 446 VSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDS 505

Query: 338 MSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
           M   + IVP   HY C++D+Y R+G  +EAE FI++MP   +   W  LL++CR+  N E
Sbjct: 506 MQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNME 565

Query: 398 MFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
           +     ++L+     +  ++ L+ +  A   +W +   +R  +R   +KK+ GCSWI+
Sbjct: 566 IGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIK 623



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 197/402 (49%), Gaps = 42/402 (10%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI- 102
           ++F +N+LL      + +    ++F S+   D VS+  +I+G S  G    ++ ++  + 
Sbjct: 78  NLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALL 137

Query: 103 ---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR----------------------- 136
               V+P   TL +++   S+L    LG ++H   LR                       
Sbjct: 138 REESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLI 197

Query: 137 --------NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
                    +    +++ N ++   +RC  +     LF  M  R+ ++WTTM+ G  + G
Sbjct: 198 RDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNG 257

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS-TRYDLSVSNL 247
              EA+ VF+ M + +    ++ T  ++L+AC +++AL  GK +H+YI+ T Y+ +V   
Sbjct: 258 LQLEALDVFRRM-RAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNV--F 314

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           VG+A+++MY KC  + +A  VF  +  ++ ISW+ +I G   N C  +A++ FS M ++ 
Sbjct: 315 VGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDG 374

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           + PDD T  ++IS+C++   +++G   F  ++ V  ++  +     +V +YG+ G +E+A
Sbjct: 375 IKPDDFTLGSVISSCANLASLEEG-AQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDA 433

Query: 368 EAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDRIRQDLVN 408
                EM    + S W AL+    +  +  E  D   + L N
Sbjct: 434 HRLFDEMSFHDQVS-WTALVTGYAQFGKAKETIDLFEKMLAN 474



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 142/287 (49%), Gaps = 5/287 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YTF   L AC      ++  +IHA++    +  ++F+ ++L+  Y   + I  A  +F
Sbjct: 277 DQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVF 336

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   +++SWT +I G  +    +EA+  F  +    +KP+  TL SV+S+C++L S +
Sbjct: 337 RRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLE 396

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G   H  +L +     I + NA++  Y +CGS+     LF +M   + VSWT ++ GYA
Sbjct: 397 EGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYA 456

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G  KE + +F++M      +P+  T + VLSACS    +  G      +   + +   
Sbjct: 457 QFGKAKETIDLFEKM-LANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPI 515

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDKISWSTVISGLAMNG 291
           +     +I++Y + G    A +    + +  D   W+T++S   + G
Sbjct: 516 DDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRG 562


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 148/479 (30%), Positives = 256/479 (53%), Gaps = 41/479 (8%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           L ACS A   ++A E+HA V+  G   D  +   L   Y     +  +  +      P  
Sbjct: 31  LAACSTA---RRASELHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTKDPTT 87

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAH 133
           + +T+ I   S  G H   + +   +    + P A+TL + L AC  L    LG+A+HA+
Sbjct: 88  IFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPACRGL---SLGRALHAY 144

Query: 134 SLR-------------------------------NLNENNIILDNAILDFYIRCGSLASC 162
           + +                                + + +++   A+L  Y   G+L   
Sbjct: 145 AFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDA 204

Query: 163 GYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS 222
             LF  +P+++ + W  MI GY + G   EA+ +F+ M ++  AEP+E T+V VLSA + 
Sbjct: 205 RRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRS-SAEPDEVTVVLVLSAVAQ 263

Query: 223 ISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWST 282
           +  +  GK++HSY+     + ++  V  A+++MY KCG +  A+ VF+ +  KD + W+ 
Sbjct: 264 LGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNA 323

Query: 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 342
           +I+G AM+G  R+AL++F  +    ++P D+TFI L++ACSH GLV++G   F++M   Y
Sbjct: 324 MINGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEY 383

Query: 343 EIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRI 402
            I P+++HY C+VD+ GRAGL+EEA   ++ + I  +  +W +LL ACR+H+N  +  RI
Sbjct: 384 GIDPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLHKNMALGQRI 443

Query: 403 RQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
              LV     + G + L+SN +A   +WE+  ++R  ++  G++K+ GCS IE++  ++
Sbjct: 444 ADFLVANGLANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDRKVY 502


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 139/361 (38%), Positives = 220/361 (60%), Gaps = 8/361 (2%)

Query: 106 PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRC----GSLAS 161
           PN  T   VL AC+ + +  LGK++H   ++    + + + N ++  Y  C    G +  
Sbjct: 8   PNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEF 67

Query: 162 CGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221
              +F +M K + VSW+ MIGGY   G   +A+++F+EM+  K   P+E T+V+VLSAC+
Sbjct: 68  ARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQ-IKGVCPDEITMVSVLSACT 126

Query: 222 SISALSFGKYVHSYIST-RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280
            + AL  GK+V SY+   R   +V   + NA+I+M+ KCGDV  A  +F  +  ++ +SW
Sbjct: 127 GLGALELGKWVESYVEKERVQKNVE--LSNALIDMFAKCGDVDKATNLFRSMRERNIVSW 184

Query: 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340
           ++VI GLAM+G G +A+ +F  M+ + V PDDV FI L+SACSH GLVD+G   F +M  
Sbjct: 185 TSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRK 244

Query: 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFD 400
            + IVP+++HY C+VDM  RAGL++EA  F++EMPI+    VW  L+NACR H   ++ +
Sbjct: 245 DFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGELKLGE 304

Query: 401 RIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +I + L+  + +    + L+SN +A    WE   +IR+ +   G+KK  G + IE++  I
Sbjct: 305 KITRQLIRNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTMIELDNEI 364

Query: 461 F 461
           +
Sbjct: 365 Y 365



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 162/301 (53%), Gaps = 13/301 (4%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML      N +T+   LKAC+          +H  V+++G   ++ +QN+L+H Y   + 
Sbjct: 1   MLERKKLPNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRG 60

Query: 61  ----IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVS 113
               I  A ++F+ +   D VSW+ +I G  + G   +AI++F  + +K   P+  T+VS
Sbjct: 61  GEGGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVS 120

Query: 114 VLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
           VLSAC+ L + +LGK + ++  +   + N+ L NA++D + +CG +     LF  M +RN
Sbjct: 121 VLSACTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERN 180

Query: 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233
           +VSWT++IGG A  G   EAV+VF+EM ++    P++   + +LSACS    +  GK   
Sbjct: 181 IVSWTSVIGGLAMHGRGVEAVAVFEEMVRSG-VTPDDVVFIGLLSACSHSGLVDKGK--R 237

Query: 234 SYISTRYDLSVSNLVGN--AVINMYVKCGDVGIAIQ-VFNMLAYKDKISWSTVISGLAMN 290
            + S R D S+   + +   +++M  + G V  A++ V  M    + + W T+I+    +
Sbjct: 238 YFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAH 297

Query: 291 G 291
           G
Sbjct: 298 G 298


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 145/458 (31%), Positives = 259/458 (56%), Gaps = 6/458 (1%)

Query: 6   SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAH 65
           +S   + +  A+ AC       +  ++HA +I   +   +F+   L+  YV    +  A 
Sbjct: 6   ASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDAR 65

Query: 66  QIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLV 122
            + + +    VVSWTT+ISG S+   H EA+D+F  +      PN  TL +VL++CS   
Sbjct: 66  NVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQ 125

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
           S   GK +H+  ++   E+++ + +++LD Y +  ++     +F  +P+R+VVS T +I 
Sbjct: 126 SIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIIS 185

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
           GYA++G  +EA+ +F+++  ++  + N  T   +++A S +++L +GK VH+ I  R +L
Sbjct: 186 GYAQKGLDEEALDLFRQL-YSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALI-LRKEL 243

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
                + N++I+MY KCG +  + +VF+ +  +  +SW+ ++ G   +G G + + LF  
Sbjct: 244 PFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFK- 302

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
            +   V PD VT +A++S CSHGGLVD+GL +F  +      +    HY C++D+ GR+G
Sbjct: 303 DLHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSG 362

Query: 363 LLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSN 422
            LE+A   I  MP E+  S+WG+LL ACR+H N  + + + Q L+  +  + G + ++SN
Sbjct: 363 RLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSN 422

Query: 423 TFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            +A A  W+D  K+R  +    + K+ G SWI ++  I
Sbjct: 423 IYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVI 460


>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
          Length = 585

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 145/453 (32%), Positives = 252/453 (55%), Gaps = 8/453 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           ++YT+   LKAC       +   +    ++ G   D+F+ N L+  Y    +   A  +F
Sbjct: 109 DNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVF 168

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
           +     D+VSW +++ G   CG  + A +MF   D  P  +  V   S        K+G+
Sbjct: 169 DGFSEKDLVSWNSMLGGYVWCGEMENAQNMF---DEMPERD--VVSWSIMIDGYGKKMGE 223

Query: 129 AIHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
              A     ++   +++  N+++D Y + G +     +F KM ++NV+SW+ MI GYA  
Sbjct: 224 VNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXH 283

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
              KEA+++F++M   +  +P+  ++V  +SACS + AL  G+++H Y+  R  + +  +
Sbjct: 284 RDSKEALNLFRQM-LCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMK-RNRMLLDIV 341

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V  A+++MY+KCG    A  +FN +  ++ +SW+ +I GL MNG G++AL+ F  M +  
Sbjct: 342 VQTALVDMYLKCGSXDEARXIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFXQMEMER 401

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           +  DD+ F+ ++ ACSH  LV +GL +F  M  VY + P+++HY C+VD+ GRAG L++ 
Sbjct: 402 IPMDDLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQI 461

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
           +  I+ MP++   ++WG+LL ACRIH+N  + + + + L   K    G + LMSN +A  
Sbjct: 462 QNIIQSMPMKPNAALWGSLLLACRIHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADV 521

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
             WE   +IR  ++   +KK  G S IEV+ ++
Sbjct: 522 GMWEGMLRIRKLMKERKMKKDIGRSVIEVDGNV 554



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 170/359 (47%), Gaps = 28/359 (7%)

Query: 28  KALEIHAHVIEYGHLHDIFIQNSLLHFYVT-VKDIFSAHQIFNSVVFPDVVSWTTIISGL 86
           + L+IHA +I    + D F  + LL   V+   ++  A  +F  +  P+     T++   
Sbjct: 26  QILQIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFICNTMVKCY 85

Query: 87  SKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNI 143
           ++    + A+  +  +  K    +  T   VL AC ++     G  +   +++     ++
Sbjct: 86  TESSTPERALRFYAEMRKKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDV 145

Query: 144 ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
            + N ++  Y RCG       +F    ++++VSW +M+GGY   G  + A ++F EM + 
Sbjct: 146 FVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPER 205

Query: 204 KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR--YD-LSVSNLVG-NAVINMYVKC 259
                      +V+S   SI    +GK +      R  +D +   +LV  N++I+ Y K 
Sbjct: 206 -----------DVVSW--SIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKV 252

Query: 260 GDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALI 319
           G++ +A ++FB +  K+ ISWS +I G A +   ++AL LF  M+   + PD V+ +  +
Sbjct: 253 GEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPDRVSVVGAV 312

Query: 320 SACSHGGLVDQGL---ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP 375
           SACS  G +DQG    +  K    + +IV Q      +VDMY + G  +EA      MP
Sbjct: 313 SACSQLGALDQGRWIHLYMKRNRMLLDIVVQ----TALVDMYLKCGSXDEARXIFNSMP 367


>gi|356513796|ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 595

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 150/461 (32%), Positives = 264/461 (57%), Gaps = 14/461 (3%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML+     NHYTF   +K C+     ++ L+ HA ++++G   D+F +NSL+  Y     
Sbjct: 98  MLARSVPPNHYTFPLLIKVCTDIGSFREGLKGHARIVKFGFGSDLFARNSLIRMYSVFGR 157

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSS 120
           I +A  +F+   + D+VS+ ++I G  K G    A  +F   +  P+ + L     + + 
Sbjct: 158 IGNARMVFDESCWLDLVSYNSMIDGYVKNGEIGAARKVF---NEMPDRDVL-----SWNC 209

Query: 121 LVSH--KLGKAIHAHSL-RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK--RNVV 175
           L++    +G    A+ L   + E + +  N ++D   R G+++     F +MP   RNVV
Sbjct: 210 LIAGYVGVGDLDAANELFETIPERDAVSWNCMIDGCARVGNVSLAVKFFDRMPAAVRNVV 269

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           SW +++  +A      E + +F +M + +EA PNEATLV+VL+AC+++  LS G +VHS+
Sbjct: 270 SWNSVLALHARVKNYGECLMLFGKMVEGREAVPNEATLVSVLTACANLGKLSMGMWVHSF 329

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
           I +  ++    L+   ++ MY KCG + +A  VF+ +  +  +SW+++I G  ++G G +
Sbjct: 330 IRSN-NIKPDVLLLTCLLTMYAKCGAMDLAKGVFDEMPVRSVVSWNSMIMGYGLHGIGDK 388

Query: 296 ALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVV 355
           AL+LF  M      P+D TFI+++SAC+H G+V +G   F  M  VY+I P+++HY C+V
Sbjct: 389 ALELFLEMEKAGQQPNDATFISVLSACTHAGMVMEGWWYFDLMQRVYKIEPKVEHYGCMV 448

Query: 356 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVG 415
           D+  RAGL+E +E  IR +P++A  ++WGALL+ C  H + E+ + + +  +  +   +G
Sbjct: 449 DLLARAGLVENSEELIRMVPVKAGSAIWGALLSGCSNHLDSELGEIVAKRFIELEPQDIG 508

Query: 416 TFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
            + L+SN +A   RW+D   +R  I+  GL+K+   S + +
Sbjct: 509 PYILLSNMYAAKGRWDDVEHVRLMIKEKGLQKEAASSLVHL 549



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 155/336 (46%), Gaps = 23/336 (6%)

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-CGI---DVKPNANTLVSVLSACSSLV 122
           +F+ +  PD     TII   ++      A+  + C +    V PN  T   ++  C+ + 
Sbjct: 62  LFDHLHHPDAFHCNTIIRAYARKPDFPAALRFYYCKMLARSVPPNHYTFPLLIKVCTDIG 121

Query: 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182
           S + G   HA  ++    +++   N+++  Y   G + +   +F +    ++VS+ +MI 
Sbjct: 122 SFREGLKGHARIVKFGFGSDLFARNSLIRMYSVFGRIGNARMVFDESCWLDLVSYNSMID 181

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLV--NVLSACSSISALSFGKYVHSYISTRY 240
           GY + G    A  VF EM       P+   L    +++    +  L     +   I  R 
Sbjct: 182 GYVKNGEIGAARKVFNEM-------PDRDVLSWNCLIAGYVGVGDLDAANELFETIPERD 234

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNML--AYKDKISWSTVISGLAMNGCGRQALQ 298
            +S      N +I+   + G+V +A++ F+ +  A ++ +SW++V++  A      + L 
Sbjct: 235 AVS-----WNCMIDGCARVGNVSLAVKFFDRMPAAVRNVVSWNSVLALHARVKNYGECLM 289

Query: 299 LFSLMII-NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
           LF  M+      P++ T +++++AC++ G +  G+ +   + +   I P +    C++ M
Sbjct: 290 LFGKMVEGREAVPNEATLVSVLTACANLGKLSMGMWVHSFIRS-NNIKPDVLLLTCLLTM 348

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
           Y + G ++ A+    EMP+ +  S W +++    +H
Sbjct: 349 YAKCGAMDLAKGVFDEMPVRSVVS-WNSMIMGYGLH 383



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 114/275 (41%), Gaps = 18/275 (6%)

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCG 163
           V+     L + L +  +L  H+L + +    +  L+++ +   +AI        +     
Sbjct: 3   VRGKHEVLFAALESWKNL--HELNQVLSQLIVSGLSQHPLFATSAIKKLCSHSVTFPRAT 60

Query: 164 YLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI 223
           +LF  +   +     T+I  YA +     A+  +      +   PN  T   ++  C+ I
Sbjct: 61  FLFDHLHHPDAFHCNTIIRAYARKPDFPAALRFYYCKMLARSVPPNHYTFPLLIKVCTDI 120

Query: 224 SALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTV 283
            +   G   H+ I  ++         N++I MY   G +G A  VF+   + D +S++++
Sbjct: 121 GSFREGLKGHARI-VKFGFGSDLFARNSLIRMYSVFGRIGNARMVFDESCWLDLVSYNSM 179

Query: 284 ISGLAMNGCGRQALQLFSLMIINAVFPD-DVTFIALISACSHGGLVDQGLILFKAMSTVY 342
           I G   NG    A ++F+ M      PD DV    L   C   G V  G +   A + ++
Sbjct: 180 IDGYVKNGEIGAARKVFNEM------PDRDV----LSWNCLIAGYVGVGDL--DAANELF 227

Query: 343 EIVPQMQ--HYACVVDMYGRAGLLEEAEAFIREMP 375
           E +P+     + C++D   R G +  A  F   MP
Sbjct: 228 ETIPERDAVSWNCMIDGCARVGNVSLAVKFFDRMP 262


>gi|242096002|ref|XP_002438491.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
 gi|241916714|gb|EER89858.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
          Length = 794

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 144/472 (30%), Positives = 262/472 (55%), Gaps = 27/472 (5%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLH-DIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           TF  AL ACS         E+HA+V++   L  + F+ ++L+  Y + + + +A  +F+ 
Sbjct: 271 TFASALPACSQLEMLSLGREMHAYVLKDADLAANSFVASALVDMYASHERVGAARLVFDM 330

Query: 71  VVFPD--VVSWTTIISGLSKCGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLVSH 124
           V   +  +  W  +I G ++ G  ++A+++F  ++    V P+  T+  VL +C+   + 
Sbjct: 331 VPAGERQLGLWNAMICGYAQAGLDEDALELFARMETEAGVVPSETTIAGVLPSCARSETF 390

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
              +A+H + ++    +N  + NA++D Y R G + +  ++F  +  R+VVSW T+I G 
Sbjct: 391 AGKEAVHGYVVKRGMADNPFVQNALMDLYARLGDMDAARWIFATIEPRDVVSWNTLITGC 450

Query: 185 AERGFCKEAVSVFQEMEKT-----------------KEAEPNEATLVNVLSACSSISALS 227
             +G  ++A  + +EM++                  +   PN  TL+ +L  C+ ++A +
Sbjct: 451 VVQGHIRDAFQLVREMQQQGRFTDAATEDGIAGADEEPVVPNNITLMTLLPGCAMLAAPA 510

Query: 228 FGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGL 287
            GK +H Y + R+ L     VG+A+++MY KCG + ++  VF+ L  ++ I+W+ +I   
Sbjct: 511 RGKEIHGY-AVRHALDSDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNVITWNVLIMAY 569

Query: 288 AMNGCGRQALQLFSLMII-NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 346
            M+G G +A+ LF  M+  +   P++VTFIA ++ACSH G+VD+GL +F++M   + + P
Sbjct: 570 GMHGLGDEAIALFDRMVASDEAKPNEVTFIAALAACSHSGMVDRGLEMFRSMKRNHGVEP 629

Query: 347 QMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDEMFDRIRQD 405
               +AC VD+ GRAG L+EA   I  M P E + S W + L ACR+HRN  + +   + 
Sbjct: 630 TPDLHACAVDILGRAGRLDEAYRIISSMEPGEQQVSAWSSFLGACRLHRNVALGEIAAER 689

Query: 406 LVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           L   +      + L+ N ++ A  WE ++++R  +R+ G+ K+ GCSWIE++
Sbjct: 690 LFELEPDEASHYVLLCNIYSAAGLWEKSSEVRSRMRQRGVSKEPGCSWIELD 741



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 121/451 (26%), Positives = 211/451 (46%), Gaps = 48/451 (10%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIF------IQNSLLHFYVTVKD 60
           + + +    A K+ +          IH   +     HD+       + N+LL  Y    D
Sbjct: 54  TLDRFALPPAAKSAAALRSLTAVRSIHGAALR----HDLLDGPTPAVSNALLTAYARCGD 109

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHK--EAIDMFCGIDVKPN---ANTLVSVL 115
           + +A  +F+++   D V++ ++I+ L  C F +   A+D    + ++ +   + TLVSVL
Sbjct: 110 LTAALALFDAMPSRDAVTFNSLIAAL--CLFRRWLPALDALRDMLLEGHPLTSFTLVSVL 167

Query: 116 SACSSLVSH-KLGKAIHAHSLRN--LNENNIILDNAILDFYIRCGSLASCGYLF-----V 167
            ACS L    +LG+  HA +L+N  L+ +     NA+L  Y R G +     LF      
Sbjct: 168 LACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQTLFGSVGAT 227

Query: 168 KMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 227
            +P   VV+W TM+    + G C EA+ V  +M   +   P+  T  + L ACS +  LS
Sbjct: 228 DVPGGGVVTWNTMVSLLVQSGRCGEAIEVLYDM-VARGVRPDGVTFASALPACSQLEMLS 286

Query: 228 FGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI--SWSTVIS 285
            G+ +H+Y+    DL+ ++ V +A+++MY     VG A  VF+M+   ++    W+ +I 
Sbjct: 287 LGREMHAYVLKDADLAANSFVASALVDMYASHERVGAARLVFDMVPAGERQLGLWNAMIC 346

Query: 286 GLAMNGCGRQALQLFSLMIINA-VFPDDVTFIALISACSH-----GGLVDQGLILFKAMS 339
           G A  G    AL+LF+ M   A V P + T   ++ +C+      G     G ++ + M+
Sbjct: 347 GYAQAGLDEDALELFARMETEAGVVPSETTIAGVLPSCARSETFAGKEAVHGYVVKRGMA 406

Query: 340 TVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV-WGALLNACRIHRN-DE 397
                 P +Q+   ++D+Y R G ++ A        IE    V W  L+  C +  +  +
Sbjct: 407 D----NPFVQN--ALMDLYARLGDMDAARWIF--ATIEPRDVVSWNTLITGCVVQGHIRD 458

Query: 398 MFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
            F  +R+  + ++G    T A   +  AGAD
Sbjct: 459 AFQLVRE--MQQQGRF--TDAATEDGIAGAD 485



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 96/229 (41%), Gaps = 20/229 (8%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           P   N+ T    L  C++     +  EIH + + +    D+ + ++L+  Y     +  +
Sbjct: 488 PVVPNNITLMTLLPGCAMLAAPARGKEIHGYAVRHALDSDVAVGSALVDMYAKCGCLALS 547

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF----CGIDVKPNANTLVSVLSACSS 120
             +F+ +   +V++W  +I      G   EAI +F       + KPN  T ++ L+ACS 
Sbjct: 548 RAVFDRLPRRNVITWNVLIMAYGMHGLGDEAIALFDRMVASDEAKPNEVTFIAALAACSH 607

Query: 121 LVSHKLGKAIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMP--KRNVVSW 177
                 G  +     RN   E    L    +D   R G L     +   M   ++ V +W
Sbjct: 608 SGMVDRGLEMFRSMKRNHGVEPTPDLHACAVDILGRAGRLDEAYRIISSMEPGEQQVSAW 667

Query: 178 TTMIGGYAERGFCKEAVSV-FQEM--EKTKEAEPNEAT----LVNVLSA 219
           ++ +G       C+   +V   E+  E+  E EP+EA+    L N+ SA
Sbjct: 668 SSFLGA------CRLHRNVALGEIAAERLFELEPDEASHYVLLCNIYSA 710


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 139/418 (33%), Positives = 243/418 (58%), Gaps = 13/418 (3%)

Query: 45  IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF----- 99
           + + N+L+   +  K I  A  +F  +V  D ++WTT+++GL++ G   EA+D+F     
Sbjct: 212 VVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRA 271

Query: 100 --CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCG 157
              GID      T  S+L+AC +L + + GK IHA+  R   E+N+ + +A++D Y +C 
Sbjct: 272 EGVGID----QYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCR 327

Query: 158 SLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVL 217
           S+     +F +M  RN++SWT MI GY +    +EAV  F EM+     +P++ TL +V+
Sbjct: 328 SIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQ-MDGIKPDDFTLGSVI 386

Query: 218 SACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK 277
           S+C+++++L  G   H  ++    L     V NA++ +Y KCG +  A ++F+ +++ D+
Sbjct: 387 SSCANLASLEEGAQFHC-LALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ 445

Query: 278 ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKA 337
           +SW+ +++G A  G  ++ + LF  M+ N + PD VTFI ++SACS  GLV++G   F +
Sbjct: 446 VSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDS 505

Query: 338 MSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
           M   + IVP   HY C++D+Y R+G  +EAE FI++MP   +   W  LL++CR+  N E
Sbjct: 506 MQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNME 565

Query: 398 MFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
           +     ++L+     +  ++ L+ +  A   +W +   +R  +R   +KK+ GCSWI+
Sbjct: 566 IGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIK 623



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 197/402 (49%), Gaps = 42/402 (10%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI- 102
           ++F +N+LL      + +    ++F S+   D VS+  +I+G S  G    ++ ++  + 
Sbjct: 78  NLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALL 137

Query: 103 ---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR----------------------- 136
               V+P   TL +++   S+L    LG ++H   LR                       
Sbjct: 138 REESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLI 197

Query: 137 --------NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
                    +    +++ N ++   +RC  +     LF  M  R+ ++WTTM+ G  + G
Sbjct: 198 RDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNG 257

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS-TRYDLSVSNL 247
              EA+ VF+ M + +    ++ T  ++L+AC +++AL  GK +H+YI+ T Y+ +V   
Sbjct: 258 LQLEALDVFRRM-RAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNV--F 314

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           VG+A+++MY KC  + +A  VF  +  ++ ISW+ +I G   N C  +A++ FS M ++ 
Sbjct: 315 VGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDG 374

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           + PDD T  ++IS+C++   +++G   F  ++ V  ++  +     +V +YG+ G +E+A
Sbjct: 375 IKPDDFTLGSVISSCANLASLEEG-AQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDA 433

Query: 368 EAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDRIRQDLVN 408
                EM    + S W AL+    +  +  E  D   + L N
Sbjct: 434 HRLFDEMSFHDQVS-WTALVTGYAQFGKAKETIDLFEKMLAN 474



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 142/287 (49%), Gaps = 5/287 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YTF   L AC      ++  +IHA++    +  ++F+ ++L+  Y   + I  A  +F
Sbjct: 277 DQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVF 336

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +   +++SWT +I G  +    +EA+  F  +    +KP+  TL SV+S+C++L S +
Sbjct: 337 RRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLE 396

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G   H  +L +     I + NA++  Y +CGS+     LF +M   + VSWT ++ GYA
Sbjct: 397 EGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYA 456

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G  KE + +F++M      +P+  T + VLSACS    +  G      +   + +   
Sbjct: 457 QFGKAKETIDLFEKM-LANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPI 515

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDKISWSTVISGLAMNG 291
           +     +I++Y + G    A +    + +  D   W+T++S   + G
Sbjct: 516 DDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRG 562


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 146/444 (32%), Positives = 260/444 (58%), Gaps = 7/444 (1%)

Query: 23  AHPHQKALEIHAHVIEYG-HLHDIFIQNSLLHFYVTVKDIFS-AHQIFNSVVFPDVVSWT 80
           A    K  +IHA  I +G  L++  +   L+   V++    S A+ +F  +  P+V +W 
Sbjct: 28  ASSKHKLKQIHAFSIRHGVSLNNPDMGKHLIFTIVSLSAPMSYAYNVFTVIHNPNVFTWN 87

Query: 81  TIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRN 137
           TII G ++      A   +  + V   +P+ +T   +L A S  ++ + G+AIH+ ++RN
Sbjct: 88  TIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRN 147

Query: 138 LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVF 197
             E+ + + N++L  Y  CG   S   +F  M +R++V+W +MI G+A  G   EA+++F
Sbjct: 148 GFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPNEALTLF 207

Query: 198 QEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYV 257
           +EM   +  EP+  T+V++LSA + + AL  G+ VH Y+  +  LS ++ V N+++++Y 
Sbjct: 208 REM-SVEGVEPDGFTVVSLLSASAELGALELGRRVHVYL-LKVGLSKNSHVTNSLLDLYA 265

Query: 258 KCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIA 317
           KCG +  A +VF+ ++ ++ +SW+++I GLA+NG G +AL+LF  M    + P ++TF+ 
Sbjct: 266 KCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVG 325

Query: 318 LISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIE 377
           ++ ACSH G++D+G   F+ M     I+P+++HY C+VD+  RAGL+++A  +I+ MP++
Sbjct: 326 VLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQ 385

Query: 378 AEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIR 437
               +W  LL AC IH +  + +  R  L+N +    G + L+SN +A   RW D   IR
Sbjct: 386 PNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPKHSGDYVLLSNLYASERRWSDVQVIR 445

Query: 438 DEIRRMGLKKKTGCSWIEVNPSIF 461
             + + G+KK  G S +E+   ++
Sbjct: 446 RSMLKDGVKKTPGYSLVELGNRVY 469



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 156/295 (52%), Gaps = 6/295 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ++SC     H T+   LKA S +   ++   IH+  I  G    +F+QNSLLH Y    D
Sbjct: 110 VVSCVEPDTH-TYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGD 168

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
             SA+++F  +   D+V+W ++I+G +  G   EA+ +F  +    V+P+  T+VS+LSA
Sbjct: 169 TESAYKVFELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSA 228

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
            + L + +LG+ +H + L+     N  + N++LD Y +CG++     +F +M +RN VSW
Sbjct: 229 SAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSW 288

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
           T++I G A  GF +EA+ +F+EME  +   P+E T V VL ACS    L  G      + 
Sbjct: 289 TSLIVGLAVNGFGEEALELFKEMEG-QGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMK 347

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDKISWSTVISGLAMNG 291
               +         ++++  + G V  A + + NM    + + W T++    ++G
Sbjct: 348 EECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHG 402


>gi|356528513|ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 651

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 144/437 (32%), Positives = 253/437 (57%), Gaps = 9/437 (2%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV--VFPDVVSWTTIISGLSKC 89
           +++  I  G   D+ + N+L+  Y    ++ SA  +F+ +      VVSW ++I+  +  
Sbjct: 176 VYSFGIRIGVHMDVSVANTLIAAYSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANF 235

Query: 90  GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
             H +A++ + G+      P+ +T++++LS+C    +   G  +H+H ++   ++++ + 
Sbjct: 236 EKHVKAVNCYKGMLDGGFSPDISTILNLLSSCMQPKALFHGLLVHSHGVKLGCDSDVCVV 295

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
           N ++  Y +CG + S  +LF  M  +  VSWT MI  YAE+G+  EA+++F  ME   E 
Sbjct: 296 NTLICMYSKCGDVHSARFLFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGE- 354

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
           +P+  T++ ++S C    AL  GK++ +Y S    L  + +V NA+I+MY KCG    A 
Sbjct: 355 KPDLVTVLALISGCGQTGALELGKWIDNY-SINNGLKDNVVVCNALIDMYAKCGGFNDAK 413

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
           ++F  +A +  +SW+T+I+  A+NG  + AL+LF +M+   + P+ +TF+A++ AC+HGG
Sbjct: 414 ELFYTMANRTVVSWTTMITACALNGDVKDALELFFMMLEMGMKPNHITFLAVLQACAHGG 473

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 386
           LV++GL  F  M+  Y I P + HY+C+VD+ GR G L EA   I+ MP E +  +W AL
Sbjct: 474 LVERGLECFNMMTQKYGINPGIDHYSCMVDLLGRKGHLREALEIIKSMPFEPDSGIWSAL 533

Query: 387 LNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446
           L+AC++H   EM   + + L   +      +  M+N +A A+ WE    IR  ++ + ++
Sbjct: 534 LSACKLHGKMEMGKYVSEQLFELEPQVAVPYVEMANIYASAEMWEGVAAIRRNMKYLQVR 593

Query: 447 KKTGCSWIEVN--PSIF 461
           K  G S I+VN  P+IF
Sbjct: 594 KSPGQSIIQVNGKPTIF 610



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 114/395 (28%), Positives = 195/395 (49%), Gaps = 19/395 (4%)

Query: 9   NHYTFTQALKACS-LAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
           N+ TF   LKAC+ L+H     + IHAHV++     +IF+Q + +  YV    +  AH +
Sbjct: 52  NNSTFPFVLKACAKLSHLRNSQI-IHAHVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNV 110

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSH 124
           F  +   D+ SW  ++ G ++ GF      +   +    ++P+A T++ ++ +   + S 
Sbjct: 111 FVEMPVRDIASWNAMLLGFAQSGFLDRLSCLLRHMRLSGIRPDAVTVLLLIDSILRVKSL 170

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK--RNVVSWTTMIG 182
               A+++  +R     ++ + N ++  Y +CG+L S   LF ++    R+VVSW +MI 
Sbjct: 171 TSLGAVYSFGIRIGVHMDVSVANTLIAAYSKCGNLCSAETLFDEINSGLRSVVSWNSMIA 230

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242
            YA      +AV+ ++ M     + P+ +T++N+LS+C    AL  G  VHS+   +   
Sbjct: 231 AYANFEKHVKAVNCYKGMLDGGFS-PDISTILNLLSSCMQPKALFHGLLVHSH-GVKLGC 288

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
                V N +I MY KCGDV  A  +FN ++ K  +SW+ +IS  A  G   +A+ LF+ 
Sbjct: 289 DSDVCVVNTLICMYSKCGDVHSARFLFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNA 348

Query: 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV----VDMY 358
           M      PD VT +ALIS C   G ++ G  +       Y I   ++    V    +DMY
Sbjct: 349 MEAAGEKPDLVTVLALISGCGQTGALELGKWIDN-----YSINNGLKDNVVVCNALIDMY 403

Query: 359 GRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
            + G   +A+     M      S W  ++ AC ++
Sbjct: 404 AKCGGFNDAKELFYTMANRTVVS-WTTMITACALN 437



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 172/372 (46%), Gaps = 52/372 (13%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L +C         L +H+H ++ G   D+ + N+L+  Y    D+ SA  +FN +
Sbjct: 259 TILNLLSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSARFLFNGM 318

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHKLGK 128
                VSWT +IS  ++ G+  EA+ +F  ++    KP+  T+++++S C    + +LGK
Sbjct: 319 SDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQTGALELGK 378

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            I  +S+ N  ++N+++ NA++D Y +CG       LF  M  R VVSWTTMI   A  G
Sbjct: 379 WIDNYSINNGLKDNVVVCNALIDMYAKCGGFNDAKELFYTMANRTVVSWTTMITACALNG 438

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
             K+A+ +F  M +    +PN  T + VL AC+           H  +  R         
Sbjct: 439 DVKDALELFFMMLEMG-MKPNHITFLAVLQACA-----------HGGLVER--------- 477

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKIS-----WSTVISGLAMNGCGRQALQLFSLM 303
                            ++ FNM+  K  I+     +S ++  L   G  R+AL++   M
Sbjct: 478 ----------------GLECFNMMTQKYGINPGIDHYSCMVDLLGRKGHLREALEIIKSM 521

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQ-HYACVVDMYGRAG 362
                 PD   + AL+SAC   G ++ G  + + +   +E+ PQ+   Y  + ++Y  A 
Sbjct: 522 PFE---PDSGIWSALLSACKLHGKMEMGKYVSEQL---FELEPQVAVPYVEMANIYASAE 575

Query: 363 LLEEAEAFIREM 374
           + E   A  R M
Sbjct: 576 MWEGVAAIRRNM 587



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 136/270 (50%), Gaps = 13/270 (4%)

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKA 129
           F  + +W +    L   G  + A+ +F  +    + PN +T   VL AC+ L   +  + 
Sbjct: 15  FSTLFTWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQI 74

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           IHAH L++  ++NI +  A +D Y++CG L     +FV+MP R++ SW  M+ G+A+ GF
Sbjct: 75  IHAHVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGF 134

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY---ISTRYDLSVSN 246
                 + + M +     P+  T++ ++ +   + +L+    V+S+   I    D+SV+ 
Sbjct: 135 LDRLSCLLRHM-RLSGIRPDAVTVLLLIDSILRVKSLTSLGAVYSFGIRIGVHMDVSVA- 192

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNML--AYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
              N +I  Y KCG++  A  +F+ +    +  +SW+++I+  A      +A+  +  M+
Sbjct: 193 ---NTLIAAYSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGML 249

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLIL 334
                PD  T + L+S+C     +  GL++
Sbjct: 250 DGGFSPDISTILNLLSSCMQPKALFHGLLV 279


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 147/464 (31%), Positives = 258/464 (55%), Gaps = 7/464 (1%)

Query: 1   MLSCPSSYNHYTFTQALKACS-LAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK 59
           +L C    +HYT T  LKA S L      + +IH H I+  ++ D F+  +L+  Y   +
Sbjct: 414 LLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNR 473

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN---TLVSVLS 116
            +  A  +F    F D+V+W  ++SG ++     + +++F  +  +   +   TL +VL 
Sbjct: 474 CMKEAEVLFGRNNF-DLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLK 532

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
            C  L +   GK +HA+++++  + ++ + + ILD Y++CG +++  + F  +P  + V+
Sbjct: 533 TCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVA 592

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           WTT+I G  E G  + A+ VF +M +     P+E T+  +  A S ++AL  G+ +H+  
Sbjct: 593 WTTLISGCIENGEEERALHVFSQM-RLMGVLPDEFTIATLAKASSCLTALEQGRQIHAN- 650

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296
           + + + +    VG ++++MY KCG +  A  +F  +   +  +W+ ++ GLA +G G++A
Sbjct: 651 ALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEA 710

Query: 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356
           LQLF  M    + PD VTFI ++SACSH GLV +     ++M   Y I P+++HY+C+ D
Sbjct: 711 LQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLAD 770

Query: 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGT 416
             GRAGL++EAE  I  M +EA  S++  LL ACR+  + E   R+   L+  + +    
Sbjct: 771 ALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSA 830

Query: 417 FALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           + L+SN +A A +W++    R  ++   +KK  G SWIEV   I
Sbjct: 831 YVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKI 874



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 189/368 (51%), Gaps = 23/368 (6%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90
           ++H   ++ G    + + NSL++ Y  ++ I  A  +FN++   D++SW ++I+G+++  
Sbjct: 343 QVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSD 402

Query: 91  FHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLVSH-KLGKAIHAHSLRNLNENNII 144
              EA+ +F     CG+  KP+  T+ SVL A SSL     L K IH H+++  N  +  
Sbjct: 403 LEVEAVCLFMQLLRCGL--KPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSF 460

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           +  A++D Y R   +     LF +    ++V+W  M+ GY +     + + +F  M K  
Sbjct: 461 VSTALIDAYSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQG 519

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVG 263
           E   ++ TL  VL  C  + A++ GK VH+Y I + YDL +   V + +++MYVKCGD+ 
Sbjct: 520 E-RSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDL--WVSSGILDMYVKCGDMS 576

Query: 264 IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
            A   F+ +   D ++W+T+ISG   NG   +AL +FS M +  V PD+ T   L  A S
Sbjct: 577 AAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASS 636

Query: 324 HGGLVDQGLIL----FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAE 379
               ++QG  +     K   T    V        +VDMY + G +++A    + + +   
Sbjct: 637 CLTALEQGRQIHANALKLNCTSDPFVG-----TSLVDMYAKCGSIDDAYCLFKRIEM-MN 690

Query: 380 WSVWGALL 387
            + W A+L
Sbjct: 691 ITAWNAML 698



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 183/421 (43%), Gaps = 56/421 (13%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T +  LK C  +     +   H +  + G   D F+  +L++ Y+    +     +F  +
Sbjct: 154 TLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEM 213

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDM---FCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
            + DVV W  ++    + GF +EAID+   F    + PN  TL  +     S +S    +
Sbjct: 214 PYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLL-----SRISGDDSE 268

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
           A    S  N N+ + +                             ++S   ++ GY   G
Sbjct: 269 AGQVKSFENGNDASAV---------------------------SEIISRNKILSGYLHAG 301

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
                +  F +M ++ + E ++ T + VL+    + +L+ G+ VH  ++ +  L +   V
Sbjct: 302 QYSALLKCFMDMVES-DLECDQVTFILVLATAVRLDSLALGQQVHC-MALKLGLDLMLTV 359

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            N++INMY K   +G+A  VFN ++ +D ISW++VI+G+A +    +A+ LF  ++   +
Sbjct: 360 SNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGL 419

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI----VPQMQHYACVVDMYGRAGLL 364
            PD  T  +++ A S    + +GL L K +  V+ I    V        ++D Y R   +
Sbjct: 420 KPDHYTMTSVLKAASS---LPEGLSLSKQIH-VHAIKTNNVADSFVSTALIDAYSRNRCM 475

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRI----HRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           +EAE          +   W A+++        H+  E+F      L++K+G     F L 
Sbjct: 476 KEAEVLFGRNNF--DLVAWNAMMSGYTQSHDGHKTLELF-----ALMHKQGERSDDFTLA 528

Query: 421 S 421
           +
Sbjct: 529 T 529



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 176/364 (48%), Gaps = 15/364 (4%)

Query: 75  DVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIH 131
           +++S   I+SG    G +   +  F  +   D++ +  T + VL+    L S  LG+ +H
Sbjct: 286 EIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVH 345

Query: 132 AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
             +L+   +  + + N++++ Y +   +     +F  M +R+++SW ++I G A+     
Sbjct: 346 CMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEV 405

Query: 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSI-SALSFGKYVHSYISTRYDLSVSNLVGN 250
           EAV +F ++ +    +P+  T+ +VL A SS+   LS  K +H + + + +    + V  
Sbjct: 406 EAVCLFMQLLRCG-LKPDHYTMTSVLKAASSLPEGLSLSKQIHVH-AIKTNNVADSFVST 463

Query: 251 AVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP 310
           A+I+ Y +   +  A  +F    + D ++W+ ++SG   +  G + L+LF+LM       
Sbjct: 464 ALIDAYSRNRCMKEAEVLFGRNNF-DLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERS 522

Query: 311 DDVTFIALISACSHGGLVDQGLILFK-AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEA 369
           DD T   ++  C     ++QG  +   A+ + Y++   +   + ++DMY + G +  A+ 
Sbjct: 523 DDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDL--DLWVSSGILDMYVKCGDMSAAQF 580

Query: 370 FIREMPIEAEWSVWGALLNACRIHRNDE----MFDRIRQDLVNKKGVSVGTFALMSNTFA 425
               +P+  + + W  L++ C  +  +E    +F ++R   V     ++ T A  S+   
Sbjct: 581 AFDSIPVPDDVA-WTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLT 639

Query: 426 GADR 429
             ++
Sbjct: 640 ALEQ 643



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 7/195 (3%)

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LGK  HA  L         L N ++  Y +CGSL     +F KMP+R++VSW +++  YA
Sbjct: 64  LGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYA 123

Query: 186 ERGF-----CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           +         KEA  +F+ + +      +  TL  +L  C     +   +  H Y + + 
Sbjct: 124 QSSEGVVENVKEAFLLFRIL-RQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGY-ACKI 181

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
            L   + V  A++N+Y+K G V     +F  + Y+D + W+ ++      G   +A+ L 
Sbjct: 182 GLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLS 241

Query: 301 SLMIINAVFPDDVTF 315
           S    + + P+++T 
Sbjct: 242 SAFHTSGLHPNEITL 256



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 112/246 (45%), Gaps = 13/246 (5%)

Query: 33  HAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFH 92
           HA ++      + F+ N+L+  Y     +  A ++F+ +   D+VSW +I++  ++    
Sbjct: 69  HARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEG 128

Query: 93  -----KEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
                KEA  +F  +    V  +  TL  +L  C         ++ H ++ +   + +  
Sbjct: 129 VVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDF 188

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           +  A+++ Y++ G +     LF +MP R+VV W  M+  Y E GF +EA+ +      T 
Sbjct: 189 VAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFH-TS 247

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVG 263
              PNE TL  +LS  S     S    V S+ +     +VS ++  N +++ Y+  G   
Sbjct: 248 GLHPNEITL-RLLSRISGDD--SEAGQVKSFENGNDASAVSEIISRNKILSGYLHAGQYS 304

Query: 264 IAIQVF 269
             ++ F
Sbjct: 305 ALLKCF 310


>gi|255542116|ref|XP_002512122.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549302|gb|EEF50791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 800

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 147/466 (31%), Positives = 267/466 (57%), Gaps = 11/466 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    + N  T    L +C+  +  ++   +H + +++  L D  +  +L+ +Y     
Sbjct: 292 MLEFKVAPNAVTIMAVLSSCAGFNLLREGKSVHCYAVKHIDLDDDSLGPALIEYYAQFGK 351

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSA 117
           +    ++ +++   +++SW  +IS  +  G  KEA+ +F  +  +   P++ +L S +SA
Sbjct: 352 LSYCEKVLHTIGKRNIISWNMLISVYASQGLFKEALGIFVQMQRQGQIPDSFSLSSSISA 411

Query: 118 CSSLVSHKLGKAIHAHSLRN--LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVV 175
           C+++    LG  IH ++++   L+E    + N+++D Y +CG +     +F ++  ++VV
Sbjct: 412 CANVGLLWLGHQIHGYAIKRHILDE---FVQNSLIDMYSKCGHVDLAYLIFDRIQSKSVV 468

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           +W +MI G+++ G   EA+ +F +M      + NE T +  + ACS +  L  GK++H  
Sbjct: 469 AWNSMICGFSQIGNSLEAIRLFDQM-YLNCLDMNEVTFLTAIQACSHMGHLEKGKWLHHK 527

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
           +   Y +     +  A+I+MY KCGD+ IA +VF+ ++ +  +SWS +I G  M+G    
Sbjct: 528 L-IAYGVKKDLFIDTALIDMYAKCGDLRIAHRVFDSMSERSVVSWSAMIGGCGMHGDIDA 586

Query: 296 ALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVV 355
           A+ LF+ MI   + P+D+TF+ ++SACSH G V++G   F +M   +E+ P ++H+AC+V
Sbjct: 587 AISLFAEMIQREMKPNDITFMNILSACSHSGYVEEGKFYFNSMKN-FEVEPNLEHFACMV 645

Query: 356 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVG 415
           D+  RAG L+EA   I  MP  AE S+WGALLN CRIH+  +M   I +DL++ +    G
Sbjct: 646 DLLSRAGDLDEAYRIINSMPFPAEASIWGALLNGCRIHQRMDMIRNIERDLLDMRTDDTG 705

Query: 416 TFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
            + L+SN +A    W+ + K+R  ++ +GLKK  G S IE++  ++
Sbjct: 706 YYTLLSNIYAEEGNWDVSRKVRSAMKGIGLKKVPGYSTIELDKKVY 751



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/321 (32%), Positives = 171/321 (53%), Gaps = 5/321 (1%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           + F+  L+AC+         E+H  +I+YG   D  ++ SLL  Y  +  + +A ++F++
Sbjct: 100 FIFSSVLRACAGFGNLDVGEEVHGRIIKYGLDVDHVVETSLLGMYGDLGCLSNAKKVFDN 159

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLG 127
           +   D+VSW++IIS     G   E ++MF      DV+ ++ T++S+  AC  L   +L 
Sbjct: 160 MTTRDLVSWSSIISCYVDNGESSEGLEMFRLLVSQDVELDSVTMLSIAGACGELGFLRLA 219

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           K++H   +R   E    L++A++  Y RC   +S   +F  M  R++ SWT MI  Y   
Sbjct: 220 KSVHGCIIRQRIETRGPLNDALVLMYSRCDDFSSAERIFSNMFNRSIASWTAMISCYNRS 279

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
            + K+A+ VF EM + K A PN  T++ VLS+C+  + L  GK VH Y     DL   +L
Sbjct: 280 RWFKQALQVFVEMLEFKVA-PNAVTIMAVLSSCAGFNLLREGKSVHCYAVKHIDLDDDSL 338

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
            G A+I  Y + G +    +V + +  ++ ISW+ +IS  A  G  ++AL +F  M    
Sbjct: 339 -GPALIEYYAQFGKLSYCEKVLHTIGKRNIISWNMLISVYASQGLFKEALGIFVQMQRQG 397

Query: 308 VFPDDVTFIALISACSHGGLV 328
             PD  +  + ISAC++ GL+
Sbjct: 398 QIPDSFSLSSSISACANVGLL 418



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 155/303 (51%), Gaps = 5/303 (1%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           +H+H++  G  HD      L+  Y  +  + S+  +F +   PD   W  +I       F
Sbjct: 20  LHSHLLVTGLHHDPQASTKLIESYSQIGCLQSSKLVFETFQNPDSFMWAVLIKCHVWSNF 79

Query: 92  HKEAIDMFCGIDVK--PNANTLV-SVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148
             EAI ++  +  K  P ++ +  SVL AC+   +  +G+ +H   ++   + + +++ +
Sbjct: 80  CGEAISLYNKMIYKQIPISDFIFSSVLRACAGFGNLDVGEEVHGRIIKYGLDVDHVVETS 139

Query: 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEP 208
           +L  Y   G L++   +F  M  R++VSW+++I  Y + G   E + +F+ +  +++ E 
Sbjct: 140 LLGMYGDLGCLSNAKKVFDNMTTRDLVSWSSIISCYVDNGESSEGLEMFR-LLVSQDVEL 198

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           +  T++++  AC  +  L   K VH  I  R  +     + +A++ MY +C D   A ++
Sbjct: 199 DSVTMLSIAGACGELGFLRLAKSVHGCI-IRQRIETRGPLNDALVLMYSRCDDFSSAERI 257

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F+ +  +   SW+ +IS    +   +QALQ+F  M+   V P+ VT +A++S+C+   L+
Sbjct: 258 FSNMFNRSIASWTAMISCYNRSRWFKQALQVFVEMLEFKVAPNAVTIMAVLSSCAGFNLL 317

Query: 329 DQG 331
            +G
Sbjct: 318 REG 320


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 152/456 (33%), Positives = 236/456 (51%), Gaps = 39/456 (8%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +HYT+  ALK+C+         +IH+     G   ++F+ +S +  Y        A+Q+F
Sbjct: 121 DHYTYPLALKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMF 180

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV----KPNANTLVSVLSACSSLVSH 124
             + + DVVSW  +ISG +  G    A+D+F  +      KP+A T+ S+L +       
Sbjct: 181 EEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPS------- 233

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
            +GKA                         R   +A    +F +M  + ++SW  M+  Y
Sbjct: 234 -MGKA-------------------------RVEDIALLKGVFDEMRFKGLISWNAMLAVY 267

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
                  EAV +F  M+K    EP+  TL  VL +C  +SALS GK +H  I  R  +  
Sbjct: 268 TNNEMHVEAVELFMRMQKDG-IEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRR-MCS 325

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           S L+ NA+++MY  CG +  A  VF+ +  +D +SW+++IS    +G GR+A+ LF  M 
Sbjct: 326 SMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMC 385

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
              + PD + F+A+++ACSH GL+D G   F +M++ + I P+++HYAC+VD+ GRAG +
Sbjct: 386 GQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCI 445

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
            EA  FI  MPI+    VWGALL ACRIH N ++       L+       G + L+SN +
Sbjct: 446 REAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIY 505

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           A A RW D + +R  +   G+KK  G S  E+   +
Sbjct: 506 ARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRV 541



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 133/308 (43%), Gaps = 42/308 (13%)

Query: 74  PD--VVSWTTIISGLSKCGFHKEAIDMFCGIDVK-----PNANTLVSVLSACSSLVSHKL 126
           PD   V +  ++ GL+    H++A+ +F  +  +     P+  T    L +C++     L
Sbjct: 81  PDRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAATDGLVL 140

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           G+ IH+ + R   + N+ + ++ +  Y RCG       +F +M  R+VVSW  MI G+A 
Sbjct: 141 GRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAH 200

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
            G    A+ VF+E+   +  +P+  T+ ++L         S GK                
Sbjct: 201 AGLFGRAMDVFRELVALQCPKPDAGTMASILP--------SMGK---------------- 236

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
                      +  D+ +   VF+ + +K  ISW+ +++    N    +A++LF  M  +
Sbjct: 237 ----------ARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKD 286

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
            + PD VT   ++ +C     +  G  + + +     +   M     ++DMY   G L+E
Sbjct: 287 GIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKR-RRMCSSMLLENALMDMYANCGCLKE 345

Query: 367 AEAFIREM 374
           A      M
Sbjct: 346 ARDVFDSM 353


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 145/382 (37%), Positives = 219/382 (57%), Gaps = 35/382 (9%)

Query: 110 TLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC------- 162
           TL  VL +C+ L    +G+ +H   LR   E +  +  +++D Y++CG +          
Sbjct: 109 TLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKM 168

Query: 163 -------------GY-----------LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQ 198
                        GY           LF +M  RN+VSWT MI GY + GF ++A+ +F 
Sbjct: 169 IVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFD 228

Query: 199 EM-EKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYV 257
           EM +   E +PN  T+V+VL AC+  +AL  G+ +H + +    L +++ V  A+  MY 
Sbjct: 229 EMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDF-ANGIGLHLNSSVQTALAGMYA 287

Query: 258 KCGDVGIAIQVFNMLAYKDK--ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTF 315
           KC  +  A   F+M+A   K  I+W+T+I+  A +GCG +A+ +F  M+   V PD VTF
Sbjct: 288 KCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTF 347

Query: 316 IALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP 375
           + L+S CSH GL+D GL  F  M T++ + P+++HYACVVD+ GRAG L EA+  I +MP
Sbjct: 348 MGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMP 407

Query: 376 IEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNK 435
           ++A  SVWGALL ACR HRN E+ +   + L   +  + G + L+SN +A A  WE+  K
Sbjct: 408 MQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKK 467

Query: 436 IRDEIRRMGLKKKTGCSWIEVN 457
           +R  ++  G+KK  GCSWIE+N
Sbjct: 468 LRALLKYQGMKKSPGCSWIEIN 489



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 101/187 (54%), Gaps = 8/187 (4%)

Query: 42  LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-- 99
           + D+   N+L+  Y+   +I  A  +F  +   ++VSWT +ISG ++ GF ++A+ +F  
Sbjct: 170 VRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDE 229

Query: 100 ---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRC 156
               G ++KPN  T+VSVL AC+   + + G+ IH  +       N  +  A+   Y +C
Sbjct: 230 MLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKC 289

Query: 157 GSL--ASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
            SL  A C +  +    +N+++W TMI  YA  G   EAVS+F+ M +    +P+  T +
Sbjct: 290 YSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAG-VQPDAVTFM 348

Query: 215 NVLSACS 221
            +LS CS
Sbjct: 349 GLLSGCS 355


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 144/439 (32%), Positives = 241/439 (54%), Gaps = 11/439 (2%)

Query: 28  KALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS 87
           +  EIH +    G L ++ +  +++  Y     +  A   F  + + + V+W  +++   
Sbjct: 49  QGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYK 108

Query: 88  KCGFHKEAIDMFCGI-----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNE-- 140
             G  +EA+++F  +       +P+  +    + ACS+L   + G+ IH    R   E  
Sbjct: 109 LDGRDREALELFREMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELH 168

Query: 141 NNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIGGYAERGFCKEAVSVFQE 199
            ++++  A+L+ Y +CG L     +F  +    + V W  MI  YA+ G  K+A+ +++ 
Sbjct: 169 KDVVVGTALLNMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRS 228

Query: 200 MEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSVSNLVGNAVINMYVK 258
           M  T +  P + T V V+  C+ +SAL  G+ +H+ + +T +D ++  LV NA+++MY K
Sbjct: 229 MHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANL--LVSNALVHMYGK 286

Query: 259 CGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIAL 318
           CG +  A+ VF+ +  KD+ISW+T+IS  A +G   QAL L+  M +  V P +VTF+ L
Sbjct: 287 CGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGL 346

Query: 319 ISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEA 378
           +SACSHGGLV  GL  F  M   + I P + H+ C++D+ GR G L EAE  ++ MPI+A
Sbjct: 347 LSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQA 406

Query: 379 EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRD 438
               W +LL AC+ H + +   R    +V++   + G + L+SN +A A RW+D  KIR 
Sbjct: 407 NAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRK 466

Query: 439 EIRRMGLKKKTGCSWIEVN 457
            +   G+KK  G SWIE+ 
Sbjct: 467 IMAARGVKKSPGKSWIEIG 485



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 174/374 (46%), Gaps = 46/374 (12%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYG-HLH-DIFIQNSLLHFYVTVKDIFSAHQ 66
           + ++F+ A++ACS     ++  EIH  +   G  LH D+ +  +LL+ Y    D+  A +
Sbjct: 133 DKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEEARK 192

Query: 67  IFNSVVF-PDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSL 121
           +F+S+    D V W  +I+  ++ G  K+A+D++  +    D+ P   T V+V+  C+ L
Sbjct: 193 VFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAEL 252

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
            + K G+AIHA       + N+++ NA++  Y +CG L     +F  M  ++ +SW T+I
Sbjct: 253 SALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTII 312

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
             YA  G   +A+ ++QEM+  +  +P E T V +LSACS                    
Sbjct: 313 SSYAYHGHSDQALLLYQEMD-LQGVKPTEVTFVGLLSACSH------------------- 352

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
                LV + +   Y    D  I   V +         +  +I  L   G   +A  +  
Sbjct: 353 ---GGLVADGLDYFYRMQDDHRIKPSVPH---------FGCIIDLLGRGGRLAEAELVLK 400

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQ-HYACVVDMYGR 360
            M I A   + V +++L+ AC   G + +G+   +A   V + VP     Y  + ++Y  
Sbjct: 401 SMPIQA---NAVQWMSLLGACKTHGDLKRGV---RAADQVVDRVPWTSGGYVLLSNIYAA 454

Query: 361 AGLLEEAEAFIREM 374
           AG  ++ E   + M
Sbjct: 455 AGRWKDVEKIRKIM 468



 Score = 45.4 bits (106), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 23/174 (13%)

Query: 284 ISGLAMNGCGRQALQLFSLMIINAVFPDDVTF--IALISACSHGGLVDQGLILFKAMSTV 341
           ++  + NGC  +AL  F  M  +   PD VTF  I    A      +DQG  + +  + +
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHR-YARI 59

Query: 342 YEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS---VWGALLNACRIHRND-- 396
             ++P +     V+ MYG+ G L++A A   E+    +W     W A++   ++   D  
Sbjct: 60  SGLLPNVVVGTAVISMYGKCGRLDDARAAFEEL----QWKNSVTWNAMMTNYKLDGRDRE 115

Query: 397 ------EMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444
                 EM +R R    +K      +F++     +  +  E   +I + +RR G
Sbjct: 116 ALELFREMCERSRSARPDKF-----SFSIAIEACSNLEDLEQGREIHEMLRREG 164


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 152/451 (33%), Positives = 254/451 (56%), Gaps = 36/451 (7%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID 103
           ++   NS++  +    ++  A ++FN +   D+VSW+ +IS   +   ++EA+ +F  ++
Sbjct: 222 NVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMN 281

Query: 104 ---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFY------- 153
              +  +   ++SVLSACS L+    GK +H   ++   E  + L NA++  Y       
Sbjct: 282 ANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVV 341

Query: 154 ------------------------IRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
                                   ++CG +     LF  MP ++ VSW+ MI GYA++  
Sbjct: 342 TAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDR 401

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
             E + +FQEM+  +  +P+E  LV+V+SAC+ ++AL  GK++H+YI  +  L ++ ++G
Sbjct: 402 FTETLVLFQEMQ-IEGTKPDETILVSVISACTHLAALDQGKWIHAYIR-KNGLKINIILG 459

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
             +INMY+K G V  A++VF  L  K   +W+ +I GLAMNG   ++L+ FS M  + V 
Sbjct: 460 TTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVT 519

Query: 310 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEA 369
           P+++TF+A++ AC H GLVD+G   F +M   ++I P ++HY C+VD+ GRAG+L+EAE 
Sbjct: 520 PNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEE 579

Query: 370 FIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADR 429
            I  MP+  + S WGALL AC+ + ++E  +RI + LV       G   L+SN +A    
Sbjct: 580 LIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGN 639

Query: 430 WEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           W D  ++R  +R+ G+ K  GCS IE +  +
Sbjct: 640 WVDVLEVRGMMRQHGVVKTPGCSMIEAHGRV 670



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 104/417 (24%), Positives = 192/417 (46%), Gaps = 69/417 (16%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    + ++YT+    ++CS+         I  HV++ G   D++IQN+L++ Y    +
Sbjct: 117 MLESNVAADNYTYPILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGN 176

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSS 120
           +  A ++F+     D+VSW ++++G    G  +EA D++   D  P              
Sbjct: 177 LSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVY---DRMP-------------- 219

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
                              E N+I  N+++  + + G++     LF +M ++++VSW+ +
Sbjct: 220 -------------------ERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSAL 260

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH------- 233
           I  Y +    +EA+ +F+EM        +E  +++VLSACS +  +  GK VH       
Sbjct: 261 ISCYEQNEMYEEALILFKEM-NANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVG 319

Query: 234 --SYISTRYDL---------------------SVSNLVGNAVINMYVKCGDVGIAIQVFN 270
             +Y++ +  L                      +  +  N++I+ YVKCG++  A  +F+
Sbjct: 320 IETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFD 379

Query: 271 MLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQ 330
            +  KD +SWS +ISG A      + L LF  M I    PD+   +++ISAC+H   +DQ
Sbjct: 380 SMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQ 439

Query: 331 GLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           G  +  A      +   +     +++MY + G +E+A    + +  E   S W AL+
Sbjct: 440 GKWI-HAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLE-EKGVSTWNALI 494



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 11/180 (6%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           + AC+      +   IHA++ + G   +I +  +L++ Y+ +  +  A ++F  +    V
Sbjct: 428 ISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGV 487

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAH 133
            +W  +I GL+  G   +++  F  +    V PN  T V+VL AC  +    L    H H
Sbjct: 488 STWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHM---GLVDEGHRH 544

Query: 134 SLRNLNEN----NIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIGGYAERG 188
               + E+    NI     ++D   R G L     L   MP   +V +W  ++G   + G
Sbjct: 545 FNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYG 604


>gi|345505226|gb|AEN99837.1| chlororespiratory reduction 4, partial [Lobularia maritima]
          Length = 570

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 153/485 (31%), Positives = 255/485 (52%), Gaps = 37/485 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + ++ +   KACS     ++ ++IH  + +     D+F+QN L+  Y+    +  A Q+F
Sbjct: 84  DKFSLSLVTKACSRLGFAKEGMQIHGFLTKTVICSDLFLQNCLIGLYIKCSCLGYARQVF 143

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPN-ANTLVSVLSACSSLVSHKLG 127
           + +   D VS+ ++I G  KCG  + A ++F   D+ P     L+S  S        + G
Sbjct: 144 DRMPQRDSVSYNSMIDGYVKCGLIESARELF---DLMPKEKKNLISWNSMIGGYAQREDG 200

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
             I +     + E ++I  N+++D Y++ G +     LF  MP+R+VV+W TMI GYA+ 
Sbjct: 201 VDIASKLFAEMPEKDLISWNSLIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKL 260

Query: 188 GFCK-------------------------------EAVSVFQEMEKTKEAEPNEATLVNV 216
           GF                                 EA+ VF +MEK     P+E TLV V
Sbjct: 261 GFVHKAKSLFDVMPHRDVVAYNSMMGGYVQNKYHMEALEVFYDMEKESHLSPDETTLVIV 320

Query: 217 LSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD 276
           LSA + +  LS    +H YI  +  L +   +G A+I+MY KCG +  A+ VF  +  K 
Sbjct: 321 LSAIAQLGRLSKAVDIHLYIVEKRFL-LDGKLGVALIDMYSKCGSIQQAMAVFEGIENKS 379

Query: 277 KISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFK 336
              W+ +I GLA++G G  A  +   +    + PD +TF+ +++ACSH GLV +GL+ F+
Sbjct: 380 IDHWNAMIGGLAVHGLGEAAFDMLMEIEKRFIKPDYITFVGVLNACSHSGLVKEGLLCFE 439

Query: 337 AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND 396
            M   ++I P++QHY C+VD+  R+G +E A+  I EMPIE    +W   LNAC  H+  
Sbjct: 440 LMRRKHKIEPRLQHYGCMVDLLARSGSIELAKHLISEMPIEPNDVIWRTFLNACSHHKEF 499

Query: 397 EMFDR-IRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
           E  +  + ++L+ + G +  ++ L+SN +A  + WED  ++R  ++   ++K  GCSWIE
Sbjct: 500 ETRELVVAENLILQAGYNPSSYVLLSNMYASFEMWEDVRRVRTMMKERKIEKVPGCSWIE 559

Query: 456 VNPSI 460
           ++  +
Sbjct: 560 LDGKV 564



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 115/234 (49%), Gaps = 14/234 (5%)

Query: 75  DVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIH 131
           D   W  +I   S     ++A+ + C +   +V  +  +L  V  ACS L   K G  IH
Sbjct: 49  DPFLWNAVIKSHSHGVDPRQALFLLCSMIENNVPVDKFSLSLVTKACSRLGFAKEGMQIH 108

Query: 132 AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
               + +  +++ L N ++  YI+C  L     +F +MP+R+ VS+ +MI GY + G  +
Sbjct: 109 GFLTKTVICSDLFLQNCLIGLYIKCSCLGYARQVFDRMPQRDSVSYNSMIDGYVKCGLIE 168

Query: 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY-DLSVSNLVG- 249
            A  +F  M K K+         N++S  S I   +  +      S  + ++   +L+  
Sbjct: 169 SARELFDLMPKEKK---------NLISWNSMIGGYAQREDGVDIASKLFAEMPEKDLISW 219

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM 303
           N++I+ YVK G +  A  +F+++  +D ++W+T+I G A  G   +A  LF +M
Sbjct: 220 NSLIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHKAKSLFDVM 273


>gi|356546093|ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Glycine max]
          Length = 775

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 143/451 (31%), Positives = 256/451 (56%), Gaps = 5/451 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N + FT  L A +         ++H+  ++ G +  + + N+L+  YV    +  A + F
Sbjct: 218 NEFVFTSVLSALTCYMLVNTGRQVHSLAMKNGLVCIVSVANALVTMYVKCGSLEDALKTF 277

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHK 125
                 + ++W+ +++G ++ G   +A+ +F  +      P+  TLV V++ACS   +  
Sbjct: 278 ELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINACSDACAIV 337

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ +H +SL+   E  + + +A++D Y +CGS+      F  + + +VV WT++I GY 
Sbjct: 338 EGRQMHGYSLKLGYELQLYVLSALVDMYAKCGSIVDARKGFECIQQPDVVLWTSIITGYV 397

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G  + A++++ +M+      PN+ T+ +VL ACS+++AL  GK +H+ I  +Y+ S+ 
Sbjct: 398 QNGDYEGALNLYGKMQ-LGGVIPNDLTMASVLKACSNLAALDQGKQMHAGI-IKYNFSLE 455

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
             +G+A+  MY KCG +    ++F  +  +D ISW+ +ISGL+ NG G + L+LF  M +
Sbjct: 456 IPIGSALSAMYAKCGSLDDGYRIFWRMPARDVISWNAMISGLSQNGRGNEGLELFEKMCL 515

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
               PD+VTF+ L+SACSH GLVD+G + FK M   + I P ++HYAC+VD+  RAG L 
Sbjct: 516 EGTKPDNVTFVNLLSACSHMGLVDRGWVYFKMMFDEFNIAPTVEHYACMVDILSRAGKLH 575

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EA+ FI    ++    +W  LL A + HR+ ++     + L+    +    + L+S+ + 
Sbjct: 576 EAKEFIESATVDHGLCLWRILLAASKNHRDYDLGAYAGEKLMELGSLESSAYVLLSSIYT 635

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
              +WED  ++R  ++  G+ K+ GCSWIE+
Sbjct: 636 ALGKWEDVERVRGMMKARGVTKEPGCSWIEL 666



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/374 (29%), Positives = 192/374 (51%), Gaps = 13/374 (3%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           P S+ H    +AL  C+     +K   +HA ++  G      I NSL++ Y        A
Sbjct: 5   PLSHQHLQVLRALVHCTRHKQLRKGRALHARILVTGSFSSTQIANSLINLYAKCSHFSKA 64

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF--------CGIDVKPNANTLVSVLS 116
           + +F+S+   DVVSW  +I+  S+   H  ++ +             + PNA+TL  V +
Sbjct: 65  NLVFDSINNKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFT 124

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
           A S+L   + G+  HA +++    +++   +++L+ Y + G +     LF +MP+RN VS
Sbjct: 125 AASTLSDSRAGRQAHALAVKTACSHDVFAASSLLNMYCKTGLVFEARDLFDEMPERNAVS 184

Query: 177 WTTMIGGYAERGFCKEAVSVFQEME-KTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           W TMI GYA +    EA  +F+ M  + K    NE    +VLSA +    ++ G+ VHS 
Sbjct: 185 WATMISGYASQELADEAFELFKLMRHEEKGKNENEFVFTSVLSALTCYMLVNTGRQVHS- 243

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
           ++ +  L     V NA++ MYVKCG +  A++ F +   K+ I+WS +++G A  G   +
Sbjct: 244 LAMKNGLVCIVSVANALVTMYVKCGSLEDALKTFELSGNKNSITWSAMVTGFAQFGDSDK 303

Query: 296 ALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFK-AMSTVYEIVPQMQHYACV 354
           AL+LF  M  +   P + T + +I+ACS    + +G  +   ++   YE+  Q+   + +
Sbjct: 304 ALKLFYDMHQSGELPSEFTLVGVINACSDACAIVEGRQMHGYSLKLGYEL--QLYVLSAL 361

Query: 355 VDMYGRAGLLEEAE 368
           VDMY + G + +A 
Sbjct: 362 VDMYAKCGSIVDAR 375



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 19/220 (8%)

Query: 213 LVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 272
           ++  L  C+    L  G+ +H+ I      S S  + N++IN+Y KC     A  VF+ +
Sbjct: 13  VLRALVHCTRHKQLRKGRALHARILVTGSFS-STQIANSLINLYAKCSHFSKANLVFDSI 71

Query: 273 AYKDKISWSTVISGLAMNGCGRQALQLFSL-----MIINAVFPDDVTFIALISACS---- 323
             KD +SW+ +I+  +       +L +  L     M    + P+  T   + +A S    
Sbjct: 72  NNKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAASTLSD 131

Query: 324 -HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 382
              G     L +  A S  +++       + +++MY + GL+ EA     EMP E     
Sbjct: 132 SRAGRQAHALAVKTACS--HDVFAA----SSLLNMYCKTGLVFEARDLFDEMP-ERNAVS 184

Query: 383 WGALLNACRIHR-NDEMFDRIRQDLVNKKGVSVGTFALMS 421
           W  +++        DE F+  +     +KG +   F   S
Sbjct: 185 WATMISGYASQELADEAFELFKLMRHEEKGKNENEFVFTS 224


>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
          Length = 768

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 142/431 (32%), Positives = 247/431 (57%), Gaps = 5/431 (1%)

Query: 28  KALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS 87
           KA+E    +  +G   D     ++L   +   DI +  Q+F+ +  P + SW TI+SG S
Sbjct: 307 KAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSSPSLSSWNTILSGYS 366

Query: 88  KCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
           +   HKEA+ +F  +    V P+  TL  +LS+ + ++  + G+ +HA S + +   +I 
Sbjct: 367 QNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIY 426

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           L + ++  Y +CG +     +F ++ + ++V W +M+ G +     KEA + F++M + K
Sbjct: 427 LASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKM-REK 485

Query: 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
              P++ +   VLS C+ +S+LS G+ VHS I+ R        VG+A+I+MY KCGDV  
Sbjct: 486 GMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIA-REGYMNDAFVGSALIDMYSKCGDVDA 544

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
           A  VF+M+  K+ ++W+ +I G A NGCG +A+ L+  MI +   PD +TF+A+++ACSH
Sbjct: 545 ARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSH 604

Query: 325 GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 384
            GLVD G+ +F +M   + + P + HY C++D  GRAG L EAE  I +MP + +  +W 
Sbjct: 605 SGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWE 664

Query: 385 ALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444
            LL++CR++ +  +  R  ++L +    +   + L++N ++   RW+D   +R+ +    
Sbjct: 665 VLLSSCRVYADVSLARRAAEELFHLDPQNSAPYVLLANIYSSLGRWDDAKAVRELMSYNQ 724

Query: 445 LKKKTGCSWIE 455
           + K  G SWIE
Sbjct: 725 VVKDPGYSWIE 735



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 179/381 (46%), Gaps = 26/381 (6%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           L+ C     H     IHAH++      D F+ N L+ FY     I ++ ++F+ +   D+
Sbjct: 12  LQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDI 71

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGIDVKP--NANTLVSVLS---ACSSLVSHKLGKAIH 131
            +W  I+    K    ++A  +F  +  +   + NTL+S L+   AC +LV  + G+  H
Sbjct: 72  YTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGACGALVDVECGRRCH 131

Query: 132 AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
             S++   +NNI + NA+L  Y +C  +      F  +P+ N VS+T M+GG A+     
Sbjct: 132 GISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVN 191

Query: 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSS--------------ISALSFGKYVHSYIS 237
           EA  +F+ M + +    +  +L +VL  CS               +S+   G+ VH  ++
Sbjct: 192 EAFRLFRLMLRNR-IHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHC-LT 249

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            ++       + N++++MY K G++  A  +F  +     +SW+ +I+G        +A+
Sbjct: 250 IKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAI 309

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
           +    M  +   PD++T++ ++ AC   G ++ G  +F  MS+     P +  +  ++  
Sbjct: 310 EYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSS-----PSLSSWNTILSG 364

Query: 358 YGRAGLLEEAEAFIREMPIEA 378
           Y +    +EA    REM   +
Sbjct: 365 YSQNENHKEAVKLFREMQFRS 385



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 145/281 (51%), Gaps = 19/281 (6%)

Query: 111 LVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP 170
           L S+L  C    +H  GK IHAH LR+   ++  L N +++FY +C ++ +   LF +MP
Sbjct: 8   LASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMP 67

Query: 171 KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLS---ACSSISALS 227
           KR++ +W  ++G Y +    ++A  +F EM +      N  TL++ L+   AC ++  + 
Sbjct: 68  KRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWN--TLISALTRNGACGALVDVE 125

Query: 228 FGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGL 287
            G+  H  IS +  L  +  VGNA++ MY KC  +G AIQ F  +   +++S++ ++ GL
Sbjct: 126 CGRRCHG-ISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGL 184

Query: 288 AMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL-----IL-------- 334
           A +    +A +LF LM+ N +  D V+  +++  CS GG  + GL     +L        
Sbjct: 185 ADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQ 244

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP 375
              ++  +     +     ++DMY + G ++ AE     MP
Sbjct: 245 VHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMP 285



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 182/393 (46%), Gaps = 60/393 (15%)

Query: 33  HAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFH 92
           H   I+ G  ++I++ N+LL  Y   + I  A Q F  V  P+ VS+T ++ GL+     
Sbjct: 131 HGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQV 190

Query: 93  KEAIDMFCGI---DVKPNANTLVSVLSACSS--------------LVSHKLGKAIHAHSL 135
            EA  +F  +    +  ++ +L SVL  CS               L S   G+ +H  ++
Sbjct: 191 NEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTI 250

Query: 136 RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVS 195
           ++  E+++ L+N++LD Y + G++ S   +FV MP+ +VVSW  MI GY ++    +A+ 
Sbjct: 251 KHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIE 310

Query: 196 VFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINM 255
             Q M+     EP+E T VN+L AC                                   
Sbjct: 311 YLQRMQ-YHGFEPDEITYVNMLVAC----------------------------------- 334

Query: 256 YVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTF 315
            +K GD+    Q+F+ ++     SW+T++SG + N   ++A++LF  M   +V PD  T 
Sbjct: 335 -IKSGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTL 393

Query: 316 IALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP 375
             ++S+ + G ++ +G     A+S        +   + ++ MY + G +E A+     + 
Sbjct: 394 AIILSSLA-GMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIA 452

Query: 376 IEAEWSVWGALLNACRIHRNDE----MFDRIRQ 404
            E +   W +++    ++  D+     F ++R+
Sbjct: 453 -ELDIVCWNSMMAGLSLNSLDKEAFTFFKKMRE 484



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 97/207 (46%), Gaps = 10/207 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +++   L  C+      +  ++H+ +   G+++D F+ ++L+  Y    D+ +A  +F
Sbjct: 490 SQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVF 549

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHK 125
           + ++  + V+W  +I G ++ G   EA+ ++    G   KP+  T V+VL+ACS      
Sbjct: 550 DMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVD 609

Query: 126 LGKAIHAHSLRNLNENNIILDN--AILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIG 182
            G  I  +S++  +    ++D+   I+D   R G L     L  KMP K + + W  ++ 
Sbjct: 610 TGIKIF-NSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLLS 668

Query: 183 G---YAERGFCKEAVSVFQEMEKTKEA 206
               YA+    + A      ++    A
Sbjct: 669 SCRVYADVSLARRAAEELFHLDPQNSA 695


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 142/431 (32%), Positives = 241/431 (55%), Gaps = 7/431 (1%)

Query: 32  IHAHVIEYGHL--HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
           +HA+V+  G      + +  +L+  YV  +++  A ++F+ +    ++SWT +I+    C
Sbjct: 247 MHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHC 306

Query: 90  GFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
               E + +F    G  + PN  T++S++  C +  + +LGK +HA +LRN    +++L 
Sbjct: 307 NNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLA 366

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
            A +D Y +CG + S   +F     ++++ W+ MI  YA+     EA  +F  M      
Sbjct: 367 TAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCG-I 425

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
            PNE T+V++L  C+   +L  GK++HSYI  +  +    ++  + ++MY  CGD+  A 
Sbjct: 426 RPNERTMVSLLMICAKAGSLEMGKWIHSYID-KQGIKGDMILKTSFVDMYANCGDIDTAH 484

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
           ++F     +D   W+ +ISG AM+G G  AL+LF  M    V P+D+TFI  + ACSH G
Sbjct: 485 RLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSG 544

Query: 327 LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 386
           L+ +G  LF  M   +   P+++HY C+VD+ GRAGLL+EA   I+ MP+    +V+G+ 
Sbjct: 545 LLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSF 604

Query: 387 LNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446
           L AC++H+N ++ +   +  ++ +    G   LMSN +A A+RW D   IR  ++  G+ 
Sbjct: 605 LAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIV 664

Query: 447 KKTGCSWIEVN 457
           K+ G S IEVN
Sbjct: 665 KEPGVSSIEVN 675



 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 118/402 (29%), Positives = 204/402 (50%), Gaps = 9/402 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M    +  +++     LKAC L        E+H  V++ G   D+F+ N+L+  Y  V  
Sbjct: 115 MRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGS 174

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           +  A  +F+ +   DVVSW+T+I    + G   EA+D+   +    VKP+   ++S+   
Sbjct: 175 LALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITHV 234

Query: 118 CSSLVSHKLGKAIHAHSLRN--LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVV 175
            + L   KLGKA+HA+ +RN    ++ + L  A++D Y++C +LA    +F  + K +++
Sbjct: 235 LAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASII 294

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           SWT MI  Y       E V +F +M   +   PNE T+++++  C +  AL  GK +H++
Sbjct: 295 SWTAMIAAYIHCNNLNEGVRLFVKM-LGEGMFPNEITMLSLVKECGTAGALELGKLLHAF 353

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
            + R   ++S ++  A I+MY KCGDV  A  VF+    KD + WS +IS  A N C  +
Sbjct: 354 -TLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDE 412

Query: 296 ALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVV 355
           A  +F  M    + P++ T ++L+  C+  G ++ G  +   +     I   M      V
Sbjct: 413 AFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDK-QGIKGDMILKTSFV 471

Query: 356 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
           DMY   G ++ A     E   + + S+W A+++   +H + E
Sbjct: 472 DMYANCGDIDTAHRLFAE-ATDRDISMWNAMISGFAMHGHGE 512



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 193/393 (49%), Gaps = 18/393 (4%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           FTQ+    ++ H  Q   E+H ++ E   LH  FI+ S      + +   +A + ++S  
Sbjct: 36  FTQSQPKPNVPHIQQ---ELHINLNETQQLHGHFIKTS---SNCSYRVPLAALESYSS-- 87

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKLGKA 129
             +    + +I+   K     +A  ++    G D + +   + SVL AC  + S  LG+ 
Sbjct: 88  --NAAIHSFLITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQE 145

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           +H   ++N    ++ + NA++  Y   GSLA    LF K+  ++VVSW+TMI  Y   G 
Sbjct: 146 VHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGL 205

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL-V 248
             EA+ + ++M   +  +P+E  ++++    + ++ L  GK +H+Y+        S + +
Sbjct: 206 LDEALDLLRDMHVMR-VKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPL 264

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
             A+I+MYVKC ++  A +VF+ L+    ISW+ +I+         + ++LF  M+   +
Sbjct: 265 CTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGM 324

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
           FP+++T ++L+  C   G ++ G +L  A +        +      +DMYG+ G +  A 
Sbjct: 325 FPNEITMLSLVKECGTAGALELGKLL-HAFTLRNGFTLSLVLATAFIDMYGKCGDVRSAR 383

Query: 369 AFIREMPIEAEWSVWGALLNA-CRIHRNDEMFD 400
           +         +  +W A++++  + +  DE FD
Sbjct: 384 SVFDSFK-SKDLMMWSAMISSYAQNNCIDEAFD 415



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M  C    N  T    L  C+ A   +    IH+++ + G   D+ ++ S +  Y    D
Sbjct: 420 MTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGD 479

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           I +AH++F      D+  W  +ISG +  G  + A+++F  ++   V PN  T +  L A
Sbjct: 480 IDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHA 539

Query: 118 CS 119
           CS
Sbjct: 540 CS 541


>gi|297828249|ref|XP_002882007.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327846|gb|EFH58266.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 606

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 154/492 (31%), Positives = 257/492 (52%), Gaps = 36/492 (7%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML    S + ++ +  LKACS     +  ++IH  + + G   D+F+QN L+  Y+    
Sbjct: 105 MLENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGFLRKTGLWSDLFLQNCLIGLYLKCGC 164

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNA-NTLVSVLSACS 119
           +  A Q+F+ +   D VS+ ++I+G  KCG  + A ++F   D+ P     L+S  S  S
Sbjct: 165 LGFARQMFDRMPQRDSVSYNSMINGYVKCGLIESARELF---DLMPREMKNLISWNSMIS 221

Query: 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT 179
                  G  I +     + E ++I  N+++D Y++ G +     LF  MP+R+VV+  T
Sbjct: 222 GYAQTSEGVNIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTCAT 281

Query: 180 MIGGYAERGFCK-------------------------------EAVSVFQEMEKTKEAEP 208
           MI GYA+ GF                                 EA+ +F +MEK     P
Sbjct: 282 MIDGYAKLGFVHQAKTLFDQMPLRDVVAYNSMMAGYVQNKCHMEALEIFNDMEKESHLSP 341

Query: 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 268
           +E TLV +LSA + +  LS    +H YI  +    +   +G A+I+MY KCG +  A+ V
Sbjct: 342 DETTLVIILSAIAQLGRLSKATDMHLYIVEK-QFYLGGKLGVALIDMYSKCGSIQHAMLV 400

Query: 269 FNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328
           F  +  K    W+ +I GLA++G G  A  +   +   ++ PDD+TF+ +++ACSH GLV
Sbjct: 401 FEGIENKSIDHWNAMIGGLAVHGLGESAFNMLLQIERLSIIPDDITFVGVLNACSHSGLV 460

Query: 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388
            +GL+ F+ M   ++I P++QHY C+VD+  R+G +E A+  I EMPIE    +W   L 
Sbjct: 461 KEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLT 520

Query: 389 ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
           AC  H+  E  + + + L+ + G +  ++ L+SN +A    W+D  ++R  ++   ++K 
Sbjct: 521 ACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKI 580

Query: 449 TGCSWIEVNPSI 460
            GCSWIE++  +
Sbjct: 581 PGCSWIELDGRV 592



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 161/360 (44%), Gaps = 42/360 (11%)

Query: 68  FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSH 124
           F+     D   W  +I   S     ++A+ +FC +    V  +  +L  VL ACS L   
Sbjct: 71  FSPGEMEDPFLWNAVIKSHSHGKDPRQALLLFCLMLENGVSVDKFSLSLVLKACSRLGFV 130

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           K G  IH    +    +++ L N ++  Y++CG L     +F +MP+R+ VS+ +MI GY
Sbjct: 131 KGGMQIHGFLRKTGLWSDLFLQNCLIGLYLKCGCLGFARQMFDRMPQRDSVSYNSMINGY 190

Query: 185 AERGFCKEAVSVFQEMEKTKE------------AEPNEATLV--NVLSACSSISALSFGK 230
            + G  + A  +F  M +  +            A+ +E   +   + +       +S+  
Sbjct: 191 VKCGLIESARELFDLMPREMKNLISWNSMISGYAQTSEGVNIASKLFAEMPEKDLISWNS 250

Query: 231 YVHSYI--------STRYD-LSVSNLVGNA-VINMYVKCGDVGIAIQVFNMLAYKDKISW 280
            +  Y+           +D +   ++V  A +I+ Y K G V  A  +F+ +  +D +++
Sbjct: 251 MIDGYVKHGRIEDAKGLFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFDQMPLRDVVAY 310

Query: 281 STVISGLAMNGCGRQALQLFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMS 339
           +++++G   N C  +AL++F+ M   + + PD+ T + ++SA +  G + +        +
Sbjct: 311 NSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRLSKA-------T 363

Query: 340 TVYEIVPQMQHY------ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393
            ++  + + Q Y        ++DMY + G ++ A   + E         W A++    +H
Sbjct: 364 DMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHA-MLVFEGIENKSIDHWNAMIGGLAVH 422



 Score = 42.4 bits (98), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 6/138 (4%)

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334
           +D   W+ VI   +     RQAL LF LM+ N V  D  +   ++ ACS  G V  G+ +
Sbjct: 77  EDPFLWNAVIKSHSHGKDPRQALLLFCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQI 136

Query: 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA---CR 391
              +     +   +    C++ +Y + G L  A      MP     S + +++N    C 
Sbjct: 137 HGFLRKT-GLWSDLFLQNCLIGLYLKCGCLGFARQMFDRMPQRDSVS-YNSMINGYVKCG 194

Query: 392 -IHRNDEMFDRIRQDLVN 408
            I    E+FD + +++ N
Sbjct: 195 LIESARELFDLMPREMKN 212


>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14330-like [Glycine max]
          Length = 650

 Score =  266 bits (680), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 146/453 (32%), Positives = 254/453 (56%), Gaps = 12/453 (2%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGH--LHDIFIQNSLLHFYVTVKDIFSAHQIF--NSVV 72
           L AC      +   ++H H++   +  L +  ++  L+  Y     +  A ++F  +   
Sbjct: 77  LHACISRRSLEHGRKLHLHLLRSQNRVLENPTLKTKLITLYSVCGRVNEARRVFQIDDEK 136

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKA 129
            P+   W  +  G S+ GF  EA+ ++  +    VKP        L ACS L +  +G+A
Sbjct: 137 PPEEPVWVAMAIGYSRNGFSHEALLLYRDMLSCCVKPGNFAFSMALKACSDLDNALVGRA 196

Query: 130 IHAHSLR-NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
           IHA  ++ ++ E + +++NA+L  Y+  G       +F +MP+RNVVSW T+I G+A +G
Sbjct: 197 IHAQIVKHDVGEADQVVNNALLGLYVEIGCFDEVLKVFEEMPQRNVVSWNTLIAGFAGQG 256

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STRYDLSVSNL 247
              E +S F+ M++      +  TL  +L  C+ ++AL  GK +H  I  +R +  V  L
Sbjct: 257 RVFETLSAFRVMQREGMGF-SWITLTTMLPVCAQVTALHSGKEIHGQILKSRKNADVPLL 315

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
             N++++MY KCG++G   +VF+ +  KD  SW+T+++G ++NG   +AL LF  MI   
Sbjct: 316 --NSLMDMYAKCGEIGYCEKVFDRMHSKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYG 373

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           + P+ +TF+AL+S CSH GL  +G  LF  +   + + P ++HYAC+VD+ GR+G  +EA
Sbjct: 374 IEPNGITFVALLSGCSHSGLTSEGKRLFSNVMQDFGVQPSLEHYACLVDILGRSGKFDEA 433

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
            +    +P+    S+WG+LLN+CR++ N  + + + + L   +  + G + ++SN +A A
Sbjct: 434 LSVAENIPMRPSGSIWGSLLNSCRLYGNVALAEVVAERLFEIEPNNPGNYVMLSNIYANA 493

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
             WED  ++R+ +   G+KK  GCSWI++   I
Sbjct: 494 GMWEDVKRVREMMALTGMKKDAGCSWIQIKHKI 526



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 143/296 (48%), Gaps = 6/296 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYG-HLHDIFIQNSLLHFYVTVK 59
           MLSC     ++ F+ ALKACS          IHA ++++     D  + N+LL  YV + 
Sbjct: 166 MLSCCVKPGNFAFSMALKACSDLDNALVGRAIHAQIVKHDVGEADQVVNNALLGLYVEIG 225

Query: 60  DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNAN---TLVSVLS 116
                 ++F  +   +VVSW T+I+G +  G   E +  F  +  +       TL ++L 
Sbjct: 226 CFDEVLKVFEEMPQRNVVSWNTLIAGFAGQGRVFETLSAFRVMQREGMGFSWITLTTMLP 285

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
            C+ + +   GK IH   L++    ++ L N+++D Y +CG +  C  +F +M  +++ S
Sbjct: 286 VCAQVTALHSGKEIHGQILKSRKNADVPLLNSLMDMYAKCGEIGYCEKVFDRMHSKDLTS 345

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           W TM+ G++  G   EA+ +F EM +    EPN  T V +LS CS     S GK + S +
Sbjct: 346 WNTMLAGFSINGQIHEALCLFDEMIRYG-IEPNGITFVALLSGCSHSGLTSEGKRLFSNV 404

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS-WSTVISGLAMNG 291
              + +  S      ++++  + G    A+ V   +  +   S W ++++   + G
Sbjct: 405 MQDFGVQPSLEHYACLVDILGRSGKFDEALSVAENIPMRPSGSIWGSLLNSCRLYG 460


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  266 bits (680), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 143/452 (31%), Positives = 249/452 (55%), Gaps = 6/452 (1%)

Query: 9    NHYTFTQALKACS-LAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
            +H+T    L+ACS L      + +IH H ++ G++ D F+  +L+  Y     +  A  +
Sbjct: 1004 DHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFL 1063

Query: 68   FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSH 124
            F +    D+  W  ++ G       K+A+++F  I     K +  TL +   AC  LV  
Sbjct: 1064 FQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLL 1123

Query: 125  KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
              GK IHAH+++   ++++ +++ ILD YI+CG + + G +F  +   + V+WT+MI G 
Sbjct: 1124 DQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGC 1183

Query: 185  AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
             + G   +A+ ++  M +++   P+E T   ++ A S ++AL  G+ +H+ +  + D   
Sbjct: 1184 VDNGNEDQALRIYHRMRQSR-VMPDEYTFATLIKASSCVTALEQGRQLHANV-IKLDCVS 1241

Query: 245  SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
               VG ++++MY KCG++  A ++F  +  ++   W+ ++ GLA +G   +A+ LF  M 
Sbjct: 1242 DPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMK 1301

Query: 305  INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
             + + PD V+FI ++SACSH GL  +      +M   Y I P+++HY+C+VD  GRAGL+
Sbjct: 1302 SHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLV 1361

Query: 365  EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
            +EA+  I  MP +A  S+  ALL ACRI  + E   R+   L   +      + L+SN +
Sbjct: 1362 QEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIY 1421

Query: 425  AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
            A A+RW+D    R  ++R  +KK  G SWI+V
Sbjct: 1422 AAANRWDDVTDARKMMKRKNVKKDPGFSWIDV 1453



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/395 (28%), Positives = 202/395 (51%), Gaps = 10/395 (2%)

Query: 8    YNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQI 67
            Y+  T    L A +     +   ++H   ++ G   D+ + NSL++ Y  +   + A ++
Sbjct: 902  YDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREV 961

Query: 68   FNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSH 124
            FN +   D++SW ++IS  ++    +E++++F  +    +KP+  TL SVL ACSSL+  
Sbjct: 962  FNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDG 1021

Query: 125  -KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
              + + IH H+L+  N  +  +   ++D Y + G +    +LF      ++  W  M+ G
Sbjct: 1022 LNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFG 1081

Query: 184  YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDL 242
            Y      K+A+ +F  + K+ E + ++ TL     AC  +  L  GK +H++ I   +D 
Sbjct: 1082 YIIGNDGKKALELFSLIHKSGE-KSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDS 1140

Query: 243  SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
             +   V + +++MY+KCGD+  A  VFN ++  D ++W+++ISG   NG   QAL+++  
Sbjct: 1141 DLH--VNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHR 1198

Query: 303  MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362
            M  + V PD+ TF  LI A S    ++QG  L  A     + V        +VDMY + G
Sbjct: 1199 MRQSRVMPDEYTFATLIKASSCVTALEQGRQL-HANVIKLDCVSDPFVGTSLVDMYAKCG 1257

Query: 363  LLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397
             +E+A    ++M +    ++W A+L     H N E
Sbjct: 1258 NIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGNAE 1291



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 172/343 (50%), Gaps = 14/343 (4%)

Query: 74   PDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVKPNANTLVSVLSACSSLVSHKLGKAI 130
            PDV  W   +S     G +  AI+ F    G+++  +A TL+ VL+A +     +LGK +
Sbjct: 867  PDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQV 926

Query: 131  HAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFC 190
            H  ++++  ++++ + N++++ Y + G       +F  M   +++SW +MI   A+    
Sbjct: 927  HGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLE 986

Query: 191  KEAVSVFQEMEKTKEAEPNEATLVNVLSACSS-ISALSFGKYVHSYISTRYDLSVSNLVG 249
            +E+V++F ++   +  +P+  TL +VL ACSS I  L+  + +H +     +++ S  V 
Sbjct: 987  EESVNLFIDLLH-EGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADS-FVA 1044

Query: 250  NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
              +I++Y K G +  A  +F      D   W+ ++ G  +   G++AL+LFSL+  +   
Sbjct: 1045 TTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEK 1104

Query: 310  PDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
             D +T      AC    L+DQG  I   A+   ++    +   + ++DMY + G +  A 
Sbjct: 1105 SDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFD--SDLHVNSGILDMYIKCGDMVNAG 1162

Query: 369  AFIREMPIEAEWSVWGALLNACRIHRNDE----MFDRIRQDLV 407
                 +    + + W ++++ C  + N++    ++ R+RQ  V
Sbjct: 1163 IVFNYISAPDDVA-WTSMISGCVDNGNEDQALRIYHRMRQSRV 1204



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 101/203 (49%), Gaps = 7/203 (3%)

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           LGK  HA  + + +  +  L N +L  Y +CGSL+S   +F   P+R++V+W  ++G YA
Sbjct: 639 LGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYA 698

Query: 186 -----ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
                  G  +E + +F+ + +         TL  VL  C +   L   + VH Y + + 
Sbjct: 699 ASVDSNDGNAQEGLHLFRLL-RASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGY-AIKI 756

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
            L     V  A++N+Y KCG +  A  +F+ +  +D + W+ ++ G    G  ++A QLF
Sbjct: 757 GLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLF 816

Query: 301 SLMIINAVFPDDVTFIALISACS 323
           S    + + PD+ +   +++  S
Sbjct: 817 SEFHRSGLRPDEFSVQLILNGVS 839



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 97/200 (48%), Gaps = 9/200 (4%)

Query: 33  HAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGL-----S 87
           HA ++  G   D F+ N+LL  Y     + SA Q+F++    D+V+W  I+        S
Sbjct: 644 HARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDS 703

Query: 88  KCGFHKEAIDMFCGIDVKPNANT---LVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
             G  +E + +F  +     + T   L  VL  C +       + +H ++++   E ++ 
Sbjct: 704 NDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVF 763

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK 204
           +  A+++ Y +CG +     LF  M +R+VV W  M+ GY + G  KEA  +F E  ++ 
Sbjct: 764 VSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSG 823

Query: 205 EAEPNEATLVNVLSACSSIS 224
              P+E ++  +L+  S ++
Sbjct: 824 -LRPDEFSVQLILNGVSEVN 842


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  266 bits (680), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 155/466 (33%), Positives = 246/466 (52%), Gaps = 43/466 (9%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYV--TVKDIFSAHQI-FNSVVFPDVVSWTTIISGLS 87
           +IHA +++ G + D +     L   +  T  D     QI F+    PD   W  +I G S
Sbjct: 61  QIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFS 120

Query: 88  KCGFHKEA-----IDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN 142
            C    E        M C      NA T  S+L ACS+L + +    IHA   +   EN+
Sbjct: 121 -CSDEPERSLLLYQRMLC-CSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYEND 178

Query: 143 IILDNAILDFYIRCGSLASCGYLFVKMPK------------------------------- 171
           +   N++++ Y   G+      LF ++PK                               
Sbjct: 179 VYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVE 238

Query: 172 RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKY 231
           +N +SWTTMI GY + G  KEA+ +F EM+ + + EP+  +L N LSAC+ + AL  GK+
Sbjct: 239 KNAISWTTMISGYVQAGMHKEALQLFHEMQNS-DVEPDNVSLANALSACAQLGALEQGKW 297

Query: 232 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNG 291
           +HSY+ T+  + + +++G  +I+MY KCGD+G A++VF  +  K   +W+ +ISG A +G
Sbjct: 298 IHSYL-TKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHG 356

Query: 292 CGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY 351
            GR+A+  F  M    + P+ +TF  +++ACS+ GLV++G ++F  M   Y + P ++HY
Sbjct: 357 HGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHY 416

Query: 352 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKG 411
            CVVD+  RAGLL+EA+ FI+EMP++    +WGALL ACRIH+N E+ + I + L+    
Sbjct: 417 GCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDP 476

Query: 412 VSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
              G +   +N  A   +W+   + R  ++  G+ K  GCS I + 
Sbjct: 477 YHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLE 522



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 158/326 (48%), Gaps = 39/326 (11%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML C + +N YTF   LKACS     ++  +IHA + + G+ +D++  NSL++ Y    +
Sbjct: 135 MLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYAATGN 194

Query: 61  IFSAHQIFNSVVFPDVV-------------------------------SWTTIISGLSKC 89
              AH +F+ +  PD V                               SWTT+ISG  + 
Sbjct: 195 FKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQA 254

Query: 90  GFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD 146
           G HKEA+ +F  +   DV+P+  +L + LSAC+ L + + GK IH++  +     + +L 
Sbjct: 255 GMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLG 314

Query: 147 NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206
             ++D Y +CG +     +F  + +++V +WT +I GYA  G  +EA+S F EM+K    
Sbjct: 315 CVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMG-I 373

Query: 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266
           +PN  T   VL+ACS    +  GK +   +   Y+L  +      V+++  + G +  A 
Sbjct: 374 KPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAK 433

Query: 267 QVFNMLAYKDKISWSTVISGLAMNGC 292
           +    +  K     + VI G  +  C
Sbjct: 434 RFIQEMPLKP----NAVIWGALLKAC 455



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 133/308 (43%), Gaps = 54/308 (17%)

Query: 128 KAIHAHSLRNLNENNIILDN-AILDFYIRCGSLASCGYL------FVKMPKRNVVSWTTM 180
           K IHA  L+      +I D+ AI  F   C S  S  +L      F    + +   W  M
Sbjct: 60  KQIHARMLKT----GLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNLM 115

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           I G++     + ++ ++Q M     A  N  T  ++L ACS++SAL     +H+ I T+ 
Sbjct: 116 IRGFSCSDEPERSLLLYQRM-LCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQI-TKL 173

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA------------ 288
                    N++IN Y   G+  +A  +F+ +   D +SW++VI G A            
Sbjct: 174 GYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLF 233

Query: 289 -------------------MNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVD 329
                                G  ++ALQLF  M  + V PD+V+    +SAC+  G ++
Sbjct: 234 RKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALE 293

Query: 330 QGLILFKAMSTVYEIVPQMQHYACV-VDMYGRAGLLEEA-EAF--IREMPIEAEWSVWGA 385
           QG  +   ++     +  +    CV +DMY + G + EA E F  I+   ++A    W A
Sbjct: 294 QGKWIHSYLTKTRIRMDSV--LGCVLIDMYAKCGDMGEALEVFKNIQRKSVQA----WTA 347

Query: 386 LLNACRIH 393
           L++    H
Sbjct: 348 LISGYAYH 355


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  266 bits (680), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 147/417 (35%), Positives = 235/417 (56%), Gaps = 12/417 (2%)

Query: 44  DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID 103
           D+F  N +L  YV  +D+ +A  +F  +   D+VSW  ++SG ++ GF  EA ++F  + 
Sbjct: 25  DLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYKMP 84

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCG 163
           +K N  +   +L+A       +  K +    +    +  ++  N ++  ++R        
Sbjct: 85  LK-NGISWNGLLAAYVQNGRIEDAKRLFESKM----DWTLVSWNCLMGGFVR-----KRR 134

Query: 164 YLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI 223
            LF  MP+R+ +SW+ MI GY++ G  +EA+  F EM++  E   N ++    LS CS+I
Sbjct: 135 NLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCE-RLNRSSFTCALSTCSNI 193

Query: 224 SALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTV 283
           +AL  G+ +H  +  +        VGNA++ MY KCG +  A   F  +  KD +SW+T+
Sbjct: 194 AALELGRQLHCRL-VKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTM 252

Query: 284 ISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 343
           I G A +G G +AL +F LM    + PDD T +++++ACSH GLVDQG   F +M+  Y 
Sbjct: 253 IHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYG 312

Query: 344 IVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIR 403
           I  ++ HY C+VD+ GRAG LEEA+  ++ MP E + + WGALL A RIH N E+ ++  
Sbjct: 313 ITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAA 372

Query: 404 QDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           Q +   +  + G + L+S  +A + RW D  K+R E+R  G+KK  G SW+EV   I
Sbjct: 373 QIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLEVQNKI 429



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 122/257 (47%), Gaps = 19/257 (7%)

Query: 138 LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVF 197
           + E ++   N +L  Y+R   L +   LF +MP+R++VSW  M+ GYA+ GF  EA  +F
Sbjct: 21  MPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIF 80

Query: 198 QEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYV 257
            +M        N  +   +L+A      +   K +     ++ D ++ +   N ++  +V
Sbjct: 81  YKM-----PLKNGISWNGLLAAYVQNGRIEDAKRL---FESKMDWTLVSW--NCLMGGFV 130

Query: 258 KCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIA 317
           +         +F+ +  +D ISWS +I+G + NGC  +AL  F  M  +    +  +F  
Sbjct: 131 R-----KRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTC 185

Query: 318 LISACSHGGLVDQGLILF-KAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPI 376
            +S CS+   ++ G  L  + +   Y+    + +   ++ MY + G ++EA    +E+ +
Sbjct: 186 ALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGN--ALLAMYCKCGSIDEARDAFQEI-L 242

Query: 377 EAEWSVWGALLNACRIH 393
           E +   W  +++    H
Sbjct: 243 EKDVVSWNTMIHGYARH 259



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 93/203 (45%), Gaps = 12/203 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  +FT AL  CS     +   ++H  +++ G+    ++ N+LL  Y     I  A   F
Sbjct: 179 NRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAF 238

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHK 125
             ++  DVVSW T+I G ++ GF +EA+ +F       ++P+  T+VSVL+ACS      
Sbjct: 239 QEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVD 298

Query: 126 LGKAIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIG- 182
            G        R+      ++    ++D   R G L     L   MP + +  +W  ++G 
Sbjct: 299 QGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGA 358

Query: 183 ----GYAERGFCKEAVSVFQEME 201
               G  E G  ++A  +  EME
Sbjct: 359 SRIHGNTELG--EKAAQIIFEME 379


>gi|354805159|gb|AER41579.1| CRR4 [Oryza brachyantha]
          Length = 626

 Score =  266 bits (680), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 159/490 (32%), Positives = 259/490 (52%), Gaps = 31/490 (6%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML+     N +TFT  L+AC+L    +    +H  ++ +G   ++F+QN+LL  Y     
Sbjct: 96  MLAAGVPPNGFTFTFLLRACALLGFPRPCRCVHGQIVRWGFGSEVFVQNTLLDVYYRCGG 155

Query: 61  ---IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKP--NANTLVSVL 115
              + +A Q+F+ +V  DVVSW +II      G +  A+++F  +  +   + NTLV+  
Sbjct: 156 PGRVAAARQVFDEMVDRDVVSWNSIIGVYMSSGDYTGAMELFEAMPERNVVSWNTLVAGF 215

Query: 116 SACSSLVSHKL-----------------------GKAIHAHSL--RNLNENNIILDNAIL 150
           +    +V+ +                        G    A S+  R   + +++   A++
Sbjct: 216 ARVGDMVTAQTVFDRMPSRNAISWNLMISGYASSGDVEAARSMFDRMDQKKDVVSWTAMV 275

Query: 151 DFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNE 210
             Y + G L +   LF  MP +N+VSW  MI GY       EA+  FQ M       P+E
Sbjct: 276 SAYAKIGDLDTAKELFDHMPLKNLVSWNAMITGYNHNSRYGEALRTFQLMMLEGRFRPDE 335

Query: 211 ATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN 270
           ATLV+V+SAC+ + ++ +  ++ S+I  + ++ ++  +GNA+I+M+ KCGDVG A  +F 
Sbjct: 336 ATLVSVVSACAQLGSVEYCNWISSFIR-KSNVHLTIALGNALIDMFAKCGDVGRAQSIFY 394

Query: 271 MLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQ 330
            +  +  I+W+T+ISG A NG  R+AL +++ M    V  DD+ FIA ++AC HGGL+ +
Sbjct: 395 EMKTRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDDMVFIAALAACVHGGLLQE 454

Query: 331 GLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 390
           G  +F  M   Y I P+M+HY CVVD+ GRAG L+EA  FI  MP+E    +W  LL++C
Sbjct: 455 GWSIFNEMVEQYNIQPRMEHYGCVVDLLGRAGNLQEAVLFIESMPLEPSVVIWATLLSSC 514

Query: 391 RIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTG 450
             H N E  D + + +   +  +     L+SN+ A   RW+     R  +R  G++K  G
Sbjct: 515 VAHGNAEFIDYVSKKITELEPFNSSYQVLVSNSSALEGRWDGVIGARTIMRNWGIEKVPG 574

Query: 451 CSWIEVNPSI 460
            S I+V   +
Sbjct: 575 SSSIQVGSEV 584



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 149/333 (44%), Gaps = 38/333 (11%)

Query: 77  VSWTTIISGLSKCGFHKE-------AIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKA 129
           VS  T+I  L+    H+        A        V PN  T   +L AC+ L   +  + 
Sbjct: 67  VSHNTLIERLAGARGHRPVPADALAAYTAMLAAGVPPNGFTFTFLLRACALLGFPRPCRC 126

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGS---LASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           +H   +R    + + + N +LD Y RCG    +A+   +F +M  R+VVSW ++IG Y  
Sbjct: 127 VHGQIVRWGFGSEVFVQNTLLDVYYRCGGPGRVAAARQVFDEMVDRDVVSWNSIIGVYMS 186

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNE-----------ATLVNVLSACSSISALSFGKYVHSY 235
            G    A+ +F+ M +      N             T   V     S +A+S+   +  Y
Sbjct: 187 SGDYTGAMELFEAMPERNVVSWNTLVAGFARVGDMVTAQTVFDRMPSRNAISWNLMISGY 246

Query: 236 IST-----------RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVI 284
            S+           R D     +   A+++ Y K GD+  A ++F+ +  K+ +SW+ +I
Sbjct: 247 ASSGDVEAARSMFDRMDQKKDVVSWTAMVSAYAKIGDLDTAKELFDHMPLKNLVSWNAMI 306

Query: 285 SGLAMNGCGRQALQLFSLMIINAVF-PDDVTFIALISACSHGGLVD--QGLILFKAMSTV 341
           +G   N    +AL+ F LM++   F PD+ T ++++SAC+  G V+    +  F   S V
Sbjct: 307 TGYNHNSRYGEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIRKSNV 366

Query: 342 YEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
           +  +        ++DM+ + G +  A++   EM
Sbjct: 367 HLTIALGN---ALIDMFAKCGDVGRAQSIFYEM 396


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  266 bits (680), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 142/439 (32%), Positives = 261/439 (59%), Gaps = 12/439 (2%)

Query: 28  KALEIHAHVIEYG-HLHDIFIQNSLLHFYVTVKD---IFSAHQIFNSVVFP-DVVSWTTI 82
           K  +IHA  I  G  + D  +   L+ + V++     +  AH++F+ +  P +V  W T+
Sbjct: 32  KLRQIHAFSIRNGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTL 91

Query: 83  ISGLSKCGFHKEAIDMFCGID----VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNL 138
           I G ++ G    A+ ++  +     V+P+ +T   +L A   +   +LG+ IH+  +R+ 
Sbjct: 92  IRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHSVVIRSG 151

Query: 139 NENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQ 198
             + I + N++L  Y  CG +AS   +F KMP++++V+W ++I G+AE G  +EA++++ 
Sbjct: 152 FGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYT 211

Query: 199 EMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVK 258
           EM+  K  +P+  T+V++LSAC+ I AL+ GK  H Y+  +  L+ +    N ++++Y +
Sbjct: 212 EMD-LKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYM-IKVGLTRNLHSSNVLLDLYAR 269

Query: 259 CGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLM-IINAVFPDDVTFIA 317
           CG V  A  +F+ +  K+ +SW+++I GLA+NG G++A++LF  M     + P ++TF+ 
Sbjct: 270 CGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVG 329

Query: 318 LISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIE 377
           ++ ACSH G+V +G   F+ MS  Y+I P+++H+ C+VD+  RAG +++A  +I +MP++
Sbjct: 330 ILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQ 389

Query: 378 AEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIR 437
               +W  LL AC +H + ++ +  R  ++  +    G + L+SN +A   RW D  KIR
Sbjct: 390 PNVVIWRTLLGACTVHGDSDLAELARMKILQLEPNHSGDYVLLSNMYASEQRWSDVQKIR 449

Query: 438 DEIRRMGLKKKTGCSWIEV 456
            ++ R G++K  G S +EV
Sbjct: 450 KQMLRDGVRKVPGHSLVEV 468



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 92/213 (43%), Gaps = 21/213 (9%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           +T    L AC+           H ++I+ G   ++   N LL  Y     +  A  +F+ 
Sbjct: 223 FTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDE 282

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK----PNANTLVSVLSACSSLVSHKL 126
           +V  + VSWT++I GL+  G  KEAI++F  ++ K    P   T V +L ACS     K 
Sbjct: 283 MVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVKE 342

Query: 127 GKAIHAHSLRNLNENNIILDN-----AILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTM 180
           G        R ++E   I         ++D   R G +       +KMP + NVV W T+
Sbjct: 343 G----FEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTL 398

Query: 181 IGGYAERGFCKEAVSVFQEMEKTK--EAEPNEA 211
           +G     G      S   E+ + K  + EPN +
Sbjct: 399 LGACTVHG-----DSDLAELARMKILQLEPNHS 426


>gi|57899090|dbj|BAD86909.1| putative PPR986-12 [Oryza sativa Japonica Group]
          Length = 560

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 152/470 (32%), Positives = 256/470 (54%), Gaps = 19/470 (4%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M++  ++ N YT +  L AC        A+ +HA  +  G     ++ N+L+  Y ++ +
Sbjct: 60  MVAAGAAPNEYTLSSVLTACRGPCAPAMAMPLHAVAVRRGVDRMPYVVNALIDSYASLAE 119

Query: 61  -IFSAHQIFNSV-VFPDVVSWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNANTLVS 113
            +  A ++F+++       SWT++I+G ++ G  +  + +F      G+++   A ++  
Sbjct: 120 GVVDARRLFDALGSGRTAASWTSMIAGYARWGQERTGLRLFKTMLKDGVELSTFACSIA- 178

Query: 114 VLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
            L AC+ ++   LG+ +H   ++   + N+ + N+++D Y  C  +     LF   P+RN
Sbjct: 179 -LHACTLVIDLCLGQQLHLQCIKKALDVNLAVVNSLIDMYCTCARILDARSLFDGTPERN 237

Query: 174 VVSWTTMIGGYAERGFCKE--AVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKY 231
           +++W TMI GY++   C    A+ +  EM      EPN  TL ++ SAC+ ++AL  GK 
Sbjct: 238 LITWNTMIAGYSQ---CDPLMALQLLLEMND----EPNCFTLTSITSACADLAALRCGKQ 290

Query: 232 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNG 291
           VH  +  R   S    +GNA+++MY KCG +  A  VF+ +  KDK SW+++I+G  MNG
Sbjct: 291 VHGAV-LRRSYSDDLQMGNALVDMYSKCGSITNAKNVFDRMGCKDKFSWTSMIAGYGMNG 349

Query: 292 CGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY 351
            G +A+QLFS MI   V PD V F++LIS+CSH GLVD+G   F++M   Y + P  + Y
Sbjct: 350 YGNEAVQLFSSMIHAGVHPDHVVFLSLISSCSHAGLVDEGWNFFRSMINEYNLQPNKEVY 409

Query: 352 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKG 411
             VV++  RAG L EA   I  MP   +  VWGALL A ++H N EM     + +     
Sbjct: 410 GSVVNLLARAGRLREALDLIDTMPFAPDEYVWGALLGASKMHNNVEMGRLAARKITEINP 469

Query: 412 VSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
             V  + ++++ +A   +W +    R  +R +G +K+ G SWIEV   ++
Sbjct: 470 DDVKNYIMLASIYAAGSKWGEYAFTRRSLRGIGSRKEAGISWIEVMDKMY 519



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 156/334 (46%), Gaps = 23/334 (6%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSS 120
           A  +F+ +   DVV+WT ++SG +  G  +EA+D+F         PN  TL SVL+AC  
Sbjct: 22  ARALFDEMPERDVVAWTAMLSGYASNGLRREALDVFRRMVAAGAAPNEYTLSSVLTACRG 81

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCG-SLASCGYLFVKM-PKRNVVSWT 178
             +  +   +HA ++R   +    + NA++D Y      +     LF  +   R   SWT
Sbjct: 82  PCAPAMAMPLHAVAVRRGVDRMPYVVNALIDSYASLAEGVVDARRLFDALGSGRTAASWT 141

Query: 179 TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST 238
           +MI GYA  G  +  + +F+ M K    E +       L AC+ +  L  G+ +H     
Sbjct: 142 SMIAGYARWGQERTGLRLFKTMLKDG-VELSTFACSIALHACTLVIDLCLGQQLH-LQCI 199

Query: 239 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQ 298
           +  L V+  V N++I+MY  C  +  A  +F+    ++ I+W+T+I+G +   C    L 
Sbjct: 200 KKALDVNLAVVNSLIDMYCTCARILDARSLFDGTPERNLITWNTMIAGYSQ--C--DPLM 255

Query: 299 LFSLMIINAVFPDDVTFIALISACS-----HGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
              L++     P+  T  ++ SAC+       G    G +L ++ S        +Q    
Sbjct: 256 ALQLLLEMNDEPNCFTLTSITSACADLAALRCGKQVHGAVLRRSYSD------DLQMGNA 309

Query: 354 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           +VDMY + G +  A+     M  + ++S W +++
Sbjct: 310 LVDMYSKCGSITNAKNVFDRMGCKDKFS-WTSMI 342



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 86/154 (55%), Gaps = 4/154 (2%)

Query: 157 GSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNV 216
           G++     LF +MP+R+VV+WT M+ GYA  G  +EA+ VF+ M     A PNE TL +V
Sbjct: 17  GAVCHARALFDEMPERDVVAWTAMLSGYASNGLRREALDVFRRMVAAG-AAPNEYTLSSV 75

Query: 217 LSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGD-VGIAIQVFNMLAY- 274
           L+AC    A +    +H+ ++ R  +     V NA+I+ Y    + V  A ++F+ L   
Sbjct: 76  LTACRGPCAPAMAMPLHA-VAVRRGVDRMPYVVNALIDSYASLAEGVVDARRLFDALGSG 134

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
           +   SW+++I+G A  G  R  L+LF  M+ + V
Sbjct: 135 RTAASWTSMIAGYARWGQERTGLRLFKTMLKDGV 168


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 151/455 (33%), Positives = 250/455 (54%), Gaps = 7/455 (1%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    L A +     +  + I    ++ G   D ++   L+  +   +D+ +A  +F  +
Sbjct: 206 TVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMI 265

Query: 72  VFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDV---KPNANTLVSVLSACSSLVSHKLGK 128
             PD+VS+  +ISG S  G  + A+  F  + V   + +++T+V ++   S      L  
Sbjct: 266 RKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLAC 325

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            I    +++       +  A+   Y R   +     LF +  ++ V +W  MI GYA+ G
Sbjct: 326 CIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSG 385

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
             + A+S+FQEM  T E  PN  T+ ++LSAC+ + ALSFGK VH  I ++ +L  +  V
Sbjct: 386 LTEMAISLFQEM-MTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSK-NLEQNIYV 443

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
             A+I+MY KCG++  A Q+F++ + K+ ++W+T+I G  ++G G +AL+LF+ M+    
Sbjct: 444 STALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGF 503

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
            P  VTF++++ ACSH GLV +G  +F AM   Y I P  +HYAC+VD+ GRAG LE+A 
Sbjct: 504 QPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKAL 563

Query: 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428
            FIR+MP+E   +VWG LL AC IH++  +     + L      +VG + L+SN ++   
Sbjct: 564 EFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASERLFELDPGNVGYYVLLSNIYSVER 623

Query: 429 RWEDTNKIRDEIRRMGLKKKTGCSWIEVN--PSIF 461
            +     +R+ +++  L K  GC+ IEVN  P +F
Sbjct: 624 NFPKAASVREAVKKRNLSKTPGCTLIEVNGTPHVF 658



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 170/393 (43%), Gaps = 48/393 (12%)

Query: 18  KACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV 77
           KAC+  H      E HA +I  G+ HD+     L      V     A  +F SV  PD+ 
Sbjct: 17  KACTFPH----LAETHAQLIRNGYQHDLATVTKLTQKLFDVGATRHARALFFSVPKPDIF 72

Query: 78  SWTTIISGLSKCGFHKEA------IDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIH 131
            +  +I G S   F  +A        +     + P+  T    +SA        LG  +H
Sbjct: 73  LFNVLIKGFS---FSPDASSISFYTHLLKNTTLSPDNFTYAFAISASPD---DNLGMCLH 126

Query: 132 AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191
           AH++ +  ++N+ + +A++D Y +   +A    +F KMP R+ V W TMI G        
Sbjct: 127 AHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYD 186

Query: 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNA 251
           ++V VF++M   +    +  T+  VL A + +  +  G  +   ++ +      + V   
Sbjct: 187 DSVQVFKDM-VAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQC-LALKLGFHFDDYVLTG 244

Query: 252 VINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD 311
           +I+++ KC DV  A  +F M+   D +S++ +ISG + NG    A++ F  ++++     
Sbjct: 245 LISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVS 304

Query: 312 DVTFIALI-----------SACSHGGLVDQGLIL----FKAMSTVYEIVPQMQ------- 349
             T + LI           + C  G  V  G IL      A++T+Y  + ++        
Sbjct: 305 SSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFD 364

Query: 350 --------HYACVVDMYGRAGLLEEAEAFIREM 374
                    +  ++  Y ++GL E A +  +EM
Sbjct: 365 ESSEKTVAAWNAMISGYAQSGLTEMAISLFQEM 397



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 7/189 (3%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M++   + N  T T  L AC+          +H  +       +I++  +L+  Y    +
Sbjct: 397 MMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGN 456

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSA 117
           I  A Q+F+     + V+W T+I G    G+  EA+ +F     +  +P++ T +SVL A
Sbjct: 457 ISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYA 516

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDN--AILDFYIRCGSLASCGYLFVKMP-KRNV 174
           CS     + G  I  H++ N      + ++   ++D   R G L        KMP +   
Sbjct: 517 CSHAGLVREGDEIF-HAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGP 575

Query: 175 VSWTTMIGG 183
             W T++G 
Sbjct: 576 AVWGTLLGA 584


>gi|125525521|gb|EAY73635.1| hypothetical protein OsI_01524 [Oryza sativa Indica Group]
          Length = 560

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 152/470 (32%), Positives = 256/470 (54%), Gaps = 19/470 (4%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M++  ++ N YT +  L AC        A+ +HA  +  G     ++ N+L+  Y ++ +
Sbjct: 60  MVAAGAAPNEYTLSSVLTACRGPCAPAMAMPLHAVAVRRGVDRMPYVVNALIDSYASLAE 119

Query: 61  -IFSAHQIFNSV-VFPDVVSWTTIISGLSKCGFHKEAIDMFC-----GIDVKPNANTLVS 113
            +  A ++F+++       SWT++I+G ++ G  +  + +F      G+++   A ++  
Sbjct: 120 GVVDARRLFDALGSGRTAASWTSMIAGYARWGQERTGLRLFKTMLKDGVELSTFACSIA- 178

Query: 114 VLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRN 173
            L AC+ ++   LG+ +H   ++   + N+ + N+++D Y  C  +     LF   P+RN
Sbjct: 179 -LHACTLVIDLCLGQQLHLQCIKKALDVNLAVVNSLIDMYCTCARILDARSLFDGTPERN 237

Query: 174 VVSWTTMIGGYAERGFCKE--AVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKY 231
           +++W TMI GY++   C    A+ +  EM      EPN  TL ++ SAC+ ++AL  GK 
Sbjct: 238 LITWNTMIAGYSQ---CDPLMALQLLLEMND----EPNCFTLTSITSACADLAALRCGKQ 290

Query: 232 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNG 291
           VH  +  R   S    +GNA+++MY KCG +  A  VF+ +  KDK SW+++I+G  MNG
Sbjct: 291 VHGAV-LRRSYSDDLQMGNALVDMYSKCGSITNAKNVFDRMGCKDKFSWTSMIAGYGMNG 349

Query: 292 CGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY 351
            G +A+QLFS MI   V PD V F++LIS+CSH GLVD+G   F++M   Y + P  + Y
Sbjct: 350 YGNEAVQLFSSMIHAGVHPDHVVFLSLISSCSHAGLVDEGWNFFRSMINEYNLQPNKEVY 409

Query: 352 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKG 411
             VV++  RAG L EA   I  MP   +  VWGALL A ++H N EM     + +     
Sbjct: 410 GSVVNLLARAGRLREALDLIDTMPFAPDEYVWGALLGASKMHNNVEMGRLAARKITEINP 469

Query: 412 VSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
             V  + ++++ +A   +W +    R  +R +G +K+ G SWIEV   ++
Sbjct: 470 DDVKNYIMLASIYAAGSKWGEYAFTRRSLRGIGSRKEAGISWIEVMDKMY 519



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 156/334 (46%), Gaps = 23/334 (6%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSS 120
           A  +F+ +   DVV+WT ++SG +  G  +EA+D+F         PN  TL SVL+AC  
Sbjct: 22  ARALFDEMPERDVVAWTAMLSGYASNGLRREALDVFRRMVAAGAAPNEYTLSSVLTACRG 81

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCG-SLASCGYLFVKM-PKRNVVSWT 178
             +  +   +HA ++R   +    + NA++D Y      +     LF  +   R   SWT
Sbjct: 82  PCAPAMAMPLHAVAVRRGVDRMPYVVNALIDSYASLAEGVVDARRLFDALGSGRTAASWT 141

Query: 179 TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST 238
           +MI GYA  G  +  + +F+ M K    E +       L AC+ +  L  G+ +H     
Sbjct: 142 SMIAGYARWGQERTGLRLFKTMLKDG-VELSTFACSIALHACTLVIDLCLGQQLH-LQCI 199

Query: 239 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQ 298
           +  L V+  V N++I+MY  C  +  A  +F+    ++ I+W+T+I+G +   C    L 
Sbjct: 200 KKALDVNLAVVNSLIDMYCTCARILDARSLFDGTPERNLITWNTMIAGYSQ--C--DPLM 255

Query: 299 LFSLMIINAVFPDDVTFIALISACS-----HGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353
              L++     P+  T  ++ SAC+       G    G +L ++ S        +Q    
Sbjct: 256 ALQLLLEMNDEPNCFTLTSITSACADLAALRCGKQVHGAVLRRSYSD------DLQMGNA 309

Query: 354 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           +VDMY + G +  A+     M  + ++S W +++
Sbjct: 310 LVDMYSKCGSITNAKNVFDRMGCKDKFS-WTSMI 342



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 86/154 (55%), Gaps = 4/154 (2%)

Query: 157 GSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNV 216
           G++     LF +MP+R+VV+WT M+ GYA  G  +EA+ VF+ M     A PNE TL +V
Sbjct: 17  GAVCHARALFDEMPERDVVAWTAMLSGYASNGLRREALDVFRRMVAAG-AAPNEYTLSSV 75

Query: 217 LSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGD-VGIAIQVFNMLAY- 274
           L+AC    A +    +H+ ++ R  +     V NA+I+ Y    + V  A ++F+ L   
Sbjct: 76  LTACRGPCAPAMAMPLHA-VAVRRGVDRMPYVVNALIDSYASLAEGVVDARRLFDALGSG 134

Query: 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
           +   SW+++I+G A  G  R  L+LF  M+ + V
Sbjct: 135 RTAASWTSMIAGYARWGQERTGLRLFKTMLKDGV 168


>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 755

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 155/475 (32%), Positives = 255/475 (53%), Gaps = 16/475 (3%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML   +  ++YT    L ACS     +   ++HA++I+Y    D  I NSL  FY   + 
Sbjct: 156 MLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRR 215

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           +  A + F  +   DV+SWT++IS     G    ++  F  +    +KPN  TL SVLSA
Sbjct: 216 LEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSA 275

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C  +++  LG  IH+ S++    ++I++ N+I+  Y++CG L     LF  M   N+V+W
Sbjct: 276 CCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTW 335

Query: 178 TTMIGGYAERGFCKE-----------AVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 226
             MI G+A+     E           A+++FQ++ ++   +P+  T  +VLS CS++ AL
Sbjct: 336 NAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSG-MKPDLFTFSSVLSVCSNLVAL 394

Query: 227 SFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
             G+ +H  I  +  +    +VG A+++MY KCG +  A + F  +  +  ISW+++I+G
Sbjct: 395 EQGEQIHGQI-IKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITG 453

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 346
            A +G  +QALQLF  M +  + P+ VTF+ ++SACSH GL D+ L  F+ M   Y I P
Sbjct: 454 FARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKP 513

Query: 347 QMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDL 406
            M H+AC++DMY R G +EEA   + +M  E   ++W  L+  CR H   ++     + L
Sbjct: 514 VMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQL 573

Query: 407 VNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           +  K   V T+  + N    A RW+D +K+R  ++   + K    SWI +   ++
Sbjct: 574 LKLKPKDVETYVSLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWSWISIKEKVY 628



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 205/415 (49%), Gaps = 40/415 (9%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           L+ C   +   +A  IH H+++ G   D+F+   L++ Y     + SAH++F+++   +V
Sbjct: 71  LQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNV 130

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAH 133
            +WTT+++G  +      A+ +F  +      P+  TL  VL+ACSSL S + GK +HA+
Sbjct: 131 NAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAY 190

Query: 134 SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
            ++   + +  + N++  FY +   L      F  + +++V+SWT++I    + G    +
Sbjct: 191 LIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARS 250

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVI 253
           +S F +M  +   +PNE TL +VLSAC  +  L  G  +HS +S +     S L+ N+++
Sbjct: 251 LSFFMDM-LSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHS-LSIKLGYGSSILIKNSIM 308

Query: 254 NMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG-----------LAMNGCGRQALQLFSL 302
            +Y+KCG +  A ++F  +   + ++W+ +I+G           +A +  G  AL +F  
Sbjct: 309 YLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQK 368

Query: 303 MIINAVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYEIVPQMQHY 351
           +  + + PD  TF +++S CS           HG ++  G++    + T           
Sbjct: 369 LYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGT----------- 417

Query: 352 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDL 406
             +V MY + G +++A     EMP     S W +++     H   +   ++ +D+
Sbjct: 418 -ALVSMYNKCGSIDKASKAFLEMPSRTMIS-WTSMITGFARHGLSQQALQLFEDM 470


>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
          Length = 551

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 149/470 (31%), Positives = 246/470 (52%), Gaps = 44/470 (9%)

Query: 30  LEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
           L +H HV+        ++   ++H     + +  A ++F  V  P++     +I   ++ 
Sbjct: 31  LRVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQN 90

Query: 90  GFHKEAIDMFCGIDVKPNAN----------TLVSVLSACSSLVSHKLGKAIHAHSLRNLN 139
             H++A+ ++  +   P +           T   +L AC    + +LGK +H H +R+  
Sbjct: 91  HQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGC 150

Query: 140 ENNIILDNAILDFYIRCGSLA-------------------------------SCGYLFVK 168
           +++ I+ N++++ Y R G LA                                   LF  
Sbjct: 151 DSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKATALFNS 210

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           MP + +V+WT M+ GY   G    AV  F+ M+ T+  EP++ ++V VL AC+ +  L  
Sbjct: 211 MPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQ-TEGFEPDDVSIVAVLPACAQLGTLEL 269

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
           G+++++Y   R+ +  S  + NA++ MY KCG +  A+Q+F+ +A KD ISWSTVI GLA
Sbjct: 270 GRWIYAYCK-RHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLA 328

Query: 289 MNGCGRQALQLFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 347
            +G   +A+ LF+ M     V P+ +TF+ L+SACS+ GLVD+GL  F  M+ VY + P 
Sbjct: 329 AHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPG 388

Query: 348 MQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLV 407
           ++HY CVVD+ GR+G +  A   +R+MP+ A+  VWG+LL+ACR H + +      + LV
Sbjct: 389 VEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERLV 448

Query: 408 NKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
             +   VG   +++N +A A RW D    R  IR   ++K  GCS IEV 
Sbjct: 449 ELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIEVG 498



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 168/362 (46%), Gaps = 44/362 (12%)

Query: 1   MLSCPSSY-------NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLH 53
           ML CP+S        + +T+   LKAC      +   ++H HV+  G      +QNSL+ 
Sbjct: 103 MLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIE 162

Query: 54  FYVTVKDIFSAHQIFNSVVFPDVVSW-------------------------------TTI 82
            Y    D+  AH++F+ +   DVVSW                               T +
Sbjct: 163 MYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAM 222

Query: 83  ISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLN 139
           +SG +  G +  A+D F  +  +   P+  ++V+VL AC+ L + +LG+ I+A+  R+  
Sbjct: 223 VSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGTLELGRWIYAYCKRHGM 282

Query: 140 ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQE 199
             +  + NA+++ Y +CG +     LF  M  ++V+SW+T+IGG A  G   EAV +F E
Sbjct: 283 LTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTE 342

Query: 200 MEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKC 259
           MEK  +  PN  T V +LSACS    +  G      ++  Y +         V+++  + 
Sbjct: 343 MEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRS 402

Query: 260 GDVGIAIQ-VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIAL 318
           G +  A+  V +M    D   W +++S    +G    A+     ++   + PDDV  + +
Sbjct: 403 GQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERLV--ELEPDDVGNLVM 460

Query: 319 IS 320
           ++
Sbjct: 461 LA 462


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 149/473 (31%), Positives = 252/473 (53%), Gaps = 30/473 (6%)

Query: 12   TFTQALKACSLAHPHQKALEIHAHVIEYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
            T    L ACS     +   EIH + +  G L  + F+  +L+  Y   K       +F+ 
Sbjct: 536  TLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDG 595

Query: 71   VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKL 126
            VV   V  W  +++G ++  F  +A+ +F  +    +  PNA T  SVL AC        
Sbjct: 596  VVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSD 655

Query: 127  GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
             + IH + ++     +  + NA++D Y R G +     +F +M KR++VSW TMI G   
Sbjct: 656  KEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIV 715

Query: 187  RGFCKEAVSVFQEMEKTKEAE-----------------PNEATLVNVLSACSSISALSFG 229
             G   +A+++  EM++ +  +                 PN  TL+ VL  C++++AL  G
Sbjct: 716  CGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKG 775

Query: 230  KYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAM 289
            K +H+Y + +  L++   VG+A+++MY KCG + +A +VF+ +  ++ I+W+ +I    M
Sbjct: 776  KEIHAY-AVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGM 834

Query: 290  NGCGRQALQLFSLMIINA------VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 343
            +G G +AL+LF +M          + P++VT+IA+ +ACSH G+VD+GL LF  M   + 
Sbjct: 835  HGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHG 894

Query: 344  IVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEA-EWSVWGALLNACRIHRNDEMFDRI 402
            + P+  HYAC+VD+ GR+G ++EA   I  MP    +   W +LL ACRIH++ E  +  
Sbjct: 895  VEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEIA 954

Query: 403  RQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
             + L   +      + LMSN ++ A  W+    +R +++ MG++K+ GCSWIE
Sbjct: 955  AKHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIE 1007



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/402 (28%), Positives = 193/402 (48%), Gaps = 37/402 (9%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHL--HDIFIQNSLLHFYVTVKDIFSAHQ 66
           +++ F   LKA +  H      +IHAHV ++GH     + + NSL++ Y    D+ +A Q
Sbjct: 329 DNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQ 388

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDM-----FCGIDVKPNANTLVSVLSACSSL 121
           +F+ +   D VSW ++I+ L  C F +  + +         +V P + TLVSV  ACS +
Sbjct: 389 VFDDIPDRDHVSWNSMIATL--CRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHV 446

Query: 122 VSH-KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
               +LGK +HA++LRN  +     +NA++  Y R G +     LF     +++VSW T+
Sbjct: 447 RGGVRLGKQVHAYTLRN-GDLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTV 505

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           I   ++    +EA+ ++  +       P+  TL +VL ACS +  L  G+ +H Y     
Sbjct: 506 ISSLSQNDRFEEAL-MYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNG 564

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
           DL  ++ VG A+++MY  C        VF+ +  +    W+ +++G A N    QAL+LF
Sbjct: 565 DLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLF 624

Query: 301 SLMIINAVF-PDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYEIVPQM 348
             MI  + F P+  TF +++ AC            HG +V +G    K +          
Sbjct: 625 VEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNA------- 677

Query: 349 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 390
                ++DMY R G +E ++     M  + +   W  ++  C
Sbjct: 678 -----LMDMYSRMGRVEISKTIFGRMN-KRDIVSWNTMITGC 713



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 177/370 (47%), Gaps = 40/370 (10%)

Query: 4   CPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFS 63
           CP   N  TF   L AC           IH ++++ G   D ++QN+L+  Y  +  +  
Sbjct: 634 CP---NATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEI 690

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---------------------CGI 102
           +  IF  +   D+VSW T+I+G   CG + +A+++                       G+
Sbjct: 691 SKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGV 750

Query: 103 DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC 162
             KPN+ TL++VL  C++L +   GK IHA++++     ++ + +A++D Y +CG L   
Sbjct: 751 PFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLA 810

Query: 163 GYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME----KTKEA-EPNEATLVNVL 217
             +F +MP RNV++W  +I  Y   G  +EA+ +F+ M       +E   PNE T + + 
Sbjct: 811 SRVFDQMPIRNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIF 870

Query: 218 SACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN-MLAYKD 276
           +ACS    +  G ++   +   + +         ++++  + G V  A ++ N M +  +
Sbjct: 871 AACSHSGMVDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLN 930

Query: 277 KI-SWSTVISGLAMNGCGRQALQLFSLMIINAVF---PDDVTFIALISAC-SHGGLVDQG 331
           K+ +WS+++    ++    Q+++ F  +    +F   P+  +   L+S   S  GL DQ 
Sbjct: 931 KVDAWSSLLGACRIH----QSVE-FGEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQA 985

Query: 332 LILFKAMSTV 341
           L + K M  +
Sbjct: 986 LGVRKKMKEM 995


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 155/459 (33%), Positives = 261/459 (56%), Gaps = 9/459 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFY---VTVKDIFSAH 65
           + +T +  + AC+         + H  V++ G   D+ +  SL+  Y   V    +  A 
Sbjct: 144 DRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDAR 203

Query: 66  QIFNSVVFPDVVSWTTIISG-LSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSL 121
           ++F+ +   +V+SWT II+G +   G  +EAI++F  +    VKPN  T  SVL AC++L
Sbjct: 204 KVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANL 263

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
               LG+ ++A  ++    +   + N+++  Y RCG++ +    F  + ++N+VS+ T++
Sbjct: 264 SDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIV 323

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
             YA+    +EA  +F E+E       N  T  ++LS  SSI A+  G+ +HS I  +  
Sbjct: 324 NAYAKSLNSEEAFELFNEIEGAGTG-VNAFTFASLLSGASSIGAIGKGEQIHSRI-LKSG 381

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
              +  + NA+I+MY +CG++  A QVFN +   + ISW+++I+G A +G   +AL+ F 
Sbjct: 382 FKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFH 441

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            M+   V P++VT+IA++SACSH GL+ +GL  FK+M   + IVP+M+HYACVVD+ GR+
Sbjct: 442 KMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRS 501

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421
           G LEEA   +  MP +A+  V    L ACR+H N ++     + ++ +       + L+S
Sbjct: 502 GHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLS 561

Query: 422 NTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           N  A A +WE+  +IR +++   L K+ GCSWIEV   +
Sbjct: 562 NLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKV 600



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 209/385 (54%), Gaps = 16/385 (4%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLH-DIFIQNSLLHFYVTVK 59
           ML C    N Y FT   +ACS          I   +++ G+   D+ +  +L+  +V   
Sbjct: 33  MLECGFYPNEYCFTGVFRACSNKENISLGKIIFGFLLKTGYFESDVCVGCALIDMFVKGN 92

Query: 60  -DIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVL 115
            D+ SA+++F+ +   +VV+WT +I+   + GF ++A+D+F  + +    P+  TL  V+
Sbjct: 93  GDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVV 152

Query: 116 SACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRC---GSLASCGYLFVKMPKR 172
           SAC+ +    LG+  H   +++  + ++ +  +++D Y +C   GS+     +F +MP  
Sbjct: 153 SACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVH 212

Query: 173 NVVSWTTMIGGYAERGFC-KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKY 231
           NV+SWT +I GY + G C +EA+ +F EM +  + +PN  T  +VL AC+++S +  G+ 
Sbjct: 213 NVMSWTAIITGYVQSGGCDREAIELFLEMVQG-QVKPNHFTFSSVLKACANLSDIWLGEQ 271

Query: 232 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNG 291
           V++ +  +  L+  N VGN++I+MY +CG++  A + F++L  K+ +S++T+++  A + 
Sbjct: 272 VYALV-VKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSL 330

Query: 292 CGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY 351
              +A +LF+ +       +  TF +L+S  S  G + +G    +  S + +   +   +
Sbjct: 331 NSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGE---QIHSRILKSGFKSNLH 387

Query: 352 AC--VVDMYGRAGLLEEAEAFIREM 374
            C  ++ MY R G +E A     EM
Sbjct: 388 ICNALISMYSRCGNIEAAFQVFNEM 412



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 115/391 (29%), Positives = 196/391 (50%), Gaps = 32/391 (8%)

Query: 75  DVVSWTTIISGLSKCGFHKEAIDMF-----CGIDVKPNANTLVSVLSACSSLVSHKLGKA 129
           D+VSW+ +IS  +      EAI  F     CG    PN      V  ACS+  +  LGK 
Sbjct: 6   DLVSWSALISCYANNEKAFEAISAFFDMLECGF--YPNEYCFTGVFRACSNKENISLGKI 63

Query: 130 IHAHSLRN-LNENNIILDNAILDFYIRC-GSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           I    L+    E+++ +  A++D +++  G L S   +F +MP RNVV+WT MI  + + 
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           GF ++AV +F +M  +    P+  TL  V+SAC+ +  LS G+  H  +  +  L +   
Sbjct: 124 GFSRDAVDLFLDMVLSGYV-PDRFTLSGVVSACAEMGLLSLGRQFHCLV-MKSGLDLDVC 181

Query: 248 VGNAVINMYVKC---GDVGIAIQVFNMLAYKDKISWSTVISGLAMN-GCGRQALQLFSLM 303
           VG ++++MY KC   G V  A +VF+ +   + +SW+ +I+G   + GC R+A++LF  M
Sbjct: 182 VGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEM 241

Query: 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA--CV----VDM 357
           +   V P+  TF +++ AC++   +  G         VY +V +M+  +  CV    + M
Sbjct: 242 VQGQVKPNHFTFSSVLKACANLSDIWLG-------EQVYALVVKMRLASINCVGNSLISM 294

Query: 358 YGRAGLLEEA-EAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDRIRQDLVNKKGVSVG 415
           Y R G +E A +AF  ++  E     +  ++NA  +   ++E F+   +      GV+  
Sbjct: 295 YSRCGNMENARKAF--DVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAF 352

Query: 416 TFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446
           TFA + +  +         +I   I + G K
Sbjct: 353 TFASLLSGASSIGAIGKGEQIHSRILKSGFK 383



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 109/223 (48%), Gaps = 7/223 (3%)

Query: 171 KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGK 230
           KR++VSW+ +I  YA      EA+S F +M +     PNE     V  ACS+   +S GK
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECG-FYPNEYCFTGVFRACSNKENISLGK 62

Query: 231 YVHSYISTRYDLSVSNLVGNAVINMYVKC-GDVGIAIQVFNMLAYKDKISWSTVISGLAM 289
            +  ++           VG A+I+M+VK  GD+  A +VF+ +  ++ ++W+ +I+    
Sbjct: 63  IIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQ 122

Query: 290 NGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQ 349
            G  R A+ LF  M+++   PD  T   ++SAC+  GL+  G   F  +     +   + 
Sbjct: 123 LGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGR-QFHCLVMKSGLDLDVC 181

Query: 350 HYACVVDMYGRA---GLLEEAEAFIREMPIEAEWSVWGALLNA 389
               +VDMY +    G +++A      MP+    S W A++  
Sbjct: 182 VGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMS-WTAIITG 223


>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 749

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 155/475 (32%), Positives = 255/475 (53%), Gaps = 16/475 (3%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML   +  ++YT    L ACS     +   ++HA++I+Y    D  I NSL  FY   + 
Sbjct: 150 MLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRR 209

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSA 117
           +  A + F  +   DV+SWT++IS     G    ++  F  +    +KPN  TL SVLSA
Sbjct: 210 LEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSA 269

Query: 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSW 177
           C  +++  LG  IH+ S++    ++I++ N+I+  Y++CG L     LF  M   N+V+W
Sbjct: 270 CCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTW 329

Query: 178 TTMIGGYAERGFCKE-----------AVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 226
             MI G+A+     E           A+++FQ++ ++   +P+  T  +VLS CS++ AL
Sbjct: 330 NAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSG-MKPDLFTFSSVLSVCSNLVAL 388

Query: 227 SFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286
             G+ +H  I  +  +    +VG A+++MY KCG +  A + F  +  +  ISW+++I+G
Sbjct: 389 EQGEQIHGQI-IKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITG 447

Query: 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 346
            A +G  +QALQLF  M +  + P+ VTF+ ++SACSH GL D+ L  F+ M   Y I P
Sbjct: 448 FARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKP 507

Query: 347 QMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDL 406
            M H+AC++DMY R G +EEA   + +M  E   ++W  L+  CR H   ++     + L
Sbjct: 508 VMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQL 567

Query: 407 VNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           +  K   V T+  + N    A RW+D +K+R  ++   + K    SWI +   ++
Sbjct: 568 LKLKPKDVETYVSLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWSWISIKEKVY 622



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 205/415 (49%), Gaps = 40/415 (9%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV 76
           L+ C   +   +A  IH H+++ G   D+F+   L++ Y     + SAH++F+++   +V
Sbjct: 65  LQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNV 124

Query: 77  VSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAH 133
            +WTT+++G  +      A+ +F  +      P+  TL  VL+ACSSL S + GK +HA+
Sbjct: 125 NAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAY 184

Query: 134 SLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEA 193
            ++   + +  + N++  FY +   L      F  + +++V+SWT++I    + G    +
Sbjct: 185 LIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARS 244

Query: 194 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVI 253
           +S F +M  +   +PNE TL +VLSAC  +  L  G  +HS +S +     S L+ N+++
Sbjct: 245 LSFFMDM-LSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHS-LSIKLGYGSSILIKNSIM 302

Query: 254 NMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG-----------LAMNGCGRQALQLFSL 302
            +Y+KCG +  A ++F  +   + ++W+ +I+G           +A +  G  AL +F  
Sbjct: 303 YLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQK 362

Query: 303 MIINAVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYEIVPQMQHY 351
           +  + + PD  TF +++S CS           HG ++  G++    + T           
Sbjct: 363 LYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTA---------- 412

Query: 352 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDL 406
             +V MY + G +++A     EMP     S W +++     H   +   ++ +D+
Sbjct: 413 --LVSMYNKCGSIDKASKAFLEMPSRTMIS-WTSMITGFARHGLSQQALQLFEDM 464


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 153/467 (32%), Positives = 255/467 (54%), Gaps = 42/467 (8%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYV--TVKDIFSAHQIFNSVVFPDVVSWTTIISGLS- 87
           + HAH+I  G +      N LL   +  +   +  AHQ+F+ +  PDV  + T+I   + 
Sbjct: 33  QTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNTMIKAHAV 92

Query: 88  -KCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNI 143
                H         + V    PN  T V V  AC + +    G+ I  H+++   E+N+
Sbjct: 93  IPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNL 152

Query: 144 ILDNAILDFY-------------------------------IRCGSLASCGYLFVKMPKR 172
            + NA++  Y                               +  G +     +F +M +R
Sbjct: 153 FVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSER 212

Query: 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYV 232
           +VVSWTT+I GY + G  KEA+ +F EM +T    PNE TL + L+AC+++ AL  G+++
Sbjct: 213 DVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPP-PNEFTLASALAACANLVALDQGRWI 271

Query: 233 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF-NMLAYKDKI-SWSTVISGLAMN 290
           H YI  + ++ ++  +  ++++MY KCG++  A +VF +    K K+  W+ +I G AM+
Sbjct: 272 HVYID-KSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMH 330

Query: 291 GCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQH 350
           G  ++A+ LF  M +  V P+ VTF+AL++ACSHG LV++G   FK+M++ Y I P+++H
Sbjct: 331 GKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEH 390

Query: 351 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKK 410
           Y C+VD+ GR+GLL+EAE  +  MP+  + ++WGALL ACRIH++ E   RI + +    
Sbjct: 391 YGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELD 450

Query: 411 GVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
              +G   L++N ++ + +W++   +R +I   G KK  GCS IE+N
Sbjct: 451 SDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELN 497



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 159/356 (44%), Gaps = 43/356 (12%)

Query: 105 KP-NANTL-VSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRC--GSLA 160
           KP N+N L +  L +C S+   K     HAH +      + I  N +L   I    GSL+
Sbjct: 10  KPLNSNQLQLFSLESCKSMNQIK---QTHAHLITTGLILHPITANKLLKVLIASSFGSLS 66

Query: 161 SCGYLFVKMPKRNVVSWTTMIGGYAE-RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
               LF ++PK +V  + TMI  +A        ++ +F  M +     PN  T V V  A
Sbjct: 67  YAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKA 126

Query: 220 CSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINM------------------------ 255
           C +   +  G+ +  + + +  L  +  V NA+I M                        
Sbjct: 127 CGNGLGVLEGEQIRVH-AIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYS 185

Query: 256 -------YVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
                  YV  G++G A ++F+ ++ +D +SW+T+I+G    GC ++AL LF  M+    
Sbjct: 186 WNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGP 245

Query: 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE-EA 367
            P++ T  + ++AC++   +DQG  +   +    EI    +  A ++DMY + G ++  A
Sbjct: 246 PPNEFTLASALAACANLVALDQGRWIHVYIDKS-EIKMNERLLASLLDMYAKCGEIDFAA 304

Query: 368 EAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDRIRQDLVNKKGVSVGTFALMSN 422
           + F  E  ++ +   W A++    +H ++ E  D   Q  V K   +  TF  + N
Sbjct: 305 KVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLN 360


>gi|357131661|ref|XP_003567454.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220,
           mitochondrial-like [Brachypodium distachyon]
          Length = 924

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 147/445 (33%), Positives = 243/445 (54%), Gaps = 10/445 (2%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           T    + +CS     +    +H+ V++YG    + + N+L+H Y+   D   A  +  S+
Sbjct: 479 TILAVIPSCSCPEDLRFGKAVHSFVLKYGFASGVSVVNALMHMYICCGDSLVAFTLLGSI 538

Query: 72  V-FPDVVSWTTIISGLSKCGFHKEAIDMF----CGIDVKPNANTLVSVLSACSSLVSHKL 126
           +   D++SW T + G  + G H+ A++ F      + + P++ TLVSVLSAC +L    L
Sbjct: 539 MPVSDIISWNTAVVGCVQNGLHRGALEAFQFMHSSLPLNPDSITLVSVLSACGTLKLQSL 598

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           GK+IH+ +L+ L   N+ + NA+L  Y R     S   +F  +  RN+ SW  M+ G+A+
Sbjct: 599 GKSIHSMALKRLLVFNLRVKNALLTMYFRFADTESAELIFYSLGDRNLCSWNCMVSGFAQ 658

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246
               + A+  +Q+MEK     PNE   V+++ AC+ +  +  GK +H ++  + DL  + 
Sbjct: 659 NNDGRRALQFYQKMEKFV---PNEMCTVSIICACTQLRDVRHGKSIHGHV-VKSDLQNNV 714

Query: 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306
            +  ++++MY KCG + IA++VF     K    W+++IS    +G G ++++LF  MI +
Sbjct: 715 FLSASLVDMYSKCGRLDIAVRVFESSTEKSIACWNSMISAFGFHGHGLRSIELFCSMIHS 774

Query: 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366
            +     TFIAL+SACSH GL D+GL  +  MS  + I P  +H+ C+VDM GRAG L+E
Sbjct: 775 GMKATRSTFIALLSACSHAGLTDEGLKYYNLMSEKFGITPTPEHHVCIVDMLGRAGRLQE 834

Query: 367 AEAFIREMPIEAEW-SVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           A  F+  +P   E   VWGALL+AC       M + I + L+  +  + G +  +SN +A
Sbjct: 835 AHKFVESLPKSKEAHGVWGALLSACSNKSELRMGEAIARQLLCLEPENSGYYVTISNLYA 894

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTG 450
             D W    ++RD ++   L K  G
Sbjct: 895 YQDMWGGAVQVRDILQDKRLMKPHG 919



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 156/311 (50%), Gaps = 13/311 (4%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVK-----DIFSAHQIFNSVVFPDVVSWTTIISGL 86
           +H   ++ G + D  ++ SLL  Y         D  +A  +F+    PDV+ W  +I  L
Sbjct: 85  LHCAALKSGAVLDPPVRTSLLAAYARCPSGGDHDARAALVLFHEAEDPDVILWNAVIGAL 144

Query: 87  SKCGFHKEAIDMF---CGIDVKP-NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN 142
           ++     +A+ +F    G+  +  ++ T+V +LS  S      LG A+HA +++   + +
Sbjct: 145 TRACRLGDAVALFRRMAGVRGEAFDSTTVVVMLSGASRAGELDLGMALHAAAVKRRLDTD 204

Query: 143 IILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202
           + L NA++D Y +CGS      +F  MP  +  SW ++ GG    G  + +   F+EM +
Sbjct: 205 MNLWNALVDMYAKCGSFCDSEAVFWSMPCWDTASWNSVTGGSTFNGLSEVSACYFREMIR 264

Query: 203 TKEAEPNEATLVNVLSACSSISAL-SFGKYVHSYI-STRYDLSVSNLVGNAVINMYVKCG 260
               + +E TL +V+SA S    L SFG+ VH  I    Y+ +    V N++I  Y + G
Sbjct: 265 LA-VQADEVTLSSVISASSRAEGLFSFGESVHGCIVKLGYEDTAPCSVANSLITFYFEFG 323

Query: 261 DVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALIS 320
               A +VF  +  K+ +SW+ +I GL  N    +AL +F  M ++   PD  T +A+I 
Sbjct: 324 FPEDAEKVFMRIFKKNHVSWNVMIKGLMENEKAGEALAVFREM-LSECQPDFATLVAVIL 382

Query: 321 ACSHGGLVDQG 331
           +C   GL+ +G
Sbjct: 383 SCGDQGLLCEG 393



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 172/368 (46%), Gaps = 25/368 (6%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           +++  T    L   S A      + +HA  ++     D+ + N+L+  Y        +  
Sbjct: 167 AFDSTTVVVMLSGASRAGELDLGMALHAAAVKRRLDTDMNLWNALVDMYAKCGSFCDSEA 226

Query: 67  IFNSVVFPDVVSWTTIISG--------LSKCGFHKEAIDMFCGIDVKPNANTLVSVLSAC 118
           +F S+   D  SW ++  G        +S C F +E I +     V+ +  TL SV+SA 
Sbjct: 227 VFWSMPCWDTASWNSVTGGSTFNGLSEVSACYF-REMIRL----AVQADEVTLSSVISAS 281

Query: 119 SSLVS-HKLGKAIHAHSLRNLNENNII--LDNAILDFYIRCGSLASCGYLFVKMPKRNVV 175
           S        G+++H   ++   E+     + N+++ FY   G       +F+++ K+N V
Sbjct: 282 SRAEGLFSFGESVHGCIVKLGYEDTAPCSVANSLITFYFEFGFPEDAEKVFMRIFKKNHV 341

Query: 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235
           SW  MI G  E     EA++VF+EM    E +P+ ATLV V+ +C     L  GK +H Y
Sbjct: 342 SWNVMIKGLMENEKAGEALAVFREM--LSECQPDFATLVAVILSCGDQGLLCEGKAIHGY 399

Query: 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ 295
           I+ +    V + +GN+++ +Y+KC D   A  +F  +  +D ISW+T++SG + +   R+
Sbjct: 400 ITRKCLFHVESSLGNSLLGLYMKCDDAYTANLLFRTMPIRDLISWNTMLSGYSRDDSLRE 459

Query: 296 ALQ-LFSLMIINAVFPDDVTFIALISACS------HGGLVDQGLILFKAMSTVYEIVPQM 348
             Q +F  ++   +     T +A+I +CS       G  V   ++ +   S V  +   M
Sbjct: 460 EAQAMFRELLSEGLSCTMTTILAVIPSCSCPEDLRFGKAVHSFVLKYGFASGVSVVNALM 519

Query: 349 QHYACVVD 356
             Y C  D
Sbjct: 520 HMYICCGD 527



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 123/282 (43%), Gaps = 13/282 (4%)

Query: 102 IDVKPNANTLVSVLSACSSLVSHKLG--KAIHAHSLRNLNENNIILDNAILDFYIRCGS- 158
           +D  P      S++ A     +   G  +++H  +L++    +  +  ++L  Y RC S 
Sbjct: 55  LDGTPRGTRASSIVRALREYDAPLAGSVESLHCAALKSGAVLDPPVRTSLLAAYARCPSG 114

Query: 159 ----LASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214
                 +   LF +    +V+ W  +IG         +AV++F+ M   +    +  T+V
Sbjct: 115 GDHDARAALVLFHEAEDPDVILWNAVIGALTRACRLGDAVALFRRMAGVRGEAFDSTTVV 174

Query: 215 NVLSACSSISALSFGKYVH-SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 273
            +LS  S    L  G  +H + +  R D  ++  + NA+++MY KCG    +  VF  + 
Sbjct: 175 VMLSGASRAGELDLGMALHAAAVKRRLDTDMN--LWNALVDMYAKCGSFCDSEAVFWSMP 232

Query: 274 YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG-GLVDQGL 332
             D  SW++V  G   NG    +   F  MI  AV  D+VT  ++ISA S   GL   G 
Sbjct: 233 CWDTASWNSVTGGSTFNGLSEVSACYFREMIRLAVQADEVTLSSVISASSRAEGLFSFGE 292

Query: 333 ILFKAMSTV-YEIVPQMQHYACVVDMYGRAGLLEEAE-AFIR 372
            +   +  + YE          ++  Y   G  E+AE  F+R
Sbjct: 293 SVHGCIVKLGYEDTAPCSVANSLITFYFEFGFPEDAEKVFMR 334



 Score = 42.7 bits (99), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 9/142 (6%)

Query: 248 VGNAVINMYVKCG-----DVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
           V  +++  Y +C      D   A+ +F+     D I W+ VI  L        A+ LF  
Sbjct: 100 VRTSLLAAYARCPSGGDHDARAALVLFHEAEDPDVILWNAVIGALTRACRLGDAVALFRR 159

Query: 303 MI-INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
           M  +     D  T + ++S  S  G +D G+ L  A +    +   M  +  +VDMY + 
Sbjct: 160 MAGVRGEAFDSTTVVVMLSGASRAGELDLGMAL-HAAAVKRRLDTDMNLWNALVDMYAKC 218

Query: 362 GLLEEAEAFIREMPI--EAEWS 381
           G   ++EA    MP    A W+
Sbjct: 219 GSFCDSEAVFWSMPCWDTASWN 240


>gi|449467271|ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic-like [Cucumis sativus]
 gi|449530724|ref|XP_004172343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic-like [Cucumis sativus]
          Length = 543

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 155/466 (33%), Positives = 255/466 (54%), Gaps = 38/466 (8%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVT-VKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
           + HAH+I+ G   + F  + +L F  + + ++  A+ +F  +  P++ SW T+I G S+ 
Sbjct: 42  QFHAHLIKSGQAIESFAASRILAFCASPLGNMDYAYLVFLQMQNPNLFSWNTVIRGFSQS 101

Query: 90  GFHKEA----IDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
              + A    IDM     V+P   T  S+  A S L     G  +H   ++   + +  +
Sbjct: 102 SNPQIALYLFIDMLVSSQVEPQRLTYPSIFKAYSQLGLAHDGAQLHGRIIKLGLQFDPFI 161

Query: 146 DNAILDFYIRCG-------------------------SLASCG------YLFVKMPKRNV 174
            N IL  Y   G                          LA CG       LF KMP +N 
Sbjct: 162 RNTILYMYATGGFLSEARRIFNQEMEFDVVSWNSMILGLAKCGEIDESRKLFDKMPVKNP 221

Query: 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
           +SW +MIGGY   G  KEA+ +F +M++ +  +P+E T+V++L+A + I AL  G ++H 
Sbjct: 222 ISWNSMIGGYVRNGMFKEALKLFIKMQEER-IQPSEFTMVSLLNASAQIGALRQGVWIHE 280

Query: 235 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGR 294
           YI  + +L ++ +V  A+I+MY KCG +G A+QVF  +  +   SW+++I GLA+NGC +
Sbjct: 281 YIK-KNNLQLNAIVVTAIIDMYCKCGSIGNALQVFEKIPCRSLSSWNSMIFGLAVNGCEK 339

Query: 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354
           +A+ +F ++  +++ PD ++F+A+++AC+HG +VD+G+  F  M   Y I P ++HY  +
Sbjct: 340 EAILVFKMLESSSLKPDCISFMAVLTACNHGAMVDEGMEFFSRMKNTYRIEPSIKHYNLM 399

Query: 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414
           VDM  RAG LEEAE FI+ MPIE +  +WG LL+ACRI+ N EM  R  + +        
Sbjct: 400 VDMISRAGFLEEAEQFIKTMPIEKDAIIWGCLLSACRIYGNTEMAKRAAEKVNELDPEET 459

Query: 415 GTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
             + LM+N  A  + +    + R  +R   ++K+ G S+IEV+  +
Sbjct: 460 MGYVLMANIHAWGNNFVGAMEKRVAMRMKKVEKEPGGSFIEVDEEV 505



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 157/322 (48%), Gaps = 39/322 (12%)

Query: 5   PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSA 64
           P    + +  +A     LAH      ++H  +I+ G   D FI+N++L+ Y T   +  A
Sbjct: 122 PQRLTYPSIFKAYSQLGLAH---DGAQLHGRIIKLGLQFDPFIRNTILYMYATGGFLSEA 178

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKC-------------------------------GFHK 93
            +IFN  +  DVVSW ++I GL+KC                               G  K
Sbjct: 179 RRIFNQEMEFDVVSWNSMILGLAKCGEIDESRKLFDKMPVKNPISWNSMIGGYVRNGMFK 238

Query: 94  EAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAIL 150
           EA+ +F  +    ++P+  T+VS+L+A + + + + G  IH +  +N  + N I+  AI+
Sbjct: 239 EALKLFIKMQEERIQPSEFTMVSLLNASAQIGALRQGVWIHEYIKKNNLQLNAIVVTAII 298

Query: 151 DFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNE 210
           D Y +CGS+ +   +F K+P R++ SW +MI G A  G  KEA+ VF+ +E +   +P+ 
Sbjct: 299 DMYCKCGSIGNALQVFEKIPCRSLSSWNSMIFGLAVNGCEKEAILVFKMLESSS-LKPDC 357

Query: 211 ATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VF 269
            + + VL+AC+  + +  G    S +   Y +  S    N +++M  + G +  A Q + 
Sbjct: 358 ISFMAVLTACNHGAMVDEGMEFFSRMKNTYRIEPSIKHYNLMVDMISRAGFLEEAEQFIK 417

Query: 270 NMLAYKDKISWSTVISGLAMNG 291
            M   KD I W  ++S   + G
Sbjct: 418 TMPIEKDAIIWGCLLSACRIYG 439



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 96/220 (43%), Gaps = 17/220 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + +T    L A +     ++ + IH ++ +     +  +  +++  Y     I +A Q+F
Sbjct: 255 SEFTMVSLLNASAQIGALRQGVWIHEYIKKNNLQLNAIVVTAIIDMYCKCGSIGNALQVF 314

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHK 125
             +    + SW ++I GL+  G  KEAI +F  ++   +KP+  + ++VL+AC+      
Sbjct: 315 EKIPCRSLSSWNSMIFGLAVNGCEKEAILVFKMLESSSLKPDCISFMAVLTACNHGAMVD 374

Query: 126 LGKAIHAHSLRNLN--ENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIG 182
            G    +  ++N    E +I   N ++D   R G L         MP +++ + W  ++ 
Sbjct: 375 EGMEFFSR-MKNTYRIEPSIKHYNLMVDMISRAGFLEEAEQFIKTMPIEKDAIIWGCLLS 433

Query: 183 G---YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219
               Y      K A       EK  E +P E T+  VL A
Sbjct: 434 ACRIYGNTEMAKRAA------EKVNELDPEE-TMGYVLMA 466


>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 600

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 140/451 (31%), Positives = 248/451 (54%), Gaps = 39/451 (8%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           YTF+  +KAC+     +    +H H+ + G    +F+Q +L+ FY  ++ +  A ++F+ 
Sbjct: 139 YTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDE 198

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAI 130
           +   D  +WT ++S L++ G    A  +F                               
Sbjct: 199 MCERDAFAWTAMLSALARVGDMDSARKLF------------------------------- 227

Query: 131 HAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFC 190
                  + E N    N ++D Y R G++ S   LF +MP ++++SWTTMI  Y++    
Sbjct: 228 -----EEMPERNTATWNTMIDGYTRLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQY 282

Query: 191 KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGN 250
           ++A++++ EM +     P+E T+  V SAC+ I AL  GK +H Y+ ++  L++   +G+
Sbjct: 283 QDALAIYSEM-RLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQ-GLNLDVYIGS 340

Query: 251 AVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP 310
           A+++MY KCG + +++ +F  L  K+   W+ VI GLA++G   +AL++F++M    + P
Sbjct: 341 ALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMP 400

Query: 311 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAF 370
           + VTFI+++SAC+H GLVD+G   F +M+  Y+I P ++HY C+VDM  ++G L EA   
Sbjct: 401 NGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALEL 460

Query: 371 IREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRW 430
           I+ M  E    +WGALLN C++H N E+ +   + L+  + ++ G + L+ + +A    W
Sbjct: 461 IKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQLMILEPMNSGHYNLLVSMYAEEKDW 520

Query: 431 EDTNKIRDEIRRMGLKKK-TGCSWIEVNPSI 460
            +   IR  ++  G++KK  G SWIE+  +I
Sbjct: 521 MEVAHIRSMMKEKGVEKKYPGSSWIELEGTI 551


>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
          Length = 716

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 144/448 (32%), Positives = 252/448 (56%), Gaps = 7/448 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YT    + ACS      +   +H  VI+ G + + FI  +LL  YV   ++  A  +F
Sbjct: 265 SEYTIATVITACSALFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELDHARCVF 324

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG---IDVKPNANTLVSVLSACSSLVSHK 125
           + + + D+V WTT+I G ++ G   +A+ +F      ++ PN+ T  +VLSA + L    
Sbjct: 325 DELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQLRDLS 384

Query: 126 LGKAIHAHSLR-NLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           LGK+IH  +++  L E N++  NA++D Y +C +++    +F ++  ++VV+W +MI GY
Sbjct: 385 LGKSIHGLAVKLGLVEYNVV-GNALVDMYAKCQAVSEADRIFGRISNKDVVAWNSMISGY 443

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           AE     +A+ +F++M   + + P+  ++VN LSA   +  L  GK +H Y + ++    
Sbjct: 444 AENNMGDDALMLFKQMS-LQGSSPDAISVVNALSASVCLGDLLIGKSIHGY-AVKHAFVS 501

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           +  V  A++N+Y KCGD+  A +VF+ +  ++ ++W  +I G  M G    ++ LF  M+
Sbjct: 502 NIYVDTALLNLYNKCGDLLSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIHLFGEML 561

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
            + V+P+D+ F +++S CSH G+V  G   F +M+  + I P M+HYAC+VD+  RAG L
Sbjct: 562 KDGVYPNDIAFTSILSTCSHSGMVTAGKRYFDSMAQHFNITPSMKHYACMVDVLARAGNL 621

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           E+A  FI  MP++A+ SVWGA L+ C +H   +  +   + ++         + L+SN +
Sbjct: 622 EDALEFIDNMPMQADTSVWGAFLHGCELHSRLQFAEEAIKRMMVLHPERPDLYVLISNLY 681

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCS 452
                W+ +  IR  ++  GL K  GCS
Sbjct: 682 TSNGMWDKSLAIRRWMQEKGLVKLPGCS 709



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 103/321 (32%), Positives = 178/321 (55%), Gaps = 6/321 (1%)

Query: 4   CPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFS 63
           CP + + +  + ALKAC  +  +     +H   I+ G   D F+ NSL+  Y   +D+  
Sbjct: 160 CPEAQDDFVLSLALKACIRSAEYSYGRSLHCDAIKVGGA-DGFVMNSLVDMYAKAEDLEC 218

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 120
           A ++F  +   +VVSWT++ISG  + GF  + + +F  +   +V P+  T+ +V++ACS+
Sbjct: 219 ARKVFERIPDRNVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVPPSEYTIATVITACSA 278

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           L     G+ +H   ++    +N  +  A+LD Y++CG L     +F ++   ++V WTTM
Sbjct: 279 LFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELDHARCVFDELSYIDLVLWTTM 338

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           I GY + G   +A+ +F + ++     PN  T   VLSA + +  LS GK +H  ++ + 
Sbjct: 339 IVGYTQNGNPLDALRLFLD-KRFANIAPNSVTTATVLSASAQLRDLSLGKSIHG-LAVKL 396

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
            L   N+VGNA+++MY KC  V  A ++F  ++ KD ++W+++ISG A N  G  AL LF
Sbjct: 397 GLVEYNVVGNALVDMYAKCQAVSEADRIFGRISNKDVVAWNSMISGYAENNMGDDALMLF 456

Query: 301 SLMIINAVFPDDVTFIALISA 321
             M +    PD ++ +  +SA
Sbjct: 457 KQMSLQGSSPDAISVVNALSA 477


>gi|449517497|ref|XP_004165782.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Cucumis sativus]
          Length = 603

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 148/439 (33%), Positives = 245/439 (55%), Gaps = 8/439 (1%)

Query: 29  ALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           ++  H+  ++ G L++    N L++ YV  + I +AHQ+F+ +  P+VVSWT++++G   
Sbjct: 43  SISTHSIALKLGFLNNTVNVNHLINCYVRFRSIATAHQLFDEMPNPNVVSWTSLMAGYVD 102

Query: 89  CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
            G    A+ +F  +    V PN  T  + + ACS L + + G+  HAH        NI++
Sbjct: 103 NGQPSTALFLFGEMLRSPVVPNDFTFATAIKACSILSNLRHGEMFHAHVEIFGYGGNIVV 162

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            ++++D Y +C  +     +F  M  +N+VSWT+MI  YA+     EA+ VF+E      
Sbjct: 163 CSSLIDMYGKCNDVVKARGVFNSMSCKNIVSWTSMIAAYAQNAHGDEALKVFREFTSLSS 222

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVH-SYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
             PN   L +V+SAC+S+  L  GK +H + IS   D   S +V + +++MY KCG +  
Sbjct: 223 EHPNPYMLASVISACASLGRLVSGKVMHGAAISLGCD--SSEVVASVLVDMYAKCGSLDY 280

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
           + +VFN ++    I ++++I   A  G GR++LQLF  M+   + P+ +T + ++ ACSH
Sbjct: 281 SDKVFNRISNPSVIPYTSMIVSTAKYGFGRKSLQLFEEMVRKGLKPNHITLVGVLHACSH 340

Query: 325 GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS--V 382
            GL ++GL    +M   Y I+P+ +HY CVVDM  R G L++A    + M +  +    +
Sbjct: 341 SGLPNEGLYYLTSMYEKYGIMPETKHYTCVVDMLARVGELDKAFDLAKSMDVAPDDKALL 400

Query: 383 WGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442
           WGALL+A R H   ++     Q LVN      G +  +SN +A A   E  +K+R E++R
Sbjct: 401 WGALLSASRCHGRVDIAAEACQQLVNSNRQVAGAYVTLSNVYASAGDMEKAHKLRVEMKR 460

Query: 443 MGLKKKTGCSWIEVNPSIF 461
            G+ K+ GCSWIE+  S +
Sbjct: 461 TGVHKEPGCSWIEIKDSSY 479



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 155/298 (52%), Gaps = 8/298 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML  P   N +TF  A+KACS+    +     HAHV  +G+  +I + +SL+  Y    D
Sbjct: 116 MLRSPVVPNDFTFATAIKACSILSNLRHGEMFHAHVEIFGYGGNIVVCSSLIDMYGKCND 175

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLS 116
           +  A  +FNS+   ++VSWT++I+  ++     EA+ +F          PN   L SV+S
Sbjct: 176 VVKARGVFNSMSCKNIVSWTSMIAAYAQNAHGDEALKVFREFTSLSSEHPNPYMLASVIS 235

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
           AC+SL     GK +H  ++    +++ ++ + ++D Y +CGSL     +F ++   +V+ 
Sbjct: 236 ACASLGRLVSGKVMHGAAISLGCDSSEVVASVLVDMYAKCGSLDYSDKVFNRISNPSVIP 295

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           +T+MI   A+ GF ++++ +F+EM + K  +PN  TLV VL ACS     + G Y  + +
Sbjct: 296 YTSMIVSTAKYGFGRKSLQLFEEMVR-KGLKPNHITLVGVLHACSHSGLPNEGLYYLTSM 354

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML--AYKDK-ISWSTVISGLAMNG 291
             +Y +         V++M  + G++  A  +   +  A  DK + W  ++S    +G
Sbjct: 355 YEKYGIMPETKHYTCVVDMLARVGELDKAFDLAKSMDVAPDDKALLWGALLSASRCHG 412


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 155/524 (29%), Positives = 265/524 (50%), Gaps = 75/524 (14%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFN- 69
           +      K C+     +   +IH      G   D F+Q SL H Y+    +  A ++F+ 
Sbjct: 117 HVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDR 176

Query: 70  ----------------------------------SVVFPDVVSWTTIISGLSKCGFHKEA 95
                                             S + P++VSW  I+SG ++ G+HKEA
Sbjct: 177 MSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEA 236

Query: 96  IDMFCG---IDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDF 152
           + MF     +   P+  T+ SVL +     +  +G+ IH + ++     +  + +A+LD 
Sbjct: 237 VIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDM 296

Query: 153 YIRCG-----------------------------------SLASCGYLFVKMPKRNVVSW 177
           Y + G                                   +L   G    +  + NVVSW
Sbjct: 297 YGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSW 356

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
           T++I G A+ G   EA+ +F+EM+     +PN  T+ ++L AC +I+AL  G+  H + +
Sbjct: 357 TSIIAGCAQNGKDIEALELFREMQ-VAGVKPNRVTIPSMLPACGNIAALGHGRSTHGF-A 414

Query: 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQAL 297
            R  L     VG+A+I+MY KCG + ++  VFNM+  K+ + W+++++G +M+G  ++ +
Sbjct: 415 VRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVM 474

Query: 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357
            +F  ++   + PD ++F +L+SAC   GL D+G   F  MS  Y I P+++HY+C+V++
Sbjct: 475 SIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNL 534

Query: 358 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTF 417
            GRAG L+EA   I+E+P E +  VWGALLN+CR+  N ++ +   Q L + +  + GT+
Sbjct: 535 LGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDLAEIAAQKLFHLEPENPGTY 594

Query: 418 ALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
            LMSN +A    W + + IR+++  +GLKK  GCSWI+V   ++
Sbjct: 595 VLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNKVY 638



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/438 (22%), Positives = 194/438 (44%), Gaps = 75/438 (17%)

Query: 28  KALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS 87
           K  + HA +++ G  +D +I   L+  Y        A  I  S+  P V S++++I  L+
Sbjct: 33  KTTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALT 92

Query: 88  KCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144
           K     ++I +F  +    + P+ + L ++   C+ L + K GK IH  +  +  + +  
Sbjct: 93  KAKLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAF 152

Query: 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT- 203
           +  ++   Y+RCG +     +F +M +++VV+ + ++ GYA +G  +E V +  EMEK+ 
Sbjct: 153 VQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSG 212

Query: 204 ---------------------KEAE------------PNEATLVNVLSACSSISALSFGK 230
                                KEA             P++ T+ +VL +      L+ G+
Sbjct: 213 IEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGR 272

Query: 231 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA----------------- 273
            +H Y+  +  L     V +A+++MY K G V   I++F+                    
Sbjct: 273 QIHGYV-IKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRN 331

Query: 274 ------------YKDK------ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTF 315
                       +K++      +SW+++I+G A NG   +AL+LF  M +  V P+ VT 
Sbjct: 332 GLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTI 391

Query: 316 IALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP 375
            +++ AC +   +  G         V+ ++  +   + ++DMY + G ++ ++     MP
Sbjct: 392 PSMLPACGNIAALGHGRSTHGFAVRVH-LLDDVHVGSALIDMYAKCGRIKMSQIVFNMMP 450

Query: 376 IEAEWSVWGALLNACRIH 393
            +     W +L+N   +H
Sbjct: 451 TK-NLVCWNSLMNGYSMH 467



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 3/116 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  T    L AC            H   +    L D+ + ++L+  Y     I  +  +F
Sbjct: 387 NRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVF 446

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSL 121
           N +   ++V W ++++G S  G  KE + +F  +    +KP+  +  S+LSAC  +
Sbjct: 447 NMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQV 502


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 142/411 (34%), Positives = 238/411 (57%), Gaps = 6/411 (1%)

Query: 49  NSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVK 105
           N L++ YV   D+ +A ++F+ +    + +W  +I+GL +  F++E + +F    G+   
Sbjct: 114 NILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFS 173

Query: 106 PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYL 165
           P+  TL SV S  + L S  +G+ IH ++++   E ++++++++   Y+R G L     +
Sbjct: 174 PDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIV 233

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
              MP RN+V+W T+I G A+ G C E V    +M K     PN+ T V VLS+CS ++ 
Sbjct: 234 IRSMPVRNLVAWNTLIMGNAQNG-CPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAI 292

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285
              G+ +H+  + +   S    V +++I+MY KCG +G A + F+    +D++ WS++IS
Sbjct: 293 RGQGQQIHAE-AIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMIS 351

Query: 286 GLAMNGCGRQALQLFSLMIINAVFP-DDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 344
               +G G +A++LF+ M        ++V F+ L+ ACSH GL D+GL LF  M   Y  
Sbjct: 352 AYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGF 411

Query: 345 VPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQ 404
            P ++HY CVVD+ GRAG L++AEA IR MPI+ +  +W  LL+AC IH+N EM  R+ +
Sbjct: 412 KPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFK 471

Query: 405 DLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
           +++         + L++N  A A RW D +++R  +R   +KK+ G SW E
Sbjct: 472 EILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFE 522



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 164/363 (45%), Gaps = 35/363 (9%)

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
           +SVV P  V   T I+ L   G  +EA   F  +++  N +     + +C++  S   GK
Sbjct: 6   SSVVRPLSVDPATAIATLCSKGNLREAFQRF-RLNIFTNTSLFTPFIQSCTTRQSLPSGK 64

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
            +H   + +   ++  + N ++  Y + G   S   ++ +M K+N +S   +I GY   G
Sbjct: 65  QLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAG 124

Query: 189 FCKEAVSVFQEMEKTKEA------------------------------EPNEATLVNVLS 218
               A  VF EM   K                                 P+E TL +V S
Sbjct: 125 DLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFS 184

Query: 219 ACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI 278
             + + ++S G+ +H Y + +Y L +  +V +++ +MY++ G +     V   +  ++ +
Sbjct: 185 GSAGLRSVSIGQQIHGY-TIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLV 243

Query: 279 SWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM 338
           +W+T+I G A NGC    L L+ +M I+   P+ +TF+ ++S+CS   +  QG  +  A 
Sbjct: 244 AWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQI-HAE 302

Query: 339 STVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDE 397
           +        +   + ++ MY + G L +A     E   E E  +W ++++A   H + DE
Sbjct: 303 AIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDE-VMWSSMISAYGFHGQGDE 361

Query: 398 MFD 400
             +
Sbjct: 362 AIE 364



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 89/209 (42%), Gaps = 9/209 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  TF   L +CS      +  +IHA  I+ G    + + +SL+  Y     +  A + F
Sbjct: 276 NKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAF 335

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSH 124
           +     D V W+++IS     G   EAI++F  +    +++ N    +++L ACS     
Sbjct: 336 SEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLK 395

Query: 125 KLGKAIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIG 182
             G  +    +     +  +     ++D   R G L     +   MP K ++V W T++ 
Sbjct: 396 DKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLS 455

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEA 211
                   + A  VF+E+    + +PN++
Sbjct: 456 ACNIHKNAEMAQRVFKEI---LQIDPNDS 481


>gi|449450898|ref|XP_004143199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Cucumis sativus]
          Length = 603

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 148/439 (33%), Positives = 245/439 (55%), Gaps = 8/439 (1%)

Query: 29  ALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           ++  H+  ++ G L++    N L++ YV  + I +AHQ+F+ +  P+VVSWT++++G   
Sbjct: 43  SISTHSIALKLGFLNNTVNVNHLINCYVRFRSIATAHQLFDEMPNPNVVSWTSLMAGYVD 102

Query: 89  CGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
            G    A+ +F  +    V PN  T  + + ACS L + + G+  HAH        NI++
Sbjct: 103 NGQPSTALFLFGEMLRSPVVPNDFTFATAIKACSILSNLRHGEMFHAHVEIFGYGGNIVV 162

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            ++++D Y +C  +     +F  M  +N+VSWT+MI  YA+     EA+ VF+E      
Sbjct: 163 CSSLIDMYGKCNDVVKARGVFNSMSCKNIVSWTSMIAAYAQNAHGDEALKVFREFTSLSS 222

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVH-SYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264
             PN   L +V+SAC+S+  L  GK +H + IS   D   S +V + +++MY KCG +  
Sbjct: 223 EHPNPYMLASVISACASLGRLVSGKVMHGAAISLGCD--SSEVVASVLVDMYAKCGSLDY 280

Query: 265 AIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324
           + +VFN ++    I ++++I   A  G GR++LQLF  M+   + P+ +T + ++ ACSH
Sbjct: 281 SDKVFNRISNPSVIPYTSMIVSTAKYGFGRKSLQLFEEMVRKGLKPNHITLVGVLHACSH 340

Query: 325 GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS--V 382
            GL ++GL    +M   Y I+P+ +HY CVVDM  R G L++A    + M +  +    +
Sbjct: 341 SGLPNEGLYYLTSMYEKYGIMPETKHYTCVVDMLARVGELDKAFDLAKSMDVAPDDKALL 400

Query: 383 WGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442
           WGALL+A R H   ++     Q LVN      G +  +SN +A A   E  +K+R E++R
Sbjct: 401 WGALLSASRCHGRVDIAAEACQQLVNSNRQVAGAYVTLSNVYASAGDMEKAHKLRVEMKR 460

Query: 443 MGLKKKTGCSWIEVNPSIF 461
            G+ K+ GCSWIE+  S +
Sbjct: 461 TGVHKEPGCSWIEIKDSSY 479



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 155/298 (52%), Gaps = 8/298 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           ML  P   N +TF  A+KACS+    +     HAHV  +G+  +I + +SL+  Y    D
Sbjct: 116 MLRSPVVPNDFTFATAIKACSILSNLRHGEMFHAHVEIFGYGGNIVVCSSLIDMYGKCND 175

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLS 116
           +  A  +FNS+   ++VSWT++I+  ++     EA+ +F          PN   L SV+S
Sbjct: 176 VVKARGVFNSMSCKNIVSWTSMIAAYAQNAHGDEALKVFREFTSLSSEHPNPYMLASVIS 235

Query: 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS 176
           AC+SL     GK +H  ++    +++ ++ + ++D Y +CGSL     +F ++   +V+ 
Sbjct: 236 ACASLGRLVSGKVMHGAAISLGCDSSEVVASVLVDMYAKCGSLDYSDKVFNRISNPSVIP 295

Query: 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236
           +T+MI   A+ GF ++++ +F+EM + K  +PN  TLV VL ACS     + G Y  + +
Sbjct: 296 YTSMIVSTAKYGFGRKSLQLFEEMVR-KGLKPNHITLVGVLHACSHSGLPNEGLYYLTSM 354

Query: 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML--AYKDK-ISWSTVISGLAMNG 291
             +Y +         V++M  + G++  A  +   +  A  DK + W  ++S    +G
Sbjct: 355 YEKYGIMPETKHYTCVVDMLARVGELDKAFDLAKSMDVAPDDKALLWGALLSASRCHG 412


>gi|30688521|ref|NP_850342.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|18491267|gb|AAL69458.1| At2g41080/T3K9.15 [Arabidopsis thaliana]
 gi|330254831|gb|AEC09925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 565

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 142/411 (34%), Positives = 238/411 (57%), Gaps = 6/411 (1%)

Query: 49  NSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVK 105
           N L++ YV   D+ +A ++F+ +    + +W  +I+GL +  F++E + +F    G+   
Sbjct: 29  NILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFS 88

Query: 106 PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYL 165
           P+  TL SV S  + L S  +G+ IH ++++   E ++++++++   Y+R G L     +
Sbjct: 89  PDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIV 148

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
              MP RN+V+W T+I G A+ G C E V    +M K     PN+ T V VLS+CS ++ 
Sbjct: 149 IRSMPVRNLVAWNTLIMGNAQNG-CPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAI 207

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285
              G+ +H+  + +   S    V +++I+MY KCG +G A + F+    +D++ WS++IS
Sbjct: 208 RGQGQQIHAE-AIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMIS 266

Query: 286 GLAMNGCGRQALQLFSLMIINAVFP-DDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 344
               +G G +A++LF+ M        ++V F+ L+ ACSH GL D+GL LF  M   Y  
Sbjct: 267 AYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGF 326

Query: 345 VPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQ 404
            P ++HY CVVD+ GRAG L++AEA IR MPI+ +  +W  LL+AC IH+N EM  R+ +
Sbjct: 327 KPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFK 386

Query: 405 DLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
           +++         + L++N  A A RW D +++R  +R   +KK+ G SW E
Sbjct: 387 EILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFE 437



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 89/210 (42%), Gaps = 9/210 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  TF   L +CS      +  +IHA  I+ G    + + +SL+  Y     +  A + F
Sbjct: 191 NKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAF 250

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSH 124
           +     D V W+++IS     G   EAI++F  +    +++ N    +++L ACS     
Sbjct: 251 SEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLK 310

Query: 125 KLGKAIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIG 182
             G  +    +     +  +     ++D   R G L     +   MP K ++V W T++ 
Sbjct: 311 DKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLS 370

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEAT 212
                   + A  VF+E+    + +PN++ 
Sbjct: 371 ACNIHKNAEMAQRVFKEI---LQIDPNDSA 397


>gi|297805312|ref|XP_002870540.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316376|gb|EFH46799.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 547

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 150/449 (33%), Positives = 242/449 (53%), Gaps = 12/449 (2%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YTF   +K CS     +    +H  V+  G   D+ +  S + FY   KD+ SA ++F
Sbjct: 106 DEYTFPLVMKVCSNNAEFRVGSTVHGLVLRIGFDKDVVLGTSFVDFYGKCKDLCSARKVF 165

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSH--KL 126
             +   +VVSWT +I    K G  +EA  MF   D+ P  N     L   ++LV    K 
Sbjct: 166 GEMPERNVVSWTALIVAYVKSGELEEAKRMF---DLMPERN-----LGTWNALVDGLVKS 217

Query: 127 GKAIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           G  ++A  L + + + +II   +++D Y + G + S   LF      +V +W+ +I GYA
Sbjct: 218 GDLVNARKLFDEMPKRDIISYTSMIDGYAKGGDMVSARDLFENARGVDVRAWSALILGYA 277

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G   EA  VF EM   K  +P+E  +V ++SACS +      + V SY+    +   S
Sbjct: 278 QNGQPNEAFKVFSEM-CAKNVKPDEFIMVGLMSACSQMGCFELCEKVDSYLHQSMNKFSS 336

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
           + V  A+I+M  KCG +  A ++F  +  +D +S+ +++ G+A++GCG +A++LF  M+ 
Sbjct: 337 HYVIPALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGCGSEAVRLFEKMVD 396

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             + PD+V F  ++  CS   LV++GL  F+ M   Y I+    HY+C+V++  R G L+
Sbjct: 397 EGIVPDEVAFTVILKVCSQSRLVEEGLRYFELMRKEYSILASPDHYSCIVNLLSRTGKLK 456

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EA   I+ MP EA  S WG+LL  C +H N E+ + + + L   +  S G++ L+SN +A
Sbjct: 457 EAYELIKSMPFEAHASAWGSLLGGCSLHGNTEIAEVVARQLFELEPQSAGSYVLLSNIYA 516

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWI 454
             DRW D   +RD++   G+KK  G SWI
Sbjct: 517 ALDRWADLAHLRDKMNENGIKKICGRSWI 545



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 159/353 (45%), Gaps = 24/353 (6%)

Query: 31  EIHAHVIEYGHLHDIFIQN-SLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89
           +IHA +I  G   D   QN   +    +   +  +  +F  V +P    W  +I G S  
Sbjct: 28  QIHARIIRKGLEQD---QNLISIFISSSSSSLSYSSSVFERVPYPGTYLWNHLIKGYSNK 84

Query: 90  GFHKEAIDMFCGID----VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
               E + +   +      +P+  T   V+  CS+    ++G  +H   LR   + +++L
Sbjct: 85  FLFFETVSLLMRMMRTGFARPDEYTFPLVMKVCSNNAEFRVGSTVHGLVLRIGFDKDVVL 144

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
             + +DFY +C  L S   +F +MP+RNVVSWT +I  Y + G  +EA  +F  M     
Sbjct: 145 GTSFVDFYGKCKDLCSARKVFGEMPERNVVSWTALIVAYVKSGELEEAKRMFDLM----- 199

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
            E N  T   ++        L   + +   +  R  +S +++     I+ Y K GD+  A
Sbjct: 200 PERNLGTWNALVDGLVKSGDLVNARKLFDEMPKRDIISYTSM-----IDGYAKGGDMVSA 254

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
             +F      D  +WS +I G A NG   +A ++FS M    V PD+   + L+SACS  
Sbjct: 255 RDLFENARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQM 314

Query: 326 GLVDQGLILFKAMSTVYEIVPQM-QHY--ACVVDMYGRAGLLEEAEAFIREMP 375
           G  +   +  K  S +++ + +   HY    ++DM  + G ++ A     EMP
Sbjct: 315 GCFE---LCEKVDSYLHQSMNKFSSHYVIPALIDMNAKCGHMDRAAKLFEEMP 364


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 145/455 (31%), Positives = 254/455 (55%), Gaps = 35/455 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N++T+   LK C+          +H  V+  G   D+F++ +L+  Y    +I  AH++F
Sbjct: 131 NNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVF 190

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGK 128
           + ++  DVV WT +I+   +     +A+ +F  +  +      ++ +S  S++       
Sbjct: 191 DRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAV------- 243

Query: 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188
                    L +  + +  A L              +F +M +RN +SW +M+ GY + G
Sbjct: 244 -------GQLGDGRMAISRARL--------------VFDRMEERNGISWNSMLSGYTQNG 282

Query: 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDLSVSNL 247
              +A+S+F +M+ + E +PN  T + ++SACS + +   G+ +H++ IS++ D+  +  
Sbjct: 283 RPTDALSLFNQMQAS-ECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTT-- 339

Query: 248 VGNAVINMYVKCGDVGIAIQVFN--MLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
           + NA+++MY+KCGD+  A+++FN   L  +D  SW+ +ISG  ++G G++AL+LFS M +
Sbjct: 340 LRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQV 399

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365
             V P+D+TF +++SACSH GL+D+G   F  M+ +  + P+M+HYAC+VDM GRAG L 
Sbjct: 400 EGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKL-SVRPEMKHYACMVDMLGRAGFLN 458

Query: 366 EAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425
           EA   I+++P      VWGALL ACRIH N E+ +    +L   +    G + LMSN +A
Sbjct: 459 EAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYA 518

Query: 426 GADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            +++W++   +R  ++  GLKK    S IE    +
Sbjct: 519 ASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEV 553



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 98/224 (43%), Gaps = 18/224 (8%)

Query: 114 VLSACSSLVSHKLGKAIHAH-SLRNLNENNIILDNAILDFYIRCGSLASCGYLF------ 166
           +L  C+SL + KL   IH+  S R    +       ++  Y + G L S   LF      
Sbjct: 31  LLQCCTSLTTLKL---IHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLFDHRHHH 87

Query: 167 ----VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS 222
                + P  N     TM+  YA  G   EA+ ++  M++      N  T   VL  C+S
Sbjct: 88  HHGHTQAP--NSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVG-VNNFTYPFVLKVCAS 144

Query: 223 ISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWST 282
                FG+ VH  +  R        V  A+++MY KCG++G A +VF+ +  +D + W+ 
Sbjct: 145 ELGAVFGEVVHGQV-VRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTA 203

Query: 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
           +I+         +AL LF  M       D++T I++ SA    G
Sbjct: 204 MITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLG 247


>gi|413923618|gb|AFW63550.1| hypothetical protein ZEAMMB73_399779 [Zea mays]
          Length = 1118

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 143/434 (32%), Positives = 248/434 (57%), Gaps = 5/434 (1%)

Query: 27   QKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGL 86
            +K    HA+V+     +D+ + N++L FYV + D+ ++ ++F  +   DV++W+ +I G 
Sbjct: 686  RKGQACHAYVVRNSLSYDLALVNAVLGFYVKIGDLQASMRLFEGMTDRDVITWSCMIKGY 745

Query: 87   SKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNI 143
             + G       M+       V+PN+ TLVSVL AC+ +V  + GK +H  ++    E  +
Sbjct: 746  VQHGDAHTGFRMYREMVKARVQPNSVTLVSVLQACALVVDAEEGKRLHRVAVSIGCELEL 805

Query: 144  ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT 203
             +  A++D Y++C        LF +MPK++VV+W  +IGG  +     E++  F+ M   
Sbjct: 806  GVATALVDMYMKCSCHEEAMRLFHRMPKKDVVAWAAVIGGLTQNELPGESLHSFKCMLLN 865

Query: 204  KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263
                P+  T+V VL+ACS          +H Y+  R   + +  V  A++++Y KCGD+ 
Sbjct: 866  DHV-PDAVTMVKVLAACSEFGGNRLAICLHGYL-VRNGFNNNAFVAAALLDLYSKCGDLD 923

Query: 264  IAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323
             A++VF     KD + W ++I+G   +G G++A+ L+  MI +++ P++VTF++++SACS
Sbjct: 924  SAVRVFEGTTEKDIVVWGSMIAGYGAHGLGQEAVALYQRMIASSIQPNNVTFLSVLSACS 983

Query: 324  HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 383
            H GLV +G+ +F +M+ V+ +VP  +H + +VD+ GRAG L+EA   IR+M   A    W
Sbjct: 984  HSGLVQEGIQIFDSMTQVFGVVPNAEHQSAMVDLLGRAGELQEAIRVIRDMDGRAVAHTW 1043

Query: 384  GALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443
             ALL ACR H N +M +   ++L+      VG + L++N +A  ++WE+    RD ++  
Sbjct: 1044 CALLAACRKHNNTKMSEVAAKNLLKLDPDHVGYYNLLTNLYAFDEKWENVKDTRDMVKGR 1103

Query: 444  GLKKKTGCSWIEVN 457
             L+K  G S +EV 
Sbjct: 1104 DLRKVAGYSSVEVT 1117



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/396 (29%), Positives = 201/396 (50%), Gaps = 37/396 (9%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEY-GHLHDIFIQNSLLHFYVTVKDIFSAHQIFN 69
           +T +  L+AC+          +HA  +       D F+  +++  Y    D+  A   + 
Sbjct: 567 FTLSLLLRACTALPSLTHGRAVHAAAVRSCTASEDAFVATAIVQMYSRCGDMAGAINAYG 626

Query: 70  SVVFPDVVSWTTIISGLSKCGFHKEAIDMFC------GIDVKPNANTLVSVLSACSSLVS 123
            +  PD+V  T++++G  + G  +EA++ F       G+ V P   TLVSV+SA + L  
Sbjct: 627 MLEKPDIVLRTSVVTGYEQNGMAEEALEFFARNVVGQGVLVTPV--TLVSVMSAAAQLGH 684

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            + G+A HA+ +RN    ++ L NA+L FY++ G L +   LF  M  R+V++W+ MI G
Sbjct: 685 VRKGQACHAYVVRNSLSYDLALVNAVLGFYVKIGDLQASMRLFEGMTDRDVITWSCMIKG 744

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY-ISTRYDL 242
           Y + G       +++EM K +  +PN  TLV+VL AC+ +     GK +H   +S   +L
Sbjct: 745 YVQHGDAHTGFRMYREMVKAR-VQPNSVTLVSVLQACALVVDAEEGKRLHRVAVSIGCEL 803

Query: 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302
            +   V  A+++MY+KC     A+++F+ +  KD ++W+ VI GL  N    ++L  F  
Sbjct: 804 ELG--VATALVDMYMKCSCHEEAMRLFHRMPKKDVVAWAAVIGGLTQNELPGESLHSFKC 861

Query: 303 MIINAVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYEIVPQMQHY 351
           M++N   PD VT + +++ACS           HG LV  G   F   + V          
Sbjct: 862 MLLNDHVPDAVTMVKVLAACSEFGGNRLAICLHGYLVRNG---FNNNAFV---------A 909

Query: 352 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           A ++D+Y + G L+ A   + E   E +  VWG+++
Sbjct: 910 AALLDLYSKCGDLDSA-VRVFEGTTEKDIVVWGSMI 944



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 185/380 (48%), Gaps = 22/380 (5%)

Query: 24  HPHQKALEIHAHV---IEYGHLHDIFIQNSLLH--FYVTVKDIFS-----AHQIFNSVVF 73
            P QK LE  A     +   HLH   +++ LLH   ++T   +       A  +F+ +  
Sbjct: 472 QPLQKLLEAAAATSTPLAAAHLHANILRSGLLHSSHHLTAHVLACYPPGLARDLFDEIRS 531

Query: 74  PDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAH 133
           P       ++    +    + AI +   + V+ +  TL  +L AC++L S   G+A+HA 
Sbjct: 532 PTPRLANALLRAHIRARQWRAAILLGQRLRVRRDGFTLSLLLRACTALPSLTHGRAVHAA 591

Query: 134 SLRNLNEN-NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKE 192
           ++R+   + +  +  AI+  Y RCG +A     +  + K ++V  T+++ GY + G  +E
Sbjct: 592 AVRSCTASEDAFVATAIVQMYSRCGDMAGAINAYGMLEKPDIVLRTSVVTGYEQNGMAEE 651

Query: 193 AVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI---STRYDLSVSNLVG 249
           A+  F      +       TLV+V+SA + +  +  G+  H+Y+   S  YDL++     
Sbjct: 652 ALEFFARNVVGQGVLVTPVTLVSVMSAAAQLGHVRKGQACHAYVVRNSLSYDLALV---- 707

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
           NAV+  YVK GD+  ++++F  +  +D I+WS +I G   +G      +++  M+   V 
Sbjct: 708 NAVLGFYVKIGDLQASMRLFEGMTDRDVITWSCMIKGYVQHGDAHTGFRMYREMVKARVQ 767

Query: 310 PDDVTFIALISACSHGGLVDQGLILFK-AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368
           P+ VT ++++ AC+     ++G  L + A+S   E+  ++     +VDMY +    EEA 
Sbjct: 768 PNSVTLVSVLQACALVVDAEEGKRLHRVAVSIGCEL--ELGVATALVDMYMKCSCHEEAM 825

Query: 369 AFIREMPIEAEWSVWGALLN 388
                MP + +   W A++ 
Sbjct: 826 RLFHRMP-KKDVVAWAAVIG 844



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 138/265 (52%), Gaps = 4/265 (1%)

Query: 9    NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
            N  T    L+AC+L    ++   +H   +  G   ++ +  +L+  Y+       A ++F
Sbjct: 769  NSVTLVSVLQACALVVDAEEGKRLHRVAVSIGCELELGVATALVDMYMKCSCHEEAMRLF 828

Query: 69   NSVVFPDVVSWTTIISGLSKCGFHKEAIDMF-CGI--DVKPNANTLVSVLSACSSLVSHK 125
            + +   DVV+W  +I GL++     E++  F C +  D  P+A T+V VL+ACS    ++
Sbjct: 829  HRMPKKDVVAWAAVIGGLTQNELPGESLHSFKCMLLNDHVPDAVTMVKVLAACSEFGGNR 888

Query: 126  LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            L   +H + +RN   NN  +  A+LD Y +CG L S   +F    ++++V W +MI GY 
Sbjct: 889  LAICLHGYLVRNGFNNNAFVAAALLDLYSKCGDLDSAVRVFEGTTEKDIVVWGSMIAGYG 948

Query: 186  ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
              G  +EAV+++Q M  +   +PN  T ++VLSACS    +  G  +   ++  + +  +
Sbjct: 949  AHGLGQEAVALYQRMIAS-SIQPNNVTFLSVLSACSHSGLVQEGIQIFDSMTQVFGVVPN 1007

Query: 246  NLVGNAVINMYVKCGDVGIAIQVFN 270
                +A++++  + G++  AI+V  
Sbjct: 1008 AEHQSAMVDLLGRAGELQEAIRVIR 1032


>gi|3402709|gb|AAD12003.1| hypothetical protein [Arabidopsis thaliana]
          Length = 563

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 142/411 (34%), Positives = 238/411 (57%), Gaps = 6/411 (1%)

Query: 49  NSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFC---GIDVK 105
           N L++ YV   D+ +A ++F+ +    + +W  +I+GL +  F++E + +F    G+   
Sbjct: 27  NILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFS 86

Query: 106 PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYL 165
           P+  TL SV S  + L S  +G+ IH ++++   E ++++++++   Y+R G L     +
Sbjct: 87  PDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIV 146

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
              MP RN+V+W T+I G A+ G C E V    +M K     PN+ T V VLS+CS ++ 
Sbjct: 147 IRSMPVRNLVAWNTLIMGNAQNG-CPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAI 205

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285
              G+ +H+  + +   S    V +++I+MY KCG +G A + F+    +D++ WS++IS
Sbjct: 206 RGQGQQIHAE-AIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMIS 264

Query: 286 GLAMNGCGRQALQLFSLMIINAVFP-DDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 344
               +G G +A++LF+ M        ++V F+ L+ ACSH GL D+GL LF  M   Y  
Sbjct: 265 AYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGF 324

Query: 345 VPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQ 404
            P ++HY CVVD+ GRAG L++AEA IR MPI+ +  +W  LL+AC IH+N EM  R+ +
Sbjct: 325 KPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFK 384

Query: 405 DLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455
           +++         + L++N  A A RW D +++R  +R   +KK+ G SW E
Sbjct: 385 EILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFE 435



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 89/210 (42%), Gaps = 9/210 (4%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N  TF   L +CS      +  +IHA  I+ G    + + +SL+  Y     +  A + F
Sbjct: 189 NKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAF 248

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSH 124
           +     D V W+++IS     G   EAI++F  +    +++ N    +++L ACS     
Sbjct: 249 SEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLK 308

Query: 125 KLGKAIHAHSLRNLN-ENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTTMIG 182
             G  +    +     +  +     ++D   R G L     +   MP K ++V W T++ 
Sbjct: 309 DKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLS 368

Query: 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEAT 212
                   + A  VF+E+    + +PN++ 
Sbjct: 369 ACNIHKNAEMAQRVFKEI---LQIDPNDSA 395


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 152/419 (36%), Positives = 230/419 (54%), Gaps = 36/419 (8%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 120
           A  IF  +   +V  W T +   ++     +AI +F  +   D+ P+  T   VL ACS 
Sbjct: 66  AKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSR 125

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSL--------------------- 159
           L+  + GK +H +  +   ++N+ L N I+  Y  CG +                     
Sbjct: 126 LLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIM 185

Query: 160 ---------ASCGY-LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN 209
                    A   Y LF +MP+RNV SWT+MIGGYA+ G  KEA+ +F EME      PN
Sbjct: 186 IARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLL-PN 244

Query: 210 EATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF 269
           E T+V VL AC+ +  L  G+ +H + S R     +  V N +I+MYVKCG +  A ++F
Sbjct: 245 EVTVVAVLVACADMGNLVLGRRIHDF-SNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIF 303

Query: 270 NMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVD 329
           + +  +  +SWS +I+GLA +G    AL LF+ MI   V P+ VTFI ++ ACSH G+V+
Sbjct: 304 DNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVE 363

Query: 330 QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           +G   F +M+  Y IVP+++HY C+VD++ RAGLL+EA  FI  MPI     VWGALL  
Sbjct: 364 KGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGG 423

Query: 390 CRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448
           C++H+N ++ +   + L     ++ G + ++SN +A A RWED  ++R  +R  G  +K
Sbjct: 424 CKVHKNVKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGTWEK 482



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 158/315 (50%), Gaps = 36/315 (11%)

Query: 7   SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           S +HYT +  LKACS     +    +H +V + G   ++F+QN ++H Y    +I  A +
Sbjct: 110 SPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARK 169

Query: 67  IFNSVVFPDVV-------------------------------SWTTIISGLSKCGFHKEA 95
           +F+ +   DV+                               SWT++I G ++CG  KEA
Sbjct: 170 VFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEA 229

Query: 96  IDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDF 152
           ID+F  ++   + PN  T+V+VL AC+ + +  LG+ IH  S R+  E NI + N ++D 
Sbjct: 230 IDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDM 289

Query: 153 YIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEAT 212
           Y++CG L     +F  M +R VVSW+ MI G A  G  ++A+++F +M  T   +PN  T
Sbjct: 290 YVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTG-VKPNAVT 348

Query: 213 LVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNM 271
            + +L ACS +  +  G+   + ++  Y +         +++++ + G +  A + + NM
Sbjct: 349 FIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNM 408

Query: 272 LAYKDKISWSTVISG 286
               + + W  ++ G
Sbjct: 409 PIAPNGVVWGALLGG 423


>gi|357129835|ref|XP_003566566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Brachypodium distachyon]
          Length = 614

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 146/460 (31%), Positives = 253/460 (55%), Gaps = 16/460 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +H TFT  L AC+          +H  V+  G   ++ + N+L+  Y   +   SA + F
Sbjct: 122 DHATFTTVLSACAREASLPTCAMVHGLVVSRGFEAEVSVGNALVTAYFECESPGSAERAF 181

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSVLSACSSLVSHKL 126
           + +   +V++WT +ISG+++   +K++I +F  +   V  N+ T  S L AC+  ++ K 
Sbjct: 182 HGMAERNVITWTAMISGMAREELYKDSIVLFQQMRRTVDANSATYSSSLLACAGSLALKE 241

Query: 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAE 186
           G+ IH   ++   E ++ +++ ++D Y +CG +     +F    + + +S T ++ G+A+
Sbjct: 242 GQQIHGLVVKAGLETDLHVESGLMDLYSKCGLMEDTLSVFRLCRQPDEISLTVILVGFAQ 301

Query: 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVN------VLSACSSISALSFGKYVHSYISTRY 240
            G  ++A  +F EM         E  L++      VL A  + +  + GK +H+ +  + 
Sbjct: 302 NGLEEKAFELFAEM-------AGEGILIDTNMVSAVLGAFGASAPFALGKQIHALVIKKC 354

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
               +  V N +INMY KCG++  +IQVFN    K+ ISW+++I+  A +G G +  +LF
Sbjct: 355 -FGRNIYVCNGLINMYSKCGELEESIQVFNETPSKNSISWNSIIAAFARHGQGSEVFKLF 413

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
             M  +   P DVTF++L+  CSH G   +GL +  +MS+ Y I+P+++HYACVVDM GR
Sbjct: 414 ESMKADGANPTDVTFLSLLHGCSHVGSAKKGLEILNSMSSEYGILPRVEHYACVVDMLGR 473

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           AGLLE+A +FI + P +    +W AL+ AC    N E+     + L++    S   + L+
Sbjct: 474 AGLLEDARSFIEDGPFKDSALLWQALMGACSFRGNSEIGKYAAEKLLHLDPDSPAAYVLL 533

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           SN ++   RW+D  ++   +R MGL+K TG SWIE+   +
Sbjct: 534 SNIYSSEGRWDDRARVMKSMREMGLRKDTGKSWIELEKEV 573



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 105/438 (23%), Positives = 190/438 (43%), Gaps = 37/438 (8%)

Query: 2   LSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEY-GHL----------HDIFIQNS 50
           ++ P+  ++   +  L  C  A  H+    +H  +++   H           H +   N+
Sbjct: 1   MAVPALLDYAYLSGLLSRCGRAADHRLGAALHVTIVKNPSHFLLCPLRPSLRHVLVAWNA 60

Query: 51  LLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI-------- 102
           L+  Y        A ++F+ +   D VSW ++I         ++A+  F  +        
Sbjct: 61  LVSMYARCGRHAEAARVFDEMRIRDSVSWNSLIGSSGA----EDALSQFRRMLRSSSSPG 116

Query: 103 -DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLAS 161
             V  +  T  +VLSAC+   S      +H   +    E  + + NA++  Y  C S  S
Sbjct: 117 GGVSCDHATFTTVLSACAREASLPTCAMVHGLVVSRGFEAEVSVGNALVTAYFECESPGS 176

Query: 162 CGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221
               F  M +RNV++WT MI G A     K+++ +FQ+M +T +A  N AT  + L AC+
Sbjct: 177 AERAFHGMAERNVITWTAMISGMAREELYKDSIVLFQQMRRTVDA--NSATYSSSLLACA 234

Query: 222 SISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWS 281
              AL  G+ +H  +  +  L     V + ++++Y KCG +   + VF +    D+IS +
Sbjct: 235 GSLALKEGQQIHGLV-VKAGLETDLHVESGLMDLYSKCGLMEDTLSVFRLCRQPDEISLT 293

Query: 282 TVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 341
            ++ G A NG   +A +LF+ M    +  D     A++ A         G  +    + V
Sbjct: 294 VILVGFAQNGLEEKAFELFAEMAGEGILIDTNMVSAVLGAFGASAPFALGKQIH---ALV 350

Query: 342 YEIVPQMQHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND--- 396
            +       Y C  +++MY + G LEE+     E P +   S W +++ A   H      
Sbjct: 351 IKKCFGRNIYVCNGLINMYSKCGELEESIQVFNETPSKNSIS-WNSIIAAFARHGQGSEV 409

Query: 397 -EMFDRIRQDLVNKKGVS 413
            ++F+ ++ D  N   V+
Sbjct: 410 FKLFESMKADGANPTDVT 427


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 143/418 (34%), Positives = 228/418 (54%), Gaps = 38/418 (9%)

Query: 43  HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI 102
            ++  Q +++  YV  K +  A QIFN +   DVV W T+I+G S+CG   EA+ +F   
Sbjct: 324 RNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLF--- 380

Query: 103 DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASC 162
                                            + + + +I+  N ++  Y + G + + 
Sbjct: 381 ---------------------------------KQMVKKDIVSWNTMVASYAQVGQMDAA 407

Query: 163 GYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS 222
             +F +M ++N+VSW ++I G  + G   +A+  F  M    + +P+++T    LS+C+ 
Sbjct: 408 IKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQ-KPDQSTFACGLSSCAH 466

Query: 223 ISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWST 282
           ++AL  GK +H  +  +   +    V NA+I MY KCG +  A  +F  + + D +SW++
Sbjct: 467 LAALQVGKQLHQLV-MKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNS 525

Query: 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 342
           +I+  A+NG GR+AL+LF  M +  V PD+VTF+ ++SACSH GL+DQGL LFK M   Y
Sbjct: 526 LIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAY 585

Query: 343 EIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRI 402
            I P  +HYAC+VD+ GRAG LEEA   +R M I A   +WGALL ACRIH N E+    
Sbjct: 586 NIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFA 645

Query: 403 RQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            + L+  +      + L+SN  A A RW++  ++R  ++  G +K+ G SWIE+   +
Sbjct: 646 AEKLLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQNRV 703



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 170/393 (43%), Gaps = 83/393 (21%)

Query: 42  LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTT-------------------- 81
           + D+   N+++  Y     +  A  +F  +V  D+VSW T                    
Sbjct: 354 IRDVVCWNTMIAGYSQCGRMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEE 413

Query: 82  -----------IISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLG 127
                      +ISGL++ G + +A+  F  +     KP+ +T    LS+C+ L + ++G
Sbjct: 414 MKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVG 473

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           K +H   +++    ++ + NA++  Y +CGS++S   LF  +   +VVSW ++I  YA  
Sbjct: 474 KQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALN 533

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           G  +EA+ +F +ME  +   P+E T V +LSACS +  +  G  +               
Sbjct: 534 GNGREALKLFHKME-VEGVAPDEVTFVGILSACSHVGLIDQGLKL--------------- 577

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
                     KC      +Q +N+    +   ++ ++  L   G   +A QL   M INA
Sbjct: 578 ---------FKC-----MVQAYNIEPLAEH--YACMVDLLGRAGRLEEAFQLVRGMKINA 621

Query: 308 VFPDDVTFIALISACS-HGGLVDQGLILFKAMSTVYEIVP-QMQHYACVVDMYGRAGLLE 365
              +   + AL+ AC  HG L    L  F A   + E  P +  +Y  + +M   AG  +
Sbjct: 622 ---NAGIWGALLGACRIHGNL---ELAKFAA-EKLLEFEPHKTSNYVLLSNMQAEAGRWD 674

Query: 366 E---AEAFIREMPIEAE--WSVWGALLNACRIH 393
           E       ++E   E +  WS W  L N  R+H
Sbjct: 675 EVARVRRLMKEKGAEKQPGWS-WIELQN--RVH 704



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 170/389 (43%), Gaps = 51/389 (13%)

Query: 43  HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI 102
            +I   NS++  Y+    +  A Q+F+ +   D+ SWT +I+  ++ G   +A ++F  +
Sbjct: 75  RNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRDLYSWTLMITCYTRNGELAKARNLFNLL 134

Query: 103 DVKPNA---NTLVSVLSACSSL-VSHKLGKAIHAHSLRNLN------------------- 139
             K N    N +V+  +       + +L  A+ A  L + N                   
Sbjct: 135 PYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFF 194

Query: 140 ----ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVS 195
               E +++  N ++D ++  G L S    F K+P  N VSW TM+ G+A  G   EA  
Sbjct: 195 EEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARR 254

Query: 196 VFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG-NAVIN 254
           +F +M            + NV++  + I+A     +V   IS   ++   N +    VIN
Sbjct: 255 LFDQM-----------PIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVIN 303

Query: 255 MYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVT 314
            YV+ G +  A Q+ N + Y++  + + +ISG   N     A Q+F+ + I     D V 
Sbjct: 304 GYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQISIR----DVVC 359

Query: 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
           +  +I+  S  G +D+ L LFK M     +   +  +  +V  Y + G ++ A     EM
Sbjct: 360 WNTMIAGYSQCGRMDEALHLFKQM-----VKKDIVSWNTMVASYAQVGQMDAAIKIFEEM 414

Query: 375 PIEAEWSVWGALLNACRIHRNDEMFDRIR 403
             E     W +L++   + +N    D ++
Sbjct: 415 K-EKNIVSWNSLISG--LTQNGSYLDALK 440



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 136/324 (41%), Gaps = 65/324 (20%)

Query: 135 LRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAV 194
            +++   N +  N+++  + + G ++    LF  MP+RN+VSW +MI  Y      +EA 
Sbjct: 38  FQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEAR 97

Query: 195 SVFQEMEK-------------TKEAEPNEA-TLVNVL-----SACSSISALSFGKYVHSY 235
            +F +M               T+  E  +A  L N+L       C +     + K     
Sbjct: 98  QLFDKMPTRDLYSWTLMITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFD 157

Query: 236 ISTR-YD-LSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNG- 291
            + R +D +   +LV  N+++  Y + G++ + +Q F  +A +D +SW+ ++ G    G 
Sbjct: 158 EARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGD 217

Query: 292 -----------------------CG-------RQALQLFSLMIINAVFPDDVTFIALISA 321
                                  CG        +A +LF  M I  V    V + A+I+A
Sbjct: 218 LNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNV----VAWNAMIAA 273

Query: 322 CSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP---IEA 378
                 VD+ + LF  M     I      +  V++ Y R G L+EA   + +MP   + A
Sbjct: 274 YVQNCHVDEAISLFMEMPEKNSI-----SWTTVINGYVRMGKLDEARQLLNQMPYRNVAA 328

Query: 379 EWSVWGALLNACRIHRNDEMFDRI 402
           + ++    +   R+    ++F++I
Sbjct: 329 QTAMISGYVQNKRMDDARQIFNQI 352



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 102/219 (46%), Gaps = 16/219 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +  TF   L +C+     Q   ++H  V++ G+  D+F+ N+L+  Y     I SA  +F
Sbjct: 453 DQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLF 512

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACS--SLVS 123
             +   DVVSW ++I+  +  G  +EA+ +F  ++V+   P+  T V +LSACS   L+ 
Sbjct: 513 KDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLID 572

Query: 124 H--KLGK-AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP-KRNVVSWTT 179
              KL K  + A+++  L E+   +    +D   R G L     L   M    N   W  
Sbjct: 573 QGLKLFKCMVQAYNIEPLAEHYACM----VDLLGRAGRLEEAFQLVRGMKINANAGIWGA 628

Query: 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLS 218
           ++G     G  + A       EK  E EP++ +   +LS
Sbjct: 629 LLGACRIHGNLELAKFA---AEKLLEFEPHKTSNYVLLS 664



 Score = 45.4 bits (106), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 9/126 (7%)

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
           N  I    K G +  AI+VF  + +K+ ++ +++IS  A NG    A QLF  M    + 
Sbjct: 19  NLKITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNI- 77

Query: 310 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEA 369
              V++ ++I+A  H   V++   LF  M T       +  +  ++  Y R G L +A  
Sbjct: 78  ---VSWNSMIAAYLHNDRVEEARQLFDKMPT-----RDLYSWTLMITCYTRNGELAKARN 129

Query: 370 FIREMP 375
               +P
Sbjct: 130 LFNLLP 135


>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
          Length = 549

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 163/462 (35%), Positives = 253/462 (54%), Gaps = 37/462 (8%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+    S N +T    LKAC     + +A+ +H   I+ G    +F+QN+L+  YV    
Sbjct: 79  MICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGL 138

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSS 120
           I  A ++F+ +                     K  ID+          N LV + + C +
Sbjct: 139 IHCARKLFDDIT-------------------DKTLIDIIV-------RNALVDMYAKCGN 172

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           L S    +AI   +     E N++   +++  Y + GS+     +F +MP +NVVSW +M
Sbjct: 173 LHS---AQAIFDRT----QEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSM 225

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI-STR 239
           I  Y   G  +EA+ +F +M  ++   P+EATLV++L+ACS +  L  GK +H+YI S +
Sbjct: 226 ISCYLREGQYREALDLFNKMRNSRVV-PDEATLVSILAACSQLGDLVMGKKIHNYILSNK 284

Query: 240 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299
               V+  + N++I+MY KCG V  A+ +F  +  K+ +SW+ +I  LA++GCG +A++L
Sbjct: 285 GAYGVT--LYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKL 342

Query: 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359
           F  M  +   PD++T   L+SACSH GLVD GL  F  M  +Y +  +++HYAC+VD+ G
Sbjct: 343 FEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLG 402

Query: 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFAL 419
           R GLL EA   I  MP++ +  VWGALL ACRIH N E+  +I + L+  +  S G + L
Sbjct: 403 RGGLLGEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVL 462

Query: 420 MSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461
           +SN +  A RWED  KIR  +   G+KK    S IE++  I+
Sbjct: 463 ISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISSIEIDGCIY 504


>gi|414887787|tpg|DAA63801.1| TPA: hypothetical protein ZEAMMB73_367984 [Zea mays]
          Length = 711

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 152/445 (34%), Positives = 245/445 (55%), Gaps = 5/445 (1%)

Query: 13  FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV 72
           F   + AC      +  + +H + ++ G   DI + N+L+  Y     +  A  +F S+ 
Sbjct: 269 FATVIPACGKVKELRTGMALHGYAVKCGVGDDICVPNALVDMYCKCARLDMAASLFWSID 328

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKA 129
             DV SW+TII+G S+   +  ++ +F  +    +KPN+ T+ S+L + S L   + GK 
Sbjct: 329 HKDVFSWSTIIAGHSQNRIYNVSVSLFTEMVASGIKPNSTTIASILPSISELRLLRYGKE 388

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           IH  SLRN  E++  L +A++DFY R G +     +F   PK ++V   +MI GY     
Sbjct: 389 IHCFSLRNRLEHSEFLASALIDFYCRQGYIRDAQIVFEFKPKNDLVVLNSMIRGYVVNKD 448

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
             E+          +   P+  T+V+VL  C+  S L  GK +H+Y + R+++S    V 
Sbjct: 449 -SESALRLLRALLKEGLRPDHVTVVSVLPLCNQPSRLLQGKELHAY-AIRHNISSCFSVT 506

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
           NA+ +MY KCG + IA ++F ++  ++ ++++T+IS L  +G   QA  LF LM  + V 
Sbjct: 507 NALTDMYCKCGCLEIANKIFLLMTERNTVTYNTLISSLGKHGHADQAFILFDLMKRDGVS 566

Query: 310 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEA 369
           PD VTF+AL+S CSHGGL+D+GL  + +M   Y I P  +HY+C+VD+Y R+G L++A +
Sbjct: 567 PDKVTFVALLSCCSHGGLIDKGLCFYDSMLRDYNIPPDKEHYSCIVDLYSRSGKLDDAWS 626

Query: 370 FIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADR 429
           FI  +    E  V G LL+ACR H   ++ + + + +  +     G   L+SN +A A  
Sbjct: 627 FIANLQEVPEIDVLGCLLSACRDHHRMDIAELVAERIFEQNPNDPGYHILLSNVYASAGM 686

Query: 430 WEDTNKIRDEIRRMGLKKKTGCSWI 454
           W +  +IR  I    LKK+TG S I
Sbjct: 687 WSEVTRIRTMIEERSLKKRTGNSLI 711



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 200/413 (48%), Gaps = 14/413 (3%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHV---IEYGHLH-DIFIQNSLLHFYVTVKDIFSA 64
           + +T+   LKAC+     ++  ++  +V   I  G    ++F+Q +L+  +     +  A
Sbjct: 160 DRFTYPPVLKACAALGEVEQGRKVQENVETDIARGIAKGNVFVQCALVDMFAKCGCLGEA 219

Query: 65  HQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSACSSL 121
             +F S+   D+ SWT +I G  + G   E + +   +     +P++    +V+ AC  +
Sbjct: 220 RNMFESMGVRDLASWTAMIGGAVRGGDWLEVMTLLKRMKSEGFRPDSMIFATVIPACGKV 279

Query: 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181
              + G A+H ++++    ++I + NA++D Y +C  L     LF  +  ++V SW+T+I
Sbjct: 280 KELRTGMALHGYAVKCGVGDDICVPNALVDMYCKCARLDMAASLFWSIDHKDVFSWSTII 339

Query: 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241
            G+++      +VS+F EM  +   +PN  T+ ++L + S +  L +GK +H + S R  
Sbjct: 340 AGHSQNRIYNVSVSLFTEMVASG-IKPNSTTIASILPSISELRLLRYGKEIHCF-SLRNR 397

Query: 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301
           L  S  + +A+I+ Y + G +  A  VF      D +  +++I G  +N     AL+L  
Sbjct: 398 LEHSEFLASALIDFYCRQGYIRDAQIVFEFKPKNDLVVLNSMIRGYVVNKDSESALRLLR 457

Query: 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361
            ++   + PD VT ++++  C+    + QG  L  A +  + I         + DMY + 
Sbjct: 458 ALLKEGLRPDHVTVVSVLPLCNQPSRLLQGKEL-HAYAIRHNISSCFSVTNALTDMYCKC 516

Query: 362 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN-DEMFDRIRQDLVNKKGVS 413
           G LE A      M  E     +  L+++   H + D+ F  I  DL+ + GVS
Sbjct: 517 GCLEIANKIFLLM-TERNTVTYNTLISSLGKHGHADQAF--ILFDLMKRDGVS 566



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 169/359 (47%), Gaps = 21/359 (5%)

Query: 31  EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAH--QIFNSVVFPDVVSWTTIISGLSK 88
            +HA ++  G+     +   L+  Y  ++D    H  ++F+ +   +  +W  +I GL  
Sbjct: 78  RLHAALLVRGYHRSTVLAAQLVRAYARMRDGGLGHAVRVFDGMPTRNSFAWNAVIKGLVD 137

Query: 89  CGFHKEAI----DMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHS----LRNLNE 140
            G   EA+    DM     V  +  T   VL AC++L   + G+ +  +      R + +
Sbjct: 138 AGRFSEALRWYWDMVRDGSVVADRFTYPPVLKACAALGEVEQGRKVQENVETDIARGIAK 197

Query: 141 NNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEM 200
            N+ +  A++D + +CG L     +F  M  R++ SWT MIGG    G   E +++ + M
Sbjct: 198 GNVFVQCALVDMFAKCGCLGEARNMFESMGVRDLASWTAMIGGAVRGGDWLEVMTLLKRM 257

Query: 201 EKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCG 260
            K++   P+      V+ AC  +  L  G  +H Y + +  +     V NA+++MY KC 
Sbjct: 258 -KSEGFRPDSMIFATVIPACGKVKELRTGMALHGY-AVKCGVGDDICVPNALVDMYCKCA 315

Query: 261 DVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALIS 320
            + +A  +F  + +KD  SWST+I+G + N     ++ LF+ M+ + + P+  T  +++ 
Sbjct: 316 RLDMAASLFWSIDHKDVFSWSTIIAGHSQNRIYNVSVSLFTEMVASGIKPNSTTIASILP 375

Query: 321 ACSHGGLVDQGLILFKAMSTVYEIVPQMQH----YACVVDMYGRAGLLEEAEAFIREMP 375
           + S   L+  G  +       + +  +++H     + ++D Y R G + +A+      P
Sbjct: 376 SISELRLLRYGKEIH-----CFSLRNRLEHSEFLASALIDFYCRQGYIRDAQIVFEFKP 429



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 109/254 (42%), Gaps = 18/254 (7%)

Query: 128 KAIHAHSLRNLNENNIILDNAILDFY--IRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           + +HA  L      + +L   ++  Y  +R G L     +F  MP RN  +W  +I G  
Sbjct: 77  RRLHAALLVRGYHRSTVLAAQLVRAYARMRDGGLGHAVRVFDGMPTRNSFAWNAVIKGLV 136

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G   EA+  + +M +      +  T   VL AC+++  +  G+ V   + T  D++  
Sbjct: 137 DAGRFSEALRWYWDMVRDGSVVADRFTYPPVLKACAALGEVEQGRKVQENVET--DIARG 194

Query: 246 NLVGN-----AVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
              GN     A+++M+ KCG +G A  +F  +  +D  SW+ +I G    G   + + L 
Sbjct: 195 IAKGNVFVQCALVDMFAKCGCLGEARNMFESMGVRDLASWTAMIGGAVRGGDWLEVMTLL 254

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV----VD 356
             M      PD + F  +I AC     +  G+ L       Y +   +    CV    VD
Sbjct: 255 KRMKSEGFRPDSMIFATVIPACGKVKELRTGMALHG-----YAVKCGVGDDICVPNALVD 309

Query: 357 MYGRAGLLEEAEAF 370
           MY +   L+ A + 
Sbjct: 310 MYCKCARLDMAASL 323


>gi|125550837|gb|EAY96546.1| hypothetical protein OsI_18451 [Oryza sativa Indica Group]
          Length = 591

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 142/456 (31%), Positives = 250/456 (54%), Gaps = 6/456 (1%)

Query: 9   NHYTFTQALKACSLAHPHQ--KALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQ 66
           +  TFT  L  C+ A          +H  V+  G   ++ + N+L+  Y       SA +
Sbjct: 120 DRATFTTVLSECARAGAASLPACAMVHGLVVSCGFEAEVPVGNALVTAYFECGSPASAER 179

Query: 67  IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSVLSACSSLVSH 124
           +F+ +   +V++WT +ISG+++   +KE+  +F  +   V  N  T    L AC+  ++ 
Sbjct: 180 VFHGMAEKNVITWTAMISGMARAELYKESFSLFGQMIRTVDANNATYSCTLLACARSLAA 239

Query: 125 KLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGY 184
           + G+ +H   ++   E ++ +++ ++D Y +CG +     +F    + + V  T ++ G+
Sbjct: 240 REGQQVHGLVVKAGFEADLHVESGLMDVYSKCGLMEDALTVFRSCREPDEVFLTVILVGF 299

Query: 185 AERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244
           A+ G  ++A  +F EM      E +E T+  VL A  + +  + GK +H+ +  R    V
Sbjct: 300 AQNGLEEKAFELFAEMVGAGN-EIDENTVSTVLGAFGASAPFALGKQIHALVIKRC-FGV 357

Query: 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI 304
           +  V N ++NMY KCG++  ++QVF+ +  K+ +SW+++I+  A +G G +  QLF  M 
Sbjct: 358 NTYVCNGLVNMYSKCGELRESVQVFDEMPSKNSVSWNSIIAAFARHGHGSEVYQLFESMK 417

Query: 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364
            +   P DVTF++L+ ACSH G   +GL +  +MS+ Y ++P+M+HYACVVDM GRAGLL
Sbjct: 418 ADGAKPTDVTFLSLLHACSHVGSAKKGLEILNSMSSQYGVLPRMEHYACVVDMLGRAGLL 477

Query: 365 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424
           ++A++FI + P      +W AL+ AC  H N E+     + L+         + L+SN +
Sbjct: 478 DDAKSFIEDGPFTDSALLWQALMGACSFHGNSEVGKHAAEKLLLLDPSCTAAYVLLSNIY 537

Query: 425 AGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           +   RW+D  K+   +  MGL+K TG SWIE+   +
Sbjct: 538 SSEGRWDDRAKVMKRMSEMGLRKDTGKSWIELEKEV 573



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 106/420 (25%), Positives = 187/420 (44%), Gaps = 33/420 (7%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEY-GHL----------HDIFIQNSLLHFYVT 57
           N+  F+  L +C      +    +HA V++   H           H +   N+L+  Y  
Sbjct: 10  NYARFSGLLASCGREGDLRLGAALHAAVVKNPAHFRLCASRPWLRHVLVAWNALVSMYAR 69

Query: 58  VKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKP-NANTLVS 113
                 A ++F+ +   D VSW ++I+     G   +A+ +F  +   D +  +  T  +
Sbjct: 70  CGRREDAARVFDEMRVRDAVSWNSLIAASRGAG---DALALFRRMLRSDARACDRATFTT 126

Query: 114 VLSACSSLVSHKLGKAIHAHSL--RNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK 171
           VLS C+   +  L      H L      E  + + NA++  Y  CGS AS   +F  M +
Sbjct: 127 VLSECARAGAASLPACAMVHGLVVSCGFEAEVPVGNALVTAYFECGSPASAERVFHGMAE 186

Query: 172 RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKY 231
           +NV++WT MI G A     KE+ S+F +M +T +A  N AT    L AC+   A   G+ 
Sbjct: 187 KNVITWTAMISGMARAELYKESFSLFGQMIRTVDA--NNATYSCTLLACARSLAAREGQQ 244

Query: 232 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNG 291
           VH  +  +        V + ++++Y KCG +  A+ VF      D++  + ++ G A NG
Sbjct: 245 VHGLV-VKAGFEADLHVESGLMDVYSKCGLMEDALTVFRSCREPDEVFLTVILVGFAQNG 303

Query: 292 CGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY 351
              +A +LF+ M+      D+ T   ++ A         G  +    + V +    +  Y
Sbjct: 304 LEEKAFELFAEMVGAGNEIDENTVSTVLGAFGASAPFALGKQIH---ALVIKRCFGVNTY 360

Query: 352 AC--VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDRIRQD 405
            C  +V+MY + G L E+     EMP +   S W +++ A   H +     ++F+ ++ D
Sbjct: 361 VCNGLVNMYSKCGELRESVQVFDEMPSKNSVS-WNSIIAAFARHGHGSEVYQLFESMKAD 419



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 3/133 (2%)

Query: 1   MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60
           M+   +  +  T +  L A   + P     +IHA VI+     + ++ N L++ Y    +
Sbjct: 315 MVGAGNEIDENTVSTVLGAFGASAPFALGKQIHALVIKRCFGVNTYVCNGLVNMYSKCGE 374

Query: 61  IFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGID---VKPNANTLVSVLSA 117
           +  + Q+F+ +   + VSW +II+  ++ G   E   +F  +     KP   T +S+L A
Sbjct: 375 LRESVQVFDEMPSKNSVSWNSIIAAFARHGHGSEVYQLFESMKADGAKPTDVTFLSLLHA 434

Query: 118 CSSLVSHKLGKAI 130
           CS + S K G  I
Sbjct: 435 CSHVGSAKKGLEI 447


>gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group]
 gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group]
          Length = 857

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 149/432 (34%), Positives = 244/432 (56%), Gaps = 6/432 (1%)

Query: 29  ALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSK 88
           A E+H   ++ G   D+   NSL+  Y ++  +  A +IF+ +   D +SWT +ISG  K
Sbjct: 317 AKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEK 376

Query: 89  CGFHKEAIDMFCGID---VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL 145
            GF  +A++++  ++   V P+  T+ S L+AC+ L    +G  +H  +        +++
Sbjct: 377 NGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVV 436

Query: 146 DNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
            NA+L+ Y +   +     +F  M +++VVSW++MI G+       EA+  F+ M     
Sbjct: 437 ANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYM--LGH 494

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
            +PN  T +  LSAC++  AL  GK +H+Y+  R  +     V NA++++YVKCG    A
Sbjct: 495 VKPNSVTFIAALSACAATGALRSGKEIHAYV-LRCGIGSEGYVPNALLDLYVKCGQTSYA 553

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325
              F++ + KD +SW+ ++SG   +G G  AL LF+ M+     PD+VTF+AL+ ACS  
Sbjct: 554 WAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRA 613

Query: 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 385
           G+V QG  LF  M+  + IVP ++HYAC+VD+  R G L EA   I  MPI+ + +VWGA
Sbjct: 614 GMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGA 673

Query: 386 LLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445
           LLN CRIHR+ E+ +   + ++  +   V    L+ + +  A +W    ++R  +R  GL
Sbjct: 674 LLNGCRIHRHVELGELAAKVILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGL 733

Query: 446 KKKTGCSWIEVN 457
           ++  GCSW+EV 
Sbjct: 734 EQDNGCSWVEVK 745



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 107/383 (27%), Positives = 196/383 (51%), Gaps = 16/383 (4%)

Query: 47  IQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---D 103
           + N++L   V   +I+ A ++F  +   DV SW  ++ G  K GF +EA+D++  +    
Sbjct: 133 LGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAG 192

Query: 104 VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCG 163
           ++P+  T   VL  C  +   ++G+ +HAH LR    + + + NA++  Y +CG + +  
Sbjct: 193 MRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAAR 252

Query: 164 YLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI 223
            +F  M   + +SW  MI G+ E   C+  + +F  M +  E +PN  T+ +V  A   +
Sbjct: 253 KVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLEN-EVQPNLMTITSVTVASGML 311

Query: 224 SALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTV 283
           S + F K +H +   R   ++     N++I MY   G +G A ++F+ +  KD +SW+ +
Sbjct: 312 SEVGFAKEMHGFAVKR-GFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAM 370

Query: 284 ISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV-- 341
           ISG   NG   +AL++++LM ++ V PDDVT  + ++AC+  G +D G+ L +       
Sbjct: 371 ISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGF 430

Query: 342 --YEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEM 398
             Y +V        +++MY ++  +++A    + M  E +   W +++   C  HR+ E 
Sbjct: 431 IRYVVVAN-----ALLEMYAKSKHIDKAIEVFKFM-AEKDVVSWSSMIAGFCFNHRSFEA 484

Query: 399 FDRIRQDLVNKKGVSVGTFALMS 421
               R  L + K  SV   A +S
Sbjct: 485 LYYFRYMLGHVKPNSVTFIAALS 507



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 168/324 (51%), Gaps = 6/324 (1%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           YTF   L+ C      +   E+HAHV+ +G   ++ + N+L+  Y    DI +A ++F+ 
Sbjct: 198 YTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDG 257

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLG 127
           +   D +SW  +I+G  +    +  +++F  +   +V+PN  T+ SV  A   L      
Sbjct: 258 MAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFA 317

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
           K +H  +++     ++   N+++  Y   G +   G +F +M  ++ +SWT MI GY + 
Sbjct: 318 KEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKN 377

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
           GF  +A+ V+  ME      P++ T+ + L+AC+ +  L  G  +H     +  +    +
Sbjct: 378 GFPDKALEVYALME-LHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYV-V 435

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           V NA++ MY K   +  AI+VF  +A KD +SWS++I+G   N    +AL  F  M +  
Sbjct: 436 VANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYM-LGH 494

Query: 308 VFPDDVTFIALISACSHGGLVDQG 331
           V P+ VTFIA +SAC+  G +  G
Sbjct: 495 VKPNSVTFIAALSACAATGALRSG 518



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 4/130 (3%)

Query: 200 MEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKC 259
           +E + E  P+E   V +   C    A+  G    +     +  S    +GNA+++M V+ 
Sbjct: 87  LESSPEP-PDEGAYVALFRLCEWRRAVDAGMRACARADAEHP-SFGLRLGNAMLSMLVRF 144

Query: 260 GDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALI 319
           G++  A +VF  +  +D  SW+ ++ G    G   +AL L+  M+   + PD  TF  ++
Sbjct: 145 GEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVL 204

Query: 320 SACSHGGLVD 329
             C  GG+ D
Sbjct: 205 RTC--GGIPD 212


>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 846

 Score =  265 bits (677), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 162/457 (35%), Positives = 263/457 (57%), Gaps = 10/457 (2%)

Query: 5   PSSYNHYTFTQA-LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFS 63
           P S    +F  + L++ SL H      E+H++++ +    D++++++L+  Y    D+  
Sbjct: 345 PDSVTFASFLPSILESGSLRH----CKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEM 400

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSS 120
           A +IF      DV   T +ISG    G + +AI+ F  +    + PN+ T+ SVL AC++
Sbjct: 401 ARKIFQQNTLVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAA 460

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180
           L + KLGK +H   L+   EN + + +AI D Y +CG L      F +M + + + W +M
Sbjct: 461 LAALKLGKELHCDILKKQLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSETDSICWNSM 520

Query: 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240
           I  +++ G  + AV +F++M  +  A+ +  +L + LS+ +++ AL +GK +H Y+  R 
Sbjct: 521 ISSFSQNGKPEMAVDLFRQMGMSG-AKFDSVSLSSALSSAANLPALYYGKEMHGYV-IRN 578

Query: 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300
             S    V +A+I+MY KCG + +A  VFN++A K+++SW+++I+    +GC R+ L LF
Sbjct: 579 AFSSDTFVASALIDMYSKCGKLALARCVFNLMAGKNEVSWNSIIAAYGNHGCARECLDLF 638

Query: 301 SLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360
             M+   V PD VTF+ +ISAC H GLV +G+  F  M+  Y I  +M+HYAC+VD+YGR
Sbjct: 639 HEMLRAGVHPDHVTFLVIISACGHAGLVGEGIHYFHCMTREYGIGARMEHYACMVDLYGR 698

Query: 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420
           AG L EA   I+ MP   +  VWG LL ACR+H N E+     + L+     + G + L+
Sbjct: 699 AGRLHEAFDAIKSMPFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLL 758

Query: 421 SNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVN 457
           SN  A A  W    K+R  ++  G++K  G SWI+VN
Sbjct: 759 SNVHADAGEWGSVLKVRRLMKEKGVQKIPGYSWIDVN 795



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 158/333 (47%), Gaps = 11/333 (3%)

Query: 1   MLSCPSSYNHYT--FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV 58
           ++S P + ++ T       +ACS A   Q+A ++H  +I  G      + + +L  YV  
Sbjct: 33  VMSKPETQDYLTTQLESLFRACSDASVVQQARQVHTQIIVGGMSDVCALSSRVLGLYVLC 92

Query: 59  KDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVL 115
             I     +F  +   + + W  +I GL   G+   A+  +    G +V P+  T   V+
Sbjct: 93  GRISDGGNLFFGLELCNALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVI 152

Query: 116 SACSSLVSHKLGKAIHAHSLRNLNEN-NIILDNAILDFYIRCGSLASCGYLFVKMPKRNV 174
            AC  L +  L   +H ++ R+L  + ++ + +A++  Y   G +     +F ++P+R+ 
Sbjct: 153 KACGGLNNVPLCMVVH-NTARSLGFHVDLFVGSALIKLYADNGYICDARRVFDELPQRDT 211

Query: 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
           + W  M+ GY + G    A+  F  M +T  +  N  T   +LS C++      G  VH 
Sbjct: 212 ILWNVMLHGYVKSGDFNNAMGTFCGM-RTSYSMVNSVTYTCILSICATRGKFCLGTQVHG 270

Query: 235 Y-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG 293
             I + ++      V N ++ MY KCG++  A ++FN +   D ++W+ +I+G   NG  
Sbjct: 271 LVIGSGFEFDPQ--VANTLVAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQNGFT 328

Query: 294 RQALQLFSLMIINAVFPDDVTFIALISACSHGG 326
            +A  LF+ MI   V PD VTF + + +    G
Sbjct: 329 DEAAPLFNAMISAGVKPDSVTFASFLPSILESG 361


>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 697

 Score =  265 bits (677), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 140/451 (31%), Positives = 248/451 (54%), Gaps = 39/451 (8%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           YTF+  +KAC+     +    +H H+ + G    +F+Q +L+ FY  ++ +  A ++F+ 
Sbjct: 236 YTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDE 295

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAI 130
           +   D  +WT ++S L++ G    A  +F                               
Sbjct: 296 MCERDAFAWTAMVSALARVGDMDSARKLF------------------------------- 324

Query: 131 HAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFC 190
                  + E N    N ++D Y R G++ S   LF +MP ++++SWTTMI  Y++    
Sbjct: 325 -----EEMPERNTATWNTMIDGYARLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQY 379

Query: 191 KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGN 250
           ++A++++ EM +     P+E T+  V SAC+ I AL  GK +H Y+ ++  L++   +G+
Sbjct: 380 QDALAIYSEM-RLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQ-GLNLDVYIGS 437

Query: 251 AVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP 310
           A+++MY KCG + +++ +F  L  K+   W+ VI GLA++G   +AL++F++M    + P
Sbjct: 438 ALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMP 497

Query: 311 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAF 370
           + VTFI+++SAC+H GLVD+G   F +M+  Y+I P ++HY C+VDM  ++G L EA   
Sbjct: 498 NGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALEL 557

Query: 371 IREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRW 430
           I+ M  E    +WGALLN C++H N E+ +   + L+  + ++ G + L+ + +A    W
Sbjct: 558 IKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQLMILEPMNSGHYNLLVSMYAEEKDW 617

Query: 431 EDTNKIRDEIRRMGLKKK-TGCSWIEVNPSI 460
            +   IR  ++  G++KK  G SWIE+  +I
Sbjct: 618 MEVAHIRSMMKEKGVEKKYPGSSWIELEGTI 648


>gi|357457659|ref|XP_003599110.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488158|gb|AES69361.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 623

 Score =  265 bits (677), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 144/431 (33%), Positives = 250/431 (58%), Gaps = 9/431 (2%)

Query: 32  IHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGF 91
           IHAHVI+     D FI + L+  Y+ +     A+ +F+ +   D VSW +++SGL+K G 
Sbjct: 67  IHAHVIKSLDYRDGFIGDQLVSCYLKMGPTKDAYLLFDEMPKKDFVSWNSLVSGLAKIGQ 126

Query: 92  HKEAIDMFCGI----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147
             E + +FC +    ++K N  T +SV+SAC S  +   G  +H  +++      + + N
Sbjct: 127 LGECLSVFCKMKSDSELKLNEFTFLSVISACVSEKACDEGYYVHCCAMKLGLVYEVKVVN 186

Query: 148 AILDFYIRCGSLASCGYLFVKMPK--RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205
           A+++ Y + G + S   LF +MP+  +++VSW +++   A+ G   EA + F +M +   
Sbjct: 187 ALVNMYGKFGFVESAFRLFSEMPESEKSIVSWNSIVAVCAQNGMPNEAFNCF-DMMRVNG 245

Query: 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265
             P++AT+V++L AC +       + +H  I T   L  +  +   ++N+Y K G +  +
Sbjct: 246 FFPDDATMVSLLQACENFPLGRMVEVLHGVIFT-CGLDENLTIVTTLLNLYSKLGRLNNS 304

Query: 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN-AVFPDDVTFIALISACSH 324
            +VF  ++  DK++W+ +++G AM+GCG++A++ F  ++    + PD VTF  L+SACSH
Sbjct: 305 RKVFEEISKPDKVAWTAMLAGYAMHGCGKEAIEFFERIVREEGMEPDHVTFTHLLSACSH 364

Query: 325 GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 384
            GLV +G   F+ MS VY++ P++ HY+C+VD+ GR GLL++A   I+ MP E    VWG
Sbjct: 365 SGLVKEGKYFFRVMSDVYKVQPRLDHYSCMVDLLGRCGLLDDAHELIKNMPFEPNSGVWG 424

Query: 385 ALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444
           ALL ACR+HRN ++     ++L+         + ++SN ++ A  W D +K+R  ++   
Sbjct: 425 ALLGACRVHRNIDLGKEAAKNLIALDPSDPRNYIMLSNMYSAAGLWNDASKVRTLMKNKV 484

Query: 445 LKKKTGCSWIE 455
           L +  GCS+IE
Sbjct: 485 LTRNQGCSFIE 495



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 162/311 (52%), Gaps = 22/311 (7%)

Query: 106 PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYL 165
           P  +TL+  L + SS+    + + IHAH +++L+  +  + + ++  Y++ G       L
Sbjct: 46  PFLSTLILHLKSSSSV---SICRIIHAHVIKSLDYRDGFIGDQLVSCYLKMGPTKDAYLL 102

Query: 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225
           F +MPK++ VSW +++ G A+ G   E +SVF +M+   E + NE T ++V+SAC S  A
Sbjct: 103 FDEMPKKDFVSWNSLVSGLAKIGQLGECLSVFCKMKSDSELKLNEFTFLSVISACVSEKA 162

Query: 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK--ISWSTV 283
              G YVH   + +  L     V NA++NMY K G V  A ++F+ +   +K  +SW+++
Sbjct: 163 CDEGYYVHC-CAMKLGLVYEVKVVNALVNMYGKFGFVESAFRLFSEMPESEKSIVSWNSI 221

Query: 284 ISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH---GGLVD--QGLILFKAM 338
           ++  A NG   +A   F +M +N  FPDD T ++L+ AC +   G +V+   G+I    +
Sbjct: 222 VAVCAQNGMPNEAFNCFDMMRVNGFFPDDATMVSLLQACENFPLGRMVEVLHGVIFTCGL 281

Query: 339 STVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH----R 394
                IV  +      +++Y + G L  +     E+  + +   W A+L    +H     
Sbjct: 282 DENLTIVTTL------LNLYSKLGRLNNSRKVFEEIS-KPDKVAWTAMLAGYAMHGCGKE 334

Query: 395 NDEMFDRIRQD 405
             E F+RI ++
Sbjct: 335 AIEFFERIVRE 345



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 137/272 (50%), Gaps = 5/272 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           N +TF   + AC       +   +H   ++ G ++++ + N+L++ Y     + SA ++F
Sbjct: 146 NEFTFLSVISACVSEKACDEGYYVHCCAMKLGLVYEVKVVNALVNMYGKFGFVESAFRLF 205

Query: 69  NSVVFPD--VVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVS 123
           + +   +  +VSW +I++  ++ G   EA + F  + V    P+  T+VS+L AC +   
Sbjct: 206 SEMPESEKSIVSWNSIVAVCAQNGMPNEAFNCFDMMRVNGFFPDDATMVSLLQACENFPL 265

Query: 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGG 183
            ++ + +H        + N+ +   +L+ Y + G L +   +F ++ K + V+WT M+ G
Sbjct: 266 GRMVEVLHGVIFTCGLDENLTIVTTLLNLYSKLGRLNNSRKVFEEISKPDKVAWTAMLAG 325

Query: 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243
           YA  G  KEA+  F+ + + +  EP+  T  ++LSACS    +  GKY    +S  Y + 
Sbjct: 326 YAMHGCGKEAIEFFERIVREEGMEPDHVTFTHLLSACSHSGLVKEGKYFFRVMSDVYKVQ 385

Query: 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 275
                 + ++++  +CG +  A ++   + ++
Sbjct: 386 PRLDHYSCMVDLLGRCGLLDDAHELIKNMPFE 417


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 136/391 (34%), Positives = 232/391 (59%), Gaps = 5/391 (1%)

Query: 73  FPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKA 129
           F D VSW ++I G  + GF ++A+  F  +   D+K +  TL SVL++ +S+   +   +
Sbjct: 3   FDDEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAIS 62

Query: 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189
           +H   ++   E   +++NA++D Y + G L     +F KM  ++VVSWT+++ GY+  G 
Sbjct: 63  VHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGS 122

Query: 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249
            +EA+ +F +M +     P++  + +VLSAC+ ++ + FG+ +H+ +  +  L  S  V 
Sbjct: 123 YEEAIKLFCKM-RISGVYPDQIAVASVLSACAELTVMDFGQQIHATL-VKSGLESSLSVD 180

Query: 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309
           N+++ MY KCG +  A + F+ +  +D ISW+ +I G A NG G+ +LQ +  MI     
Sbjct: 181 NSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTK 240

Query: 310 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEA 369
           PD +TFI L+ ACSH GL+  G   F+AM  VY I P  +HYAC++D+ GR+G L EA+ 
Sbjct: 241 PDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKG 300

Query: 370 FIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADR 429
            + +M +  +  VW ALL ACR+H+  E+ +   ++L   + ++   + ++SN ++ A +
Sbjct: 301 LLNQMVVAPDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGK 360

Query: 430 WEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
           WED  +IR  +R  G+ K+ G SWIE N  +
Sbjct: 361 WEDAARIRRLMRSRGICKEPGYSWIETNSKV 391



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 170/370 (45%), Gaps = 42/370 (11%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           + YT    L + +     Q A+ +H  +I+ G      + N+L+  Y     +  A  +F
Sbjct: 40  DEYTLPSVLNSFASMKVMQNAISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVF 99

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PNANTLVSVLSACSSLVSHK 125
           + +V  DVVSWT++++G S  G ++EAI +FC + +    P+   + SVLSAC+ L    
Sbjct: 100 SKMVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMD 159

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
            G+ IHA  +++  E+++ +DN+++  Y +CGS+      F  MP R+V+SWT +I GYA
Sbjct: 160 FGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYA 219

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
           + G  K ++  + +M  T   +P+  T + +L ACS    L  G+     +   Y +   
Sbjct: 220 QNGRGKHSLQFYDQMIATG-TKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPG 278

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305
                 +I++  + G +  A  + N +                                 
Sbjct: 279 PEHYACMIDLLGRSGKLAEAKGLLNQM--------------------------------- 305

Query: 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP-QMQHYACVVDMYGRAGLL 364
             V PD V + AL++AC     ++ G +   A   ++E+ P     Y  + +MY  AG  
Sbjct: 306 -VVAPDAVVWKALLAACRVHKELELGEM---AAKNLFELEPMNSMPYVMLSNMYSAAGKW 361

Query: 365 EEAEAFIREM 374
           E+A    R M
Sbjct: 362 EDAARIRRLM 371


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 152/453 (33%), Positives = 250/453 (55%), Gaps = 39/453 (8%)

Query: 11  YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS 70
           YT+   LKA S +      L+IH  V++ G   ++++ N L+  Y   K +  A Q+ + 
Sbjct: 121 YTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDE 180

Query: 71  VVFPDVVSWTTIISGLSKCGFHKEAIDM---FCGIDVKPNANTLVSVLSACSSLVSHKLG 127
           +   DVVSW +++S  ++ G   +A+++      +++KPN  T+ S+L A ++  S    
Sbjct: 181 IPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTNTTS---- 236

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187
                             DN +   Y++         +F+K+ K++V+SW  MI  Y   
Sbjct: 237 ------------------DNVL---YVK--------EMFLKLTKKSVISWNVMIAMYVNN 267

Query: 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL 247
              KEAV ++ +ME     EP+  ++V+VL A   +SALS G+ VH + + R  L  + L
Sbjct: 268 SMPKEAVVLYSQME-ANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKF-AERKKLLPNLL 325

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           + NA+I+MY KCG +  A  VFN + ++D +SW+++IS     G GR A+ +F+ M  + 
Sbjct: 326 LENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSG 385

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
           + PD + F+++++ACSH GL+D G   F  M+    I P+++H+ACVVD+ GRAG ++EA
Sbjct: 386 LNPDSIAFVSVLAACSHAGLLDDGRYYFNLMAEC-GITPKLEHFACVVDLLGRAGKIDEA 444

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
             FIR+MP+E +  VWG LL+ACR++ N  +       L+       G + L+SN +A A
Sbjct: 445 YGFIRQMPLEPDERVWGPLLSACRVYSNMNIGILAADKLLMLNPEHSGYYVLLSNIYAKA 504

Query: 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSI 460
            RW D   IR  + R G+KK  G S +E+N  +
Sbjct: 505 GRWADVAAIRSIMERKGIKKLPGISNVELNDGV 537



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 156/342 (45%), Gaps = 40/342 (11%)

Query: 51  LLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVK---PN 107
           L+  Y    +   A  IF+ +   +VV +  +I        +K+A+ ++  +  +   P+
Sbjct: 60  LMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPD 119

Query: 108 ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFV 167
             T   VL A S   S  +G  IH   L+   + N+ + N ++  Y +C SL     +  
Sbjct: 120 MYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLD 179

Query: 168 KMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 227
           ++P R+VVSW +M+  YA+ G   +A+ + +EME     +PN+ T+ ++L A        
Sbjct: 180 EIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALN-LKPNDCTMASLLPA-------- 230

Query: 228 FGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGL 287
                           V+N   + V  +YVK        ++F  L  K  ISW+ +I+  
Sbjct: 231 ----------------VTNTTSDNV--LYVK--------EMFLKLTKKSVISWNVMIAMY 264

Query: 288 AMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 347
             N   ++A+ L+S M  N V PD V+ ++++ A      +  G  + K  +   +++P 
Sbjct: 265 VNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHK-FAERKKLLPN 323

Query: 348 MQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389
           +     ++DMY + G L +A A   +M      S W ++++A
Sbjct: 324 LLLENALIDMYAKCGCLRDARAVFNQMQFRDVVS-WTSIISA 364



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 5/130 (3%)

Query: 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307
           VG  ++ +Y  CG+ G+A  +F+ +  K+ + ++ +I     N   + AL ++  M    
Sbjct: 56  VGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQG 115

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA--CVVDMYGRAGLLE 365
             PD  T+  ++ A S    +  GL +  A   V +I   +  Y    ++ MYG+   L+
Sbjct: 116 FVPDMYTYPCVLKASSRSDSLWVGLQIHGA---VLKIGLDLNLYVGNGLIAMYGKCKSLK 172

Query: 366 EAEAFIREMP 375
           EA+  + E+P
Sbjct: 173 EAQQVLDEIP 182


>gi|147810456|emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]
          Length = 516

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 157/454 (34%), Positives = 258/454 (56%), Gaps = 18/454 (3%)

Query: 17  LKAC-SLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK--DIFSAHQIFNSVVF 73
            K C S+ H  Q    +HAHVI+ G   ++F+   ++ F    +   +  A ++F  +  
Sbjct: 58  FKQCESMKHLEQ----LHAHVIQTGLEQNLFVMGKIIVFCAVSECGSMDYALRVFGKIEN 113

Query: 74  PDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKP---NANTLVSVLSACSSLVSHKLGKAI 130
           PD   W T+I GL +    ++A + +  + VK    +  T   ++  C  L S  LGK I
Sbjct: 114 PDGFLWNTMIRGLGRTRQPEKAFEFYKRMQVKGEVLDNFTYSFLVKVCGQLGSDLLGKQI 173

Query: 131 HAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFC 190
           H + L++  E ++ + N ++  Y     + +  +LF +MPK  +V+W T+I      G  
Sbjct: 174 HCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSYLVAWNTIIDCNVYCGRY 233

Query: 191 KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG- 249
           KEA+ +F  M ++   +P++AT V  LSAC+++  L  G+ VHS I       + N+V  
Sbjct: 234 KEAIELFFRMLQSG-LKPDDATFVVTLSACAALGELDIGRRVHSCID---HTGLGNVVSV 289

Query: 250 -NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308
            N++I+MY KCG V  A ++FN +  ++ +SW+T+I GLAM+G G +AL+LFS M+   +
Sbjct: 290 SNSLIDMYAKCGVVEAAYEIFNKMKGRNIVSWNTMILGLAMHGHGDEALELFSKMLEEKL 349

Query: 309 -FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367
             P++VTF+ ++ ACSHGG+V++G   F  M   Y I P ++HY  +VD+ GRAGL+EEA
Sbjct: 350 ATPNEVTFLGVLCACSHGGMVEEGRRYFDIMRRDYNIQPTIKHYGSMVDILGRAGLVEEA 409

Query: 368 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427
              I+ MPIE+   VW  LL ACR+H N E+ +++RQ L+  +      + L++N +A A
Sbjct: 410 YRLIKSMPIESNSIVWRTLLAACRVHGNLELAEQVRQXLLELEPDHSSDYVLLANMYASA 469

Query: 428 DRWEDTNKIRDEIRRMGLKK-KTGCSWIEVNPSI 460
            +W    ++R  +   G++K K G S+I   PS+
Sbjct: 470 GQWNKVXRVRKSMHIRGVQKPKPGNSYIGFQPSM 503



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 154/287 (53%), Gaps = 4/287 (1%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +++T++  +K C          +IH +V+++G    +F++N+L+H Y   KDI +A  +F
Sbjct: 150 DNFTYSFLVKVCGQLGSDLLGKQIHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLF 209

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHK 125
             +    +V+W TII     CG +KEAI++F  +    +KP+  T V  LSAC++L    
Sbjct: 210 EEMPKSYLVAWNTIIDCNVYCGRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELD 269

Query: 126 LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYA 185
           +G+ +H+        N + + N+++D Y +CG + +   +F KM  RN+VSW TMI G A
Sbjct: 270 IGRRVHSCIDHTGLGNVVSVSNSLIDMYAKCGVVEAAYEIFNKMKGRNIVSWNTMILGLA 329

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
             G   EA+ +F +M + K A PNE T + VL ACS    +  G+     +   Y++  +
Sbjct: 330 MHGHGDEALELFSKMLEEKLATPNEVTFLGVLCACSHGGMVEEGRRYFDIMRRDYNIQPT 389

Query: 246 NLVGNAVINMYVKCGDVGIAIQVF-NMLAYKDKISWSTVISGLAMNG 291
                +++++  + G V  A ++  +M    + I W T+++   ++G
Sbjct: 390 IKHYGSMVDILGRAGLVEEAYRLIKSMPIESNSIVWRTLLAACRVHG 436



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 123/271 (45%), Gaps = 18/271 (6%)

Query: 111 LVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDF--YIRCGSLASCGYLFVK 168
           ++SV   C S+   K  + +HAH ++   E N+ +   I+ F     CGS+     +F K
Sbjct: 54  VMSVFKQCESM---KHLEQLHAHVIQTGLEQNLFVMGKIIVFCAVSECGSMDYALRVFGK 110

Query: 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228
           +   +   W TMI G       ++A   ++ M+   E   N  T   ++  C  + +   
Sbjct: 111 IENPDGFLWNTMIRGLGRTRQPEKAFEFYKRMQVKGEVLDN-FTYSFLVKVCGQLGSDLL 169

Query: 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288
           GK +H  +  ++ L     V N +++MY    D+  A  +F  +     ++W+T+I    
Sbjct: 170 GKQIHCNV-LKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSYLVAWNTIIDCNV 228

Query: 289 MNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQG-----LILFKAMSTVYE 343
             G  ++A++LF  M+ + + PDD TF+  +SAC+  G +D G      I    +  V  
Sbjct: 229 YCGRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELDIGRRVHSCIDHTGLGNVVS 288

Query: 344 IVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
           +   +      +DMY + G++E A     +M
Sbjct: 289 VSNSL------IDMYAKCGVVEAAYEIFNKM 313


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 149/450 (33%), Positives = 248/450 (55%), Gaps = 11/450 (2%)

Query: 17  LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV--VFP 74
           L ACS     Q    IH+ +   G   ++ + N+++  Y     +  A ++F+++     
Sbjct: 167 LSACSSPALVQDGRMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALR 226

Query: 75  DVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHS 134
           DVVSW  ++S        K+AI ++  + ++P+  T VS+LSACSS     LG+ +H   
Sbjct: 227 DVVSWNIMLSTYVHNDRGKDAIQLYQRMQLRPDKVTYVSLLSACSSAEDVGLGRVLHKQI 286

Query: 135 LRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAV 194
           + +  E N+I+ NA++  Y +CGS      +F KM +R+++SWTT+I  Y  R    EA 
Sbjct: 287 VNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEAC 346

Query: 195 SVFQEM---EK---TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248
            +FQ+M   EK   ++  +P+    V +L+AC+ +SAL  GK V S  +    LS    V
Sbjct: 347 HLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMV-SEQAASCGLSSDKAV 405

Query: 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKIS-WSTVISGLAMNGCGRQALQLFSLMIINA 307
           G AV+N+Y KCG++  A ++F+ +  +  +  W+ +I+  A  G   +AL+LF  M +  
Sbjct: 406 GTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEG 465

Query: 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ-MQHYACVVDMYGRAGLLEE 366
           V PD  +F++++ ACSH GL DQG   F +M+T Y  V + +QH+ CV D+ GR G L+E
Sbjct: 466 VRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKE 525

Query: 367 AEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAG 426
           AE F+ ++P++ +   W +LL ACR HR+ +    +   L+  +      +  +SN +A 
Sbjct: 526 AEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAE 585

Query: 427 ADRWEDTNKIRDEIRRMGLKKKTGCSWIEV 456
             +W    K+R  +   G+KK+ G S IE+
Sbjct: 586 LQKWHAVAKVRKFMAEQGVKKERGVSTIEI 615



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 194/389 (49%), Gaps = 19/389 (4%)

Query: 12  TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71
           TF  AL +C      +  + IH  V++     D  + N+LL+ Y     +  A ++F  +
Sbjct: 60  TFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKM 119

Query: 72  VFP-DVVSWTTIISGLSKCGFHKEAIDMF---CGIDVKPNANTLVSVLSACSSLVSHKLG 127
               +V+SW+ +    +  G   EA+  F     + +K   + +V++LSACSS    + G
Sbjct: 120 ERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDG 179

Query: 128 KAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK--RNVVSWTTMIGGYA 185
           + IH+    +  E+ +++ NA++  Y RCG++     +F  M +  R+VVSW  M+  Y 
Sbjct: 180 RMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYV 239

Query: 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245
                K+A+ ++Q M    +  P++ T V++LSACSS   +  G+ +H  I    +L  +
Sbjct: 240 HNDRGKDAIQLYQRM----QLRPDKVTYVSLLSACSSAEDVGLGRVLHKQI-VNDELEKN 294

Query: 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMI- 304
            +VGNA+++MY KCG    A  VF+ +  +  ISW+T+IS         +A  LF  M+ 
Sbjct: 295 VIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLE 354

Query: 305 ------INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMY 358
                    V PD + F+ +++AC+    ++QG ++ +  ++   +         VV++Y
Sbjct: 355 LEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASC-GLSSDKAVGTAVVNLY 413

Query: 359 GRAGLLEEAEAFIREMPIEAEWSVWGALL 387
           G+ G +EEA      +    +  +W A++
Sbjct: 414 GKCGEIEEARRIFDAVCSRPDVQLWNAMI 442



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/322 (32%), Positives = 169/322 (52%), Gaps = 22/322 (6%)

Query: 64  AHQIFNSVVFPDVVSWTTIISGLSKCGFHKE---AIDMFCGIDVKPNANTLVSVLSACSS 120
           A   F+++   ++ SWT +++  +  G  KE   A++      V+P+A T ++ L +C  
Sbjct: 11  AKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGD 70

Query: 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK-RNVVSWTT 179
             S + G  IH   + +  E +  + NA+L+ Y +CGSL+    +F KM + RNV+SW+ 
Sbjct: 71  PESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSI 130

Query: 180 MIGGYAERGFCKEAVSVFQEM-----EKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234
           M G +A  G   EA+  F+ M     + TK A      +V +LSACSS + +  G+ +HS
Sbjct: 131 MAGAHALHGNVWEALRHFRFMLLLGIKATKSA------MVTILSACSSPALVQDGRMIHS 184

Query: 235 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML--AYKDKISWSTVISGLAMNGC 292
            I+         LV NAV+ MY +CG V  A +VF+ +  A +D +SW+ ++S    N  
Sbjct: 185 CIAL-SGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDR 243

Query: 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352
           G+ A+QL+  M +    PD VT+++L+SACS    V  G +L K +    E+   +    
Sbjct: 244 GKDAIQLYQRMQLR---PDKVTYVSLLSACSSAEDVGLGRVLHKQIVN-DELEKNVIVGN 299

Query: 353 CVVDMYGRAGLLEEAEAFIREM 374
            +V MY + G   EA A   +M
Sbjct: 300 ALVSMYAKCGSHTEARAVFDKM 321



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 104/224 (46%), Gaps = 4/224 (1%)

Query: 152 FYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEA 211
            Y  C S       F  + +RN+ SWT ++  +A  G  KE +   + M +     P+  
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERM-RQDGVRPDAV 59

Query: 212 TLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF-N 270
           T +  L +C    +L  G  +H  +     L +   V NA++NMY KCG +  A +VF  
Sbjct: 60  TFITALGSCGDPESLRDGIRIHQMV-VDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAK 118

Query: 271 MLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQ 330
           M   ++ ISWS +    A++G   +AL+ F  M++  +       + ++SACS   LV  
Sbjct: 119 MERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQD 178

Query: 331 GLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374
           G ++   ++ +     ++     V+ MYGR G +EEA      M
Sbjct: 179 GRMIHSCIA-LSGFESELLVANAVMTMYGRCGAVEEARKVFDAM 221



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 134/292 (45%), Gaps = 16/292 (5%)

Query: 9   NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIF 68
           +  T+   L ACS A        +H  ++      ++ + N+L+  Y        A  +F
Sbjct: 259 DKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVF 318

Query: 69  NSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI----------DVKPNANTLVSVLSAC 118
           + +    ++SWTTIIS   +     EA  +F  +           VKP+A   V++L+AC
Sbjct: 319 DKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNAC 378

Query: 119 SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKR-NVVSW 177
           + + + + GK +   +      ++  +  A+++ Y +CG +     +F  +  R +V  W
Sbjct: 379 ADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLW 438

Query: 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237
             MI  YA+ G   EA+ +F  ME  +   P+  + V++L ACS       GK   + ++
Sbjct: 439 NAMIAVYAQFGQSHEALKLFWRME-MEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMT 497

Query: 238 TRYDLSVSNLVGN--AVINMYVKCGDVGIAIQVFNMLAYK-DKISWSTVISG 286
           T Y  +V+  + +   V ++  + G +  A +    L  K D ++W+++++ 
Sbjct: 498 TEYR-NVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAA 548



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 3/142 (2%)

Query: 255 MYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVT 314
           MY  C   G A   F+ L  ++  SW+ +++  A++G  ++ L+    M  + V PD VT
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 315 FIALISACSHGGLVDQGLILFK-AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIRE 373
           FI  + +C     +  G+ + +  + +  EI P++ +   +++MY + G L  A+    +
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSN--ALLNMYKKCGSLSHAKRVFAK 118

Query: 374 MPIEAEWSVWGALLNACRIHRN 395
           M        W  +  A  +H N
Sbjct: 119 MERTRNVISWSIMAGAHALHGN 140


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.324    0.136    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,038,609,593
Number of Sequences: 23463169
Number of extensions: 279707844
Number of successful extensions: 949260
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6842
Number of HSP's successfully gapped in prelim test: 3128
Number of HSP's that attempted gapping in prelim test: 804552
Number of HSP's gapped (non-prelim): 45391
length of query: 461
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 315
effective length of database: 8,933,572,693
effective search space: 2814075398295
effective search space used: 2814075398295
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 79 (35.0 bits)