Query 038303
Match_columns 461
No_of_seqs 589 out of 1681
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 09:37:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038303.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038303hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 3.3E-77 7.1E-82 584.6 50.0 455 5-461 118-575 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 1.5E-75 3.2E-80 586.2 49.3 457 1-461 279-738 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 2.5E-70 5.4E-75 548.6 45.4 450 1-456 178-632 (857)
4 PLN03218 maturation of RBCL 1; 100.0 5.9E-67 1.3E-71 515.0 49.2 438 8-450 435-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 6.8E-67 1.5E-71 514.6 49.2 448 6-456 366-854 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 5.1E-59 1.1E-63 456.4 44.7 427 6-448 83-526 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.3E-29 2.8E-34 260.3 47.9 421 13-444 434-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 7.7E-29 1.7E-33 254.5 48.4 426 10-444 363-800 (899)
9 PRK11447 cellulose synthase su 99.9 1.5E-21 3.3E-26 201.5 47.0 417 17-447 276-745 (1157)
10 PRK11447 cellulose synthase su 99.9 6.9E-21 1.5E-25 196.7 47.4 422 15-443 117-700 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 1.1E-22 2.4E-27 180.1 27.1 417 13-442 51-484 (966)
12 KOG4626 O-linked N-acetylgluco 99.9 1.4E-21 2.9E-26 173.3 29.5 378 44-432 115-508 (966)
13 PRK11788 tetratricopeptide rep 99.9 1.2E-21 2.5E-26 181.0 29.5 292 153-450 45-354 (389)
14 TIGR00990 3a0801s09 mitochondr 99.9 1.2E-19 2.5E-24 176.4 42.9 419 13-444 130-572 (615)
15 PRK11788 tetratricopeptide rep 99.9 2.4E-20 5.3E-25 172.2 31.3 289 84-408 43-346 (389)
16 PRK10049 pgaA outer membrane p 99.9 2E-18 4.3E-23 170.8 44.1 401 9-443 14-456 (765)
17 PRK15174 Vi polysaccharide exp 99.9 5.3E-19 1.1E-23 171.2 37.8 327 79-413 45-385 (656)
18 PRK09782 bacteriophage N4 rece 99.9 2.9E-17 6.2E-22 163.0 46.5 187 253-444 516-707 (987)
19 PRK15174 Vi polysaccharide exp 99.9 1.9E-18 4.1E-23 167.4 37.4 350 87-445 16-383 (656)
20 PRK09782 bacteriophage N4 rece 99.9 7.2E-17 1.6E-21 160.2 45.5 427 7-446 178-743 (987)
21 PRK14574 hmsH outer membrane p 99.9 5.9E-17 1.3E-21 157.5 43.6 425 13-443 38-513 (822)
22 TIGR00990 3a0801s09 mitochondr 99.8 1.6E-16 3.5E-21 154.5 37.9 394 6-412 156-574 (615)
23 PRK14574 hmsH outer membrane p 99.8 2.2E-15 4.8E-20 146.7 43.0 398 15-417 73-521 (822)
24 PRK10049 pgaA outer membrane p 99.8 8.5E-17 1.8E-21 159.3 33.0 364 44-444 14-423 (765)
25 KOG4422 Uncharacterized conser 99.8 6.8E-14 1.5E-18 119.7 38.7 174 12-190 118-328 (625)
26 KOG2003 TPR repeat-containing 99.8 3E-16 6.5E-21 134.9 24.4 413 12-429 203-709 (840)
27 KOG2002 TPR-containing nuclear 99.8 6.9E-15 1.5E-19 137.8 34.1 431 8-444 268-746 (1018)
28 KOG2002 TPR-containing nuclear 99.8 4.5E-14 9.8E-19 132.5 36.9 364 74-445 268-677 (1018)
29 KOG0495 HAT repeat protein [RN 99.7 7E-12 1.5E-16 113.1 39.9 427 16-456 412-891 (913)
30 KOG4422 Uncharacterized conser 99.7 5.2E-13 1.1E-17 114.4 30.5 345 9-374 206-587 (625)
31 KOG0495 HAT repeat protein [RN 99.7 6.4E-12 1.4E-16 113.4 38.5 410 22-444 388-847 (913)
32 KOG0547 Translocase of outer m 99.7 2.7E-12 5.9E-17 111.8 34.0 403 16-442 121-565 (606)
33 KOG2076 RNA polymerase III tra 99.7 2.9E-13 6.3E-18 126.3 29.4 316 120-441 151-510 (895)
34 PRK10747 putative protoheme IX 99.7 2E-13 4.3E-18 125.0 28.5 284 89-408 97-389 (398)
35 KOG2076 RNA polymerase III tra 99.7 6.3E-12 1.4E-16 117.6 37.4 431 10-445 139-657 (895)
36 PF13429 TPR_15: Tetratricopep 99.7 8.4E-16 1.8E-20 134.5 11.4 256 181-442 15-276 (280)
37 PRK10747 putative protoheme IX 99.6 1.3E-12 2.8E-17 119.7 30.6 276 156-443 97-390 (398)
38 KOG2003 TPR repeat-containing 99.6 2E-12 4.3E-17 111.7 28.4 386 50-443 206-689 (840)
39 KOG4318 Bicoid mRNA stability 99.6 1.2E-12 2.6E-17 121.8 27.8 127 317-447 464-598 (1088)
40 KOG1155 Anaphase-promoting com 99.6 2E-11 4.3E-16 105.9 32.5 191 247-440 331-533 (559)
41 KOG1126 DNA-binding cell divis 99.6 2.1E-13 4.7E-18 123.2 21.2 281 158-447 334-624 (638)
42 TIGR00540 hemY_coli hemY prote 99.6 1.9E-12 4.1E-17 119.3 28.2 287 88-408 96-398 (409)
43 PF13429 TPR_15: Tetratricopep 99.6 5E-15 1.1E-19 129.6 10.5 154 250-407 114-275 (280)
44 KOG1155 Anaphase-promoting com 99.6 3.7E-11 7.9E-16 104.3 33.1 318 117-442 173-494 (559)
45 TIGR00540 hemY_coli hemY prote 99.6 9.7E-12 2.1E-16 114.7 31.5 280 155-442 96-398 (409)
46 KOG1173 Anaphase-promoting com 99.6 7.6E-11 1.6E-15 104.9 34.5 422 11-442 17-517 (611)
47 KOG1915 Cell cycle control pro 99.6 3.1E-10 6.7E-15 99.0 36.5 420 16-446 79-539 (677)
48 KOG1126 DNA-binding cell divis 99.6 1.2E-12 2.6E-17 118.5 22.2 281 92-414 335-625 (638)
49 KOG1915 Cell cycle control pro 99.5 4E-10 8.7E-15 98.3 34.7 380 57-446 85-503 (677)
50 COG3071 HemY Uncharacterized e 99.5 1.1E-10 2.3E-15 99.8 29.5 284 89-408 97-389 (400)
51 COG2956 Predicted N-acetylgluc 99.5 1.7E-11 3.7E-16 101.5 23.9 197 251-450 146-354 (389)
52 KOG1156 N-terminal acetyltrans 99.5 6.1E-10 1.3E-14 100.9 33.0 442 6-457 3-487 (700)
53 COG3071 HemY Uncharacterized e 99.5 1.8E-10 3.9E-15 98.5 27.5 274 58-374 97-387 (400)
54 TIGR02521 type_IV_pilW type IV 99.5 4.9E-11 1.1E-15 101.8 23.8 198 245-443 30-232 (234)
55 KOG1840 Kinesin light chain [C 99.4 2.9E-10 6.4E-15 104.0 28.2 241 144-441 200-477 (508)
56 KOG2376 Signal recognition par 99.4 2.1E-08 4.5E-13 90.3 38.7 409 13-437 15-514 (652)
57 COG2956 Predicted N-acetylgluc 99.4 2.1E-10 4.5E-15 95.2 24.2 284 89-408 48-346 (389)
58 KOG2047 mRNA splicing factor [ 99.4 3.2E-08 7E-13 89.9 37.8 422 14-441 106-613 (835)
59 KOG4162 Predicted calmodulin-b 99.4 4.4E-09 9.5E-14 97.4 32.6 399 39-445 317-785 (799)
60 PF13041 PPR_2: PPR repeat fam 99.4 1.4E-12 2.9E-17 80.3 6.4 50 275-324 1-50 (50)
61 KOG0547 Translocase of outer m 99.4 1.8E-09 3.8E-14 94.7 27.1 339 79-443 118-491 (606)
62 PF13041 PPR_2: PPR repeat fam 99.4 1.7E-12 3.7E-17 79.8 6.0 50 8-57 1-50 (50)
63 KOG3785 Uncharacterized conser 99.4 1.9E-08 4E-13 84.9 31.3 179 17-203 29-214 (557)
64 KOG1173 Anaphase-promoting com 99.4 3.5E-09 7.6E-14 94.6 28.2 409 9-425 81-534 (611)
65 PRK12370 invasion protein regu 99.3 5.3E-10 1.1E-14 107.2 24.8 260 173-444 255-536 (553)
66 KOG4318 Bicoid mRNA stability 99.3 4E-10 8.7E-15 105.5 22.1 243 103-363 20-286 (1088)
67 KOG4340 Uncharacterized conser 99.3 7.3E-09 1.6E-13 85.2 26.6 423 1-443 1-443 (459)
68 TIGR02521 type_IV_pilW type IV 99.3 6E-10 1.3E-14 95.1 21.5 124 248-374 101-229 (234)
69 KOG1129 TPR repeat-containing 99.3 2.9E-10 6.3E-15 94.5 17.1 229 178-443 227-458 (478)
70 KOG1174 Anaphase-promoting com 99.3 2E-07 4.4E-12 80.4 33.8 306 106-419 192-510 (564)
71 PF12569 NARP1: NMDA receptor- 99.3 1.6E-07 3.5E-12 87.4 36.1 411 17-439 11-516 (517)
72 PRK12370 invasion protein regu 99.2 2E-09 4.4E-14 103.2 22.4 256 142-409 255-535 (553)
73 KOG2047 mRNA splicing factor [ 99.2 1.2E-06 2.7E-11 80.0 37.1 352 11-374 139-576 (835)
74 PF12569 NARP1: NMDA receptor- 99.2 5.4E-08 1.2E-12 90.5 29.4 125 248-374 196-331 (517)
75 KOG1156 N-terminal acetyltrans 99.2 7.6E-07 1.6E-11 81.4 34.6 412 19-440 50-508 (700)
76 PRK11189 lipoprotein NlpI; Pro 99.2 5.1E-09 1.1E-13 92.0 19.9 221 184-413 36-269 (296)
77 KOG1129 TPR repeat-containing 99.2 1.4E-09 3E-14 90.5 15.1 227 147-380 227-462 (478)
78 PF04733 Coatomer_E: Coatomer 99.2 6.9E-09 1.5E-13 89.8 19.8 226 177-414 38-270 (290)
79 COG3063 PilF Tfp pilus assembl 99.2 3.5E-09 7.6E-14 84.0 16.0 193 248-442 37-235 (250)
80 KOG1174 Anaphase-promoting com 99.1 1.3E-07 2.9E-12 81.5 25.7 296 5-306 189-500 (564)
81 KOG1840 Kinesin light chain [C 99.1 7.8E-09 1.7E-13 94.9 19.7 224 47-270 201-474 (508)
82 KOG4162 Predicted calmodulin-b 99.1 5.7E-07 1.2E-11 83.8 31.2 400 5-414 318-788 (799)
83 PRK11189 lipoprotein NlpI; Pro 99.1 1.4E-07 2.9E-12 83.0 25.7 212 225-445 41-267 (296)
84 COG3063 PilF Tfp pilus assembl 99.1 5.5E-08 1.2E-12 77.4 20.2 160 283-445 41-204 (250)
85 KOG2376 Signal recognition par 99.1 1.7E-06 3.7E-11 78.3 30.4 378 52-444 19-488 (652)
86 cd05804 StaR_like StaR_like; a 99.0 9.2E-07 2E-11 80.7 29.5 258 182-444 51-337 (355)
87 KOG3616 Selective LIM binding 99.0 1.3E-06 2.8E-11 81.2 29.3 220 183-439 741-962 (1636)
88 PF04733 Coatomer_E: Coatomer 99.0 1.5E-08 3.2E-13 87.7 15.8 245 182-443 9-265 (290)
89 cd05804 StaR_like StaR_like; a 98.9 4.5E-06 9.7E-11 76.2 29.5 94 178-273 118-213 (355)
90 KOG3616 Selective LIM binding 98.9 3.6E-06 7.9E-11 78.2 27.9 305 59-405 545-875 (1636)
91 KOG0624 dsRNA-activated protei 98.9 1.8E-06 4E-11 72.9 23.8 55 81-136 43-100 (504)
92 KOG0985 Vesicle coat protein c 98.9 8.1E-06 1.8E-10 78.6 30.7 374 16-437 844-1243(1666)
93 KOG4340 Uncharacterized conser 98.9 6.6E-07 1.4E-11 74.0 20.6 278 150-437 17-333 (459)
94 KOG3785 Uncharacterized conser 98.9 7E-06 1.5E-10 69.8 26.9 124 8-137 89-214 (557)
95 KOG0548 Molecular co-chaperone 98.9 2.5E-06 5.3E-11 76.5 25.5 90 355-444 365-456 (539)
96 KOG0548 Molecular co-chaperone 98.9 8.3E-06 1.8E-10 73.3 28.7 395 18-426 10-472 (539)
97 PRK04841 transcriptional regul 98.9 4.7E-06 1E-10 86.2 31.6 325 119-444 385-761 (903)
98 KOG3617 WD40 and TPR repeat-co 98.9 4E-05 8.6E-10 72.5 33.6 160 22-201 812-994 (1416)
99 KOG1070 rRNA processing protei 98.9 4.2E-07 9.2E-12 89.8 21.0 205 242-450 1454-1670(1710)
100 PF12854 PPR_1: PPR repeat 98.9 2.5E-09 5.4E-14 58.9 3.4 33 4-36 1-33 (34)
101 KOG3617 WD40 and TPR repeat-co 98.8 1.5E-05 3.3E-10 75.2 28.9 367 20-438 738-1169(1416)
102 KOG0624 dsRNA-activated protei 98.8 2.6E-05 5.5E-10 66.2 26.9 283 51-340 44-369 (504)
103 KOG1127 TPR repeat-containing 98.8 9.7E-06 2.1E-10 78.0 27.1 161 276-440 816-993 (1238)
104 TIGR03302 OM_YfiO outer membra 98.8 5.4E-07 1.2E-11 76.9 17.6 183 245-444 32-233 (235)
105 KOG0985 Vesicle coat protein c 98.8 3.9E-05 8.5E-10 74.1 30.9 314 74-426 982-1325(1666)
106 KOG3081 Vesicle coat complex C 98.8 5.8E-06 1.3E-10 67.6 21.9 248 153-413 18-275 (299)
107 KOG1125 TPR repeat-containing 98.8 2.3E-07 5E-12 83.6 15.5 220 220-443 295-527 (579)
108 KOG1125 TPR repeat-containing 98.8 5.3E-07 1.1E-11 81.4 17.5 216 118-339 295-525 (579)
109 PF12854 PPR_1: PPR repeat 98.8 8.5E-09 1.8E-13 56.7 3.9 33 138-170 2-34 (34)
110 PRK04841 transcriptional regul 98.8 4.6E-05 1E-09 78.9 34.0 324 85-410 383-761 (903)
111 KOG1127 TPR repeat-containing 98.7 2.1E-05 4.5E-10 75.9 26.1 395 26-439 474-909 (1238)
112 PRK10370 formate-dependent nit 98.7 1.8E-06 3.9E-11 70.6 16.5 118 325-444 52-174 (198)
113 KOG1070 rRNA processing protei 98.7 6.6E-06 1.4E-10 81.8 22.4 226 107-334 1457-1693(1710)
114 KOG1128 Uncharacterized conser 98.6 1.2E-05 2.6E-10 74.9 20.9 212 143-374 398-613 (777)
115 KOG1128 Uncharacterized conser 98.6 2.6E-06 5.6E-11 79.2 16.5 220 207-445 395-618 (777)
116 COG5010 TadD Flp pilus assembl 98.6 1.2E-05 2.7E-10 65.7 18.1 156 281-439 70-227 (257)
117 PRK15179 Vi polysaccharide bio 98.6 1.8E-05 3.8E-10 77.0 22.3 141 276-420 85-228 (694)
118 PRK15359 type III secretion sy 98.6 1.6E-06 3.5E-11 67.0 12.6 108 315-424 27-136 (144)
119 TIGR03302 OM_YfiO outer membra 98.6 1.1E-05 2.3E-10 68.9 18.9 183 208-411 31-234 (235)
120 PRK15359 type III secretion sy 98.6 2.8E-06 6.2E-11 65.7 13.7 93 351-443 27-121 (144)
121 KOG1914 mRNA cleavage and poly 98.6 0.00046 9.9E-09 62.5 28.6 127 314-442 368-500 (656)
122 PLN02789 farnesyltranstransfer 98.6 7.4E-05 1.6E-09 65.9 23.4 224 176-440 39-299 (320)
123 PRK10370 formate-dependent nit 98.5 1.4E-05 3E-10 65.5 17.6 155 253-418 23-182 (198)
124 PRK15179 Vi polysaccharide bio 98.5 1.7E-05 3.6E-10 77.2 20.8 133 308-443 82-217 (694)
125 PLN02789 farnesyltranstransfer 98.5 0.0003 6.4E-09 62.1 26.0 208 145-391 39-266 (320)
126 KOG3081 Vesicle coat complex C 98.5 0.00011 2.3E-09 60.4 20.2 216 148-374 46-268 (299)
127 COG5010 TadD Flp pilus assembl 98.5 8.8E-06 1.9E-10 66.5 14.1 135 309-445 63-199 (257)
128 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 7.3E-06 1.6E-10 73.6 14.1 121 315-440 172-294 (395)
129 PRK14720 transcript cleavage f 98.4 0.00014 3.1E-09 71.7 23.4 148 248-425 118-268 (906)
130 KOG2053 Mitochondrial inherita 98.4 0.0024 5.2E-08 61.6 35.2 413 21-450 20-509 (932)
131 PRK14720 transcript cleavage f 98.4 9E-05 1.9E-09 73.1 21.4 234 10-288 31-268 (906)
132 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.3E-05 5.1E-10 70.4 15.4 126 248-376 171-296 (395)
133 TIGR02552 LcrH_SycD type III s 98.3 1E-05 2.2E-10 62.3 11.5 93 351-443 20-114 (135)
134 COG4783 Putative Zn-dependent 98.3 9.7E-05 2.1E-09 66.0 18.4 134 288-443 317-454 (484)
135 TIGR00756 PPR pentatricopeptid 98.3 1E-06 2.2E-11 49.4 4.3 33 279-311 2-34 (35)
136 COG4783 Putative Zn-dependent 98.3 0.00017 3.8E-09 64.4 19.8 115 324-440 318-434 (484)
137 KOG3060 Uncharacterized conser 98.3 0.00014 3.1E-09 59.2 16.3 187 258-448 24-225 (289)
138 PF13812 PPR_3: Pentatricopept 98.3 2.2E-06 4.8E-11 47.6 4.5 34 10-43 1-34 (34)
139 PF13812 PPR_3: Pentatricopept 98.3 2E-06 4.4E-11 47.7 4.3 33 278-310 2-34 (34)
140 TIGR00756 PPR pentatricopeptid 98.2 2E-06 4.3E-11 48.1 4.2 35 175-210 1-35 (35)
141 KOG1914 mRNA cleavage and poly 98.2 0.0041 8.9E-08 56.7 35.3 418 7-431 17-527 (656)
142 TIGR02552 LcrH_SycD type III s 98.2 7.1E-05 1.5E-09 57.5 12.9 101 313-415 18-120 (135)
143 PRK15363 pathogenicity island 98.1 3.2E-05 6.9E-10 58.9 9.9 97 348-444 35-133 (157)
144 PF12895 Apc3: Anaphase-promot 98.1 9E-06 2E-10 56.3 6.4 78 361-439 2-83 (84)
145 PF04840 Vps16_C: Vps16, C-ter 98.1 0.0052 1.1E-07 54.2 28.7 110 248-374 179-288 (319)
146 PF09976 TPR_21: Tetratricopep 98.1 0.00013 2.9E-09 56.6 13.4 112 325-439 24-143 (145)
147 KOG3060 Uncharacterized conser 98.1 0.00059 1.3E-08 55.7 16.7 197 222-421 24-232 (289)
148 cd00189 TPR Tetratricopeptide 98.1 5.4E-05 1.2E-09 53.8 9.7 93 351-443 3-97 (100)
149 KOG2280 Vacuolar assembly/sort 98.0 0.012 2.6E-07 55.9 26.3 129 230-374 668-796 (829)
150 PF09976 TPR_21: Tetratricopep 98.0 0.00042 9E-09 53.8 14.8 125 280-406 15-144 (145)
151 TIGR02795 tol_pal_ybgF tol-pal 98.0 9E-05 1.9E-09 55.4 10.7 100 315-414 5-110 (119)
152 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00015 3.2E-09 54.2 11.4 93 351-443 5-105 (119)
153 PF01535 PPR: PPR repeat; Int 98.0 1.2E-05 2.7E-10 43.3 3.6 30 279-308 2-31 (31)
154 PRK10866 outer membrane biogen 97.9 0.004 8.6E-08 52.9 19.9 173 252-441 38-239 (243)
155 KOG2053 Mitochondrial inherita 97.9 0.018 3.9E-07 55.9 25.4 121 56-179 20-150 (932)
156 PF08579 RPM2: Mitochondrial r 97.9 0.00017 3.6E-09 51.0 8.9 80 280-360 28-116 (120)
157 COG4235 Cytochrome c biogenesi 97.9 0.00038 8.2E-09 58.8 12.6 112 344-455 152-268 (287)
158 PF13414 TPR_11: TPR repeat; P 97.9 8.2E-05 1.8E-09 49.3 6.9 64 380-443 3-67 (69)
159 PF13432 TPR_16: Tetratricopep 97.9 8.5E-05 1.8E-09 48.4 6.8 58 387-444 4-61 (65)
160 KOG2041 WD40 repeat protein [G 97.8 0.029 6.2E-07 53.0 28.5 27 43-69 690-716 (1189)
161 PF01535 PPR: PPR repeat; Int 97.8 2.7E-05 5.7E-10 42.0 3.5 31 11-41 1-31 (31)
162 PF05843 Suf: Suppressor of fo 97.8 0.00074 1.6E-08 58.8 14.3 132 279-413 3-140 (280)
163 PLN03088 SGT1, suppressor of 97.8 0.00015 3.2E-09 65.5 10.3 106 319-426 9-116 (356)
164 KOG0553 TPR repeat-containing 97.8 0.00033 7.2E-09 58.8 10.8 100 286-389 90-191 (304)
165 PF04840 Vps16_C: Vps16, C-ter 97.8 0.022 4.7E-07 50.3 23.6 109 313-438 178-286 (319)
166 PRK02603 photosystem I assembl 97.8 0.00038 8.3E-09 55.9 11.0 91 352-442 39-148 (172)
167 PF10037 MRP-S27: Mitochondria 97.7 0.00037 8.1E-09 63.1 11.1 119 206-324 62-185 (429)
168 PF12895 Apc3: Anaphase-promot 97.7 0.00012 2.5E-09 50.7 6.3 81 290-373 2-83 (84)
169 PF14938 SNAP: Soluble NSF att 97.7 0.0038 8.3E-08 54.6 17.2 132 13-168 38-180 (282)
170 PF10037 MRP-S27: Mitochondria 97.7 0.0012 2.7E-08 59.9 14.1 117 40-156 61-186 (429)
171 KOG1538 Uncharacterized conser 97.7 0.012 2.7E-07 54.8 20.3 65 267-340 737-801 (1081)
172 KOG2280 Vacuolar assembly/sort 97.7 0.05 1.1E-06 51.9 25.9 116 307-438 679-794 (829)
173 cd00189 TPR Tetratricopeptide 97.7 0.00048 1E-08 48.7 9.5 92 280-374 3-94 (100)
174 CHL00033 ycf3 photosystem I as 97.7 0.00052 1.1E-08 54.9 10.4 93 348-440 35-139 (168)
175 KOG0553 TPR repeat-containing 97.7 0.00016 3.6E-09 60.6 7.1 124 321-446 90-218 (304)
176 PLN03088 SGT1, suppressor of 97.6 0.0012 2.5E-08 59.8 12.9 104 283-389 8-112 (356)
177 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.043 9.4E-07 49.2 30.1 130 279-411 399-533 (660)
178 PF14938 SNAP: Soluble NSF att 97.6 0.011 2.3E-07 51.8 18.4 90 283-374 120-222 (282)
179 PF07079 DUF1347: Protein of u 97.6 0.047 1E-06 49.1 33.1 409 20-440 16-521 (549)
180 PRK10153 DNA-binding transcrip 97.6 0.0025 5.5E-08 60.3 15.2 63 381-444 421-483 (517)
181 PF14559 TPR_19: Tetratricopep 97.6 0.00012 2.6E-09 48.3 4.6 54 391-444 2-55 (68)
182 PF06239 ECSIT: Evolutionarily 97.6 0.00064 1.4E-08 54.5 9.2 97 266-363 34-153 (228)
183 PRK02603 photosystem I assembl 97.6 0.0026 5.7E-08 51.0 13.1 129 277-428 35-165 (172)
184 KOG0550 Molecular chaperone (D 97.6 0.0042 9.1E-08 54.7 14.6 155 286-446 178-353 (486)
185 PF05843 Suf: Suppressor of fo 97.6 0.0011 2.4E-08 57.7 11.3 130 313-443 2-136 (280)
186 PRK10153 DNA-binding transcrip 97.5 0.0031 6.8E-08 59.7 14.6 139 275-415 335-488 (517)
187 PF08579 RPM2: Mitochondrial r 97.5 0.0021 4.5E-08 45.6 9.5 80 177-258 28-116 (120)
188 PF13371 TPR_9: Tetratricopept 97.5 0.00043 9.2E-09 46.4 6.1 58 388-445 3-60 (73)
189 COG4700 Uncharacterized protei 97.5 0.034 7.4E-07 43.6 16.8 122 208-332 87-213 (251)
190 PRK15363 pathogenicity island 97.4 0.015 3.2E-07 44.7 14.5 93 250-343 39-134 (157)
191 COG4700 Uncharacterized protei 97.4 0.038 8.3E-07 43.3 16.6 129 308-440 85-219 (251)
192 PF14559 TPR_19: Tetratricopep 97.4 0.0006 1.3E-08 44.9 6.0 48 325-374 4-51 (68)
193 PF12688 TPR_5: Tetratrico pep 97.4 0.0074 1.6E-07 44.5 12.2 92 283-374 7-101 (120)
194 PF13432 TPR_16: Tetratricopep 97.4 0.00088 1.9E-08 43.6 6.7 61 354-414 3-65 (65)
195 PRK10866 outer membrane biogen 97.4 0.035 7.5E-07 47.2 18.0 58 317-374 180-238 (243)
196 CHL00033 ycf3 photosystem I as 97.4 0.0033 7.1E-08 50.3 11.2 62 279-340 37-100 (168)
197 PF09205 DUF1955: Domain of un 97.4 0.028 6.2E-07 41.2 14.3 141 287-446 12-152 (161)
198 KOG1130 Predicted G-alpha GTPa 97.4 0.004 8.7E-08 54.7 11.9 130 313-442 196-343 (639)
199 KOG2796 Uncharacterized conser 97.3 0.06 1.3E-06 44.7 16.9 230 174-412 69-318 (366)
200 PRK10803 tol-pal system protei 97.3 0.0035 7.5E-08 53.7 10.4 96 315-413 146-250 (263)
201 PF12688 TPR_5: Tetratrico pep 97.3 0.012 2.5E-07 43.4 11.8 104 180-284 7-113 (120)
202 PF13525 YfiO: Outer membrane 97.3 0.064 1.4E-06 44.3 17.7 165 253-434 12-198 (203)
203 PF13281 DUF4071: Domain of un 97.2 0.1 2.2E-06 46.8 19.4 161 250-413 145-338 (374)
204 PF03704 BTAD: Bacterial trans 97.2 0.0015 3.3E-08 50.8 7.1 71 382-452 64-139 (146)
205 KOG2796 Uncharacterized conser 97.2 0.027 5.9E-07 46.6 14.0 140 173-316 176-323 (366)
206 PRK15331 chaperone protein Sic 97.1 0.0045 9.7E-08 47.7 8.6 83 360-442 49-133 (165)
207 PF12921 ATP13: Mitochondrial 97.1 0.0069 1.5E-07 45.1 9.4 82 278-359 3-99 (126)
208 PF13414 TPR_11: TPR repeat; P 97.1 0.0018 3.9E-08 42.7 5.8 64 348-411 3-69 (69)
209 KOG1130 Predicted G-alpha GTPa 97.0 0.0041 9E-08 54.7 8.7 260 12-272 17-341 (639)
210 KOG1538 Uncharacterized conser 97.0 0.18 3.9E-06 47.5 19.1 56 13-71 601-658 (1081)
211 PRK10803 tol-pal system protei 96.9 0.019 4.1E-07 49.2 11.7 93 280-374 146-243 (263)
212 PF06239 ECSIT: Evolutionarily 96.9 0.013 2.8E-07 47.3 9.8 88 172-261 45-153 (228)
213 KOG2041 WD40 repeat protein [G 96.9 0.32 6.9E-06 46.4 19.9 204 140-375 689-905 (1189)
214 PF13431 TPR_17: Tetratricopep 96.9 0.00087 1.9E-08 36.7 2.2 33 403-435 2-34 (34)
215 PF13424 TPR_12: Tetratricopep 96.8 0.0034 7.3E-08 42.6 5.4 61 382-442 7-74 (78)
216 COG4235 Cytochrome c biogenesi 96.8 0.05 1.1E-06 46.3 13.0 102 311-414 155-261 (287)
217 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.0077 1.7E-07 54.4 8.4 97 347-446 74-177 (453)
218 COG3898 Uncharacterized membra 96.7 0.43 9.3E-06 42.3 25.7 288 78-374 84-389 (531)
219 PF13525 YfiO: Outer membrane 96.6 0.14 2.9E-06 42.4 14.6 85 280-368 113-198 (203)
220 COG5107 RNA14 Pre-mRNA 3'-end 96.6 0.49 1.1E-05 42.8 28.4 128 313-442 398-530 (660)
221 PF13424 TPR_12: Tetratricopep 96.5 0.0077 1.7E-07 40.8 5.5 59 350-408 7-74 (78)
222 COG3898 Uncharacterized membra 96.5 0.54 1.2E-05 41.8 26.8 277 156-447 97-396 (531)
223 KOG0550 Molecular chaperone (D 96.5 0.57 1.2E-05 41.9 21.8 148 220-374 179-347 (486)
224 PF03704 BTAD: Bacterial trans 96.5 0.089 1.9E-06 40.8 12.0 70 280-350 65-138 (146)
225 PF13371 TPR_9: Tetratricopept 96.5 0.019 4.1E-07 38.2 7.0 59 357-415 4-64 (73)
226 PF12921 ATP13: Mitochondrial 96.5 0.041 9E-07 41.0 9.3 80 175-254 3-96 (126)
227 PF13428 TPR_14: Tetratricopep 96.4 0.0092 2E-07 35.0 4.7 41 382-422 3-43 (44)
228 KOG1920 IkappaB kinase complex 96.3 1.7 3.6E-05 44.6 21.5 114 309-439 932-1051(1265)
229 KOG1585 Protein required for f 96.2 0.58 1.3E-05 38.7 16.5 46 390-436 200-249 (308)
230 PF13281 DUF4071: Domain of un 96.2 0.93 2E-05 40.8 18.1 71 148-219 146-226 (374)
231 PF07079 DUF1347: Protein of u 96.1 1 2.2E-05 41.0 29.7 68 20-87 89-178 (549)
232 KOG1258 mRNA processing protei 96.1 1.2 2.7E-05 41.9 22.6 84 88-171 91-179 (577)
233 KOG0543 FKBP-type peptidyl-pro 96.1 0.3 6.5E-06 43.6 14.0 94 350-443 259-355 (397)
234 PRK11619 lytic murein transgly 96.1 1.6 3.5E-05 43.0 30.7 113 291-406 255-372 (644)
235 smart00299 CLH Clathrin heavy 96.1 0.46 1E-05 36.5 16.2 128 279-426 9-137 (140)
236 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.06 1.3E-06 49.0 9.2 61 311-374 74-138 (453)
237 KOG1585 Protein required for f 95.9 0.33 7.2E-06 40.1 12.1 92 280-372 153-251 (308)
238 KOG2114 Vacuolar assembly/sort 95.8 2.2 4.8E-05 42.0 26.1 210 11-236 284-516 (933)
239 PF04053 Coatomer_WDAD: Coatom 95.8 0.5 1.1E-05 44.1 14.8 165 182-379 269-433 (443)
240 KOG3941 Intermediate in Toll s 95.8 0.089 1.9E-06 44.2 8.8 99 265-364 53-174 (406)
241 COG1729 Uncharacterized protei 95.7 0.11 2.4E-06 43.7 9.4 58 386-443 184-244 (262)
242 KOG0543 FKBP-type peptidyl-pro 95.7 0.057 1.2E-06 47.9 8.0 64 381-444 258-321 (397)
243 KOG1941 Acetylcholine receptor 95.6 0.41 8.9E-06 42.0 12.5 162 279-440 85-272 (518)
244 KOG4555 TPR repeat-containing 95.6 0.17 3.7E-06 37.2 8.7 51 322-374 53-103 (175)
245 PF04053 Coatomer_WDAD: Coatom 95.6 0.43 9.4E-06 44.5 13.7 129 111-270 298-426 (443)
246 PF08631 SPO22: Meiosis protei 95.5 1.5 3.3E-05 38.3 23.7 17 390-406 256-272 (278)
247 KOG2610 Uncharacterized conser 95.5 0.79 1.7E-05 39.8 13.7 113 259-374 116-235 (491)
248 PF10300 DUF3808: Protein of u 95.5 1.6 3.5E-05 41.3 17.3 161 279-442 190-375 (468)
249 COG1729 Uncharacterized protei 95.4 0.22 4.8E-06 42.0 9.8 95 279-374 144-241 (262)
250 COG4105 ComL DNA uptake lipopr 95.3 1.5 3.3E-05 36.8 19.2 171 256-441 44-231 (254)
251 COG3118 Thioredoxin domain-con 95.3 1.7 3.7E-05 37.3 16.1 147 285-433 142-291 (304)
252 KOG4555 TPR repeat-containing 95.2 0.017 3.7E-07 42.2 2.5 91 355-445 50-146 (175)
253 PRK15331 chaperone protein Sic 95.1 0.62 1.4E-05 36.2 10.8 21 354-374 111-131 (165)
254 COG3629 DnrI DNA-binding trans 95.0 0.16 3.4E-06 43.5 8.2 68 382-449 155-227 (280)
255 COG4649 Uncharacterized protei 95.0 1.2 2.5E-05 34.9 11.8 130 278-408 60-195 (221)
256 PF13512 TPR_18: Tetratricopep 94.9 0.74 1.6E-05 34.9 10.6 53 322-374 20-73 (142)
257 KOG1258 mRNA processing protei 94.9 3.6 7.8E-05 39.0 33.3 395 12-428 47-489 (577)
258 smart00299 CLH Clathrin heavy 94.8 1.3 2.9E-05 33.8 15.0 89 10-102 7-95 (140)
259 PF13512 TPR_18: Tetratricopep 94.8 1.2 2.7E-05 33.7 11.5 115 283-414 16-133 (142)
260 PF10300 DUF3808: Protein of u 94.8 3.9 8.4E-05 38.8 21.4 153 81-237 193-374 (468)
261 KOG1941 Acetylcholine receptor 94.7 2.3 5E-05 37.6 14.3 195 145-339 45-273 (518)
262 PRK11906 transcriptional regul 94.7 0.86 1.9E-05 41.9 12.4 158 278-438 252-431 (458)
263 KOG2066 Vacuolar assembly/sort 94.6 4.9 0.00011 39.4 27.1 102 17-120 363-467 (846)
264 PF04184 ST7: ST7 protein; In 94.6 1.4 3E-05 40.8 13.3 63 348-410 259-325 (539)
265 PF13176 TPR_7: Tetratricopept 94.5 0.078 1.7E-06 29.4 3.6 26 416-441 1-26 (36)
266 KOG2114 Vacuolar assembly/sort 94.4 5.8 0.00013 39.3 24.3 53 354-407 711-763 (933)
267 COG4105 ComL DNA uptake lipopr 94.3 2.8 6E-05 35.3 18.6 65 179-245 39-106 (254)
268 PF10602 RPN7: 26S proteasome 94.3 1.4 3E-05 35.4 11.7 94 279-374 38-139 (177)
269 KOG3941 Intermediate in Toll s 94.3 0.59 1.3E-05 39.5 9.6 98 162-261 53-173 (406)
270 COG3118 Thioredoxin domain-con 94.1 3.4 7.3E-05 35.6 15.3 54 117-171 143-196 (304)
271 COG0457 NrfG FOG: TPR repeat [ 94.1 3 6.5E-05 34.8 26.0 182 188-374 37-228 (291)
272 PF02259 FAT: FAT domain; Int 94.0 4.7 0.0001 36.6 19.6 148 276-426 145-304 (352)
273 KOG1464 COP9 signalosome, subu 93.9 3.5 7.6E-05 34.8 13.6 198 4-233 20-254 (440)
274 KOG1920 IkappaB kinase complex 93.8 9.4 0.0002 39.6 20.1 53 252-304 971-1026(1265)
275 COG4649 Uncharacterized protei 93.8 1.7 3.6E-05 34.1 10.4 118 256-374 68-193 (221)
276 COG2909 MalT ATP-dependent tra 93.8 8.1 0.00018 38.7 28.4 194 257-454 426-658 (894)
277 KOG2066 Vacuolar assembly/sort 93.7 7.6 0.00016 38.2 27.9 169 82-276 362-535 (846)
278 PF13170 DUF4003: Protein of u 93.7 4.5 9.8E-05 35.6 15.0 134 190-356 78-225 (297)
279 KOG2396 HAT (Half-A-TPR) repea 93.7 5.8 0.00013 36.8 31.8 242 191-442 299-558 (568)
280 KOG2610 Uncharacterized conser 93.7 4.5 9.8E-05 35.5 16.5 145 56-201 114-274 (491)
281 PF09205 DUF1955: Domain of un 93.6 2.2 4.8E-05 31.7 14.0 63 280-344 89-151 (161)
282 PF13428 TPR_14: Tetratricopep 93.4 0.33 7.2E-06 28.3 5.1 40 11-51 2-41 (44)
283 PF08631 SPO22: Meiosis protei 93.3 5.2 0.00011 35.0 24.1 160 278-441 85-273 (278)
284 PF00637 Clathrin: Region in C 93.3 0.069 1.5E-06 41.2 2.6 130 14-158 11-140 (143)
285 COG0457 NrfG FOG: TPR repeat [ 93.3 4.3 9.3E-05 33.8 24.2 163 175-340 60-230 (291)
286 KOG4234 TPR repeat-containing 93.2 0.6 1.3E-05 37.3 7.5 123 320-444 103-234 (271)
287 KOG0890 Protein kinase of the 93.2 18 0.00038 40.8 25.1 155 17-180 1390-1552(2382)
288 PRK11906 transcriptional regul 93.2 7.1 0.00015 36.2 17.7 139 262-405 274-432 (458)
289 PRK15180 Vi polysaccharide bio 93.1 1.6 3.4E-05 40.1 10.8 127 289-419 301-430 (831)
290 PRK15180 Vi polysaccharide bio 92.8 8 0.00017 35.8 26.8 113 57-170 301-418 (831)
291 PF02259 FAT: FAT domain; Int 92.7 7.6 0.00016 35.3 17.0 66 378-443 144-213 (352)
292 PF13170 DUF4003: Protein of u 92.5 5.1 0.00011 35.2 13.2 126 124-253 78-224 (297)
293 PF13176 TPR_7: Tetratricopept 92.3 0.37 8.1E-06 26.6 4.0 26 176-201 1-26 (36)
294 PF07719 TPR_2: Tetratricopept 92.1 0.36 7.7E-06 26.0 3.8 29 415-443 2-30 (34)
295 COG3629 DnrI DNA-binding trans 92.0 1.9 4E-05 37.2 9.6 76 280-356 156-235 (280)
296 PF00515 TPR_1: Tetratricopept 91.9 0.4 8.6E-06 25.9 3.8 29 415-443 2-30 (34)
297 PF10602 RPN7: 26S proteasome 91.9 3.1 6.6E-05 33.4 10.3 95 313-408 37-141 (177)
298 PRK09687 putative lyase; Provi 91.8 8.4 0.00018 33.7 26.8 78 247-327 143-221 (280)
299 PF07035 Mic1: Colon cancer-as 91.8 5.4 0.00012 31.5 15.7 56 250-305 93-148 (167)
300 PF02284 COX5A: Cytochrome c o 91.7 1.6 3.4E-05 30.7 7.1 60 295-356 28-87 (108)
301 COG4785 NlpI Lipoprotein NlpI, 91.7 6.5 0.00014 32.2 13.0 29 414-442 237-265 (297)
302 cd00923 Cyt_c_Oxidase_Va Cytoc 91.5 1.5 3.3E-05 30.4 6.8 63 292-356 22-84 (103)
303 PF13431 TPR_17: Tetratricopep 91.4 0.27 5.9E-06 26.7 2.7 30 133-163 4-33 (34)
304 PF00637 Clathrin: Region in C 91.4 0.21 4.5E-06 38.6 3.1 87 113-202 12-98 (143)
305 PF09613 HrpB1_HrpK: Bacterial 91.4 5.7 0.00012 30.9 12.2 83 323-408 21-105 (160)
306 PF09613 HrpB1_HrpK: Bacterial 91.3 2 4.4E-05 33.3 8.2 80 350-429 9-93 (160)
307 PF07719 TPR_2: Tetratricopept 91.3 0.65 1.4E-05 24.9 4.3 32 382-413 3-34 (34)
308 KOG0890 Protein kinase of the 91.3 30 0.00066 39.1 22.8 314 113-445 1388-1733(2382)
309 KOG4570 Uncharacterized conser 91.2 3.2 6.9E-05 36.0 9.9 99 241-340 59-163 (418)
310 PF13374 TPR_10: Tetratricopep 91.1 0.47 1E-05 27.0 3.8 29 414-442 2-30 (42)
311 PF00515 TPR_1: Tetratricopept 90.9 0.56 1.2E-05 25.3 3.7 31 382-412 3-33 (34)
312 KOG1464 COP9 signalosome, subu 90.7 9.5 0.00021 32.4 15.2 152 250-409 149-332 (440)
313 PRK11619 lytic murein transgly 90.5 20 0.00043 35.7 35.3 420 13-449 37-511 (644)
314 PF07721 TPR_4: Tetratricopept 90.4 0.34 7.5E-06 24.4 2.4 24 415-438 2-25 (26)
315 TIGR02561 HrpB1_HrpK type III 90.4 1.6 3.5E-05 33.2 6.8 100 348-448 7-111 (153)
316 KOG4648 Uncharacterized conser 90.3 0.82 1.8E-05 39.9 5.8 97 319-418 104-203 (536)
317 KOG0403 Neoplastic transformat 90.1 15 0.00033 33.7 19.0 91 351-444 512-612 (645)
318 PF02284 COX5A: Cytochrome c o 89.9 2.5 5.4E-05 29.8 6.8 48 375-422 40-87 (108)
319 PF07035 Mic1: Colon cancer-as 89.8 8.5 0.00018 30.4 15.1 134 31-202 15-148 (167)
320 PRK09687 putative lyase; Provi 89.8 13 0.00028 32.5 25.5 73 245-322 205-277 (280)
321 PF13174 TPR_6: Tetratricopept 89.7 0.47 1E-05 25.2 2.8 29 416-444 2-30 (33)
322 PF04184 ST7: ST7 protein; In 89.5 18 0.0004 33.9 19.8 145 180-340 174-323 (539)
323 cd00923 Cyt_c_Oxidase_Va Cytoc 89.3 2.9 6.4E-05 29.1 6.7 48 375-422 37-84 (103)
324 TIGR03504 FimV_Cterm FimV C-te 89.2 0.7 1.5E-05 26.9 3.2 28 418-445 3-30 (44)
325 KOG4234 TPR repeat-containing 89.1 10 0.00022 30.8 10.4 92 285-380 103-201 (271)
326 TIGR02561 HrpB1_HrpK type III 88.8 3.1 6.6E-05 31.8 7.2 72 313-389 8-85 (153)
327 PF13181 TPR_8: Tetratricopept 88.6 1.1 2.4E-05 24.0 3.8 29 415-443 2-30 (34)
328 KOG0276 Vesicle coat complex C 88.2 6.3 0.00014 37.5 10.2 151 87-272 597-747 (794)
329 KOG1586 Protein required for f 88.1 14 0.00031 30.8 13.2 49 362-410 128-184 (288)
330 KOG1550 Extracellular protein 88.1 28 0.0006 34.1 15.5 154 288-447 260-430 (552)
331 PF04097 Nic96: Nup93/Nic96; 87.7 31 0.00068 34.2 23.2 49 9-58 110-158 (613)
332 KOG4648 Uncharacterized conser 87.6 3.6 7.9E-05 36.1 7.8 94 284-381 104-199 (536)
333 PF13181 TPR_8: Tetratricopept 87.2 1.4 3E-05 23.6 3.6 30 382-411 3-32 (34)
334 COG3947 Response regulator con 86.3 18 0.0004 31.2 11.0 57 178-236 283-339 (361)
335 COG3947 Response regulator con 85.7 4.1 8.9E-05 34.9 7.0 60 382-441 281-340 (361)
336 PF13374 TPR_10: Tetratricopep 85.4 2.2 4.7E-05 24.1 4.1 28 175-202 3-30 (42)
337 PF13174 TPR_6: Tetratricopept 85.2 1.9 4.2E-05 22.7 3.6 27 386-412 6-32 (33)
338 COG4785 NlpI Lipoprotein NlpI, 84.2 22 0.00048 29.3 14.2 28 313-340 238-265 (297)
339 PF11207 DUF2989: Protein of u 83.7 8.9 0.00019 31.2 7.8 77 357-434 116-198 (203)
340 PHA02875 ankyrin repeat protei 82.8 27 0.0006 32.6 12.4 144 18-170 7-159 (413)
341 KOG4570 Uncharacterized conser 82.6 13 0.00028 32.5 8.7 96 276-374 63-161 (418)
342 PF10345 Cohesin_load: Cohesin 81.8 59 0.0013 32.4 36.4 184 257-441 372-604 (608)
343 COG1747 Uncharacterized N-term 81.6 48 0.0011 31.3 19.5 159 75-238 65-233 (711)
344 KOG4077 Cytochrome c oxidase, 81.3 11 0.00023 27.9 6.7 71 295-376 67-137 (149)
345 PF04097 Nic96: Nup93/Nic96; 81.2 61 0.0013 32.2 22.7 47 75-121 110-158 (613)
346 PF10579 Rapsyn_N: Rapsyn N-te 80.4 4.6 0.0001 26.9 4.3 46 289-334 18-65 (80)
347 cd08819 CARD_MDA5_2 Caspase ac 80.1 15 0.00032 25.2 6.7 67 28-96 20-86 (88)
348 KOG4642 Chaperone-dependent E3 79.8 7.3 0.00016 32.5 6.1 116 322-440 20-143 (284)
349 KOG0276 Vesicle coat complex C 79.4 22 0.00047 34.2 9.7 150 22-200 598-747 (794)
350 PF11207 DUF2989: Protein of u 79.3 20 0.00044 29.2 8.4 43 325-367 153-197 (203)
351 cd08819 CARD_MDA5_2 Caspase ac 78.2 15 0.00033 25.1 6.3 66 127-194 21-86 (88)
352 PF13934 ELYS: Nuclear pore co 77.7 42 0.0009 28.3 10.8 21 354-374 114-134 (226)
353 KOG1114 Tripeptidyl peptidase 77.6 89 0.0019 32.2 13.5 71 294-364 1213-1283(1304)
354 TIGR03504 FimV_Cterm FimV C-te 77.6 7.1 0.00015 22.7 4.1 26 15-40 4-29 (44)
355 smart00028 TPR Tetratricopepti 77.5 3.9 8.5E-05 20.7 3.1 27 416-442 3-29 (34)
356 COG2976 Uncharacterized protei 77.1 38 0.00082 27.5 13.7 89 116-204 97-189 (207)
357 COG1747 Uncharacterized N-term 76.8 69 0.0015 30.4 22.7 165 251-422 71-247 (711)
358 smart00386 HAT HAT (Half-A-TPR 76.3 7.9 0.00017 20.0 4.0 30 394-423 1-30 (33)
359 KOG0545 Aryl-hydrocarbon recep 76.3 16 0.00034 30.7 7.1 54 390-443 240-293 (329)
360 COG2976 Uncharacterized protei 76.0 41 0.00088 27.3 13.1 56 252-307 132-189 (207)
361 PF07163 Pex26: Pex26 protein; 75.9 40 0.00088 29.1 9.5 84 252-335 89-181 (309)
362 PF11846 DUF3366: Domain of un 75.8 11 0.00023 30.9 6.3 51 324-374 120-170 (193)
363 PF14561 TPR_20: Tetratricopep 75.6 11 0.00024 26.2 5.4 50 381-430 23-74 (90)
364 KOG2063 Vacuolar assembly/sort 75.4 1.1E+02 0.0023 31.8 14.5 28 176-203 506-533 (877)
365 COG4455 ImpE Protein of avirul 75.4 46 0.001 27.6 12.7 60 280-340 4-63 (273)
366 PF11848 DUF3368: Domain of un 75.1 13 0.00028 22.2 4.9 38 17-54 9-46 (48)
367 PF11838 ERAP1_C: ERAP1-like C 74.7 63 0.0014 28.9 20.1 59 350-408 171-229 (324)
368 PF13762 MNE1: Mitochondrial s 74.6 37 0.0008 26.1 10.7 77 249-325 42-128 (145)
369 PF14853 Fis1_TPR_C: Fis1 C-te 73.9 9.7 0.00021 23.3 4.2 32 386-417 7-38 (53)
370 KOG0687 26S proteasome regulat 73.7 65 0.0014 28.6 12.0 94 313-408 105-209 (393)
371 PF11846 DUF3366: Domain of un 73.6 19 0.00042 29.4 7.4 37 375-411 139-175 (193)
372 PF12862 Apc5: Anaphase-promot 73.4 19 0.00041 25.2 6.3 22 419-440 46-67 (94)
373 PF04190 DUF410: Protein of un 73.4 60 0.0013 28.1 15.8 49 141-189 88-136 (260)
374 PF06552 TOM20_plant: Plant sp 73.2 43 0.00094 26.8 8.6 44 396-446 96-139 (186)
375 PF09986 DUF2225: Uncharacteri 72.8 34 0.00073 28.5 8.5 35 414-448 165-199 (214)
376 PF08311 Mad3_BUB1_I: Mad3/BUB 72.5 38 0.00082 25.4 8.6 42 398-439 81-124 (126)
377 COG4455 ImpE Protein of avirul 72.4 55 0.0012 27.2 11.6 53 319-373 8-60 (273)
378 PF07163 Pex26: Pex26 protein; 72.3 34 0.00073 29.5 8.2 83 319-403 90-181 (309)
379 KOG2396 HAT (Half-A-TPR) repea 72.1 91 0.002 29.6 17.9 80 160-241 445-527 (568)
380 PF10579 Rapsyn_N: Rapsyn N-te 72.0 6.2 0.00014 26.3 3.2 46 392-437 18-66 (80)
381 PRK10941 hypothetical protein; 72.0 28 0.0006 30.2 8.1 59 385-443 186-244 (269)
382 PF13762 MNE1: Mitochondrial s 71.5 44 0.00095 25.7 8.1 50 107-156 78-128 (145)
383 KOG3807 Predicted membrane pro 70.5 45 0.00097 29.5 8.8 54 321-374 284-337 (556)
384 KOG2063 Vacuolar assembly/sort 70.1 1.4E+02 0.003 30.9 18.7 163 279-442 506-712 (877)
385 PF10366 Vps39_1: Vacuolar sor 69.5 40 0.00087 24.4 7.8 27 279-305 41-67 (108)
386 PF11848 DUF3368: Domain of un 69.4 21 0.00046 21.2 5.0 33 288-320 13-45 (48)
387 KOG0403 Neoplastic transformat 69.1 1E+02 0.0022 28.8 15.1 70 250-323 513-585 (645)
388 PF06552 TOM20_plant: Plant sp 68.7 25 0.00053 28.1 6.4 48 395-442 50-108 (186)
389 KOG4077 Cytochrome c oxidase, 67.8 37 0.00079 25.3 6.5 48 374-421 78-125 (149)
390 KOG2297 Predicted translation 67.7 86 0.0019 27.5 11.5 20 174-193 321-340 (412)
391 PF13929 mRNA_stabil: mRNA sta 67.5 85 0.0018 27.4 17.7 113 262-374 144-264 (292)
392 PF09670 Cas_Cas02710: CRISPR- 67.2 1.1E+02 0.0023 28.4 11.7 52 288-340 142-197 (379)
393 PF09477 Type_III_YscG: Bacter 66.0 47 0.001 23.9 8.8 81 121-204 19-99 (116)
394 PF10366 Vps39_1: Vacuolar sor 65.6 48 0.001 24.0 7.0 27 176-202 41-67 (108)
395 TIGR02508 type_III_yscG type I 65.0 47 0.001 23.6 8.5 60 253-315 46-105 (115)
396 COG2909 MalT ATP-dependent tra 65.0 1.7E+02 0.0037 30.0 25.5 83 81-169 289-386 (894)
397 cd00280 TRFH Telomeric Repeat 64.8 49 0.0011 26.6 7.2 19 53-71 119-137 (200)
398 PF12862 Apc5: Anaphase-promot 64.5 45 0.00097 23.3 6.7 19 390-408 51-69 (94)
399 TIGR02508 type_III_yscG type I 64.4 49 0.0011 23.5 9.2 86 123-213 20-105 (115)
400 PRK10564 maltose regulon perip 63.5 16 0.00035 31.8 4.9 40 279-318 259-298 (303)
401 PF14689 SPOB_a: Sensor_kinase 63.3 13 0.00029 23.6 3.4 23 282-304 28-50 (62)
402 KOG4507 Uncharacterized conser 62.7 47 0.001 32.0 8.0 82 361-442 620-704 (886)
403 PRK10564 maltose regulon perip 61.2 7.7 0.00017 33.7 2.6 37 413-449 256-292 (303)
404 KOG2471 TPR repeat-containing 61.1 1.5E+02 0.0033 28.1 13.7 104 255-361 249-382 (696)
405 PF13929 mRNA_stabil: mRNA sta 60.9 1.2E+02 0.0025 26.6 22.5 113 190-302 144-263 (292)
406 KOG0376 Serine-threonine phosp 59.8 8.1 0.00018 35.7 2.7 96 319-417 11-109 (476)
407 PRK13184 pknD serine/threonine 59.2 2.4E+02 0.0052 29.8 23.8 128 313-440 689-830 (932)
408 PF10255 Paf67: RNA polymerase 59.1 1.4E+02 0.0031 27.7 10.4 23 80-102 126-148 (404)
409 KOG1308 Hsp70-interacting prot 58.8 7.3 0.00016 34.4 2.1 118 322-442 124-243 (377)
410 PF14689 SPOB_a: Sensor_kinase 58.8 24 0.00051 22.4 4.0 30 311-340 22-51 (62)
411 KOG1586 Protein required for f 58.6 1.1E+02 0.0024 25.8 17.8 12 90-101 28-39 (288)
412 KOG2908 26S proteasome regulat 58.3 1.4E+02 0.003 26.8 10.2 51 358-408 85-143 (380)
413 cd00280 TRFH Telomeric Repeat 58.3 80 0.0017 25.4 7.4 21 320-340 119-139 (200)
414 KOG4507 Uncharacterized conser 58.2 48 0.001 32.0 7.2 101 324-425 619-721 (886)
415 PRK09169 hypothetical protein; 58.0 3.6E+02 0.0079 31.5 38.6 366 75-440 245-692 (2316)
416 PF04190 DUF410: Protein of un 56.9 1.3E+02 0.0028 26.0 16.7 159 258-443 2-170 (260)
417 KOG2300 Uncharacterized conser 56.7 1.8E+02 0.0039 27.6 27.2 149 288-438 334-509 (629)
418 KOG2422 Uncharacterized conser 56.7 1.5E+02 0.0032 28.8 10.0 85 17-102 349-445 (665)
419 KOG0551 Hsp90 co-chaperone CNS 56.7 93 0.002 27.8 8.2 90 351-440 84-179 (390)
420 smart00804 TAP_C C-terminal do 56.5 12 0.00026 23.9 2.3 25 187-211 38-62 (63)
421 COG5108 RPO41 Mitochondrial DN 56.4 58 0.0013 31.9 7.5 70 50-119 33-114 (1117)
422 PF07575 Nucleopor_Nup85: Nup8 55.4 2.2E+02 0.0048 28.2 21.2 156 278-452 373-533 (566)
423 TIGR02270 conserved hypothetic 55.4 1.8E+02 0.004 27.2 24.4 180 209-406 99-278 (410)
424 PF11663 Toxin_YhaV: Toxin wit 55.3 13 0.00028 27.9 2.6 33 21-55 106-138 (140)
425 KOG0292 Vesicle coat complex C 55.0 1.3E+02 0.0029 30.8 9.8 177 186-408 605-781 (1202)
426 PRK12798 chemotaxis protein; R 54.6 1.8E+02 0.004 27.0 22.7 185 259-445 125-326 (421)
427 KOG3824 Huntingtin interacting 54.5 28 0.00061 30.4 4.8 45 392-436 128-172 (472)
428 PF15469 Sec5: Exocyst complex 53.2 1.2E+02 0.0026 24.4 9.0 28 428-455 153-180 (182)
429 cd08326 CARD_CASP9 Caspase act 52.9 66 0.0014 22.0 5.6 63 29-95 18-80 (84)
430 PF14853 Fis1_TPR_C: Fis1 C-te 52.3 53 0.0011 20.1 4.6 33 179-214 6-38 (53)
431 KOG4642 Chaperone-dependent E3 52.2 1.5E+02 0.0032 25.2 10.4 115 287-406 20-143 (284)
432 PF14669 Asp_Glu_race_2: Putat 52.0 1.3E+02 0.0028 24.5 13.1 23 251-273 137-159 (233)
433 COG2178 Predicted RNA-binding 51.2 1.3E+02 0.0029 24.4 9.9 17 425-441 132-148 (204)
434 COG4976 Predicted methyltransf 50.9 39 0.00085 28.2 4.9 56 359-414 6-63 (287)
435 PRK09857 putative transposase; 50.4 1.2E+02 0.0026 26.8 8.3 64 385-448 211-274 (292)
436 PF09454 Vps23_core: Vps23 cor 50.3 45 0.00097 21.5 4.2 52 6-58 4-55 (65)
437 COG0735 Fur Fe2+/Zn2+ uptake r 49.9 1.2E+02 0.0026 23.4 7.5 31 284-314 27-57 (145)
438 PRK11639 zinc uptake transcrip 47.8 1.2E+02 0.0025 24.2 7.2 36 291-326 39-74 (169)
439 KOG3807 Predicted membrane pro 47.6 2.1E+02 0.0045 25.6 8.9 54 216-269 281-334 (556)
440 PF11817 Foie-gras_1: Foie gra 47.0 69 0.0015 27.5 6.2 18 321-338 187-204 (247)
441 KOG2300 Uncharacterized conser 46.8 2.7E+02 0.0058 26.6 29.2 120 324-443 335-474 (629)
442 PF09670 Cas_Cas02710: CRISPR- 46.4 2.2E+02 0.0048 26.3 9.8 56 18-74 139-198 (379)
443 PRK13342 recombination factor 46.4 2.6E+02 0.0056 26.3 14.0 168 189-374 152-331 (413)
444 PF11838 ERAP1_C: ERAP1-like C 45.9 2.2E+02 0.0048 25.4 18.8 81 226-306 146-230 (324)
445 KOG4814 Uncharacterized conser 45.8 1E+02 0.0022 30.3 7.3 85 359-443 365-457 (872)
446 PF11817 Foie-gras_1: Foie gra 45.3 1.2E+02 0.0026 26.0 7.4 51 390-440 188-244 (247)
447 PF04910 Tcf25: Transcriptiona 45.3 2.5E+02 0.0054 25.8 13.3 54 355-408 110-167 (360)
448 KOG4279 Serine/threonine prote 45.2 3.5E+02 0.0075 27.5 11.8 179 230-415 183-401 (1226)
449 PRK13800 putative oxidoreducta 44.9 4.1E+02 0.0089 28.2 26.2 256 163-442 624-880 (897)
450 COG5108 RPO41 Mitochondrial DN 44.8 1.3E+02 0.0029 29.7 7.9 74 113-186 33-115 (1117)
451 PF10255 Paf67: RNA polymerase 44.8 2.7E+02 0.0058 26.0 12.7 57 282-338 127-190 (404)
452 PF10345 Cohesin_load: Cohesin 44.7 3.4E+02 0.0073 27.2 29.8 49 324-372 373-428 (608)
453 PRK10941 hypothetical protein; 44.5 2.1E+02 0.0047 24.9 9.6 77 177-255 184-260 (269)
454 COG5187 RPN7 26S proteasome re 44.5 1.8E+02 0.0039 25.4 7.9 29 312-340 115-143 (412)
455 KOG2297 Predicted translation 44.5 2.3E+02 0.0049 25.1 11.0 22 276-297 320-341 (412)
456 cd07153 Fur_like Ferric uptake 43.7 64 0.0014 23.5 4.9 48 15-62 5-52 (116)
457 PF07720 TPR_3: Tetratricopept 43.6 48 0.001 18.3 3.1 23 416-438 3-25 (36)
458 PRK14956 DNA polymerase III su 42.7 2.5E+02 0.0055 26.9 9.5 36 278-313 249-284 (484)
459 PF14863 Alkyl_sulf_dimr: Alky 41.5 1.5E+02 0.0033 22.7 6.6 64 364-430 57-120 (141)
460 cd07153 Fur_like Ferric uptake 41.5 82 0.0018 22.9 5.2 47 283-329 6-52 (116)
461 PF04034 DUF367: Domain of unk 41.2 1.5E+02 0.0033 22.2 7.8 59 348-406 66-125 (127)
462 PF14669 Asp_Glu_race_2: Putat 41.2 2E+02 0.0043 23.5 14.4 69 3-71 1-77 (233)
463 PF09868 DUF2095: Uncharacteri 40.9 1.3E+02 0.0029 21.9 5.6 39 15-54 66-104 (128)
464 KOG2471 TPR repeat-containing 40.9 3.3E+02 0.0072 26.0 16.2 38 390-427 345-382 (696)
465 KOG4567 GTPase-activating prot 40.9 2.6E+02 0.0057 24.8 9.9 72 297-374 263-344 (370)
466 KOG0991 Replication factor C, 40.8 2.3E+02 0.0049 24.1 11.5 125 251-380 135-273 (333)
467 KOG0687 26S proteasome regulat 40.4 2.7E+02 0.0059 24.9 12.7 91 248-340 106-209 (393)
468 PF03943 TAP_C: TAP C-terminal 40.3 12 0.00025 22.7 0.4 24 187-210 26-49 (51)
469 COG5159 RPN6 26S proteasome re 40.0 2.6E+02 0.0056 24.5 21.1 201 115-340 10-234 (421)
470 PF04090 RNA_pol_I_TF: RNA pol 39.9 1.2E+02 0.0025 25.0 6.0 50 12-62 43-93 (199)
471 COG0735 Fur Fe2+/Zn2+ uptake r 39.6 80 0.0017 24.3 5.0 37 34-71 10-46 (145)
472 PF04910 Tcf25: Transcriptiona 39.5 3.1E+02 0.0066 25.2 13.9 116 311-442 39-167 (360)
473 PF10475 DUF2450: Protein of u 39.4 1.7E+02 0.0037 25.8 7.7 52 149-202 104-155 (291)
474 KOG0508 Ankyrin repeat protein 38.5 1.5E+02 0.0033 27.9 7.0 16 56-71 50-65 (615)
475 smart00777 Mad3_BUB1_I Mad3/BU 38.4 1.7E+02 0.0037 21.9 7.9 40 399-438 82-123 (125)
476 PF01475 FUR: Ferric uptake re 38.4 69 0.0015 23.6 4.4 47 282-328 12-58 (120)
477 COG5159 RPN6 26S proteasome re 38.2 2.8E+02 0.006 24.4 17.0 33 180-213 9-41 (421)
478 PF12069 DUF3549: Protein of u 37.7 3.1E+02 0.0068 24.8 12.6 31 310-340 228-258 (340)
479 PF01475 FUR: Ferric uptake re 37.6 83 0.0018 23.1 4.8 48 14-61 11-58 (120)
480 PRK09462 fur ferric uptake reg 37.4 84 0.0018 24.3 4.9 59 1-59 8-66 (148)
481 KOG2908 26S proteasome regulat 37.1 3.2E+02 0.0069 24.7 10.8 61 253-313 82-156 (380)
482 PF08311 Mad3_BUB1_I: Mad3/BUB 36.9 1.8E+02 0.0039 21.8 8.1 42 192-233 81-122 (126)
483 KOG2659 LisH motif-containing 36.6 2.6E+02 0.0056 23.5 10.0 104 336-439 14-128 (228)
484 PHA02791 ankyrin-like protein; 36.4 3E+02 0.0065 24.2 10.7 20 149-168 131-150 (284)
485 PF11768 DUF3312: Protein of u 36.4 4.1E+02 0.009 25.8 10.9 24 250-273 412-435 (545)
486 KOG3364 Membrane protein invol 36.3 1.9E+02 0.0042 22.0 7.0 75 345-419 29-110 (149)
487 KOG0686 COP9 signalosome, subu 36.2 3.6E+02 0.0078 25.1 13.1 176 176-388 152-352 (466)
488 PRK09169 hypothetical protein; 35.8 8E+02 0.017 29.0 39.1 431 10-440 122-650 (2316)
489 PF13934 ELYS: Nuclear pore co 35.6 2.7E+02 0.0059 23.5 12.8 69 318-390 114-182 (226)
490 KOG4567 GTPase-activating prot 35.4 3.2E+02 0.007 24.3 9.3 70 231-302 264-343 (370)
491 KOG1498 26S proteasome regulat 35.4 3.6E+02 0.0079 24.9 13.4 85 283-374 137-238 (439)
492 KOG2034 Vacuolar sorting prote 35.1 5.4E+02 0.012 26.8 23.5 16 346-361 626-641 (911)
493 PRK13800 putative oxidoreducta 35.1 5.8E+02 0.013 27.1 27.7 248 140-408 632-880 (897)
494 PRK11639 zinc uptake transcrip 34.7 2.3E+02 0.0051 22.5 7.9 62 302-365 16-77 (169)
495 COG5191 Uncharacterized conser 34.5 87 0.0019 27.6 4.7 80 343-422 102-184 (435)
496 KOG0376 Serine-threonine phosp 34.5 94 0.002 29.2 5.3 100 254-358 12-115 (476)
497 PF09454 Vps23_core: Vps23 cor 34.4 1.1E+02 0.0025 19.6 4.2 50 378-427 6-55 (65)
498 COG4259 Uncharacterized protei 34.3 1.4E+02 0.0031 21.2 4.8 45 395-439 52-97 (121)
499 PF15297 CKAP2_C: Cytoskeleton 34.2 2.7E+02 0.0058 25.2 7.7 27 382-408 142-168 (353)
500 TIGR03184 DNA_S_dndE DNA sulfu 34.1 1E+02 0.0022 22.2 4.3 35 291-325 61-97 (105)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.3e-77 Score=584.62 Aligned_cols=455 Identities=29% Similarity=0.549 Sum_probs=448.2
Q ss_pred CCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHH
Q 038303 5 PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIIS 84 (461)
Q Consensus 5 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~ 84 (461)
++.||..+|+.++.+|++.++++.+.+++..|.+.|+.|+..+|+.|+.+|++.|+++.|.++|++|..||..+||++|.
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~ 197 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIG 197 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCChHHHHHHHhcC---CCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhh
Q 038303 85 GLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLAS 161 (461)
Q Consensus 85 ~~~~~~~~~~a~~~~~~m---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 161 (461)
+|++.|++++|+++|++| |..||..||+.++.+|++.|+.+.+.+++..+.+.|..||..+|++|+++|++.|++++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 277 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence 999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcC
Q 038303 162 CGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241 (461)
Q Consensus 162 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ 241 (461)
|.++|++|.++|..+||+||.+|++.|++++|.++|++|.+.| +.||..||+.++.+|++.|+++.|.+++..+.+ .|
T Consensus 278 A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~-~g 355 (697)
T PLN03081 278 ARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG-VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR-TG 355 (697)
T ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH-hC
Confidence 9999999999999999999999999999999999999999999 999999999999999999999999999999999 89
Q ss_pred CCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 038303 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISA 321 (461)
Q Consensus 242 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 321 (461)
+.|+..+++.|+.+|++.|++++|.++|++|.++|..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+
T Consensus 356 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 435 (697)
T PLN03081 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435 (697)
T ss_pred CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCchhhHHHHHHHHHHhcCChHHHHH
Q 038303 322 CSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDR 401 (461)
Q Consensus 322 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 401 (461)
|++.|.+++|.++|+.|.+..|+.|+..+|+.++++|++.|++++|.+++++|+..|+..+|++++.+|...|+.+.|..
T Consensus 436 ~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~ 515 (697)
T PLN03081 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRL 515 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999999886899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcCCccccCccccccCCCCC
Q 038303 402 IRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461 (461)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~ 461 (461)
+++++.+..|.+..+|..++.+|++.|++++|.+++++|.++|+++.|+++|+++++.+|
T Consensus 516 ~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~ 575 (697)
T PLN03081 516 AAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDH 575 (697)
T ss_pred HHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEE
Confidence 999999999999999999999999999999999999999999999999999999998875
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.5e-75 Score=586.22 Aligned_cols=457 Identities=36% Similarity=0.673 Sum_probs=448.6
Q ss_pred CCCCCCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHH
Q 038303 1 MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWT 80 (461)
Q Consensus 1 M~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (461)
|++.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|..||..+||
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n 358 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWT 358 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHhcC---CCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcC
Q 038303 81 TIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCG 157 (461)
Q Consensus 81 ~li~~~~~~~~~~~a~~~~~~m---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 157 (461)
++|.+|++.|++++|+++|++| ++.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|++|+++|++.|
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHH
Q 038303 158 SLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237 (461)
Q Consensus 158 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~ 237 (461)
++++|.++|++|.++|..+|+.+|.+|++.|+.++|+.+|++|.. + ++||..||+.++.+|++.|+++.+.+++..+.
T Consensus 439 ~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~-~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 439 CIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-T-LKPNSVTLIAALSACARIGALMCGKEIHAHVL 516 (857)
T ss_pred CHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-C-CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence 999999999999999999999999999999999999999999986 4 99999999999999999999999999999999
Q ss_pred hhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHH
Q 038303 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIA 317 (461)
Q Consensus 238 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 317 (461)
+ .|+.++..++++|+.+|++.|++++|.++|+.+ .+|..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.
T Consensus 517 ~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 594 (857)
T PLN03077 517 R-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594 (857)
T ss_pred H-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence 9 899999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCchhhHHHHHHHHHHhcCChH
Q 038303 318 LISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397 (461)
Q Consensus 318 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 397 (461)
++.+|++.|++++|.++|+.|.+..|+.|+..+|+.++.+|++.|++++|.+++++|+.+||..+|++|+.+|..+|+.+
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e 674 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVE 674 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChH
Confidence 99999999999999999999996589999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcCCccccCccccccCCCCC
Q 038303 398 MFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIEVNPSIF 461 (461)
Q Consensus 398 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~ 461 (461)
.++...+++.+..|.+...|..+...|.+.|+|++|.++.+.|+++|++++|++|||++++++|
T Consensus 675 ~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~ 738 (857)
T PLN03077 675 LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVH 738 (857)
T ss_pred HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999876
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.5e-70 Score=548.58 Aligned_cols=450 Identities=27% Similarity=0.445 Sum_probs=419.7
Q ss_pred CCCCCCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHH
Q 038303 1 MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWT 80 (461)
Q Consensus 1 M~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (461)
|.+.|+.||..||+.++++|+..+++..+.+++..|.+.|+.|+..+|++|+.+|++.|++++|.++|++|..||..+||
T Consensus 178 M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n 257 (857)
T PLN03077 178 MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWN 257 (857)
T ss_pred HHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhH
Confidence 44557777777777777777777777777777777777777778888899999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHhcC---CCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcC
Q 038303 81 TIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCG 157 (461)
Q Consensus 81 ~li~~~~~~~~~~~a~~~~~~m---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 157 (461)
++|.+|++.|++++|+++|++| |+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+||+|+.+|++.|
T Consensus 258 ~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 337 (857)
T PLN03077 258 AMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG 337 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcC
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHH
Q 038303 158 SLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237 (461)
Q Consensus 158 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~ 237 (461)
++++|.++|++|.+||..+||++|.+|++.|++++|+++|++|.+.| +.||..||+.++.+|++.|+++.+.++++.+.
T Consensus 338 ~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~ 416 (857)
T PLN03077 338 SWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN-VSPDEITIASVLSACACLGDLDVGVKLHELAE 416 (857)
T ss_pred CHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCCceeHHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred hhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHH
Q 038303 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIA 317 (461)
Q Consensus 238 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 317 (461)
+ .|+.|+..+++.|+.+|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.
T Consensus 417 ~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~ 494 (857)
T PLN03077 417 R-KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIA 494 (857)
T ss_pred H-hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHH
Confidence 9 899999999999999999999999999999999999999999999999999999999999999986 59999999999
Q ss_pred HHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCchhhHHHHHHHHHHhcCChH
Q 038303 318 LISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 397 (461)
Q Consensus 318 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 397 (461)
++.+|++.|+++.+.+++..+.+ .|+.++..++++|+.+|++.|++++|.++|+++ .||..+|++++.+|++.|+.+
T Consensus 495 lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~ 571 (857)
T PLN03077 495 ALSACARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGS 571 (857)
T ss_pred HHHHHhhhchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHH
Confidence 99999999999999999999998 799999999999999999999999999999998 789999999999999999999
Q ss_pred HHHHHHHHHhh-cCCCChhHHHHHHHHHhccCChhhHHHHHHHHH-HcCCccccCcccccc
Q 038303 398 MFDRIRQDLVN-KKGVSVGTFALMSNTFAGADRWEDTNKIRDEIR-RMGLKKKTGCSWIEV 456 (461)
Q Consensus 398 ~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~~~~~~~ 456 (461)
+|.++|++|.+ +..||..+|..++.+|.+.|++++|.++|++|. +.|+.|+..++..+|
T Consensus 572 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv 632 (857)
T PLN03077 572 MAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632 (857)
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999887 457888899999999999999999999999998 678988876554433
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.9e-67 Score=515.02 Aligned_cols=438 Identities=15% Similarity=0.215 Sum_probs=414.8
Q ss_pred CCcchHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCceeHHHHH
Q 038303 8 YNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV----FPDVVSWTTII 83 (461)
Q Consensus 8 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li 83 (461)
||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||..+|+.+|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999994 69999999999
Q ss_pred HHHHcCCChHHHHHHHhcC---CCCCCchhHHHHHHHhcccchhHHHHHHHHHHHh--hcCCCChhHHHHHHHHHHHcCC
Q 038303 84 SGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR--NLNENNIILDNAILDFYIRCGS 158 (461)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~m---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~ 158 (461)
.+|++.|++++|+++|++| ++.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|++++.+|++.|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 9999999999999999999 9999999999999999999999999999999986 6789999999999999999999
Q ss_pred hhhHHHHHhcCCC----CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHH
Q 038303 159 LASCGYLFVKMPK----RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234 (461)
Q Consensus 159 ~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~ 234 (461)
+++|.++|++|.+ |+..+|+.+|.+|++.|++++|.++|++|.+.| +.||..||+.++.+|++.|+++.|.++++
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G-v~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG-VKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999985 778999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHcc----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 038303 235 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA----YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP 310 (461)
Q Consensus 235 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 310 (461)
.|.+ .|+.|+..+|+.||.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.+.|+.|
T Consensus 674 eM~k-~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 674 DARK-QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred HHHH-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 9999 8999999999999999999999999999999995 6899999999999999999999999999999999999
Q ss_pred CHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhh----c-------------------CCHHHH
Q 038303 311 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR----A-------------------GLLEEA 367 (461)
Q Consensus 311 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A 367 (461)
|..||+.++.+|++.|+++.|.++|+.|.+ .|+.||..+|+.++..|.+ + +..+.|
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~A 831 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWA 831 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHH
Confidence 999999999999999999999999999999 8999999999999876432 1 124679
Q ss_pred HHHHHhC---CCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhh-cCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 038303 368 EAFIREM---PIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVN-KKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 368 ~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 443 (461)
..+|++| ++.||..+|+.++.++.+.+..+.+..+++.+.. ..+++..+|+.++.++.+. .++|..++++|...
T Consensus 832 l~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 832 LMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASL 909 (1060)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHc
Confidence 9999999 8899999999999888888999999999988775 5688899999999998432 36899999999999
Q ss_pred CCccccC
Q 038303 444 GLKKKTG 450 (461)
Q Consensus 444 g~~~~~~ 450 (461)
|+.|+..
T Consensus 910 Gi~p~~~ 916 (1060)
T PLN03218 910 GVVPSVS 916 (1060)
T ss_pred CCCCCcc
Confidence 9999986
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.8e-67 Score=514.62 Aligned_cols=448 Identities=13% Similarity=0.158 Sum_probs=423.7
Q ss_pred CCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHH
Q 038303 6 SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGH-LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIIS 84 (461)
Q Consensus 6 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~ 84 (461)
-.++...|..++..|++.|++++|+++|++|.+.|+ .++..+++.++..|.+.|.+++|..+|+.|..||..+|+.++.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456788899999999999999999999999999986 4678888899999999999999999999999999999999999
Q ss_pred HHHcCCChHHHHHHHhcC---CCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhh
Q 038303 85 GLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLAS 161 (461)
Q Consensus 85 ~~~~~~~~~~a~~~~~~m---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 161 (461)
+|++.|++++|.++|++| |+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCC----CchhHHHHHHHHHHhcCChHHHHHHHHHHHh--cCCCCCChhhHHHHHHHhhccchhhhHHHHHHH
Q 038303 162 CGYLFVKMPK----RNVVSWTTMIGGYAERGFCKEAVSVFQEMEK--TKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235 (461)
Q Consensus 162 a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~ 235 (461)
|.++|++|.+ ||..+|+.||.+|++.|++++|.++|++|.. .| +.||..+|+.++.+|++.|++++|.++|+.
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g-i~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP-IDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999964 9999999999999999999999999999986 45 899999999999999999999999999999
Q ss_pred HHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHcc----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 038303 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA----YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD 311 (461)
Q Consensus 236 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 311 (461)
|.+ .++.|+..+|+.+|.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.+++++|.+.|+.||
T Consensus 605 M~e-~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 605 IHE-YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHH-cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 999 8999999999999999999999999999999998 46899999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC---CCCchhhHHHHHHH
Q 038303 312 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM---PIEAEWSVWGALLN 388 (461)
Q Consensus 312 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~ 388 (461)
..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.||.+|++.|++++|.++|++| +..||..+|+.++.
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~-~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKS-IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999998 799999999999999999999999999999999 78899999999999
Q ss_pred HHHhcCChHHHHHHHHHHhh-cCCCChhHHHHHHHHHhc----cC-------------------ChhhHHHHHHHHHHcC
Q 038303 389 ACRIHRNDEMFDRIRQDLVN-KKGVSVGTFALMSNTFAG----AD-------------------RWEDTNKIRDEIRRMG 444 (461)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~----~g-------------------~~~~A~~~~~~m~~~g 444 (461)
+|++.|+.+.|.+++++|.+ +..|+..+|+.++..|.+ ++ ..++|..+|++|.+.|
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G 842 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG 842 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC
Confidence 99999999999999999998 558899999999865432 11 2367999999999999
Q ss_pred CccccCcccccc
Q 038303 445 LKKKTGCSWIEV 456 (461)
Q Consensus 445 ~~~~~~~~~~~~ 456 (461)
+.|+..+...++
T Consensus 843 i~Pd~~T~~~vL 854 (1060)
T PLN03218 843 TLPTMEVLSQVL 854 (1060)
T ss_pred CCCCHHHHHHHH
Confidence 999987766554
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.1e-59 Score=456.37 Aligned_cols=427 Identities=13% Similarity=0.112 Sum_probs=403.0
Q ss_pred CCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCCceeHH
Q 038303 6 SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYG-HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV----VFPDVVSWT 80 (461)
Q Consensus 6 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~ 80 (461)
..++..+++.+|..+.+.|++++|+++|+.|.+.+ +.|+..+|+.++.+|++.++++.|.+++..| ..||..+||
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34466789999999999999999999999999864 7899999999999999999999999999988 469999999
Q ss_pred HHHHHHHcCCChHHHHHHHhcCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChh
Q 038303 81 TIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLA 160 (461)
Q Consensus 81 ~li~~~~~~~~~~~a~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 160 (461)
.++.+|++.|++++|.++|++| ..||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|+.+
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m-~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEM-PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcC-CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 9999999999999999999999 469999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcCCC----CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHH
Q 038303 161 SCGYLFVKMPK----RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236 (461)
Q Consensus 161 ~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~ 236 (461)
.+.+++..+.+ +|..+||+||.+|++.|++++|.++|++| .++|..+|+.++.+|++.|+.++|..+|++|
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m-----~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM-----PEKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC-----CCCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999887764 89999999999999999999999999999 4578999999999999999999999999999
Q ss_pred HhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHcc----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH
Q 038303 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA----YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD 312 (461)
Q Consensus 237 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 312 (461)
.+ .|+.||..+|+.++.+|++.|++++|.+++..|. .+|..+|++++.+|++.|++++|.++|++|. .||.
T Consensus 317 ~~-~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~ 391 (697)
T PLN03081 317 RD-SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNL 391 (697)
T ss_pred HH-cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCe
Confidence 98 8999999999999999999999999999999987 4688999999999999999999999999995 4799
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC----CCCchhhHHHHHHH
Q 038303 313 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM----PIEAEWSVWGALLN 388 (461)
Q Consensus 313 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~ 388 (461)
.+|+.+|.+|++.|+.++|.++|++|.+ .|+.||..||+.++.+|++.|..++|.++|+.| ++.|+..+|+.++.
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~-~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIA-EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 9999999999999999999999999998 799999999999999999999999999999999 67899999999999
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcCCccc
Q 038303 389 ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448 (461)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 448 (461)
+|.+.|+.++|.++++++ ...|+..+|..++.+|...|+++.|..+++++.+ +.|+
T Consensus 471 ~l~r~G~~~eA~~~~~~~--~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~ 526 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA--PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPE 526 (697)
T ss_pred HHHhcCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCC
Confidence 999999999999999876 4567888999999999999999999999999964 4454
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.3e-29 Score=260.28 Aligned_cols=421 Identities=11% Similarity=0.037 Sum_probs=201.8
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCceeHHHHHHHHHcC
Q 038303 13 FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVSWTTIISGLSKC 89 (461)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~ 89 (461)
...++..+.+.|++++|..+++.+.+.. ++++.++..+...+...|++++|.+.|+++. +.+...+..+...+...
T Consensus 434 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 512 (899)
T TIGR02917 434 DLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE 512 (899)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC
Confidence 3344455555555555555555555432 2344455555555555555555555555542 22233444445555555
Q ss_pred CChHHHHHHHhcC-CCCC-CchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHh
Q 038303 90 GFHKEAIDMFCGI-DVKP-NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFV 167 (461)
Q Consensus 90 ~~~~~a~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 167 (461)
|++++|.+.|+++ ...| +..++..+...+.+.|+.++|...++++.+.++. +...+..++..+.+.|++++|..+++
T Consensus 513 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 591 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILN 591 (899)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5555555555555 2222 3344445555555555555555555555444322 33444445555555555555555555
Q ss_pred cCCC---CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCC
Q 038303 168 KMPK---RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV 244 (461)
Q Consensus 168 ~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~ 244 (461)
++.+ .+...|..+..++...|++++|...|+++.+. .+.+...+..+...+...|+++.|...++.+.+ ..+.
T Consensus 592 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~ 667 (899)
T TIGR02917 592 EAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--QPDSALALLLLADAYAVMKNYAKAITSLKRALE--LKPD 667 (899)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC
Confidence 5432 23444555555555555555555555555443 222334444444555555555555555555444 1222
Q ss_pred cchHHHHHHHHHHhcCCHHHHHHHHHHccCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 038303 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISA 321 (461)
Q Consensus 245 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 321 (461)
+...+..++..+...|++++|.++++.+.+. +...+..+...+...|++++|.+.++++.+.+ |+..++..+..+
T Consensus 668 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 745 (899)
T TIGR02917 668 NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRA 745 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHH
Confidence 3344444555555555555555555544421 23344444444555555555555555554432 233444444444
Q ss_pred HHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC--CCCchhhHHHHHHHHHHhcCChHHH
Q 038303 322 CSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMF 399 (461)
Q Consensus 322 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a 399 (461)
+.+.|++++|.+.++.+.+ ..+.+...+..+...|.+.|++++|...|+++ ..+++...++.+...+...|+ .+|
T Consensus 746 ~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A 822 (899)
T TIGR02917 746 LLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRA 822 (899)
T ss_pred HHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHH
Confidence 5555555555555544444 22333444444444555555555555555444 112233344444444444444 444
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcC
Q 038303 400 DRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444 (461)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 444 (461)
+..++++.+..|.++.++..++.++...|++++|.+.++++.+.+
T Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 823 LEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 444444444444444444444444444444444444444444433
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7.7e-29 Score=254.54 Aligned_cols=426 Identities=11% Similarity=-0.005 Sum_probs=259.9
Q ss_pred cchHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCceeHHHHHHHH
Q 038303 10 HYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF---PDVVSWTTIISGL 86 (461)
Q Consensus 10 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~ 86 (461)
...+..+...+.+.|++++|.++|+.+.+..+ .+...+..+...+...|++++|.+.|+.... .+......++..+
T Consensus 363 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 441 (899)
T TIGR02917 363 PAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSY 441 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHH
Confidence 34455555555566666666666666555432 1344444555555555555555555554421 1223334445555
Q ss_pred HcCCChHHHHHHHhcC--CCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHH
Q 038303 87 SKCGFHKEAIDMFCGI--DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGY 164 (461)
Q Consensus 87 ~~~~~~~~a~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 164 (461)
.+.|++++|+++++.+ ..+++..++..+...+...|++++|.+.|+++.+..+. +...+..+...+...|++++|..
T Consensus 442 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 442 LRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHH
Confidence 5666666666666665 33334556666666677777777777777776665433 44555566666666777777777
Q ss_pred HHhcCCC---CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcC
Q 038303 165 LFVKMPK---RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYD 241 (461)
Q Consensus 165 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ 241 (461)
.|+++.+ .+..++..+...+.+.|+.++|..+++++.+. .+.+...+..+...+...|+++.|..+++.+.+ .
T Consensus 521 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~ 596 (899)
T TIGR02917 521 RFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL--NPQEIEPALALAQYYLGKGQLKKALAILNEAAD--A 596 (899)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH--c
Confidence 6666643 34556666666666667777777777666554 334445555666666667777777777766655 3
Q ss_pred CCCcchHHHHHHHHHHhcCCHHHHHHHHHHccC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHH
Q 038303 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY---KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIAL 318 (461)
Q Consensus 242 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 318 (461)
.+.+...+..+...|.+.|++++|...|+.+.+ .+...+..+...+.+.|++++|...++++.+.. +.+..++..+
T Consensus 597 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 675 (899)
T TIGR02917 597 APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGL 675 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 344555666667777777777777777766542 244556666666667777777777777666542 2234566666
Q ss_pred HHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCchhhHHHHHHHHHHhcCChH
Q 038303 319 ISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDE 397 (461)
Q Consensus 319 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~ 397 (461)
...+...|++++|..+++.+.. ..+++...+..+...+.+.|++++|.+.++++ ...|+..++..+...+...|+.+
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQK--QHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--hCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHH
Confidence 6666666777777777666665 23445555666666666777777777777666 44455555556666666667777
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcC
Q 038303 398 MFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444 (461)
Q Consensus 398 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 444 (461)
+|.+.++++.+..|.+..++..++..|.+.|++++|.+.++++.+..
T Consensus 754 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 754 EAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 77777766666666666666667777776777777777776666543
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=1.5e-21 Score=201.50 Aligned_cols=417 Identities=10% Similarity=-0.002 Sum_probs=325.2
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCce---eHHH----------
Q 038303 17 LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--PDVV---SWTT---------- 81 (461)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~---~~~~---------- 81 (461)
...+...|++++|+..|++..+..+ .+...+..+..++.+.|++++|...|++..+ |+.. .|..
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 3456778999999999999998754 2678888899999999999999999998843 3221 1221
Q ss_pred --HHHHHHcCCChHHHHHHHhcC-CCCC-CchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcC
Q 038303 82 --IISGLSKCGFHKEAIDMFCGI-DVKP-NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCG 157 (461)
Q Consensus 82 --li~~~~~~~~~~~a~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 157 (461)
....+.+.|++++|+..|++. ...| +...+..+...+...|++++|.+.|+++++..+. +...+..+...|. .+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hc
Confidence 234677899999999999999 6666 4556777888899999999999999999987554 5566667777774 56
Q ss_pred ChhhHHHHHhcCCCCc------------hhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccch
Q 038303 158 SLASCGYLFVKMPKRN------------VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225 (461)
Q Consensus 158 ~~~~a~~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~ 225 (461)
+.++|..+++.+.... ...+..+...+...|++++|.+.|++..+. .+-+...+..+...+.+.|+
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 7899999998876421 224556677888999999999999999984 33456677788888999999
Q ss_pred hhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCC----h---------hhHHHHHHHHHhcCC
Q 038303 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD----K---------ISWSTVISGLAMNGC 292 (461)
Q Consensus 226 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~---------~~~~~l~~~~~~~~~ 292 (461)
+++|...++.+.+.. +.+...+..+...+...++.++|...++.+.... . ..+..+...+...|+
T Consensus 511 ~~~A~~~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 511 RSQADALMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred HHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 999999999987722 2334444555566778999999999999886421 1 112345667889999
Q ss_pred hHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHH
Q 038303 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIR 372 (461)
Q Consensus 293 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 372 (461)
.++|..+++. .+++...+..+...+.+.|++++|+..|+...+ .-+.+...+..++..|...|++++|++.++
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999882 234556777888889999999999999999988 345567888999999999999999999999
Q ss_pred hC-CCCch-hhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC------hhHHHHHHHHHhccCChhhHHHHHHHHHH-c
Q 038303 373 EM-PIEAE-WSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVS------VGTFALMSNTFAGADRWEDTNKIRDEIRR-M 443 (461)
Q Consensus 373 ~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~ 443 (461)
.. ...|+ ...+..+..++...|++++|.++++++....|.+ ...+..++..+.+.|++++|++.+++... .
T Consensus 662 ~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 662 KLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred HHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 88 44444 4456667777889999999999999999855433 24677789999999999999999999853 4
Q ss_pred CCcc
Q 038303 444 GLKK 447 (461)
Q Consensus 444 g~~~ 447 (461)
|+.|
T Consensus 742 ~~~~ 745 (1157)
T PRK11447 742 GITP 745 (1157)
T ss_pred CCCC
Confidence 5543
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=6.9e-21 Score=196.72 Aligned_cols=422 Identities=10% Similarity=-0.021 Sum_probs=249.7
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHhcCCHHHHHHHHhhCCC---CCceeHHHHHHHHHcCC
Q 038303 15 QALKACSLAHPHQKALEIHAHVIEYGHLHDIF-IQNSLLHFYVTVKDIFSAHQIFNSVVF---PDVVSWTTIISGLSKCG 90 (461)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~ 90 (461)
.+...+...|++++|++.|+.+.+.+. |+.. ............|+.++|.+.|+++.. .+...+..+...+...|
T Consensus 117 ~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 117 QQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccC
Confidence 334467788899999999998887543 2322 111111222345888888888888843 34456777778888888
Q ss_pred ChHHHHHHHhcC-CCC----------------------------------CCchhHH---------------------HH
Q 038303 91 FHKEAIDMFCGI-DVK----------------------------------PNANTLV---------------------SV 114 (461)
Q Consensus 91 ~~~~a~~~~~~m-~~~----------------------------------p~~~~~~---------------------~l 114 (461)
+.++|++.++++ ... |+...+. ..
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~ 275 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQ 275 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 888888888776 111 1100000 11
Q ss_pred HHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCC--Cch---hHHH-----------
Q 038303 115 LSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK--RNV---VSWT----------- 178 (461)
Q Consensus 115 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~---~~~~----------- 178 (461)
...+...|++++|...|++.++..+. +...+..+...+.+.|++++|+..|++..+ |+. ..|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 22345668888888888888877544 677778888888888888888888887764 321 1121
Q ss_pred -HHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHH---
Q 038303 179 -TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVIN--- 254 (461)
Q Consensus 179 -~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~--- 254 (461)
.....+.+.|++++|...|++..+. .+.+...+..+...+...|++++|...|+.+.+.. +.+...+..+..
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 1234567788888888888888875 34455566677778888888888888888887622 222223333333
Q ss_pred ---------------------------------------HHHhcCCHHHHHHHHHHccC--C-ChhhHHHHHHHHHhcCC
Q 038303 255 ---------------------------------------MYVKCGDVGIAIQVFNMLAY--K-DKISWSTVISGLAMNGC 292 (461)
Q Consensus 255 ---------------------------------------~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 292 (461)
.+...|++++|.+.|++..+ | +...+..+...+.+.|+
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 33345566666666655542 2 33445555566666666
Q ss_pred hHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhc------------------------------
Q 038303 293 GRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY------------------------------ 342 (461)
Q Consensus 293 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------------------------------ 342 (461)
+++|...++++.+... .+...+..+...+...++.++|...++.+....
T Consensus 511 ~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 6666666666654321 122233333333455666666666665542200
Q ss_pred --------CCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 038303 343 --------EIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412 (461)
Q Consensus 343 --------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 412 (461)
..+.+...+..+...+.+.|++++|+..|++. ...| +...+..+...+...|+.++|+..++.+.+..|.
T Consensus 590 ~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~ 669 (1157)
T PRK11447 590 AEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND 669 (1157)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 01122233344455555556666666665555 2222 3344555555566666666666666666555555
Q ss_pred ChhHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 038303 413 SVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 443 (461)
++.++..++.++.+.|++++|.++++++...
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 5556666666666666666666666666554
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=1.1e-22 Score=180.11 Aligned_cols=417 Identities=10% Similarity=0.103 Sum_probs=230.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCceeHHHHHHHHHcC
Q 038303 13 FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVSWTTIISGLSKC 89 (461)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~ 89 (461)
...|.+-..+.|++.+|++.....-..+.. +....-.+-..+....+.+....--...+ ..-..+|..+.+.+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 334555566677888777766655443321 11111111122333333333222211111 12234566666666666
Q ss_pred CChHHHHHHHhcC-CCCC-CchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHh
Q 038303 90 GFHKEAIDMFCGI-DVKP-NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFV 167 (461)
Q Consensus 90 ~~~~~a~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 167 (461)
|++++|+..++.+ ..+| ....|..+..++...|+.+.|.+.|.+.++..+. ..-..+.+...+...|++.+|...+.
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~-l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD-LYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc-hhhhhcchhHHHHhhcccchhHHHHH
Confidence 6666666666666 5555 3455666666666666666666666666554322 11222333444445566666666555
Q ss_pred cCCC--Cc-hhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC-hhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCC
Q 038303 168 KMPK--RN-VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN-EATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243 (461)
Q Consensus 168 ~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~ 243 (461)
+..+ |. .+.|+.|...+-.+|+...|+..|++..+ +.|+ ...|..+-..|...+.++.|...+..... ..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~---lr 282 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN---LR 282 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh---cC
Confidence 5443 22 34566666666666666666666666655 3343 34555555666666666666665555533 22
Q ss_pred Cc-chHHHHHHHHHHhcCCHHHHHHHHHHccC--CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HhHHHHH
Q 038303 244 VS-NLVGNAVINMYVKCGDVGIAIQVFNMLAY--KD-KISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD-DVTFIAL 318 (461)
Q Consensus 244 ~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l 318 (461)
|+ ..++..+...|...|.++.|++.+++..+ |+ ...|+.|..++-..|++.+|...|.+.... .|+ ..+.+.|
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NL 360 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNL 360 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHH
Confidence 32 33455555566666666666666666553 22 345666666666666666666666666553 232 2555566
Q ss_pred HHHHHcCCChHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCchhh-HHHHHHHHHHhcCC
Q 038303 319 ISACSHGGLVDQGLILFKAMSTVYEIVPQ-MQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS-VWGALLNACRIHRN 395 (461)
Q Consensus 319 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~ 395 (461)
...|...|.++.|..+|....+ +.|. ....+.|...|-+.|++++|..-+++. .+.|+.. .++.+...|...|+
T Consensus 361 gni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh
Confidence 6666666666666666665554 2232 345556666666666666666666665 5555433 45556666666666
Q ss_pred hHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHH
Q 038303 396 DEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442 (461)
Q Consensus 396 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 442 (461)
.+.|++.+.+++...|.-..+++.|+.+|..+|++.+|++-++...+
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 66666666666666666666666666666666666666666666544
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=1.4e-21 Score=173.30 Aligned_cols=378 Identities=13% Similarity=0.088 Sum_probs=320.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCceeHHHHHHHHHcCCChHHHHHHHhcC-CCCCCchhHHHHH-HHh
Q 038303 44 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVF---PDVVSWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSVL-SAC 118 (461)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~p~~~~~~~ll-~~~ 118 (461)
-..+|+.+.+.+...|++++|+.+++.+++ ..+..|..+..++...|+.+.|.++|.+. .+.|+.....+-+ ..+
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 567899999999999999999999998843 35678999999999999999999999888 8888766554433 334
Q ss_pred cccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCC--Cc-hhHHHHHHHHHHhcCChHHHHH
Q 038303 119 SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK--RN-VVSWTTMIGGYAERGFCKEAVS 195 (461)
Q Consensus 119 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~ 195 (461)
...|++.+|...+.+.++..+. =...|+.|...+-..|+...|+..|++..+ |+ ...|-.|...|-..+.+++|+.
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHH
Confidence 5679999999999998887543 456788899999999999999999999987 33 4678999999999999999999
Q ss_pred HHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCc-chHHHHHHHHHHhcCCHHHHHHHHHHccC
Q 038303 196 VFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS-NLVGNAVINMYVKCGDVGIAIQVFNMLAY 274 (461)
Q Consensus 196 ~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 274 (461)
.|.+.... -+.....+..+...|-..|.++.|+..++...+ +.|+ +..|+.|..++-..|++.+|.+.+++...
T Consensus 274 ~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~---~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 274 CYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE---LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHh---cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999874 344466777888889999999999999999876 3344 45789999999999999999999998873
Q ss_pred --C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCC-cc
Q 038303 275 --K-DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD-VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ-MQ 349 (461)
Q Consensus 275 --~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~ 349 (461)
| ...+.+.|...+...|.+++|..+|....+ +.|.. ..++.|...|-++|++++|+..+++..+ +.|+ ..
T Consensus 349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAd 423 (966)
T KOG4626|consen 349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFAD 423 (966)
T ss_pred hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHH
Confidence 3 467889999999999999999999999988 45655 6788999999999999999999999876 6777 57
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC-CCCchhh-HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhcc
Q 038303 350 HYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS-VWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427 (461)
Q Consensus 350 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (461)
.|+.+...|-..|+.+.|.+.+.+. .+.|... ..+.|...|...|+..+|++.++......|+.+.+|..++.++--.
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~v 503 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIV 503 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHH
Confidence 8899999999999999999999988 6677544 6778888899999999999999999999999999999999887655
Q ss_pred CChhh
Q 038303 428 DRWED 432 (461)
Q Consensus 428 g~~~~ 432 (461)
.+|.+
T Consensus 504 cdw~D 508 (966)
T KOG4626|consen 504 CDWTD 508 (966)
T ss_pred hcccc
Confidence 55443
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=1.2e-21 Score=181.01 Aligned_cols=292 Identities=12% Similarity=0.050 Sum_probs=197.8
Q ss_pred HHHcCChhhHHHHHhcCCC--C-chhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---hhhHHHHHHHhhccchh
Q 038303 153 YIRCGSLASCGYLFVKMPK--R-NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN---EATLVNVLSACSSISAL 226 (461)
Q Consensus 153 ~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~~~l~~~~~~~~~ 226 (461)
+...|++++|...|+++.+ | +..++..+...+...|++++|..+++.+...+ ..++ ...+..+...+...|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP-DLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3445555555555555543 2 23345555555555666666666665555432 1111 12344455555555666
Q ss_pred hhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCC--------hhhHHHHHHHHHhcCChHHHHH
Q 038303 227 SFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD--------KISWSTVISGLAMNGCGRQALQ 298 (461)
Q Consensus 227 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~ 298 (461)
+.|..+|+.+.+ ..+.+..++..++..+.+.|++++|.+.++.+.+.+ ...+..+...+.+.|++++|..
T Consensus 124 ~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 124 DRAEELFLQLVD--EGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHc--CCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 666666665554 122344556666677777777777777776665321 1134556677788899999999
Q ss_pred HHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 038303 299 LFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIE 377 (461)
Q Consensus 299 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 377 (461)
.++++.+.. +.+...+..+...+.+.|++++|.++++++.. .+......++..++.+|.+.|++++|...++++ ...
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEE-QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999888753 22346777788888899999999999998876 222222456788889999999999999999988 556
Q ss_pred chhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhc---cCChhhHHHHHHHHHHcCCccccC
Q 038303 378 AEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAG---ADRWEDTNKIRDEIRRMGLKKKTG 450 (461)
Q Consensus 378 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~ 450 (461)
|+...+..+...+.+.|++++|..+++++.+..|.+. .+..++..+.. .|+.+++..++++|.+++++|+|.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7777777788889999999999999999888776655 56666655553 568999999999999999998886
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=1.2e-19 Score=176.37 Aligned_cols=419 Identities=10% Similarity=-0.051 Sum_probs=289.0
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCceeHHHHHHHHHcC
Q 038303 13 FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF---PDVVSWTTIISGLSKC 89 (461)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~ 89 (461)
+...-..+...|++++|+..|+..++.. |++..|..+..+|.+.|++++|.+.++.... .+...|..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 4455667778899999999999988754 6777888888889999999999999988743 3455778888889999
Q ss_pred CChHHHHHHHhcC-CCCC-CchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHh
Q 038303 90 GFHKEAIDMFCGI-DVKP-NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFV 167 (461)
Q Consensus 90 ~~~~~a~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 167 (461)
|++++|+..|... ...+ +......++..+.. ..+........+.... +...+..+.. +...........-+.
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRPKPRPAGLE 281 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccCCcchhhhh
Confidence 9999998877655 2222 11111111111111 1222222222222221 2222222222 222222222222222
Q ss_pred cCCCCc---hhHHHHHHHH---HHhcCChHHHHHHHHHHHhcCCCCC-ChhhHHHHHHHhhccchhhhHHHHHHHHHhhc
Q 038303 168 KMPKRN---VVSWTTMIGG---YAERGFCKEAVSVFQEMEKTKEAEP-NEATLVNVLSACSSISALSFGKYVHSYISTRY 240 (461)
Q Consensus 168 ~~~~~~---~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~ 240 (461)
...+.+ ...+..+... ....+++++|.+.|++..+.+...| ....+..+...+...|++++|...++...+
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~-- 359 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE-- 359 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 211111 1111111111 1234689999999999987642334 345667777778889999999999999876
Q ss_pred CCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHH
Q 038303 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY---KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIA 317 (461)
Q Consensus 241 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 317 (461)
..+.....+..+...+...|++++|...|+...+ .+...|..+...+...|++++|...|++..+... .+...+..
T Consensus 360 l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~ 438 (615)
T TIGR00990 360 LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQ 438 (615)
T ss_pred cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHH
Confidence 2223355778888889999999999999988764 2567888899999999999999999999988532 24566777
Q ss_pred HHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCchh-h-------HHHHHHH
Q 038303 318 LISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEW-S-------VWGALLN 388 (461)
Q Consensus 318 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~l~~ 388 (461)
+...+.+.|++++|+..|+.... ..+.+...+..+...+...|++++|.+.|++. ...|+. . .++....
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH
Confidence 88888999999999999999887 34556788889999999999999999999987 433321 1 1111122
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcC
Q 038303 389 ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444 (461)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 444 (461)
.+...|++++|..+++++.+..|.+..++..++.++.+.|++++|.+.+++..+..
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 24456999999999999999889888899999999999999999999999986653
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=2.4e-20 Score=172.24 Aligned_cols=289 Identities=13% Similarity=0.079 Sum_probs=198.4
Q ss_pred HHHHcCCChHHHHHHHhcC-CCCCC-chhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCC
Q 038303 84 SGLSKCGFHKEAIDMFCGI-DVKPN-ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN---IILDNAILDFYIRCGS 158 (461)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~ 158 (461)
..+...|++++|+..|+++ ...|+ ..++..+...+...|++++|..+++.+.+.+..++ ...+..+...|.+.|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445667777777777777 55553 33556666666667777777777766665432211 1344555556666666
Q ss_pred hhhHHHHHhcCCC---CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHH
Q 038303 159 LASCGYLFVKMPK---RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSY 235 (461)
Q Consensus 159 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~ 235 (461)
+++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+ ..+...
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~------------------------ 177 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG-GDSLRV------------------------ 177 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc-CCcchH------------------------
Confidence 6666666665543 344455556666666666666666666655432 111000
Q ss_pred HHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH
Q 038303 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY--K-DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD 312 (461)
Q Consensus 236 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 312 (461)
.....+..+...+.+.|++++|...|+++.+ | +...+..+...+.+.|++++|.+.++++.+.+.....
T Consensus 178 --------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 249 (389)
T PRK11788 178 --------EIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS 249 (389)
T ss_pred --------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH
Confidence 0011335566777888888888888888763 2 3556777888899999999999999999875433334
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCchhhHHHHHHHHHH
Q 038303 313 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALLNACR 391 (461)
Q Consensus 313 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~ 391 (461)
.++..+..+|...|++++|...++++.+ ..|+...+..++..+.+.|++++|..+++++ ...|+...++.++..+.
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence 6678888999999999999999999877 2467677788899999999999999999887 66788888888887755
Q ss_pred h---cCChHHHHHHHHHHhh
Q 038303 392 I---HRNDEMFDRIRQDLVN 408 (461)
Q Consensus 392 ~---~~~~~~a~~~~~~~~~ 408 (461)
. .|+.+++..+++++.+
T Consensus 327 ~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 327 AEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hccCCccchhHHHHHHHHHH
Confidence 3 5588899999998886
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=2e-18 Score=170.85 Aligned_cols=401 Identities=9% Similarity=-0.014 Sum_probs=244.5
Q ss_pred CcchHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhC---CCCCceeHHHHHHH
Q 038303 9 NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV---VFPDVVSWTTIISG 85 (461)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~li~~ 85 (461)
+.....-.+......|+.++|++++....... +.+...+..+...+...|++++|..+|++. .+.+...+..+...
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34445556667778888888888888877633 234456777778888888888888888885 33445566777778
Q ss_pred HHcCCChHHHHHHHhcC-CCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHH
Q 038303 86 LSKCGFHKEAIDMFCGI-DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGY 164 (461)
Q Consensus 86 ~~~~~~~~~a~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 164 (461)
+...|++++|+..+++. ...|+...+..+..++...|+.++|...++++.+..+. +...+..+...+...|..++|+.
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGAPDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHH
Confidence 88888888888888887 55554333666677777888888888888888887655 55555667777777788888888
Q ss_pred HHhcCCC-Cch------hHHHHHHHHHH-----hcCCh---HHHHHHHHHHHhcCCCCCChh-hHHHHHHHhhccchhhh
Q 038303 165 LFVKMPK-RNV------VSWTTMIGGYA-----ERGFC---KEAVSVFQEMEKTKEAEPNEA-TLVNVLSACSSISALSF 228 (461)
Q Consensus 165 ~~~~~~~-~~~------~~~~~li~~~~-----~~~~~---~~a~~~~~~m~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 228 (461)
.++.... |+. .....++.... ..+++ ++|++.++.+.+.-...|+.. .+..
T Consensus 172 ~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~------------- 238 (765)
T PRK10049 172 AIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR------------- 238 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH-------------
Confidence 8877665 221 01111111111 11122 445555555543200111111 0000
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCC--hh--hHHHHHHHHHhcCChHHHHHHHHHHH
Q 038303 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD--KI--SWSTVISGLAMNGCGRQALQLFSLMI 304 (461)
Q Consensus 229 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~--~~~~l~~~~~~~~~~~~a~~~~~~m~ 304 (461)
.....+..+...|++++|+..|+.+.+.+ .. .-..+...+...|++++|+..|+++.
T Consensus 239 -------------------a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 239 -------------------ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred -------------------HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 00011223344566666666666665431 11 11223456666677777777777665
Q ss_pred hcCCCC---CHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcC----------CCCC---cchHHHHHHHHhhcCCHHHHH
Q 038303 305 INAVFP---DDVTFIALISACSHGGLVDQGLILFKAMSTVYE----------IVPQ---MQHYACVVDMYGRAGLLEEAE 368 (461)
Q Consensus 305 ~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~ 368 (461)
+..... .......+..++...|++++|...++.+..... -.|+ ...+..+...+...|+.++|+
T Consensus 300 ~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~ 379 (765)
T PRK10049 300 YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAE 379 (765)
T ss_pred hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 432111 123344555566667777777777776655110 0122 123445666777778888888
Q ss_pred HHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 038303 369 AFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 369 ~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 443 (461)
++++++ ...| +...+..+...+...|++++|++.++++.+..|.+...+...+..+.+.|++++|..+++++.+.
T Consensus 380 ~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 380 MRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 888776 2233 34456666666777788888888888888777777777777777788888888888888777654
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=5.3e-19 Score=171.23 Aligned_cols=327 Identities=8% Similarity=-0.042 Sum_probs=187.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHhcC-CCCCC-chhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHc
Q 038303 79 WTTIISGLSKCGFHKEAIDMFCGI-DVKPN-ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRC 156 (461)
Q Consensus 79 ~~~li~~~~~~~~~~~a~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (461)
...++..+.+.|++++|+.+++.. ...|+ ......++.++...|+++.|...++.+.+..+. +...+..+...+...
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~ 123 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHc
Confidence 344455555666666666666555 33332 333444444455566666666666666655433 445555566666666
Q ss_pred CChhhHHHHHhcCCC---CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHH
Q 038303 157 GSLASCGYLFVKMPK---RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233 (461)
Q Consensus 157 g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~ 233 (461)
|++++|...+++..+ .+...+..+...+...|++++|...++.+.... +.+...+.. +..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~-~~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIAT-CLSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHH-HHHHHHcCCHHHHHHHH
Confidence 666666666666543 234455566666666666666666666655431 112222222 22355566666666666
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCC---ChhhHHHHHHHHHhcCChHH----HHHHHHHHHhc
Q 038303 234 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DKISWSTVISGLAMNGCGRQ----ALQLFSLMIIN 306 (461)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~----a~~~~~~m~~~ 306 (461)
+.+.+ ....++......+...+.+.|++++|...++..... +...+..+...+...|++++ |...+++..+.
T Consensus 201 ~~~l~-~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLP-FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHh-cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 66554 221222233344455666677777777777665532 34556666667777777664 67777776664
Q ss_pred CCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCchhhHHH-
Q 038303 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWG- 384 (461)
Q Consensus 307 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~- 384 (461)
.. .+...+..+...+...|++++|...+++... ..+.+...+..+..++.+.|++++|...++++ ...|+...+.
T Consensus 280 ~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~ 356 (656)
T PRK15174 280 NS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR 356 (656)
T ss_pred CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence 22 1345666666677777777777777777665 22333445566667777777777777777766 3445443322
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 038303 385 ALLNACRIHRNDEMFDRIRQDLVNKKGVS 413 (461)
Q Consensus 385 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 413 (461)
.+..++...|+.++|...++++.+..|.+
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 23445667777777777777777655543
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=2.9e-17 Score=163.00 Aligned_cols=187 Identities=11% Similarity=0.004 Sum_probs=136.4
Q ss_pred HHHHHhcCCHHHHHHHHHHccC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-hHHHHHHHHHHcCCChH
Q 038303 253 INMYVKCGDVGIAIQVFNMLAY--KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD-VTFIALISACSHGGLVD 329 (461)
Q Consensus 253 i~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~ 329 (461)
...+...|++++|...|+++.. ++...+..+...+.+.|++++|...+++..+.. |+. ..+..+.......|+++
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHH
Confidence 3444567777777777776553 333445566667777788888888888777653 333 23333333444568888
Q ss_pred HHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCchh-hHHHHHHHHHHhcCChHHHHHHHHHHh
Q 038303 330 QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEW-SVWGALLNACRIHRNDEMFDRIRQDLV 407 (461)
Q Consensus 330 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 407 (461)
+|...+++..+ ..|+...+..+...+.+.|++++|...+++. ...|+. ..++.+..++...|+.++|+..++++.
T Consensus 594 eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 594 LALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88888888866 3466777888888888889999998888887 445543 455666667888889999999999988
Q ss_pred hcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcC
Q 038303 408 NKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444 (461)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 444 (461)
+..|.++..+..++.++...|++++|...+++..+..
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8888888889999999999999999999888887643
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=1.9e-18 Score=167.38 Aligned_cols=350 Identities=9% Similarity=-0.038 Sum_probs=274.6
Q ss_pred HcCCChHHHHHHHhcC-----CCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhh
Q 038303 87 SKCGFHKEAIDMFCGI-----DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLAS 161 (461)
Q Consensus 87 ~~~~~~~~a~~~~~~m-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 161 (461)
.+..+++.-.-.|... .-..+......++..+.+.|+++.|..+++..+...+.+ ......++.+....|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHH
Confidence 3445555544444443 111233345566777889999999999999999987774 4444456677778999999
Q ss_pred HHHHHhcCCC---CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHh
Q 038303 162 CGYLFVKMPK---RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST 238 (461)
Q Consensus 162 a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~ 238 (461)
|...|+++.. .+...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.+.|...++.+..
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999999975 35667888899999999999999999999984 344566778888899999999999999998866
Q ss_pred hcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhH
Q 038303 239 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK----DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVT 314 (461)
Q Consensus 239 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 314 (461)
.... +...+..+ ..+...|++++|...++.+.+. +...+..+...+...|++++|+..+++..+... .+...
T Consensus 173 ~~P~--~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~ 248 (656)
T PRK15174 173 EVPP--RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAAL 248 (656)
T ss_pred hCCC--CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHH
Confidence 2222 22233333 3478899999999999987653 233445566788999999999999999998642 24577
Q ss_pred HHHHHHHHHcCCChHH----HHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCch-hhHHHHHHH
Q 038303 315 FIALISACSHGGLVDQ----GLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE-WSVWGALLN 388 (461)
Q Consensus 315 ~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~ 388 (461)
+..+...+...|++++ |...|++..+ ..+.+...+..+...+.+.|++++|...+++. ...|+ ...+..+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 7788889999999986 8999999987 33456778889999999999999999999998 44454 345666777
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcCC
Q 038303 389 ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445 (461)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 445 (461)
++...|++++|+..++++.+..|.+...+..++.++...|++++|...+++..+...
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 799999999999999999998888877777788899999999999999999877643
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.86 E-value=7.2e-17 Score=160.16 Aligned_cols=427 Identities=10% Similarity=-0.000 Sum_probs=307.6
Q ss_pred CCCcchHHHH-HHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHh-cCCHHHHHHHHhhCCCCCceeHHHHHH
Q 038303 7 SYNHYTFTQA-LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVT-VKDIFSAHQIFNSVVFPDVVSWTTIIS 84 (461)
Q Consensus 7 ~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~li~ 84 (461)
.|+..+.... .+.|...|++++|+.++..+.+.++. +..-...|-.+|.. .++ +++..+++...+.++..+..+..
T Consensus 178 ~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~ 255 (987)
T PRK09782 178 SPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYAT 255 (987)
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHH
Confidence 3445555555 88999999999999999999998754 44445666667776 366 88888877655667888889999
Q ss_pred HHHcCCChHHHHHHHhcC-C---CCCCchhHHHH------------------------------HHHhcccchh------
Q 038303 85 GLSKCGFHKEAIDMFCGI-D---VKPNANTLVSV------------------------------LSACSSLVSH------ 124 (461)
Q Consensus 85 ~~~~~~~~~~a~~~~~~m-~---~~p~~~~~~~l------------------------------l~~~~~~~~~------ 124 (461)
.|.+.|+.++|.++++++ . ..|...++..+ +..+.+.+++
T Consensus 256 ~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (987)
T PRK09782 256 ALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL 335 (987)
T ss_pred HHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 999999999999999888 2 22333222211 1222222333
Q ss_pred ---------------------------------------------------------HHHHHHHHHHHhh-c-CCCChhH
Q 038303 125 ---------------------------------------------------------KLGKAIHAHSLRN-L-NENNIIL 145 (461)
Q Consensus 125 ---------------------------------------------------------~~a~~~~~~~~~~-~-~~~~~~~ 145 (461)
++|.++++..... + -.++...
T Consensus 336 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l 415 (987)
T PRK09782 336 LATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTL 415 (987)
T ss_pred hcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHH
Confidence 3333333333221 0 1112223
Q ss_pred HHHHHHHHHHcCCh---hhHHHH------------HhcC-------------CC---C--chhHHHHHHHHHHhcCChHH
Q 038303 146 DNAILDFYIRCGSL---ASCGYL------------FVKM-------------PK---R--NVVSWTTMIGGYAERGFCKE 192 (461)
Q Consensus 146 ~~~l~~~~~~~g~~---~~a~~~------------~~~~-------------~~---~--~~~~~~~li~~~~~~~~~~~ 192 (461)
.+.++..|.+.+.+ .++..+ ..+. .. + +...|..+..++.. +++++
T Consensus 416 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~e 494 (987)
T PRK09782 416 MARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGV 494 (987)
T ss_pred HHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHH
Confidence 33555566555552 222222 1111 00 2 44566677766666 78888
Q ss_pred HHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHc
Q 038303 193 AVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 272 (461)
Q Consensus 193 a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 272 (461)
|...+.+... ..|+......+...+...|+++.|...++.+.. .+|+...+..+..++.+.|+.++|...++..
T Consensus 495 Ai~a~~~Al~---~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~---~~p~~~a~~~la~all~~Gd~~eA~~~l~qA 568 (987)
T PRK09782 495 ALYAWLQAEQ---RQPDAWQHRAVAYQAYQVEDYATALAAWQKISL---HDMSNEDLLAAANTAQAAGNGAARDRWLQQA 568 (987)
T ss_pred HHHHHHHHHH---hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhc---cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9998888877 556665544555556789999999999998755 2444555667788899999999999999988
Q ss_pred cCCChhhHHH---HHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcc
Q 038303 273 AYKDKISWST---VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQ 349 (461)
Q Consensus 273 ~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 349 (461)
.+.++..... +...+...|++++|...+++..+. .|+...+..+...+.+.|++++|+..+++... .-+.+..
T Consensus 569 L~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~ 644 (987)
T PRK09782 569 EQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSN 644 (987)
T ss_pred HhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHH
Confidence 7654333333 333444569999999999999984 56788899999999999999999999999987 3445577
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhcc
Q 038303 350 HYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427 (461)
Q Consensus 350 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (461)
.+..+...+...|++++|...+++. ...| +...+..+..++...|++++|+..++++.+..|.+..+....+....+.
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~ 724 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQR 724 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH
Confidence 8888888999999999999999988 4445 4557788888899999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHcCCc
Q 038303 428 DRWEDTNKIRDEIRRMGLK 446 (461)
Q Consensus 428 g~~~~A~~~~~~m~~~g~~ 446 (461)
.+++.|.+-+++-...++.
T Consensus 725 ~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 725 FNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHHHHHHHHhhcCcc
Confidence 9999999988887665544
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=5.9e-17 Score=157.55 Aligned_cols=425 Identities=7% Similarity=-0.031 Sum_probs=309.1
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHH---HHHHHcC
Q 038303 13 FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTI---ISGLSKC 89 (461)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---i~~~~~~ 89 (461)
|...| ...+.|+++.|+..|++..+..+.-.+..+ .++..+...|+.++|+..+++...|+...+..+ ...+...
T Consensus 38 y~~ai-i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 38 YDSLI-IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHH-HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 33333 346899999999999999987643223344 888888899999999999999987755544443 3467788
Q ss_pred CChHHHHHHHhcC-CCCCC-chhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHh
Q 038303 90 GFHKEAIDMFCGI-DVKPN-ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFV 167 (461)
Q Consensus 90 ~~~~~a~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 167 (461)
|++++|+++|+++ ...|+ ...+..++..+...++.++|.+.++.+.+..+ +...+..++..+...++..+|+..++
T Consensus 116 gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp--~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDP--TVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc--chHHHHHHHHHHHhcchHHHHHHHHH
Confidence 9999999999999 66664 55666777778899999999999999988743 34445445444545666666999999
Q ss_pred cCCC--C-chhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhH------HHHHHHh-----hccch---hhhHH
Q 038303 168 KMPK--R-NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATL------VNVLSAC-----SSISA---LSFGK 230 (461)
Q Consensus 168 ~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~------~~~l~~~-----~~~~~---~~~a~ 230 (461)
++.+ | +...+..+..++.+.|-...|.++..+-.+. +.+...-. ...+..- ....+ .+.+.
T Consensus 194 kll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~--f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 194 EAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL--VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc--cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 9875 4 5667788888999999999998777664332 22222111 1111110 01122 34444
Q ss_pred HHHHHHHhhcCCCCcc-hHH----HHHHHHHHhcCCHHHHHHHHHHccCC----ChhhHHHHHHHHHhcCChHHHHHHHH
Q 038303 231 YVHSYISTRYDLSVSN-LVG----NAVINMYVKCGDVGIAIQVFNMLAYK----DKISWSTVISGLAMNGCGRQALQLFS 301 (461)
Q Consensus 231 ~~~~~~~~~~~~~~~~-~~~----~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~ 301 (461)
.-++.+....+-.|.. ..| .-.+.++...|++.++++.|+.+..+ ...+-..+..+|...+++++|+.+++
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 5555554433333432 222 23456778899999999999999954 33456678899999999999999999
Q ss_pred HHHhcC-----CCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcC----------CCCCc---chHHHHHHHHhhcCC
Q 038303 302 LMIINA-----VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE----------IVPQM---QHYACVVDMYGRAGL 363 (461)
Q Consensus 302 ~m~~~g-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~~---~~~~~l~~~~~~~g~ 363 (461)
.+.... ..++......|.-++..++++++|..+++.+.+... -.|+. ..+..++..+...|+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd 431 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND 431 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC
Confidence 987643 122334457889999999999999999999987211 01221 234456778889999
Q ss_pred HHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHH
Q 038303 364 LEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIR 441 (461)
Q Consensus 364 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 441 (461)
..+|++.++++ ...| |......+...+...|.+.+|++.++.+....|.+..+....+.++...|+|++|..+.+.+.
T Consensus 432 l~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 432 LPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999999 3334 666777777889999999999999999888999999999999999999999999999987775
Q ss_pred Hc
Q 038303 442 RM 443 (461)
Q Consensus 442 ~~ 443 (461)
+.
T Consensus 512 ~~ 513 (822)
T PRK14574 512 SR 513 (822)
T ss_pred hh
Confidence 54
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=1.6e-16 Score=154.50 Aligned_cols=394 Identities=10% Similarity=-0.066 Sum_probs=259.3
Q ss_pred CCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---ceeHHHH
Q 038303 6 SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPD---VVSWTTI 82 (461)
Q Consensus 6 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l 82 (461)
+.|+...|..+..++...|++++|+..++..++... .+...|..+..+|...|++++|..-|......+ ......+
T Consensus 156 ~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~ 234 (615)
T TIGR00990 156 CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQA 234 (615)
T ss_pred cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 467888899999999999999999999999998753 256688888999999999999998887652211 1111122
Q ss_pred HHHHHcCCChHHHHHHHhcCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCC-hhHHHHHHHH---HHHcCC
Q 038303 83 ISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN-IILDNAILDF---YIRCGS 158 (461)
Q Consensus 83 i~~~~~~~~~~~a~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~---~~~~g~ 158 (461)
+..+........+...++.- .++...+..+. .+...........-+....+. .+. ...+..+... ....++
T Consensus 235 ~~~~l~~~a~~~~~~~l~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~ 309 (615)
T TIGR00990 235 VERLLKKFAESKAKEILETK--PENLPSVTFVG-NYLQSFRPKPRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADES 309 (615)
T ss_pred HHHHHHHHHHHHHHHHHhcC--CCCCCCHHHHH-HHHHHccCCcchhhhhccccc--ccccccchHHHHHHHHHhhhhhh
Confidence 22111111122333333322 11222222221 111111111111111111111 111 0111111111 123467
Q ss_pred hhhHHHHHhcCCC------CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC-hhhHHHHHHHhhccchhhhHHH
Q 038303 159 LASCGYLFVKMPK------RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN-EATLVNVLSACSSISALSFGKY 231 (461)
Q Consensus 159 ~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~~l~~~~~~~~~~~a~~ 231 (461)
+++|...|++..+ .....|+.+...+...|++++|...|++..+ ..|+ ...|..+...+...|++++|..
T Consensus 310 y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE---LDPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 8888888887653 2345677788888888999999999998887 4444 5577777888888899999999
Q ss_pred HHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 038303 232 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY--K-DKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308 (461)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 308 (461)
.++...+. .+.+..++..+...+...|++++|...|++..+ | +...+..+...+.+.|++++|+..+++..+..
T Consensus 387 ~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~- 463 (615)
T TIGR00990 387 DFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF- 463 (615)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 98888772 334466788888889999999999999988764 3 45667778888899999999999999988742
Q ss_pred CCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCc---c---hHHHHHHHHhhcCCHHHHHHHHHhC-CCCchh-
Q 038303 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQM---Q---HYACVVDMYGRAGLLEEAEAFIREM-PIEAEW- 380 (461)
Q Consensus 309 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~---~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~- 380 (461)
+.+...+..+...+...|++++|+..|+.... ..-..+. . .++.....+...|++++|.+++++. ...|+.
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~-l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~ 542 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE-LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD 542 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHh-cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 22457788888889999999999999998876 2111111 1 1222233344568999999999886 444544
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 038303 381 SVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412 (461)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 412 (461)
..+..+...+...|++++|+..|+++.+..+.
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 35777888899999999999999999876554
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=2.2e-15 Score=146.71 Aligned_cols=398 Identities=10% Similarity=0.016 Sum_probs=299.8
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCceeHHHHHHHHHcCCC
Q 038303 15 QALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF---PDVVSWTTIISGLSKCGF 91 (461)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~ 91 (461)
.++..+...|+.++|+..++...... .........+...+...|++++|.++|+++.. .++..+..++..+...++
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q 151 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR 151 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC
Confidence 78888889999999999999988211 11223333335678888999999999999943 345667777888999999
Q ss_pred hHHHHHHHhcC-CCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCC
Q 038303 92 HKEAIDMFCGI-DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP 170 (461)
Q Consensus 92 ~~~a~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 170 (461)
.++|++.++++ ...|+...+..++..+...++..+|.+.++++.+..+. +...+..+..++.+.|-...|.++..+-+
T Consensus 152 ~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p 230 (822)
T PRK14574 152 GGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENP 230 (822)
T ss_pred HHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence 99999999999 77888777755555555566666699999999998655 77888889999999999999999988876
Q ss_pred C---CchhHH--HHHHHHHHh---------cCC---hHHHHHHHHHHHhc-CCCCCChh----hHHHHHHHhhccchhhh
Q 038303 171 K---RNVVSW--TTMIGGYAE---------RGF---CKEAVSVFQEMEKT-KEAEPNEA----TLVNVLSACSSISALSF 228 (461)
Q Consensus 171 ~---~~~~~~--~~li~~~~~---------~~~---~~~a~~~~~~m~~~-~~~~~~~~----~~~~~l~~~~~~~~~~~ 228 (461)
. +....+ ...+.-.++ ..+ .+.|+.-++.+... +..++... ...-.+.++...++...
T Consensus 231 ~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~ 310 (822)
T PRK14574 231 NLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTAD 310 (822)
T ss_pred cccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 4 111101 000111111 112 35566666666552 10233222 23345667889999999
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCC---------hhhHHHHHHHHHhcCChHHHHHH
Q 038303 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD---------KISWSTVISGLAMNGCGRQALQL 299 (461)
Q Consensus 229 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~ 299 (461)
++..++.+.. .+.+....+-..+..+|...++.++|+.+|..+..++ ......|.-++...+++++|..+
T Consensus 311 vi~~y~~l~~-~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~ 389 (822)
T PRK14574 311 LIKEYEAMEA-EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQF 389 (822)
T ss_pred HHHHHHHhhh-cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHH
Confidence 9999999998 6766666688999999999999999999999986432 22356788999999999999999
Q ss_pred HHHHHhcCC-----------CCCH---hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHH
Q 038303 300 FSLMIINAV-----------FPDD---VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365 (461)
Q Consensus 300 ~~~m~~~g~-----------~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 365 (461)
++++.+.-. .|+. ..+..++..+...|++.+|++.++++.. .-|-|......+...+...|.+.
T Consensus 390 l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~ 467 (822)
T PRK14574 390 AVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPR 467 (822)
T ss_pred HHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHH
Confidence 999987322 1222 2344556678889999999999999977 56778889999999999999999
Q ss_pred HHHHHHHhC-CCCchh-hHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHH
Q 038303 366 EAEAFIREM-PIEAEW-SVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTF 417 (461)
Q Consensus 366 ~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 417 (461)
+|++.++.. ...|+. .+......++...+++.+|..+.+.+.+..|.+..+-
T Consensus 468 ~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 468 KAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 999999877 455654 3555666778889999999999999999999887443
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=8.5e-17 Score=159.32 Aligned_cols=364 Identities=7% Similarity=-0.015 Sum_probs=243.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCceeHHHHHHHHHcCCChHHHHHHHhcC-CCCCC-chhHHHHHHHh
Q 038303 44 DIFIQNSLLHFYVTVKDIFSAHQIFNSVVF---PDVVSWTTIISGLSKCGFHKEAIDMFCGI-DVKPN-ANTLVSVLSAC 118 (461)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~p~-~~~~~~ll~~~ 118 (461)
++....-.+.+....|+.++|++++.+..+ .+...+..+...+...|++++|.++|++. ...|+ ......+...+
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l 93 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTL 93 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 445555666777778888888888877643 23334777777788888888888888876 55554 44455666667
Q ss_pred cccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCC--C-chhHHHHHHHHHHhcCChHHHHH
Q 038303 119 SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK--R-NVVSWTTMIGGYAERGFCKEAVS 195 (461)
Q Consensus 119 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~ 195 (461)
...|+.++|...++++++..+. +.. +..+..++...|+.++|+..++++.+ | +...+..+...+...+..++|+.
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 7777888888887777776433 444 66677777777777777777777664 3 34445556666667777777777
Q ss_pred HHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHH-----HhcCCH---HHHHH
Q 038303 196 VFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMY-----VKCGDV---GIAIQ 267 (461)
Q Consensus 196 ~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~-----~~~g~~---~~a~~ 267 (461)
.++.... .|+.... + .. .....++... ...+++ ++|++
T Consensus 172 ~l~~~~~----~p~~~~~---l-------~~--------------------~~~~~~~r~~~~~~~~~~~r~~~ad~Al~ 217 (765)
T PRK10049 172 AIDDANL----TPAEKRD---L-------EA--------------------DAAAELVRLSFMPTRSEKERYAIADRALA 217 (765)
T ss_pred HHHhCCC----CHHHHHH---H-------HH--------------------HHHHHHHHhhcccccChhHHHHHHHHHHH
Confidence 6665443 1220000 0 00 0001111111 112223 56676
Q ss_pred HHHHccC---CChh---hH----HHHHHHHHhcCChHHHHHHHHHHHhcCCC-CCHhHHHHHHHHHHcCCChHHHHHHHH
Q 038303 268 VFNMLAY---KDKI---SW----STVISGLAMNGCGRQALQLFSLMIINAVF-PDDVTFIALISACSHGGLVDQGLILFK 336 (461)
Q Consensus 268 ~~~~~~~---~~~~---~~----~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~ 336 (461)
.++.+.+ .++. .+ ...+..+...|++++|+..|+++.+.+.. |+. ....+...|...|++++|+..|+
T Consensus 218 ~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~ 296 (765)
T PRK10049 218 QYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILT 296 (765)
T ss_pred HHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHH
Confidence 6666652 1211 11 11134556779999999999999987532 333 22235678999999999999999
Q ss_pred HhHhhcCCCC--CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-------------h---hhHHHHHHHHHHhcCChH
Q 038303 337 AMSTVYEIVP--QMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-------------E---WSVWGALLNACRIHRNDE 397 (461)
Q Consensus 337 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------------~---~~~~~~l~~~~~~~~~~~ 397 (461)
.+.......+ .......+..++...|++++|..+++++ ...| + ...+..+...+...|+.+
T Consensus 297 ~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~ 376 (765)
T PRK10049 297 ELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP 376 (765)
T ss_pred HHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence 9876221111 1244566777889999999999999988 3223 2 123345556688999999
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcC
Q 038303 398 MFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444 (461)
Q Consensus 398 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 444 (461)
+|+..++++....|.+...+..++..+...|++++|++.+++..+..
T Consensus 377 eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 377 QAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999987754
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=6.8e-14 Score=119.70 Aligned_cols=174 Identities=14% Similarity=0.125 Sum_probs=93.5
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcC--CHHHH-HH----------------------
Q 038303 12 TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK--DIFSA-HQ---------------------- 66 (461)
Q Consensus 12 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a-~~---------------------- 66 (461)
+=|.|++ +..+|.++++.-+++.|...|++.+...-..|+..-+-.+ +..-| .+
T Consensus 118 ~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 4455554 4577899999999999999998888877777766544322 21111 11
Q ss_pred -HHhhCCCCCceeHHHHHHHHHcCCChHHHHHHHhcC---CCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCC
Q 038303 67 -IFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN 142 (461)
Q Consensus 67 -~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 142 (461)
++-+..+....+|.++|.++|+-...+.|.+++++. ..+.+..+||.+|.+-+-. ...+++.+|......||
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPN 272 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCc
Confidence 122222334445555555555555555555555555 4445555555555542211 12455555555555555
Q ss_pred hhHHHHHHHHHHHcCChhhHH----HHHhcCCC----CchhHHHHHHHHHHhcCCh
Q 038303 143 IILDNAILDFYIRCGSLASCG----YLFVKMPK----RNVVSWTTMIGGYAERGFC 190 (461)
Q Consensus 143 ~~~~~~l~~~~~~~g~~~~a~----~~~~~~~~----~~~~~~~~li~~~~~~~~~ 190 (461)
..|+|+++++..+.|+++.|. +++.+|++ |...+|..+|..+++.++.
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp 328 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDP 328 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCc
Confidence 555555555555555544332 22233322 4445555555555544444
No 26
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=3e-16 Score=134.88 Aligned_cols=413 Identities=12% Similarity=0.078 Sum_probs=289.8
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHH-HHHHHHHhcCCHHHHHHHHhhCC--CCCc------eeHHHH
Q 038303 12 TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQN-SLLHFYVTVKDIFSAHQIFNSVV--FPDV------VSWTTI 82 (461)
Q Consensus 12 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~--~~~~------~~~~~l 82 (461)
.+..|...|.......+|+..++-+.+...-|+..... .+-..+.+.+.+.+|++.|+-.. .|++ ...+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 34455566667778889999999998887777765432 23456778889999999887552 1222 234555
Q ss_pred HHHHHcCCChHHHHHHHhcC-CCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCC------------hhHHHH-
Q 038303 83 ISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN------------IILDNA- 148 (461)
Q Consensus 83 i~~~~~~~~~~~a~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------------~~~~~~- 148 (461)
.-.+.+.|.++.|+.-|+.. ...|+..+-..|+-++...|+-++..+.|..|+..-..|| ....+.
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence 56788999999999999887 8889887766677677778999999999999986533322 222222
Q ss_pred ----HHHHHHHcCC--hhhHHHHHhcCC----CCchh-------------HHHH--------HHHHHHhcCChHHHHHHH
Q 038303 149 ----ILDFYIRCGS--LASCGYLFVKMP----KRNVV-------------SWTT--------MIGGYAERGFCKEAVSVF 197 (461)
Q Consensus 149 ----l~~~~~~~g~--~~~a~~~~~~~~----~~~~~-------------~~~~--------li~~~~~~~~~~~a~~~~ 197 (461)
.++-.-+... .++++..--++. .|+.. .+.. -...+.++|+++.|++++
T Consensus 363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 1222222221 222222222222 22211 0111 123578999999999999
Q ss_pred HHHHhcCCCCCChh--------------------hHHHHH---------------HHhhccchhhhHHHHHHHHHhhcCC
Q 038303 198 QEMEKTKEAEPNEA--------------------TLVNVL---------------SACSSISALSFGKYVHSYISTRYDL 242 (461)
Q Consensus 198 ~~m~~~~~~~~~~~--------------------~~~~~l---------------~~~~~~~~~~~a~~~~~~~~~~~~~ 242 (461)
+-..+..+-..+.. .|.... +.....|++++|...+++... ..-
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~-nda 521 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN-NDA 521 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc-Cch
Confidence 88765431111111 111110 001125788888888888776 333
Q ss_pred CCcchHHHHHHHHHHhcCCHHHHHHHHHHcc---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHH
Q 038303 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLA---YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALI 319 (461)
Q Consensus 243 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 319 (461)
......|| +...+-..|++++|++.|-++. ..+....-.+...|-...+..+|++++.+.... ++.|+.....|.
T Consensus 522 sc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~ 599 (840)
T KOG2003|consen 522 SCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLA 599 (840)
T ss_pred HHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHH
Confidence 33333333 3445667888999998886654 457777777888888888999999988777654 445668888899
Q ss_pred HHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCchhhHHHHHHHH-HHhcCChH
Q 038303 320 SACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALLNA-CRIHRNDE 397 (461)
Q Consensus 320 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~-~~~~~~~~ 397 (461)
..|-+.|+-..|.+.+-+--+ -++.+..+..-|..-|....-+++|..+|++. -+.|+..-|..++.. +.+.|++.
T Consensus 600 dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred HHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHH
Confidence 999999999999998765544 57788999999999999999999999999998 778999999999888 56889999
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhccCC
Q 038303 398 MFDRIRQDLVNKKGVSVGTFALMSNTFAGADR 429 (461)
Q Consensus 398 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (461)
.|..+++...+..|.+..+...|++.+...|.
T Consensus 678 ka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 678 KAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999999999999999999999988774
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.77 E-value=6.9e-15 Score=137.84 Aligned_cols=431 Identities=10% Similarity=0.012 Sum_probs=282.5
Q ss_pred CCcchHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCc--eeHHH
Q 038303 8 YNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLH--DIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--PDV--VSWTT 81 (461)
Q Consensus 8 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~--~~~~~ 81 (461)
-|+...+.|.+.+...|+++.++.+...+......- -..+|-.+.++|-..|++++|...|.+..+ +|- ..+--
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 356667777777778888888888877777643211 123455566777777888888887766532 322 23444
Q ss_pred HHHHHHcCCChHHHHHHHhcC-CCCCC-chhHHHHHHHhcccc----hhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 038303 82 IISGLSKCGFHKEAIDMFCGI-DVKPN-ANTLVSVLSACSSLV----SHKLGKAIHAHSLRNLNENNIILDNAILDFYIR 155 (461)
Q Consensus 82 li~~~~~~~~~~~a~~~~~~m-~~~p~-~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 155 (461)
+...+.+.|+.+.+..+|+.. ...|| ..|...+...|+..+ ..+.|..++....+.-+. |...|-.+...+..
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV-DSEAWLELAQLLEQ 426 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHh
Confidence 667778888888888888777 44454 445555555555443 445566666655555432 66666666665544
Q ss_pred cCChhhHHHHHhcC--------CCCchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCCChh------hHHHHHHH
Q 038303 156 CGSLASCGYLFVKM--------PKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE--AEPNEA------TLVNVLSA 219 (461)
Q Consensus 156 ~g~~~~a~~~~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~------~~~~~l~~ 219 (461)
..-+ .++.+|... ....+...|.+...+...|++.+|...|.+....-. ..+|.. +--.+...
T Consensus 427 ~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 TDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred cChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 4332 223333332 225566778888888888888888888887765400 122221 12223344
Q ss_pred hhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccC---CChhhHHHHHHHHHhcCChHHH
Q 038303 220 CSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY---KDKISWSTVISGLAMNGCGRQA 296 (461)
Q Consensus 220 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 296 (461)
.-..++.+.|..+|..+.+.+ +.-...|--+.......+...+|..+++.+.. .++..++.+...+.+...+..|
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence 455677888888888887721 11112222222222233567778888877663 3666777777777777788888
Q ss_pred HHHHHHHHhcC-CCCCHhHHHHHHHHHHc------------CCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCC
Q 038303 297 LQLFSLMIINA-VFPDDVTFIALISACSH------------GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363 (461)
Q Consensus 297 ~~~~~~m~~~g-~~p~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 363 (461)
.+-|....+.- ..+|..+...|...|.. .+..++|+++|....+ ..+.|...-+-+.-.++..|+
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGR 661 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccC
Confidence 77666655432 22455555555554432 2456788888888877 456677788888888999999
Q ss_pred HHHHHHHHHhC--CCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCCChhHHHHHHHHHhccCChhhHHHHHHH
Q 038303 364 LEEAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNK--KGVSVGTFALMSNTFAGADRWEDTNKIRDE 439 (461)
Q Consensus 364 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 439 (461)
+.+|..+|.+. .......+|..+.++|...|++..|++.|+...+. ...++.+...|++++.+.|++.+|.+.+..
T Consensus 662 ~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 662 FSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred chHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999988 22234567888999999999999999999998874 366788999999999999999999998877
Q ss_pred HHHcC
Q 038303 440 IRRMG 444 (461)
Q Consensus 440 m~~~g 444 (461)
.....
T Consensus 742 a~~~~ 746 (1018)
T KOG2002|consen 742 ARHLA 746 (1018)
T ss_pred HHHhC
Confidence 76643
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.75 E-value=4.5e-14 Score=132.48 Aligned_cols=364 Identities=12% Similarity=0.062 Sum_probs=221.0
Q ss_pred CCceeHHHHHHHHHcCCChHHHHHHHhcC----CCC-CCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHH
Q 038303 74 PDVVSWTTIISGLSKCGFHKEAIDMFCGI----DVK-PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148 (461)
Q Consensus 74 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 148 (461)
.|++..+.|-+-|.-.|++..+..+...+ ... .-...|-.+.+++-..|++++|..+|.+..+....--...+--
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 45566666666667777777777766665 111 1234466677777777777777777776666543322334445
Q ss_pred HHHHHHHcCChhhHHHHHhcCCC--C-chhHHHHHHHHHHhcC----ChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhh
Q 038303 149 ILDFYIRCGSLASCGYLFVKMPK--R-NVVSWTTMIGGYAERG----FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221 (461)
Q Consensus 149 l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~ 221 (461)
+...+.+.|+++.+...|+.+.+ | +..+...|...|+..+ ..+.|..++.+..+. .+.|...|..+...+.
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLLE 425 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHH
Confidence 66777777777777777777654 2 3445555555555553 456666666666554 4555566655555554
Q ss_pred ccchhhhHHHHHHHH----HhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCC-------Ch------hhHHHHH
Q 038303 222 SISALSFGKYVHSYI----STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-------DK------ISWSTVI 284 (461)
Q Consensus 222 ~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~------~~~~~l~ 284 (461)
....+.. ...+..+ .. .+-.+.+.+.|.+...+...|++.+|...|...... +. .+--.+.
T Consensus 426 ~~d~~~s-L~~~~~A~d~L~~-~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 426 QTDPWAS-LDAYGNALDILES-KGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred hcChHHH-HHHHHHHHHHHHH-cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 4433322 4333332 23 445566777788888888888888888888766522 22 1122234
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCH-hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCC
Q 038303 285 SGLAMNGCGRQALQLFSLMIINAVFPDD-VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363 (461)
Q Consensus 285 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 363 (461)
..+-..++++.|.+.|....+. .|+- ..|--+.......++..+|...++.... ....++..++.+...+.+...
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhh
Confidence 4455566778888888887764 2433 3333333223335677777777777766 444555555656667777777
Q ss_pred HHHHHHHHHhC----CCCchhhHHHHHHHHHH------------hcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhcc
Q 038303 364 LEEAEAFIREM----PIEAEWSVWGALLNACR------------IHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427 (461)
Q Consensus 364 ~~~A~~~~~~~----~~~p~~~~~~~l~~~~~------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (461)
+..|.+-|..+ ...+|..+...|.+.|. ..+..+.|++.|.++++..|.|..+=+.++-+++..
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEK 659 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhc
Confidence 77776644444 22345554444444332 234466777777777777777777777777777777
Q ss_pred CChhhHHHHHHHHHHcCC
Q 038303 428 DRWEDTNKIRDEIRRMGL 445 (461)
Q Consensus 428 g~~~~A~~~~~~m~~~g~ 445 (461)
|++.+|..+|.++.+...
T Consensus 660 g~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREATS 677 (1018)
T ss_pred cCchHHHHHHHHHHHHHh
Confidence 777777777777776654
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.69 E-value=7e-12 Score=113.14 Aligned_cols=427 Identities=10% Similarity=0.025 Sum_probs=233.2
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhC--------CCCCceeHHHHHHHHH
Q 038303 16 ALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV--------VFPDVVSWTTIISGLS 87 (461)
Q Consensus 16 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~--------~~~~~~~~~~li~~~~ 87 (461)
|..++++..-++.|..+++..++. ++.+...|.+-...=-..|+.+...+++++. ...+...|-.=...+-
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 455777888888888888888774 4557777777666666778888887777654 1112222222222233
Q ss_pred cCCChHHHHHHHhcC---CCCC--CchhHHHHHHHhcccchhHHHH----------------------------------
Q 038303 88 KCGFHKEAIDMFCGI---DVKP--NANTLVSVLSACSSLVSHKLGK---------------------------------- 128 (461)
Q Consensus 88 ~~~~~~~a~~~~~~m---~~~p--~~~~~~~ll~~~~~~~~~~~a~---------------------------------- 128 (461)
..|.+-.+..+.... |+.- -..||..-...|.+.+.++-|.
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHH
Confidence 333333333333222 1111 1233444444444444444444
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCC---CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 038303 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK---RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205 (461)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 205 (461)
.++++++..-++ ....|-...+-+-..|++..|..++...-+ .+...|-.-+.....+.+++.|..+|.+...
T Consensus 571 Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--- 646 (913)
T KOG0495|consen 571 ALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--- 646 (913)
T ss_pred HHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc---
Confidence 444444444322 333444444444444555555544444432 2233444444444445555555555555444
Q ss_pred CCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccC--C-ChhhHHH
Q 038303 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY--K-DKISWST 282 (461)
Q Consensus 206 ~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ 282 (461)
..|+...|..-+..-.-.+..++|.+++++..+ .++.-...|-.+.+.+-+.++++.|.+.|..-.+ | .+..|-.
T Consensus 647 ~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWll 724 (913)
T KOG0495|consen 647 ISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL 724 (913)
T ss_pred cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHH
Confidence 334444444444444444455555555544444 2222233444444445555555555555544332 2 2333444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcC
Q 038303 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362 (461)
Q Consensus 283 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 362 (461)
+...--+.|.+-+|..++++..-.+.. +...|-..|+.=.+.|+.+.|..+..+..+ .++.+...|..-|....+.+
T Consensus 725 LakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcc
Confidence 444444455555555555555544332 444555555555555555555555555544 34445555555555555555
Q ss_pred CHHHHHHHHHhCCCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHH
Q 038303 363 LLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442 (461)
Q Consensus 363 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 442 (461)
+-......+++. ..|++....+...+....+++.|.+-|.+.....|.+..+|..+.+.+.+.|.-++-.+++.+...
T Consensus 802 rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 802 RKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred cchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 544444444444 345555666677788899999999999999999999999999999999999999999999988866
Q ss_pred cCCccccCcccccc
Q 038303 443 MGLKKKTGCSWIEV 456 (461)
Q Consensus 443 ~g~~~~~~~~~~~~ 456 (461)
. .|.-|..|.-|
T Consensus 880 ~--EP~hG~~W~av 891 (913)
T KOG0495|consen 880 A--EPTHGELWQAV 891 (913)
T ss_pred c--CCCCCcHHHHH
Confidence 4 45555555543
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=5.2e-13 Score=114.39 Aligned_cols=345 Identities=7% Similarity=0.010 Sum_probs=184.8
Q ss_pred CcchHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCCceeHHHHHH
Q 038303 9 NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV----VFPDVVSWTTIIS 84 (461)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~li~ 84 (461)
+..+|..+|.++|+-...+.|..++++-.+...+.+..++|.+|.+-.-..+ .+++.+| ..||..++|+++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHH
Confidence 4556667777776666666677776666666556666666666655433222 3444444 4566777777777
Q ss_pred HHHcCCChHHHH----HHHhcC---CCCCCchhHHHHHHHhcccchhHH-HHHHHHHHHh----hcCCC----ChhHHHH
Q 038303 85 GLSKCGFHKEAI----DMFCGI---DVKPNANTLVSVLSACSSLVSHKL-GKAIHAHSLR----NLNEN----NIILDNA 148 (461)
Q Consensus 85 ~~~~~~~~~~a~----~~~~~m---~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~~~~~~~ 148 (461)
+..+.|+++.|. +++-+| |+.|...+|..+|..+.+.++..+ +..+..+... ..++| +...+.+
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 666666655433 333444 667776677666666666655433 2222222221 12222 3334455
Q ss_pred HHHHHHHcCChhhHHHHHhcCCC--------Cc---hhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 038303 149 ILDFYIRCGSLASCGYLFVKMPK--------RN---VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVL 217 (461)
Q Consensus 149 l~~~~~~~g~~~~a~~~~~~~~~--------~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l 217 (461)
.+..|.+..+.+-|.++-.-... ++ ..-|..+....+.....+.-...|+.|.-.- .-|+..+...++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~-y~p~~~~m~~~l 440 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA-YFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce-ecCCchhHHHHH
Confidence 55566666666666555443332 11 1234445555566666666666666666554 566666666666
Q ss_pred HHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCChhh---HHHHHHHHHhcCChH
Q 038303 218 SACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS---WSTVISGLAMNGCGR 294 (461)
Q Consensus 218 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~ 294 (461)
.+....+.++...+++..+.. .|..-+.....-++..+++..- .|+... +.....- +...-.+
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~-~ght~r~~l~eeil~~L~~~k~------------hp~tp~r~Ql~~~~ak-~aad~~e 506 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKE-YGHTFRSDLREEILMLLARDKL------------HPLTPEREQLQVAFAK-CAADIKE 506 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHhcCCC------------CCCChHHHHHHHHHHH-HHHHHHH
Confidence 666666666666666666655 4433332222222222222110 111110 1111111 1111122
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHH---HHHHHHhhcCCHHHHHHHH
Q 038303 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA---CVVDMYGRAGLLEEAEAFI 371 (461)
Q Consensus 295 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~ 371 (461)
.....-.+|.+..+. ....+.+.-.+.+.|+.++|.++|..+.+...-.|-....+ -+++.-.+.+....|...+
T Consensus 507 ~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~l 584 (625)
T KOG4422|consen 507 AYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVL 584 (625)
T ss_pred HHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Confidence 222333445544443 34555666667888888888888888855333334444444 4555566777888888888
Q ss_pred HhC
Q 038303 372 REM 374 (461)
Q Consensus 372 ~~~ 374 (461)
+-|
T Consensus 585 Q~a 587 (625)
T KOG4422|consen 585 QLA 587 (625)
T ss_pred HHH
Confidence 877
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.68 E-value=6.4e-12 Score=113.39 Aligned_cols=410 Identities=10% Similarity=0.024 Sum_probs=304.3
Q ss_pred hhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhC---CCCCceeHHHHHHHHHcCCChHHHHHH
Q 038303 22 LAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV---VFPDVVSWTTIISGLSKCGFHKEAIDM 98 (461)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~ 98 (461)
...+.+.|..++....+.- +.+.. |.-+|++..-++.|..++++. ++.+...|-+-...=-.+|+.+...++
T Consensus 388 elE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred hccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 3444555666666666632 11222 334566677777888887766 566777787766666678888887777
Q ss_pred HhcC-------CCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCC--ChhHHHHHHHHHHHcCChhhHHHHHhcC
Q 038303 99 FCGI-------DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNEN--NIILDNAILDFYIRCGSLASCGYLFVKM 169 (461)
Q Consensus 99 ~~~m-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 169 (461)
+.+- |+..+...|..=..+|-..|..-.+..+....+..|++- -..+|+.-...|.+.+.++-|..+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 7654 888888888888888888888888888888888887653 2467788888888888888888888887
Q ss_pred CC---CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcc
Q 038303 170 PK---RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246 (461)
Q Consensus 170 ~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 246 (461)
.+ .+...|......--..|..++...+|++.... ++-....+.......-..|++..|..++..+.+. .+-+.
T Consensus 543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~--~pnse 618 (913)
T KOG0495|consen 543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--NPNSE 618 (913)
T ss_pred HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--CCCcH
Confidence 76 45667777777767778888888899988885 5555555555566677778999999988888772 22256
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHcc--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-hHHHHHHHHHH
Q 038303 247 LVGNAVINMYVKCGDVGIAIQVFNMLA--YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD-VTFIALISACS 323 (461)
Q Consensus 247 ~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~ 323 (461)
.++-.-+........++.|..+|.+.. .++...|.--+...--.++.++|.+++++..+. -|+. ..|..+.+.+.
T Consensus 619 eiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 619 EIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHH
Confidence 677788888888888999999997766 456677777777777778889999999888774 4555 56667777788
Q ss_pred cCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC--CCCchhhHHHHHHHHHHhcCChHHHHH
Q 038303 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMFDR 401 (461)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~ 401 (461)
+.++++.|...|..-.+ .++-.+-.|-.|.+.=-+.|.+-.|..++++. +.+.+...|-..|+.-.+.|+.+.|..
T Consensus 697 ~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHH
Confidence 88888888888866554 45555667777777777888888899998887 444567788888888888888888888
Q ss_pred HHHHHhhcCCC------------------------------ChhHHHHHHHHHhccCChhhHHHHHHHHHHcC
Q 038303 402 IRQDLVNKKGV------------------------------SVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444 (461)
Q Consensus 402 ~~~~~~~~~~~------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 444 (461)
+..++.+..|. |+.+...++..|....+++.|.+.|.+....+
T Consensus 775 lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 775 LMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred HHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 88877765443 55666777777777888888888888876644
No 32
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=2.7e-12 Score=111.85 Aligned_cols=403 Identities=10% Similarity=0.012 Sum_probs=256.3
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHhCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCce---eHHHHHHHHHcCCC
Q 038303 16 ALKACSLAHPHQKALEIHAHVIEYGHLHD-IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVV---SWTTIISGLSKCGF 91 (461)
Q Consensus 16 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~ 91 (461)
.-+-|.+.|.+++|++.+.+.++.. |+ +..|.....+|...|+|+++.+---+..+-++. .+..-.+++-..|+
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~ 198 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGK 198 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcc
Confidence 3455778899999999999998854 56 778888888899999999988877766544443 33334456666777
Q ss_pred hHHHHHHHhcCCCCCCchhHHHHHHHhcccchhHHHHHHHHH--------HHhhcCCCChhHHHHHHHHHHHcCChhhHH
Q 038303 92 HKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAH--------SLRNLNENNIILDNAILDFYIRCGSLASCG 163 (461)
Q Consensus 92 ~~~a~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 163 (461)
+++|+.-. |...++..+....-...+.+++.. -.+.+-+|.... .+.+..|...=..+--.
T Consensus 199 ~~eal~D~----------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS-~~fi~syf~sF~~~~~~ 267 (606)
T KOG0547|consen 199 FDEALFDV----------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPS-ATFIASYFGSFHADPKP 267 (606)
T ss_pred HHHHHHhh----------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCc-HHHHHHHHhhccccccc
Confidence 77776433 333333333332222223333222 122111222222 12222222110000000
Q ss_pred HHHhcCCCCchhHHHHHHHHHH--hcC---ChHHHHHHHHHHHhcCCCCCChh----hHHHHHHH-------hhccchhh
Q 038303 164 YLFVKMPKRNVVSWTTMIGGYA--ERG---FCKEAVSVFQEMEKTKEAEPNEA----TLVNVLSA-------CSSISALS 227 (461)
Q Consensus 164 ~~~~~~~~~~~~~~~~li~~~~--~~~---~~~~a~~~~~~m~~~~~~~~~~~----~~~~~l~~-------~~~~~~~~ 227 (461)
. +..+....+..+..++- ..+ .+..|...+.+-.......++.. -...+..+ +.-.|+.-
T Consensus 268 ~----~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~ 343 (606)
T KOG0547|consen 268 L----FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSL 343 (606)
T ss_pred c----ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCch
Confidence 0 00011111222221111 111 24444444443322111112111 00112222 34457788
Q ss_pred hHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccC---CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038303 228 FGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY---KDKISWSTVISGLAMNGCGRQALQLFSLMI 304 (461)
Q Consensus 228 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 304 (461)
.+..-|+...+ .. +.+...|--+..+|....+.++.+..|+.... .|+.+|..-.+...-.+++++|..=|++.+
T Consensus 344 ~a~~d~~~~I~-l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai 421 (606)
T KOG0547|consen 344 GAQEDFDAAIK-LD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAI 421 (606)
T ss_pred hhhhhHHHHHh-cC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888877 22 22223366777789999999999999988773 367888888888888899999999999998
Q ss_pred hcCCCCC-HhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCch---
Q 038303 305 INAVFPD-DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE--- 379 (461)
Q Consensus 305 ~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--- 379 (461)
.. .|. ...|..+.-+..+.+++++++..|++..+ .++-.+..|+...+.+...++++.|.+.|+.. ...|+
T Consensus 422 ~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~ 497 (606)
T KOG0547|consen 422 SL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL 497 (606)
T ss_pred hc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc
Confidence 74 343 35666666666788999999999999988 67788899999999999999999999999987 44443
Q ss_pred ------hhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHH
Q 038303 380 ------WSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442 (461)
Q Consensus 380 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 442 (461)
+.+.-.++-.-. .+++..|..+++++++.+|....+|..|+..-.+.|+.++|+++|++-..
T Consensus 498 ~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 498 IIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 222222232222 39999999999999999999999999999999999999999999998643
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.66 E-value=2.9e-13 Score=126.28 Aligned_cols=316 Identities=11% Similarity=0.028 Sum_probs=214.4
Q ss_pred ccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCC---CCchhHHHHHHHHHHhcCChHHHHHH
Q 038303 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP---KRNVVSWTTMIGGYAERGFCKEAVSV 196 (461)
Q Consensus 120 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~ 196 (461)
..|++++|.+++.+.++..+. +...|.+|...|-..|+.+++...+-... ..|...|-.+..-..+.|++++|.-+
T Consensus 151 arg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 347777777777777666544 55666667777777777766665554332 24556666666666667777777777
Q ss_pred HHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcch----HHHHHHHHHHhcCCHHHHHHHHHHc
Q 038303 197 FQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNL----VGNAVINMYVKCGDVGIAIQVFNML 272 (461)
Q Consensus 197 ~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~~ 272 (461)
|.+.++. .+++...+---...|-+.|+...|..-|.++....+ +.|.. .....++.+...++.+.|.+.++..
T Consensus 230 y~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 230 YSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7777664 344444444445556666777777666666655211 11111 1233455566666667777777665
Q ss_pred cC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC---------------------------CCCCHhHHHHHHH
Q 038303 273 AY-----KDKISWSTVISGLAMNGCGRQALQLFSLMIINA---------------------------VFPDDVTFIALIS 320 (461)
Q Consensus 273 ~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g---------------------------~~p~~~~~~~ll~ 320 (461)
.. -+...++.++..+.+...++.|......+.... ..++... -.+.-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhh
Confidence 53 144567777777777777777777776665521 1222222 12333
Q ss_pred HHHcCCChHHHHHHHHHhHhhcCCC--CCcchHHHHHHHHhhcCCHHHHHHHHHhCC-CCc--hhhHHHHHHHHHHhcCC
Q 038303 321 ACSHGGLVDQGLILFKAMSTVYEIV--PQMQHYACVVDMYGRAGLLEEAEAFIREMP-IEA--EWSVWGALLNACRIHRN 395 (461)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p--~~~~~~~l~~~~~~~~~ 395 (461)
++.+....+....+...... ..+. -+...|.-+.++|...|++.+|+.+|..+. ..+ +...|-.+..+|...|.
T Consensus 386 cL~~L~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhcccccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 45555666666666666665 4533 347788899999999999999999999992 222 34578888889999999
Q ss_pred hHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHH
Q 038303 396 DEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIR 441 (461)
Q Consensus 396 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 441 (461)
+++|++.+++++...|.+..+-..|...+.+.|+.++|.++++.+.
T Consensus 465 ~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999876
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=2e-13 Score=125.05 Aligned_cols=284 Identities=9% Similarity=-0.030 Sum_probs=172.1
Q ss_pred CCChHHHHHHHhcC-CCCCCchhHHH-HHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHH
Q 038303 89 CGFHKEAIDMFCGI-DVKPNANTLVS-VLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLF 166 (461)
Q Consensus 89 ~~~~~~a~~~~~~m-~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 166 (461)
.|+++.|.+.+... ...+++..+.. ...+..+.|+.+.+.+.+.++.+....+...........+...|++++|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46666666555544 11111122211 12223455566666666665554322221122122244555555665555555
Q ss_pred hcCCC---CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCC
Q 038303 167 VKMPK---RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243 (461)
Q Consensus 167 ~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~ 243 (461)
+++.+ .+......+...|.+.|++++|.+++..+.+.+ ..+ ......+-
T Consensus 177 ~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~-~~~-~~~~~~l~-------------------------- 228 (398)
T PRK10747 177 DKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH-VGD-EEHRAMLE-------------------------- 228 (398)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-CCC-HHHHHHHH--------------------------
Confidence 55543 234445555555566666666666666655543 111 11110000
Q ss_pred CcchHHHHHHHHHHhcCCHHHHHHHHHHccC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 038303 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAY---KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALIS 320 (461)
Q Consensus 244 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 320 (461)
...+..++.......+.+...++++.+.+ .++.....+...+...|+.++|.+++++..+. .|+... .++.
T Consensus 229 --~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~ 302 (398)
T PRK10747 229 --QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLI 302 (398)
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHH
Confidence 01222333333444556666666666653 36777888888899999999999999888774 344422 2334
Q ss_pred HHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCchhhHHHHHHHHHHhcCChHHH
Q 038303 321 ACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDEMF 399 (461)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a 399 (461)
+....++.+++.+..+...+ ..+-|...+..+...+.+.|++++|.+.|+.. ...|+...+..+...+.+.|+.++|
T Consensus 303 ~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 303 PRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEA 380 (398)
T ss_pred hhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 44566889999999988877 45566677888889999999999999999988 7778888888888889999999999
Q ss_pred HHHHHHHhh
Q 038303 400 DRIRQDLVN 408 (461)
Q Consensus 400 ~~~~~~~~~ 408 (461)
.+++++...
T Consensus 381 ~~~~~~~l~ 389 (398)
T PRK10747 381 AAMRRDGLM 389 (398)
T ss_pred HHHHHHHHh
Confidence 999988865
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.66 E-value=6.3e-12 Score=117.58 Aligned_cols=431 Identities=12% Similarity=0.071 Sum_probs=298.8
Q ss_pred cchHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhC---CCCCceeHHHHHHHH
Q 038303 10 HYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV---VFPDVVSWTTIISGL 86 (461)
Q Consensus 10 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~li~~~ 86 (461)
....-...+.+...|+.++|.+++.+.++..+. ....|-.|...|-..|+.+++...+--. .+.|...|-.+-...
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 333444444555569999999999999998754 7788999999999999999998877443 566778899999999
Q ss_pred HcCCChHHHHHHHhcC-CCCC-CchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHH----HHHHHHHHHcCChh
Q 038303 87 SKCGFHKEAIDMFCGI-DVKP-NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD----NAILDFYIRCGSLA 160 (461)
Q Consensus 87 ~~~~~~~~a~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~ 160 (461)
.+.|++++|.-+|.+. ...| +...+---...|-+.|+...|.+-|.++....++.+..-. ...++.+...++-+
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999998 5555 4445555667788999999999999999998664333322 33456677777778
Q ss_pred hHHHHHhcCCC-----CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC----------------------hhhH
Q 038303 161 SCGYLFVKMPK-----RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN----------------------EATL 213 (461)
Q Consensus 161 ~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----------------------~~~~ 213 (461)
.|.+.++.... -+...++.++..+.+...++.|......+.... ..+| ...|
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~-~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRE-SEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccc-cCCChhhhhhhhhccccccccccCCCCCCc
Confidence 88888877754 355678899999999999999999988887611 1111 1111
Q ss_pred H----HHHHHhhccchhhhHHHHHHHHHhhcC--CCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCC----ChhhHHHH
Q 038303 214 V----NVLSACSSISALSFGKYVHSYISTRYD--LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK----DKISWSTV 283 (461)
Q Consensus 214 ~----~~l~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l 283 (461)
. .+.-++......+....+...+.. .. ..-+...|.-+..+|...|++.+|..+|..+... +...|-.+
T Consensus 377 ~l~v~rl~icL~~L~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 377 DLRVIRLMICLVHLKERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred cchhHhHhhhhhcccccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 1 223334455555555556666655 44 3344567888999999999999999999998853 56789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCH-hHHHHHHHHHHcCCChHHHHHHHHHhHh-------hcCCCCCcchHHHHH
Q 038303 284 ISGLAMNGCGRQALQLFSLMIINAVFPDD-VTFIALISACSHGGLVDQGLILFKAMST-------VYEIVPQMQHYACVV 355 (461)
Q Consensus 284 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~l~ 355 (461)
..+|-..|..+.|.+.|+..... .|+. ..-..|-..+.+.|+.++|.+.++.+.. ..+..|+........
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 99999999999999999999884 4544 4455666678889999999999988532 134555666666667
Q ss_pred HHHhhcCCHHHHHHHHHhC--------CCCc-----------------hhhHHHHHHHHHHhcCChHHHHHHHHHH----
Q 038303 356 DMYGRAGLLEEAEAFIREM--------PIEA-----------------EWSVWGALLNACRIHRNDEMFDRIRQDL---- 406 (461)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~~--------~~~p-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~---- 406 (461)
..+.+.|+.++=......| -+-| .......++.+-.+.++..........-
T Consensus 534 d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~ 613 (895)
T KOG2076|consen 534 DILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFR 613 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhh
Confidence 7788888887755444433 0001 1111122222222333322222211111
Q ss_pred ----hhcCCCC-hhHHHHHHHHHhccCChhhHHHHHHHHHHcCC
Q 038303 407 ----VNKKGVS-VGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445 (461)
Q Consensus 407 ----~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 445 (461)
......+ -..+..++..+.+.+++++|+.+...+.+..+
T Consensus 614 ~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~ 657 (895)
T KOG2076|consen 614 AVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYI 657 (895)
T ss_pred hhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh
Confidence 0011111 13556677788999999999999988876544
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.65 E-value=8.4e-16 Score=134.54 Aligned_cols=256 Identities=13% Similarity=0.056 Sum_probs=110.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHH-HHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhc
Q 038303 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVN-VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKC 259 (461)
Q Consensus 181 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~-~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 259 (461)
...+.+.|++++|++++++..... .+|+...|-. +...+...++.+.|...++.+.. .+.. ++..+..++.. ...
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~-~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~-~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKI-APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLA-SDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccc-cccc-ccccccccccc-ccc
Confidence 334445555555555554333221 1233333222 22333444555555555555544 2211 34445566665 678
Q ss_pred CCHHHHHHHHHHccC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCCHhHHHHHHHHHHcCCChHHHHHHHH
Q 038303 260 GDVGIAIQVFNMLAY--KDKISWSTVISGLAMNGCGRQALQLFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFK 336 (461)
Q Consensus 260 g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 336 (461)
+++++|.++++..-+ ++...+...+..+.+.++++++.+++++..... ..++...|..+...+.+.|+.++|++.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888876543 456667778888889999999999999977543 34566777888888999999999999999
Q ss_pred HhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC--CCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCh
Q 038303 337 AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414 (461)
Q Consensus 337 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 414 (461)
+..+ -.|.+......++..+...|+.+++.++++.. ..+.++..+..+..++...|+.++|...+++.....|.|+
T Consensus 171 ~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 171 KALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 9987 23345778888999999999999988888777 2234556778888889999999999999999999999999
Q ss_pred hHHHHHHHHHhccCChhhHHHHHHHHHH
Q 038303 415 GTFALMSNTFAGADRWEDTNKIRDEIRR 442 (461)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 442 (461)
.+...++.++...|+.++|.++.++..+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999887643
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.63 E-value=1.3e-12 Score=119.71 Aligned_cols=276 Identities=9% Similarity=0.018 Sum_probs=196.0
Q ss_pred cCChhhHHHHHhcCCCC--chhHHHHH-HHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHH--HHHHHhhccchhhhHH
Q 038303 156 CGSLASCGYLFVKMPKR--NVVSWTTM-IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV--NVLSACSSISALSFGK 230 (461)
Q Consensus 156 ~g~~~~a~~~~~~~~~~--~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--~~l~~~~~~~~~~~a~ 230 (461)
.|++++|++.+....+. +...+..+ .....+.|+++.|...+.++.+ ..|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~---~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAE---LADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 57777777777765442 22222222 3344677788888888887766 555554333 2245667778888888
Q ss_pred HHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCCh-----------hhHHHHHHHHHhcCChHHHHHH
Q 038303 231 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK-----------ISWSTVISGLAMNGCGRQALQL 299 (461)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~ 299 (461)
..++.+.+ ..+-++.+...+...|.+.|++++|.+++..+.+... ..|..++.......+.+...++
T Consensus 174 ~~l~~~~~--~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 174 HGVDKLLE--VAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHh--cCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88777766 2344456677788888888888888888888774321 1333444444455566777777
Q ss_pred HHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc
Q 038303 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA 378 (461)
Q Consensus 300 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 378 (461)
++.+.+. .+.+......+...+...|+.++|.+++++..+ . +|+... .++.+....++.+++.+..+.. +..|
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-R--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-c--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCC
Confidence 7776543 345778888899999999999999999998876 2 344432 2344445669999999999988 5556
Q ss_pred hhh-HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 038303 379 EWS-VWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 379 ~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 443 (461)
+.. ....+...|...+++++|.+.|+.+.+..|. ...+..+..++.+.|+.++|.+++++-...
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 554 5667777799999999999999999987765 457889999999999999999999877543
No 38
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.62 E-value=2e-12 Score=111.73 Aligned_cols=386 Identities=12% Similarity=0.056 Sum_probs=250.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC----CCcee-HHHHHHHHHcCCChHHHHHHHhcC-CCCCCc------hhHHHHHHH
Q 038303 50 SLLHFYVTVKDIFSAHQIFNSVVF----PDVVS-WTTIISGLSKCGFHKEAIDMFCGI-DVKPNA------NTLVSVLSA 117 (461)
Q Consensus 50 ~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~li~~~~~~~~~~~a~~~~~~m-~~~p~~------~~~~~ll~~ 117 (461)
.|..-|.......+|+..|+-+++ ||.-. --.+.+.+.+..++.+|+++|+-. ...|+. ...+.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 344455556778889888876643 33322 223456788899999999999766 333432 334555556
Q ss_pred hcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCC----------------CchhHHHH--
Q 038303 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK----------------RNVVSWTT-- 179 (461)
Q Consensus 118 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------------~~~~~~~~-- 179 (461)
+.+.|.++.|..-|+...+. .|+..+-..|+-++..-|+.++..+.|.+|.. |+....|.
T Consensus 286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 88999999999999999886 35655555566677778999999999988863 23333322
Q ss_pred ---HHHHHHhcCC--hHHHHHHHHHHHhcCCCCCChhh-H------------H--------HHHHHhhccchhhhHHHHH
Q 038303 180 ---MIGGYAERGF--CKEAVSVFQEMEKTKEAEPNEAT-L------------V--------NVLSACSSISALSFGKYVH 233 (461)
Q Consensus 180 ---li~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~-~------------~--------~~l~~~~~~~~~~~a~~~~ 233 (461)
.+.-+-+.+. .++++-.-.+++.-- +.|+-.. + . .-...+.+.|+++.|.+++
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapv-i~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPV-IAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccc-cccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 2222222222 222222222222211 2222110 0 0 0112267889999999999
Q ss_pred HHHHhhcCCCCcchHHHHHHHH------------------------------------HHhcCCHHHHHHHHHHccCCCh
Q 038303 234 SYISTRYDLSVSNLVGNAVINM------------------------------------YVKCGDVGIAIQVFNMLAYKDK 277 (461)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~li~~------------------------------------~~~~g~~~~a~~~~~~~~~~~~ 277 (461)
+-+.++ ........-+.|... ....|++++|.+.+.+....|.
T Consensus 443 kv~~~k-dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 443 KVFEKK-DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred HHHHhc-cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence 888773 222222222222111 1134677788888877777665
Q ss_pred hhHHHHHH---HHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHH
Q 038303 278 ISWSTVIS---GLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354 (461)
Q Consensus 278 ~~~~~l~~---~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 354 (461)
..-.+|.. .+-..|+.++|++.|-++..- +..+......+...|....+...|++++..... -++.|+.+.+.|
T Consensus 522 sc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl 598 (840)
T KOG2003|consen 522 SCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKL 598 (840)
T ss_pred HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHH
Confidence 54444433 356678999999988877543 233566777778888888999999999877755 567778999999
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CC-CchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHH-HHHhccCChh
Q 038303 355 VDMYGRAGLLEEAEAFIREM-PI-EAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS-NTFAGADRWE 431 (461)
Q Consensus 355 ~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~ 431 (461)
...|-+.|+-..|.+..-+- .. +.+..+..-|...|....-.+.++.+|++..-..| +..-|..++ .++.+.|++.
T Consensus 599 ~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp-~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP-NQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHhcccHH
Confidence 99999999999999876554 32 33555666666667778888999999999865555 445555554 5566789999
Q ss_pred hHHHHHHHHHHc
Q 038303 432 DTNKIRDEIRRM 443 (461)
Q Consensus 432 ~A~~~~~~m~~~ 443 (461)
.|.++++...++
T Consensus 678 ka~d~yk~~hrk 689 (840)
T KOG2003|consen 678 KAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 39
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.61 E-value=1.2e-12 Score=121.79 Aligned_cols=127 Identities=16% Similarity=0.060 Sum_probs=92.9
Q ss_pred HHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCC-----CCchhhHHHHHHHHHH
Q 038303 317 ALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP-----IEAEWSVWGALLNACR 391 (461)
Q Consensus 317 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~ 391 (461)
.++..|++.-+..+++..-++... .-++ ..|..||+.++...+.+.|..+.++.. ..-|..-+..+.....
T Consensus 464 ql~l~l~se~n~lK~l~~~ekye~-~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~ 539 (1088)
T KOG4318|consen 464 QLHLTLNSEYNKLKILCDEEKYED-LLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQ 539 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHH
Confidence 344445554555555544433333 1221 578889999999999999999998882 2345556777888888
Q ss_pred hcCChHHHHHHHHHHhh---cCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcCCcc
Q 038303 392 IHRNDEMFDRIRQDLVN---KKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447 (461)
Q Consensus 392 ~~~~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 447 (461)
+.+....+..+++++.+ +.+....++..+.......|+.+...++.+-+...|+.-
T Consensus 540 r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 540 RLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 89999999999998887 334456778888888899999999999999998888765
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2e-11 Score=105.90 Aligned_cols=191 Identities=11% Similarity=0.054 Sum_probs=131.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHccCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHH
Q 038303 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKD---KISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323 (461)
Q Consensus 247 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 323 (461)
.++..+.+-|+-.++.++|...|++..+-| ...|+.+.+-|...++...|.+.++..++-.. -|-..|-.|.++|.
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p-~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP-RDYRAWYGLGQAYE 409 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc-hhHHHHhhhhHHHH
Confidence 445666677777777778888777776433 35677777777777888888888887777532 25577777888888
Q ss_pred cCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC--CCCchhhHHHHHHHHHHhcCChHHHHH
Q 038303 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMFDR 401 (461)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~ 401 (461)
-.+...-|+-+|++..+ --+-|...|.+|.++|.+.++.++|.+.|.+. ....+...+..+...|.+.++.++|.+
T Consensus 410 im~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 88888888888877765 23445777788888888888888888887777 222244567777777778888888877
Q ss_pred HHHHHhh-------cCCCChhHHHHHHHHHhccCChhhHHHHHHHH
Q 038303 402 IRQDLVN-------KKGVSVGTFALMSNTFAGADRWEDTNKIRDEI 440 (461)
Q Consensus 402 ~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 440 (461)
.+++-++ ..+....+..-|+.-+.+.+++++|.......
T Consensus 488 ~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 488 YYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 7777665 11223334444666677777777776655444
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=2.1e-13 Score=123.22 Aligned_cols=281 Identities=10% Similarity=-0.061 Sum_probs=211.7
Q ss_pred ChhhHHHHHhcCCC--Cch-hHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CChhhHHHHHHHhhccchhhhHHHHH
Q 038303 158 SLASCGYLFVKMPK--RNV-VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE-PNEATLVNVLSACSSISALSFGKYVH 233 (461)
Q Consensus 158 ~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~~~l~~~~~~~~~~~a~~~~ 233 (461)
+..+|...|.+.++ +++ .+...+..+|...+++++|.++|+.+.+..... -+..+|.+.+--+-+ +.+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 45788888888654 333 445567788999999999999999998742111 134556655543321 1222222
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 038303 234 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP 310 (461)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 310 (461)
.+-.- ...+-.+.+|.++.++|.-+++.+.|++.|++..+- ...+|+.+..-+....++|+|...|+..+.. .|
T Consensus 410 aq~Li-~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~ 486 (638)
T KOG1126|consen 410 AQDLI-DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DP 486 (638)
T ss_pred HHHHH-hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cc
Confidence 22222 244556789999999999999999999999998864 4578888888899999999999999998653 23
Q ss_pred CH-hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHH
Q 038303 311 DD-VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALL 387 (461)
Q Consensus 311 ~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 387 (461)
.. ..|--+...|.+.++++.|+-.|+++.+ --+.+......+...+.+.|+.++|+.+++++ ...| |+..----.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 22 4455566779999999999999999976 22345667777888899999999999999998 3333 333333344
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcCCcc
Q 038303 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447 (461)
Q Consensus 388 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 447 (461)
..+...+++++|.+.++++++..|.+..+|..+++.|.+.|+.+.|+.-|.-+.+...++
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 557788999999999999999999999999999999999999999999998887755443
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.60 E-value=1.9e-12 Score=119.34 Aligned_cols=287 Identities=9% Similarity=-0.010 Sum_probs=175.1
Q ss_pred cCCChHHHHHHHhcC-CCCCCchhH-HHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHH
Q 038303 88 KCGFHKEAIDMFCGI-DVKPNANTL-VSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYL 165 (461)
Q Consensus 88 ~~~~~~~a~~~~~~m-~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 165 (461)
..|+++.|.+.+.+. ...|+...+ -....+....|+.+.+.+.+....+..+.+...........+...|++++|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 456777777776665 444543332 223344556667777777776665544333323333345556666666666666
Q ss_pred HhcCCC--C-chhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCC
Q 038303 166 FVKMPK--R-NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242 (461)
Q Consensus 166 ~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~ 242 (461)
++.+.+ | +..++..+...+...|++++|.+++....+.+ .. +...+..+-.
T Consensus 176 l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-~~-~~~~~~~l~~------------------------ 229 (409)
T TIGR00540 176 VDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG-LF-DDEEFADLEQ------------------------ 229 (409)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-CC-CHHHHHHHHH------------------------
Confidence 666554 2 44455566666666666666666666666653 22 1111110000
Q ss_pred CCcchHHHHHHHHHHhcCCHHHHHHHHHHccC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhH--HHH
Q 038303 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY---KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVT--FIA 317 (461)
Q Consensus 243 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ 317 (461)
..+..++..-......+...+.++...+ .+...+..+...+...|+.++|.+++++..+.. ||... +..
T Consensus 230 ----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~ 303 (409)
T TIGR00540 230 ----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPL 303 (409)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHH
Confidence 0011111111122233444555555543 367778888888889999999999999888853 34331 111
Q ss_pred HH-HHHHcCCChHHHHHHHHHhHhhcCCCCCc--chHHHHHHHHhhcCCHHHHHHHHHh--C-CCCchhhHHHHHHHHHH
Q 038303 318 LI-SACSHGGLVDQGLILFKAMSTVYEIVPQM--QHYACVVDMYGRAGLLEEAEAFIRE--M-PIEAEWSVWGALLNACR 391 (461)
Q Consensus 318 ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~ 391 (461)
+. -.....++.+.+.+.++...+. .+-|+ ....++...+.+.|++++|.+.|+. . ...|+...+..+...+.
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~ 381 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFD 381 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH
Confidence 21 2234457788888888887763 33334 5667888899999999999999994 3 66788888888888899
Q ss_pred hcCChHHHHHHHHHHhh
Q 038303 392 IHRNDEMFDRIRQDLVN 408 (461)
Q Consensus 392 ~~~~~~~a~~~~~~~~~ 408 (461)
+.|+.++|.+++++...
T Consensus 382 ~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 382 QAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998765
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=5e-15 Score=129.64 Aligned_cols=154 Identities=16% Similarity=0.131 Sum_probs=64.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHcc-----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HhHHHHHHHHHH
Q 038303 250 NAVINMYVKCGDVGIAIQVFNMLA-----YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD-DVTFIALISACS 323 (461)
Q Consensus 250 ~~li~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~ 323 (461)
..++..+.+.++++++.++++.+. ..+...|..+...+.+.|+.++|++.+++..+. .|+ ......++..+.
T Consensus 114 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li 191 (280)
T PF13429_consen 114 LSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLI 191 (280)
T ss_dssp ----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 344444444555555555444432 123344455555555555555555555555553 232 344455555555
Q ss_pred cCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHH
Q 038303 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDR 401 (461)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 401 (461)
..|+.+++.++++...+ ..+.++..+..+..+|...|+.++|+.++++. ...| |+.....+..++...|+.++|.+
T Consensus 192 ~~~~~~~~~~~l~~~~~--~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 192 DMGDYDEAREALKRLLK--AAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp TTCHHHHHHHHHHHHHH--H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred HCCChHHHHHHHHHHHH--HCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 55555555555555544 12344445555555555556666666665555 2222 44444445555555566666655
Q ss_pred HHHHHh
Q 038303 402 IRQDLV 407 (461)
Q Consensus 402 ~~~~~~ 407 (461)
+.+++.
T Consensus 270 ~~~~~~ 275 (280)
T PF13429_consen 270 LRRQAL 275 (280)
T ss_dssp ------
T ss_pred cccccc
Confidence 555543
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=3.7e-11 Score=104.31 Aligned_cols=318 Identities=7% Similarity=-0.027 Sum_probs=224.2
Q ss_pred HhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCCCch-hHHHHHHHHHHhcCChHHHHH
Q 038303 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNV-VSWTTMIGGYAERGFCKEAVS 195 (461)
Q Consensus 117 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~ 195 (461)
.+.+.|..+.|...|...+.. .+..-..|..|.. -..+.+.+..+.......+. ..=-.+..++....+.+++..
T Consensus 173 v~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~---lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~ 248 (559)
T KOG1155|consen 173 VLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSE---LITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQ 248 (559)
T ss_pred HHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHH---hhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666554 1122333332222 22233333333323322111 111123345555567788888
Q ss_pred HHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCC-cchHHHHHHHHHHhcCCHHHHHHHHHHccC
Q 038303 196 VFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV-SNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274 (461)
Q Consensus 196 ~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 274 (461)
-.+.....| ++.+...-+....+.-...+++.|+.+|+++.+...... |..+|+.++-.--...++.---...-.+.+
T Consensus 249 k~e~l~~~g-f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idK 327 (559)
T KOG1155|consen 249 KKERLSSVG-FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDK 327 (559)
T ss_pred HHHHHHhcc-CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 788887776 666666666666667778889999999999988433332 344666555332222222221122222334
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHH
Q 038303 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354 (461)
Q Consensus 275 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 354 (461)
--+.|..++.+-|.-.++.++|...|++..+.+.. ....|+.+.+-|...++...|.+-++...+ -.+.|-..|-.|
T Consensus 328 yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGL 404 (559)
T KOG1155|consen 328 YRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGL 404 (559)
T ss_pred CCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhh
Confidence 45677778888888899999999999999985432 346788888889999999999999999988 456678899999
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhh
Q 038303 355 VDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWED 432 (461)
Q Consensus 355 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 432 (461)
.++|.-.+.+.-|+-+|++. ..+| |...|.+|..+|.+.++.++|+..|+.+......+...+..+++.|-+.++.++
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999 4555 777999999999999999999999999999887788899999999999999999
Q ss_pred HHHHHHHHHH
Q 038303 433 TNKIRDEIRR 442 (461)
Q Consensus 433 A~~~~~~m~~ 442 (461)
|.+.+++-.+
T Consensus 485 Aa~~yek~v~ 494 (559)
T KOG1155|consen 485 AAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHH
Confidence 9999988755
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.59 E-value=9.7e-12 Score=114.66 Aligned_cols=280 Identities=12% Similarity=0.021 Sum_probs=170.2
Q ss_pred HcCChhhHHHHHhcCCC--Cchh-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChh--hHHHHHHHhhccchhhhH
Q 038303 155 RCGSLASCGYLFVKMPK--RNVV-SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEA--TLVNVLSACSSISALSFG 229 (461)
Q Consensus 155 ~~g~~~~a~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~~~l~~~~~~~~~~~a 229 (461)
..|+++.|.+.+.+..+ |+.. .+-....+....|+++.|.+.+.+..+ ..|+.. ........+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~---~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAE---LAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 34566666666555443 2221 222233445555666666666666554 233332 222234555556666666
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCC---ChhhHH----HHHHHHHhcCChHHHHHHHHH
Q 038303 230 KYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DKISWS----TVISGLAMNGCGRQALQLFSL 302 (461)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~----~l~~~~~~~~~~~~a~~~~~~ 302 (461)
...++.+.+. .+-+..+...+...+...|++++|.+.+..+.+. +...+. ....++...+..+++.+.+..
T Consensus 173 l~~l~~l~~~--~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEM--APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 6666666552 2223345566667777777777777777666633 222221 111122223333333445555
Q ss_pred HHhcCC---CCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcch--HHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 038303 303 MIINAV---FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQH--YACVVDMYGRAGLLEEAEAFIREM-PI 376 (461)
Q Consensus 303 m~~~g~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~-~~ 376 (461)
+.+... +.+...+..+...+...|+.++|.+++++..+. .+.+... ...........++.+.+.+.+++. ..
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 544322 137788888899999999999999999999872 2222221 111222234457888888888877 44
Q ss_pred Cchh---hHHHHHHHHHHhcCChHHHHHHHHH--HhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHH
Q 038303 377 EAEW---SVWGALLNACRIHRNDEMFDRIRQD--LVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442 (461)
Q Consensus 377 ~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 442 (461)
.|+. ....++...+.+.|++++|.+.|+. ..+.. |++..+..++..+.+.|+.++|.+++++...
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~-p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQ-LDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4544 4456777789999999999999995 44444 4566688999999999999999999998643
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=7.6e-11 Score=104.93 Aligned_cols=422 Identities=11% Similarity=-0.039 Sum_probs=295.5
Q ss_pred chHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhh--CCCCCceeHHHHHHHHHc
Q 038303 11 YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS--VVFPDVVSWTTIISGLSK 88 (461)
Q Consensus 11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~li~~~~~ 88 (461)
.-+..+++-+..+.++.-|+-+-+.....+..|+..- -+.+++.-.|+++.|..+... +...|..+......++.+
T Consensus 17 ~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~--~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~ 94 (611)
T KOG1173|consen 17 EKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIY--WLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVK 94 (611)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHH--HHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 3355666666666677777777777766554444433 356777778888888777754 466788888888888899
Q ss_pred CCChHHHHHHHh----cC-CC-----------CCCchh----HHHHHHH-------hcccchhHHHHHHHHHHHhhcCCC
Q 038303 89 CGFHKEAIDMFC----GI-DV-----------KPNANT----LVSVLSA-------CSSLVSHKLGKAIHAHSLRNLNEN 141 (461)
Q Consensus 89 ~~~~~~a~~~~~----~m-~~-----------~p~~~~----~~~ll~~-------~~~~~~~~~a~~~~~~~~~~~~~~ 141 (461)
..++++|+.++. .+ .+ .+|..- -+.-.+. +....+.++|...|.+.....+.
T Consensus 95 lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~- 173 (611)
T KOG1173|consen 95 LKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK- 173 (611)
T ss_pred HHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh-
Confidence 999999999887 33 11 111111 1111122 33344566666666665544322
Q ss_pred ChhHHHHHHHHHHH------------------cCChhhHHHHHhcC----CC----------------CchhHHHHHHHH
Q 038303 142 NIILDNAILDFYIR------------------CGSLASCGYLFVKM----PK----------------RNVVSWTTMIGG 183 (461)
Q Consensus 142 ~~~~~~~l~~~~~~------------------~g~~~~a~~~~~~~----~~----------------~~~~~~~~li~~ 183 (461)
.-..+..++....- ..+.+.-..+|+-. .. .+.........-
T Consensus 174 c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~ 253 (611)
T KOG1173|consen 174 CFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADR 253 (611)
T ss_pred hHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHH
Confidence 11111111111110 00111122222211 00 233344444556
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHH
Q 038303 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263 (461)
Q Consensus 184 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 263 (461)
+...+++.+..++.+...+. .++....+..-|.++...|+..+-..+-..+.+ ..+..+.+|-++.--|...|+..
T Consensus 254 ~y~~c~f~~c~kit~~lle~--dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~--~yP~~a~sW~aVg~YYl~i~k~s 329 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEK--DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVD--LYPSKALSWFAVGCYYLMIGKYS 329 (611)
T ss_pred HHHcChHHHHHHHhHHHHhh--CCCCcchHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCCcchhhHHHHHHHhcCcH
Confidence 77789999999999999887 677777777778888888888777777777776 55666778899999999999999
Q ss_pred HHHHHHHHccCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHh
Q 038303 264 IAIQVFNMLAYKD---KISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340 (461)
Q Consensus 264 ~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 340 (461)
+|.+.|.+...-| ...|-.+..+|+-.|..|+|+..+...-+. ++-....+--+.--|.+.++++.|.++|.....
T Consensus 330 eARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 330 EARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA 408 (611)
T ss_pred HHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 9999998876433 468999999999999999999999887663 111222333344568889999999999998876
Q ss_pred hcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC--------CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 038303 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM--------PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKG 411 (461)
Q Consensus 341 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 411 (461)
-.|-|+...+-+.-.....+.+.+|..+|+.. +..+ -..+++.|..+|.+.+.+++|+..+++.+...|
T Consensus 409 --i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~ 486 (611)
T KOG1173|consen 409 --IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP 486 (611)
T ss_pred --cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 44556777787777777889999999999876 1112 344688889999999999999999999999999
Q ss_pred CChhHHHHHHHHHhccCChhhHHHHHHHHHH
Q 038303 412 VSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442 (461)
Q Consensus 412 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 442 (461)
.+..++..++-.|...|+++.|.+.|.+..-
T Consensus 487 k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 487 KDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred CchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 9999999999999999999999999988654
No 47
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=3.1e-10 Score=98.97 Aligned_cols=420 Identities=8% Similarity=0.023 Sum_probs=299.0
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCc-eeHHHHHHHHHcCCCh
Q 038303 16 ALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--PDV-VSWTTIISGLSKCGFH 92 (461)
Q Consensus 16 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~ 92 (461)
..+.=...+++..|.++|+..+.... .+...|..-+..=.+...+..|..+|+..+. |-+ ..|--.+..=-..|++
T Consensus 79 YaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi 157 (677)
T KOG1915|consen 79 YAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNI 157 (677)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccc
Confidence 33344456788889999999988664 4777787778888888999999999988743 222 2233333333456899
Q ss_pred HHHHHHHhcC-CCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCC
Q 038303 93 KEAIDMFCGI-DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK 171 (461)
Q Consensus 93 ~~a~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 171 (461)
..|.++|+.. ...|+...|.+.++.=.+...++.|..+++..+-. .|+...|-...+.-.+.|+..-|..+|+...+
T Consensus 158 ~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 158 AGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 9999999877 99999999999999988999999999999988754 47888888888888899999999999888764
Q ss_pred ------CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC--hhhHHHHHHHhhccch---hhhHHHH-----HHH
Q 038303 172 ------RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN--EATLVNVLSACSSISA---LSFGKYV-----HSY 235 (461)
Q Consensus 172 ------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~~~l~~~~~~~~---~~~a~~~-----~~~ 235 (461)
.+...+.++..--..+..++.|..+|+-..+. ++.+ ...|.....---+-|+ ++.+.-- ++.
T Consensus 236 ~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~ 313 (677)
T KOG1915|consen 236 FLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEK 313 (677)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHH
Confidence 23334555555555677888999999888875 4444 3334333333223344 3333221 233
Q ss_pred HHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCC--Ch---hhHHHHH--------HHHHhcCChHHHHHHHHH
Q 038303 236 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK--DK---ISWSTVI--------SGLAMNGCGRQALQLFSL 302 (461)
Q Consensus 236 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~---~~~~~l~--------~~~~~~~~~~~a~~~~~~ 302 (461)
..+ ..+.|-.+|--.++.-...|+.+...++|+..... .. ..|..-| -.-....+++.+.++++.
T Consensus 314 ~v~--~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~ 391 (677)
T KOG1915|consen 314 EVS--KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQA 391 (677)
T ss_pred HHH--hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 333 33444556667777777889999999999888742 11 1122111 112346788899999998
Q ss_pred HHhcCCCCCHhHHHHHHHHH----HcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 038303 303 MIINAVFPDDVTFIALISAC----SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIE 377 (461)
Q Consensus 303 m~~~g~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 377 (461)
..+. ++....||..+=-.| .++.++..|.+++.... |.-|-..++...|..-.+.+.++.+..++++. ...
T Consensus 392 ~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 392 CLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 8883 444556766554333 45789999999998774 67788899999999989999999999999987 444
Q ss_pred c-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC--hhHHHHHHHHHhccCChhhHHHHHHHHHHcCCc
Q 038303 378 A-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVS--VGTFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446 (461)
Q Consensus 378 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 446 (461)
| +-.+|......-...|+.+.|..+|+.+++....+ ...|...+.--...|.++.|..+++++.+..-.
T Consensus 468 Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 468 PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 4 55567766666778899999999999988754222 346667777777889999999999999876543
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=1.2e-12 Score=118.47 Aligned_cols=281 Identities=12% Similarity=0.003 Sum_probs=158.3
Q ss_pred hHHHHHHHhcC-CCCCC-chhHHHHHHHhcccchhHHHHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChhh-HHHHH
Q 038303 92 HKEAIDMFCGI-DVKPN-ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLN--ENNIILDNAILDFYIRCGSLAS-CGYLF 166 (461)
Q Consensus 92 ~~~a~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~-a~~~~ 166 (461)
..+|+..|+.. ...+| ......+..+|...+++++++++|+.+.+..+ .-+..+|.+.+.-+-+.=.+.- |..+.
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li 414 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLI 414 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44555555555 22232 23333445555555555555555555554422 1244445444433322111111 11111
Q ss_pred hcCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcc
Q 038303 167 VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246 (461)
Q Consensus 167 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 246 (461)
+.. +..+.+|-++.++|.-+++.+.|++.|++..+ +.| -..
T Consensus 415 ~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ---ldp-----------------------------------~fa 455 (638)
T KOG1126|consen 415 DTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ---LDP-----------------------------------RFA 455 (638)
T ss_pred hhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc---cCC-----------------------------------ccc
Confidence 111 23345555555555555555555555555544 222 133
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHH---HHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHH
Q 038303 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWST---VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323 (461)
Q Consensus 247 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 323 (461)
.+|+.+..-+.....+|.|...|+.....|+..|++ +...|.+.++++.|+-.|++..+-+.. +.+....+...+.
T Consensus 456 YayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~ 534 (638)
T KOG1126|consen 456 YAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQH 534 (638)
T ss_pred hhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHH
Confidence 444555555566666777777777776666655555 455677778888888888877774322 3355556666677
Q ss_pred cCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCchhh-HHHHHHHHHHhcCChHHHHH
Q 038303 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS-VWGALLNACRIHRNDEMFDR 401 (461)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~ 401 (461)
+.|+.++|+++++++.. --+.|+..--..+..+...+++++|+..++++ .+-|+.. .+..+...|.+.|+.+.|+.
T Consensus 535 ~~k~~d~AL~~~~~A~~--ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 535 QLKRKDKALQLYEKAIH--LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALL 612 (638)
T ss_pred HhhhhhHHHHHHHHHHh--cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHH
Confidence 77888888888887765 12223333334455666778888888888877 4445444 44555555888888888888
Q ss_pred HHHHHhhcCCCCh
Q 038303 402 IRQDLVNKKGVSV 414 (461)
Q Consensus 402 ~~~~~~~~~~~~~ 414 (461)
-|..+.+.+|...
T Consensus 613 ~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 613 HFSWALDLDPKGA 625 (638)
T ss_pred hhHHHhcCCCccc
Confidence 8888777766543
No 49
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=4e-10 Score=98.28 Aligned_cols=380 Identities=11% Similarity=0.062 Sum_probs=293.7
Q ss_pred hcCCHHHHHHHHhhCCC---CCceeHHHHHHHHHcCCChHHHHHHHhcC-CCCCCch-hHHHHHHHhcccchhHHHHHHH
Q 038303 57 TVKDIFSAHQIFNSVVF---PDVVSWTTIISGLSKCGFHKEAIDMFCGI-DVKPNAN-TLVSVLSACSSLVSHKLGKAIH 131 (461)
Q Consensus 57 ~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~ 131 (461)
..+++..|.++|+.... .+...|--.+..=.++..+..|..+++.. .+-|.+. .|.-.+..=-..|++..|.++|
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 45778889999998844 45566766777778899999999999988 6666543 3444555556779999999999
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCC--CCchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 038303 132 AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP--KRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN 209 (461)
Q Consensus 132 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 209 (461)
+.-.+ ..|+...|++.++.-.+-..++.|..++++.. .|++.+|--...---+.|+...|..+|+...+. -.|
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~---~~~ 239 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF---LGD 239 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH---hhh
Confidence 98876 47899999999999999999999999999976 499999999888889999999999999998874 233
Q ss_pred hh----hHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCc--chHHHHHHHHHHhcCCHHHHHHHH--------HHccCC
Q 038303 210 EA----TLVNVLSACSSISALSFGKYVHSYISTRYDLSVS--NLVGNAVINMYVKCGDVGIAIQVF--------NMLAYK 275 (461)
Q Consensus 210 ~~----~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~--------~~~~~~ 275 (461)
.. .+.++..--.....++.|..+|+.... .++.+ ...|..+...--+-|+.....+.. +.+.+.
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld--~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALD--HIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 33 344444444556788999999998887 33333 456666665555667755554432 333333
Q ss_pred ---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHh-------HHHHHHHHH---HcCCChHHHHHHHHHhHhhc
Q 038303 276 ---DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDV-------TFIALISAC---SHGGLVDQGLILFKAMSTVY 342 (461)
Q Consensus 276 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~ 342 (461)
|-.+|--.+..--..|+.+...++|++.+.. ++|-.. .|..+=-+| ....+.+.+.++|+...+
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-- 394 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-- 394 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--
Confidence 4566777777777889999999999999876 555331 122221122 347899999999999887
Q ss_pred CCCCCcchHHHH----HHHHhhcCCHHHHHHHHHhC-CCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHH
Q 038303 343 EIVPQMQHYACV----VDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTF 417 (461)
Q Consensus 343 ~~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 417 (461)
-++....|+..+ .....+..++..|.+++... |.-|...++...|..-.+.++++....++++.++-.|.+..+|
T Consensus 395 lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W 474 (677)
T KOG1915|consen 395 LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAW 474 (677)
T ss_pred hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHH
Confidence 555566666654 34445788999999999988 8889999999999998999999999999999999999999999
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHcCCc
Q 038303 418 ALMSNTFAGADRWEDTNKIRDEIRRMGLK 446 (461)
Q Consensus 418 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 446 (461)
...+..-...|+++.|..+|+-..++...
T Consensus 475 ~kyaElE~~LgdtdRaRaifelAi~qp~l 503 (677)
T KOG1915|consen 475 SKYAELETSLGDTDRARAIFELAISQPAL 503 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCccc
Confidence 99999999999999999999988876543
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=1.1e-10 Score=99.77 Aligned_cols=284 Identities=8% Similarity=-0.003 Sum_probs=163.5
Q ss_pred CCChHHHHHHHhcC-CCCCC-chhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHH
Q 038303 89 CGFHKEAIDMFCGI-DVKPN-ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLF 166 (461)
Q Consensus 89 ~~~~~~a~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 166 (461)
.|++..|.++..+- ...+. ...|..-..+.-..||.+.+-.++.+..+....++....-+........|+++.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 35555555555444 11111 12233333344455555555555555555444444445555555555555555555444
Q ss_pred hcCCC---CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCC
Q 038303 167 VKMPK---RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLS 243 (461)
Q Consensus 167 ~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~ 243 (461)
++..+ .++........+|.+.|++.....++.++.+.| .-.|+..-.
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~-~l~~~e~~~----------------------------- 226 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG-LLSDEEAAR----------------------------- 226 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc-CCChHHHHH-----------------------------
Confidence 44332 344455555555555555555555555555544 222211100
Q ss_pred CcchHHHHHHHHHHhcCCHHHHHHHHHHcc---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 038303 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLA---YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALIS 320 (461)
Q Consensus 244 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 320 (461)
....+++.+++-....+..+.-...|+... +.++..-.+++.-+.+.|+.++|.++..+..+++..|.. ...-
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~ 302 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLI 302 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHH
Confidence 001233444444444444444455666655 235666667777778888888888888888777766651 1222
Q ss_pred HHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCchhhHHHHHHHHHHhcCChHHH
Q 038303 321 ACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDEMF 399 (461)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a 399 (461)
.+.+.++.+.-++..+.-.+. .+-++..+.+|...|.+.+.|.+|...|+.. +..|+..+|+.+..++.+.|+.+.|
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~--h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQ--HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence 455677777777777666663 3334467777888888888888888888866 6777888888888888888888888
Q ss_pred HHHHHHHhh
Q 038303 400 DRIRQDLVN 408 (461)
Q Consensus 400 ~~~~~~~~~ 408 (461)
.+..++...
T Consensus 381 ~~~r~e~L~ 389 (400)
T COG3071 381 EQVRREALL 389 (400)
T ss_pred HHHHHHHHH
Confidence 877777664
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=1.7e-11 Score=101.52 Aligned_cols=197 Identities=11% Similarity=0.053 Sum_probs=101.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHccCCCh--------hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 038303 251 AVINMYVKCGDVGIAIQVFNMLAYKDK--------ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322 (461)
Q Consensus 251 ~li~~~~~~g~~~~a~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 322 (461)
.|+..|-...+|++|+++-+++.+.+. ..|.-+...+....++++|..++.+..+.+.+ ....-..+.+..
T Consensus 146 qLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~ 224 (389)
T COG2956 146 QLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVE 224 (389)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHH
Confidence 344444445555555544443332211 12334444444556666666666666654322 112222334455
Q ss_pred HcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCchhhHHHHHHHHHHhcCChHHHHH
Q 038303 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDEMFDR 401 (461)
Q Consensus 323 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~ 401 (461)
...|+++.|.+.++.+.+ .+..--+.+...|..+|...|+.++....+.++ ...+....-..+...-....-.+.|..
T Consensus 225 ~~~g~y~~AV~~~e~v~e-Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~ 303 (389)
T COG2956 225 LAKGDYQKAVEALERVLE-QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQA 303 (389)
T ss_pred HhccchHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHH
Confidence 666777777776666665 333333455566666677777777776666665 333333333444444333444444444
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHh---ccCChhhHHHHHHHHHHcCCccccC
Q 038303 402 IRQDLVNKKGVSVGTFALMSNTFA---GADRWEDTNKIRDEIRRMGLKKKTG 450 (461)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~g~~~~~~ 450 (461)
.+.+-.... |+...+..++.... ..|++.+-+..++.|...-++.+|.
T Consensus 304 ~l~~Ql~r~-Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 304 YLTRQLRRK-PTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred HHHHHHhhC-CcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 444444333 34445555555443 2345666667777776666655553
No 52
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.49 E-value=6.1e-10 Score=100.87 Aligned_cols=442 Identities=11% Similarity=-0.009 Sum_probs=284.6
Q ss_pred CCCCcch-HHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCceeHHH
Q 038303 6 SSYNHYT-FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF---PDVVSWTT 81 (461)
Q Consensus 6 ~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ 81 (461)
++|-..+ |-.+++ |...+++...++..+.+++.- +--..|....--.+...|+-++|........+ .+.++|..
T Consensus 3 l~~KE~~lF~~~lk-~yE~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv 80 (700)
T KOG1156|consen 3 LSPKENALFRRALK-CYETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHV 80 (700)
T ss_pred CChHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHH
Confidence 3444444 444444 457788999999999988843 22233333222345568999999999887754 45678998
Q ss_pred HHHHHHcCCChHHHHHHHhcC-CCCCC-chhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCh
Q 038303 82 IISGLSKCGFHKEAIDMFCGI-DVKPN-ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSL 159 (461)
Q Consensus 82 li~~~~~~~~~~~a~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 159 (461)
+.-.+-...++++|+++|... .+.|| ...+.-+--.-++.|+++..........+..+. ....|..++.++.-.|+.
T Consensus 81 ~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 81 LGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHH
Confidence 888888889999999999988 77775 445555544456778888888777777776444 566788888888889999
Q ss_pred hhHHHHHhcCCC-----CchhHHHHH------HHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhh
Q 038303 160 ASCGYLFVKMPK-----RNVVSWTTM------IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228 (461)
Q Consensus 160 ~~a~~~~~~~~~-----~~~~~~~~l------i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 228 (461)
..|..++++..+ |+...|... .....+.|..+.|++.+..-... +......-.+-...+.+.+++++
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEe 237 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEE 237 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHh
Confidence 999888877654 444443322 23466788888888887765542 22222333344566788899999
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHH-HHHHHccCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038303 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI-QVFNMLAYK---DKISWSTVISGLAMNGCGRQALQLFSLMI 304 (461)
Q Consensus 229 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 304 (461)
|..++..+.. ..+-+...|..+..++.+-.+.-++. .+|....+. ....-..=+..+....-.+..-+++..+.
T Consensus 238 A~~~y~~Ll~--rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l 315 (700)
T KOG1156|consen 238 AVKVYRRLLE--RNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLL 315 (700)
T ss_pred HHHHHHHHHh--hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHh
Confidence 9999998877 33333334445555554333333333 555544421 11111111111111223344556677778
Q ss_pred hcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHh---hcC----------CCCCcchH--HHHHHHHhhcCCHHHHHH
Q 038303 305 INAVFPDDVTFIALISACSHGGLVDQGLILFKAMST---VYE----------IVPQMQHY--ACVVDMYGRAGLLEEAEA 369 (461)
Q Consensus 305 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~----------~~~~~~~~--~~l~~~~~~~g~~~~A~~ 369 (461)
+.|+++-... +...|-.....+-..++.-.+.. ..| -+|+...| -.++..+-+.|+++.|..
T Consensus 316 ~Kg~p~vf~d---l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~ 392 (700)
T KOG1156|consen 316 SKGVPSVFKD---LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALE 392 (700)
T ss_pred hcCCCchhhh---hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHH
Confidence 8887654333 33333222222211111111111 010 14554444 457888899999999999
Q ss_pred HHHhC-CCCchhhH-HHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcCCc-
Q 038303 370 FIREM-PIEAEWSV-WGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLK- 446 (461)
Q Consensus 370 ~~~~~-~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~- 446 (461)
+++.. +..|+..- |..=.+.+...|+.++|...++++.+.+.+|...-..-++-..++.+.++|.+++....+.|..
T Consensus 393 yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~ 472 (700)
T KOG1156|consen 393 YIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGA 472 (700)
T ss_pred HHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccch
Confidence 99988 66676553 3333455889999999999999999999888877778899999999999999999999888852
Q ss_pred ----cccCccccccC
Q 038303 447 ----KKTGCSWIEVN 457 (461)
Q Consensus 447 ----~~~~~~~~~~~ 457 (461)
.+..|.|..+.
T Consensus 473 ~~~L~~mqcmWf~~E 487 (700)
T KOG1156|consen 473 VNNLAEMQCMWFQLE 487 (700)
T ss_pred hhhHHHhhhHHHhHh
Confidence 23457777664
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.48 E-value=1.8e-10 Score=98.47 Aligned_cols=274 Identities=11% Similarity=0.057 Sum_probs=167.1
Q ss_pred cCCHHHHHHHHhhCCC---CCceeHHHHHHHHHcCCChHHHHHHHhcC-CCCCCch--hHHHHHHHhcccchhHHHHHHH
Q 038303 58 VKDIFSAHQIFNSVVF---PDVVSWTTIISGLSKCGFHKEAIDMFCGI-DVKPNAN--TLVSVLSACSSLVSHKLGKAIH 131 (461)
Q Consensus 58 ~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~ 131 (461)
.|+|..|+++..+..+ .....|-.-..+--..|+.+.+-..+.+. ...+|.. .+-+........|+.+.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 6999999999987632 22334444456666789999999999999 6644444 4455556688999999999999
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCCCc-----------hhHHHHHHHHHHhcCChHHHHHHHHHH
Q 038303 132 AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRN-----------VVSWTTMIGGYAERGFCKEAVSVFQEM 200 (461)
Q Consensus 132 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----------~~~~~~li~~~~~~~~~~~a~~~~~~m 200 (461)
+.+.+.++. ++.+......+|.+.|++++...++.++.+.. ..+|+.++.-....+..+.-...++..
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 999999877 67777889999999999999999999998622 235666665555555555544555555
Q ss_pred HhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCChhhH
Q 038303 201 EKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISW 280 (461)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 280 (461)
-.. .+.++..-..++.-+.+.|+.+.|.++..+..+ .+..|+
T Consensus 256 pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~~D~~----------------------------------- 297 (400)
T COG3071 256 PRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQWDPR----------------------------------- 297 (400)
T ss_pred cHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hccChh-----------------------------------
Confidence 443 344444444444444445555555554444444 333333
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhh
Q 038303 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360 (461)
Q Consensus 281 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 360 (461)
-...-.+.+-++.+.-.+..++-.+. .+-++..+.+|...|.+.+.+.+|...|+...+ ..|+..+|+.+..++.+
T Consensus 298 L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~---~~~s~~~~~~la~~~~~ 373 (400)
T COG3071 298 LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK---LRPSASDYAELADALDQ 373 (400)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHH
Confidence 11112233444444444444443332 111224445555555555555555555554433 34555555555555555
Q ss_pred cCCHHHHHHHHHhC
Q 038303 361 AGLLEEAEAFIREM 374 (461)
Q Consensus 361 ~g~~~~A~~~~~~~ 374 (461)
.|+.++|.++.++.
T Consensus 374 ~g~~~~A~~~r~e~ 387 (400)
T COG3071 374 LGEPEEAEQVRREA 387 (400)
T ss_pred cCChHHHHHHHHHH
Confidence 56555555555543
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.46 E-value=4.9e-11 Score=101.83 Aligned_cols=198 Identities=9% Similarity=0.019 Sum_probs=162.3
Q ss_pred cchHHHHHHHHHHhcCCHHHHHHHHHHccC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 038303 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAY--K-DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISA 321 (461)
Q Consensus 245 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 321 (461)
....+..+...+...|++++|.+.+++..+ | +...+..+...+...|++++|.+.+++..+... .+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 345667788889999999999999988763 2 456778888899999999999999999988643 345677778888
Q ss_pred HHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHH
Q 038303 322 CSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMF 399 (461)
Q Consensus 322 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 399 (461)
+...|++++|...++........+.....+..+...+...|++++|...+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999873223334556777888999999999999999988 3334 345677777889999999999
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 038303 400 DRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 443 (461)
...+++..+..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999887778888889999999999999999998887653
No 55
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.44 E-value=2.9e-10 Score=104.03 Aligned_cols=241 Identities=14% Similarity=0.162 Sum_probs=129.1
Q ss_pred hHHHHHHHHHHHcCChhhHHHHHhcCCC----------CchhH-HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhh
Q 038303 144 ILDNAILDFYIRCGSLASCGYLFVKMPK----------RNVVS-WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEAT 212 (461)
Q Consensus 144 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 212 (461)
.+...+...|...|+++.|+.+++...+ +.+.+ .+.+...|...+++++|..+|+++..--
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~-------- 271 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR-------- 271 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH--------
Confidence 3444466677777777777777665542 22222 3346667888888888888888876521
Q ss_pred HHHHHHHhhccchhhhHHHHHHHHHhhcCCCCc-chHHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcC
Q 038303 213 LVNVLSACSSISALSFGKYVHSYISTRYDLSVS-NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNG 291 (461)
Q Consensus 213 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 291 (461)
+... ....|. ..+++.|..+|.+.|++++|...++..
T Consensus 272 ---------------------e~~~--G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A------------------- 309 (508)
T KOG1840|consen 272 ---------------------EEVF--GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA------------------- 309 (508)
T ss_pred ---------------------HHhc--CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH-------------------
Confidence 0000 011111 234566667777777777777665432
Q ss_pred ChHHHHHHHHHHHhcCC-CCCH-hHHHHHHHHHHcCCChHHHHHHHHHhHhhcC--CCC----CcchHHHHHHHHhhcCC
Q 038303 292 CGRQALQLFSLMIINAV-FPDD-VTFIALISACSHGGLVDQGLILFKAMSTVYE--IVP----QMQHYACVVDMYGRAGL 363 (461)
Q Consensus 292 ~~~~a~~~~~~m~~~g~-~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~ 363 (461)
++++++. .|. .|.. ..++.+...|+..+++++|..++....+... +.+ -..+++.|...|.+.|+
T Consensus 310 -----l~I~~~~--~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk 382 (508)
T KOG1840|consen 310 -----LEIYEKL--LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGK 382 (508)
T ss_pred -----HHHHHHh--hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcc
Confidence 3333331 111 1111 1233333334444555555444443332111 111 12445555666666666
Q ss_pred HHHHHHHHHhC---------CCCch-hhHHHHHHHHHHhcCChHHHHHHHHHHhh-------cCCCChhHHHHHHHHHhc
Q 038303 364 LEEAEAFIREM---------PIEAE-WSVWGALLNACRIHRNDEMFDRIRQDLVN-------KKGVSVGTFALMSNTFAG 426 (461)
Q Consensus 364 ~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~l~~~~~~ 426 (461)
+++|.++++++ +..+. ...++.+...|.+.+++++|.++|.+... ..|....+|..|+..|.+
T Consensus 383 ~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~ 462 (508)
T KOG1840|consen 383 YKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRA 462 (508)
T ss_pred hhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence 66666665554 11111 22344555556666666666666665543 224456678888888888
Q ss_pred cCChhhHHHHHHHHH
Q 038303 427 ADRWEDTNKIRDEIR 441 (461)
Q Consensus 427 ~g~~~~A~~~~~~m~ 441 (461)
.|+++.|.++.+.+.
T Consensus 463 ~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 463 QGNYEAAEELEEKVL 477 (508)
T ss_pred cccHHHHHHHHHHHH
Confidence 888888888877764
No 56
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=2.1e-08 Score=90.25 Aligned_cols=409 Identities=10% Similarity=0.046 Sum_probs=231.3
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHH--HHHHHH--c
Q 038303 13 FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTT--IISGLS--K 88 (461)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--li~~~~--~ 88 (461)
+-+=++-+...|++++|.+..+.++..+. .+...+..=+-++...+++++|+.+.+.-...+ +++. +=.+|| +
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~p-dd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIVP-DDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCC-CcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHH
Confidence 33445566778899999999999998763 345555566667889999999997776553212 1222 234444 7
Q ss_pred CCChHHHHHHHhcCCCCCCc-hhHHHHHHHhcccchhHHHHHHHHHHHhhcCCC-ChhHHHHHHHHHHHcCChhhHHHHH
Q 038303 89 CGFHKEAIDMFCGIDVKPNA-NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNEN-NIILDNAILDFYIRCGSLASCGYLF 166 (461)
Q Consensus 89 ~~~~~~a~~~~~~m~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 166 (461)
.++.++|+..++. ..++. .+...-...|.+.|++++|.++|+.+.+.+.+- +...-..++. .+-.-.+. +.
T Consensus 92 lnk~Dealk~~~~--~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a----~~a~l~~~-~~ 164 (652)
T KOG2376|consen 92 LNKLDEALKTLKG--LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA----VAAALQVQ-LL 164 (652)
T ss_pred cccHHHHHHHHhc--ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH----HHHhhhHH-HH
Confidence 8999999999984 44433 356666667899999999999999997764331 1111111111 11111111 23
Q ss_pred hcCCCCchhHHHH---HHHHHHhcCChHHHHHHHHHHHhcCC------CCCChh-------hHHHHHHHhhccchhhhHH
Q 038303 167 VKMPKRNVVSWTT---MIGGYAERGFCKEAVSVFQEMEKTKE------AEPNEA-------TLVNVLSACSSISALSFGK 230 (461)
Q Consensus 167 ~~~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~~~------~~~~~~-------~~~~~l~~~~~~~~~~~a~ 230 (461)
+........+|.. ....+...|++.+|+++++...+-+. ..-+.. .-.-+.-.+-..|+.++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 3333211222222 23344556666666666666521100 000000 1111222344456666666
Q ss_pred HHHHHHHhhcCCCCcch----HHHHHHHHH---------------------------------------------HhcCC
Q 038303 231 YVHSYISTRYDLSVSNL----VGNAVINMY---------------------------------------------VKCGD 261 (461)
Q Consensus 231 ~~~~~~~~~~~~~~~~~----~~~~li~~~---------------------------------------------~~~g~ 261 (461)
.++..+.+ ...+|.. ..|.|+..- .-.+.
T Consensus 245 ~iy~~~i~--~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk 322 (652)
T KOG2376|consen 245 SIYVDIIK--RNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNK 322 (652)
T ss_pred HHHHHHHH--hcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 66666555 1222211 112221110 01122
Q ss_pred HHHHHHHHHHccCC-ChhhHHHHHHHHH--hcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHH--
Q 038303 262 VGIAIQVFNMLAYK-DKISWSTVISGLA--MNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFK-- 336 (461)
Q Consensus 262 ~~~a~~~~~~~~~~-~~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~-- 336 (461)
.+.+.++-...... ....+.+++.... +...+.++.+++...-+....-....--..+......|+++.|.+++.
T Consensus 323 ~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 323 MDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 22222222222211 1233444444332 233466777777777664322223444455666788999999999998
Q ss_pred ------HhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-----CCCchhhHHHHH----HHHHHhcCChHHHHH
Q 038303 337 ------AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-----PIEAEWSVWGAL----LNACRIHRNDEMFDR 401 (461)
Q Consensus 337 ------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l----~~~~~~~~~~~~a~~ 401 (461)
.+.+ .+..| .+...+...+.+.++.+.|..++.+. ...+.......+ ...-.+.|+.++|..
T Consensus 403 ~~~~~ss~~~-~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 403 LESWKSSILE-AKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred hhhhhhhhhh-hccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 5544 34444 44566777788888877777766655 111222222232 233456799999999
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHH
Q 038303 402 IRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIR 437 (461)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 437 (461)
+++++.+.+|++..+...++.+|++. +.+.|..+-
T Consensus 480 ~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~ 514 (652)
T KOG2376|consen 480 LLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLS 514 (652)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHh
Confidence 99999999999999999999999887 566666554
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=2.1e-10 Score=95.22 Aligned_cols=284 Identities=12% Similarity=0.090 Sum_probs=182.0
Q ss_pred CCChHHHHHHHhcC-CCCC-CchhHHHHHHHhcccchhHHHHHHHHHHHhhc-CCCC--hhHHHHHHHHHHHcCChhhHH
Q 038303 89 CGFHKEAIDMFCGI-DVKP-NANTLVSVLSACSSLVSHKLGKAIHAHSLRNL-NENN--IILDNAILDFYIRCGSLASCG 163 (461)
Q Consensus 89 ~~~~~~a~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~ 163 (461)
+.+.++|.++|-+| ...| +..+-.+|.+.+.+.|..+.|.++++.+.++- .+-+ ......|..-|...|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 35677777777777 3333 23333455556666777777777777666541 1111 122334555666677777777
Q ss_pred HHHhcCCC-C--chhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhc
Q 038303 164 YLFVKMPK-R--NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240 (461)
Q Consensus 164 ~~~~~~~~-~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~ 240 (461)
.+|..+.+ + -......|+..|-...+|++|+++-+++.+.+ ..+...-.
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~-~q~~~~eI--------------------------- 179 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLG-GQTYRVEI--------------------------- 179 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC-CccchhHH---------------------------
Confidence 77766655 2 22345556666777777777777777666643 11111100
Q ss_pred CCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHH
Q 038303 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK---ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIA 317 (461)
Q Consensus 241 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 317 (461)
...|.-|...+....+++.|..++.+..+.|. ..--.+.+.....|++++|.+.++...+.+..--..+...
T Consensus 180 -----AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 180 -----AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred -----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 12345566666677888888888888775433 3344456778889999999999999998765555577888
Q ss_pred HHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHH-HhCCCCchhhHHHHHHHHHH---hc
Q 038303 318 LISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFI-REMPIEAEWSVWGALLNACR---IH 393 (461)
Q Consensus 318 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~---~~ 393 (461)
|..+|...|+.++...++..+.+ ..+....-..+.+.-....-.+.|..++ +.+..+|+...+..++..-. ..
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~---~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daee 331 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAME---TNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEE 331 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH---ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccc
Confidence 89999999999999999988877 2344444455555444444555565554 45577899999999998843 33
Q ss_pred CChHHHHHHHHHHhh
Q 038303 394 RNDEMFDRIRQDLVN 408 (461)
Q Consensus 394 ~~~~~a~~~~~~~~~ 408 (461)
|...+....++.|..
T Consensus 332 g~~k~sL~~lr~mvg 346 (389)
T COG2956 332 GRAKESLDLLRDMVG 346 (389)
T ss_pred cchhhhHHHHHHHHH
Confidence 446666666666664
No 58
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.41 E-value=3.2e-08 Score=89.89 Aligned_cols=422 Identities=11% Similarity=0.045 Sum_probs=260.5
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHh-CCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHcCCCh
Q 038303 14 TQALKACSLAHPHQKALEIHAHVIEY-GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFH 92 (461)
Q Consensus 14 ~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~ 92 (461)
-..+..+..+|++......|+..+.. .+.-....|...+......+-.+-+..++++..+-++..-+-.|..+++.+++
T Consensus 106 l~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~ 185 (835)
T KOG2047|consen 106 LDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRL 185 (835)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccch
Confidence 33445556677777788888777653 23333446777777777778888888888888777777788888889999999
Q ss_pred HHHHHHHhcC---------CCCCCchhHHHHHHHhcccchhH---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChh
Q 038303 93 KEAIDMFCGI---------DVKPNANTLVSVLSACSSLVSHK---LGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLA 160 (461)
Q Consensus 93 ~~a~~~~~~m---------~~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 160 (461)
++|-+.+... ..+.+...|.-+-+..++..+.- .+..++..+..+-...-...|++|.+.|.+.|.++
T Consensus 186 ~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~e 265 (835)
T KOG2047|consen 186 DEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFE 265 (835)
T ss_pred HHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhH
Confidence 9998888776 22233444555444444443322 23344444333322222467899999999999999
Q ss_pred hHHHHHhcCCC--CchhHHHHHHHHHHhc----------------CC------hHHHHHHHHHHHhcCCC----------
Q 038303 161 SCGYLFVKMPK--RNVVSWTTMIGGYAER----------------GF------CKEAVSVFQEMEKTKEA---------- 206 (461)
Q Consensus 161 ~a~~~~~~~~~--~~~~~~~~li~~~~~~----------------~~------~~~a~~~~~~m~~~~~~---------- 206 (461)
+|..+|++..+ ..+.-|+.+.++|+.- ++ ++-.+.-|+.+...+..
T Consensus 266 karDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn 345 (835)
T KOG2047|consen 266 KARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQN 345 (835)
T ss_pred HHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcC
Confidence 99999988765 2233333333333321 11 22233334443332211
Q ss_pred CCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCc------chHHHHHHHHHHhcCCHHHHHHHHHHccCCCh---
Q 038303 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS------NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK--- 277 (461)
Q Consensus 207 ~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--- 277 (461)
+.+..+|..-+ -...|+..+....+.++.+ .+.|. ...|..+...|-..|+++.|..+|++..+-+-
T Consensus 346 ~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~--~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v 421 (835)
T KOG2047|consen 346 PHNVEEWHKRV--KLYEGNAAEQINTYTEAVK--TVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTV 421 (835)
T ss_pred CccHHHHHhhh--hhhcCChHHHHHHHHHHHH--ccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccch
Confidence 11112222111 1224556666777777766 33333 23567888899999999999999999886543
Q ss_pred ----hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-----------------CHhHHHHHHHHHHcCCChHHHHHHHH
Q 038303 278 ----ISWSTVISGLAMNGCGRQALQLFSLMIINAVFP-----------------DDVTFIALISACSHGGLVDQGLILFK 336 (461)
Q Consensus 278 ----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-----------------~~~~~~~ll~~~~~~~~~~~a~~~~~ 336 (461)
.+|..-...-.++.+++.|+++++......-.| +...|...+..-...|-++....+++
T Consensus 422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 345555555567888999999888765421111 11234444555555688888899999
Q ss_pred HhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CC--Cchh-hHHHHHHHHHH---hcCChHHHHHHHHHHhhc
Q 038303 337 AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PI--EAEW-SVWGALLNACR---IHRNDEMFDRIRQDLVNK 409 (461)
Q Consensus 337 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--~p~~-~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~ 409 (461)
++..-.-..|... -...-.+-...-++++.+++++- +. .|++ ..|+..+.-+. .....+.|..+|+++.++
T Consensus 502 riidLriaTPqii--~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~ 579 (835)
T KOG2047|consen 502 RIIDLRIATPQII--INYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDG 579 (835)
T ss_pred HHHHHhcCCHHHH--HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 9887322334322 22222344566788999999887 22 2333 36666665543 345789999999999998
Q ss_pred CCCChh--HHHHHHHHHhccCChhhHHHHHHHHH
Q 038303 410 KGVSVG--TFALMSNTFAGADRWEDTNKIRDEIR 441 (461)
Q Consensus 410 ~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~ 441 (461)
.||... .|...+..--+.|....|+.++++..
T Consensus 580 Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 580 CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 876533 34444444456688888898888853
No 59
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.40 E-value=4.4e-09 Score=97.37 Aligned_cols=399 Identities=11% Similarity=-0.004 Sum_probs=267.2
Q ss_pred hCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCceeHHHHHHHHHcCCChHHHHHHHhcC-CCC--CCchh-H
Q 038303 39 YGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF---PDVVSWTTIISGLSKCGFHKEAIDMFCGI-DVK--PNANT-L 111 (461)
Q Consensus 39 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~--p~~~~-~ 111 (461)
..+..++..|..|.-++.+.|+++.+.+.|++..+ .....|+.+-..|...|.-..|+.+++.. ... |+..+ +
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 35667888999999999999999999999998743 34567888889999999999999999887 555 54343 3
Q ss_pred HHHHHHhc-ccchhHHHHHHHHHHHhh--cC--CCChhHHHHHHHHHHHc-----------CChhhHHHHHhcCCC---C
Q 038303 112 VSVLSACS-SLVSHKLGKAIHAHSLRN--LN--ENNIILDNAILDFYIRC-----------GSLASCGYLFVKMPK---R 172 (461)
Q Consensus 112 ~~ll~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~---~ 172 (461)
-..-..|. +.+..+++..+-.+++.. +. ......|..+.-+|... ....++.+.+++..+ .
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33334444 446777777777776662 11 12334444444444332 123456677777644 2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHH
Q 038303 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAV 252 (461)
Q Consensus 173 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 252 (461)
|..+.-.+.--|+..++.+.|.+...+..+.+ -..+...|..+.-.++..+++..|+.+.+......|..-.... .-
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~-~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~--~~ 553 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALN-RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD--GK 553 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch--hh
Confidence 33333334445778889999999999999876 6677888888888889999999999998888774444222111 11
Q ss_pred HHHHHhcCCHHHHHHHHHHccC------------------------------C--ChhhHHHHHHHHHhcCChHHHHHHH
Q 038303 253 INMYVKCGDVGIAIQVFNMLAY------------------------------K--DKISWSTVISGLAMNGCGRQALQLF 300 (461)
Q Consensus 253 i~~~~~~g~~~~a~~~~~~~~~------------------------------~--~~~~~~~l~~~~~~~~~~~~a~~~~ 300 (461)
+..-...++.+++......+.. + .+.++..+..-....+ ..+..-.
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~ 631 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSEL 631 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhccccc
Confidence 1122234555555443322210 0 1122222222111110 0000000
Q ss_pred HHHHhcCCCCCH--------hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHH
Q 038303 301 SLMIINAVFPDD--------VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIR 372 (461)
Q Consensus 301 ~~m~~~g~~p~~--------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 372 (461)
. +...-+.|+. ..+......+.+.++.++|...+.+... -.+-....|......+...|.+++|.+.|.
T Consensus 632 ~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 632 K-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred c-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 0 2222222222 2344555667888999999988888876 445566777777788889999999999998
Q ss_pred hC-CCCch-hhHHHHHHHHHHhcCChHHHHH--HHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcCC
Q 038303 373 EM-PIEAE-WSVWGALLNACRIHRNDEMFDR--IRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445 (461)
Q Consensus 373 ~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 445 (461)
.. .+.|+ +.+..++...+.+.|+..-|.. ++..+.+.+|.++.+|..++..+.+.|+.++|.+.|+...+...
T Consensus 709 ~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 709 VALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 87 55564 5577888888999999888888 99999999999999999999999999999999999999877543
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.39 E-value=1.4e-12 Score=80.29 Aligned_cols=50 Identities=32% Similarity=0.466 Sum_probs=40.6
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHc
Q 038303 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324 (461)
Q Consensus 275 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 324 (461)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56778888888888888888888888888888888888888888888764
No 61
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=1.8e-09 Score=94.72 Aligned_cols=339 Identities=11% Similarity=-0.014 Sum_probs=218.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHhcC-CCCCC-chhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHc
Q 038303 79 WTTIISGLSKCGFHKEAIDMFCGI-DVKPN-ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRC 156 (461)
Q Consensus 79 ~~~li~~~~~~~~~~~a~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (461)
+-...+-|.++|++++|+++|.+. ...|| +..|.....+|...|+|+++.+.-...++..+. -+..+..-.+++-..
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHEQL 196 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHHhh
Confidence 344567788999999999999999 88898 777888888899999999999988888776544 344556667788888
Q ss_pred CChhhHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHH--------H-HHhc-CCCCCChhhHHHHHHHhhccchh
Q 038303 157 GSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQ--------E-MEKT-KEAEPNEATLVNVLSACSSISAL 226 (461)
Q Consensus 157 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~--------~-m~~~-~~~~~~~~~~~~~l~~~~~~~~~ 226 (461)
|++++|+.-. |-.++...+....-.--+.++++ + +.+. ..+-|+.....+....+...-..
T Consensus 197 g~~~eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~ 267 (606)
T KOG0547|consen 197 GKFDEALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP 267 (606)
T ss_pred ccHHHHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc
Confidence 8888876521 22222222222222222222222 1 2211 11334444444444333211000
Q ss_pred hhHHHHHHHHHhhcCCCCcchHHHHHHHHH----Hh-cCCHHHHHHHHHHcc-------CC---Chh------hHHHHHH
Q 038303 227 SFGKYVHSYISTRYDLSVSNLVGNAVINMY----VK-CGDVGIAIQVFNMLA-------YK---DKI------SWSTVIS 285 (461)
Q Consensus 227 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~----~~-~g~~~~a~~~~~~~~-------~~---~~~------~~~~l~~ 285 (461)
....+.......+..++ .. ...+..|...+.+-. .. |.. +......
T Consensus 268 -------------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gt 334 (606)
T KOG0547|consen 268 -------------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGT 334 (606)
T ss_pred -------------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhh
Confidence 00000111111111111 11 012333433332211 11 111 1111122
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHH
Q 038303 286 GLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365 (461)
Q Consensus 286 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 365 (461)
.+.-.|+.-.|.+-|+..+.....++. .|-.+...|....+.++..+.|++... --+-++.+|..-.+.+.-.++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~--ldp~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAED--LDPENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHh--cCCCCCchhHhHHHHHHHHHHHH
Confidence 234468888999999999886544333 277777789999999999999999877 23446778888888888899999
Q ss_pred HHHHHHHhC-CCCchh-hHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 038303 366 EAEAFIREM-PIEAEW-SVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 366 ~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 443 (461)
+|..-|++. .+.|.. ..|..+-.+..+.+.+++++..|++.++..|..+..|+..+.++...++++.|.+.++...+.
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 999999998 555643 345555555668889999999999999999999999999999999999999999999998764
No 62
>PF13041 PPR_2: PPR repeat family
Probab=99.37 E-value=1.7e-12 Score=79.83 Aligned_cols=50 Identities=16% Similarity=0.188 Sum_probs=48.7
Q ss_pred CCcchHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHh
Q 038303 8 YNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVT 57 (461)
Q Consensus 8 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 57 (461)
||..+||.+|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999975
No 63
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=1.9e-08 Score=84.91 Aligned_cols=179 Identities=9% Similarity=0.022 Sum_probs=114.4
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhC---CCCCceeHHHHHHHHHcCCChH
Q 038303 17 LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV---VFPDVVSWTTIISGLSKCGFHK 93 (461)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~~~~~ 93 (461)
+.-+...+++..|..+++.-...+-+-...+-.-+...+.+.|++++|...+..+ ..++...+-.|.-++.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 4556677888999998887765443322222223445667889999999999877 2355566666666666778888
Q ss_pred HHHHHHhcCCCCCCchhHH-HHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCC-
Q 038303 94 EAIDMFCGIDVKPNANTLV-SVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK- 171 (461)
Q Consensus 94 ~a~~~~~~m~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 171 (461)
+|..+-... |+..... .+....-+.++-++-..+.+.+... ..---+|.......-.+++|++++.++..
T Consensus 109 eA~~~~~ka---~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 109 EAKSIAEKA---PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHhhC---CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888887654 4444433 3444455667766666666555432 12234455555556678899999988875
Q ss_pred -CchhHHHH-HHHHHHhcCChHHHHHHHHHHHhc
Q 038303 172 -RNVVSWTT-MIGGYAERGFCKEAVSVFQEMEKT 203 (461)
Q Consensus 172 -~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~ 203 (461)
|+-...|. +.-+|.+..-++-+.++++--.+.
T Consensus 181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 44444443 334667777777777777776663
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.5e-09 Score=94.60 Aligned_cols=409 Identities=11% Similarity=-0.003 Sum_probs=268.9
Q ss_pred CcchHHHHHHHHHhhCCHHHHHHHHHHH----HHhCC---------CccHHH----HHHH-------HHHHHhcCCHHHH
Q 038303 9 NHYTFTQALKACSLAHPHQKALEIHAHV----IEYGH---------LHDIFI----QNSL-------LHFYVTVKDIFSA 64 (461)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~---------~~~~~~----~~~l-------l~~~~~~~~~~~a 64 (461)
|..+.......+.+..++++|..++... ..... .++..- -+.- -..|....++++|
T Consensus 81 d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~a 160 (611)
T KOG1173|consen 81 DIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEA 160 (611)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHH
Confidence 4455666677788888889988888722 11100 011000 0000 1233344567777
Q ss_pred HHHHhhCCCCCceeHHHHHHHHHcC-CChHHHHHHHhcCCCC----CCchhHHHHHHHh-cccchhHHHHHHHHHHHhhc
Q 038303 65 HQIFNSVVFPDVVSWTTIISGLSKC-GFHKEAIDMFCGIDVK----PNANTLVSVLSAC-SSLVSHKLGKAIHAHSLRNL 138 (461)
Q Consensus 65 ~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~----p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~ 138 (461)
...|.+....|+..|..+....... -...+-..+|+.+... -+......+.... ++..+ +.....-....-.+
T Consensus 161 r~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n-~~~~~r~~~~sl~~ 239 (611)
T KOG1173|consen 161 RDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRN-EESLTRNEDESLIG 239 (611)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcc-ccccccCchhhhhh
Confidence 7777777666666665544322211 1122334444433111 1111111111111 00000 00000000011112
Q ss_pred CCCChhHHHHHHHHHHHcCChhhHHHHHhcCCC---CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHH
Q 038303 139 NENNIILDNAILDFYIRCGSLASCGYLFVKMPK---RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVN 215 (461)
Q Consensus 139 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 215 (461)
..-+........+-+...+++.+..++++...+ +....+..-|.++...|+..+-..+=.++.+. .|-.+.+|-.
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhh
Confidence 334566666777788889999999999998876 45566777788999999999999999999986 6777889999
Q ss_pred HHHHhhccchhhhHHHHHHHHHhhcCCCCc-chHHHHHHHHHHhcCCHHHHHHHHHHccCC---ChhhHHHHHHHHHhcC
Q 038303 216 VLSACSSISALSFGKYVHSYISTRYDLSVS-NLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DKISWSTVISGLAMNG 291 (461)
Q Consensus 216 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~ 291 (461)
+.-.|...|..++|++.|.+... +.|. ...|-.+...|.-.|..++|...+....+- ....+--+.--|.+.+
T Consensus 318 Vg~YYl~i~k~seARry~SKat~---lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATT---LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhh---cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhc
Confidence 99999999999999999998854 3333 346788889999999999999888665431 2222233344577789
Q ss_pred ChHHHHHHHHHHHhcCCCC-CHhHHHHHHHHHHcCCChHHHHHHHHHhHhhc-CCCC----CcchHHHHHHHHhhcCCHH
Q 038303 292 CGRQALQLFSLMIINAVFP-DDVTFIALISACSHGGLVDQGLILFKAMSTVY-EIVP----QMQHYACVVDMYGRAGLLE 365 (461)
Q Consensus 292 ~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~ 365 (461)
++..|.+.|.+.... -| |+...+-+.-.....+.+.+|..+|+...... ...+ -..+++.|..+|.+.++++
T Consensus 395 n~kLAe~Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred cHHHHHHHHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 999999999988774 44 45666666655667899999999998876311 1111 2345788899999999999
Q ss_pred HHHHHHHhC--CCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHh
Q 038303 366 EAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425 (461)
Q Consensus 366 ~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (461)
+|+..+++. ..+.+..++.++.-.|...|+++.|++.|.+.....|.+..+-..|..+..
T Consensus 473 eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 473 EAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 999999998 445577788888888999999999999999999999999766666555443
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.35 E-value=5.3e-10 Score=107.21 Aligned_cols=260 Identities=11% Similarity=-0.024 Sum_probs=178.2
Q ss_pred chhHHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCCCC-hhhHHHHHHHhh---------ccchhhhHHHHHHHHH
Q 038303 173 NVVSWTTMIGGYAE-----RGFCKEAVSVFQEMEKTKEAEPN-EATLVNVLSACS---------SISALSFGKYVHSYIS 237 (461)
Q Consensus 173 ~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~~l~~~~---------~~~~~~~a~~~~~~~~ 237 (461)
+...|...+.+... .++.++|..+|++..+ ..|+ ...+..+..++. ..++.++|...++...
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~---ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVN---MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 44555555555322 2346799999999988 4454 444544443332 3355788999999887
Q ss_pred hhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-h
Q 038303 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY--K-DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD-V 313 (461)
Q Consensus 238 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~ 313 (461)
+ -.+.+...+..+...+...|++++|...|++..+ | +...|..+...+...|++++|...+++..+.. |+. .
T Consensus 332 ~--ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~ 407 (553)
T PRK12370 332 E--LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAA 407 (553)
T ss_pred h--cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChh
Confidence 7 2334556777888888999999999999998774 3 45678888899999999999999999998854 443 2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCchhhHHHH-HHHHH
Q 038303 314 TFIALISACSHGGLVDQGLILFKAMSTVYEIVP-QMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGA-LLNAC 390 (461)
Q Consensus 314 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~-l~~~~ 390 (461)
.+..++..+...|++++|...++++.. . .+| ++..+..+..++...|+.++|...++++ ...|+...... +...+
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~-~-~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRS-Q-HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHH-h-ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 333444456668999999999998876 2 234 4455677888889999999999999988 44555444433 44446
Q ss_pred HhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcC
Q 038303 391 RIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444 (461)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 444 (461)
...| +.|...++.+.+.....+.-.......|.-.|+.+.+..+ +++.+.|
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 6666 4777777777763221111222255566667777777666 7776654
No 66
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.34 E-value=4e-10 Score=105.47 Aligned_cols=243 Identities=11% Similarity=-0.019 Sum_probs=141.0
Q ss_pred CCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCCCchhHHHHHHH
Q 038303 103 DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIG 182 (461)
Q Consensus 103 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~ 182 (461)
|+.|+..||..+|.-|+..|+.+.|- +|..|.-...+.+...++.++.++...++.+.+. .|...+|..|..
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ 91 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLK 91 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHH
Confidence 78888888888888888888888887 8888877777777888888888888777776555 577788888888
Q ss_pred HHHhcCChHHHHHHHHH-HH-------hcCCCCCChhhHHHHHHH--------------hhccchhhhHHHHHHHHHhhc
Q 038303 183 GYAERGFCKEAVSVFQE-ME-------KTKEAEPNEATLVNVLSA--------------CSSISALSFGKYVHSYISTRY 240 (461)
Q Consensus 183 ~~~~~~~~~~a~~~~~~-m~-------~~~~~~~~~~~~~~~l~~--------------~~~~~~~~~a~~~~~~~~~~~ 240 (461)
+|...||... ++..++ |. ..| +.....-+-..+.+ ..-.|.++.+.+++..+....
T Consensus 92 ayr~hGDli~-fe~veqdLe~i~~sfs~~G-vgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 92 AYRIHGDLIL-FEVVEQDLESINQSFSDHG-VGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHhccchHH-HHHHHHHHHHHHhhhhhhc-cCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 8888887654 222222 11 111 11111111111111 111222333333322221101
Q ss_pred CCCCcchHHHHHHHHHHh-cCCHHHHHHHHHHccC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHH
Q 038303 241 DLSVSNLVGNAVINMYVK-CGDVGIAIQVFNMLAY-KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIAL 318 (461)
Q Consensus 241 ~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 318 (461)
...|... +++-... ...+++-...-....+ ++..+|.+++..-...|+.+.|..++.+|.+.|++.+.+-|-.|
T Consensus 170 ~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpL 245 (1088)
T KOG4318|consen 170 WNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPL 245 (1088)
T ss_pred ccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhh
Confidence 1111111 1111111 1122333333333333 57777777777777777777777777777777777777666666
Q ss_pred HHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCC
Q 038303 319 ISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363 (461)
Q Consensus 319 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 363 (461)
+-+ .++...++.+++.|.. .|+.|+..|+...+..+...|.
T Consensus 246 l~g---~~~~q~~e~vlrgmqe-~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 246 LLG---INAAQVFEFVLRGMQE-KGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhc---CccchHHHHHHHHHHH-hcCCCCcchhHHHHHhhhcchh
Confidence 544 6677777777777776 6777777777766666655443
No 67
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=7.3e-09 Score=85.24 Aligned_cols=423 Identities=10% Similarity=0.032 Sum_probs=255.4
Q ss_pred CCCCCCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCcee
Q 038303 1 MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV--FPDVVS 78 (461)
Q Consensus 1 M~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~ 78 (461)
|...|+....--+++++..+.+..++.+|.+++..-.+...+ +....+.|-..|.+..++..|...++++. .|...-
T Consensus 1 M~~~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~q 79 (459)
T KOG4340|consen 1 MAGSGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQ 79 (459)
T ss_pred CCcccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHH
Confidence 566777777777899999999999999999999988776632 66677778888889999999999999983 354444
Q ss_pred HHHH-HHHHHcCCChHHHHHHHhcCCCCCCchhHHHHHHH--hcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 038303 79 WTTI-ISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSA--CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIR 155 (461)
Q Consensus 79 ~~~l-i~~~~~~~~~~~a~~~~~~m~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 155 (461)
|... ...+-+.+.+..|+++...|+-.|+...-..-+.+ ....+|+..+..++++....| +..+.+...-...+
T Consensus 80 YrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 80 YRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYK 156 (459)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeec
Confidence 4432 35667788999999999988544544433333333 345678888888777765432 34444444555668
Q ss_pred cCChhhHHHHHhcCCC----CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHH
Q 038303 156 CGSLASCGYLFVKMPK----RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKY 231 (461)
Q Consensus 156 ~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~ 231 (461)
.|+++.|.+-|+...+ .....||.-+ ++.+.|+++.|+++..++++.| ++..+..-..+..--.....+.....
T Consensus 157 egqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG-~r~HPElgIGm~tegiDvrsvgNt~~ 234 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERG-IRQHPELGIGMTTEGIDVRSVGNTLV 234 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhh-hhcCCccCccceeccCchhcccchHH
Confidence 8999999999988876 3455666554 4556788999999999988887 54332211000000000000000000
Q ss_pred HHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 038303 232 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-----DKISWSTVISGLAMNGCGRQALQLFSLMIIN 306 (461)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 306 (461)
+.... -...+|.-...+.+.|+.+.|.+.+-.|..+ |++|...+.-. -..+++.+..+-+.-+.+.
T Consensus 235 lh~Sa--------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~ 305 (459)
T KOG4340|consen 235 LHQSA--------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQ 305 (459)
T ss_pred HHHHH--------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhc
Confidence 10000 0112333344567889999999999999843 66666554322 2245566666666666665
Q ss_pred CCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHh-hcCCHHHHHHHHHhCCCCchhhHHHH
Q 038303 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG-RAGLLEEAEAFIREMPIEAEWSVWGA 385 (461)
Q Consensus 307 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~p~~~~~~~ 385 (461)
.. -...||..++-.||+..-++.|-.++.+-....-.-.+...|+ |++++. ..-..++|.+-++.+...-....-..
T Consensus 306 nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRkl 383 (459)
T KOG4340|consen 306 NP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKL 383 (459)
T ss_pred CC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 3458999999999999999999988865433111112334444 334433 34466777766655511111111111
Q ss_pred HHHH--HHhcCChHHH---HHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 038303 386 LLNA--CRIHRNDEMF---DRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 386 l~~~--~~~~~~~~~a---~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 443 (461)
.+.. -...++-.+. +.-+++..+. -..+...-++.|.+..++..+.++|..-.+-
T Consensus 384 Ai~vQe~r~~~dd~a~R~ai~~Yd~~LE~---YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 384 AIQVQEARHNRDDEAIRKAVNEYDETLEK---YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 1111 1122222222 2222222222 1234556667788889999999999876553
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.32 E-value=6e-10 Score=95.11 Aligned_cols=124 Identities=10% Similarity=0.005 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHccCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 038303 248 VGNAVINMYVKCGDVGIAIQVFNMLAYK-----DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322 (461)
Q Consensus 248 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 322 (461)
.+..+...+...|++++|.+.++..... ....+..+...+...|++++|...+++..+... .+...+..+...+
T Consensus 101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 179 (234)
T TIGR02521 101 VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELY 179 (234)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHH
Confidence 3344444555555555555555554321 223444455556666666666666666655321 1334555556666
Q ss_pred HcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 038303 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 323 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
...|++++|...+++.... .+.+...+..+...+...|+.++|..+.+.+
T Consensus 180 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 180 YLRGQYKDARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6666666666666666552 2334445555556666666666666665544
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=2.9e-10 Score=94.46 Aligned_cols=229 Identities=11% Similarity=0.039 Sum_probs=149.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHH
Q 038303 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYV 257 (461)
Q Consensus 178 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 257 (461)
+.+..+|.+.|.+.+|.+.++...+ ..|-..||..+-.+|.+..++..|..++.+-.+ ..+-+.....-..+.+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~---q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT---QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh---cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHH
Confidence 5678889999999999999988877 567777888888888888888888887777655 33333333344555666
Q ss_pred hcCCHHHHHHHHHHccCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHH
Q 038303 258 KCGDVGIAIQVFNMLAYK---DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334 (461)
Q Consensus 258 ~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 334 (461)
..++.++|.++++...+. |+....++...|.-.++++-|+..|+++.+.|+. +...|..+.-+|.-.++++-++.-
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 666666666666665532 4444455555566666666666666666666654 555666666666666666665555
Q ss_pred HHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCh
Q 038303 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414 (461)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 414 (461)
|.+... . .-+.++|.+ .|..+.......||+..|.+.|+.....++.+.
T Consensus 381 f~RAls-t------------------at~~~~aaD------------vWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 381 FQRALS-T------------------ATQPGQAAD------------VWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred HHHHHh-h------------------ccCcchhhh------------hhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 554443 1 111122222 233333444556777777777777777777777
Q ss_pred hHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 038303 415 GTFALMSNTFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 443 (461)
..++.|+-.-.+.|++++|..+++.....
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 78888887777888888888887776554
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2e-07 Score=80.45 Aligned_cols=306 Identities=8% Similarity=-0.053 Sum_probs=163.7
Q ss_pred CCchhHHHHHHHhc--ccchhHHHHHHHHHHHhh-cCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCCCchhHHHH---
Q 038303 106 PNANTLVSVLSACS--SLVSHKLGKAIHAHSLRN-LNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTT--- 179 (461)
Q Consensus 106 p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--- 179 (461)
|...+....+.+++ -.++...+...+-.+... -++.|......+.+.+...|+.++|+..|++....|..+...
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~ 271 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDL 271 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHH
Confidence 33344444444432 223333333333333222 244466666777777777777777777777665433332211
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhc
Q 038303 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKC 259 (461)
Q Consensus 180 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 259 (461)
....+...|+.++...+...+... ..-....|..-....-...+++.|..+-++..+ -.+-+...+-.-...+...
T Consensus 272 Ya~LL~~eg~~e~~~~L~~~Lf~~--~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~--~~~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 272 YAVLLGQEGGCEQDSALMDYLFAK--VKYTASHWFVHAQLLYDEKKFERALNFVEKCID--SEPRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHhccCHhhHHHHHHHHHhh--hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc--cCcccchHHHhccHHHHhc
Confidence 122345566666666666665442 112222222222223334455555555554433 1111222232233455566
Q ss_pred CCHHHHHHHHHHcc--CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHH-HHH-HcCCChHHHHHH
Q 038303 260 GDVGIAIQVFNMLA--YK-DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALI-SAC-SHGGLVDQGLIL 334 (461)
Q Consensus 260 g~~~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~-~~~~~~~~a~~~ 334 (461)
+++++|.-.|.... .| +..+|.-|+.+|...|++.+|...-++..+. +..+..+...+. ..| ....--++|.++
T Consensus 348 ~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 77777777776544 32 5667777777777777777766655554432 223444444332 222 223334566666
Q ss_pred HHHhHhhcCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 038303 335 FKAMSTVYEIVPQ-MQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412 (461)
Q Consensus 335 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 412 (461)
+++..+ +.|+ ....+.+.+.+...|+.+++..++++. ...||....+.|...+...+.+.+|.+.|..+.+.+|.
T Consensus 427 ~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 427 AEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 665544 3333 334455666667777777777777766 55677777777777777777777777777777777776
Q ss_pred ChhHHHH
Q 038303 413 SVGTFAL 419 (461)
Q Consensus 413 ~~~~~~~ 419 (461)
+..+...
T Consensus 504 ~~~sl~G 510 (564)
T KOG1174|consen 504 SKRTLRG 510 (564)
T ss_pred chHHHHH
Confidence 6544433
No 71
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.28 E-value=1.6e-07 Score=87.38 Aligned_cols=411 Identities=10% Similarity=0.025 Sum_probs=256.2
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCce-eHHHHHHHHHcC----
Q 038303 17 LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--PDVV-SWTTIISGLSKC---- 89 (461)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~li~~~~~~---- 89 (461)
...+...|++++|++.++.-... +.............+.+.|+.++|..+|..++. |+-. -|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc
Confidence 35578899999999999875543 434566677778899999999999999999954 3333 344455554222
Q ss_pred -CChHHHHHHHhcC-CCCCCchhHHHHHHHhcccch-hHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHH
Q 038303 90 -GFHKEAIDMFCGI-DVKPNANTLVSVLSACSSLVS-HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLF 166 (461)
Q Consensus 90 -~~~~~a~~~~~~m-~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 166 (461)
...+...++|+++ ...|.......+.-.+..... -..+..++..++..|++ .+++.+-..|....+.+-...++
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHH
Confidence 3567788888888 555766555444333333223 34566777777888765 34445555555444444444444
Q ss_pred hcCC------------------CCchh--HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchh
Q 038303 167 VKMP------------------KRNVV--SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 226 (461)
Q Consensus 167 ~~~~------------------~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~ 226 (461)
.... .|... ++..+...|...|++++|++++++.++. .|.....|..-...+-+.|++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCH
Confidence 3321 13333 4466678888999999999999999995 344467788888899999999
Q ss_pred hhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCChh----------hH--HHHHHHHHhcCChH
Q 038303 227 SFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI----------SW--STVISGLAMNGCGR 294 (461)
Q Consensus 227 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----------~~--~~l~~~~~~~~~~~ 294 (461)
.+|....+.... -...|..+-+..+..+.+.|++++|.+++....+++.. .| .....+|.+.|++.
T Consensus 245 ~~Aa~~~~~Ar~--LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 245 KEAAEAMDEARE--LDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHh--CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999877 34456667777888999999999999999988866421 12 33467889999999
Q ss_pred HHHHHHHHHHhc--CC---CCCHh----------HHHHHHHHHHcCCC-------hHHHHHHHHHhHhhcCCCCCc----
Q 038303 295 QALQLFSLMIIN--AV---FPDDV----------TFIALISACSHGGL-------VDQGLILFKAMSTVYEIVPQM---- 348 (461)
Q Consensus 295 ~a~~~~~~m~~~--g~---~p~~~----------~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~---- 348 (461)
.|++-|....+. .+ +-|.+ +|..+++..-+... ...|.+++-.+..........
T Consensus 323 ~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~ 402 (517)
T PF12569_consen 323 LALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEA 402 (517)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCccccccccccc
Confidence 988877665432 01 12323 33334433222111 223444444443311000000
Q ss_pred -------chHHHHHHHH---hhcCCHHHHHHHHH-----------hC------CCCchhhHHHHHHHHHHhcCChHHHHH
Q 038303 349 -------QHYACVVDMY---GRAGLLEEAEAFIR-----------EM------PIEAEWSVWGALLNACRIHRNDEMFDR 401 (461)
Q Consensus 349 -------~~~~~l~~~~---~~~g~~~~A~~~~~-----------~~------~~~p~~~~~~~l~~~~~~~~~~~~a~~ 401 (461)
.--..+..-. .+...-+++...-. .. +..||+.- ..| .....-.++|.+
T Consensus 403 ~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G-ekL---~~t~dPLe~A~k 478 (517)
T PF12569_consen 403 DNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG-EKL---LKTEDPLEEAMK 478 (517)
T ss_pred ccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccH-HHH---hcCCcHHHHHHH
Confidence 0000111100 11111111111110 00 11122211 111 123446788999
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHH
Q 038303 402 IRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDE 439 (461)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 439 (461)
+++-+.+..|.+..+|..-...|.+.|++--|++.+.+
T Consensus 479 fl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 479 FLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 99999999999999999999999999999999888764
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.24 E-value=2e-09 Score=103.22 Aligned_cols=256 Identities=14% Similarity=-0.010 Sum_probs=170.0
Q ss_pred ChhHHHHHHHHHHH-----cCChhhHHHHHhcCCC--C-chhHHHHHHHHHH---------hcCChHHHHHHHHHHHhcC
Q 038303 142 NIILDNAILDFYIR-----CGSLASCGYLFVKMPK--R-NVVSWTTMIGGYA---------ERGFCKEAVSVFQEMEKTK 204 (461)
Q Consensus 142 ~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~---------~~~~~~~a~~~~~~m~~~~ 204 (461)
+...|...+.+-.. .+++++|..+|++..+ | +...|..+..++. ..+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l- 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL- 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc-
Confidence 34444455554322 2345788888888775 3 3345555554443 234578999999998885
Q ss_pred CCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCCh---hhHH
Q 038303 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK---ISWS 281 (461)
Q Consensus 205 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~ 281 (461)
.+.+...+..+...+...|++++|...++...+ -.+.+...+..+...+...|++++|...+++..+-++ ..+.
T Consensus 334 -dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~ 410 (553)
T PRK12370 334 -DHNNPQALGLLGLINTIHSEYIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGI 410 (553)
T ss_pred -CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHH
Confidence 344566777777778888999999999999877 2233455677888899999999999999998874322 2334
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhh
Q 038303 282 TVISGLAMNGCGRQALQLFSLMIINAVFPD-DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360 (461)
Q Consensus 282 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 360 (461)
.++..+...|++++|...+++..+.. .|+ ...+..+..++...|++++|...++++.. ..+.+....+.+...|..
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhHHHHHHHHHHHhc
Confidence 44555677899999999999987653 243 44566677788889999999999988765 222334444556666677
Q ss_pred cCCHHHHHHHHHhC----CCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 038303 361 AGLLEEAEAFIREM----PIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNK 409 (461)
Q Consensus 361 ~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 409 (461)
.| ++|...++.+ ...|...-+ +-..+.-.|+.+.+... +++.+.
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 77 4777766666 222333333 22335556677766666 666553
No 73
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.22 E-value=1.2e-06 Score=79.96 Aligned_cols=352 Identities=11% Similarity=0.089 Sum_probs=196.1
Q ss_pred chHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCC----------CceeHH
Q 038303 11 YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP----------DVVSWT 80 (461)
Q Consensus 11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~ 80 (461)
..|...+......|-++-+..+++..++. ++..-.--+..+++.+++++|.+.+...... +-..|.
T Consensus 139 rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~ 214 (835)
T KOG2047|consen 139 RIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL 214 (835)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH
Confidence 44666677777778888888888888774 3334566678888999999999999877432 233455
Q ss_pred HHHHHHHcCCChH---HHHHHHhcC-CCCCCc--hhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 038303 81 TIISGLSKCGFHK---EAIDMFCGI-DVKPNA--NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154 (461)
Q Consensus 81 ~li~~~~~~~~~~---~a~~~~~~m-~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 154 (461)
-+-+..+++.+.- ..-.++..+ +.-+|. ..|.+|.+-|.+.|.++.|..++++....-. +..-+..+.++|+
T Consensus 215 elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 215 ELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYA 292 (835)
T ss_pred HHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHH
Confidence 5555554443322 223444444 445553 3567788888888888888888888776532 2222333333333
Q ss_pred HcCC----------------------hhhHHHHHhcCCC---------------CchhHHHHHHHHHHhcCChHHHHHHH
Q 038303 155 RCGS----------------------LASCGYLFVKMPK---------------RNVVSWTTMIGGYAERGFCKEAVSVF 197 (461)
Q Consensus 155 ~~g~----------------------~~~a~~~~~~~~~---------------~~~~~~~~li~~~~~~~~~~~a~~~~ 197 (461)
.... ++-....|+.+.. .++..|..-. -+..|+..+-...|
T Consensus 293 ~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~ty 370 (835)
T KOG2047|consen 293 QFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTY 370 (835)
T ss_pred HHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHH
Confidence 2211 1112222222221 1222232222 22346677777777
Q ss_pred HHHHhcCCCCCCh------hhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCc---chHHHHHHHHHHhcCCHHHHHHH
Q 038303 198 QEMEKTKEAEPNE------ATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS---NLVGNAVINMYVKCGDVGIAIQV 268 (461)
Q Consensus 198 ~~m~~~~~~~~~~------~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~ 268 (461)
.+..+. +.|.. ..|..+..-|-..|+++.|..+|+...+ ...+.- ..+|..-...-.+..+++.|.++
T Consensus 371 teAv~~--vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~-V~y~~v~dLa~vw~~waemElrh~~~~~Al~l 447 (835)
T KOG2047|consen 371 TEAVKT--VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK-VPYKTVEDLAEVWCAWAEMELRHENFEAALKL 447 (835)
T ss_pred HHHHHc--cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc-CCccchHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 777765 44432 2466667777888888888888888766 333222 33455555555667778888887
Q ss_pred HHHccC-C--------------------ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCC
Q 038303 269 FNMLAY-K--------------------DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327 (461)
Q Consensus 269 ~~~~~~-~--------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 327 (461)
.+.... | +...|...++..-..|-++....+|+++.+..+. ++.........+....-
T Consensus 448 m~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~y 526 (835)
T KOG2047|consen 448 MRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKY 526 (835)
T ss_pred HHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHH
Confidence 776541 1 2234555555555566777777777777665443 22222222222333444
Q ss_pred hHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhh---cCCHHHHHHHHHhC
Q 038303 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR---AGLLEEAEAFIREM 374 (461)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~ 374 (461)
++++.+++++-...+..+.-...|+..+.-+.+ ..+++.|..+|++.
T Consensus 527 feesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 527 FEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 555555555444422222223444444433332 12455566666555
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.22 E-value=5.4e-08 Score=90.48 Aligned_cols=125 Identities=12% Similarity=-0.006 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHccCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHc
Q 038303 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKD---KISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324 (461)
Q Consensus 248 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 324 (461)
++.-+...|-..|++++|.+++++..+.+ +..|..-...+-+.|++.+|.+.++........ |...-+.....+.+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHH
Confidence 34556777888899999999998877543 456777888888999999999999988876543 66666677778888
Q ss_pred CCChHHHHHHHHHhHhhcCCCCCcchH--------HHHHHHHhhcCCHHHHHHHHHhC
Q 038303 325 GGLVDQGLILFKAMSTVYEIVPQMQHY--------ACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 325 ~~~~~~a~~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
.|++++|.+++....+ .+..|....+ .....+|.+.|++..|++.|...
T Consensus 275 a~~~e~A~~~~~~Ftr-~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTR-EDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred CCCHHHHHHHHHhhcC-CCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999888877 4433433222 34467788888888888766554
No 75
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.20 E-value=7.6e-07 Score=81.39 Aligned_cols=412 Identities=13% Similarity=0.030 Sum_probs=256.7
Q ss_pred HHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhC---CCCCceeHHHHHHHHHcCCChHHH
Q 038303 19 ACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV---VFPDVVSWTTIISGLSKCGFHKEA 95 (461)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a 95 (461)
.+...|+-++|........+..+. +.+.|+.+--.+....++++|++.|... .+.|...|..+--.=+..|+++..
T Consensus 50 ~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhH
Confidence 355678889999999888886654 7778887777777789999999999887 334556666655555666777777
Q ss_pred HHHHhcC-CCCCC-chhHHHHHHHhcccchhHHHHHHHHHHHhhcC-CCChhHHHHH------HHHHHHcCChhhHHHHH
Q 038303 96 IDMFCGI-DVKPN-ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLN-ENNIILDNAI------LDFYIRCGSLASCGYLF 166 (461)
Q Consensus 96 ~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l------~~~~~~~g~~~~a~~~~ 166 (461)
...-.+. ...|+ ...|.....+..-.|+...|..+.++..+... .|+...+... .....+.|..++|.+.+
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 7666666 55664 45677788888889999999999999987753 4555554322 23456788899999888
Q ss_pred hcCCC--CchhH-HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhh--ccchhhhHHHHHHHHHhhcC
Q 038303 167 VKMPK--RNVVS-WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS--SISALSFGKYVHSYISTRYD 241 (461)
Q Consensus 167 ~~~~~--~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~--~~~~~~~a~~~~~~~~~~~~ 241 (461)
..... -|... -..-...+.+.++.++|..++..+... .||...|...+..+. -.+..+....+|....+.
T Consensus 209 ~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r---nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-- 283 (700)
T KOG1156|consen 209 LDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER---NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-- 283 (700)
T ss_pred HhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh---CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--
Confidence 87765 22222 234456688999999999999999984 466666655554443 233344444666665441
Q ss_pred CCCcchHHHHHHHHHHhcCCH-HHHHHHHHHccCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHh----cC--------
Q 038303 242 LSVSNLVGNAVINMYVKCGDV-GIAIQVFNMLAYKD-KISWSTVISGLAMNGCGRQALQLFSLMII----NA-------- 307 (461)
Q Consensus 242 ~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~g-------- 307 (461)
.|....-..+-.......++ +....++....+.. +.++..+...+-.-...+-..++.-.+.. .|
T Consensus 284 -y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~ 362 (700)
T KOG1156|consen 284 -YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDG 362 (700)
T ss_pred -CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccccc
Confidence 11111001111111111222 22333333333332 33444444444332222211122222111 11
Q ss_pred --CCCCH--hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhC-C-CCchh
Q 038303 308 --VFPDD--VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ-MQHYACVVDMYGRAGLLEEAEAFIREM-P-IEAEW 380 (461)
Q Consensus 308 --~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~ 380 (461)
-+|.. .|+-.++..+-..|+++.|+.+++.... ..|+ +..|..-.+.+...|.+++|..++++. . ..||.
T Consensus 363 ~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR 439 (700)
T KOG1156|consen 363 KQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR 439 (700)
T ss_pred ccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence 13444 4555667778889999999999988865 4455 556666678888999999999999988 2 23555
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC---C----hhHHH--HHHHHHhccCChhhHHHHHHHH
Q 038303 381 SVWGALLNACRIHRNDEMFDRIRQDLVNKKGV---S----VGTFA--LMSNTFAGADRWEDTNKIRDEI 440 (461)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~----~~~~~--~l~~~~~~~g~~~~A~~~~~~m 440 (461)
..-.--..-..+.++.++|.++.....+.... + .-.|. .=+.+|.+.|++.+|++=|..+
T Consensus 440 ~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 440 AINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 44334444456788899999888887763321 1 11222 2356788888888887766554
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=5.1e-09 Score=91.96 Aligned_cols=221 Identities=8% Similarity=-0.084 Sum_probs=112.1
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCC--hhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCC
Q 038303 184 YAERGFCKEAVSVFQEMEKTKEAEPN--EATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGD 261 (461)
Q Consensus 184 ~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 261 (461)
....+..+.++.-+.++.......|+ ...|......+...|+.+.|...|+...+ ..+.+...++.+...+...|+
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALA--LRPDMADAYNYLGIYLTQAGN 113 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCC
Confidence 33345566677777776654322222 23344555556666666666666666655 222334566666666666666
Q ss_pred HHHHHHHHHHccC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHh
Q 038303 262 VGIAIQVFNMLAY--K-DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM 338 (461)
Q Consensus 262 ~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 338 (461)
+++|...|+...+ | +...|..+...+...|++++|.+.+++..+. .|+..........+...++.++|...|+..
T Consensus 114 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 114 FDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 6666666666543 2 3445555666666666666666666666653 233221111122233455666666666554
Q ss_pred HhhcCCCCCcchHHHHHHHHhhcCCHHHH--HHHHHhC-CCCc-----hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 038303 339 STVYEIVPQMQHYACVVDMYGRAGLLEEA--EAFIREM-PIEA-----EWSVWGALLNACRIHRNDEMFDRIRQDLVNKK 410 (461)
Q Consensus 339 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~~-~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 410 (461)
.. ...|+...+ .+. ....|+..++ ...+.+. ...+ ....|..+...+...|++++|+..|+++.+..
T Consensus 192 ~~--~~~~~~~~~-~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 192 YE--KLDKEQWGW-NIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred Hh--hCCccccHH-HHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33 222322211 122 2223443332 2112111 1111 12345555566666666666666666666665
Q ss_pred CCC
Q 038303 411 GVS 413 (461)
Q Consensus 411 ~~~ 413 (461)
|++
T Consensus 267 ~~~ 269 (296)
T PRK11189 267 VYN 269 (296)
T ss_pred Cch
Confidence 544
No 77
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=1.4e-09 Score=90.53 Aligned_cols=227 Identities=10% Similarity=0.024 Sum_probs=186.6
Q ss_pred HHHHHHHHHcCChhhHHHHHhcCCC--CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhH-HHHHHHhhcc
Q 038303 147 NAILDFYIRCGSLASCGYLFVKMPK--RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATL-VNVLSACSSI 223 (461)
Q Consensus 147 ~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~~~l~~~~~~ 223 (461)
+-+.++|.+.|.+.+|++.|+...+ |-+.||-.|-..|.+..++..|+.++.+-.+ ..|-.+|| ..+...+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld---~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD---SFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh---cCCchhhhhhhhHHHHHHH
Confidence 6788999999999999999998765 7888999999999999999999999999988 44555554 4566778888
Q ss_pred chhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccC---CChhhHHHHHHHHHhcCChHHHHHHH
Q 038303 224 SALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY---KDKISWSTVISGLAMNGCGRQALQLF 300 (461)
Q Consensus 224 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 300 (461)
++.+.+.++++...+ -.+.+......+...|.-.++.+.|..++.++.+ .+...|+.+.-+|.-.+++|-++..|
T Consensus 304 ~~~~~a~~lYk~vlk--~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLK--LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHh--cCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 999999999999988 3344455556677788888999999999998874 57888999999999999999999999
Q ss_pred HHHHhcCCCCCH--hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 038303 301 SLMIINAVFPDD--VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIE 377 (461)
Q Consensus 301 ~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 377 (461)
++....--.|+. ..|-.+-......|++..|.+.|+-... .-..+...++.|.-.-.+.|++++|..+++.. ...
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 998876544554 4566677777788999999999988776 34456778888888888999999999999887 444
Q ss_pred chh
Q 038303 378 AEW 380 (461)
Q Consensus 378 p~~ 380 (461)
|+.
T Consensus 460 P~m 462 (478)
T KOG1129|consen 460 PDM 462 (478)
T ss_pred ccc
Confidence 553
No 78
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.17 E-value=6.9e-09 Score=89.77 Aligned_cols=226 Identities=14% Similarity=0.041 Sum_probs=137.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHH
Q 038303 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMY 256 (461)
Q Consensus 177 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 256 (461)
...+.+++...|+++.++ .+.... -.|.......+...+....+-+.+..-++..........+..+.......+
T Consensus 38 ~~~~~Rs~iAlg~~~~vl---~ei~~~--~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVL---SEIKKS--SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHTT-HHHHH---HHS-TT--SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHH---HHhccC--CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 334455556666555332 232222 344444444444444433333333333333222111112223333334456
Q ss_pred HhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHc----CCChHHHH
Q 038303 257 VKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH----GGLVDQGL 332 (461)
Q Consensus 257 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~ 332 (461)
...|++++|+++++.. .+.......+..+.+.++++.|.+.++.|.+. . +..+...+..++.. .+++..|.
T Consensus 113 ~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~-eD~~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D-EDSILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S-CCHHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C-CcHHHHHHHHHHHHHHhCchhHHHHH
Confidence 6778888888887765 45666777888899999999999999999874 2 34555556555443 44799999
Q ss_pred HHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC--CCCchhhHHHHHHHHHHhcCCh-HHHHHHHHHHhhc
Q 038303 333 ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVWGALLNACRIHRND-EMFDRIRQDLVNK 409 (461)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 409 (461)
.+|+++.. ...+++.+.+.+..+....|++++|.+++.+. ..+.+..+...++......|+. +.+.+++.++...
T Consensus 188 y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 188 YIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999877 56678888888999999999999999999887 2233455666666666666666 7788888888877
Q ss_pred CCCCh
Q 038303 410 KGVSV 414 (461)
Q Consensus 410 ~~~~~ 414 (461)
.|..+
T Consensus 266 ~p~h~ 270 (290)
T PF04733_consen 266 NPNHP 270 (290)
T ss_dssp TTTSH
T ss_pred CCCCh
Confidence 77654
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.16 E-value=3.5e-09 Score=84.01 Aligned_cols=193 Identities=9% Similarity=0.008 Sum_probs=145.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHccCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HhHHHHHHHHHH
Q 038303 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKD---KISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD-DVTFIALISACS 323 (461)
Q Consensus 248 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~ 323 (461)
+...|.-.|...|+...|..-+++..+.| ..+|..+...|.+.|+.+.|.+-|++..+. .|+ ....|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHH
Confidence 44566777888888888888888887543 456777888888888888888888888774 343 366777777778
Q ss_pred cCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHH
Q 038303 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDR 401 (461)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 401 (461)
..|++++|...|+....+....--..+|..+.-+..+.|+.+.|...|++. ...| .......+.....+.|++..|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 888888888888888775555555678888888888888888888888877 3333 33355556666778888888888
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHH
Q 038303 402 IRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442 (461)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 442 (461)
+++......+.+......-++.-.+.|+-+.|-+.=.++.+
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 88888887778888888888888888888777776655544
No 80
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.3e-07 Score=81.54 Aligned_cols=296 Identities=10% Similarity=-0.017 Sum_probs=195.9
Q ss_pred CCCCCcchHHHHHHHHHhh--CCHHHHHHHHHHHHHh-CCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHH-
Q 038303 5 PSSYNHYTFTQALKACSLA--HPHQKALEIHAHVIEY-GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWT- 80 (461)
Q Consensus 5 g~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 80 (461)
.+.|+..+...-+.+++.. ++-..+.+.+-.+... -++.+......+.+.+...|+.++|...|++....|+.+..
T Consensus 189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~ 268 (564)
T KOG1174|consen 189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEA 268 (564)
T ss_pred ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhh
Confidence 3455555555555555433 4444444444444332 35556778888888888899999999999887444433222
Q ss_pred --HHHHHHHcCCChHHHHHHHhcC-C-CCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHc
Q 038303 81 --TIISGLSKCGFHKEAIDMFCGI-D-VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRC 156 (461)
Q Consensus 81 --~li~~~~~~~~~~~a~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (461)
...-.+...|+.+....+...+ . ..-....|..-+.......++..|..+-+..++.... +...+-.-...+...
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhc
Confidence 2223345677777776666655 2 2233333444444455667788888887777766433 444444445667788
Q ss_pred CChhhHHHHHhcCCC---CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHH-HH-hhccchhhhHHH
Q 038303 157 GSLASCGYLFVKMPK---RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVL-SA-CSSISALSFGKY 231 (461)
Q Consensus 157 g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~a~~ 231 (461)
|+.++|.-.|+.... -+..+|.-|+.+|...|++.+|.-.-+...+. .+.+..+...+- .. +.....-++|..
T Consensus 348 ~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHH
Confidence 889998888887654 36788999999999999999988888777665 566666665552 33 233445677777
Q ss_pred HHHHHHhhcCCCCc-chHHHHHHHHHHhcCCHHHHHHHHHHcc--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 038303 232 VHSYISTRYDLSVS-NLVGNAVINMYVKCGDVGIAIQVFNMLA--YKDKISWSTVISGLAMNGCGRQALQLFSLMIIN 306 (461)
Q Consensus 232 ~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 306 (461)
+++...+ +.|+ ....+.+...+...|..+++..+++... .+|....+.|.+.+...+.+.+|++.|......
T Consensus 426 f~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 426 FAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 7776544 3333 3345667777888888888888887765 468888888888888888888888888887764
No 81
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.14 E-value=7.8e-09 Score=94.87 Aligned_cols=224 Identities=11% Similarity=0.066 Sum_probs=115.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC----------CCce-eHHHHHHHHHcCCChHHHHHHHhcC---------CCCC
Q 038303 47 IQNSLLHFYVTVKDIFSAHQIFNSVVF----------PDVV-SWTTIISGLSKCGFHKEAIDMFCGI---------DVKP 106 (461)
Q Consensus 47 ~~~~ll~~~~~~~~~~~a~~~~~~~~~----------~~~~-~~~~li~~~~~~~~~~~a~~~~~~m---------~~~p 106 (461)
+...+...|...|+++.|..+++...+ |.+. ..+.+...|...+++++|..+|+++ ...|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 334455555556666666555554411 1111 1222444555566666666666555 1222
Q ss_pred C-chhHHHHHHHhcccchhHHHHHHHHHHHhh-----cC-CCC-hhHHHHHHHHHHHcCChhhHHHHHhcCCC-------
Q 038303 107 N-ANTLVSVLSACSSLVSHKLGKAIHAHSLRN-----LN-ENN-IILDNAILDFYIRCGSLASCGYLFVKMPK------- 171 (461)
Q Consensus 107 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------- 171 (461)
. ..+++.|..+|.+.|++++|...++...+. |. .|. ...++.+...++..+++++|..++....+
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 1 234455555566666666666666555432 11 111 12345555666677777777766654432
Q ss_pred Cc----hhHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCCC-hhhHHHHHHHhhccchhhhHHHHHHHHHhh--
Q 038303 172 RN----VVSWTTMIGGYAERGFCKEAVSVFQEMEKT-----KEAEPN-EATLVNVLSACSSISALSFGKYVHSYISTR-- 239 (461)
Q Consensus 172 ~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~-~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~-- 239 (461)
++ .-+++.|...|.+.|++++|.+++++.... |+..+. ...++.+...|.+.+....|.++|.....-
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 11 235777777888888888888877776542 111222 345556666677777777776666654330
Q ss_pred -cC-CCC-cchHHHHHHHHHHhcCCHHHHHHHHH
Q 038303 240 -YD-LSV-SNLVGNAVINMYVKCGDVGIAIQVFN 270 (461)
Q Consensus 240 -~~-~~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 270 (461)
.| ..| ...+|..|...|.+.|++++|.++.+
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~ 474 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEE 474 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 11 111 12344444444544555444444443
No 82
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.13 E-value=5.7e-07 Score=83.81 Aligned_cols=400 Identities=10% Similarity=0.009 Sum_probs=254.2
Q ss_pred CCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCce-eH
Q 038303 5 PSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF----PDVV-SW 79 (461)
Q Consensus 5 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~ 79 (461)
.+..|...|..+.-++.+.|++..+-+.|++....-+ -....|..+--.+...|.-..|..+++.-.. |+.. .+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 3556888899999999999999999999999887544 3667888888888899999999999987632 3222 22
Q ss_pred HHHHHHHH-cCCChHHHHHHHhcC---------CCCCCchhHHHHHHHhc-----------ccchhHHHHHHHHHHHhhc
Q 038303 80 TTIISGLS-KCGFHKEAIDMFCGI---------DVKPNANTLVSVLSACS-----------SLVSHKLGKAIHAHSLRNL 138 (461)
Q Consensus 80 ~~li~~~~-~~~~~~~a~~~~~~m---------~~~p~~~~~~~ll~~~~-----------~~~~~~~a~~~~~~~~~~~ 138 (461)
-..-..|. +.+.+++++++-.+. .+.|- .|..+.-+|. +.....++.+.+++.++.+
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~--~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPR--GYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhh--HHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 22223333 345666666555444 22232 3333333322 1123456778888888876
Q ss_pred CCCChhHHHHHHHHHHHcCChhhHHHHHhcCCC----CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHH
Q 038303 139 NENNIILDNAILDFYIRCGSLASCGYLFVKMPK----RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214 (461)
Q Consensus 139 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 214 (461)
.. |+.+.-.+.--|+..++++.|.....+..+ .+...|..|.-.+...+++.+|+.+.+..... .+-|..-..
T Consensus 475 ~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~ 551 (799)
T KOG4162|consen 475 PT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMD 551 (799)
T ss_pred CC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhch
Confidence 65 333333344557888999999988887654 57889999999999999999999999987664 222211111
Q ss_pred HHHHHhhccchhhhHHHHHHHHHhh--------------------cCCC-------CcchHHHHHHHHHH---hcCCHHH
Q 038303 215 NVLSACSSISALSFGKYVHSYISTR--------------------YDLS-------VSNLVGNAVINMYV---KCGDVGI 264 (461)
Q Consensus 215 ~~l~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~-------~~~~~~~~li~~~~---~~g~~~~ 264 (461)
.-+..-..-++.+++......+..- .|.. ....++..+..... +.-..+.
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~ 631 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSEL 631 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccc
Confidence 1111111223333322221111110 1110 01112221111111 0001111
Q ss_pred HHHHHHHccCCC------hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHh
Q 038303 265 AIQVFNMLAYKD------KISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM 338 (461)
Q Consensus 265 a~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 338 (461)
....+.....++ ...|......+.+.+..++|...+.+.... ..-....|......+...|..++|.+.|...
T Consensus 632 ~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 632 KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 111111111222 123556667788899999999888888764 2334466776777788899999999999887
Q ss_pred HhhcCCCCC-cchHHHHHHHHhhcCCHHHHHH--HHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 038303 339 STVYEIVPQ-MQHYACVVDMYGRAGLLEEAEA--FIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVS 413 (461)
Q Consensus 339 ~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 413 (461)
.. +.|+ +....++..++.+.|+..-|.. ++..+ ...| +...|..+...+.+.|+.++|.+.|....+..+.+
T Consensus 711 l~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 711 LA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred Hh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 65 4444 6778889999999999888888 88888 5544 56689999999999999999999999999865444
Q ss_pred h
Q 038303 414 V 414 (461)
Q Consensus 414 ~ 414 (461)
|
T Consensus 788 P 788 (799)
T KOG4162|consen 788 P 788 (799)
T ss_pred C
Confidence 3
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.11 E-value=1.4e-07 Score=83.03 Aligned_cols=212 Identities=11% Similarity=-0.029 Sum_probs=106.0
Q ss_pred hhhhHHHHHHHHHhhcCCCCc--chHHHHHHHHHHhcCCHHHHHHHHHHccC--C-ChhhHHHHHHHHHhcCChHHHHHH
Q 038303 225 ALSFGKYVHSYISTRYDLSVS--NLVGNAVINMYVKCGDVGIAIQVFNMLAY--K-DKISWSTVISGLAMNGCGRQALQL 299 (461)
Q Consensus 225 ~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~ 299 (461)
..+.+..-+.++.......|+ ...+..+...|.+.|+.++|...|++..+ | +...|+.+...+...|++++|.+.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 344444444444432222222 23455555566666666666666665542 2 345666666666666666666666
Q ss_pred HHHHHhcCCCCC-HhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC--CC
Q 038303 300 FSLMIINAVFPD-DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM--PI 376 (461)
Q Consensus 300 ~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~ 376 (461)
|++..+. .|+ ..++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|...|++. ..
T Consensus 121 ~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 6666653 333 34555555556666666666666666655 1232211111112233445666666666543 21
Q ss_pred CchhhHHHHHHHHHHhcCChHHHHHHHHHHhh-------cCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcCC
Q 038303 377 EAEWSVWGALLNACRIHRNDEMFDRIRQDLVN-------KKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445 (461)
Q Consensus 377 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 445 (461)
.|+...+ . ......|+...+ ..++.+.+ ..|....+|..++..+.+.|++++|...|++..+.++
T Consensus 196 ~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 2222111 1 111223333322 23333331 2233345666666666666666666666666665443
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.10 E-value=5.5e-08 Score=77.36 Aligned_cols=160 Identities=8% Similarity=-0.077 Sum_probs=76.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcC
Q 038303 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362 (461)
Q Consensus 283 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 362 (461)
|.-+|...|+...|..-+++..+.... +..++..+...|.+.|..+.|.+-|+.... --+-+..+.|.....+|..|
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhCC
Confidence 444455555555555555555543211 224444444455555555555555555544 12223444445555555555
Q ss_pred CHHHHHHHHHhCCCCc----hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHH
Q 038303 363 LLEEAEAFIREMPIEA----EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRD 438 (461)
Q Consensus 363 ~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 438 (461)
++++|...|++.-..| ...+|..+..+..+.|+.+.|...|++.++..|..+.+...+.+...+.|++-.|...++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 5555555555541111 112344444444455555555555555555555555555555555555555555555555
Q ss_pred HHHHcCC
Q 038303 439 EIRRMGL 445 (461)
Q Consensus 439 ~m~~~g~ 445 (461)
.....|.
T Consensus 198 ~~~~~~~ 204 (250)
T COG3063 198 RYQQRGG 204 (250)
T ss_pred HHHhccc
Confidence 5544433
No 85
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=1.7e-06 Score=78.32 Aligned_cols=378 Identities=8% Similarity=-0.021 Sum_probs=224.3
Q ss_pred HHHHHhcCCHHHHHHHHhhC---CCCCceeHHHHHHHHHcCCChHHHHHHHhcC-CCCCCchhHHHHHHHhcccchhHHH
Q 038303 52 LHFYVTVKDIFSAHQIFNSV---VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSVLSACSSLVSHKLG 127 (461)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a 127 (461)
++.+...|++++|.+...++ .+.+...+..-+-++...+++++|+++.+.- ++..+..-+.-=..+..+.+..++|
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHH
Confidence 56677889999999999888 3345677888888889999999999887655 2222222211222334477889999
Q ss_pred HHHHHHHHhhcCCCC-hhHHHHHHHHHHHcCChhhHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 038303 128 KAIHAHSLRNLNENN-IILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA 206 (461)
Q Consensus 128 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 206 (461)
...++ |..++ ..+...-...+.+.|++++|..+|+.+.+.+...+...+.+-+..--...... .+.... .
T Consensus 99 lk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~---~~q~v~-~ 169 (652)
T KOG2376|consen 99 LKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ---LLQSVP-E 169 (652)
T ss_pred HHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH---HHHhcc-C
Confidence 88877 33333 33555556778899999999999999977665555554443221111111111 232222 2
Q ss_pred CCChhhHHHHHHH---hhccchhhhHHHHHHHHHhh----c--CCCCcc-------hHHHHHHHHHHhcCCHHHHHHHHH
Q 038303 207 EPNEATLVNVLSA---CSSISALSFGKYVHSYISTR----Y--DLSVSN-------LVGNAVINMYVKCGDVGIAIQVFN 270 (461)
Q Consensus 207 ~~~~~~~~~~l~~---~~~~~~~~~a~~~~~~~~~~----~--~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~ 270 (461)
.| ..+|..+.+. +...|++..|+++++...+. . +...+. .+--.|...+...|+.++|..++.
T Consensus 170 v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 170 VP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 33 4466666554 45679999999999988220 0 111111 111335556778999999999998
Q ss_pred HccCC---Chh----hHHHHHHHHHh---------------------------------------------cCChHHHHH
Q 038303 271 MLAYK---DKI----SWSTVISGLAM---------------------------------------------NGCGRQALQ 298 (461)
Q Consensus 271 ~~~~~---~~~----~~~~l~~~~~~---------------------------------------------~~~~~~a~~ 298 (461)
.+.+. |.. .-|.++..-.. .+..+.+.+
T Consensus 249 ~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~ 328 (652)
T KOG2376|consen 249 DIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRE 328 (652)
T ss_pred HHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 87643 111 11111110000 001111111
Q ss_pred HHHHHHhcCCCCCHhHHHHHHHHHHc--CCChHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHhhcCCHHHHHHHHH---
Q 038303 299 LFSLMIINAVFPDDVTFIALISACSH--GGLVDQGLILFKAMSTVYEIVPQ-MQHYACVVDMYGRAGLLEEAEAFIR--- 372 (461)
Q Consensus 299 ~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~--- 372 (461)
+.... -+..|. ..+..++..+.+ ...+..|..++..... +.+-. ..+.-.++......|+++.|.+++.
T Consensus 329 ~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~ 403 (652)
T KOG2376|consen 329 LSASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFL 403 (652)
T ss_pred HHHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 11111 011222 334444444322 2357778888877766 44333 4555667788889999999999998
Q ss_pred -----hC-CCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhh----cCC---CChhHHHHHHHHHhccCChhhHHHHHHH
Q 038303 373 -----EM-PIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVN----KKG---VSVGTFALMSNTFAGADRWEDTNKIRDE 439 (461)
Q Consensus 373 -----~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 439 (461)
.+ ...-.+.+...+...+.+.++.+.|..+++.++. ..+ .-..++..++..-.+.|+.++|..++++
T Consensus 404 ~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~lee 483 (652)
T KOG2376|consen 404 ESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEE 483 (652)
T ss_pred hhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHH
Confidence 33 2223334455566667888888888888888775 112 2233444555555678999999999999
Q ss_pred HHHcC
Q 038303 440 IRRMG 444 (461)
Q Consensus 440 m~~~g 444 (461)
+.+..
T Consensus 484 l~k~n 488 (652)
T KOG2376|consen 484 LVKFN 488 (652)
T ss_pred HHHhC
Confidence 98743
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.05 E-value=9.2e-07 Score=80.74 Aligned_cols=258 Identities=9% Similarity=-0.051 Sum_probs=153.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHH---HHHHhhccchhhhHHHHHHHHHhhcCCCCcc-hHHHHHHHHHH
Q 038303 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVN---VLSACSSISALSFGKYVHSYISTRYDLSVSN-LVGNAVINMYV 257 (461)
Q Consensus 182 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~---~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~ 257 (461)
..+...|++++|.+++++..+. .|.+...+.. ........+..+.+.+.+.. . .+..|+. .....+...+.
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~-~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--W-APENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhc--c-CcCCCCcHHHHHHHHHHHH
Confidence 3456677888888888887764 3333333331 11111223444444444433 1 2233333 34445667788
Q ss_pred hcCCHHHHHHHHHHccC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CCH--hHHHHHHHHHHcCCChHHH
Q 038303 258 KCGDVGIAIQVFNMLAY---KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF-PDD--VTFIALISACSHGGLVDQG 331 (461)
Q Consensus 258 ~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~--~~~~~ll~~~~~~~~~~~a 331 (461)
..|++++|...+++..+ .+...+..+...+...|++++|...+++....... |+. ..|..+...+...|++++|
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 89999999999988764 24566778888889999999999999888764321 232 2355677788889999999
Q ss_pred HHHHHHhHhhcCCCCCcchH-H--HHHHHHhhcCCHHHHHHH--H-HhC-CCCc-hhhHHH--HHHHHHHhcCChHHHHH
Q 038303 332 LILFKAMSTVYEIVPQMQHY-A--CVVDMYGRAGLLEEAEAF--I-REM-PIEA-EWSVWG--ALLNACRIHRNDEMFDR 401 (461)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~-~~~p-~~~~~~--~l~~~~~~~~~~~~a~~ 401 (461)
..++++........+..... + .++..+...|....+.++ + ... +..| ....+. ....++...|+.+.|..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~ 285 (355)
T cd05804 206 LAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDK 285 (355)
T ss_pred HHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 99998875411111211111 1 223333344433333332 1 111 1101 111222 34455788899999999
Q ss_pred HHHHHhhcCCC---------ChhHHHHHHHHHhccCChhhHHHHHHHHHHcC
Q 038303 402 IRQDLVNKKGV---------SVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444 (461)
Q Consensus 402 ~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 444 (461)
+++.+...... ........+.++...|++++|.+.+......+
T Consensus 286 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 286 LLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99888762211 23344555666779999999999998886654
No 87
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.04 E-value=1.3e-06 Score=81.15 Aligned_cols=220 Identities=15% Similarity=0.084 Sum_probs=110.5
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCH
Q 038303 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 262 (461)
Q Consensus 183 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 262 (461)
+....++|.+|+.+++.+.++ +.-..-|..+..-|+..|+++.|+++|-+.-. ++-.|.+|.+.|++
T Consensus 741 aai~akew~kai~ildniqdq---k~~s~yy~~iadhyan~~dfe~ae~lf~e~~~----------~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQ---KTASGYYGEIADHYANKGDFEIAEELFTEADL----------FKDAIDMYGKAGKW 807 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhh---ccccccchHHHHHhccchhHHHHHHHHHhcch----------hHHHHHHHhccccH
Confidence 334455566666666655542 23333455555666666666666666554311 24455666666666
Q ss_pred HHHHHHHHHccCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHh
Q 038303 263 GIAIQVFNMLAYK--DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340 (461)
Q Consensus 263 ~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 340 (461)
++|.++-++...| .+..|-+-..-+-.+|++.+|.++|-... .|+ ..|..|-+.|..+..+++.++-.-
T Consensus 808 ~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 808 EDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhCh
Confidence 6666666555544 33445555555556666666665554332 132 234556666666665555543321
Q ss_pred hcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHH
Q 038303 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420 (461)
Q Consensus 341 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 420 (461)
..-..|...+..-|-..|+...|..-|-+.+. |.+.++.|..++.++.|-++.+. ....+..-....
T Consensus 879 ----d~l~dt~~~f~~e~e~~g~lkaae~~flea~d------~kaavnmyk~s~lw~dayriakt---egg~n~~k~v~f 945 (1636)
T KOG3616|consen 879 ----DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD------FKAAVNMYKASELWEDAYRIAKT---EGGANAEKHVAF 945 (1636)
T ss_pred ----hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh------HHHHHHHhhhhhhHHHHHHHHhc---cccccHHHHHHH
Confidence 11123344455556666666666666655531 33444455555555555444322 233333333333
Q ss_pred HHHHhccCChhhHHHHHHH
Q 038303 421 SNTFAGADRWEDTNKIRDE 439 (461)
Q Consensus 421 ~~~~~~~g~~~~A~~~~~~ 439 (461)
+++-.-- -+.|.+++++
T Consensus 946 lwaksig--gdaavkllnk 962 (1636)
T KOG3616|consen 946 LWAKSIG--GDAAVKLLNK 962 (1636)
T ss_pred HHHHhhC--cHHHHHHHHh
Confidence 3332222 3456666655
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.03 E-value=1.5e-08 Score=87.69 Aligned_cols=245 Identities=11% Similarity=-0.003 Sum_probs=166.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCC
Q 038303 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGD 261 (461)
Q Consensus 182 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 261 (461)
+-+.-.|++..++.-.+ ..... ...+......+.+++...|+.+.+ ..++.. +-.|.......+...+...++
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~-~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~--~~~~~l~av~~la~y~~~~~~ 81 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFS-PENKLERDFYQYRSYIALGQYDSV---LSEIKK--SSSPELQAVRLLAEYLSSPSD 81 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTST-CHHHHHHHHHHHHHHHHTT-HHHH---HHHS-T--TSSCCCHHHHHHHHHHCTSTT
T ss_pred HHHHHhhhHHHHHHHhh-ccCCC-chhHHHHHHHHHHHHHHcCChhHH---HHHhcc--CCChhHHHHHHHHHHHhCccc
Confidence 34455788888876555 22221 222344555667777778876643 344444 336777666666555544456
Q ss_pred HHHHHHHHHHcc-CC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHH
Q 038303 262 VGIAIQVFNMLA-YK----DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFK 336 (461)
Q Consensus 262 ~~~a~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 336 (461)
-+.+..-+++.. .+ +..........+...|++++|++++.+- .+.......+..|.+.++++.|.+.++
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666766665544 22 1222222334567789999999988753 356777888999999999999999999
Q ss_pred HhHhhcCCCCCcchHHHHHHHHhh----cCCHHHHHHHHHhC--CCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 038303 337 AMSTVYEIVPQMQHYACVVDMYGR----AGLLEEAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKK 410 (461)
Q Consensus 337 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 410 (461)
.|.+ +..| .+...+..++.. .+++.+|..+|+++ ...+++.+.+.+..++...|++++|.+++.+..+..
T Consensus 156 ~~~~---~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 156 NMQQ---IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HHHC---CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HHHh---cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 9976 3333 334445554443 34799999999999 445777888888888999999999999999999999
Q ss_pred CCChhHHHHHHHHHhccCCh-hhHHHHHHHHHHc
Q 038303 411 GVSVGTFALMSNTFAGADRW-EDTNKIRDEIRRM 443 (461)
Q Consensus 411 ~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 443 (461)
|.++.+...++.+....|+. +.+.+.+.++...
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999999999988 6677888888764
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.94 E-value=4.5e-06 Score=76.24 Aligned_cols=94 Identities=13% Similarity=0.060 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcc--hHHHHHHHH
Q 038303 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN--LVGNAVINM 255 (461)
Q Consensus 178 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~ 255 (461)
..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|...++.........++. ..+..+...
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 34445566667777777777776663 22333344444444555555555555555444311111111 122334445
Q ss_pred HHhcCCHHHHHHHHHHcc
Q 038303 256 YVKCGDVGIAIQVFNMLA 273 (461)
Q Consensus 256 ~~~~g~~~~a~~~~~~~~ 273 (461)
+...|++++|..++++..
T Consensus 196 ~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 196 YLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHCCCHHHHHHHHHHHh
Confidence 555555555555555543
No 90
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.93 E-value=3.6e-06 Score=78.24 Aligned_cols=305 Identities=14% Similarity=0.077 Sum_probs=153.3
Q ss_pred CCHHHHHHHHhhCCCCCceeHHHHHHHHHcCCChHHHHHHHhcCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhc
Q 038303 59 KDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNL 138 (461)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 138 (461)
.++.+|..+|-+- | .-...|..|....++++|+.+-+..|.+.-...-.+.+.++...|+-+.|-++-. .
T Consensus 545 kkfk~ae~ifleq---n--~te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~----s- 614 (1636)
T KOG3616|consen 545 KKFKEAEMIFLEQ---N--ATEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKE----S- 614 (1636)
T ss_pred hhhhHHHHHHHhc---c--cHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhcc----c-
Confidence 4556666555321 1 1234456666667777777776655333223333444555555555555444311 0
Q ss_pred CCCChhHHHHHHHHHHHcCChhhHHHHHhcCCC--CchhHHHHHHHHHHhc-------------CChHHHHHHHHHHHhc
Q 038303 139 NENNIILDNAILDFYIRCGSLASCGYLFVKMPK--RNVVSWTTMIGGYAER-------------GFCKEAVSVFQEMEKT 203 (461)
Q Consensus 139 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~-------------~~~~~a~~~~~~m~~~ 203 (461)
+-. -.+.|..|.+.|..-+|.+....-.. .|......+..++.+. .++++|++.|++-..-
T Consensus 615 ---dgd-~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf 690 (1636)
T KOG3616|consen 615 ---DGD-GLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAF 690 (1636)
T ss_pred ---cCc-cHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHH
Confidence 111 13456777777777666554322211 3333333333333333 3344444444331110
Q ss_pred CC--------CCCChhhHH-HHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccC
Q 038303 204 KE--------AEPNEATLV-NVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 274 (461)
Q Consensus 204 ~~--------~~~~~~~~~-~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 274 (461)
|. +|...++.. ..-.-+...|+++.|...|-+... ....+.+......+.+|+.+++.+..
T Consensus 691 ~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~----------~~kaieaai~akew~kai~ildniqd 760 (1636)
T KOG3616|consen 691 GKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC----------LIKAIEAAIGAKEWKKAISILDNIQD 760 (1636)
T ss_pred HHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh----------HHHHHHHHhhhhhhhhhHhHHHHhhh
Confidence 00 111111111 001112333444444443333211 12234455566778888888887776
Q ss_pred CChh--hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHH
Q 038303 275 KDKI--SWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352 (461)
Q Consensus 275 ~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 352 (461)
.+.. -|..+...|+..|+++.|.++|-+.- .++-.|..|.+.|+++.|.++-++.. |-......|-
T Consensus 761 qk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~---~~e~t~~~yi 828 (1636)
T KOG3616|consen 761 QKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH---GPEATISLYI 828 (1636)
T ss_pred hccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc---CchhHHHHHH
Confidence 5443 36667778888888888888776542 24556777888888888777665542 3334445555
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCchhhHHHHHHHHHHhcCChHHHHHHHHH
Q 038303 353 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQD 405 (461)
Q Consensus 353 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 405 (461)
+-..-+-+.|++.+|.+++-.++ .|+. .|..|.+.|..+..+++.++
T Consensus 829 akaedldehgkf~eaeqlyiti~-~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 829 AKAEDLDEHGKFAEAEQLYITIG-EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HhHHhHHhhcchhhhhheeEEcc-CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 55555666677776666665553 2322 23444555555555544443
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.93 E-value=1.8e-06 Score=72.91 Aligned_cols=55 Identities=13% Similarity=0.129 Sum_probs=26.9
Q ss_pred HHHHHHHcCCChHHHHHHHhcCCCCCCchhHHHHHH---HhcccchhHHHHHHHHHHHh
Q 038303 81 TIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLS---ACSSLVSHKLGKAIHAHSLR 136 (461)
Q Consensus 81 ~li~~~~~~~~~~~a~~~~~~m~~~p~~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~ 136 (461)
-+...+...|++..|+.-|... +..|+..|..+.+ .|...|+...|..-+...++
T Consensus 43 ElGk~lla~~Q~sDALt~yHaA-ve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle 100 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAA-VEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE 100 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHH-HcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh
Confidence 3555556666666666666554 3333333433332 24444444444444444444
No 92
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=8.1e-06 Score=78.58 Aligned_cols=374 Identities=10% Similarity=0.072 Sum_probs=225.1
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHcCCChHHH
Q 038303 16 ALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEA 95 (461)
Q Consensus 16 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 95 (461)
|+.-+-+.++++--+..++.....|.. ++.++|+|.+.|...++-.+- .+ +.|..-=+..+.-||..+++.-|
T Consensus 844 Lv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~--fL----keN~yYDs~vVGkYCEKRDP~lA 916 (1666)
T KOG0985|consen 844 LVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPER--FL----KENPYYDSKVVGKYCEKRDPHLA 916 (1666)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHH--hc----ccCCcchhhHHhhhhcccCCceE
Confidence 444556677777888888888888886 899999999999876654331 11 12222222333445554444433
Q ss_pred HHHHhcC-------CCCCCchhHHHHHHHhcccchhHH-----------HHHHHHHHHhhcCC--CChhHHHHHHHHHHH
Q 038303 96 IDMFCGI-------DVKPNANTLVSVLSACSSLVSHKL-----------GKAIHAHSLRNLNE--NNIILDNAILDFYIR 155 (461)
Q Consensus 96 ~~~~~~m-------~~~p~~~~~~~ll~~~~~~~~~~~-----------a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 155 (461)
.-.|++- .+-.....|....+-+.+..|.+. -.++.++.++.+++ .|+.-...-+.++..
T Consensus 917 ~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMt 996 (1666)
T KOG0985|consen 917 CVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMT 996 (1666)
T ss_pred EEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHh
Confidence 3222222 111122223333333333333221 12344455554432 344555666788888
Q ss_pred cCChhhHHHHHhcCCC-Cc-----hhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhH
Q 038303 156 CGSLASCGYLFVKMPK-RN-----VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 229 (461)
Q Consensus 156 ~g~~~~a~~~~~~~~~-~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a 229 (461)
.+-..+-+++++++.- ++ ...-|.||-...+. +..++.++.+++..- ..|+ +...+...+-+++|
T Consensus 997 adLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdny--Da~~------ia~iai~~~LyEEA 1067 (1666)
T KOG0985|consen 997 ADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNY--DAPD------IAEIAIENQLYEEA 1067 (1666)
T ss_pred cCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccC--Cchh------HHHHHhhhhHHHHH
Confidence 8888888888888752 22 22334444444443 456677777776543 2333 23345566677888
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 038303 230 KYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309 (461)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 309 (461)
..+|+.... +....+.|+. .-+.++.|.++-++..+| ..|..+..+-.+.|.+.+|.+-|-+.
T Consensus 1068 F~ifkkf~~------n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------ 1130 (1666)
T KOG0985|consen 1068 FAIFKKFDM------NVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------ 1130 (1666)
T ss_pred HHHHHHhcc------cHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------
Confidence 888776432 3333344443 346777777777776654 46888888888888888888777654
Q ss_pred CCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCchhhHHHHHHHH
Q 038303 310 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389 (461)
Q Consensus 310 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 389 (461)
-|+..|..+++.+.+.|.+++-.+++....+ ..-.|.+. +.||-+|.+.++..+-++++. .|+......+..-
T Consensus 1131 dDps~y~eVi~~a~~~~~~edLv~yL~MaRk-k~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdr 1203 (1666)
T KOG0985|consen 1131 DDPSNYLEVIDVASRTGKYEDLVKYLLMARK-KVREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDR 1203 (1666)
T ss_pred CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hhcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHH
Confidence 3667888888888888999888888876666 45556555 567888888888877666542 3555555566666
Q ss_pred HHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHH
Q 038303 390 CRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIR 437 (461)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 437 (461)
|...+.++.|.-++.. .+-|..|+..+...|++..|...-
T Consensus 1204 cf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1204 CFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred HhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777777766654 334555555555555555554433
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=6.6e-07 Score=74.02 Aligned_cols=278 Identities=12% Similarity=0.014 Sum_probs=127.1
Q ss_pred HHHHHHcCChhhHHHHHhcCCC---CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHH-HHHhhccch
Q 038303 150 LDFYIRCGSLASCGYLFVKMPK---RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNV-LSACSSISA 225 (461)
Q Consensus 150 ~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~-l~~~~~~~~ 225 (461)
+..+.+..++..|++++..-.+ ++......|..+|-...++..|...|+++.. ..|...-|..- ..++.+.+.
T Consensus 17 iy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 17 VYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHHHHHHHhcc
Confidence 3334444455555554444333 1333444455555555555555555555544 33444433322 233444455
Q ss_pred hhhHHHHHHHHHhhcCCCCcchHHHHHHH--HHHhcCCHHHHHHHHHHccC-CChhhHHHHHHHHHhcCChHHHHHHHHH
Q 038303 226 LSFGKYVHSYISTRYDLSVSNLVGNAVIN--MYVKCGDVGIAIQVFNMLAY-KDKISWSTVISGLAMNGCGRQALQLFSL 302 (461)
Q Consensus 226 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 302 (461)
+..|.++...|... ++...-..-+. .....+++..+..++++... .+..+.+.......+.|+++.|.+-|+.
T Consensus 94 ~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 94 YADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred cHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHH
Confidence 55555555544331 11110001111 11234555555555555552 3344444444444555666666666665
Q ss_pred HHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCC-------------Cc--------chHHHHHH-----
Q 038303 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP-------------QM--------QHYACVVD----- 356 (461)
Q Consensus 303 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~--------~~~~~l~~----- 356 (461)
..+.+---....|+..+ +..+.++++.|++...++.+ .|++. |+ ..-+.+++
T Consensus 170 AlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIie-RG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLK 247 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIE-RGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLK 247 (459)
T ss_pred HHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHH-hhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhh
Confidence 55533222334444433 33345555666655555554 33221 10 01122222
Q ss_pred --HHhhcCCHHHHHHHHHhCC----CCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCCh
Q 038303 357 --MYGRAGLLEEAEAFIREMP----IEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRW 430 (461)
Q Consensus 357 --~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 430 (461)
.+.+.|+++.|.+-+..|+ ...|++|...+.-. -..+++.+..+-+.-+.+..|-...+|..++-.||+..-+
T Consensus 248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHH
Confidence 2345666666666666662 22344443332211 1223344444444444555555566666666666666666
Q ss_pred hhHHHHH
Q 038303 431 EDTNKIR 437 (461)
Q Consensus 431 ~~A~~~~ 437 (461)
+-|-.++
T Consensus 327 ~lAADvL 333 (459)
T KOG4340|consen 327 DLAADVL 333 (459)
T ss_pred hHHHHHH
Confidence 6665554
No 94
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=7e-06 Score=69.81 Aligned_cols=124 Identities=13% Similarity=-0.026 Sum_probs=58.1
Q ss_pred CCcchHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHH
Q 038303 8 YNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS 87 (461)
Q Consensus 8 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~ 87 (461)
|+....-.|.....-.|.+.+|.++-.... .++..-..|+..--+.++-++-..+-+.+.... .---+|....-
T Consensus 89 ~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhY 162 (557)
T KOG3785|consen 89 APAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHY 162 (557)
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHH
Confidence 444455555555555677777766654321 133333333444445555555554444442211 11112222222
Q ss_pred cCCChHHHHHHHhcC-CCCCCchhHHHHHHH-hcccchhHHHHHHHHHHHhh
Q 038303 88 KCGFHKEAIDMFCGI-DVKPNANTLVSVLSA-CSSLVSHKLGKAIHAHSLRN 137 (461)
Q Consensus 88 ~~~~~~~a~~~~~~m-~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~ 137 (461)
-.-.+.+|++++... .-.|+-...|.-+.. |.+..-++-+.+++.-.++.
T Consensus 163 mR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 163 MRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 223456666666665 444444444443333 34555556666665555544
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=2.5e-06 Score=76.52 Aligned_cols=90 Identities=6% Similarity=-0.048 Sum_probs=75.1
Q ss_pred HHHHhhcCCHHHHHHHHHhC--CCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhh
Q 038303 355 VDMYGRAGLLEEAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWED 432 (461)
Q Consensus 355 ~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 432 (461)
...+.+.|++..|++.+.++ ..+.|...|..-..+|.+.|.+..|+.-.+..++..|+....|..=+.++.-..+|+.
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydk 444 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDK 444 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999988 3344666788888888999999999999999999999999999998999989999999
Q ss_pred HHHHHHHHHHcC
Q 038303 433 TNKIRDEIRRMG 444 (461)
Q Consensus 433 A~~~~~~m~~~g 444 (461)
|.+.|++-.+..
T Consensus 445 Aleay~eale~d 456 (539)
T KOG0548|consen 445 ALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHhcC
Confidence 999987776654
No 96
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=8.3e-06 Score=73.25 Aligned_cols=395 Identities=10% Similarity=-0.009 Sum_probs=241.3
Q ss_pred HHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCC--CCC-ceeHHHHHHHHHcCCChHH
Q 038303 18 KACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV--FPD-VVSWTTIISGLSKCGFHKE 94 (461)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~li~~~~~~~~~~~ 94 (461)
++....|+++.|...|.+.+...+. |...|+.-..+|++.|++++|.+=-.+-+ .|+ +..|+....++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 4567889999999999999987764 88889988999999999999987666553 343 4679999999999999999
Q ss_pred HHHHHhcC-CCCCC-chhHHHHHHHhccc---chhHHHHHHHHHHHhhc---CCCChhHHHHHHH----------HHHHc
Q 038303 95 AIDMFCGI-DVKPN-ANTLVSVLSACSSL---VSHKLGKAIHAHSLRNL---NENNIILDNAILD----------FYIRC 156 (461)
Q Consensus 95 a~~~~~~m-~~~p~-~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~----------~~~~~ 156 (461)
|+.-|.+- ...|+ ...+..+..+.... ++.-.--.++..+...- .......|..++. .|...
T Consensus 89 A~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 89 AILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 99999887 56664 44556666665111 00000000111110000 0000011111111 11111
Q ss_pred CChhhHHHHHhcCC----------------CC------------c----------hhHHHHHHHHHHhcCChHHHHHHHH
Q 038303 157 GSLASCGYLFVKMP----------------KR------------N----------VVSWTTMIGGYAERGFCKEAVSVFQ 198 (461)
Q Consensus 157 g~~~~a~~~~~~~~----------------~~------------~----------~~~~~~li~~~~~~~~~~~a~~~~~ 198 (461)
.++..|...+.... .| | ..-.-.+.++..+..+++.|.+.+.
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 11222222221110 01 0 1135567888888999999999999
Q ss_pred HHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCc------chHHHHHHHHHHhcCCHHHHHHHHHHc
Q 038303 199 EMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS------NLVGNAVINMYVKCGDVGIAIQVFNML 272 (461)
Q Consensus 199 ~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~~ 272 (461)
...+ +.-+..-++....++...|.+......-+...+ .|...- ......+..+|.+.++++.+...|++.
T Consensus 249 ~a~e---l~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E-~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 249 KALE---LATDITYLNNIAAVYLERGKYAECIELCEKAVE-VGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHh---HhhhhHHHHHHHHHHHhccHHHHhhcchHHHHH-HhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 9988 443333444445557777776666555554444 221111 011122344777788899999999886
Q ss_pred cCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchH
Q 038303 273 AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD-VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY 351 (461)
Q Consensus 273 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 351 (461)
..+... -..+.+....++++.......-. .|.. .-...-...+.+.|++..|...|.++.+ .-+-|...|
T Consensus 325 Lte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk--r~P~Da~lY 395 (539)
T KOG0548|consen 325 LTEHRT-----PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK--RDPEDARLY 395 (539)
T ss_pred hhhhcC-----HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh--cCCchhHHH
Confidence 533111 11223334455555555554442 2333 1122225567788999999999998887 336678888
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCch-hhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhc
Q 038303 352 ACVVDMYGRAGLLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAG 426 (461)
Q Consensus 352 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (461)
..-.-+|.+.|.+..|++-.+.. ...|+ ...|..=..++....+++.|.+.|.+..+.+|.+......+.++...
T Consensus 396 sNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 396 SNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 88888999999999888877666 33343 33444444456667788899999999988888887777776666654
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.90 E-value=4.7e-06 Score=86.20 Aligned_cols=325 Identities=10% Similarity=-0.066 Sum_probs=202.1
Q ss_pred cccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCC----C----c----hhHHHHHHHHHHh
Q 038303 119 SSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK----R----N----VVSWTTMIGGYAE 186 (461)
Q Consensus 119 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~----~----~~~~~~li~~~~~ 186 (461)
...|+.+.+...++.+.......+..........+...|++++|..++..... . + ......+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 34566666666655542221122233334455566778999998888875532 1 1 1112223345668
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCh----hhHHHHHHHhhccchhhhHHHHHHHHHhhcCC--CC--cchHHHHHHHHHHh
Q 038303 187 RGFCKEAVSVFQEMEKTKEAEPNE----ATLVNVLSACSSISALSFGKYVHSYISTRYDL--SV--SNLVGNAVINMYVK 258 (461)
Q Consensus 187 ~~~~~~a~~~~~~m~~~~~~~~~~----~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~--~~--~~~~~~~li~~~~~ 258 (461)
.|++++|...+++..+.- ...+. .....+...+...|+++.|...+........- .+ .......+...+..
T Consensus 465 ~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 465 DGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred CCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 899999999999887631 11121 23344455567789999999888887652111 11 12344566777888
Q ss_pred cCCHHHHHHHHHHccCC-------C----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCC--HhHHHHHHHHHH
Q 038303 259 CGDVGIAIQVFNMLAYK-------D----KISWSTVISGLAMNGCGRQALQLFSLMIINA--VFPD--DVTFIALISACS 323 (461)
Q Consensus 259 ~g~~~~a~~~~~~~~~~-------~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g--~~p~--~~~~~~ll~~~~ 323 (461)
.|++++|...+++.... + ...+..+...+...|++++|...+++..... ..+. ...+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999988765421 1 1234445566777899999999998875531 1122 234444556677
Q ss_pred cCCChHHHHHHHHHhHhhcCCCCCcchH-----HHHHHHHhhcCCHHHHHHHHHhCCC-C-chhh----HHHHHHHHHHh
Q 038303 324 HGGLVDQGLILFKAMSTVYEIVPQMQHY-----ACVVDMYGRAGLLEEAEAFIREMPI-E-AEWS----VWGALLNACRI 392 (461)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~~----~~~~l~~~~~~ 392 (461)
..|+++.|...++..............+ ...+..+...|+.+.|..++..... . .... .+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8999999999988875421111111111 1122445568999999999877621 1 1111 13345556788
Q ss_pred cCChHHHHHHHHHHhhcC-----C-CChhHHHHHHHHHhccCChhhHHHHHHHHHHcC
Q 038303 393 HRNDEMFDRIRQDLVNKK-----G-VSVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444 (461)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 444 (461)
.|+.++|...++++.... + ....++..++.++.+.|+.++|...+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899999999999987621 1 124567788889999999999999999987654
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=4e-05 Score=72.52 Aligned_cols=160 Identities=11% Similarity=0.004 Sum_probs=81.9
Q ss_pred hhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCceeHHHHHHHHHcCCChHHHHHHHh
Q 038303 22 LAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-PDVVSWTTIISGLSKCGFHKEAIDMFC 100 (461)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~ 100 (461)
..|.+++|+.++.+-++.+ .|=+.|-..|.+++|.++-+.--+ .=..+|.....-+-..++.+.|++.|+
T Consensus 812 eLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred HHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 4455555555555554421 223344455666666665544311 111234444444445566666666665
Q ss_pred cCCC----------------------CCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC
Q 038303 101 GIDV----------------------KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGS 158 (461)
Q Consensus 101 ~m~~----------------------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 158 (461)
+.+. ..|...|.....-+-..|+.+.|..+|..... |-++++..|-.|+
T Consensus 883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGK 953 (1416)
T ss_pred hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccC
Confidence 5511 11222223333333344555555555443332 2344444455555
Q ss_pred hhhHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038303 159 LASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME 201 (461)
Q Consensus 159 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 201 (461)
.++|-++-++- .|......|.+.|-..|++.+|..+|.+..
T Consensus 954 ~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 954 TDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred chHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 55555544433 355666677888888888888888887764
No 99
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.88 E-value=4.2e-07 Score=89.84 Aligned_cols=205 Identities=8% Similarity=0.029 Sum_probs=159.1
Q ss_pred CCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCC--------ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHh
Q 038303 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK--------DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDV 313 (461)
Q Consensus 242 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 313 (461)
.+-+...|-..|......+++++|.++.++.... -...|.++++.....|.-+...++|++..+.. -.-.
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 3344556777788888888888888888887632 23467777777777777788888888887741 1235
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc---hhhHHHHHHHH
Q 038303 314 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA---EWSVWGALLNA 389 (461)
Q Consensus 314 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~ 389 (461)
.|..|...|.+.+.+++|.++++.|.+.++ .....|...+..+.+..+-+.|..++.++ ..-| ......-.+..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 677888888999999999999999988555 67788888889998888888898888887 2223 33344445555
Q ss_pred HHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcCCccccC
Q 038303 390 CRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTG 450 (461)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 450 (461)
-.+.|+.+++..+|+......|.....|+.+++.-.+.|+.+.+..+|+++...++.|...
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 6788999999999999988888888899999999999999999999999998888876543
No 100
>PF12854 PPR_1: PPR repeat
Probab=98.87 E-value=2.5e-09 Score=58.88 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=22.8
Q ss_pred CCCCCCcchHHHHHHHHHhhCCHHHHHHHHHHH
Q 038303 4 CPSSYNHYTFTQALKACSLAHPHQKALEIHAHV 36 (461)
Q Consensus 4 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 36 (461)
+|+.||..||+.+|+++++.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 466677777777777777777777777777665
No 101
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=1.5e-05 Score=75.15 Aligned_cols=367 Identities=9% Similarity=0.017 Sum_probs=185.3
Q ss_pred HHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----------CCc-eeHHHHHHHHH
Q 038303 20 CSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-----------PDV-VSWTTIISGLS 87 (461)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----------~~~-~~~~~li~~~~ 87 (461)
|..-|+.+.|.+-.+.++ +...|..|...|.+.++++-|.-.+-.|.. .|. ..-.-..-...
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAi 811 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAI 811 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHH
Confidence 445566666666555543 334666777777777666666655555510 111 11111111123
Q ss_pred cCCChHHHHHHHhcCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHh
Q 038303 88 KCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFV 167 (461)
Q Consensus 88 ~~~~~~~a~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 167 (461)
..|.+++|..+|.+- .-|..+=..|-..|.+++|.++-+.--+.- =..||-.....+-..++.+.|++.|+
T Consensus 812 eLgMlEeA~~lYr~c------kR~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQC------KRYDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred HHhhHHHHHHHHHHH------HHHHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 445666666666443 122223333444556666655533211111 12334444444555566666666665
Q ss_pred cCCC-----------------------CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccc
Q 038303 168 KMPK-----------------------RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224 (461)
Q Consensus 168 ~~~~-----------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~ 224 (461)
+... +|...|.-...-+-..|+.+.|+.+|....+ |-.++...|-.|
T Consensus 883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~qG 952 (1416)
T KOG3617|consen 883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIKCIQG 952 (1416)
T ss_pred hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeEeecc
Confidence 5432 2333444444445556777777777777654 445666677778
Q ss_pred hhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHH-------------H--h
Q 038303 225 ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGL-------------A--M 289 (461)
Q Consensus 225 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~-------------~--~ 289 (461)
+.++|-++-++- -|......|.+.|-..|++.+|..+|-+.. ++...|+.| . .
T Consensus 953 k~~kAa~iA~es-------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq-----afsnAIRlcKEnd~~d~L~nlal~s~ 1020 (1416)
T KOG3617|consen 953 KTDKAARIAEES-------GDKAACYHLARMYENDGDVVKAVKFFTRAQ-----AFSNAIRLCKENDMKDRLANLALMSG 1020 (1416)
T ss_pred CchHHHHHHHhc-------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHhcCHHHHHHHHHhhcC
Confidence 888877776553 234455677888888888888888886654 222222211 1 1
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHH---------HHHhHhhcCCCCCcchHHHHHHHHhh
Q 038303 290 NGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL---------FKAMSTVYEIVPQMQHYACVVDMYGR 360 (461)
Q Consensus 290 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~---------~~~~~~~~~~~~~~~~~~~l~~~~~~ 360 (461)
..+.-.|-.+|++. |.. +...+..|-+.|.+.+|+++ ++-+.++..-..|+...+.-.+.++.
T Consensus 1021 ~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~ 1092 (1416)
T KOG3617|consen 1021 GSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFEN 1092 (1416)
T ss_pred chhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 11222233333332 111 22334456667777666643 23333323333456666666666777
Q ss_pred cCCHHHHHHHHHhCCCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhh---cCCCC---hhHHHHHHHHHhccCChhhHH
Q 038303 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVN---KKGVS---VGTFALMSNTFAGADRWEDTN 434 (461)
Q Consensus 361 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~---~~~~~~l~~~~~~~g~~~~A~ 434 (461)
..++++|..++-... -|.-.+. .++..+..--+++.+.|.- ..|+. ......++..|.+.|.+..|.
T Consensus 1093 ~~qyekAV~lL~~ar------~~~~Alq-lC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~At 1165 (1416)
T KOG3617|consen 1093 NQQYEKAVNLLCLAR------EFSGALQ-LCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAAT 1165 (1416)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHH-HHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHH
Confidence 777777777665441 0111122 2233333333333333332 11111 235556666666666666655
Q ss_pred HHHH
Q 038303 435 KIRD 438 (461)
Q Consensus 435 ~~~~ 438 (461)
+-|.
T Consensus 1166 KKfT 1169 (1416)
T KOG3617|consen 1166 KKFT 1169 (1416)
T ss_pred HHHh
Confidence 4443
No 102
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.82 E-value=2.6e-05 Score=66.22 Aligned_cols=283 Identities=10% Similarity=0.021 Sum_probs=164.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHH---HHHHcCCChHHHHHHHhcC-CCCCCchhHHH-HHHHhcccchhH
Q 038303 51 LLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTII---SGLSKCGFHKEAIDMFCGI-DVKPNANTLVS-VLSACSSLVSHK 125 (461)
Q Consensus 51 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m-~~~p~~~~~~~-ll~~~~~~~~~~ 125 (461)
+-..+...|++..|+.-|...+..|+..|.++. ..|...|+-..|+.-+... .++||...-.. -...+.+.|.++
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHH
Confidence 334455566677777777766666666666654 3455666666666655555 66666433221 223355667777
Q ss_pred HHHHHHHHHHhhcCCCCh------------h--HHHHHHHHHHHcCChhhHHHHHhcCCC---CchhHHHHHHHHHHhcC
Q 038303 126 LGKAIHAHSLRNLNENNI------------I--LDNAILDFYIRCGSLASCGYLFVKMPK---RNVVSWTTMIGGYAERG 188 (461)
Q Consensus 126 ~a~~~~~~~~~~~~~~~~------------~--~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~ 188 (461)
.|..-|+.+++..+..+. . .....+..+...|+...|+.....+.+ -|...|..-..+|...|
T Consensus 124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~ 203 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEG 203 (504)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcC
Confidence 777777776665432111 1 112344455566777777777776654 35566666677777777
Q ss_pred ChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHH-------------HHH
Q 038303 189 FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAV-------------INM 255 (461)
Q Consensus 189 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------------i~~ 255 (461)
++..|+.=++...+. -..+..++-.+-..+...|+.+.+....++..+ +.|+...+... +..
T Consensus 204 e~k~AI~Dlk~askL--s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YKklkKv~K~les~e~ 278 (504)
T KOG0624|consen 204 EPKKAIHDLKQASKL--SQDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHKLCFPFYKKLKKVVKSLESAEQ 278 (504)
T ss_pred cHHHHHHHHHHHHhc--cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 777777666666553 233444444555555666666666665555543 33443222111 122
Q ss_pred HHhcCCHHHHHHHHHHccCCCh----h---hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HhHHHHHHHHHHcCCC
Q 038303 256 YVKCGDVGIAIQVFNMLAYKDK----I---SWSTVISGLAMNGCGRQALQLFSLMIINAVFPD-DVTFIALISACSHGGL 327 (461)
Q Consensus 256 ~~~~g~~~~a~~~~~~~~~~~~----~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~ 327 (461)
....+++.++.+..+...+.++ . .+..+-.++...+++.+|+....+..+ +.|| ..++.--..+|.-...
T Consensus 279 ~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~ 356 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEM 356 (504)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHH
Confidence 3345666666666655543221 1 233344555666778888887777776 3454 5677777777777778
Q ss_pred hHHHHHHHHHhHh
Q 038303 328 VDQGLILFKAMST 340 (461)
Q Consensus 328 ~~~a~~~~~~~~~ 340 (461)
++.|+.-|+...+
T Consensus 357 YD~AI~dye~A~e 369 (504)
T KOG0624|consen 357 YDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHHHHh
Confidence 8888887777766
No 103
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.82 E-value=9.7e-06 Score=78.02 Aligned_cols=161 Identities=8% Similarity=-0.022 Sum_probs=101.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHH
Q 038303 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVV 355 (461)
Q Consensus 276 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 355 (461)
+..+|+.|.-. ...|++.-|...|-+-.... +....+|..+.-.|....+++.|...|..... -.+.+...|-...
T Consensus 816 n~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--LdP~nl~~WlG~A 891 (1238)
T KOG1127|consen 816 NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS--LDPLNLVQWLGEA 891 (1238)
T ss_pred cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh--cCchhhHHHHHHH
Confidence 45556655443 45566666666665554432 22445666666677788889999999987765 3344556665555
Q ss_pred HHHhhcCCHHHHHHHHHhC-------CCCchhhHHHHHHHHHHhcCChHHHHH----------HHHHHhhcCCCChhHHH
Q 038303 356 DMYGRAGLLEEAEAFIREM-------PIEAEWSVWGALLNACRIHRNDEMFDR----------IRQDLVNKKGVSVGTFA 418 (461)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~----------~~~~~~~~~~~~~~~~~ 418 (461)
......|+.-++..+|..- +.-|+..-|.....-....|+.++-+. .+++...+.|....+|.
T Consensus 892 li~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~ 971 (1238)
T KOG1127|consen 892 LIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYA 971 (1238)
T ss_pred HhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHH
Confidence 5556678888888887752 333555444443333445555444433 34444456788888888
Q ss_pred HHHHHHhccCChhhHHHHHHHH
Q 038303 419 LMSNTFAGADRWEDTNKIRDEI 440 (461)
Q Consensus 419 ~l~~~~~~~g~~~~A~~~~~~m 440 (461)
..+...-+.+.+.+|.+...+.
T Consensus 972 ~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 972 ANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHhHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887776664
No 104
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.81 E-value=5.4e-07 Score=76.87 Aligned_cols=183 Identities=8% Similarity=-0.108 Sum_probs=117.5
Q ss_pred cchHHHHHHHHHHhcCCHHHHHHHHHHccC--CC-h---hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH--hHHH
Q 038303 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAY--KD-K---ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD--VTFI 316 (461)
Q Consensus 245 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~ 316 (461)
....+..+...+...|++++|...|+++.. |+ . ..+..+..++...|++++|...++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 344566677777888888888888877663 22 1 35566777788888888888888888774322111 1344
Q ss_pred HHHHHHHcC--------CChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCchhhHHHHHHH
Q 038303 317 ALISACSHG--------GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 388 (461)
Q Consensus 317 ~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 388 (461)
.+..++... |+++.|.+.|+.+... .+-+...+..+... +...... . .....+..
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~----~~~~~~~----------~-~~~~~~a~ 174 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM----DYLRNRL----------A-GKELYVAR 174 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH----HHHHHHH----------H-HHHHHHHH
Confidence 444445443 6677777777777661 22222222222111 0000000 0 00123445
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCC---ChhHHHHHHHHHhccCChhhHHHHHHHHHHcC
Q 038303 389 ACRIHRNDEMFDRIRQDLVNKKGV---SVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444 (461)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 444 (461)
.+.+.|++++|+..++.+.+..|. .+..+..++.++.+.|++++|..+++.+....
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 588999999999999999986554 46799999999999999999999999887654
No 105
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=3.9e-05 Score=74.11 Aligned_cols=314 Identities=10% Similarity=0.018 Sum_probs=173.8
Q ss_pred CCceeHHHHHHHHHcCCChHHHHHHHhcCCCCCCchh-----HHHHHHHhcccchhHHHHHHHHHHHhhc----------
Q 038303 74 PDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANT-----LVSVLSACSSLVSHKLGKAIHAHSLRNL---------- 138 (461)
Q Consensus 74 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~p~~~~-----~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------- 138 (461)
.|+..-+.-+.++...+-+.+-++++++.-+.|+.++ -+.++-...+ -+...+.++.+++-.-.
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~ 1060 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIE 1060 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhh
Confidence 4556667777888888888888888888733333222 2222222211 22233333333332211
Q ss_pred -------------CCCChhHHHHHHHHHHHcCChhhHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 038303 139 -------------NENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE 205 (461)
Q Consensus 139 -------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 205 (461)
...+....+.|+. .-+.++.|.++-++..+ ...|..+..+-.+.|...+|++-|-+.
T Consensus 1061 ~~LyEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika----- 1130 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA----- 1130 (1666)
T ss_pred hhHHHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc-----
Confidence 1112222222221 22444444444444443 457899999999999999988877554
Q ss_pred CCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHH
Q 038303 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVIS 285 (461)
Q Consensus 206 ~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~ 285 (461)
.|+..|..++..+.+.|.+++-.+++....+ ..-+|... +.||-+|++.+++.+.++++. -||......+..
T Consensus 1131 --dDps~y~eVi~~a~~~~~~edLv~yL~MaRk-k~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGd 1202 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGKYEDLVKYLLMARK-KVREPYID--SELIFAYAKTNRLTELEEFIA---GPNVANIQQVGD 1202 (1666)
T ss_pred --CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hhcCccch--HHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhH
Confidence 3566899999999999999999999888877 66677666 789999999999888776643 345555555555
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHH
Q 038303 286 GLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365 (461)
Q Consensus 286 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 365 (461)
-|...|.++.|.-+|.. ...|..|...+...|+++.|...-++. .+..+|..+-.+|...+.+.
T Consensus 1203 rcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1203 RCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFR 1266 (1666)
T ss_pred HHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhh
Confidence 56666666666555542 233444555555555555554433222 23444544444444433332
Q ss_pred HHHHHHHhCCCC--chhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhc
Q 038303 366 EAEAFIREMPIE--AEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAG 426 (461)
Q Consensus 366 ~A~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (461)
-|. ..+.. ....-..-++..|...|-+++.+.+++............|..|+-.|++
T Consensus 1267 lAQ----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1267 LAQ----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHH----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 221 11111 1222233444555555555555555555544444444444444444443
No 106
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=5.8e-06 Score=67.55 Aligned_cols=248 Identities=15% Similarity=0.075 Sum_probs=144.5
Q ss_pred HHHcCChhhHHHHHhcCCC--CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHH
Q 038303 153 YIRCGSLASCGYLFVKMPK--RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGK 230 (461)
Q Consensus 153 ~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~ 230 (461)
+.-.|.+..++..-..... .+...--.+-++|...|.+..... +. +.| -.|....+..+.......++.+.-.
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI-~~~-~~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EI-KEG-KATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---cc-ccc-cCChHHHHHHHHHHhhCcchhHHHH
Confidence 4445666665554444332 222223333445555555443221 11 112 2233333333333333344433322
Q ss_pred -HHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 038303 231 -YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309 (461)
Q Consensus 231 -~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 309 (461)
.+.+.+.. .....+......-...|+..|++++|.+..... .+....-.=+..+.+..+++-|.+.+++|.+-
T Consensus 93 ~~l~E~~a~-~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i--- 166 (299)
T KOG3081|consen 93 ASLYELVAD-STDGSNLIDLLLAAIIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQI--- 166 (299)
T ss_pred HHHHHHHHh-hccchhHHHHHHhhHHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 22333333 333333333334445677888888888888773 34444444455667788889999999999873
Q ss_pred CCHhHHHHHHHHHHc----CCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC--CCCchhhHH
Q 038303 310 PDDVTFIALISACSH----GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVW 383 (461)
Q Consensus 310 p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~ 383 (461)
-+..|.+.|..++.+ .+.+..|.-+|++|.+ ..+|++.+.+....++...|++++|..++++. +...++.+.
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 256777777777654 4668889999999976 57788888888888888899999999998888 333455555
Q ss_pred HHHHHH-HHhcCChHHHHHHHHHHhhcCCCC
Q 038303 384 GALLNA-CRIHRNDEMFDRIRQDLVNKKGVS 413 (461)
Q Consensus 384 ~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~ 413 (461)
..++-. .....+.+.-.+.+.+++...|..
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 445444 444445555666666666655544
No 107
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=2.3e-07 Score=83.59 Aligned_cols=220 Identities=10% Similarity=-0.019 Sum_probs=165.1
Q ss_pred hhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCC---ChhhHHHHHHHHHhcCChHHH
Q 038303 220 CSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DKISWSTVISGLAMNGCGRQA 296 (461)
Q Consensus 220 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 296 (461)
+.+.|++.+|.-.|+...+ .-+-+...|..|.......++-..|+..+.+..+- |......|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVk--qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVK--QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHh--hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 3456667777777777766 44555667777777777888878888888777643 556667777788888888888
Q ss_pred HHHHHHHHhcCCC-----C---CHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHH
Q 038303 297 LQLFSLMIINAVF-----P---DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368 (461)
Q Consensus 297 ~~~~~~m~~~g~~-----p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 368 (461)
+..++.-+...++ + +...-.. ..+.....+.+..++|-++....+..+|+.+...|.-.|--.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 8888887654321 0 0000000 1222233344555666666654666688888999999999999999999
Q ss_pred HHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 038303 369 AFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 369 ~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 443 (461)
..|+.+ ..+| |...||.|...++...+.++|+..|.++++..|.-..+...|+-.|...|.+++|.+.|=.....
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 999998 5566 66689999999999999999999999999999999999999999999999999999988776443
No 108
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=5.3e-07 Score=81.36 Aligned_cols=216 Identities=11% Similarity=0.069 Sum_probs=159.2
Q ss_pred hcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCC---CchhHHHHHHHHHHhcCChHHHH
Q 038303 118 CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK---RNVVSWTTMIGGYAERGFCKEAV 194 (461)
Q Consensus 118 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 194 (461)
+.+.|++.+|.-.|+..++..+. +...|..|.......++-..|+..+.+..+ .+..+.-.|.-+|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 56788899999999999988776 888899999999999988888888888776 45667778888899999999999
Q ss_pred HHHHHHHhcCCCC--------CChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHH
Q 038303 195 SVFQEMEKTKEAE--------PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266 (461)
Q Consensus 195 ~~~~~m~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 266 (461)
+.++..+... .+ ++..+-.. ........+....++|-++....+..+|+.+...|.-.|--.|++++|.
T Consensus 374 ~~L~~Wi~~~-p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 374 KMLDKWIRNK-PKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHhC-ccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9998886532 00 00000000 2233334455566666666665666677778888888888888999999
Q ss_pred HHHHHccC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-hHHHHHHHHHHcCCChHHHHHHHHHhH
Q 038303 267 QVFNMLAY--K-DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD-VTFIALISACSHGGLVDQGLILFKAMS 339 (461)
Q Consensus 267 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~ 339 (461)
+.|+.... | |...||.|...++...+.++|+..|.+.++ ++|+- .....|.-+|...|.+++|.+.|=...
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 98888763 4 667888888888888888899999988887 56665 233334456888888888887765543
No 109
>PF12854 PPR_1: PPR repeat
Probab=98.79 E-value=8.5e-09 Score=56.74 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=25.2
Q ss_pred cCCCChhHHHHHHHHHHHcCChhhHHHHHhcCC
Q 038303 138 LNENNIILDNAILDFYIRCGSLASCGYLFVKMP 170 (461)
Q Consensus 138 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 170 (461)
|+.||..+|++||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777764
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.78 E-value=4.6e-05 Score=78.92 Aligned_cols=324 Identities=9% Similarity=-0.037 Sum_probs=203.2
Q ss_pred HHHcCCChHHHHHHHhcC--C-CCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCC------CC--hhHHHHHHHHH
Q 038303 85 GLSKCGFHKEAIDMFCGI--D-VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNE------NN--IILDNAILDFY 153 (461)
Q Consensus 85 ~~~~~~~~~~a~~~~~~m--~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~--~~~~~~l~~~~ 153 (461)
.+...|++..+...++.+ . ...+..........+...|+++++...+....+.-.. +. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 445567777777777766 1 1112222233344456778999999888877553111 11 11222334456
Q ss_pred HHcCChhhHHHHHhcCCC----Cc----hhHHHHHHHHHHhcCChHHHHHHHHHHHhcCC----CCCChhhHHHHHHHhh
Q 038303 154 IRCGSLASCGYLFVKMPK----RN----VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKE----AEPNEATLVNVLSACS 221 (461)
Q Consensus 154 ~~~g~~~~a~~~~~~~~~----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~~~~~~~l~~~~ 221 (461)
...|++++|...+++... .+ ....+.+...+...|++++|...+.+...... ..+...+...+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 688999999988877543 22 13455666778889999999999988765320 1111234445566678
Q ss_pred ccchhhhHHHHHHHHHhh---cCCC--C-cchHHHHHHHHHHhcCCHHHHHHHHHHccC------C--ChhhHHHHHHHH
Q 038303 222 SISALSFGKYVHSYISTR---YDLS--V-SNLVGNAVINMYVKCGDVGIAIQVFNMLAY------K--DKISWSTVISGL 287 (461)
Q Consensus 222 ~~~~~~~a~~~~~~~~~~---~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~------~--~~~~~~~l~~~~ 287 (461)
..|+++.|...++..... .+.. + ....+..+...+...|++++|...+.+... + ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999988876552 2211 1 123344556677788999999998877642 1 123344566677
Q ss_pred HhcCChHHHHHHHHHHHhcCCCC-CHhHH-----HHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcc----hHHHHHHH
Q 038303 288 AMNGCGRQALQLFSLMIINAVFP-DDVTF-----IALISACSHGGLVDQGLILFKAMSTVYEIVPQMQ----HYACVVDM 357 (461)
Q Consensus 288 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~-----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~ 357 (461)
...|++++|...+++........ ....+ ...+..+...|+.+.|...+..... ... .... .+..+..+
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~-~~~-~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPK-PEF-ANNHFLQGQWRNIARA 700 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCC-CCC-ccchhHHHHHHHHHHH
Confidence 88999999999998875421111 11111 1122344558999999999877654 111 1111 13456778
Q ss_pred HhhcCCHHHHHHHHHhC-------CCCch-hhHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 038303 358 YGRAGLLEEAEAFIREM-------PIEAE-WSVWGALLNACRIHRNDEMFDRIRQDLVNKK 410 (461)
Q Consensus 358 ~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 410 (461)
+...|++++|...+++. +..++ ..+...+..++...|+.++|...+.++.+..
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88999999999998877 22221 2244445556889999999999999999854
No 111
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.72 E-value=2.1e-05 Score=75.88 Aligned_cols=395 Identities=10% Similarity=-0.030 Sum_probs=204.7
Q ss_pred HHHHHHHHHHHHHhCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCceeHHHHHHHHHcCCChHHHHHHHhc
Q 038303 26 HQKALEIHAHVIEYGHLHD-IFIQNSLLHFYVTVKDIFSAHQIFNSVVF---PDVVSWTTIISGLSKCGFHKEAIDMFCG 101 (461)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 101 (461)
...|...|-...+.. |+ ...|..|-..|+..-+...|.+.|++... .+...+......|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 444444444443322 22 33566677777766677777777777633 3455667777888888888888777433
Q ss_pred C-CCCC-Cchh--HHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCCCchh-H
Q 038303 102 I-DVKP-NANT--LVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVV-S 176 (461)
Q Consensus 102 m-~~~p-~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~ 176 (461)
. ...| -... |..+.-.+.+.++...+..-|+...+..+. |...|..+..+|.++|++..|.++|.+...-++. .
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 3 1111 1111 222223356677777777777777776655 7777888888888888888888888777652222 2
Q ss_pred HHH--HHHHHHhcCChHHHHHHHHHHHhcCC-----CCCChhhHHHHHHHhhccchhhhHHHHHHHHHhh------cCCC
Q 038303 177 WTT--MIGGYAERGFCKEAVSVFQEMEKTKE-----AEPNEATLVNVLSACSSISALSFGKYVHSYISTR------YDLS 243 (461)
Q Consensus 177 ~~~--li~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~------~~~~ 243 (461)
|.. ..-..+..|.+.+|+..+........ ..--..++..+...+...|-...+..+++...+. ....
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~ 710 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQ 710 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 222 12234567778888877777654210 1111222222222233333333333333332220 0001
Q ss_pred CcchHHHHHHHHHHhcCCHHHHHHHHHHccCCChh--hHHHHHHH-HHhcCCh---H---HHHHHHHHHHhcCCCCCHhH
Q 038303 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKI--SWSTVISG-LAMNGCG---R---QALQLFSLMIINAVFPDDVT 314 (461)
Q Consensus 244 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~-~~~~~~~---~---~a~~~~~~m~~~g~~p~~~~ 314 (461)
.+...|.. ..+|..+|-... |+.+ .+..++.. +-..+.. | -+.+.+-.-.+ ...+..+
T Consensus 711 ~~~~~Wi~----------asdac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~ 777 (1238)
T KOG1127|consen 711 SDRLQWIV----------ASDACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYP 777 (1238)
T ss_pred hhHHHHHH----------HhHHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hhhccch
Confidence 11111111 112222332222 2211 11111111 1111111 1 01111111111 1112333
Q ss_pred HHHHHHHHHc--------CCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC--CCCchhhHHH
Q 038303 315 FIALISACSH--------GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVWG 384 (461)
Q Consensus 315 ~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~ 384 (461)
|..+...|.+ ..+...|+..+....+ -..-+..+|+.|.-. ...|.+.-|..-|-+. ..+....+|.
T Consensus 778 WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~ 854 (1238)
T KOG1127|consen 778 WYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWL 854 (1238)
T ss_pred HHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhhee
Confidence 3333333222 2233466677766655 222345555555443 5566777776666544 3333455676
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHH
Q 038303 385 ALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDE 439 (461)
Q Consensus 385 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 439 (461)
.+.-.+.+..+++.|...|.+.....|.+...|..........|+.-++..+|..
T Consensus 855 NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 855 NLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred ccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 6666678888888888888888888888888888777777777877777777755
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.70 E-value=1.8e-06 Score=70.62 Aligned_cols=118 Identities=8% Similarity=0.062 Sum_probs=58.3
Q ss_pred CCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHH-HHhcCC--hHHH
Q 038303 325 GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNA-CRIHRN--DEMF 399 (461)
Q Consensus 325 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~~~--~~~a 399 (461)
.++.+++...++...+ .-+.+...|..+...|...|++++|...+++. ...| +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 3344444444444443 22344455555555555555555555555554 2223 22333333333 234344 3555
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcC
Q 038303 400 DRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444 (461)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 444 (461)
.++++++.+..|.++.++..++..+.+.|++++|...|+++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 555555555555555555555555555555555555555554443
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.69 E-value=6.6e-06 Score=81.82 Aligned_cols=226 Identities=12% Similarity=0.044 Sum_probs=158.2
Q ss_pred CchhHHHHHHHhcccchhHHHHHHHHHHHhhc-CC---CChhHHHHHHHHHHHcCChhhHHHHHhcCCC--CchhHHHHH
Q 038303 107 NANTLVSVLSACSSLVSHKLGKAIHAHSLRNL-NE---NNIILDNAILDFYIRCGSLASCGYLFVKMPK--RNVVSWTTM 180 (461)
Q Consensus 107 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l 180 (461)
+...|-..|......++.++|.++.++++..- +. --..+|.++++.-..-|.-+...++|++..+ .....|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34556667777778888888888888877641 11 1345677777777777777788888888776 234567788
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcC
Q 038303 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCG 260 (461)
Q Consensus 181 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 260 (461)
...|.+.+..++|.++|+.|.+. +......|...+..+.+.++-+.|..++....+...-.-........+..-.+.|
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK--F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK--FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH--hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 88888888888888888888876 5666777777788888888888888888877662222223445566666677788
Q ss_pred CHHHHHHHHHHccCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH--hHHHHHHHHHHcCCChHHHHHH
Q 038303 261 DVGIAIQVFNMLAYK---DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD--VTFIALISACSHGGLVDQGLIL 334 (461)
Q Consensus 261 ~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~ 334 (461)
+.+.+..+|+..... -...|+..+..-.++|+.+.+..+|++....++.|-. ..|...+..=-+.|+-..++.+
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 888888888777633 4567888888888888888888888888887776654 4455555544445555444443
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=1.2e-05 Score=74.87 Aligned_cols=212 Identities=14% Similarity=0.108 Sum_probs=177.0
Q ss_pred hhHHHHHHHHHHHcCChhhHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhc
Q 038303 143 IILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS 222 (461)
Q Consensus 143 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~ 222 (461)
...-..+...+...|-..+|..+|++.. .|.-+|.+|+..|+..+|..+..+-.+ -+||+.-|..+.+....
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLLGDVLHD 469 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHHhhhhccC
Confidence 3344667888899999999999999874 688889999999999999999998877 67999999999999998
Q ss_pred cchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCC---ChhhHHHHHHHHHhcCChHHHHHH
Q 038303 223 ISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DKISWSTVISGLAMNGCGRQALQL 299 (461)
Q Consensus 223 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~ 299 (461)
..-+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+- -..+|-....+..+.+++..|.+.
T Consensus 470 ~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHH
Confidence 88899999998887652 1122222334578999999999876543 456888888888899999999999
Q ss_pred HHHHHhcCCCCCH-hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 038303 300 FSLMIINAVFPDD-VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 300 ~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
|..-.. ..||. ..|+.+-.+|.+.++-.+|...+.+..+ .+ ..+...|...+-...+.|.+++|.+.+.++
T Consensus 542 F~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 542 FHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 999887 45665 7899999999999999999999999988 66 666777888888889999999999999888
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=2.6e-06 Score=79.16 Aligned_cols=220 Identities=10% Similarity=-0.040 Sum_probs=161.9
Q ss_pred CCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHcc--CCChhhHHHHH
Q 038303 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA--YKDKISWSTVI 284 (461)
Q Consensus 207 ~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~ 284 (461)
+|-...-..+...+.+.|-...|..+++.+.. +..++.+|...|+..+|..+..+-. .|+...|..+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem----------w~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LG 464 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM----------WDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLG 464 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH----------HHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhh
Confidence 33333444555666777777777777776643 4667888888888888888775544 35677788877
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCH
Q 038303 285 SGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364 (461)
Q Consensus 285 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 364 (461)
+......-+++|.++.+..-.. .-..+.....+.++++++.+.|+.-.+ --+....+|-.+.-+..+.+++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhh
Confidence 7777666777777777654322 112222223447888888888877766 2234566777788888899999
Q ss_pred HHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHH
Q 038303 365 EEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442 (461)
Q Consensus 365 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 442 (461)
+.|.+.|... ...| +...||.+-.+|.+.++-.+|...++++.+-+..+...|.+..-...+.|.+++|.+.+.++.+
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 9999999887 4555 4558999999999999999999999999987777788888888888999999999999999866
Q ss_pred cCC
Q 038303 443 MGL 445 (461)
Q Consensus 443 ~g~ 445 (461)
...
T Consensus 616 ~~~ 618 (777)
T KOG1128|consen 616 LRK 618 (777)
T ss_pred hhh
Confidence 543
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.60 E-value=1.2e-05 Score=65.70 Aligned_cols=156 Identities=10% Similarity=0.061 Sum_probs=115.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhh
Q 038303 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360 (461)
Q Consensus 281 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 360 (461)
..+-..+...|+-+....+........ .-|.......+....+.|++..|...+++... .-++|...|+.+.-+|-+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 445556666777777777766654421 22334455577777888888888888888876 667788888888888888
Q ss_pred cCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHH
Q 038303 361 AGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRD 438 (461)
Q Consensus 361 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 438 (461)
.|+.++|..-|.+. ...| ++...+.+...+.-.|+.+.|..++.......+.+..+-..+..+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 88888888888777 3333 444567777778888888888888888887777788888888888888888888887664
Q ss_pred H
Q 038303 439 E 439 (461)
Q Consensus 439 ~ 439 (461)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 3
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.59 E-value=1.8e-05 Score=77.01 Aligned_cols=141 Identities=11% Similarity=0.055 Sum_probs=97.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHH
Q 038303 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD-VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354 (461)
Q Consensus 276 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 354 (461)
+...+..|.....+.|++++|..+++...+ +.|+. .....+...+.+.+++++|....+.... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 466677777777778888888888887777 45555 4555666677778888888887777766 334445566667
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHH
Q 038303 355 VDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420 (461)
Q Consensus 355 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 420 (461)
..++.+.|++++|..+|++. ...| +...+..+..++...|+.++|...|+++.+...+....|+.+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 77777788888888888877 2223 355667777777778888888888888877655554555443
No 118
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.59 E-value=1.6e-06 Score=66.99 Aligned_cols=108 Identities=9% Similarity=-0.084 Sum_probs=62.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHh
Q 038303 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRI 392 (461)
Q Consensus 315 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 392 (461)
+..+...+...|++++|...|+.... --+.+...|..+..++.+.|++++|...|++. ...| +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 33445555666666666666666654 22334555566666666666666666666665 2222 44455555555666
Q ss_pred cCChHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038303 393 HRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424 (461)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (461)
.|+.++|+..++..++..|.++..+.....+.
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 66666666666666666666665555544443
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.59 E-value=1.1e-05 Score=68.91 Aligned_cols=183 Identities=13% Similarity=0.044 Sum_probs=120.8
Q ss_pred CChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCc-chHHHHHHHHHHhcCCHHHHHHHHHHccC--CC-hh---hH
Q 038303 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS-NLVGNAVINMYVKCGDVGIAIQVFNMLAY--KD-KI---SW 280 (461)
Q Consensus 208 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~~---~~ 280 (461)
.....+......+...|+++.|...++.+.+.....|. ...+..+..++.+.|++++|...++.+.+ |+ .. .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34556777778889999999999999999773332222 24667788999999999999999999874 32 22 34
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHhcCCCCCHh-HHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchH
Q 038303 281 STVISGLAMN--------GCGRQALQLFSLMIINAVFPDDV-TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY 351 (461)
Q Consensus 281 ~~l~~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 351 (461)
..+..++... |++++|.+.++++.+. .|+.. ....+... .. ....... ..
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---------~~~~~~~---------~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---------LRNRLAG---------KE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---------HHHHHHH---------HH
Confidence 5555555544 7789999999999875 34432 22222111 00 0000000 11
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CC---Cc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 038303 352 ACVVDMYGRAGLLEEAEAFIREM-PI---EA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKG 411 (461)
Q Consensus 352 ~~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 411 (461)
..+...+.+.|++++|...+++. .. .| ....+..+..++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 24556678888888888888877 22 22 234677777778888888888888877765443
No 120
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.58 E-value=2.8e-06 Score=65.66 Aligned_cols=93 Identities=6% Similarity=-0.121 Sum_probs=61.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccC
Q 038303 351 YACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428 (461)
Q Consensus 351 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (461)
+..+...+...|++++|...|+.. ...| +...+..+..++...|++++|...|+++.+..|.++.++..++.++.+.|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 444556666677777777777766 3333 44455566666777777777777777777777777777777777777777
Q ss_pred ChhhHHHHHHHHHHc
Q 038303 429 RWEDTNKIRDEIRRM 443 (461)
Q Consensus 429 ~~~~A~~~~~~m~~~ 443 (461)
++++|...+++..+.
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 777777777776554
No 121
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.57 E-value=0.00046 Score=62.53 Aligned_cols=127 Identities=9% Similarity=-0.017 Sum_probs=72.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCchhhH-HHHHHHHH
Q 038303 314 TFIALISACSHGGLVDQGLILFKAMSTVYEIVP-QMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSV-WGALLNAC 390 (461)
Q Consensus 314 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~ 390 (461)
+|..+++.-.+..-+..|..+|.+..++ +..+ ++.++++++.-|| .++.+-|.++|+-- ..-+|... ....+.-+
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFL 445 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 4555555555666666666666666663 3333 5566666666554 35666666666654 22233332 23344445
Q ss_pred HhcCChHHHHHHHHHHhhc-CCC--ChhHHHHHHHHHhccCChhhHHHHHHHHHH
Q 038303 391 RIHRNDEMFDRIRQDLVNK-KGV--SVGTFALMSNTFAGADRWEDTNKIRDEIRR 442 (461)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 442 (461)
...++-+.+..+|+++... .++ ....|..++.--..-|+...+.++-+++..
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5666666666666666654 222 235666666666666666666666666544
No 122
>PLN02789 farnesyltranstransferase
Probab=98.55 E-value=7.4e-05 Score=65.86 Aligned_cols=224 Identities=11% Similarity=0.043 Sum_probs=120.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhh-HHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHH
Q 038303 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEAT-LVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVIN 254 (461)
Q Consensus 176 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 254 (461)
++..+-..+...++.++|+.++.++++ ..|+..| |..--..+...+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~---lnP~~ytaW~~R~~iL~~L~~----------------------------- 86 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIR---LNPGNYTVWHFRRLCLEALDA----------------------------- 86 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH---HCchhHHHHHHHHHHHHHcch-----------------------------
Confidence 455555666667778888888888777 4444432 2222222222221
Q ss_pred HHHhcCCHHHHHHHHHHccCC---ChhhHHHHHHHHHhcCCh--HHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChH
Q 038303 255 MYVKCGDVGIAIQVFNMLAYK---DKISWSTVISGLAMNGCG--RQALQLFSLMIINAVFPDDVTFIALISACSHGGLVD 329 (461)
Q Consensus 255 ~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~--~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 329 (461)
++++++..++++.+. +..+|+.....+.+.|+. ++++.+++++.+...+ +..+|......+...|+++
T Consensus 87 ------~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~ 159 (320)
T PLN02789 87 ------DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWE 159 (320)
T ss_pred ------hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHH
Confidence 345555555544422 223344333333333332 4455566566554322 4455555555555666666
Q ss_pred HHHHHHHHhHhhcCCCCCcchHHHHHHHHhhc---CCH----HHHHHHHHhC-CCCc-hhhHHHHHHHHHHhc----CCh
Q 038303 330 QGLILFKAMSTVYEIVPQMQHYACVVDMYGRA---GLL----EEAEAFIREM-PIEA-EWSVWGALLNACRIH----RND 396 (461)
Q Consensus 330 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----~~~ 396 (461)
++++.++++.+ .. +.+...|+.....+.+. |+. +++..+..++ ...| +...|+.+...+... +..
T Consensus 160 eeL~~~~~~I~-~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~ 237 (320)
T PLN02789 160 DELEYCHQLLE-ED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSD 237 (320)
T ss_pred HHHHHHHHHHH-HC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccc
Confidence 66666666655 11 23333444333333332 222 3455555343 3333 455666666666552 344
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHHhccC------------------ChhhHHHHHHHH
Q 038303 397 EMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD------------------RWEDTNKIRDEI 440 (461)
Q Consensus 397 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m 440 (461)
.+|.+.+.++.+..+.++.+...|+..|+... ..++|.++++.+
T Consensus 238 ~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 238 PEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred hhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 56777787777777888888888888887632 346788888888
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.55 E-value=1.4e-05 Score=65.45 Aligned_cols=155 Identities=13% Similarity=0.079 Sum_probs=113.4
Q ss_pred HHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHH
Q 038303 253 INMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL 332 (461)
Q Consensus 253 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 332 (461)
+..|...|+++.+....+.+..+. ..+...++.+++...++...+.. +.+...|..+...|...|+++.|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456788888888766654443321 01223567778888888877754 336688888888999999999999
Q ss_pred HHHHHhHhhcCCCCCcchHHHHHHHH-hhcCC--HHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHh
Q 038303 333 ILFKAMSTVYEIVPQMQHYACVVDMY-GRAGL--LEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLV 407 (461)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 407 (461)
..|++..+ -.+.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|+..|+++.
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99998877 2344677777777764 67677 58999999988 4445 45566667777899999999999999999
Q ss_pred hcCCCChhHHH
Q 038303 408 NKKGVSVGTFA 418 (461)
Q Consensus 408 ~~~~~~~~~~~ 418 (461)
+..|++..-+.
T Consensus 172 ~l~~~~~~r~~ 182 (198)
T PRK10370 172 DLNSPRVNRTQ 182 (198)
T ss_pred hhCCCCccHHH
Confidence 98877765543
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.54 E-value=1.7e-05 Score=77.17 Aligned_cols=133 Identities=9% Similarity=0.004 Sum_probs=115.1
Q ss_pred CCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCchhh-HHH
Q 038303 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ-MQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS-VWG 384 (461)
Q Consensus 308 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~ 384 (461)
...+...+..|.....+.|.+++|+.+++...+ +.|+ ......++..+.+.+++++|+..+++. ...|+.. ...
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 445688899999999999999999999999987 4455 566677888999999999999999998 5566555 445
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 038303 385 ALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 385 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 443 (461)
.+..++...|++++|..+|+++....|.+..++..++.++...|+.++|...|++..+.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55666899999999999999999988999999999999999999999999999998654
No 125
>PLN02789 farnesyltranstransferase
Probab=98.51 E-value=0.0003 Score=62.11 Aligned_cols=208 Identities=10% Similarity=0.011 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHcCChhhHHHHHhcCCC--C-chhHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCChhhHHHHHHHh
Q 038303 145 LDNAILDFYIRCGSLASCGYLFVKMPK--R-NVVSWTTMIGGYAERG-FCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC 220 (461)
Q Consensus 145 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~ 220 (461)
++..+-..+...++.++|+.+.+++.+ | +..+|+....++...| ++++++..++++.+. .+.+..+|...-..+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHH
Confidence 344455566677899999999999876 3 3445666666666777 679999999999885 233333443322222
Q ss_pred hccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccC---CChhhHHHHHHHHHhcCChHHHH
Q 038303 221 SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY---KDKISWSTVISGLAMNGCGRQAL 297 (461)
Q Consensus 221 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 297 (461)
.+.+.. ..+++..+++.+.+ .|..+|+....++...|++++++
T Consensus 117 ~~l~~~----------------------------------~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL 162 (320)
T PLN02789 117 EKLGPD----------------------------------AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDEL 162 (320)
T ss_pred HHcCch----------------------------------hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHH
Confidence 222221 01233444444332 23445555555555555566666
Q ss_pred HHHHHHHhcCCCCCHhHHHHHHHHHHcC---CCh----HHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhc----CCHHH
Q 038303 298 QLFSLMIINAVFPDDVTFIALISACSHG---GLV----DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA----GLLEE 366 (461)
Q Consensus 298 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~---~~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~ 366 (461)
+.++++++.++. +...|+.....+.+. |.. ++.+.+...+.. ..+-+...|+.+...+... ++..+
T Consensus 163 ~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~ 239 (320)
T PLN02789 163 EYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPE 239 (320)
T ss_pred HHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchh
Confidence 666666554433 334444443333322 111 234444434433 2233445555555555442 23344
Q ss_pred HHHHHHhC-CCCc-hhhHHHHHHHHHH
Q 038303 367 AEAFIREM-PIEA-EWSVWGALLNACR 391 (461)
Q Consensus 367 A~~~~~~~-~~~p-~~~~~~~l~~~~~ 391 (461)
|.+.+.+. ...| +......|+..|+
T Consensus 240 ~~~~~~~~~~~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 240 VSSVCLEVLSKDSNHVFALSDLLDLLC 266 (320)
T ss_pred HHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence 55555554 2222 3334444555544
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=0.00011 Score=60.44 Aligned_cols=216 Identities=8% Similarity=0.004 Sum_probs=139.9
Q ss_pred HHHHHHHHcCChhhHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHH-HHHHHHhcCCCCCChhhHHHHHHHhhccchh
Q 038303 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVS-VFQEMEKTKEAEPNEATLVNVLSACSSISAL 226 (461)
Q Consensus 148 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~-~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~ 226 (461)
-+.++|...|++.....-...-..+.......+......-++.++-+. +.+.+.... ...+......-...|+..+++
T Consensus 46 y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~-~~sn~i~~l~aa~i~~~~~~~ 124 (299)
T KOG3081|consen 46 YMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELVADST-DGSNLIDLLLAAIIYMHDGDF 124 (299)
T ss_pred HHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhc-cchhHHHHHHhhHHhhcCCCh
Confidence 345566666766544433333333444444444443433444444333 344444432 344434444445568888999
Q ss_pred hhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCC-hhhHHHHHHHHHh----cCChHHHHHHHH
Q 038303 227 SFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD-KISWSTVISGLAM----NGCGRQALQLFS 301 (461)
Q Consensus 227 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~----~~~~~~a~~~~~ 301 (461)
+.|.+...... +......=+..+.+..+++-|.+.++.|.+-| ..+.+.|..++.+ .+...+|.-+|+
T Consensus 125 deAl~~~~~~~-------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyife 197 (299)
T KOG3081|consen 125 DEALKALHLGE-------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFE 197 (299)
T ss_pred HHHHHHHhccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 99888877521 22222333556678889999999999999764 4566767776654 456889999999
Q ss_pred HHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHH-HHHHHhC
Q 038303 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA-EAFIREM 374 (461)
Q Consensus 302 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~ 374 (461)
+|-++ ..|+..+.+....++...|++++|..+++.... .-..++.+...++.+-...|...++ .+.+.+.
T Consensus 198 E~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~--kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 198 ELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD--KDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 99875 678999999999999999999999999999987 3345566666666666666765443 4455555
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.47 E-value=8.8e-06 Score=66.54 Aligned_cols=135 Identities=15% Similarity=0.108 Sum_probs=114.9
Q ss_pred CCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC--CCCchhhHHHHH
Q 038303 309 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVWGAL 386 (461)
Q Consensus 309 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 386 (461)
.|+......+-..+...|+-+....+...... ..+.+......++....+.|++.+|...+++. ..++|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 45443335566677788888888888877654 44556667777999999999999999999999 666788899999
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcCC
Q 038303 387 LNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445 (461)
Q Consensus 387 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 445 (461)
.-+|.+.|+++.|...+.+..+..|.++..++.++-.|.-.|+.+.|..++......+.
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999998876654
No 128
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.43 E-value=7.3e-06 Score=73.58 Aligned_cols=121 Identities=12% Similarity=0.079 Sum_probs=96.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHh
Q 038303 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRI 392 (461)
Q Consensus 315 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 392 (461)
...|+..+...++++.|..+|+++.+. . |+ ....+++.+...++-.+|.+++.+. ...| +......-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~-~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER-D--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc-C--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445566667788899999999998872 2 44 4556788888888888999888887 3334 44444444555889
Q ss_pred cCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHH
Q 038303 393 HRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEI 440 (461)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 440 (461)
.++++.|+.+.+++.+..|.+..+|..|+.+|.+.|++++|+..++.+
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999998876
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.41 E-value=0.00014 Score=71.75 Aligned_cols=148 Identities=5% Similarity=-0.035 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHccCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHc
Q 038303 248 VGNAVINMYVKCGDVGIAIQVFNMLAYK---DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324 (461)
Q Consensus 248 ~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 324 (461)
.+..+..+|-+.|+.++|..+|+++.+- |+...|.+...|... +.++|++++.+.... +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 4455666666666666666666666532 455566666666666 666666666655442 444
Q ss_pred CCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCchhhHHHHHHHHHHhcCChHHHHHHHH
Q 038303 325 GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQ 404 (461)
Q Consensus 325 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 404 (461)
.+++..+.++|.++.. ..+.+...+..+.+..... .+..--..++..+-..|...++++++..+++
T Consensus 182 ~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~------------~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 182 KKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGH------------REFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred hhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhh------------hccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 4566666666666655 2222222222222221111 1112223344455566788888999999999
Q ss_pred HHhhcCCCChhHHHHHHHHHh
Q 038303 405 DLVNKKGVSVGTFALMSNTFA 425 (461)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~~~~ 425 (461)
.+.+..|.|..+...++.+|.
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHH
Confidence 999988888888888888886
No 130
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.40 E-value=0.0024 Score=61.58 Aligned_cols=413 Identities=11% Similarity=0.026 Sum_probs=207.2
Q ss_pred HhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHH--HHhcCCHHHHHHHHhhC---CCCCceeHHHHHHHHHcCCChHHH
Q 038303 21 SLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHF--YVTVKDIFSAHQIFNSV---VFPDVVSWTTIISGLSKCGFHKEA 95 (461)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a 95 (461)
...+++..|++....+.+.. |+.. |..++.+ +.+.|+.++|..+++.. ...|..+...+-..|-+.++.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 45667788888877777653 3322 2333333 34778888888777766 234666777777888888888888
Q ss_pred HHHHhcC-CCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC----------hhhHHH
Q 038303 96 IDMFCGI-DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGS----------LASCGY 164 (461)
Q Consensus 96 ~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~ 164 (461)
..+|+.. +..|+......+..++.+.+++.+-.++--++-+.-++ +...+=++++.....-. ..-|.+
T Consensus 97 ~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 97 VHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 8888888 77777666677777777777776655554444443222 33333233333332211 123455
Q ss_pred HHhcCCCCc--hhH---HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhh
Q 038303 165 LFVKMPKRN--VVS---WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR 239 (461)
Q Consensus 165 ~~~~~~~~~--~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ 239 (461)
.++.+.+.+ ..+ .-.-...+-..|++++|++++..-....-...+...-+.-+..+...+++.+..++-.++..
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~- 254 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE- 254 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH-
Confidence 555554422 111 11112234456778888887733222210222333333445556666677776666666655
Q ss_pred cCCCCcchHHHHHHHH----------------HHhcCCHHHHHHHHHHccCC-ChhhHHHHHHHHH---hcCChHHHHHH
Q 038303 240 YDLSVSNLVGNAVINM----------------YVKCGDVGIAIQVFNMLAYK-DKISWSTVISGLA---MNGCGRQALQL 299 (461)
Q Consensus 240 ~~~~~~~~~~~~li~~----------------~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~---~~~~~~~a~~~ 299 (461)
.+... |...+.. +...+..+...+...+.... .-..|-+-+.+.. .-|+.+++...
T Consensus 255 k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~ 330 (932)
T KOG2053|consen 255 KGNDD----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSY 330 (932)
T ss_pred hCCcc----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHH
Confidence 22221 2221111 11222333333333333221 1223333333333 34677765544
Q ss_pred HHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcc-------hHHHHHHHHhhcCC-----HHHH
Q 038303 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQ-------HYACVVDMYGRAGL-----LEEA 367 (461)
Q Consensus 300 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~-----~~~A 367 (461)
|-+- .|-.| .|..=+..|...=..+.-..++..... ..++.. -+...+..-.-.|. -+.-
T Consensus 331 y~~k--fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~---~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i 402 (932)
T KOG2053|consen 331 YFKK--FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVL---ADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSI 402 (932)
T ss_pred HHHH--hCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhc---cCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHH
Confidence 4322 12111 111111222222222222222222211 001100 00011111111111 1111
Q ss_pred HHHHHhC------C------CCchh---------hHHHHHHHHHHhcCChH---HHHHHHHHHhhcCCCChhHHHHHHHH
Q 038303 368 EAFIREM------P------IEAEW---------SVWGALLNACRIHRNDE---MFDRIRQDLVNKKGVSVGTFALMSNT 423 (461)
Q Consensus 368 ~~~~~~~------~------~~p~~---------~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~ 423 (461)
..++++. + .-|+. .+.+.++..|.+.++.. +|+-+++......|.|..+-..++++
T Consensus 403 ~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiri 482 (932)
T KOG2053|consen 403 LAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRI 482 (932)
T ss_pred HHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHH
Confidence 1222111 1 11221 13456677777776654 56777777777888888888899999
Q ss_pred HhccCChhhHHHHHHHHHHcCCccccC
Q 038303 424 FAGADRWEDTNKIRDEIRRMGLKKKTG 450 (461)
Q Consensus 424 ~~~~g~~~~A~~~~~~m~~~g~~~~~~ 450 (461)
|+-.|-+..|.++++.+.-+.|+.|.-
T Consensus 483 Y~~lGa~p~a~~~y~tLdIK~IQ~DTl 509 (932)
T KOG2053|consen 483 YSYLGAFPDAYELYKTLDIKNIQTDTL 509 (932)
T ss_pred HHHhcCChhHHHHHHhcchHHhhhccc
Confidence 999999999999999887777776654
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.38 E-value=9e-05 Score=73.09 Aligned_cols=234 Identities=9% Similarity=0.009 Sum_probs=141.9
Q ss_pred cchHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHcC
Q 038303 10 HYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89 (461)
Q Consensus 10 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 89 (461)
...+..|+..+...+++++|.++.+...+..+. ....|-.+...+.+.++.+.+..+ .++..+...
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~ 96 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQN 96 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccc
Confidence 344666677776777777777777765554322 122222222245555554444333 223333333
Q ss_pred CChHHHHHHHhcCCCCC-CchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhc
Q 038303 90 GFHKEAIDMFCGIDVKP-NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168 (461)
Q Consensus 90 ~~~~~a~~~~~~m~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 168 (461)
.++.-...+...++..| +...+..+..+|-+.|+.+++..+++++++..+. |+.+.|.+...|... ++++|+.++.+
T Consensus 97 ~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 97 LKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred cchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 34433333333332222 3456777788888888899999999998888744 788888888888888 88888887766
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchH
Q 038303 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248 (461)
Q Consensus 169 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 248 (461)
.. ..+...+++.++.+++.++... .|+...+ -.++.+.+....+..--..+
T Consensus 175 AV-----------~~~i~~kq~~~~~e~W~k~~~~---~~~d~d~---------------f~~i~~ki~~~~~~~~~~~~ 225 (906)
T PRK14720 175 AI-----------YRFIKKKQYVGIEEIWSKLVHY---NSDDFDF---------------FLRIERKVLGHREFTRLVGL 225 (906)
T ss_pred HH-----------HHHHhhhcchHHHHHHHHHHhc---CcccchH---------------HHHHHHHHHhhhccchhHHH
Confidence 54 3367777888888888888773 3433222 22333333332333333445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHccCC---ChhhHHHHHHHHH
Q 038303 249 GNAVINMYVKCGDVGIAIQVFNMLAYK---DKISWSTVISGLA 288 (461)
Q Consensus 249 ~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~ 288 (461)
+-.+-..|-...+++++..++..+.+. |.....-++..|.
T Consensus 226 ~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 226 LEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 556667777888888999998888743 4455555666554
No 132
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.35 E-value=2.3e-05 Score=70.39 Aligned_cols=126 Identities=11% Similarity=0.060 Sum_probs=103.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCC
Q 038303 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327 (461)
Q Consensus 248 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 327 (461)
....|+..+...++++.|..+|+++.+.++.....++..+...++..+|.+++++..+.. +-+......-...|.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 345667777778899999999999998887777888888888899999999999988753 2255566666667889999
Q ss_pred hHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 038303 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPI 376 (461)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 376 (461)
++.|+.+.+++.. -.+-+..+|..|..+|.+.|++++|+..+..++.
T Consensus 250 ~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 250 YELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999987 3344567999999999999999999999998853
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.34 E-value=1e-05 Score=62.25 Aligned_cols=93 Identities=11% Similarity=0.046 Sum_probs=48.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccC
Q 038303 351 YACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428 (461)
Q Consensus 351 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (461)
...+...+...|++++|.+.++.. ...| +...+..+...+...|++++|...+++..+..|.++..+..++.+|...|
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Confidence 333444455555555555555554 2222 33344444444555555555555555555555555555555555555555
Q ss_pred ChhhHHHHHHHHHHc
Q 038303 429 RWEDTNKIRDEIRRM 443 (461)
Q Consensus 429 ~~~~A~~~~~~m~~~ 443 (461)
++++|...+++..+.
T Consensus 100 ~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 100 EPESALKALDLAIEI 114 (135)
T ss_pred CHHHHHHHHHHHHHh
Confidence 555555555555443
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.33 E-value=9.7e-05 Score=65.99 Aligned_cols=134 Identities=16% Similarity=0.095 Sum_probs=69.0
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHhHH-HHHHHHHHcCCChHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHhhcCCHH
Q 038303 288 AMNGCGRQALQLFSLMIINAVFPDDVTF-IALISACSHGGLVDQGLILFKAMSTVYEIVPQ-MQHYACVVDMYGRAGLLE 365 (461)
Q Consensus 288 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 365 (461)
...|++++|+..++.+... .|+..-| ......+...++..+|.+.++++.. ..|+ ....-.+.++|.+.|++.
T Consensus 317 ~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCChH
Confidence 3455566666666665543 3333333 2333345556666666666665554 2233 344444555566666666
Q ss_pred HHHHHHHhC--CCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 038303 366 EAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 366 ~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 443 (461)
+|..++++. ..+.|+..|..|..+|...|+..++.....+ .|...|++++|...+....++
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE-----------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE-----------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH-----------------HHHhCCCHHHHHHHHHHHHHh
Confidence 666665555 3333455566666666666555555443332 334445555555555555444
No 135
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.33 E-value=1e-06 Score=49.36 Aligned_cols=33 Identities=36% Similarity=0.617 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 038303 279 SWSTVISGLAMNGCGRQALQLFSLMIINAVFPD 311 (461)
Q Consensus 279 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 311 (461)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888886
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.33 E-value=0.00017 Score=64.45 Aligned_cols=115 Identities=14% Similarity=0.063 Sum_probs=58.0
Q ss_pred cCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCch-hhHHHHHHHHHHhcCChHHHHH
Q 038303 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDR 401 (461)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~ 401 (461)
..|.++.|+..++.+.. ..+-|+.......+.+.+.++.++|.+.++++ ...|+ ....-.+..++.+.|++.+|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 44555555555555544 33344444444455555555555555555555 33333 2233334444555555555555
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHH
Q 038303 402 IRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEI 440 (461)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 440 (461)
+++......|.++..|..|+++|...|+..+|....-+.
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 555555555555555555555555555555555444443
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=0.00014 Score=59.24 Aligned_cols=187 Identities=10% Similarity=0.035 Sum_probs=143.5
Q ss_pred hcCCHHHHHHHHHHccC--------CCh-hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHH-HHHcCCC
Q 038303 258 KCGDVGIAIQVFNMLAY--------KDK-ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALIS-ACSHGGL 327 (461)
Q Consensus 258 ~~g~~~~a~~~~~~~~~--------~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~~~ 327 (461)
...+.++..+++.++.. ++. ..|..++-+....|+.+.|...++.+.+. + |...-...+=. -+...|+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhc
Confidence 45678888888887762 122 34666677777889999999999998876 3 55543333322 2455899
Q ss_pred hHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC--CCCchhhHHHHHHHHHHhcCChHHHHHHHHH
Q 038303 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMFDRIRQD 405 (461)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 405 (461)
+++|+++++.+.+ .-+.|..++-.-+...-..|+.-+|++-+.+. ....|...|.-+...|...|+++.|.-.+++
T Consensus 102 ~~~A~e~y~~lL~--ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLE--DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhc--cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 9999999999988 33666777777777777788888888877766 5557888999999999999999999999999
Q ss_pred HhhcCCCChhHHHHHHHHHhccC---ChhhHHHHHHHHHHcCCccc
Q 038303 406 LVNKKGVSVGTFALMSNTFAGAD---RWEDTNKIRDEIRRMGLKKK 448 (461)
Q Consensus 406 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g~~~~ 448 (461)
+.-..|-++..+..++..+.-.| +.+-|.+.+.+..+...+..
T Consensus 180 ~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 180 LLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNL 225 (289)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhH
Confidence 99999999999999999876655 56778888888877655433
No 138
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.26 E-value=2.2e-06 Score=47.56 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=31.9
Q ss_pred cchHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCc
Q 038303 10 HYTFTQALKACSLAHPHQKALEIHAHVIEYGHLH 43 (461)
Q Consensus 10 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 43 (461)
..+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999987
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.26 E-value=2e-06 Score=47.69 Aligned_cols=33 Identities=30% Similarity=0.370 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 038303 278 ISWSTVISGLAMNGCGRQALQLFSLMIINAVFP 310 (461)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 310 (461)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777888888877777776
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.25 E-value=2e-06 Score=48.12 Aligned_cols=35 Identities=34% Similarity=0.621 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCh
Q 038303 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNE 210 (461)
Q Consensus 175 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 210 (461)
.+||++|.+|++.|++++|.++|++|.+.| ++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g-~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERG-IEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCCC
Confidence 379999999999999999999999999988 88873
No 141
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.22 E-value=0.0041 Score=56.66 Aligned_cols=418 Identities=10% Similarity=0.038 Sum_probs=234.7
Q ss_pred CCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCceeHHHHHH
Q 038303 7 SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV--VFPDVVSWTTIIS 84 (461)
Q Consensus 7 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~li~ 84 (461)
+-|..+|+.||+-+... ..+++.+.++++... ++-.+..|..-+..-.+..+++..+.+|.+- ..-+...|...+.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 45888899999988776 899999999998763 3345678888888888899999999999876 2345666666665
Q ss_pred HHHc-CCChHHHH----HHHhcC----CCCCCc-hhHHHHHH---H------hcccchhHHHHHHHHHHHhhcCCCChhH
Q 038303 85 GLSK-CGFHKEAI----DMFCGI----DVKPNA-NTLVSVLS---A------CSSLVSHKLGKAIHAHSLRNLNENNIIL 145 (461)
Q Consensus 85 ~~~~-~~~~~~a~----~~~~~m----~~~p~~-~~~~~ll~---~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 145 (461)
---+ .++...+. +.|+-. |+.+-+ ..|+..+. . +....+++...+++++++..-+.-=...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 3222 23322211 222111 544422 22333332 2 3344566677777777765422211111
Q ss_pred HHHH-----------HHHH--HHcCChhhHHHHHhcCCC---------Cc------------hhHHHHHHHHHHhcCC--
Q 038303 146 DNAI-----------LDFY--IRCGSLASCGYLFVKMPK---------RN------------VVSWTTMIGGYAERGF-- 189 (461)
Q Consensus 146 ~~~l-----------~~~~--~~~g~~~~a~~~~~~~~~---------~~------------~~~~~~li~~~~~~~~-- 189 (461)
|+-. .+-+ -+...+..|.+++++... |. ...|-.+|.---.++-
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 2110 0111 122334555555555431 00 1123333322111110
Q ss_pred ------hHHHHHHHHHHHhc-CCCCCChhhH-HHHHH----Hhhccch-------hhhHHHHHHHHHhhcCCCCcchHHH
Q 038303 190 ------CKEAVSVFQEMEKT-KEAEPNEATL-VNVLS----ACSSISA-------LSFGKYVHSYISTRYDLSVSNLVGN 250 (461)
Q Consensus 190 ------~~~a~~~~~~m~~~-~~~~~~~~~~-~~~l~----~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~ 250 (461)
.....-.+++...- + ..|+..-. ...+. .+...|+ .+++..+++.... .-...+..+|.
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~-~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~-~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLG-YHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIE-GLLKENKLLYF 332 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 01111222222111 1 22222110 00011 1222222 3344444444433 11222233333
Q ss_pred HHHHHHHhc---CCHHHHHHHHHHccC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHhHHHHHHHHH
Q 038303 251 AVINMYVKC---GDVGIAIQVFNMLAY----KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP-DDVTFIALISAC 322 (461)
Q Consensus 251 ~li~~~~~~---g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~ 322 (461)
.+...--.. +..+.....+++... .-..+|...+..-.+......|..+|.+..+.+..+ .....++++..+
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 332211111 124444555555542 234678888998889999999999999999988877 566777777766
Q ss_pred HcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC---CCCch--hhHHHHHHHHHHhcCChH
Q 038303 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM---PIEAE--WSVWGALLNACRIHRNDE 397 (461)
Q Consensus 323 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~~~~~ 397 (461)
| +++.+.|.++|+.-.+.+ .-++..-...+.-+...++-..|..+|++. ...|+ ...|..++.--...|+.+
T Consensus 413 c-skD~~~AfrIFeLGLkkf--~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKKF--GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred h-cCChhHHHHHHHHHHHhc--CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence 5 588899999998877733 345555567788889999999999999998 23333 358999999999999999
Q ss_pred HHHHHHHHHhhcCCCC----hhHHHHHHHHHhccCChh
Q 038303 398 MFDRIRQDLVNKKGVS----VGTFALMSNTFAGADRWE 431 (461)
Q Consensus 398 ~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~ 431 (461)
.+..+-++.....|.+ ...-..++.-|.-.+.+.
T Consensus 490 si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 490 SILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred HHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 9999998887654421 123334444454444443
No 142
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.17 E-value=7.1e-05 Score=57.46 Aligned_cols=101 Identities=12% Similarity=-0.025 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHH
Q 038303 313 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNAC 390 (461)
Q Consensus 313 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 390 (461)
.....+...+...|++++|...|+.+.. ..+.+...+..+...+.+.|++++|...+++. ...| +...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3445555666777777777777777765 23445666777777777777777777777766 3333 344555556667
Q ss_pred HhcCChHHHHHHHHHHhhcCCCChh
Q 038303 391 RIHRNDEMFDRIRQDLVNKKGVSVG 415 (461)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~~~~~~ 415 (461)
...|+++.|...+++..+..|.+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 96 LALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhccccch
Confidence 7777888888888777776665543
No 143
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.14 E-value=3.2e-05 Score=58.92 Aligned_cols=97 Identities=9% Similarity=-0.047 Sum_probs=79.4
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCchh-hHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHh
Q 038303 348 MQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEW-SVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425 (461)
Q Consensus 348 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (461)
....-.+...+...|++++|.++|+-. ...|.. .-|..|..+|...|++++|+..|..+....|.++.++..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 334445566677899999999999988 445544 455666667888999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHHcC
Q 038303 426 GADRWEDTNKIRDEIRRMG 444 (461)
Q Consensus 426 ~~g~~~~A~~~~~~m~~~g 444 (461)
..|+.+.|.+.|+......
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999876653
No 144
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.13 E-value=9e-06 Score=56.34 Aligned_cols=78 Identities=12% Similarity=0.114 Sum_probs=49.0
Q ss_pred cCCHHHHHHHHHhC-CCC---chhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHH
Q 038303 361 AGLLEEAEAFIREM-PIE---AEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKI 436 (461)
Q Consensus 361 ~g~~~~A~~~~~~~-~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 436 (461)
.|+++.|+.+++++ ... |+...+..+..++.+.|++++|..++++ .+..+.+......++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35667777777766 222 2334444456667777777777777777 444445556666667778888888888877
Q ss_pred HHH
Q 038303 437 RDE 439 (461)
Q Consensus 437 ~~~ 439 (461)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 145
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.13 E-value=0.0052 Score=54.19 Aligned_cols=110 Identities=18% Similarity=0.138 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCC
Q 038303 248 VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327 (461)
Q Consensus 248 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 327 (461)
+.+..+.-+...|+...|.++-.+..-|+..-|-..+.+++..++|++-..+... +-++..|..++.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3344566666777777888887777777777788888888888887776654332 1134667777777777777
Q ss_pred hHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 038303 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
..+|..+...+. +..-+..|.++|++.+|.+.-.+.
T Consensus 253 ~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 253 KKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 777777765521 144567777777777777665544
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.12 E-value=0.00013 Score=56.62 Aligned_cols=112 Identities=7% Similarity=-0.002 Sum_probs=53.5
Q ss_pred CCChHHHHHHHHHhHhhcCCCCC---cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCchhh----HHHHHHHHHHhcCCh
Q 038303 325 GGLVDQGLILFKAMSTVYEIVPQ---MQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS----VWGALLNACRIHRND 396 (461)
Q Consensus 325 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~~~~~~~ 396 (461)
.++...+...++.+... .+.+ ....-.+...+...|++++|...|+.. ...|+.. ....+...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 45555555555555442 1111 122222334455555555555555555 1112221 122233335555666
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHH
Q 038303 397 EMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDE 439 (461)
Q Consensus 397 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 439 (461)
++|+..++.. ...+..+..+...+.+|.+.|++++|...|++
T Consensus 102 d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 102 DEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666655442 22233445566666666666666666666654
No 147
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=0.00059 Score=55.75 Aligned_cols=197 Identities=12% Similarity=0.048 Sum_probs=144.1
Q ss_pred ccchhhhHHHHHHHHHhh--cC-CCCcch-HHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHH---HHHHHhcCChH
Q 038303 222 SISALSFGKYVHSYISTR--YD-LSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTV---ISGLAMNGCGR 294 (461)
Q Consensus 222 ~~~~~~~a~~~~~~~~~~--~~-~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~ 294 (461)
...+.++..+++..+... .| ..++.. +|..++-+....|+.+.|...++.+...-+.++... ..-+-..|+++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence 345677888888877653 23 444443 556677778889999999999998875323222221 12244578999
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 038303 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 295 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
+|+++++.+.+.. +.|..++..=+...-..|+--+|++-+....+ .+..|...|.-+.+.|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999876 33567777667677778888899999888887 67899999999999999999999999999999
Q ss_pred -CCCchhh-HHHHHHHH-H--HhcCChHHHHHHHHHHhhcCCCChhHHHHHH
Q 038303 375 -PIEAEWS-VWGALLNA-C--RIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421 (461)
Q Consensus 375 -~~~p~~~-~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 421 (461)
-+.|..+ .+..+... | ....+.+.+..++.+..+..|.+...+..+-
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHH
Confidence 5556544 34445444 3 3345678899999999998886655554443
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.06 E-value=5.4e-05 Score=53.78 Aligned_cols=93 Identities=9% Similarity=0.085 Sum_probs=71.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCch-hhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccC
Q 038303 351 YACVVDMYGRAGLLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428 (461)
Q Consensus 351 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (461)
+..+...+...|++++|...+++. ...|+ ...+..+...+...++++.|...++...+..|.+..++..++..+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455666777788888888888876 33333 3456666666778888888998888888877877788888888899999
Q ss_pred ChhhHHHHHHHHHHc
Q 038303 429 RWEDTNKIRDEIRRM 443 (461)
Q Consensus 429 ~~~~A~~~~~~m~~~ 443 (461)
++++|...+++..+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999888877653
No 149
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.012 Score=55.87 Aligned_cols=129 Identities=16% Similarity=0.173 Sum_probs=83.3
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 038303 230 KYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309 (461)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 309 (461)
..+.+.+....+..-...+.+--+.-+...|+..+|.++-.+.+-||-..|-.-+.+++..+++++-+++-+.+.
T Consensus 668 l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk----- 742 (829)
T KOG2280|consen 668 LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK----- 742 (829)
T ss_pred HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC-----
Confidence 344444444455444444555566666777888888888888877777777777777888777777665555442
Q ss_pred CCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 038303 310 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 310 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
.+.-|..+..+|.+.|+.++|.+++.+... . . -...+|.+.|++.+|.++--+-
T Consensus 743 -sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---l---~----ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 743 -SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---L---Q----EKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred -CCCCchhHHHHHHhcccHHHHhhhhhccCC---h---H----HHHHHHHHhccHHHHHHHHHHh
Confidence 245566677778888888888777754421 1 1 3566777777777776654433
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.04 E-value=0.00042 Score=53.83 Aligned_cols=125 Identities=13% Similarity=0.045 Sum_probs=64.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--HhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCC--cchHHHHH
Q 038303 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPD--DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ--MQHYACVV 355 (461)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~ 355 (461)
|..++..+ ..++...+...++.+.+....-. ....-.+...+...|++++|...|+.+.. ....|+ ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~-~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA-NAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCHHHHHHHHHHHH
Confidence 33344443 35666666666666665422110 12222233455666777777777766665 221222 12333455
Q ss_pred HHHhhcCCHHHHHHHHHhCCCC-chhhHHHHHHHHHHhcCChHHHHHHHHHH
Q 038303 356 DMYGRAGLLEEAEAFIREMPIE-AEWSVWGALLNACRIHRNDEMFDRIRQDL 406 (461)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 406 (461)
..+...|++++|+..++..... .....+......+...|+.++|...|+..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6666667777777776665222 22223334444466777777777766654
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.03 E-value=9e-05 Score=55.40 Aligned_cols=100 Identities=11% Similarity=0.005 Sum_probs=44.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCch----hhHHHHHHH
Q 038303 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVP-QMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE----WSVWGALLN 388 (461)
Q Consensus 315 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 388 (461)
+..+...+.+.|++++|...|+.+.....-.+ ....+..+..++.+.|++++|...++.+ ...|+ ...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33444445555555555555555544111000 1223334455555555555555555544 11122 123333334
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCCh
Q 038303 389 ACRIHRNDEMFDRIRQDLVNKKGVSV 414 (461)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~~~~~ 414 (461)
.+...|+.++|...++++.+..|.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 44445555555555555555444443
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.00 E-value=0.00015 Score=54.20 Aligned_cols=93 Identities=11% Similarity=-0.036 Sum_probs=45.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCch----hhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC---hhHHHHHHH
Q 038303 351 YACVVDMYGRAGLLEEAEAFIREM-PIEAE----WSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVS---VGTFALMSN 422 (461)
Q Consensus 351 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~ 422 (461)
+..++..+.+.|++++|.+.|+.+ ...|+ ...+..+...+.+.|+++.|...++.+....|.+ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444555555555555555555 11222 1223334444555555555555555555433332 334555555
Q ss_pred HHhccCChhhHHHHHHHHHHc
Q 038303 423 TFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 423 ~~~~~g~~~~A~~~~~~m~~~ 443 (461)
++.+.|++++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555544
No 153
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.96 E-value=1.2e-05 Score=43.32 Aligned_cols=30 Identities=27% Similarity=0.427 Sum_probs=21.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 038303 279 SWSTVISGLAMNGCGRQALQLFSLMIINAV 308 (461)
Q Consensus 279 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 308 (461)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777776653
No 154
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.94 E-value=0.004 Score=52.87 Aligned_cols=173 Identities=10% Similarity=0.001 Sum_probs=103.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHccCC--Ch-hh---HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHc-
Q 038303 252 VINMYVKCGDVGIAIQVFNMLAYK--DK-IS---WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH- 324 (461)
Q Consensus 252 li~~~~~~g~~~~a~~~~~~~~~~--~~-~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~- 324 (461)
....+.+.|++++|.+.|+.+... +. .. .-.++.++.+.+++++|...+++..+.-..-....+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 344456678888888888887643 21 11 234556778888888888888888775333222344444444331
Q ss_pred -C---------------CCh---HHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCchhhHHHH
Q 038303 325 -G---------------GLV---DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 385 (461)
Q Consensus 325 -~---------------~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 385 (461)
. .+. ..|...|+.+. +-|=.+.-..+|...+..+...--...+ .
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li----------------~~yP~S~ya~~A~~rl~~l~~~la~~e~-~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV----------------RGYPNSQYTTDATKRLVFLKDRLAKYEL-S 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHH----------------HHCcCChhHHHHHHHHHHHHHHHHHHHH-H
Confidence 1 111 22333333333 3333333344444444433111111111 2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCC---ChhHHHHHHHHHhccCChhhHHHHHHHHH
Q 038303 386 LLNACRIHRNDEMFDRIRQDLVNKKGV---SVGTFALMSNTFAGADRWEDTNKIRDEIR 441 (461)
Q Consensus 386 l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 441 (461)
+..-|.+.|.+..|..-++.+++.-|. ...+...+..+|.+.|..++|.++...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 334488899999999999999986554 46678889999999999999998876653
No 155
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.91 E-value=0.018 Score=55.89 Aligned_cols=121 Identities=16% Similarity=0.225 Sum_probs=77.3
Q ss_pred HhcCCHHHHHHHHhhCCC--CCceeHHHHHHH--HHcCCChHHHHHHHhcC-CCCC-CchhHHHHHHHhcccchhHHHHH
Q 038303 56 VTVKDIFSAHQIFNSVVF--PDVVSWTTIISG--LSKCGFHKEAIDMFCGI-DVKP-NANTLVSVLSACSSLVSHKLGKA 129 (461)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~--~~~~~~~~~a~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~ 129 (461)
...+++..|.+...++.+ ||.. |...+.+ +.+.|+.++|..+++.. +..+ |..|...+-..|...+..++|..
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 346778888888877733 4332 3344443 35778888888888877 4443 56677777777778888888888
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHcCChh----hHHHHHhcCCCCchhHHHH
Q 038303 130 IHAHSLRNLNENNIILDNAILDFYIRCGSLA----SCGYLFVKMPKRNVVSWTT 179 (461)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~a~~~~~~~~~~~~~~~~~ 179 (461)
+|++..+..+ +......+..+|.+.+++. .|.+++...++.--.-|+.
T Consensus 99 ~Ye~~~~~~P--~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV 150 (932)
T KOG2053|consen 99 LYERANQKYP--SEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV 150 (932)
T ss_pred HHHHHHhhCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH
Confidence 8887776533 3445555666666666653 3566666655544444544
No 156
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.89 E-value=0.00017 Score=51.01 Aligned_cols=80 Identities=11% Similarity=0.135 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCHhHHHHHHHHHHcCC--------ChHHHHHHHHHhHhhcCCCCCcch
Q 038303 280 WSTVISGLAMNGCGRQALQLFSLMIINAV-FPDDVTFIALISACSHGG--------LVDQGLILFKAMSTVYEIVPQMQH 350 (461)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 350 (461)
....|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|.. .+++|+..+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHHH
Confidence 34456666677999999999999999999 899999999999877642 34567788888888 789999999
Q ss_pred HHHHHHHHhh
Q 038303 351 YACVVDMYGR 360 (461)
Q Consensus 351 ~~~l~~~~~~ 360 (461)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998887765
No 157
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.00038 Score=58.76 Aligned_cols=112 Identities=9% Similarity=0.024 Sum_probs=89.3
Q ss_pred CCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCC-chhhHHHHHHHHH---HhcCChHHHHHHHHHHhhcCCCChhHHH
Q 038303 344 IVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIE-AEWSVWGALLNAC---RIHRNDEMFDRIRQDLVNKKGVSVGTFA 418 (461)
Q Consensus 344 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 418 (461)
-+-|...|-.|...|...|+...|..-|++. .+. ++...+..+..++ ....+..++..+++++...+|.++.+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 4567889999999999999999999999888 333 3333444454542 2334567899999999999999999999
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHcCCccccCccccc
Q 038303 419 LMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWIE 455 (461)
Q Consensus 419 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ 455 (461)
.|+..+...|++.+|...|+.|.+.....+|..+.|+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 9999999999999999999999998887777665543
No 158
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.86 E-value=8.2e-05 Score=49.25 Aligned_cols=64 Identities=6% Similarity=0.023 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccC-ChhhHHHHHHHHHHc
Q 038303 380 WSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD-RWEDTNKIRDEIRRM 443 (461)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 443 (461)
..+|..+...+...|++++|+..|++.++..|.++.+|..++.+|.+.| ++++|++.+++..+.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4567777888999999999999999999999999999999999999999 799999999988764
No 159
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.85 E-value=8.5e-05 Score=48.45 Aligned_cols=58 Identities=5% Similarity=0.035 Sum_probs=50.7
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcC
Q 038303 387 LNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444 (461)
Q Consensus 387 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 444 (461)
...+...|++++|+..|+++++..|.++..+..++.++...|++++|...++++.+..
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4557889999999999999999999999999999999999999999999999987643
No 160
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.84 E-value=0.029 Score=53.04 Aligned_cols=27 Identities=11% Similarity=0.017 Sum_probs=13.7
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHh
Q 038303 43 HDIFIQNSLLHFYVTVKDIFSAHQIFN 69 (461)
Q Consensus 43 ~~~~~~~~ll~~~~~~~~~~~a~~~~~ 69 (461)
|.+..|..+.......-.++.|+..|-
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFV 716 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFV 716 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhh
Confidence 455555555554444445555554443
No 161
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.84 E-value=2.7e-05 Score=41.99 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=26.2
Q ss_pred chHHHHHHHHHhhCCHHHHHHHHHHHHHhCC
Q 038303 11 YTFTQALKACSLAHPHQKALEIHAHVIEYGH 41 (461)
Q Consensus 11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 41 (461)
.+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888899999999999999888888764
No 162
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.84 E-value=0.00074 Score=58.83 Aligned_cols=132 Identities=8% Similarity=0.049 Sum_probs=86.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHH-HHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 038303 279 SWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISA-CSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357 (461)
Q Consensus 279 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 357 (461)
+|..++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+ .++.+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
Confidence 56677777777777888888888877532 1233344433333 3345667778888888877 355667777777888
Q ss_pred HhhcCCHHHHHHHHHhC--CCCch---hhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 038303 358 YGRAGLLEEAEAFIREM--PIEAE---WSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVS 413 (461)
Q Consensus 358 ~~~~g~~~~A~~~~~~~--~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 413 (461)
+.+.|+.+.|..+|++. ...++ ...|...+.--.+.|+.+.+..+.+++.+..|.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 88888888888888877 22222 2377777777777888888888888877765553
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.84 E-value=0.00015 Score=65.51 Aligned_cols=106 Identities=9% Similarity=-0.078 Sum_probs=85.9
Q ss_pred HHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCCh
Q 038303 319 ISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRND 396 (461)
Q Consensus 319 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 396 (461)
...+...|+++.|+..|+++.+ ..+.+...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 4456778999999999999987 33455778888889999999999999999988 4445 455677777789999999
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHHhc
Q 038303 397 EMFDRIRQDLVNKKGVSVGTFALMSNTFAG 426 (461)
Q Consensus 397 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (461)
++|+..|+++++..|.+......+..+..+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999988877776555433
No 164
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.80 E-value=0.00033 Score=58.77 Aligned_cols=100 Identities=17% Similarity=0.131 Sum_probs=65.3
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHhhcCCH
Q 038303 286 GLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ-MQHYACVVDMYGRAGLL 364 (461)
Q Consensus 286 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 364 (461)
-+.+.+++.+|+..|.+.++.... |.+-|..-..+|++.|.++.|++-.+.... +.|. ...|..|..+|...|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCcH
Confidence 455667777777777777774221 445566666677777777777776666654 2333 56777777777777777
Q ss_pred HHHHHHHHhC-CCCchhhHHHHHHHH
Q 038303 365 EEAEAFIREM-PIEAEWSVWGALLNA 389 (461)
Q Consensus 365 ~~A~~~~~~~-~~~p~~~~~~~l~~~ 389 (461)
++|.+.|++. .+.|+-.+|-.=+..
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 7777777776 666666665444433
No 165
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.80 E-value=0.022 Score=50.34 Aligned_cols=109 Identities=11% Similarity=0.112 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCchhhHHHHHHHHHHh
Q 038303 313 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI 392 (461)
Q Consensus 313 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 392 (461)
.+.+..+.-|...|+...|.++-.+. .+ |+...|...+.+|+..++|++-.++-.. +..+.-|..++.+|.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 45555677777888888887776555 33 8899999999999999999988876543 3345778999999999
Q ss_pred cCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHH
Q 038303 393 HRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRD 438 (461)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 438 (461)
.|+..+|..+..++ .+..-+..|.+.|++.+|.+..-
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999888772 23666778889999999876543
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.79 E-value=0.00038 Score=55.88 Aligned_cols=91 Identities=7% Similarity=-0.049 Sum_probs=44.7
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCch----hhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhc
Q 038303 352 ACVVDMYGRAGLLEEAEAFIREM-PIEAE----WSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAG 426 (461)
Q Consensus 352 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (461)
..+...+...|++++|...|++. ...|+ ...+..+...+...|+++.|...++++.+..|.+...+..++.++..
T Consensus 39 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 118 (172)
T PRK02603 39 YRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHK 118 (172)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 33344444444444444444443 11111 12344444445555555555555555555555555555555555555
Q ss_pred cCC--------------hhhHHHHHHHHHH
Q 038303 427 ADR--------------WEDTNKIRDEIRR 442 (461)
Q Consensus 427 ~g~--------------~~~A~~~~~~m~~ 442 (461)
.|+ +++|.+++++..+
T Consensus 119 ~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 119 RGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred cCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 444 4556666655544
No 167
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.74 E-value=0.00037 Score=63.13 Aligned_cols=119 Identities=12% Similarity=0.091 Sum_probs=65.1
Q ss_pred CCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhc-CCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccC----CChhhH
Q 038303 206 AEPNEATLVNVLSACSSISALSFGKYVHSYISTRY-DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY----KDKISW 280 (461)
Q Consensus 206 ~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~ 280 (461)
.+.+......+++.+.+..+++.+..++-...... ....-+.+..++++.|.+.|..+.+..++..=.. ||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 45566666667777776666666666666555421 1112223334566666666666655555543322 455556
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHc
Q 038303 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324 (461)
Q Consensus 281 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 324 (461)
|.|+..+.+.|++..|.++..+|...+...+..|+...+.+|.+
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 66666666666666666655555555544455555544444443
No 168
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.74 E-value=0.00012 Score=50.74 Aligned_cols=81 Identities=12% Similarity=0.144 Sum_probs=39.8
Q ss_pred cCChHHHHHHHHHHHhcCCC-CCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHH
Q 038303 290 NGCGRQALQLFSLMIINAVF-PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368 (461)
Q Consensus 290 ~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 368 (461)
.|+++.|+.+++++.+.... |+...+..+..+|.+.|++++|+.+++. .+ .+. .+....-.+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~-~~~-~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK-LDP-SNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT-HHH-CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC-CCC-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 35566666666666654321 1233333455566666666666666655 21 111 12233334455566666666666
Q ss_pred HHHHh
Q 038303 369 AFIRE 373 (461)
Q Consensus 369 ~~~~~ 373 (461)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66553
No 169
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.73 E-value=0.0038 Score=54.63 Aligned_cols=132 Identities=12% Similarity=0.037 Sum_probs=60.3
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHhCC--C-c--cHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHH
Q 038303 13 FTQALKACSLAHPHQKALEIHAHVIEYGH--L-H--DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS 87 (461)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~-~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~ 87 (461)
|......|-..|++++|...|....+... . + ....|......|. ..++++|.+. |...+..|.
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~-----------~~~A~~~y~ 105 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIEC-----------YEKAIEIYR 105 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHH-----------HHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHH-----------HHHHHHHHH
Confidence 55555555566666666666665533211 0 0 0112222222222 2244444443 333456666
Q ss_pred cCCChHHHHHHHhcCCCCCCchhHHHHHHHhccc-chhHHHHHHHHHHHhhcC---CC--ChhHHHHHHHHHHHcCChhh
Q 038303 88 KCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSL-VSHKLGKAIHAHSLRNLN---EN--NIILDNAILDFYIRCGSLAS 161 (461)
Q Consensus 88 ~~~~~~~a~~~~~~m~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~ 161 (461)
..|++..|-+++.. +...|... |+++.|.+.|++..+.-. .+ -...+..+...+.+.|++++
T Consensus 106 ~~G~~~~aA~~~~~------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~ 173 (282)
T PF14938_consen 106 EAGRFSQAAKCLKE------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEE 173 (282)
T ss_dssp HCT-HHHHHHHHHH------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred hcCcHHHHHHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHH
Confidence 77777776666544 44555565 777777777777654310 00 01223334444445555555
Q ss_pred HHHHHhc
Q 038303 162 CGYLFVK 168 (461)
Q Consensus 162 a~~~~~~ 168 (461)
|..+|++
T Consensus 174 A~~~~e~ 180 (282)
T PF14938_consen 174 AIEIYEE 180 (282)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
No 170
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.72 E-value=0.0012 Score=59.86 Aligned_cols=117 Identities=7% Similarity=0.020 Sum_probs=90.1
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCC-CC-----CceeHHHHHHHHHcCCChHHHHHHHhcC---CCCCCchh
Q 038303 40 GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVV-FP-----DVVSWTTIISGLSKCGFHKEAIDMFCGI---DVKPNANT 110 (461)
Q Consensus 40 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m---~~~p~~~~ 110 (461)
+...+......+++.+....+++.+..++-+.. .| -..+..++|+.|.+.|..+++++++..- |+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 334456666777777777778888888877662 11 2345678999999999999999999776 99999999
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHc
Q 038303 111 LVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRC 156 (461)
Q Consensus 111 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (461)
|+.+++.+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999998888877776777766666665555
No 171
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.72 E-value=0.012 Score=54.84 Aligned_cols=65 Identities=12% Similarity=0.003 Sum_probs=39.5
Q ss_pred HHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHh
Q 038303 267 QVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340 (461)
Q Consensus 267 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 340 (461)
++-.++...+..+...+..-+.+...+.-|-++|.+|-+. ..+++.....+++++|..+-+...+
T Consensus 737 dI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 737 DIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 3333333344455555555566666777777777776432 3456667777888887777666544
No 172
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.05 Score=51.94 Aligned_cols=116 Identities=9% Similarity=0.057 Sum_probs=89.2
Q ss_pred CCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCchhhHHHHH
Q 038303 307 AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 386 (461)
Q Consensus 307 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 386 (461)
|..-...+.+--+.-+...|+..+|.++-.+.+- ||...|-.-+.++...++|++-+++-+..+ .+.-|..+
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PF 750 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPF 750 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhH
Confidence 3334445566666777888999999888776654 888888888999999999999888877773 24557778
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHH
Q 038303 387 LNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRD 438 (461)
Q Consensus 387 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 438 (461)
..+|.+.|+.++|..++-+... +.....+|.+.|++.+|.++--
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHH
Confidence 8999999999999998876532 1167788999999998877643
No 173
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.70 E-value=0.00048 Score=48.72 Aligned_cols=92 Identities=14% Similarity=0.028 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHh
Q 038303 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359 (461)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 359 (461)
+..+...+...|++++|...+++..+... .+...+..+...+...++++.|.+.++.... ..+.+...+..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALE--LDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHH
Confidence 33444455555555666555555554321 1223444444455555555555555555444 11222234444445555
Q ss_pred hcCCHHHHHHHHHhC
Q 038303 360 RAGLLEEAEAFIREM 374 (461)
Q Consensus 360 ~~g~~~~A~~~~~~~ 374 (461)
..|++++|...+.+.
T Consensus 80 ~~~~~~~a~~~~~~~ 94 (100)
T cd00189 80 KLGKYEEALEAYEKA 94 (100)
T ss_pred HHHhHHHHHHHHHHH
Confidence 555555555554443
No 174
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.69 E-value=0.00052 Score=54.89 Aligned_cols=93 Identities=10% Similarity=-0.114 Sum_probs=66.1
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCch----hhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHH
Q 038303 348 MQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE----WSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSN 422 (461)
Q Consensus 348 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 422 (461)
...|..+...+...|++++|...|++. ...|+ ..++..+...+...|++++|+..++++.+..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566666677778888888877776 22222 2356667777888888888888888888877777777777777
Q ss_pred HHh-------ccCChhhHHHHHHHH
Q 038303 423 TFA-------GADRWEDTNKIRDEI 440 (461)
Q Consensus 423 ~~~-------~~g~~~~A~~~~~~m 440 (461)
.+. +.|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 777 778877666655543
No 175
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.67 E-value=0.00016 Score=60.56 Aligned_cols=124 Identities=10% Similarity=-0.051 Sum_probs=94.8
Q ss_pred HHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCch-hhHHHHHHHHHHhcCChHH
Q 038303 321 ACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEM 398 (461)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~ 398 (461)
-..+.+++++|+..|..... -.+-|...|..-..+|++.|.++.|.+-.+.. .+.|. ..+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 46788999999999999987 33456777778889999999999999988887 55554 4589999999999999999
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHhccCChh---hHHHHHHHHHHcCCc
Q 038303 399 FDRIRQDLVNKKGVSVGTFALMSNTFAGADRWE---DTNKIRDEIRRMGLK 446 (461)
Q Consensus 399 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~m~~~g~~ 446 (461)
|++.|++.++..|.+......|-.+-.+.+... .+..-++.....|..
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~ 218 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAF 218 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCC
Confidence 999999999999999866666666555555444 333334333444443
No 176
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.64 E-value=0.0012 Score=59.84 Aligned_cols=104 Identities=10% Similarity=-0.055 Sum_probs=82.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcC
Q 038303 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362 (461)
Q Consensus 283 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 362 (461)
....+...|++++|++.|++.++.... +...|..+..+|...|++++|+..++.+.. --+.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence 345677889999999999999986432 557788888899999999999999999987 23346778888999999999
Q ss_pred CHHHHHHHHHhC-CCCchhhHHHHHHHH
Q 038303 363 LLEEAEAFIREM-PIEAEWSVWGALLNA 389 (461)
Q Consensus 363 ~~~~A~~~~~~~-~~~p~~~~~~~l~~~ 389 (461)
++++|...|++. ...|+.......+..
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999998 555665544444433
No 177
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.63 E-value=0.043 Score=49.18 Aligned_cols=130 Identities=10% Similarity=0.003 Sum_probs=67.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 038303 279 SWSTVISGLAMNGCGRQALQLFSLMIINA-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357 (461)
Q Consensus 279 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 357 (461)
.|...+..-.+....+.|..+|-+..+.| +.++...++.++..++ .|+...|..+|+.-.. .++.+...-...+.-
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHHHH
Confidence 34555555555555666666666666655 4455555555555433 3555566666654443 222222233344455
Q ss_pred HhhcCCHHHHHHHHHhC--CCCch--hhHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 038303 358 YGRAGLLEEAEAFIREM--PIEAE--WSVWGALLNACRIHRNDEMFDRIRQDLVNKKG 411 (461)
Q Consensus 358 ~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 411 (461)
+.+.++-+.|..+|+.. .+..+ ...|..+|.--...|+...+..+-+++.+..|
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 55666666666666644 22222 33455555555555666655555555555443
No 178
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.63 E-value=0.011 Score=51.85 Aligned_cols=90 Identities=7% Similarity=0.035 Sum_probs=42.5
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHhc----CCCCC--HhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCC-----CCcc-
Q 038303 283 VISGLAMN-GCGRQALQLFSLMIIN----AVFPD--DVTFIALISACSHGGLVDQGLILFKAMSTVYEIV-----PQMQ- 349 (461)
Q Consensus 283 l~~~~~~~-~~~~~a~~~~~~m~~~----g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~- 349 (461)
+...|-.. |++++|++.|++..+. | .+. ...+..+...+.+.|++++|.++|+++... ... .+..
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK-CLENNLLKYSAKE 197 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-CCCHCTTGHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-hhcccccchhHHH
Confidence 33445455 5666666666655431 1 111 133445555566666777777777666541 111 1111
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC
Q 038303 350 HYACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 350 ~~~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
.+-..+-++...|++..|.+.+++.
T Consensus 198 ~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 198 YFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1222333445566666666666665
No 179
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.62 E-value=0.047 Score=49.06 Aligned_cols=409 Identities=12% Similarity=0.039 Sum_probs=220.0
Q ss_pred HHhhCCHHHHHHHHHHHHHhCCCccH------HHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCceeHHHHHHHH--HcC
Q 038303 20 CSLAHPHQKALEIHAHVIEYGHLHDI------FIQNSLLHFYVTVKDIFSAHQIFNSVV--FPDVVSWTTIISGL--SKC 89 (461)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~--~~~ 89 (461)
+-+.++..+|..+|..+.+..- .++ ..-+.++++|.. ++++.....+.... .| ...|-.+..++ -+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~-~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKE-SSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh-cchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHh
Confidence 4477899999999999876532 222 234566777763 45555544444442 23 33455555443 367
Q ss_pred CChHHHHHHHhcC-----CCC------------CCchhHHHHHHHhcccchhHHHHHHHHHHHhhcC----CCChhHHHH
Q 038303 90 GFHKEAIDMFCGI-----DVK------------PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLN----ENNIILDNA 148 (461)
Q Consensus 90 ~~~~~a~~~~~~m-----~~~------------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~ 148 (461)
+.+++|++.+... +-. +|..-=+..++++...|.+.++..+++++...-. ..+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8899998887655 111 1112224456678899999999999988876544 489999998
Q ss_pred HHHHHHHcCChh---------------hHHHHHhcCCCCchhHH----------HHHHHHHHhc--CChHHHHHHHHHHH
Q 038303 149 ILDFYIRCGSLA---------------SCGYLFVKMPKRNVVSW----------TTMIGGYAER--GFCKEAVSVFQEME 201 (461)
Q Consensus 149 l~~~~~~~g~~~---------------~a~~~~~~~~~~~~~~~----------~~li~~~~~~--~~~~~a~~~~~~m~ 201 (461)
++-.++++--++ .+.-...+|...+...| ..++....-. .+..--.++++...
T Consensus 173 ~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We 252 (549)
T PF07079_consen 173 AVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWE 252 (549)
T ss_pred HHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHH
Confidence 776666542111 11111112211111111 1111111100 11112222333332
Q ss_pred hcCCCCCChhh-HHHHHHHhhccchhhhHHHHHHHHHhhcCCCC----cchHHHHHHHHHHhcCCHHHHHHHHHHcc--C
Q 038303 202 KTKEAEPNEAT-LVNVLSACSSISALSFGKYVHSYISTRYDLSV----SNLVGNAVINMYVKCGDVGIAIQVFNMLA--Y 274 (461)
Q Consensus 202 ~~~~~~~~~~~-~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~ 274 (461)
..- +.|+-.. ...+...+.+ +.+.+..+-+.+.. ..+.+ =...+..++....+.++...|.+.+.-+. +
T Consensus 253 ~~y-v~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~-~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 253 NFY-VHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIAS-SKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD 328 (549)
T ss_pred hhc-cCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 222 4454332 2233333333 44444444444433 11111 12345666677777888888887776655 3
Q ss_pred CChhh-------HHHHHHHHHhc----CChHHHHHHHHHHHhcCCCCCHhHHHHHHHH---HHcCCC-hHHHHHHHHHhH
Q 038303 275 KDKIS-------WSTVISGLAMN----GCGRQALQLFSLMIINAVFPDDVTFIALISA---CSHGGL-VDQGLILFKAMS 339 (461)
Q Consensus 275 ~~~~~-------~~~l~~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~---~~~~~~-~~~a~~~~~~~~ 339 (461)
|+... -..+-+..|.. -+..+=+.+|++....++. .......++.+ +-+.|. -++|+.+++.+.
T Consensus 329 p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il 407 (549)
T PF07079_consen 329 PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLIL 407 (549)
T ss_pred CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 42221 11222223311 1233345566666654432 11223333333 344455 888999998887
Q ss_pred hhcCCCC-CcchHHHHHH----HHhhcCCHH------HHHHHHHhCCCCc----hhhHHHHHHHH--HHhcCChHHHHHH
Q 038303 340 TVYEIVP-QMQHYACVVD----MYGRAGLLE------EAEAFIREMPIEA----EWSVWGALLNA--CRIHRNDEMFDRI 402 (461)
Q Consensus 340 ~~~~~~~-~~~~~~~l~~----~~~~~g~~~------~A~~~~~~~~~~p----~~~~~~~l~~~--~~~~~~~~~a~~~ 402 (461)
+ +.| |...-+.+.. .|..+=... .-...+++.++.| +...-|.|..| +..+|++..+.-.
T Consensus 408 ~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 408 Q---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred H---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 6 223 3333332221 222211111 1222334445554 34466777777 6789999999888
Q ss_pred HHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHH
Q 038303 403 RQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEI 440 (461)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 440 (461)
-..+.+..| ++.+|..++-++....++++|..++..+
T Consensus 485 s~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 485 SSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 777777666 8999999999999999999999999764
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.62 E-value=0.0025 Score=60.34 Aligned_cols=63 Identities=5% Similarity=0.007 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcC
Q 038303 381 SVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444 (461)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 444 (461)
..+.++.-.....|++++|...++++.+..| +...|..+++++...|+.++|.+.+++..+..
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4455444444556777777777777777665 46677777777777777777777777665543
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.60 E-value=0.00012 Score=48.30 Aligned_cols=54 Identities=2% Similarity=0.116 Sum_probs=41.2
Q ss_pred HhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcC
Q 038303 391 RIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444 (461)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 444 (461)
...|++++|++.++++.+..|.+..++..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 356778888888888888888888888888888888888888888887766543
No 182
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.60 E-value=0.00064 Score=54.54 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=77.7
Q ss_pred HHHHHHc--cCCChhhHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcC-------------
Q 038303 266 IQVFNML--AYKDKISWSTVISGLAM-----NGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG------------- 325 (461)
Q Consensus 266 ~~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~------------- 325 (461)
...|+.. ..++..+|..++..|.+ .|..+=....+..|.+.|+.-|..+|+.|++.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 45677788888887764 467888888899999999999999999999987652
Q ss_pred ---CChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCC
Q 038303 326 ---GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363 (461)
Q Consensus 326 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 363 (461)
.+-+-|+++++.|.. .|+-||..++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 235678999999988 8999999999999999977654
No 183
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.59 E-value=0.0026 Score=51.04 Aligned_cols=129 Identities=10% Similarity=0.014 Sum_probs=77.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--HhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHH
Q 038303 277 KISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD--DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354 (461)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 354 (461)
...+..+...+...|++++|...+++..+....+. ...+..+...+.+.|++++|...+++... -.+.+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHH
Confidence 44566666777777888888888877776433322 24566666777777777777777777766 122234455555
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccC
Q 038303 355 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428 (461)
Q Consensus 355 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (461)
...+...|+...+..-++.. ...+++|.+.+++..+..|.+ |..++..+...|
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 66666666655444332221 112566777777777766665 444444444444
No 184
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.0042 Score=54.65 Aligned_cols=155 Identities=10% Similarity=0.009 Sum_probs=101.7
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHH--HHcCCChHHHHHHHHHhHhhcCCCCCcchHHH----------
Q 038303 286 GLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISA--CSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC---------- 353 (461)
Q Consensus 286 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---------- 353 (461)
++.-.|++++|...--...+.. ....+...+++ +-..++.+.|...|++..+ +.|+...-..
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHH
Confidence 4556778888777766665532 12334444443 3346777788777776654 3344221111
Q ss_pred ---HHHHHhhcCCHHHHHHHHHhC-CCCc-----hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038303 354 ---VVDMYGRAGLLEEAEAFIREM-PIEA-----EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424 (461)
Q Consensus 354 ---l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (461)
=..-..+.|++..|.+.+.+. .+.| +...|.....+..+.|+..+|+.-.+++...++.-...|..-+.++
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 122345678888888888877 4444 4444555555567888888888888888888887777888888888
Q ss_pred hccCChhhHHHHHHHHHHcCCc
Q 038303 425 AGADRWEDTNKIRDEIRRMGLK 446 (461)
Q Consensus 425 ~~~g~~~~A~~~~~~m~~~g~~ 446 (461)
...++|++|.+-+++..+..-.
T Consensus 332 l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhccc
Confidence 8888888888888887665443
No 185
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.56 E-value=0.0011 Score=57.72 Aligned_cols=130 Identities=7% Similarity=0.019 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC--CCCchhhHHHHHHHHH
Q 038303 313 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVWGALLNAC 390 (461)
Q Consensus 313 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~ 390 (461)
.+|..+++...+.+..+.|..+|.+..+.......+....++++ |...++.+.|.++|+.. ....+...|...+.-+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 46778888888888899999999999873333344443344443 33356777799999998 3445666788888888
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCh---hHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 038303 391 RIHRNDEMFDRIRQDLVNKKGVSV---GTFALMSNTFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 443 (461)
...++.+.|..+|++.....+... ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999998765544 68999999999999999999999998775
No 186
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.53 E-value=0.0031 Score=59.71 Aligned_cols=139 Identities=11% Similarity=0.004 Sum_probs=97.1
Q ss_pred CChhhHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCCCH-hHHHHHHHHHHcC--------CChHHHHHHHHHhHh
Q 038303 275 KDKISWSTVISGLAMN-----GCGRQALQLFSLMIINAVFPDD-VTFIALISACSHG--------GLVDQGLILFKAMST 340 (461)
Q Consensus 275 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~--------~~~~~a~~~~~~~~~ 340 (461)
.+...|...+++.... ++.++|..+|++..+. .|+. ..+..+..++... .++..+.+..+....
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4677888888775443 2367899999999884 5654 4444443333221 122333444443322
Q ss_pred hcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChh
Q 038303 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVG 415 (461)
Q Consensus 341 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 415 (461)
....+.+...|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|.+.++++.+..|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 1123445577877777777789999999999998 66788888888888999999999999999999998887763
No 187
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.49 E-value=0.0021 Score=45.61 Aligned_cols=80 Identities=16% Similarity=0.083 Sum_probs=62.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CCChhhHHHHHHHhhccc--------hhhhHHHHHHHHHhhcCCCCcch
Q 038303 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEA-EPNEATLVNVLSACSSIS--------ALSFGKYVHSYISTRYDLSVSNL 247 (461)
Q Consensus 177 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~~~l~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 247 (461)
-...|..+...+++.....+|+.+++.| + .|+..+|+.++.+.++.. ..-....+++.|.. .+++|+..
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~-i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~e 105 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNG-ITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDE 105 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHH
Confidence 3445666777799999999999999988 7 899999999998876653 34456677888887 77888888
Q ss_pred HHHHHHHHHHh
Q 038303 248 VGNAVINMYVK 258 (461)
Q Consensus 248 ~~~~li~~~~~ 258 (461)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 88888877654
No 188
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.48 E-value=0.00043 Score=46.37 Aligned_cols=58 Identities=5% Similarity=-0.036 Sum_probs=50.3
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcCC
Q 038303 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445 (461)
Q Consensus 388 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 445 (461)
..|.+.++++.|.++++.+....|.++..+...+.++.+.|++++|.+.+++..+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4577888999999999999998899999999999999999999999999998887654
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.46 E-value=0.034 Score=43.55 Aligned_cols=122 Identities=11% Similarity=0.001 Sum_probs=55.0
Q ss_pred CChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCC-----ChhhHHH
Q 038303 208 PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-----DKISWST 282 (461)
Q Consensus 208 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~ 282 (461)
|+...-..+..+....|+..+|...|.+... .-..-|....-.+.++....++...|...++++.+- .+.+.-.
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 3333333444444444444444444444444 223334444444555555555555555555544321 2233344
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHH
Q 038303 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL 332 (461)
Q Consensus 283 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 332 (461)
+.+.+...|++.+|..-|+..... -|+...-......+.++|+.+++.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 445555555555555555555542 333333222333344444444443
No 190
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.45 E-value=0.015 Score=44.66 Aligned_cols=93 Identities=10% Similarity=-0.004 Sum_probs=67.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHccC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCC
Q 038303 250 NAVINMYVKCGDVGIAIQVFNMLAY--K-DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326 (461)
Q Consensus 250 ~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 326 (461)
-.+...+...|++++|.++|+.+.. | +..-|-.|..++-..|++++|+..|.......+ -|+..+-.+..++...|
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcC
Confidence 4455556677888888888877653 3 455667777777778888888888888777553 35577777777888888
Q ss_pred ChHHHHHHHHHhHhhcC
Q 038303 327 LVDQGLILFKAMSTVYE 343 (461)
Q Consensus 327 ~~~~a~~~~~~~~~~~~ 343 (461)
+.+.|.+.|+......+
T Consensus 118 ~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 118 NVCYAIKALKAVVRICG 134 (157)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 88888888887766443
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.42 E-value=0.038 Score=43.28 Aligned_cols=129 Identities=6% Similarity=-0.039 Sum_probs=84.0
Q ss_pred CCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-C-----CCchhh
Q 038303 308 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-P-----IEAEWS 381 (461)
Q Consensus 308 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-----~~p~~~ 381 (461)
..|+...-..|..+....|++.+|...|++... .-+..|......+.++....+++..|...+++. . ..||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~- 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG- 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc-
Confidence 456666666677777777888888888777766 344556666777777777778888887777776 1 22332
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHH
Q 038303 382 VWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEI 440 (461)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 440 (461)
.-.+.+.+...|.+..|+..|+....--| ++..-......+.+.|+.++|..-+..+
T Consensus 163 -~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 163 -HLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred -hHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 33455567777888888888877776443 3344455555666777766665544444
No 192
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.41 E-value=0.0006 Score=44.87 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=23.2
Q ss_pred CCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 038303 325 GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 325 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
.|++++|+.+|+.+.. ..+-+...+..+..+|.+.|++++|.++++++
T Consensus 4 ~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp TTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455555555555544 22234444444555555555555555555555
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.41 E-value=0.0074 Score=44.48 Aligned_cols=92 Identities=16% Similarity=0.119 Sum_probs=61.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCH--hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHh
Q 038303 283 VISGLAMNGCGRQALQLFSLMIINAVFPDD--VTFIALISACSHGGLVDQGLILFKAMSTVYEIVP-QMQHYACVVDMYG 359 (461)
Q Consensus 283 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 359 (461)
+..++-..|+.++|+.+|++....|..... ..+-.+..++...|++++|..+++.....+.-.+ +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 445667788888888888888887766543 4555666778888888888888888876321100 2222223344667
Q ss_pred hcCCHHHHHHHHHhC
Q 038303 360 RAGLLEEAEAFIREM 374 (461)
Q Consensus 360 ~~g~~~~A~~~~~~~ 374 (461)
..|+.++|++.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 788888888877554
No 194
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.41 E-value=0.00088 Score=43.58 Aligned_cols=61 Identities=10% Similarity=-0.031 Sum_probs=38.2
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCh
Q 038303 354 VVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414 (461)
Q Consensus 354 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 414 (461)
+...+.+.|++++|.+.|++. ...| +...+..+..++...|++++|...++++.+..|.++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 345566677777777777776 3334 444555566667777777777777777777666553
No 195
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.40 E-value=0.035 Score=47.22 Aligned_cols=58 Identities=10% Similarity=0.078 Sum_probs=33.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHhHhhcCCC-CCcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 038303 317 ALISACSHGGLVDQGLILFKAMSTVYEIV-PQMQHYACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 317 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
.+.+-|.+.|.+..|..-++.+.++..-. ........++.+|.+.|..++|..+.+.+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34455666677777777777666532211 22344455666777777777776665543
No 196
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.39 E-value=0.0033 Score=50.26 Aligned_cols=62 Identities=11% Similarity=0.000 Sum_probs=30.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--HhHHHHHHHHHHcCCChHHHHHHHHHhHh
Q 038303 279 SWSTVISGLAMNGCGRQALQLFSLMIINAVFPD--DVTFIALISACSHGGLVDQGLILFKAMST 340 (461)
Q Consensus 279 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 340 (461)
.|..+...+...|++++|+..+++.......|. ..++..+...+...|++++|+..++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555555555555544321111 12444455555555555555555555544
No 197
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=97.38 E-value=0.028 Score=41.16 Aligned_cols=141 Identities=12% Similarity=0.184 Sum_probs=91.0
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHH
Q 038303 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366 (461)
Q Consensus 287 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 366 (461)
+.-.|..++..+++.+.... .+..-++.+|--....-+-+...++++.+-+.+.+.|-. ....++.+|.+.|.
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNK--- 84 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcc---
Confidence 34567888888888888764 355667777766666666666677777765533332221 12334555555443
Q ss_pred HHHHHHhCCCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcCCc
Q 038303 367 AEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446 (461)
Q Consensus 367 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 446 (461)
+.......+......|+-+...++...+.....+++.....++.+|.+.|+..++.+++.+.-++|++
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33345666777889999999999999998877888999999999999999999999999999999985
No 198
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.37 E-value=0.004 Score=54.74 Aligned_cols=130 Identities=12% Similarity=-0.032 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHh---HhhcCCCC-CcchHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCchh
Q 038303 313 VTFIALISACSHGGLVDQGLILFKAM---STVYEIVP-QMQHYACVVDMYGRAGLLEEAEAFIREM-------P-IEAEW 380 (461)
Q Consensus 313 ~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~ 380 (461)
..|..|...|.-.|+++.|+...+.- .+.+|-+. ....+..+..+++-.|+++.|.+.++.. + .....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 44666666666678888887765432 12233322 2455667777888888888888877654 2 12344
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhh------cCCCChhHHHHHHHHHhccCChhhHHHHHHHHHH
Q 038303 381 SVWGALLNACRIHRNDEMFDRIRQDLVN------KKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442 (461)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 442 (461)
.++.+|..+|.-..+++.|+.++.+-.. .......++..|+.+|...|..++|+.+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4667777778888888888888776443 1234466888888888888888888887776544
No 199
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.06 Score=44.74 Aligned_cols=230 Identities=8% Similarity=-0.054 Sum_probs=112.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHh-hccc-hhhhHHHH-HHHHHhhcCCCCcchHHH
Q 038303 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSAC-SSIS-ALSFGKYV-HSYISTRYDLSVSNLVGN 250 (461)
Q Consensus 174 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~-~~~~-~~~~a~~~-~~~~~~~~~~~~~~~~~~ 250 (461)
...|+.-+..+++.+..++|..-+....+. ..||-. |...=..+ .+.| .+.-+.++ +.++....| ++ ++
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~l--D~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lg---np--qe 140 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNL--DQPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYLG---NP--QE 140 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccC--CCccee-eeeccccCCCCcCccccHHHHHHHHHHHHhcC---Cc--HH
Confidence 345666677788888888887766666543 222211 11000000 0111 12222222 222222112 11 14
Q ss_pred HHHHHHHhcCCHHHHHHHHHHccCC----------ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 038303 251 AVINMYVKCGDVGIAIQVFNMLAYK----------DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALIS 320 (461)
Q Consensus 251 ~li~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 320 (461)
.|.+.+.-...+++-...++.-..+ -...-+.++..+.-.|.+.-.+..+.+.++...+-++.....|.+
T Consensus 141 sLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr 220 (366)
T KOG2796|consen 141 SLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGR 220 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHH
Confidence 4444444333333333333322221 122344555666666777777777777777655556666667777
Q ss_pred HHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHH-----HHHHhhcCCHHHHHHHHHhCCCC--chhhHHHHHHHHHHhc
Q 038303 321 ACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV-----VDMYGRAGLLEEAEAFIREMPIE--AEWSVWGALLNACRIH 393 (461)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~l~~~~~~~ 393 (461)
.-.+.|+.+.|...|+...+..+ ..+-.+.+.+ ...|.-++++.+|...+.++... .++...|.-.-+..-.
T Consensus 221 ~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl 299 (366)
T KOG2796|consen 221 ISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL 299 (366)
T ss_pred HHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHH
Confidence 77777777777777776655222 2222222222 22344455666666666666222 1222222222223335
Q ss_pred CChHHHHHHHHHHhhcCCC
Q 038303 394 RNDEMFDRIRQDLVNKKGV 412 (461)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~ 412 (461)
|+...|++..+.+.+..|.
T Consensus 300 g~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 300 GKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHHHHHHHhccCCc
Confidence 6666676666666665554
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.26 E-value=0.0035 Score=53.68 Aligned_cols=96 Identities=9% Similarity=0.063 Sum_probs=41.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCch----hhHHHH
Q 038303 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQ----MQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE----WSVWGA 385 (461)
Q Consensus 315 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ 385 (461)
|...+....+.|++++|...|+.+.+. . |+ ...+-.+...|...|++++|...|+.+ ...|+ ...+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--Y-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--C-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 333333334445555555555555541 1 22 123344445555555555555555544 11111 112222
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 038303 386 LLNACRIHRNDEMFDRIRQDLVNKKGVS 413 (461)
Q Consensus 386 l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 413 (461)
+...+...|+.+.|...++.+++..|.+
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 2333444455555555555555444443
No 201
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.26 E-value=0.012 Score=43.44 Aligned_cols=104 Identities=8% Similarity=0.012 Sum_probs=51.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCC--hhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCC-CcchHHHHHHHHH
Q 038303 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPN--EATLVNVLSACSSISALSFGKYVHSYISTRYDLS-VSNLVGNAVINMY 256 (461)
Q Consensus 180 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~ 256 (461)
+..++-..|+.++|+.+|++....| .... ...+..+...+...|++++|..+++.......-. .+......+..++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~g-L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAG-LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3455667788888888888887765 4433 2234444445555566666666665554421110 0111112222344
Q ss_pred HhcCCHHHHHHHHHHccCCChhhHHHHH
Q 038303 257 VKCGDVGIAIQVFNMLAYKDKISWSTVI 284 (461)
Q Consensus 257 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~ 284 (461)
...|+.++|.+.+-....++...|..-|
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~ 113 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAI 113 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555443333333333333
No 202
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.26 E-value=0.064 Score=44.30 Aligned_cols=165 Identities=10% Similarity=0.015 Sum_probs=90.8
Q ss_pred HHHHHhcCCHHHHHHHHHHccC--CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcC-
Q 038303 253 INMYVKCGDVGIAIQVFNMLAY--KD----KISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG- 325 (461)
Q Consensus 253 i~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~- 325 (461)
...+...|++++|.+.|+.+.. |+ ....-.++.++.+.|+++.|...++++.+.-..-....+...+.+.+..
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3445567777777777777663 21 2334456667777788888888888877642221122233222222111
Q ss_pred ------------CChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCchhhHHHHHHHHHHhc
Q 038303 326 ------------GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 393 (461)
Q Consensus 326 ------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 393 (461)
+....|.. .+..++.-|=.+....+|...+..+...--...+ .+..-|.+.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~----------------~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~-~ia~~Y~~~ 154 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIE----------------EFEELIKRYPNSEYAEEAKKRLAELRNRLAEHEL-YIARFYYKR 154 (203)
T ss_dssp HHHHHH-TT---HHHHHHHH----------------HHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHCT
T ss_pred hCccchhcccChHHHHHHHH----------------HHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHc
Confidence 11122222 3334444555555555565555544211111111 134458899
Q ss_pred CChHHHHHHHHHHhhcCCCCh---hHHHHHHHHHhccCChhhHH
Q 038303 394 RNDEMFDRIRQDLVNKKGVSV---GTFALMSNTFAGADRWEDTN 434 (461)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~ 434 (461)
|.+..|..-++.+++..|.+. .+...++.+|.+.|..+.|.
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999999999877764 45678888899999887544
No 203
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.24 E-value=0.1 Score=46.75 Aligned_cols=161 Identities=15% Similarity=0.047 Sum_probs=96.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHccCC-------ChhhHHHHHHHHHh---cCChHHHHHHHHHHHhcCCCCCHhHHHHHH
Q 038303 250 NAVINMYVKCGDVGIAIQVFNMLAYK-------DKISWSTVISGLAM---NGCGRQALQLFSLMIINAVFPDDVTFIALI 319 (461)
Q Consensus 250 ~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 319 (461)
-.++-+|-...+++...++.+.+... ....-....-++.+ .|+.++|+.++..+....-.++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555677777777777777777653 11112233345556 788888888888866666677778887777
Q ss_pred HHHHc---------CCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHH----HHHHHH---HhC-------CC
Q 038303 320 SACSH---------GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE----EAEAFI---REM-------PI 376 (461)
Q Consensus 320 ~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~-------~~ 376 (461)
+.|-. ....++|+..|.+.-+ +.|+...--.++..+.-.|... +..++- ..+ ..
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 66532 2246677777776543 3454333222233333333322 222222 111 11
Q ss_pred CchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 038303 377 EAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVS 413 (461)
Q Consensus 377 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 413 (461)
..+--.+.+++.++.-.|+.+.|.+..+++....||.
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 2344456677888888999999999999998877665
No 204
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.19 E-value=0.0015 Score=50.81 Aligned_cols=71 Identities=13% Similarity=0.145 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHH-----HHcCCccccCcc
Q 038303 382 VWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEI-----RRMGLKKKTGCS 452 (461)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-----~~~g~~~~~~~~ 452 (461)
....++..+...|+++.|...++.+....|-+...|..++.+|...|+..+|.+.++++ .+.|+.|++.+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34556666788999999999999999999999999999999999999999999999887 346888887643
No 205
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.027 Score=46.64 Aligned_cols=140 Identities=11% Similarity=0.028 Sum_probs=98.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHH---
Q 038303 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG--- 249 (461)
Q Consensus 173 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--- 249 (461)
-..+.+.++.++.-.|.+.-....+++.++.. .+.++.....+.....+.|+.+.|...|+...+ .....+....
T Consensus 176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~-~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek-~~~kL~~~q~~~~ 253 (366)
T KOG2796|consen 176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKYY-PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK-VTQKLDGLQGKIM 253 (366)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHhC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH-HHhhhhccchhHH
Confidence 34556778888888899999999999998865 566777788888888899999999999997766 3333333333
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHccCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHH
Q 038303 250 --NAVINMYVKCGDVGIAIQVFNMLAYK---DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFI 316 (461)
Q Consensus 250 --~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 316 (461)
......|.-.+++..|...+.++... |+..-|.-.-++.-.|+..+|++.++.|.+. .|...+-+
T Consensus 254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 254 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 33334556677788888888777744 4444555555555678888888888888874 44444444
No 206
>PRK15331 chaperone protein SicA; Provisional
Probab=97.13 E-value=0.0045 Score=47.70 Aligned_cols=83 Identities=11% Similarity=0.049 Sum_probs=40.6
Q ss_pred hcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHH
Q 038303 360 RAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIR 437 (461)
Q Consensus 360 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 437 (461)
..|++++|..+|+-+ -..| +..-|..|..++-..++++.|+..|.......+.|+..+...+.+|...|+.+.|...|
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f 128 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCF 128 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHH
Confidence 445555555555544 1111 22223333333445555555555555555544555555555555555555555555555
Q ss_pred HHHHH
Q 038303 438 DEIRR 442 (461)
Q Consensus 438 ~~m~~ 442 (461)
+...+
T Consensus 129 ~~a~~ 133 (165)
T PRK15331 129 ELVNE 133 (165)
T ss_pred HHHHh
Confidence 55444
No 207
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.11 E-value=0.0069 Score=45.14 Aligned_cols=82 Identities=15% Similarity=0.160 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHH---------------HhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhc
Q 038303 278 ISWSTVISGLAMNGCGRQALQLFSLM---------------IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 342 (461)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~a~~~~~~m---------------~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 342 (461)
.++..++.++++.|+.+....+++.. ......|+..+..+++.+|+..+++..|.++++...+..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 34444455555555555544444332 122356778888888888888888888888888888877
Q ss_pred CCCCCcchHHHHHHHHh
Q 038303 343 EIVPQMQHYACVVDMYG 359 (461)
Q Consensus 343 ~~~~~~~~~~~l~~~~~ 359 (461)
+++.+..+|..|++-..
T Consensus 83 ~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 87777778887776543
No 208
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.11 E-value=0.0018 Score=42.69 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=40.8
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCC
Q 038303 348 MQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHR-NDEMFDRIRQDLVNKKG 411 (461)
Q Consensus 348 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~ 411 (461)
...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|+..+++.++..|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 345666666677777777777777766 2223 4445666666667776 57777777777766544
No 209
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.05 E-value=0.0041 Score=54.66 Aligned_cols=260 Identities=10% Similarity=-0.012 Sum_probs=152.5
Q ss_pred hHHHHHH--HHHhhCCHHHHHHHHHHHHHhCCCccH----HHHHHHHHHHHhcCCHHHHHHHHhhC-------C--CCCc
Q 038303 12 TFTQALK--ACSLAHPHQKALEIHAHVIEYGHLHDI----FIQNSLLHFYVTVKDIFSAHQIFNSV-------V--FPDV 76 (461)
Q Consensus 12 ~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~-------~--~~~~ 76 (461)
.|...+. -+++.|+......+|+..++.|.. |. ..|..|-.+|.-.+++++|++.-..- . .-..
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEA 95 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEA 95 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccc
Confidence 3444443 488999999999999999998854 33 36677777888889999998875422 0 1122
Q ss_pred eeHHHHHHHHHcCCChHHHHHHHh-cC------CC-CCCchhHHHHHHHhcccch--------------------hHHHH
Q 038303 77 VSWTTIISGLSKCGFHKEAIDMFC-GI------DV-KPNANTLVSVLSACSSLVS--------------------HKLGK 128 (461)
Q Consensus 77 ~~~~~li~~~~~~~~~~~a~~~~~-~m------~~-~p~~~~~~~ll~~~~~~~~--------------------~~~a~ 128 (461)
.+...|.+.+--.|.+++|+-+.. .+ |- ......+..+...|...|+ ++.|.
T Consensus 96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av 175 (639)
T KOG1130|consen 96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAV 175 (639)
T ss_pred cccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHH
Confidence 333445555556677777765432 22 11 1123334444444433222 33344
Q ss_pred HHHHHHHhh----cCC-CChhHHHHHHHHHHHcCChhhHHHHHhcCCC---------CchhHHHHHHHHHHhcCChHHHH
Q 038303 129 AIHAHSLRN----LNE-NNIILDNAILDFYIRCGSLASCGYLFVKMPK---------RNVVSWTTMIGGYAERGFCKEAV 194 (461)
Q Consensus 129 ~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~ 194 (461)
++|.+-++. |-. .--..|..|.+.|.-.|+++.|+...+.-.. .....+..+.+++.-.|+++.|.
T Consensus 176 ~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ 255 (639)
T KOG1130|consen 176 KFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAI 255 (639)
T ss_pred HHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHH
Confidence 444433221 100 0123345555566667888888766544321 23346777888888889999998
Q ss_pred HHHHHHH----hcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhh----cCCCCcchHHHHHHHHHHhcCCHHHHH
Q 038303 195 SVFQEME----KTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTR----YDLSVSNLVGNAVINMYVKCGDVGIAI 266 (461)
Q Consensus 195 ~~~~~m~----~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~a~ 266 (461)
+.|+... +.|+-.....+.-++-+.|.-..+++.|+.++..-... ....-....+-+|..+|...|..++|.
T Consensus 256 ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl 335 (639)
T KOG1130|consen 256 EHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKAL 335 (639)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHH
Confidence 8887653 33323334445556666666677777777766543321 112223446677888888888888887
Q ss_pred HHHHHc
Q 038303 267 QVFNML 272 (461)
Q Consensus 267 ~~~~~~ 272 (461)
.+.+.-
T Consensus 336 ~fae~h 341 (639)
T KOG1130|consen 336 YFAELH 341 (639)
T ss_pred HHHHHH
Confidence 766543
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.01 E-value=0.18 Score=47.54 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhCCHH--HHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 038303 13 FTQALKACSLAHPHQ--KALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71 (461)
Q Consensus 13 ~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 71 (461)
++..=++|.+-++.. +...-++++++.|-.|+... +...++-.|++.+|.++|.+-
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence 344445555555433 23333455666676677654 445667788888888887654
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.92 E-value=0.019 Score=49.24 Aligned_cols=93 Identities=15% Similarity=0.112 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH----hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCC-CCCcchHHHH
Q 038303 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDD----VTFIALISACSHGGLVDQGLILFKAMSTVYEI-VPQMQHYACV 354 (461)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l 354 (461)
|...+..+.+.|++++|...|+.+.+.- |+. ..+-.+..+|...|++++|...|+.+.+...- +.....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3333333344455555555555555432 222 24444445555555555555555555441111 1112223333
Q ss_pred HHHHhhcCCHHHHHHHHHhC
Q 038303 355 VDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 355 ~~~~~~~g~~~~A~~~~~~~ 374 (461)
...+...|+.++|...+++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 44444555555555555544
No 212
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.92 E-value=0.013 Score=47.32 Aligned_cols=88 Identities=7% Similarity=0.131 Sum_probs=60.7
Q ss_pred CchhHHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhcc----------------chhhhHH
Q 038303 172 RNVVSWTTMIGGYAE-----RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI----------------SALSFGK 230 (461)
Q Consensus 172 ~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~----------------~~~~~a~ 230 (461)
.+..+|..++..|.+ .|..+=....+..|.+-| +.-|..+|+.+++.+=+. .+-+-+.
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efg-v~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFG-VEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcC-CcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 556666666666654 356666677777777777 888888888888775432 3455677
Q ss_pred HHHHHHHhhcCCCCcchHHHHHHHHHHhcCC
Q 038303 231 YVHSYISTRYDLSVSNLVGNAVINMYVKCGD 261 (461)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 261 (461)
+++++|.. .|+-||..++..|++.+++.+.
T Consensus 124 ~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 77777777 7777777777777777765544
No 213
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.90 E-value=0.32 Score=46.44 Aligned_cols=204 Identities=11% Similarity=0.015 Sum_probs=111.8
Q ss_pred CCChhHHHHHHHHHHHcCChhhHHHHHhcCCC-CchhHH------------HHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 038303 140 ENNIILDNAILDFYIRCGSLASCGYLFVKMPK-RNVVSW------------TTMIGGYAERGFCKEAVSVFQEMEKTKEA 206 (461)
Q Consensus 140 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~------------~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 206 (461)
.|.+..|..+.......-.++.|+..|-+... +.+..- .+=|.+ --|++++|.++|-+|.+..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh--
Confidence 46677777777776666677777777666553 221111 111112 2367778877777775542
Q ss_pred CCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHH
Q 038303 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISG 286 (461)
Q Consensus 207 ~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~ 286 (461)
..+....+.|++-.+.++++.-........-...++.+...+.....+++|.+.|..-... ...+.+
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e~~~ec 831 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----ENQIEC 831 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----HhHHHH
Confidence 2344455556665555554431110011111235566666666666777777666544321 123444
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHH
Q 038303 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366 (461)
Q Consensus 287 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 366 (461)
+.+...+++-+.+.+.+ +-+....-.+..++.+.|.-++|.+.|-+-.. |. .-+..|...++|.+
T Consensus 832 ly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-----pk-----aAv~tCv~LnQW~~ 896 (1189)
T KOG2041|consen 832 LYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL-----PK-----AAVHTCVELNQWGE 896 (1189)
T ss_pred HHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC-----cH-----HHHHHHHHHHHHHH
Confidence 55555555544444433 22445555666777788888877776633221 22 23566777778888
Q ss_pred HHHHHHhCC
Q 038303 367 AEAFIREMP 375 (461)
Q Consensus 367 A~~~~~~~~ 375 (461)
|.++-++..
T Consensus 897 avelaq~~~ 905 (1189)
T KOG2041|consen 897 AVELAQRFQ 905 (1189)
T ss_pred HHHHHHhcc
Confidence 888777663
No 214
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.89 E-value=0.00087 Score=36.70 Aligned_cols=33 Identities=6% Similarity=0.190 Sum_probs=30.2
Q ss_pred HHHHhhcCCCChhHHHHHHHHHhccCChhhHHH
Q 038303 403 RQDLVNKKGVSVGTFALMSNTFAGADRWEDTNK 435 (461)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 435 (461)
+++.++..|.++.+|..++..|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678888999999999999999999999999863
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.83 E-value=0.0034 Score=42.60 Aligned_cols=61 Identities=8% Similarity=0.071 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhc---CC----CChhHHHHHHHHHhccCChhhHHHHHHHHHH
Q 038303 382 VWGALLNACRIHRNDEMFDRIRQDLVNK---KG----VSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442 (461)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 442 (461)
+++.+...|...|++++|+..+++..+. .+ ....++..++.+|...|++++|++.+++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5566666677888888888888777752 11 1255788888888888998888888887654
No 216
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.05 Score=46.34 Aligned_cols=102 Identities=12% Similarity=0.021 Sum_probs=71.8
Q ss_pred CHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhc---CCHHHHHHHHHhC-CCCchhh-HHHH
Q 038303 311 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA---GLLEEAEAFIREM-PIEAEWS-VWGA 385 (461)
Q Consensus 311 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~-~~~p~~~-~~~~ 385 (461)
|...|..|...|...|+++.|..-|....+. -++++..+..+.+++... ....++..+|+++ ...|+.. ....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 5678888888888888888888888888773 335566666666665433 2355777888887 4445444 4444
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCh
Q 038303 386 LLNACRIHRNDEMFDRIRQDLVNKKGVSV 414 (461)
Q Consensus 386 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 414 (461)
|...+...|++.+|...|+.|.+..|++.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 44558888888888888888888776654
No 217
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.76 E-value=0.0077 Score=54.44 Aligned_cols=97 Identities=9% Similarity=0.049 Sum_probs=64.0
Q ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCchhh----HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHH
Q 038303 347 QMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS----VWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421 (461)
Q Consensus 347 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 421 (461)
+...++.+..+|.+.|++++|+..|++. .+.|+.. +|..+..+|...|+.++|+..++++++..++ .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 4567777888888888888888888875 5566643 4777778888888888888888888875322 222111
Q ss_pred H--HHhccCChhhHHHHHHHHHHcCCc
Q 038303 422 N--TFAGADRWEDTNKIRDEIRRMGLK 446 (461)
Q Consensus 422 ~--~~~~~g~~~~A~~~~~~m~~~g~~ 446 (461)
. .+....+.++..++++...+-|..
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1 112233445666777777776654
No 218
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.66 E-value=0.43 Score=42.32 Aligned_cols=288 Identities=12% Similarity=0.063 Sum_probs=156.6
Q ss_pred eHHHHHHHHHc--CCChHHHHHHHhcC--CCCCCchhHHHHHHH--hcccchhHHHHHHHHHHHhhcCCCChhHHHHHHH
Q 038303 78 SWTTIISGLSK--CGFHKEAIDMFCGI--DVKPNANTLVSVLSA--CSSLVSHKLGKAIHAHSLRNLNENNIILDNAILD 151 (461)
Q Consensus 78 ~~~~li~~~~~--~~~~~~a~~~~~~m--~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 151 (461)
.|..|-.++.. .|+-..|.+.-.+. -+.-|......++.+ ..-.|+.+.|.+-|+.|... ++.-.--...|.-
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyl 162 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYL 162 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHH
Confidence 45555555543 46777777776665 344566666666655 33568888888888888763 1101111122333
Q ss_pred HHHHcCChhhHHHHHhcCCC--C-chhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhH--HHHHHHhh---cc
Q 038303 152 FYIRCGSLASCGYLFVKMPK--R-NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATL--VNVLSACS---SI 223 (461)
Q Consensus 152 ~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~~~l~~~~---~~ 223 (461)
.--+.|+.+.|..+-++.-. | -.-.+...+...+..|+|+.|+++++.-....-+.++..-- ..++.+-. -.
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 33466777777777666543 2 23467778888888999999998888776654344554322 12222211 01
Q ss_pred chhhhHHHHHHHHHhhcCCCCcchHH-HHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 038303 224 SALSFGKYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSL 302 (461)
Q Consensus 224 ~~~~~a~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 302 (461)
.+...|...-.+. ..+.|+..-- -.-..++.+.|++.++-.+++.+-+..+..--..+....+.|+ .++.-+++
T Consensus 243 adp~~Ar~~A~~a---~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gd--ta~dRlkR 317 (531)
T COG3898 243 ADPASARDDALEA---NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGD--TALDRLKR 317 (531)
T ss_pred CChHHHHHHHHHH---hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCC--cHHHHHHH
Confidence 1233333332222 3344443321 2234567777888877777777764322222222233344444 23333333
Q ss_pred HHh-cCCCCCH-hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHh-hcCCHHHHHHHHHhC
Q 038303 303 MII-NAVFPDD-VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG-RAGLLEEAEAFIREM 374 (461)
Q Consensus 303 m~~-~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 374 (461)
... ..++||. .+...+.++-...|++..|..--+.... ..|....|..|.+.-. ..|+-.++..++.+.
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 221 1134443 5555666666777777777665554433 4566666666655443 347777777777666
No 219
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.65 E-value=0.14 Score=42.38 Aligned_cols=85 Identities=14% Similarity=0.162 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCC-cchHHHHHHHH
Q 038303 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ-MQHYACVVDMY 358 (461)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 358 (461)
+..++.-|-...-..+|...+..+.+. -...--.+...|.+.|.+..|..-++.+.++..-.+. ......++.+|
T Consensus 113 ~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y 188 (203)
T PF13525_consen 113 FEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAY 188 (203)
T ss_dssp HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 344455555555556665555555432 0111123556677888888888888887773211111 23455677778
Q ss_pred hhcCCHHHHH
Q 038303 359 GRAGLLEEAE 368 (461)
Q Consensus 359 ~~~g~~~~A~ 368 (461)
.+.|..+.|.
T Consensus 189 ~~l~~~~~a~ 198 (203)
T PF13525_consen 189 YKLGLKQAAD 198 (203)
T ss_dssp HHTT-HHHHH
T ss_pred HHhCChHHHH
Confidence 8887777443
No 220
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.65 E-value=0.49 Score=42.81 Aligned_cols=128 Identities=9% Similarity=0.068 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHhHhhcC-CCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCchhhHH-HHHHHH
Q 038303 313 VTFIALISACSHGGLVDQGLILFKAMSTVYE-IVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVW-GALLNA 389 (461)
Q Consensus 313 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~ 389 (461)
..|...+.+-.+..-++.|..+|-+..+ .+ ..+++.++++++..++ .|+...|.++|+-- ..-||...| +-.+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk-~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRK-EGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhc-cCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4566777777788889999999999988 56 6789999999998775 58899999999865 444666555 445556
Q ss_pred HHhcCChHHHHHHHHHHhhcCCCC--hhHHHHHHHHHhccCChhhHHHHHHHHHH
Q 038303 390 CRIHRNDEMFDRIRQDLVNKKGVS--VGTFALMSNTFAGADRWEDTNKIRDEIRR 442 (461)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 442 (461)
+...++-+.|..+|+..++....+ ...|..++.--..-|+...|..+=++|.+
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 778899999999999877644333 56899999998999999888877777654
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.53 E-value=0.0077 Score=40.79 Aligned_cols=59 Identities=14% Similarity=0.093 Sum_probs=30.3
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCch-hhHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 038303 350 HYACVVDMYGRAGLLEEAEAFIREM-------P-IEAE-WSVWGALLNACRIHRNDEMFDRIRQDLVN 408 (461)
Q Consensus 350 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 408 (461)
+++.+...|...|++++|+..|++. + ..|+ ..++..+...+...|++++|++.+++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444555555555555555555444 1 1122 33455555556666666666666666543
No 222
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.52 E-value=0.54 Score=41.76 Aligned_cols=277 Identities=12% Similarity=0.049 Sum_probs=162.9
Q ss_pred cCChhhHHHHHhcCCC---CchhHHHHHHHH--HHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHH
Q 038303 156 CGSLASCGYLFVKMPK---RNVVSWTTMIGG--YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGK 230 (461)
Q Consensus 156 ~g~~~~a~~~~~~~~~---~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~ 230 (461)
.|+-..|.++-.+..+ .|....-.++.+ -.-.|+++.|.+-|+.|.... .--.--...+.-..-+.|..+.|.
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP--EtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP--ETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh--HHHHHhHHHHHHHHHhcccHHHHH
Confidence 4566666655544432 344444444432 334678888888888886521 111112233333345567777777
Q ss_pred HHHHHHHhhcCCCCc-chHHHHHHHHHHhcCCHHHHHHHHHHcc-----CCChh--hHHHHHHHHH---hcCChHHHHHH
Q 038303 231 YVHSYISTRYDLSVS-NLVGNAVINMYVKCGDVGIAIQVFNMLA-----YKDKI--SWSTVISGLA---MNGCGRQALQL 299 (461)
Q Consensus 231 ~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~-----~~~~~--~~~~l~~~~~---~~~~~~~a~~~ 299 (461)
++-+.... ..|. ......++...+..|+++.|+++++.-. +++.. .--.|+.+-+ -.-+...|...
T Consensus 175 ~yAe~Aa~---~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 175 HYAERAAE---KAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHh---hccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 77666644 2232 3456777888888888888888886544 23321 1122222211 12235555555
Q ss_pred HHHHHhcCCCCCHhH-HHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC----
Q 038303 300 FSLMIINAVFPDDVT-FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM---- 374 (461)
Q Consensus 300 ~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 374 (461)
-.+..+ +.||... -.....++.+.|+..++-.+++.+-+ ..|.+.++...+ +.+.|+ .+..-+++.
T Consensus 252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~lY~--~ar~gd--ta~dRlkRa~~L~ 322 (531)
T COG3898 252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALLYV--RARSGD--TALDRLKRAKKLE 322 (531)
T ss_pred HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHHHH--HhcCCC--cHHHHHHHHHHHH
Confidence 554444 5666533 33345678899999999999999866 345555543332 334454 333333332
Q ss_pred CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhcc-CChhhHHHHHHHHHHcCCcc
Q 038303 375 PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA-DRWEDTNKIRDEIRRMGLKK 447 (461)
Q Consensus 375 ~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~~ 447 (461)
..+| +..+.-.+..+....|++..|..-.+...+..|. .+.|..|.+.-... |+-+++...+-+..+..-.|
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 2333 4445566677778889999998888877766654 55788888876554 99999999887776654433
No 223
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.57 Score=41.90 Aligned_cols=148 Identities=9% Similarity=-0.083 Sum_probs=85.0
Q ss_pred hhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHH--HHHhcCCHHHHHHHHHHccCCChhh---------------HHH
Q 038303 220 CSSISALSFGKYVHSYISTRYDLSVSNLVGNAVIN--MYVKCGDVGIAIQVFNMLAYKDKIS---------------WST 282 (461)
Q Consensus 220 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~~~~~---------------~~~ 282 (461)
+.-.++.++|..+-..+.+...... +..+++ ++.-.++.+.|...|++...-++.. +..
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~~n~----~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDATNA----EALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhcccchhHHHHHHHHHhcccchh----HHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHh
Confidence 4455677777766666555111111 122222 2334567777777777766432221 222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc---CCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCC-cchHHHHHHHH
Q 038303 283 VISGLAMNGCGRQALQLFSLMIIN---AVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ-MQHYACVVDMY 358 (461)
Q Consensus 283 l~~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 358 (461)
-..-..+.|++.+|.+.|.+.+.. ...|+...|........+.|+..+|+.--+.... +.|. ...|..-..++
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCH 331 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHH
Confidence 233456778888888888887753 2344555566666667778888888877776655 2221 22333334455
Q ss_pred hhcCCHHHHHHHHHhC
Q 038303 359 GRAGLLEEAEAFIREM 374 (461)
Q Consensus 359 ~~~g~~~~A~~~~~~~ 374 (461)
.-.++|++|.+-++..
T Consensus 332 l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5667788888877766
No 224
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.49 E-value=0.089 Score=40.79 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHh----hcCCCCCcch
Q 038303 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST----VYEIVPQMQH 350 (461)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 350 (461)
...++..+...|++++|..+++.+....+ -+...|..+|.+|...|+...|.+.|+.+.+ ..|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44455566667777777777777776532 2556777777777777777777777766633 2466666554
No 225
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.47 E-value=0.019 Score=38.24 Aligned_cols=59 Identities=10% Similarity=-0.014 Sum_probs=30.3
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCch-hhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChh
Q 038303 357 MYGRAGLLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVG 415 (461)
Q Consensus 357 ~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 415 (461)
.|.+.+++++|.++++++ ...|+ ...+......+...|++++|.+.++...+..|.++.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 445555556665555555 32232 223333444455566666666666666655554443
No 226
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.47 E-value=0.041 Score=41.02 Aligned_cols=80 Identities=9% Similarity=0.121 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHh--------------cCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhc
Q 038303 175 VSWTTMIGGYAERGFCKEAVSVFQEMEK--------------TKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240 (461)
Q Consensus 175 ~~~~~li~~~~~~~~~~~a~~~~~~m~~--------------~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~ 240 (461)
.++..+|.++++.|+.+....+++..-. .....|+..+..+++.+++..+++..|.++.+.+.+..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 3455555555666665555555544311 11134555555555555555555555555555555555
Q ss_pred CCCCcchHHHHHHH
Q 038303 241 DLSVSNLVGNAVIN 254 (461)
Q Consensus 241 ~~~~~~~~~~~li~ 254 (461)
+++.+..+|..|++
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 55555555555444
No 227
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.44 E-value=0.0092 Score=35.01 Aligned_cols=41 Identities=15% Similarity=0.192 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHH
Q 038303 382 VWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSN 422 (461)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 422 (461)
++..+..+|...|++++|++.++++++..|.++..+..++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 45667777888888888888888888888888888777654
No 228
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.26 E-value=1.7 Score=44.61 Aligned_cols=114 Identities=13% Similarity=0.172 Sum_probs=65.5
Q ss_pred CCCHhHHHHHHHH----HHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCchhhH--
Q 038303 309 FPDDVTFIALISA----CSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV-- 382 (461)
Q Consensus 309 ~p~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~-- 382 (461)
+|+...+..+..+ +...+.+++|.-.|+..-+ ...-+.+|..+|+|.+|+.+..++....+...
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~ 1001 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVIL 1001 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHH
Confidence 4666655555544 3446777777777665432 12346777788888888888888744333332
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHH
Q 038303 383 WGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDE 439 (461)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 439 (461)
-..|..-+...++.-+|-++..+..+. ....+..|++...|++|.++...
T Consensus 1002 a~~L~s~L~e~~kh~eAa~il~e~~sd-------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1002 AEELVSRLVEQRKHYEAAKILLEYLSD-------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHHcccchhHHHHHHHHhcC-------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 244555577777777776666665432 12222334444456666555433
No 229
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.58 Score=38.73 Aligned_cols=46 Identities=9% Similarity=0.103 Sum_probs=21.7
Q ss_pred HHhcCChHHHHHHHHHHhh----cCCCChhHHHHHHHHHhccCChhhHHHH
Q 038303 390 CRIHRNDEMFDRIRQDLVN----KKGVSVGTFALMSNTFAGADRWEDTNKI 436 (461)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 436 (461)
+.-..++..|+..++.-.+ ..+.+..+...|+.+| ..|+.+++.++
T Consensus 200 ~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 200 YLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 3344455555555555332 2233444555555544 44555555443
No 230
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.17 E-value=0.93 Score=40.83 Aligned_cols=71 Identities=11% Similarity=0.007 Sum_probs=41.0
Q ss_pred HHHHHHHHcCChhhHHHHHhcCCCC-ch------hHHHHHHHHHHh---cCChHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 038303 148 AILDFYIRCGSLASCGYLFVKMPKR-NV------VSWTTMIGGYAE---RGFCKEAVSVFQEMEKTKEAEPNEATLVNVL 217 (461)
Q Consensus 148 ~l~~~~~~~g~~~~a~~~~~~~~~~-~~------~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l 217 (461)
.++-.|-...+++..+++.+.+... +. ..--...-++-+ .|+.++|+.++..+.... ..+++.|+..+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD-ENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-CCCChHHHHHHH
Confidence 3444566777777777777777652 11 111122334445 677777777777754444 556666665555
Q ss_pred HH
Q 038303 218 SA 219 (461)
Q Consensus 218 ~~ 219 (461)
..
T Consensus 225 RI 226 (374)
T PF13281_consen 225 RI 226 (374)
T ss_pred HH
Confidence 44
No 231
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.14 E-value=1 Score=40.98 Aligned_cols=68 Identities=18% Similarity=0.150 Sum_probs=47.3
Q ss_pred HHhhCCHHHHHHHHHHHHHh--CCCc------------cHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CCce
Q 038303 20 CSLAHPHQKALEIHAHVIEY--GHLH------------DIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--------PDVV 77 (461)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~~ 77 (461)
+.+.+.+..|.+.+....+. +..| |...-+..++.+...|++.+++.+++++.+ -++.
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 34778899999998887765 3222 222335566778889999999999988822 4777
Q ss_pred eHHHHHHHHH
Q 038303 78 SWTTIISGLS 87 (461)
Q Consensus 78 ~~~~li~~~~ 87 (461)
+||.++-.+.
T Consensus 169 ~yd~~vlmls 178 (549)
T PF07079_consen 169 MYDRAVLMLS 178 (549)
T ss_pred HHHHHHHHHh
Confidence 8887554443
No 232
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.13 E-value=1.2 Score=41.92 Aligned_cols=84 Identities=10% Similarity=0.040 Sum_probs=34.9
Q ss_pred cCCChHHHHHHHhcC--CCCCCchhHHHHHHHh-cccchhHHHHHHHHHHHhh-cCC-CChhHHHHHHHHHHHcCChhhH
Q 038303 88 KCGFHKEAIDMFCGI--DVKPNANTLVSVLSAC-SSLVSHKLGKAIHAHSLRN-LNE-NNIILDNAILDFYIRCGSLASC 162 (461)
Q Consensus 88 ~~~~~~~a~~~~~~m--~~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a 162 (461)
+.|..+.+.++|++- +++-+...|...+.-+ ...|+.+.....|+.++.. |.. .+...|...+..-...+++...
T Consensus 91 klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v 170 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRV 170 (577)
T ss_pred HhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHH
Confidence 344555555555554 4433333333333322 2334444444444444432 111 1223334444444444444444
Q ss_pred HHHHhcCCC
Q 038303 163 GYLFVKMPK 171 (461)
Q Consensus 163 ~~~~~~~~~ 171 (461)
..+++++.+
T Consensus 171 ~~iyeRile 179 (577)
T KOG1258|consen 171 ANIYERILE 179 (577)
T ss_pred HHHHHHHHh
Confidence 444444443
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.3 Score=43.57 Aligned_cols=94 Identities=9% Similarity=-0.089 Sum_probs=71.3
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC--CCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhcc
Q 038303 350 HYACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427 (461)
Q Consensus 350 ~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (461)
++..|.-++.+.+++.+|+....+. -.+++....-.=..+|...|+++.|+..|+++.+..|.|..+-..++..-.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 5566777888888888888887776 23456666666667788889999999999999998888888888888887777
Q ss_pred CChhhH-HHHHHHHHHc
Q 038303 428 DRWEDT-NKIRDEIRRM 443 (461)
Q Consensus 428 g~~~~A-~~~~~~m~~~ 443 (461)
.++.+. .++|..|...
T Consensus 339 ~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 666554 7788887543
No 234
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.10 E-value=1.6 Score=43.04 Aligned_cols=113 Identities=8% Similarity=-0.051 Sum_probs=50.9
Q ss_pred CChHHHHHHHHHHHhcC-CCCCH--hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHH
Q 038303 291 GCGRQALQLFSLMIINA-VFPDD--VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367 (461)
Q Consensus 291 ~~~~~a~~~~~~m~~~g-~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 367 (461)
.+.+.|..++....... +.+.. .....+.......+...+|...++.... -..+......-+..-.+.++++.+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHHHH
Confidence 34466666666653322 22222 1222222222222224455555544332 112333334444444466666666
Q ss_pred HHHHHhCCC--CchhhHHHHHHHHHHhcCChHHHHHHHHHH
Q 038303 368 EAFIREMPI--EAEWSVWGALLNACRIHRNDEMFDRIRQDL 406 (461)
Q Consensus 368 ~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 406 (461)
...+..|+. .....-..-+.+++...|+.++|...|+.+
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666621 111122223444445566666666666665
No 235
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.08 E-value=0.46 Score=36.47 Aligned_cols=128 Identities=11% Similarity=-0.015 Sum_probs=81.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHH
Q 038303 279 SWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMY 358 (461)
Q Consensus 279 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 358 (461)
....++..+...+.+.....+++.+...+. .+...++.++..|++.+ .+.....++. . ++.......++.|
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~-----~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--K-----SNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--c-----cccCCHHHHHHHH
Confidence 345566677777778888888888877763 56667778888887653 3333444431 1 3344445577778
Q ss_pred hhcCCHHHHHHHHHhCCCCchhhHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCCChhHHHHHHHHHhc
Q 038303 359 GRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAG 426 (461)
Q Consensus 359 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (461)
.+.+.++++.-++.+++... ..+..+... ++++.|++++.+ ..++..|..++..+..
T Consensus 80 ~~~~l~~~~~~l~~k~~~~~------~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 80 EKAKLYEEAVELYKKDGNFK------DAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD 137 (140)
T ss_pred HHcCcHHHHHHHHHhhcCHH------HHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence 88888888888888885422 223333333 778888887765 2356677777766654
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.93 E-value=0.06 Score=48.96 Aligned_cols=61 Identities=15% Similarity=0.059 Sum_probs=52.4
Q ss_pred CHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCc----chHHHHHHHHhhcCCHHHHHHHHHhC
Q 038303 311 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQM----QHYACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 311 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
+...+..+..+|...|++++|+..|+...+ +.|+. ..|..+..+|...|+.++|+..+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 457888899999999999999999999877 34664 35888999999999999999999988
No 237
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.86 E-value=0.33 Score=40.07 Aligned_cols=92 Identities=12% Similarity=0.083 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCCH-hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCC--CCCcchHH
Q 038303 280 WSTVISGLAMNGCGRQALQLFSLMIIN----AVFPDD-VTFIALISACSHGGLVDQGLILFKAMSTVYEI--VPQMQHYA 352 (461)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ 352 (461)
+...-..+.+...+++|-..+.+-... .-.|+. ..|...|-.+....++..|.+.++.-.+..++ +-+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 344445566666666655544432211 111222 23444455556666777777777663331121 23355666
Q ss_pred HHHHHHhhcCCHHHHHHHHH
Q 038303 353 CVVDMYGRAGLLEEAEAFIR 372 (461)
Q Consensus 353 ~l~~~~~~~g~~~~A~~~~~ 372 (461)
.|+.+| ..|+.+++.+++.
T Consensus 233 nLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHh-ccCCHHHHHHHHc
Confidence 666666 3566666666543
No 238
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=2.2 Score=42.03 Aligned_cols=210 Identities=14% Similarity=0.018 Sum_probs=125.3
Q ss_pred chHHHHHHHHHhhCCHHHHHHHHHHHHH----hC------------CCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 038303 11 YTFTQALKACSLAHPHQKALEIHAHVIE----YG------------HLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP 74 (461)
Q Consensus 11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 74 (461)
...+.++.++...+.+-.-.-++..+.+ .+ .....-....-+..+++...++-|..+-+.-..
T Consensus 284 ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~- 362 (933)
T KOG2114|consen 284 SSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQHL- 362 (933)
T ss_pred cchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCC-
Confidence 3456777777777765544444443332 22 011112334557777888888888888876532
Q ss_pred CceeHH----HHHHHHHcCCChHHHHHHHhcC--CCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHH
Q 038303 75 DVVSWT----TIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148 (461)
Q Consensus 75 ~~~~~~----~li~~~~~~~~~~~a~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 148 (461)
|..... ...+-+.+.|++++|...|-+- -++|. .++.-+........-..+++.+.+.|.. +...-..
T Consensus 363 d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttl 436 (933)
T KOG2114|consen 363 DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTL 436 (933)
T ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHH
Confidence 222222 2334456789999999888665 33443 3566667777788888888899998888 5666678
Q ss_pred HHHHHHHcCChhhHHHHHhcCCCCch-hHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhh
Q 038303 149 ILDFYIRCGSLASCGYLFVKMPKRNV-VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 227 (461)
Q Consensus 149 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~ 227 (461)
|+.+|.+.++.++-.++.+...+... .-....+..+.+.+-.++|.-+-.+... +...... .+-..++++
T Consensus 437 LLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~------he~vl~i---lle~~~ny~ 507 (933)
T KOG2114|consen 437 LLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK------HEWVLDI---LLEDLHNYE 507 (933)
T ss_pred HHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc------CHHHHHH---HHHHhcCHH
Confidence 99999999999988888887763111 1133444555555555555444333221 1111111 233445666
Q ss_pred hHHHHHHHH
Q 038303 228 FGKYVHSYI 236 (461)
Q Consensus 228 ~a~~~~~~~ 236 (461)
+|.+.++.+
T Consensus 508 eAl~yi~sl 516 (933)
T KOG2114|consen 508 EALRYISSL 516 (933)
T ss_pred HHHHHHhcC
Confidence 666665544
No 239
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.78 E-value=0.5 Score=44.09 Aligned_cols=165 Identities=13% Similarity=0.050 Sum_probs=98.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCC
Q 038303 182 GGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGD 261 (461)
Q Consensus 182 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 261 (461)
....-.++++++.++...-.-...++ ......++.-+.+.|-.+.|..+...-. .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCC
Confidence 34455667777666664211111022 3335566666667777777766544322 23444567888
Q ss_pred HHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhh
Q 038303 262 VGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 341 (461)
Q Consensus 262 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 341 (461)
++.|.++.++.. +...|..|.....+.|+++-|.+.|.+..+ |..|+-.|...|+.+.-.++.+....
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~- 401 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE- 401 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH-
Confidence 888887766555 566899999999999999999988887644 45666677778888777777766655
Q ss_pred cCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCch
Q 038303 342 YEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAE 379 (461)
Q Consensus 342 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~ 379 (461)
.| -++.-..++.-.|+.++..+++.+.+..|-
T Consensus 402 ~~------~~n~af~~~~~lgd~~~cv~lL~~~~~~~~ 433 (443)
T PF04053_consen 402 RG------DINIAFQAALLLGDVEECVDLLIETGRLPE 433 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHHTT-HHH
T ss_pred cc------CHHHHHHHHHHcCCHHHHHHHHHHcCCchH
Confidence 22 245555666677888888888887754443
No 240
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.77 E-value=0.089 Score=44.24 Aligned_cols=99 Identities=14% Similarity=0.161 Sum_probs=74.7
Q ss_pred HHHHHHHcc--CCChhhHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcC------------
Q 038303 265 AIQVFNMLA--YKDKISWSTVISGLAM-----NGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG------------ 325 (461)
Q Consensus 265 a~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~------------ 325 (461)
.++.|..+. ++|..+|.+.+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345555555 5577778877777654 356777777888899999999999999998876543
Q ss_pred ----CChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCH
Q 038303 326 ----GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364 (461)
Q Consensus 326 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 364 (461)
.+-+-++++++.|.. .|+.||..+-..|++++++.+..
T Consensus 133 ~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 233457888999988 89999999999999998877653
No 241
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.74 E-value=0.11 Score=43.75 Aligned_cols=58 Identities=7% Similarity=-0.007 Sum_probs=33.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcC---CCChhHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 038303 386 LLNACRIHRNDEMFDRIRQDLVNKK---GVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 386 l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 443 (461)
|..++...|+++.|...|..+.+.. |.-+..+.-|+.+..+.|+.++|..+|+++.++
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5555556666666666666655533 233455666666666666666666666666554
No 242
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.057 Score=47.90 Aligned_cols=64 Identities=3% Similarity=-0.073 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcC
Q 038303 381 SVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444 (461)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 444 (461)
..+..+..++.+.+++..|++...++++..|+|......-++++...|+++.|+..|+++.+..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 3567777889999999999999999999999999999999999999999999999999998743
No 243
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.64 E-value=0.41 Score=41.97 Aligned_cols=162 Identities=6% Similarity=-0.040 Sum_probs=88.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCC---HhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCC----Ccch
Q 038303 279 SWSTVISGLAMNGCGRQALQLFSLMIIN-AVFPD---DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP----QMQH 350 (461)
Q Consensus 279 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~ 350 (461)
.|..+.+++-+.-++.+++.+-..-... |..|. .....++..++...+.++++++.|+...+-..-.. ...+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 4445555555555555555554443321 22221 12233455566666777777777776654221111 2356
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-------CCCchhhHHH-----HHHHHHHhcCChHHHHHHHHHHhh--cCCC----
Q 038303 351 YACVVDMYGRAGLLEEAEAFIREM-------PIEAEWSVWG-----ALLNACRIHRNDEMFDRIRQDLVN--KKGV---- 412 (461)
Q Consensus 351 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~--~~~~---- 412 (461)
+-.|...|.+..++++|.-+..+. +...-..-|. .+.-++...|....|.+..++..+ ....
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 677777777777777776665544 2111111122 233346677777777777777665 1122
Q ss_pred ChhHHHHHHHHHhccCChhhHHHHHHHH
Q 038303 413 SVGTFALMSNTFAGADRWEDTNKIRDEI 440 (461)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m 440 (461)
.......+++.|...|+.+.|..-++..
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 2334556777777778777777666653
No 244
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.62 E-value=0.17 Score=37.15 Aligned_cols=51 Identities=20% Similarity=0.106 Sum_probs=23.8
Q ss_pred HHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 038303 322 CSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 322 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
....|+++.|++.|..... -.+-....||.-.+++.-.|+.++|++-+++.
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~A 103 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKA 103 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHH
Confidence 3444555555555544443 22333444444445554455555555444443
No 245
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.61 E-value=0.43 Score=44.47 Aligned_cols=129 Identities=12% Similarity=0.045 Sum_probs=71.5
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCCCchhHHHHHHHHHHhcCCh
Q 038303 111 LVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFC 190 (461)
Q Consensus 111 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~ 190 (461)
.+.+++-+.+.|..+.|.++.. |+. .-.....+.|+++.|.++.++.. +...|..|.....+.|++
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~ 363 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNI 363 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBH
T ss_pred HHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCH
Confidence 4445555555555555555422 221 23445667788888887777665 555788888888888888
Q ss_pred HHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHH
Q 038303 191 KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN 270 (461)
Q Consensus 191 ~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 270 (461)
+-|.+.|.+..+ +..++-.|...|+.+...++.+.... .|. ++....++.-.|+.++..+++.
T Consensus 364 ~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~~-~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 364 ELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAEE-RGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHH-TT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHHH-ccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 888888877654 33444455555665555555544443 111 2344444445566666555543
No 246
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.54 E-value=1.5 Score=38.34 Aligned_cols=17 Identities=6% Similarity=-0.279 Sum_probs=10.4
Q ss_pred HHhcCChHHHHHHHHHH
Q 038303 390 CRIHRNDEMFDRIRQDL 406 (461)
Q Consensus 390 ~~~~~~~~~a~~~~~~~ 406 (461)
+.+.++++.|.+.|+-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 44566666666666643
No 247
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.52 E-value=0.79 Score=39.85 Aligned_cols=113 Identities=12% Similarity=-0.021 Sum_probs=48.8
Q ss_pred cCCHHHHHHHHHHccCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHH----HHHHHHHcCCChHHH
Q 038303 259 CGDVGIAIQVFNMLAYK---DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFI----ALISACSHGGLVDQG 331 (461)
Q Consensus 259 ~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~----~ll~~~~~~~~~~~a 331 (461)
.|++.+|-..++++.+. |...+...=.++...|+.+.-...+++.... ..||...|. .+.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 34444444444444421 3444444444555555555555555554432 223332221 112223345555555
Q ss_pred HHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 038303 332 LILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
++.-++..+ --+-|...-.++...+-..|+..++.++..+-
T Consensus 195 Ek~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 555444433 11122333334444444555555555555444
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.46 E-value=1.6 Score=41.33 Aligned_cols=161 Identities=11% Similarity=0.062 Sum_probs=94.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCCH-----hHHHHHHHHHHc----CCChHHHHHHHHHhHhhcCCCCCc
Q 038303 279 SWSTVISGLAMNGCGRQALQLFSLMIINA-VFPDD-----VTFIALISACSH----GGLVDQGLILFKAMSTVYEIVPQM 348 (461)
Q Consensus 279 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 348 (461)
....++....-.|+-+.+++.+.+..+.+ +.-.. -.|..++..++. ....+.|.++++.+.+ .. |+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~y-P~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RY-PNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hC-CCc
Confidence 34445555555667677776666654422 21111 123344443333 4567778888888876 23 555
Q ss_pred chHHH-HHHHHhhcCCHHHHHHHHHhC-CCC---ch--hhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHH
Q 038303 349 QHYAC-VVDMYGRAGLLEEAEAFIREM-PIE---AE--WSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421 (461)
Q Consensus 349 ~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~---p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 421 (461)
..|.. -.+.+...|++++|.+.|++. ..+ |. ...+--+...+....++++|...|..+.+...-+..+|..+.
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 44443 345566778888888888875 111 11 112233444467788888888888888886666555555444
Q ss_pred H-HHhccCCh-------hhHHHHHHHHHH
Q 038303 422 N-TFAGADRW-------EDTNKIRDEIRR 442 (461)
Q Consensus 422 ~-~~~~~g~~-------~~A~~~~~~m~~ 442 (461)
- ++...|+. ++|.+++.++..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 4 34456777 778888877633
No 249
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.35 E-value=0.22 Score=42.00 Aligned_cols=95 Identities=17% Similarity=0.118 Sum_probs=63.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCC-cchHHHHH
Q 038303 279 SWSTVISGLAMNGCGRQALQLFSLMIINAVF--PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ-MQHYACVV 355 (461)
Q Consensus 279 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~ 355 (461)
.|+.-+.. .+.|++..|...|...++.... -....+-.|..++...|+++.|..+|..+.+..+-.|. +..+-.|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 35555543 4556688888888888775322 12245667778888888888888888777774433333 35666677
Q ss_pred HHHhhcCCHHHHHHHHHhC
Q 038303 356 DMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~~ 374 (461)
....+.|+.++|...|++.
T Consensus 223 ~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 223 VSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHhcCHHHHHHHHHHH
Confidence 7777777777777777776
No 250
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.27 E-value=1.5 Score=36.78 Aligned_cols=171 Identities=12% Similarity=0.049 Sum_probs=93.6
Q ss_pred HHhcCCHHHHHHHHHHccCC------ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHc-----
Q 038303 256 YVKCGDVGIAIQVFNMLAYK------DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH----- 324 (461)
Q Consensus 256 ~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----- 324 (461)
-.+.|++++|.+.|+.+... ...+--.++.++-+.+++++|+..+++....-......-|...|.+++.
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 45678888888888888743 2233445566777888888888888887764333222334444444432
Q ss_pred --CCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCchhhHHH-HHHHHHHhcCChHHHHH
Q 038303 325 --GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG-ALLNACRIHRNDEMFDR 401 (461)
Q Consensus 325 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~ 401 (461)
..+...+.+.+..+.+--.--|+.. -...|..-+..+. ....-++ .+.+-|.+.|.+..|..
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~-------------Ya~dA~~~i~~~~--d~LA~~Em~IaryY~kr~~~~AA~n 188 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYPNSR-------------YAPDAKARIVKLN--DALAGHEMAIARYYLKRGAYVAAIN 188 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCCCCc-------------chhhHHHHHHHHH--HHHHHHHHHHHHHHHHhcChHHHHH
Confidence 2233333333333332101112211 1111111111110 0000111 13344788888888888
Q ss_pred HHHHHhhcCCCC---hhHHHHHHHHHhccCChhhHHHHHHHHH
Q 038303 402 IRQDLVNKKGVS---VGTFALMSNTFAGADRWEDTNKIRDEIR 441 (461)
Q Consensus 402 ~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 441 (461)
-++.+++.-+.. ...+..+..+|...|-.++|.+.-+-+.
T Consensus 189 R~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 189 RFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 888888865444 4456677778888888888877665443
No 251
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=1.7 Score=37.29 Aligned_cols=147 Identities=11% Similarity=0.024 Sum_probs=86.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCH
Q 038303 285 SGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364 (461)
Q Consensus 285 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 364 (461)
......|++.+|..+|+...+.... +...-..+..+|...|+.+.|..++..+..+ --.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcC
Confidence 3456677888888888877765322 3455566777788888888888888776541 1111112222234455555555
Q ss_pred HHHHHHHHhCCCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCCChhHHHHHHHHHhccCChhhH
Q 038303 365 EEAEAFIREMPIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNK--KGVSVGTFALMSNTFAGADRWEDT 433 (461)
Q Consensus 365 ~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 433 (461)
.+...+-++....| |...-..+...+...|+.++|.+.+-.+.+. .-.+...-..++..+.-.|.-+.+
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 55555555553344 4444445555577777777777766665552 234455666777777666644443
No 252
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.19 E-value=0.017 Score=42.16 Aligned_cols=91 Identities=13% Similarity=0.073 Sum_probs=74.8
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CC-CchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-C---hhHHHHHHHHHhccC
Q 038303 355 VDMYGRAGLLEEAEAFIREM-PI-EAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV-S---VGTFALMSNTFAGAD 428 (461)
Q Consensus 355 ~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~---~~~~~~l~~~~~~~g 428 (461)
.-++...|+.+.|++.|.+. .. +.....||.-..++.-.|+.++|..-+++..+...+ . ...|..-+..|...|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34678899999999999987 33 345668999999999999999999999999984422 2 346777788899999
Q ss_pred ChhhHHHHHHHHHHcCC
Q 038303 429 RWEDTNKIRDEIRRMGL 445 (461)
Q Consensus 429 ~~~~A~~~~~~m~~~g~ 445 (461)
+-+.|..=|+...+.|-
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 99999999999988774
No 253
>PRK15331 chaperone protein SicA; Provisional
Probab=95.10 E-value=0.62 Score=36.21 Aligned_cols=21 Identities=5% Similarity=-0.209 Sum_probs=10.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhC
Q 038303 354 VVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 354 l~~~~~~~g~~~~A~~~~~~~ 374 (461)
...+|...|+.+.|...|+..
T Consensus 111 agqC~l~l~~~~~A~~~f~~a 131 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELV 131 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 344444445555555444444
No 254
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.00 E-value=0.16 Score=43.51 Aligned_cols=68 Identities=7% Similarity=0.101 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHH-----cCCcccc
Q 038303 382 VWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR-----MGLKKKT 449 (461)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~ 449 (461)
++..++..+...|+.+.+...++++....|-+...|..++.+|.+.|+...|+..++++.+ .|+.|.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~ 227 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAP 227 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccH
Confidence 4555666666777777777777777777777777777777777777777777777777644 4555544
No 255
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.96 E-value=1.2 Score=34.86 Aligned_cols=130 Identities=12% Similarity=0.029 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHh-HHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHH--
Q 038303 278 ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDV-TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV-- 354 (461)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-- 354 (461)
..|..-++ +++.+..++|+.-|..+.+.|...-+. .-..........|+...|...|+++-.+..+|.-..-...|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444443 466778888888888888766542211 11111223456788888888888887633322211122222
Q ss_pred HHHHhhcCCHHHHHHHHHhC--CCCch-hhHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 038303 355 VDMYGRAGLLEEAEAFIREM--PIEAE-WSVWGALLNACRIHRNDEMFDRIRQDLVN 408 (461)
Q Consensus 355 ~~~~~~~g~~~~A~~~~~~~--~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 408 (461)
.-.+...|.++......+-+ ...|- ...-..|.-+-.+.|++..|.+.|..+..
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 12345677777777777766 22222 22334455556677888888888877765
No 256
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.93 E-value=0.74 Score=34.90 Aligned_cols=53 Identities=21% Similarity=0.167 Sum_probs=25.8
Q ss_pred HHcCCChHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhC
Q 038303 322 CSHGGLVDQGLILFKAMSTVYEIVPQ-MQHYACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 322 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
..+.|++++|.+.|+.+.......+- ...--.|+.+|.+.+++++|...+++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34456666666666655552222111 222334455555555555555555544
No 257
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.89 E-value=3.6 Score=39.02 Aligned_cols=395 Identities=10% Similarity=0.013 Sum_probs=216.0
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHhcCCHHHHHHHHhhCC---CCCceeHHHHHHHHH
Q 038303 12 TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIF-IQNSLLHFYVTVKDIFSAHQIFNSVV---FPDVVSWTTIISGLS 87 (461)
Q Consensus 12 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~ 87 (461)
.++.+|.---...+.+.+..++..++.. .|-.. -|......=.+.|..+.+.++|++.+ +.++..|.....-+.
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~ 124 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLK 124 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 3455555544555566667777777643 24433 44555555567899999999999873 355566666554443
Q ss_pred -cCCChHHHHHHHhcC----CCCC-CchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH---c--
Q 038303 88 -KCGFHKEAIDMFCGI----DVKP-NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIR---C-- 156 (461)
Q Consensus 88 -~~~~~~~a~~~~~~m----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~-- 156 (461)
..|+.+...+.|+.. |..- ....|...|.--...+++.....++++.++. ....++....-|.+ .
T Consensus 125 n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~ 200 (577)
T KOG1258|consen 125 NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQNE 200 (577)
T ss_pred ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCC
Confidence 457888888888877 4443 4556777777778888899999999988875 22233332222221 1
Q ss_pred ----CChhhHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhh--HHHHHHH-------hhcc
Q 038303 157 ----GSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEAT--LVNVLSA-------CSSI 223 (461)
Q Consensus 157 ----g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~~~l~~-------~~~~ 223 (461)
-..+++.++-...... ..-...++. +..+=..+...+ .+.+..+ .+.+... +-..
T Consensus 201 ~~~l~~~d~~~~l~~~~~~~---------~~~~~~~~~--~e~~~~~v~~~~-~~s~~l~~~~~~l~~~~~~~~~~~~~s 268 (577)
T KOG1258|consen 201 EKILLSIDELIQLRSDVAER---------SKITHSQEP--LEELEIGVKDST-DPSKSLTEEKTILKRIVSIHEKVYQKS 268 (577)
T ss_pred hhhhcCHHHHHHHhhhHHhh---------hhcccccCh--hHHHHHHHhhcc-CccchhhHHHHHHHHHHHHHHHHHHhh
Confidence 1111111111111100 000000001 111111111111 0111000 0000000 1111
Q ss_pred chhhhHHHHHHHHHhh------cCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCC---ChhhHHHHHHHHHhcCChH
Q 038303 224 SALSFGKYVHSYISTR------YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DKISWSTVISGLAMNGCGR 294 (461)
Q Consensus 224 ~~~~~a~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~ 294 (461)
-........++.-.+. .-..++..+|..-+.--.+.|+.+.+.-+|+...-| -...|-..+.-.-..|+.+
T Consensus 269 ~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~ 348 (577)
T KOG1258|consen 269 EEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVS 348 (577)
T ss_pred HhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchh
Confidence 1111222222222221 112223456777777778899999999999888765 2334444444444558888
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHH-HHcCCChHHHHHHHHHhHhhcCCCCCc-chHHHHHHHHhhcCCHHHHH---H
Q 038303 295 QALQLFSLMIINAVFPDDVTFIALISA-CSHGGLVDQGLILFKAMSTVYEIVPQM-QHYACVVDMYGRAGLLEEAE---A 369 (461)
Q Consensus 295 ~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~ 369 (461)
-|..++....+--. |+......+=.. +-..|+++.|..+++.+.. .. |+. ..-..-+....+.|..+.+. .
T Consensus 349 ~~~~~~~~~~~i~~-k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~--e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~ 424 (577)
T KOG1258|consen 349 LANNVLARACKIHV-KKTPIIHLLEARFEESNGNFDDAKVILQRIES--EY-PGLVEVVLRKINWERRKGNLEDANYKNE 424 (577)
T ss_pred HHHHHHHhhhhhcC-CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHh--hC-CchhhhHHHHHhHHHHhcchhhhhHHHH
Confidence 88888777665433 233222222222 3447899999999999988 34 543 33333455566788888887 4
Q ss_pred HHHhC-C--CCchhh--HHHHHHHH-HHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccC
Q 038303 370 FIREM-P--IEAEWS--VWGALLNA-CRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428 (461)
Q Consensus 370 ~~~~~-~--~~p~~~--~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (461)
++... . ..+... .+.-..+- +...++.+.|..++.++.+..|++...|..++......+
T Consensus 425 l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 425 LYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 44444 1 112211 22222222 566789999999999999999999999999888877665
No 258
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.83 E-value=1.3 Score=33.84 Aligned_cols=89 Identities=7% Similarity=0.091 Sum_probs=61.7
Q ss_pred cchHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHcC
Q 038303 10 HYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKC 89 (461)
Q Consensus 10 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 89 (461)
......++..+...+.+.....+++.+...+. .+...++.++..|++.+ ..+..+.++. ..+......+++.|.+.
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHc
Confidence 34456788888888889999999999888764 57778888999888764 3444455552 23344455566777777
Q ss_pred CChHHHHHHHhcC
Q 038303 90 GFHKEAIDMFCGI 102 (461)
Q Consensus 90 ~~~~~a~~~~~~m 102 (461)
+.++++.-++..+
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 7777777777665
No 259
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.77 E-value=1.2 Score=33.72 Aligned_cols=115 Identities=12% Similarity=0.058 Sum_probs=67.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCC--CCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhh
Q 038303 283 VISGLAMNGCGRQALQLFSLMIINAVF--PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360 (461)
Q Consensus 283 l~~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 360 (461)
-.....+.|++++|.+.|+.+...-.. -....--.++.+|.+.++++.|...+++..+.+.-.|+ .-|...+.+++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHH
Confidence 344456778888888888888775211 12355667788888888888888888888873333333 345555555544
Q ss_pred cCCHHHHHHHHHhC-CCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCh
Q 038303 361 AGLLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414 (461)
Q Consensus 361 ~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 414 (461)
-...+. .+..+ +..-| .+....|...|+.+++..|.+.
T Consensus 95 ~~~~~~---~~~~~~~~drD-------------~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 95 YEQDEG---SLQSFFRSDRD-------------PTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHhhh---HHhhhcccccC-------------cHHHHHHHHHHHHHHHHCcCCh
Confidence 333222 22222 11111 1224567777777777777664
No 260
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.76 E-value=3.9 Score=38.84 Aligned_cols=153 Identities=11% Similarity=0.021 Sum_probs=78.3
Q ss_pred HHHHHHHcCCChHHHHHHHhcC----CCCCCc-----hhHHHHHHHhcc----cchhHHHHHHHHHHHhhcCCCChhHHH
Q 038303 81 TIISGLSKCGFHKEAIDMFCGI----DVKPNA-----NTLVSVLSACSS----LVSHKLGKAIHAHSLRNLNENNIILDN 147 (461)
Q Consensus 81 ~li~~~~~~~~~~~a~~~~~~m----~~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 147 (461)
.++....-.|+-+.+++.+.+. ++.-.. -.|..++..++. ..+.+.+.++++.+.++= |+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHHHH
Confidence 3344445556666666666555 111111 123333333222 345666777777766652 2333332
Q ss_pred -HHHHHHHHcCChhhHHHHHhcCCC-------CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 038303 148 -AILDFYIRCGSLASCGYLFVKMPK-------RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219 (461)
Q Consensus 148 -~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~ 219 (461)
.-.+.+...|++++|++.|++... -....+-.+..++.-..+|++|.+.|..+.+. -..+..+|..+..+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~--s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE--SKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc--cccHHHHHHHHHHH
Confidence 233455566777777777775442 12223444555566677777777777777765 33444455544444
Q ss_pred h-hccchh-------hhHHHHHHHHH
Q 038303 220 C-SSISAL-------SFGKYVHSYIS 237 (461)
Q Consensus 220 ~-~~~~~~-------~~a~~~~~~~~ 237 (461)
| ...++. ++|..++.++.
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 3 223444 55555555543
No 261
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.71 E-value=2.3 Score=37.56 Aligned_cols=195 Identities=8% Similarity=-0.006 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHcCChhhHHHHHhc-------CCC--CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---hhh
Q 038303 145 LDNAILDFYIRCGSLASCGYLFVK-------MPK--RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN---EAT 212 (461)
Q Consensus 145 ~~~~l~~~~~~~g~~~~a~~~~~~-------~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~ 212 (461)
++..+..+.++.|.+++++..--. ..+ .-...|..+.+++-+--++.+++.+-..-....+..|. -..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 444555566666666655443211 111 11234555555555555666666665554443223331 123
Q ss_pred HHHHHHHhhccchhhhHHHHHHHHHhhcCCC----CcchHHHHHHHHHHhcCCHHHHHHHHHHcc-------CCChh-hH
Q 038303 213 LVNVLSACSSISALSFGKYVHSYISTRYDLS----VSNLVGNAVINMYVKCGDVGIAIQVFNMLA-------YKDKI-SW 280 (461)
Q Consensus 213 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-------~~~~~-~~ 280 (461)
..++-.++...+.++.+.+.|+...+...-. ....++..|...|.+..++++|.-+..+.. -.|.. -|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 3345566667777778777777766522222 234577888888888888888776554332 12221 12
Q ss_pred H-----HHHHHHHhcCChHHHHHHHHHHHh----cCCCCCH-hHHHHHHHHHHcCCChHHHHHHHHHhH
Q 038303 281 S-----TVISGLAMNGCGRQALQLFSLMII----NAVFPDD-VTFIALISACSHGGLVDQGLILFKAMS 339 (461)
Q Consensus 281 ~-----~l~~~~~~~~~~~~a~~~~~~m~~----~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~ 339 (461)
. .|.-++...|+...|.+.-++..+ .|-+|.. .....+.+.|...|+.+.|+.-|+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 344467777888888877777543 3322221 233445566778899888887777653
No 262
>PRK11906 transcriptional regulator; Provisional
Probab=94.70 E-value=0.86 Score=41.85 Aligned_cols=158 Identities=8% Similarity=-0.025 Sum_probs=90.1
Q ss_pred hhH--HHHHHHHHhc-----CChHHHHHHHHHHHh-cCCCCCH-hHHHHHHHHHHcC---------CChHHHHHHHHHhH
Q 038303 278 ISW--STVISGLAMN-----GCGRQALQLFSLMII-NAVFPDD-VTFIALISACSHG---------GLVDQGLILFKAMS 339 (461)
Q Consensus 278 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~m~~-~g~~p~~-~~~~~ll~~~~~~---------~~~~~a~~~~~~~~ 339 (461)
..| ...+.+.... ...+.|+.+|.+... ....|+. ..|..+..++... .+..+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 5555554432 134567778888772 2245554 5566665554321 22334555555555
Q ss_pred hhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCchhh-HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChh--
Q 038303 340 TVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS-VWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVG-- 415 (461)
Q Consensus 340 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 415 (461)
+ --+-|......+..++.-.++.+.|..+|++. ...|+.. .|......+.-.|+.++|.+.+++..+..|....
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 4 22345555566666666677788888888877 4455443 3333333456678888888888888877765533
Q ss_pred HHHHHHHHHhccCChhhHHHHHH
Q 038303 416 TFALMSNTFAGADRWEDTNKIRD 438 (461)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~ 438 (461)
.....+..|+.. ..++|.+++-
T Consensus 410 ~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 410 VIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHcCC-chhhhHHHHh
Confidence 333444445544 4566666653
No 263
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.64 E-value=4.9 Score=39.42 Aligned_cols=102 Identities=7% Similarity=-0.018 Sum_probs=72.6
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHhCCCc---cHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHcCCChH
Q 038303 17 LKACSLAHPHQKALEIHAHVIEYGHLH---DIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHK 93 (461)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 93 (461)
++.+.+.+.+++|+.+-+.... ..| ....+...+..+...|++++|-...-.|...+..-|..-+..+...++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 6678888889999887766543 333 34466778888888999999999999998888888888888887777765
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHhcc
Q 038303 94 EAIDMFCGIDVKPNANTLVSVLSACSS 120 (461)
Q Consensus 94 ~a~~~~~~m~~~p~~~~~~~ll~~~~~ 120 (461)
....++=.-.-..+...|..++..+..
T Consensus 441 ~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 441 DIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hhhccCCCCCcccCchHHHHHHHHHHH
Confidence 544433221222355668778777665
No 264
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.61 E-value=1.4 Score=40.81 Aligned_cols=63 Identities=11% Similarity=0.031 Sum_probs=46.0
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc---hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 038303 348 MQHYACVVDMYGRAGLLEEAEAFIREM-PIEA---EWSVWGALLNACRIHRNDEMFDRIRQDLVNKK 410 (461)
Q Consensus 348 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 410 (461)
..+-..|..++-+.|+.++|.+.++++ +..| .......|+.++...+.+.++..++.+..+..
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 344455677777889999999888888 3223 33466778888888888999988888876543
No 265
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.48 E-value=0.078 Score=29.35 Aligned_cols=26 Identities=4% Similarity=0.148 Sum_probs=21.6
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHH
Q 038303 416 TFALMSNTFAGADRWEDTNKIRDEIR 441 (461)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 441 (461)
+|..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47789999999999999999999854
No 266
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.41 E-value=5.8 Score=39.31 Aligned_cols=53 Identities=13% Similarity=0.073 Sum_probs=33.5
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCchhhHHHHHHHHHHhcCChHHHHHHHHHHh
Q 038303 354 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLV 407 (461)
Q Consensus 354 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 407 (461)
++..+.+..+++.+..+.+..+.. ++..|..++..+.+.+..+.-.+...++.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 455666667777777777777533 66677777777777765555444444433
No 267
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.34 E-value=2.8 Score=35.32 Aligned_cols=65 Identities=9% Similarity=0.038 Sum_probs=34.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCh---hhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCc
Q 038303 179 TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNE---ATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245 (461)
Q Consensus 179 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 245 (461)
.-+..-.+.|++++|.+.|+.+.... +-++ .+...++-++-+.++.+.|....+...+..+-.|+
T Consensus 39 ~~g~~~L~~gn~~~A~~~fe~l~~~~--p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n 106 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYFEALDSRH--PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN 106 (254)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC--CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Confidence 33445577888999999999888652 2222 22333333444444455554444444443333333
No 268
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.30 E-value=1.4 Score=35.38 Aligned_cols=94 Identities=12% Similarity=0.019 Sum_probs=56.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH--hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCc------ch
Q 038303 279 SWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD--VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQM------QH 350 (461)
Q Consensus 279 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~ 350 (461)
.+..+...|++.|+.+.|.+.|.++.+....|.. ..+-.+|+.....+++..+...+.+......-..+. ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4566677777777777777777777776554444 445566677777777777777776665521111111 12
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC
Q 038303 351 YACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 351 ~~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
|..| .+...+++.+|.+.|-+.
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHcc
Confidence 2222 223467777777777666
No 269
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.28 E-value=0.59 Score=39.54 Aligned_cols=98 Identities=11% Similarity=0.095 Sum_probs=75.6
Q ss_pred HHHHHhcCC--CCchhHHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhcc-----------
Q 038303 162 CGYLFVKMP--KRNVVSWTTMIGGYAE-----RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI----------- 223 (461)
Q Consensus 162 a~~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~----------- 223 (461)
.++.|.... ++|..+|-..+..+.. .+..+=....++.|.+-| +.-|..+|..+++.+-+.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyG-VerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYG-VERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhc-chhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 345566665 4777788777776654 356777777888899988 999999999999886553
Q ss_pred -----chhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCC
Q 038303 224 -----SALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGD 261 (461)
Q Consensus 224 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 261 (461)
.+-.-+..++++|.. .|+.||..+-..|++++++.+-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccc
Confidence 234557888999988 9999999998999999987765
No 270
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.15 E-value=3.4 Score=35.58 Aligned_cols=54 Identities=9% Similarity=0.131 Sum_probs=38.9
Q ss_pred HhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCC
Q 038303 117 ACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK 171 (461)
Q Consensus 117 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 171 (461)
.....|+...|..+|......... +...--.++.+|...|+.+.|..++..++.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 345667777888888877776555 345556677788888888888888888764
No 271
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.10 E-value=3 Score=34.81 Aligned_cols=182 Identities=15% Similarity=0.039 Sum_probs=72.9
Q ss_pred CChHHHHHHHHHHHhcCCCC-CChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHH
Q 038303 188 GFCKEAVSVFQEMEKTKEAE-PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266 (461)
Q Consensus 188 ~~~~~a~~~~~~m~~~~~~~-~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 266 (461)
+....+...+....... .. .....+......+...+....+...+...............+......+...++...+.
T Consensus 37 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 37 GELAEALELLEEALELL-PNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred hhHHHHHHHHHHHHhcC-ccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34444444444444421 10 02344444444455555555555554444331012222233333444444444455555
Q ss_pred HHHHHccCC--Ch-hhHHHHHH-HHHhcCChHHHHHHHHHHHhcCCCC----CHhHHHHHHHHHHcCCChHHHHHHHHHh
Q 038303 267 QVFNMLAYK--DK-ISWSTVIS-GLAMNGCGRQALQLFSLMIINAVFP----DDVTFIALISACSHGGLVDQGLILFKAM 338 (461)
Q Consensus 267 ~~~~~~~~~--~~-~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 338 (461)
+.+...... +. ........ .+...|+++.|...+.+... ..| ....+......+...++.+.+...+...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 555444421 11 11122222 34445555555555555433 111 1122222222233444455555554444
Q ss_pred HhhcCCCC-CcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 038303 339 STVYEIVP-QMQHYACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 339 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
.. ..+. ....+..+...+...++++.|...+...
T Consensus 194 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 228 (291)
T COG0457 194 LK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKA 228 (291)
T ss_pred Hh--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 43 1112 2333444444444444444444444444
No 272
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.98 E-value=4.7 Score=36.64 Aligned_cols=148 Identities=7% Similarity=-0.069 Sum_probs=75.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---CHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCC--cch
Q 038303 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP---DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ--MQH 350 (461)
Q Consensus 276 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 350 (461)
...+|..++..+.+.|.++.|...+.++...+..+ ++.....-.+..-..|+.++|+..++.... ..+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~-~~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK-CRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH-HHhhhcccccc
Confidence 44567778888888888888888888877644222 223333445556667888888888777765 122211 111
Q ss_pred HHHHHHHHhhcCCHHHHHHHH-HhCCCCchhhHHHHHHHHHHh------cCChHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 038303 351 YACVVDMYGRAGLLEEAEAFI-REMPIEAEWSVWGALLNACRI------HRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423 (461)
Q Consensus 351 ~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 423 (461)
...+...+.. ..+.....- .......-...+..+..-+.. .+..+++...|..+.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111100 000000000 000000001112112222222 3777888888888888777777777777766
Q ss_pred Hhc
Q 038303 424 FAG 426 (461)
Q Consensus 424 ~~~ 426 (461)
+.+
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 654
No 273
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.89 E-value=3.5 Score=34.84 Aligned_cols=198 Identities=11% Similarity=0.077 Sum_probs=100.3
Q ss_pred CCCCCCcchHHHHHHHHH-hhCCHHHHHHHHHHHHHhCCCccHH---HHHHHHHHHHhcCCHHHHHHHHhhCC-------
Q 038303 4 CPSSYNHYTFTQALKACS-LAHPHQKALEIHAHVIEYGHLHDIF---IQNSLLHFYVTVKDIFSAHQIFNSVV------- 72 (461)
Q Consensus 4 ~g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~------- 72 (461)
.+-.||+..=|..-++-+ +...+++|+.-|+...+........ ....++....+.+++++....|.++.
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 345666666554443322 3446778888888777653222222 34456677777777777777776651
Q ss_pred --CCCceeHHHHHHHHHcCCChHHHHHHHhcCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhh-cCCCChh----H
Q 038303 73 --FPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRN-LNENNII----L 145 (461)
Q Consensus 73 --~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~----~ 145 (461)
.-+..+.|++++-.....+.+ ....+++.-++. .-..+.. +
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~--------------------------------LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMD--------------------------------LLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhH--------------------------------HHHHHHHHHHHHHHhhhcceeeeec
Confidence 112233444444333333333 333332222111 0000111 1
Q ss_pred HHHHHHHHHHcCChhhHHHHHhcCCC---------------CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCh
Q 038303 146 DNAILDFYIRCGSLASCGYLFVKMPK---------------RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNE 210 (461)
Q Consensus 146 ~~~l~~~~~~~g~~~~a~~~~~~~~~---------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 210 (461)
-..|...|...|.+.+..+++.++.+ .-...|..=|..|..+.+-.+...+|++...-....|.+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 13345555555555555555555432 012356666777777777777777777765543355555
Q ss_pred hhHHHHHHH----hhccchhhhHHHHH
Q 038303 211 ATLVNVLSA----CSSISALSFGKYVH 233 (461)
Q Consensus 211 ~~~~~~l~~----~~~~~~~~~a~~~~ 233 (461)
.....+-.+ ..+.|.+++|..=|
T Consensus 228 lImGvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 228 LIMGVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred HHHhHHHHcCCccccccchHHHHHhHH
Confidence 554443332 34456666665433
No 274
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.84 E-value=9.4 Score=39.59 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=27.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHccCCChhh---HHHHHHHHHhcCChHHHHHHHHHHH
Q 038303 252 VINMYVKCGDVGIAIQVFNMLAYKDKIS---WSTVISGLAMNGCGRQALQLFSLMI 304 (461)
Q Consensus 252 li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~ 304 (461)
.+.+|..+|++.+|..+-.++...-... -..|+.-+...+++-+|-++..+..
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 4455555666666666665555432211 2445555555666666555555543
No 275
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.80 E-value=1.7 Score=34.07 Aligned_cols=118 Identities=14% Similarity=0.082 Sum_probs=81.9
Q ss_pred HHhcCCHHHHHHHHHHccCCChhhHHHHH-----HHHHhcCChHHHHHHHHHHHhcCCCCCHh-HHHHHHH--HHHcCCC
Q 038303 256 YVKCGDVGIAIQVFNMLAYKDKISWSTVI-----SGLAMNGCGRQALQLFSLMIINAVFPDDV-TFIALIS--ACSHGGL 327 (461)
Q Consensus 256 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~--~~~~~~~ 327 (461)
+.+.+..++|+.-|..+.+.+...|-.|. ....+.|+...|...|++.-.....|-.. -...|=. .+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 45678888888888888877665555543 34677899999999999987765555443 1122212 3567888
Q ss_pred hHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 038303 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
++....-.+-+.. .+-+.....-..|.-+-.+.|++.+|.++|..+
T Consensus 148 y~dV~srvepLa~-d~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 148 YDDVSSRVEPLAG-DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHHHhhhccC-CCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 8888887777655 343344444556766777899999999999987
No 276
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.80 E-value=8.1 Score=38.71 Aligned_cols=194 Identities=13% Similarity=0.075 Sum_probs=97.2
Q ss_pred HhcCCHHHHHHHHHHcc----CCCh-------hhHHHHHH-HHHhcCChHHHHHHHHHHHhc----CCCCCHhHHHHHHH
Q 038303 257 VKCGDVGIAIQVFNMLA----YKDK-------ISWSTVIS-GLAMNGCGRQALQLFSLMIIN----AVFPDDVTFIALIS 320 (461)
Q Consensus 257 ~~~g~~~~a~~~~~~~~----~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~ll~ 320 (461)
....++++|..++.+.. .++. ..|+.+-. .....|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34566666666665543 2211 13444322 233467777877777666543 12334455566666
Q ss_pred HHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHH-----HHHhhcCCH--HHHHHHHHhC-----CCC----chhhHHH
Q 038303 321 ACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVV-----DMYGRAGLL--EEAEAFIREM-----PIE----AEWSVWG 384 (461)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~--~~A~~~~~~~-----~~~----p~~~~~~ 384 (461)
+..-.|++++|..+.....+ ..-.-+...+.... ..+...|+. ++.+..|... +.+ +-..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~-~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQ-MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 66677888888777766655 22223333332222 223445522 2222223222 111 1223344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhh----cCCCCh---hHHHHHHHHHhccCChhhHHHHHHHHHHcCCccccCcccc
Q 038303 385 ALLNACRIHRNDEMFDRIRQDLVN----KKGVSV---GTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454 (461)
Q Consensus 385 ~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 454 (461)
.++.++.+ .+.+..-.....+ ..|... ..+..|++.....|+.++|...++++......+++...|.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~ 658 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL 658 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
Confidence 44444333 3333333332222 112211 1223677788888888888888888877766665554443
No 277
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.74 E-value=7.6 Score=38.21 Aligned_cols=169 Identities=14% Similarity=0.063 Sum_probs=103.8
Q ss_pred HHHHHHcCCChHHHHHHHhcC-CCCCC---chhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcC
Q 038303 82 IISGLSKCGFHKEAIDMFCGI-DVKPN---ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCG 157 (461)
Q Consensus 82 li~~~~~~~~~~~a~~~~~~m-~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 157 (461)
=|+.+.+.+.+++|++..+.. |..|. .......|..+...|++++|-...-.|... +..-|.--+..+...+
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 366778889999999999888 66663 345667788888888888888887777665 5566666666666666
Q ss_pred ChhhHHHHHhcCCC-CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHH
Q 038303 158 SLASCGYLFVKMPK-RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236 (461)
Q Consensus 158 ~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~ 236 (461)
+......++-.-.. -+...|..++..++. ... .-|.+..+. -+++...-..++++.-. ++
T Consensus 438 ~l~~Ia~~lPt~~~rL~p~vYemvLve~L~----~~~-~~F~e~i~~--Wp~~Lys~l~iisa~~~------------q~ 498 (846)
T KOG2066|consen 438 QLTDIAPYLPTGPPRLKPLVYEMVLVEFLA----SDV-KGFLELIKE--WPGHLYSVLTIISATEP------------QI 498 (846)
T ss_pred ccchhhccCCCCCcccCchHHHHHHHHHHH----HHH-HHHHHHHHh--CChhhhhhhHHHhhcch------------HH
Confidence 66554444333332 356678888887776 222 223333332 44444433333333111 01
Q ss_pred HhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCC
Q 038303 237 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD 276 (461)
Q Consensus 237 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 276 (461)
. ...-+......|+..|...+++.+|..++-..++++
T Consensus 499 ~---q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~ 535 (846)
T KOG2066|consen 499 K---QNSESTALLEVLAHLYLYDNKYEKALPIYLKLQDKD 535 (846)
T ss_pred H---hhccchhHHHHHHHHHHHccChHHHHHHHHhccChH
Confidence 0 011112223448888888999999998888877664
No 278
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.74 E-value=4.5 Score=35.59 Aligned_cols=134 Identities=9% Similarity=0.130 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhc--c----chhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHH
Q 038303 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS--I----SALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263 (461)
Q Consensus 190 ~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~--~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 263 (461)
+++...+++.|.+.| +.-+..+|.+....... . .....+..+++.|.+.+.+-.+
T Consensus 78 ~~~~~~~y~~L~~~g-Fk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs------------------ 138 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAG-FKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTS------------------ 138 (297)
T ss_pred HHHHHHHHHHHHHhc-cCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccC------------------
Confidence 445667888888888 88887777654333222 1 1233344444444443222111
Q ss_pred HHHHHHHHccCCChhhHHHHHHHHHhcCC----hHHHHHHHHHHHhcCCCCCHh--HHHHHHHHHHcCCC--hHHHHHHH
Q 038303 264 IAIQVFNMLAYKDKISWSTVISGLAMNGC----GRQALQLFSLMIINAVFPDDV--TFIALISACSHGGL--VDQGLILF 335 (461)
Q Consensus 264 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~ 335 (461)
++..++..++.. ..++ .+.++.+|+.+.+.|+..+.. ....++..+..... ..++..++
T Consensus 139 -----------~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~ 205 (297)
T PF13170_consen 139 -----------PEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELY 205 (297)
T ss_pred -----------ccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 122333333332 2222 245667777777777765542 33333333322222 44677788
Q ss_pred HHhHhhcCCCCCcchHHHHHH
Q 038303 336 KAMSTVYEIVPQMQHYACVVD 356 (461)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~l~~ 356 (461)
+.+.+ .|+++....|..+.-
T Consensus 206 ~~l~~-~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 206 NALKK-NGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHH-cCCccccccccHHHH
Confidence 88877 688877777665543
No 279
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=93.73 E-value=5.8 Score=36.84 Aligned_cols=242 Identities=11% Similarity=0.046 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHhcCCCCCChhhHHHHHHHhhcc------chhhhHHHHHHHHHhhcCCCCc-chHHHHHHHHHHhcCCHH
Q 038303 191 KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI------SALSFGKYVHSYISTRYDLSVS-NLVGNAVINMYVKCGDVG 263 (461)
Q Consensus 191 ~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~------~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~ 263 (461)
+....+|++..+ .-|+...+...|..|... ..+.....+++...+..+..+. ...|..+.-.++..+...
T Consensus 299 s~~~~v~ee~v~---~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r 375 (568)
T KOG2396|consen 299 SRCCAVYEEAVK---TLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAR 375 (568)
T ss_pred HHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHh
Confidence 344467777666 455555565555554332 2344555666666664454444 335566666666655544
Q ss_pred H-HHHHHHHccCCChhhHHHHHHHHHhcC-ChHH-HHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCC-hHHH--HHHHHH
Q 038303 264 I-AIQVFNMLAYKDKISWSTVISGLAMNG-CGRQ-ALQLFSLMIINAVFPDDVTFIALISACSHGGL-VDQG--LILFKA 337 (461)
Q Consensus 264 ~-a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~-a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a--~~~~~~ 337 (461)
+ |..+..+....+...|..-++...+.. +++- -.+++......-..+-...++... .++ .... ..++..
T Consensus 376 ~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a 450 (568)
T KOG2396|consen 376 EVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISA 450 (568)
T ss_pred HHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHH
Confidence 4 333433555556666665555544321 2221 222233333322222223333332 122 1111 122333
Q ss_pred hHhhcCCCCCcch-HHHHHHHHhhcCCHHHHHHHHHhC-CC-CchhhHHHHHHHHH--HhcCChHHHHHHHHHHhhcCCC
Q 038303 338 MSTVYEIVPQMQH-YACVVDMYGRAGLLEEAEAFIREM-PI-EAEWSVWGALLNAC--RIHRNDEMFDRIRQDLVNKKGV 412 (461)
Q Consensus 338 ~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~ 412 (461)
... -..|+..+ -+.+++-+-+.|-.++|...+..+ .. +|+...|..++..- ...-+...+..+++.+......
T Consensus 451 ~~s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~ 528 (568)
T KOG2396|consen 451 LLS--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGA 528 (568)
T ss_pred HHH--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCC
Confidence 333 22344444 456788888999999999999988 22 34666677776651 2222378889999999986668
Q ss_pred ChhHHHHHHHHHhccCChhhHHHHHHHHHH
Q 038303 413 SVGTFALMSNTFAGADRWEDTNKIRDEIRR 442 (461)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 442 (461)
++..|.....--...|+.+.+-.++.+..+
T Consensus 529 d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 529 DSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred ChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 899999988888899999988887776643
No 280
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.70 E-value=4.5 Score=35.46 Aligned_cols=145 Identities=8% Similarity=-0.088 Sum_probs=99.3
Q ss_pred HhcCCHHHHHHHHhhC---CCCCceeHHHHHHHHHcCCChHHHHHHHhcC--CCCCCchhHHHHH----HHhcccchhHH
Q 038303 56 VTVKDIFSAHQIFNSV---VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSVL----SACSSLVSHKL 126 (461)
Q Consensus 56 ~~~~~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m--~~~p~~~~~~~ll----~~~~~~~~~~~ 126 (461)
.-.|++.+|-..++++ -+.|..+++..=.++.-.|+...-...+++. .-.||...|.-+= -++...|-+++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 3467777877777777 3456667777778888889888888888877 3355554443332 23457788899
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCC--Cc-----hhHHHHHHHHHHhcCChHHHHHHHHH
Q 038303 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK--RN-----VVSWTTMIGGYAERGFCKEAVSVFQE 199 (461)
Q Consensus 127 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-----~~~~~~li~~~~~~~~~~~a~~~~~~ 199 (461)
|++.-++..+.+.. |.-...++...+-..|+..++.++..+-.. ++ ...|=...-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 99888888776544 555666778888888999999988877664 11 11122233345667889999999886
Q ss_pred HH
Q 038303 200 ME 201 (461)
Q Consensus 200 m~ 201 (461)
-.
T Consensus 273 ei 274 (491)
T KOG2610|consen 273 EI 274 (491)
T ss_pred HH
Confidence 43
No 281
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.64 E-value=2.2 Score=31.71 Aligned_cols=63 Identities=13% Similarity=0.064 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCC
Q 038303 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 344 (461)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 344 (461)
....+..+...|+-|+-.+++.++.+. -.|++...-.+..+|.+.|+..++.+++.+..+ .|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe-kG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE-KGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH-hch
Confidence 344566677777777777777777652 356667777777778888888888887777776 454
No 282
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.40 E-value=0.33 Score=28.26 Aligned_cols=40 Identities=10% Similarity=-0.019 Sum_probs=27.6
Q ss_pred chHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHH
Q 038303 11 YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSL 51 (461)
Q Consensus 11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 51 (461)
.++..+..++.+.|++++|.++|+...+..+. ++..+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence 35667777888888888888888888876543 44444443
No 283
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.29 E-value=5.2 Score=34.98 Aligned_cols=160 Identities=8% Similarity=-0.028 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHhcCChH---HHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHH
Q 038303 278 ISWSTVISGLAMNGCGR---QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACV 354 (461)
Q Consensus 278 ~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 354 (461)
.+...++.++...+..+ +|..+++.+...... .+..+..-++.+.+.++.+.+.+.+.+|... +.-....+...
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~--~~~~e~~~~~~ 161 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS--VDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh--cccccchHHHH
Confidence 34566677777666544 455566666443221 2345555666666788888888888888873 32222333333
Q ss_pred HHHH---hhcCCHHHHHHHHHhC-----CCCchhhHHHHHHHH---HHhc------CChHHHHHHHHHHhh--cCCCChh
Q 038303 355 VDMY---GRAGLLEEAEAFIREM-----PIEAEWSVWGALLNA---CRIH------RNDEMFDRIRQDLVN--KKGVSVG 415 (461)
Q Consensus 355 ~~~~---~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~---~~~~------~~~~~a~~~~~~~~~--~~~~~~~ 415 (461)
+..+ .... ...|...+..+ ...++...=..++.. .... +..+....+++.+.+ ..|.+..
T Consensus 162 l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~ 240 (278)
T PF08631_consen 162 LHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE 240 (278)
T ss_pred HHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence 3333 3333 33444444444 222331111111111 1121 124455555554443 2343433
Q ss_pred HH---H----HHHHHHhccCChhhHHHHHHHHH
Q 038303 416 TF---A----LMSNTFAGADRWEDTNKIRDEIR 441 (461)
Q Consensus 416 ~~---~----~l~~~~~~~g~~~~A~~~~~~m~ 441 (461)
+- . .-+..+.+.++|++|.+.++-..
T Consensus 241 ~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 241 AASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 32 2 22445668899999999997543
No 284
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.28 E-value=0.069 Score=41.24 Aligned_cols=130 Identities=10% Similarity=0.118 Sum_probs=86.1
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHcCCChH
Q 038303 14 TQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHK 93 (461)
Q Consensus 14 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 93 (461)
..+++.+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .-...++..+.+.|.++
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 346777888899999999999999877667788999999999999888888888884422 34456777777888888
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC
Q 038303 94 EAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGS 158 (461)
Q Consensus 94 ~a~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 158 (461)
+|.-++..+|....... .+...++++.|.++... .++...|..+++.+...+.
T Consensus 88 ~a~~Ly~~~~~~~~al~------i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 88 EAVYLYSKLGNHDEALE------ILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHCCTTHTTCSS------TSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHcccHHHHHH------HHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 88888877732222111 12333444444422111 1356667777766655443
No 285
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.26 E-value=4.3 Score=33.85 Aligned_cols=163 Identities=12% Similarity=0.026 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHH
Q 038303 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKT-KEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVI 253 (461)
Q Consensus 175 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 253 (461)
..+......+...+++..+...+...... . .......+..........+....+...+..... ....+ ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~ 136 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELEL-LPNLAEALLNLGLLLEALGKYEEALELLEKALA-LDPDP-DLAEALLA 136 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhh-ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHc-CCCCc-chHHHHHH
Confidence 34444444555555555555555554431 1 333333444444444444445555555554433 11111 11111111
Q ss_pred H-HHHhcCCHHHHHHHHHHccCCC------hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCC
Q 038303 254 N-MYVKCGDVGIAIQVFNMLAYKD------KISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326 (461)
Q Consensus 254 ~-~~~~~g~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 326 (461)
. .+...|+++.|...+......+ ...+......+...++.+.+...+.+............+..+...+...+
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 137 LGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 1 4445555555555554443211 11122222223344555555555555544311102344444444445555
Q ss_pred ChHHHHHHHHHhHh
Q 038303 327 LVDQGLILFKAMST 340 (461)
Q Consensus 327 ~~~~a~~~~~~~~~ 340 (461)
+++.|...+.....
T Consensus 217 ~~~~a~~~~~~~~~ 230 (291)
T COG0457 217 KYEEALEYYEKALE 230 (291)
T ss_pred cHHHHHHHHHHHHh
Confidence 55555555554443
No 286
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.22 E-value=0.6 Score=37.34 Aligned_cols=123 Identities=6% Similarity=0.007 Sum_probs=80.4
Q ss_pred HHHHcCCChHHHHHHHHHhHhhcCCCCC-----cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCchhh-HHHHHHHHHHh
Q 038303 320 SACSHGGLVDQGLILFKAMSTVYEIVPQ-----MQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS-VWGALLNACRI 392 (461)
Q Consensus 320 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~ 392 (461)
.-+...|++++|..-|..... -+++. ...|..-..++.+.+.++.|+.-..+. .+.|... ....-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 347788999999999998887 34443 234444556788899999998888776 4444322 22222334888
Q ss_pred cCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhH--HHHHHHHHHcC
Q 038303 393 HRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDT--NKIRDEIRRMG 444 (461)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~m~~~g 444 (461)
...++.|++-++++.+..|....+-...++.--....-.+. .+++.++++.|
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlG 234 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLG 234 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999998888776666555543333322222 23445555544
No 287
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.20 E-value=18 Score=40.80 Aligned_cols=155 Identities=13% Similarity=0.057 Sum_probs=84.8
Q ss_pred HHHHHhhCCHHHHHHHHHHH----HHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhh-CCCCCceeHHHHHHHHHcCCC
Q 038303 17 LKACSLAHPHQKALEIHAHV----IEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNS-VVFPDVVSWTTIISGLSKCGF 91 (461)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~li~~~~~~~~ 91 (461)
..+-.+.+.+..|...++.- .+.. .....|-.+...|+..+++|...-+... ...|+ ...-|-.....|+
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 33445667777777777772 2211 1222334444478888888777776663 33333 2233444566788
Q ss_pred hHHHHHHHhcC-CCCCC-chhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHH-HHHHHHHHHcCChhhHHHHHhc
Q 038303 92 HKEAIDMFCGI-DVKPN-ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILD-NAILDFYIRCGSLASCGYLFVK 168 (461)
Q Consensus 92 ~~~a~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~ 168 (461)
+..|..+|+.+ +..|+ ..+++-++......|.++...-..+-......+ ....+ +.=+.+--+.+++|.......
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se-~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSE-EVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCH-HHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 88888888888 66666 566776766666666666555544433332211 22222 222233355566666655555
Q ss_pred CCCCchhHHHHH
Q 038303 169 MPKRNVVSWTTM 180 (461)
Q Consensus 169 ~~~~~~~~~~~l 180 (461)
..+..+|...
T Consensus 1543 --~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1543 --DRNIEYWSVE 1552 (2382)
T ss_pred --cccccchhHH
Confidence 3444444443
No 288
>PRK11906 transcriptional regulator; Provisional
Probab=93.19 E-value=7.1 Score=36.18 Aligned_cols=139 Identities=13% Similarity=0.057 Sum_probs=80.9
Q ss_pred HHHHHHHHHHcc---CCC---hhhHHHHHHHHHh---------cCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCC
Q 038303 262 VGIAIQVFNMLA---YKD---KISWSTVISGLAM---------NGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326 (461)
Q Consensus 262 ~~~a~~~~~~~~---~~~---~~~~~~l~~~~~~---------~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 326 (461)
.+.|..+|.+.. +-| ...|..+..++.. ..+..+|.++-++..+.+. -|......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-VDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhc
Confidence 566777887776 333 3444444433322 1234456666777766543 25666666666667777
Q ss_pred ChHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCchhh---HHHHHHHHHHhcCChHHHHH
Q 038303 327 LVDQGLILFKAMSTVYEIVPQ-MQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS---VWGALLNACRIHRNDEMFDR 401 (461)
Q Consensus 327 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~---~~~~l~~~~~~~~~~~~a~~ 401 (461)
+++.|...|+.... +.|| ...|....-.+.-+|+.++|.+.+++. ...|... .....+..|+..+ .+.|+.
T Consensus 353 ~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~ 428 (458)
T PRK11906 353 QAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIK 428 (458)
T ss_pred chhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHH
Confidence 78888888888866 4455 334444444556678888888888884 5555433 2223333444443 444555
Q ss_pred HHHH
Q 038303 402 IRQD 405 (461)
Q Consensus 402 ~~~~ 405 (461)
++-+
T Consensus 429 ~~~~ 432 (458)
T PRK11906 429 LYYK 432 (458)
T ss_pred HHhh
Confidence 4443
No 289
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.08 E-value=1.6 Score=40.08 Aligned_cols=127 Identities=14% Similarity=0.031 Sum_probs=65.2
Q ss_pred hcCChHHHHH-HHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHH
Q 038303 289 MNGCGRQALQ-LFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367 (461)
Q Consensus 289 ~~~~~~~a~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 367 (461)
..|+.-.|-+ ++.-+....-.|+.......| +...|+++.+.+.+..... -+.....+...+++...+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 3455554443 333333333334443333222 4456677777666665544 3334455566666666677777777
Q ss_pred HHHHHhC-CCC-chhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHH
Q 038303 368 EAFIREM-PIE-AEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFAL 419 (461)
Q Consensus 368 ~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 419 (461)
..+-..| +.+ -++.............|-++++...|+++....|+...-+..
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~ 430 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVN 430 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccccee
Confidence 7666666 211 122222222233455566667777777766666554444433
No 290
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.81 E-value=8 Score=35.77 Aligned_cols=113 Identities=14% Similarity=0.033 Sum_probs=71.2
Q ss_pred hcCCHHHHHHHH-hhC--CCCCceeHHHHHHHHHcCCChHHHHHHHhcC--CCCCCchhHHHHHHHhcccchhHHHHHHH
Q 038303 57 TVKDIFSAHQIF-NSV--VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSVLSACSSLVSHKLGKAIH 131 (461)
Q Consensus 57 ~~~~~~~a~~~~-~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 131 (461)
..|++..|-+-+ .-+ .+.+++.....-..+...|+++.+...+... .+.....+...+++...+.|+++.|...-
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 457776664433 333 2233333333334456678888888888777 34456677888888888888888888888
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCC
Q 038303 132 AHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP 170 (461)
Q Consensus 132 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 170 (461)
+.|+...++ +..+.....-..-..|-+|++.-.|++..
T Consensus 381 ~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 381 EMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHh
Confidence 888877665 33333322223334566777777777664
No 291
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.71 E-value=7.6 Score=35.28 Aligned_cols=66 Identities=11% Similarity=0.039 Sum_probs=51.7
Q ss_pred chhhHHHHHHHHHHhcCChHHHHHHHHHHhhcC----CCChhHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 038303 378 AEWSVWGALLNACRIHRNDEMFDRIRQDLVNKK----GVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 378 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 443 (461)
....+|..+...+.+.|.++.|...+..+.... ...+.+...-++.+...|+..+|...++.....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445577778888999999999999888888743 224667777788888899999999998888773
No 292
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.50 E-value=5.1 Score=35.24 Aligned_cols=126 Identities=9% Similarity=-0.008 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH--cC----ChhhHHHHHhcCCC-------CchhHHHHHHHHHHhcCC-
Q 038303 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIR--CG----SLASCGYLFVKMPK-------RNVVSWTTMIGGYAERGF- 189 (461)
Q Consensus 124 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~-------~~~~~~~~li~~~~~~~~- 189 (461)
++....+++.+.+.|+..+..+|-+..-.... .. ....|..+|+.|++ ++-.++..|+.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45566778888888888777666543332222 11 24567777888775 344555555443 2333
Q ss_pred ---hHHHHHHHHHHHhcCCCCC-ChhhHHHHHHHhhccc-h--hhhHHHHHHHHHhhcCCCCcchHHHHHH
Q 038303 190 ---CKEAVSVFQEMEKTKEAEP-NEATLVNVLSACSSIS-A--LSFGKYVHSYISTRYDLSVSNLVGNAVI 253 (461)
Q Consensus 190 ---~~~a~~~~~~m~~~~~~~~-~~~~~~~~l~~~~~~~-~--~~~a~~~~~~~~~~~~~~~~~~~~~~li 253 (461)
.+.+..+|+.+.+.| +.. |...+.+-+-++.... . ...+..+++.+.+ .|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~-f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAG-FKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhC-CCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHH
Confidence 356677777777766 444 3333333333333222 1 3466677777777 67777777665543
No 293
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.26 E-value=0.37 Score=26.57 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 038303 176 SWTTMIGGYAERGFCKEAVSVFQEME 201 (461)
Q Consensus 176 ~~~~li~~~~~~~~~~~a~~~~~~m~ 201 (461)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677788888888888888888754
No 294
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.10 E-value=0.36 Score=25.98 Aligned_cols=29 Identities=3% Similarity=0.190 Sum_probs=24.3
Q ss_pred hHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 038303 415 GTFALMSNTFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 443 (461)
..+..++.++.+.|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56888999999999999999999988764
No 295
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.04 E-value=1.9 Score=37.20 Aligned_cols=76 Identities=13% Similarity=0.178 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHh----hcCCCCCcchHHHHH
Q 038303 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST----VYEIVPQMQHYACVV 355 (461)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~ 355 (461)
+..++..+...|+++.+.+.++++..... -+...|..++.+|.+.|+...|+..|+.+.+ +.|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 34444444455555555555555544322 1344455555555555555555555544433 234555544444333
Q ss_pred H
Q 038303 356 D 356 (461)
Q Consensus 356 ~ 356 (461)
+
T Consensus 235 ~ 235 (280)
T COG3629 235 E 235 (280)
T ss_pred H
Confidence 3
No 296
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.87 E-value=0.4 Score=25.88 Aligned_cols=29 Identities=7% Similarity=0.185 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 038303 415 GTFALMSNTFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 443 (461)
.+|..++.+|...|++++|+..+++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 57888999999999999999999988764
No 297
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.85 E-value=3.1 Score=33.42 Aligned_cols=95 Identities=13% Similarity=0.084 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCC--cchHHHHHHHHhhcCCHHHHHHHHHhCC---CC---chhhHHH
Q 038303 313 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ--MQHYACVVDMYGRAGLLEEAEAFIREMP---IE---AEWSVWG 384 (461)
Q Consensus 313 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~---p~~~~~~ 384 (461)
..+..+...|++.|+.+.|.+.|.++.. ....+. ...+-.+|+.....+++..+...+.+.. .. ++...--
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~-~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARD-YCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhh-hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 5677888889999999999999999877 333333 4566778888888999999988888771 11 1111111
Q ss_pred HHHHH--HHhcCChHHHHHHHHHHhh
Q 038303 385 ALLNA--CRIHRNDEMFDRIRQDLVN 408 (461)
Q Consensus 385 ~l~~~--~~~~~~~~~a~~~~~~~~~ 408 (461)
....+ +...+++..|-+.|-....
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCc
Confidence 22222 4567888888888877654
No 298
>PRK09687 putative lyase; Provisional
Probab=91.78 E-value=8.4 Score=33.69 Aligned_cols=78 Identities=15% Similarity=-0.035 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcC
Q 038303 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNG-CGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325 (461)
Q Consensus 247 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 325 (461)
.+-...+.++++.++.+....+...+..+|...-...+.++.+.+ +.+.+...+..+.. .++...-...+.++.+.
T Consensus 143 ~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 143 NVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHcc
Confidence 333444445555444332222233333344433333444444332 12234444433332 23444444445555555
Q ss_pred CC
Q 038303 326 GL 327 (461)
Q Consensus 326 ~~ 327 (461)
++
T Consensus 220 ~~ 221 (280)
T PRK09687 220 KD 221 (280)
T ss_pred CC
Confidence 44
No 299
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.77 E-value=5.4 Score=31.45 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038303 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305 (461)
Q Consensus 250 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 305 (461)
..++..+...|++-+|.++.......+......++.+-.+.++...-..+++-..+
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555666677777777776665444444445555555555555444444444433
No 300
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.73 E-value=1.6 Score=30.70 Aligned_cols=60 Identities=8% Similarity=0.157 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 038303 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356 (461)
Q Consensus 295 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 356 (461)
+..+-++.+....+.|++......+++|.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5666777777788899999999999999999999999999999887544 33447776664
No 301
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.71 E-value=6.5 Score=32.25 Aligned_cols=29 Identities=3% Similarity=0.103 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHhccCChhhHHHHHHHHHH
Q 038303 414 VGTFALMSNTFAGADRWEDTNKIRDEIRR 442 (461)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 442 (461)
..+|..+++-+...|+.++|..+|+-...
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 34677777777777777777777665544
No 302
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.47 E-value=1.5 Score=30.41 Aligned_cols=63 Identities=11% Similarity=0.171 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 038303 292 CGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356 (461)
Q Consensus 292 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 356 (461)
+.-++.+-++.+......|++......+++|.+.+++..|.++|+.++.+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 44466777777777888999999999999999999999999999988763432 4446665554
No 303
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.42 E-value=0.27 Score=26.72 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=18.1
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHcCChhhHH
Q 038303 133 HSLRNLNENNIILDNAILDFYIRCGSLASCG 163 (461)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 163 (461)
+.++..+. +...|+.+...|...|++++|+
T Consensus 4 kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 34444333 5666677777777777776664
No 304
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.37 E-value=0.21 Score=38.58 Aligned_cols=87 Identities=16% Similarity=0.180 Sum_probs=66.9
Q ss_pred HHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCCCchhHHHHHHHHHHhcCChHH
Q 038303 113 SVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKE 192 (461)
Q Consensus 113 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 192 (461)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35677788888999999999999887777889999999999999988999998885443 334556677777888888
Q ss_pred HHHHHHHHHh
Q 038303 193 AVSVFQEMEK 202 (461)
Q Consensus 193 a~~~~~~m~~ 202 (461)
|.-++.++..
T Consensus 89 a~~Ly~~~~~ 98 (143)
T PF00637_consen 89 AVYLYSKLGN 98 (143)
T ss_dssp HHHHHHCCTT
T ss_pred HHHHHHHccc
Confidence 8887777644
No 305
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.35 E-value=5.7 Score=30.92 Aligned_cols=83 Identities=18% Similarity=0.205 Sum_probs=42.2
Q ss_pred HcCCChHHHHHHHHHhHhhcCCCCCcchHHH-HHHHHhhcCCHHHHHHHHHhC-CCCchhhHHHHHHHHHHhcCChHHHH
Q 038303 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYAC-VVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDEMFD 400 (461)
Q Consensus 323 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~ 400 (461)
...++.+.+..+++.+.- +.|....... -...+.+.|+|.+|.++|+++ ...|.......|+..|.....-..=.
T Consensus 21 l~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 445677777777766644 3444322221 123355677777777777777 33344444444444444443333334
Q ss_pred HHHHHHhh
Q 038303 401 RIRQDLVN 408 (461)
Q Consensus 401 ~~~~~~~~ 408 (461)
...+++.+
T Consensus 98 ~~A~evle 105 (160)
T PF09613_consen 98 RYADEVLE 105 (160)
T ss_pred HHHHHHHh
Confidence 44444444
No 306
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.33 E-value=2 Score=33.33 Aligned_cols=80 Identities=13% Similarity=0.072 Sum_probs=53.7
Q ss_pred hHHHHHHH---HhhcCCHHHHHHHHHhC-CCCchhhHHHHHHHH-HHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038303 350 HYACVVDM---YGRAGLLEEAEAFIREM-PIEAEWSVWGALLNA-CRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424 (461)
Q Consensus 350 ~~~~l~~~---~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (461)
+.+.|+.. -.+.++.+++..++..+ -.+|.......+-.- +...|++.+|.++|+.+.+..|..+..--.+..++
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 34444443 35678999999999988 455665554443333 78899999999999998887776665444444444
Q ss_pred hccCC
Q 038303 425 AGADR 429 (461)
Q Consensus 425 ~~~g~ 429 (461)
...|+
T Consensus 89 ~~~~D 93 (160)
T PF09613_consen 89 YALGD 93 (160)
T ss_pred HHcCC
Confidence 44443
No 307
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.32 E-value=0.65 Score=24.89 Aligned_cols=32 Identities=16% Similarity=-0.040 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 038303 382 VWGALLNACRIHRNDEMFDRIRQDLVNKKGVS 413 (461)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 413 (461)
.+..+...+...|++++|++.+++..+..|.+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 34556666777888888888888877766653
No 308
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.27 E-value=30 Score=39.13 Aligned_cols=314 Identities=9% Similarity=-0.030 Sum_probs=172.4
Q ss_pred HHHHHhcccchhHHHHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChhhHHHHHhc-CCCCchhHHHHHHHHHHhcCC
Q 038303 113 SVLSACSSLVSHKLGKAIHAHSLRNLN--ENNIILDNAILDFYIRCGSLASCGYLFVK-MPKRNVVSWTTMIGGYAERGF 189 (461)
Q Consensus 113 ~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~li~~~~~~~~ 189 (461)
.+..+-.+.+.+..|...++.-..... ......+..+...|..-+++|....+... ...|+ ...-|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 344455677888888888887411111 11233445555588888998888777763 33333 2233445677899
Q ss_pred hHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHH-HHHHHHHHhcCCHHHHHHH
Q 038303 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQV 268 (461)
Q Consensus 190 ~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~ 268 (461)
+..|...|+.+.+. -++...+++.++..-...+.++...-..+-... ...+....+ +.=+.+--+.++++..+..
T Consensus 1465 ~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~--~~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1465 WADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLII--NRSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred HHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhh--ccCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 99999999999985 344477888888887778887777665554433 222222222 2224444677888877777
Q ss_pred HHHccCCChhhHHHH--HHHHHhcCChH--HHHHHHHHHHhcCCCCC---------HhHHHHHHHHHHcCCChHHHHHHH
Q 038303 269 FNMLAYKDKISWSTV--ISGLAMNGCGR--QALQLFSLMIINAVFPD---------DVTFIALISACSHGGLVDQGLILF 335 (461)
Q Consensus 269 ~~~~~~~~~~~~~~l--~~~~~~~~~~~--~a~~~~~~m~~~g~~p~---------~~~~~~ll~~~~~~~~~~~a~~~~ 335 (461)
.. ..+..+|... ...+.+..+-| .-.+.++.+++.-+.|- ...|..++....- .++-
T Consensus 1541 l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l-------~el~ 1610 (2382)
T KOG0890|consen 1541 LS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLL-------LELE 1610 (2382)
T ss_pred hh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHH-------HHHH
Confidence 66 4555555554 23333322222 12233333333211110 1223333322211 0111
Q ss_pred HHhHhhcCCCCCc------chHHHHHHHHhhcCCHHHHHHHHHhC----CCC-----chhhHHHHHHHHHHhcCChHHHH
Q 038303 336 KAMSTVYEIVPQM------QHYACVVDMYGRAGLLEEAEAFIREM----PIE-----AEWSVWGALLNACRIHRNDEMFD 400 (461)
Q Consensus 336 ~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~-----p~~~~~~~l~~~~~~~~~~~~a~ 400 (461)
+......++.++. ..|..-++.-....+..+-.--+++. ..+ .-..+|-...+.+...|.++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 1111112233322 12221221111111111111111211 112 22336767777788899999999
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcCC
Q 038303 401 RIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445 (461)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 445 (461)
..+-.+.+..+ +..+...++.+...|+...|+.++++-.+...
T Consensus 1691 nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1691 NALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 98887777654 45788899999999999999999999876544
No 309
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.23 E-value=3.2 Score=35.97 Aligned_cols=99 Identities=17% Similarity=0.166 Sum_probs=57.7
Q ss_pred CCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCC-C-----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhH
Q 038303 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-D-----KISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVT 314 (461)
Q Consensus 241 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 314 (461)
|.+.+..+...++..-....+++++...+-++... + ..+-.+.++.+ -.-++++++.++..=++.|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 33334444444444444455666666666555421 1 11111222222 23356677777777777888888888
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHh
Q 038303 315 FIALISACSHGGLVDQGLILFKAMST 340 (461)
Q Consensus 315 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 340 (461)
++.+|..+.+.+++.+|..+.-.|..
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 88888888888888777776665544
No 310
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.14 E-value=0.47 Score=27.00 Aligned_cols=29 Identities=14% Similarity=0.360 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHhccCChhhHHHHHHHHHH
Q 038303 414 VGTFALMSNTFAGADRWEDTNKIRDEIRR 442 (461)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 442 (461)
..+++.++..|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35788899999999999999999988754
No 311
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.87 E-value=0.56 Score=25.28 Aligned_cols=31 Identities=16% Similarity=-0.130 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 038303 382 VWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412 (461)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 412 (461)
+|..+...+...|++++|+..++++++..|.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4566666677777777777777777776654
No 312
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.75 E-value=9.5 Score=32.40 Aligned_cols=152 Identities=15% Similarity=0.225 Sum_probs=83.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHccCC---------------ChhhHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCHh
Q 038303 250 NAVINMYVKCGDVGIAIQVFNMLAYK---------------DKISWSTVISGLAMNGCGRQALQLFSLMIIN-AVFPDDV 313 (461)
Q Consensus 250 ~~li~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~ 313 (461)
..|...|...+.+.+..+++.++.+. -...|..=|+.|...++-.+-..+|++...- ...|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 45666677777777777777666521 1245666777888888877777888776542 2334444
Q ss_pred HHHHHHHHH-----HcCCChHHHHH-HHHHhHhhcCC--CCCc---chHHHHHHHHhhcCCHHHHHHHHH--hC---CCC
Q 038303 314 TFIALISAC-----SHGGLVDQGLI-LFKAMSTVYEI--VPQM---QHYACVVDMYGRAGLLEEAEAFIR--EM---PIE 377 (461)
Q Consensus 314 ~~~~ll~~~-----~~~~~~~~a~~-~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~A~~~~~--~~---~~~ 377 (461)
... +|+-| .+.|++++|-. +|+..+. ..- .|.. .-|..|...+.+.|-- -|+ ++ +..
T Consensus 229 ImG-vIRECGGKMHlreg~fe~AhTDFFEAFKN-YDEsGspRRttCLKYLVLANMLmkS~iN-----PFDsQEAKPyKNd 301 (440)
T KOG1464|consen 229 IMG-VIRECGGKMHLREGEFEKAHTDFFEAFKN-YDESGSPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAKPYKND 301 (440)
T ss_pred HHh-HHHHcCCccccccchHHHHHhHHHHHHhc-ccccCCcchhHHHHHHHHHHHHHHcCCC-----CCcccccCCCCCC
Confidence 433 34433 45678887754 3443332 211 1222 2244555566555410 111 11 344
Q ss_pred chhhHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 038303 378 AEWSVWGALLNACRIHRNDEMFDRIRQDLVNK 409 (461)
Q Consensus 378 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 409 (461)
|.....+.++.+|.. .+..+.+++++.-.+.
T Consensus 302 PEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~~ 332 (440)
T KOG1464|consen 302 PEILAMTNLVAAYQN-NDIIEFERILKSNRSN 332 (440)
T ss_pred HHHHHHHHHHHHHhc-ccHHHHHHHHHhhhcc
Confidence 666677778887744 4566666666554443
No 313
>PRK11619 lytic murein transglycosylase; Provisional
Probab=90.50 E-value=20 Score=35.71 Aligned_cols=420 Identities=6% Similarity=-0.084 Sum_probs=189.1
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCc-eeHHHHHHHHHcCC
Q 038303 13 FTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF-PDV-VSWTTIISGLSKCG 90 (461)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~li~~~~~~~ 90 (461)
|.....+ .+.|++..+.++...+..... .....|..+...+ .....++....+++-.. |-. ..-...+..+.+.+
T Consensus 37 f~~A~~a-~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~ 113 (644)
T PRK11619 37 YQQIKQA-WDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDL-MNQPAVQVTNFIRANPTLPPARSLQSRFVNELARRE 113 (644)
T ss_pred HHHHHHH-HHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhcc-ccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcc
Confidence 4344433 467888888888777643322 2223333333222 13356666666666521 211 11223344555677
Q ss_pred ChHHHHHHHhcCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhh---------
Q 038303 91 FHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLAS--------- 161 (461)
Q Consensus 91 ~~~~a~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--------- 161 (461)
++...++++.. .+.+...-.....+....|+.++|......+=..|.. .+..++.+++.+.+.|.+..
T Consensus 114 ~w~~~~~~~~~--~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d~w~R~~~ 190 (644)
T PRK11619 114 DWRGLLAFSPE--KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLAYLERIRL 190 (644)
T ss_pred CHHHHHHhcCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 77777764322 1223333355566666677766665554444333332 34455556665555554433
Q ss_pred ---------HHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhh---HHHHHHHhhccchhhhH
Q 038303 162 ---------CGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEAT---LVNVLSACSSISALSFG 229 (461)
Q Consensus 162 ---------a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---~~~~l~~~~~~~~~~~a 229 (461)
|..+...+..........++..+ .+...+..++.. ++|+... ....+.-+ ...+.+.|
T Consensus 191 al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~~~~------~~~~~~~~~~~~~~l~Rl-ar~d~~~A 260 (644)
T PRK11619 191 AMKAGNTGLVTYLAKQLPADYQTIASALIKLQ---NDPNTVETFART------TGPTDFTRQMAAVAFASV-ARQDAENA 260 (644)
T ss_pred HHHCCCHHHHHHHHHhcChhHHHHHHHHHHHH---HCHHHHHHHhhc------cCCChhhHHHHHHHHHHH-HHhCHHHH
Confidence 22222222110001111111111 111111111111 1122211 11112222 22344666
Q ss_pred HHHHHHHHhhcCCCCcch--HHHHHHHHHHhcCCHHHHHHHHHHccCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038303 230 KYVHSYISTRYDLSVSNL--VGNAVINMYVKCGDVGIAIQVFNMLAYK--DKISWSTVISGLAMNGCGRQALQLFSLMII 305 (461)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 305 (461)
..++..+....++.+... +...+.......+...++...++..... +.....--+..-.+.++++.+...+..|..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~ 340 (644)
T PRK11619 261 RLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPM 340 (644)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCH
Confidence 666666544333333322 2233333333332255566666554422 333334444444466677776666666643
Q ss_pred cCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhc-----------CCCCC------cch--------HHHHHHHHhh
Q 038303 306 NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY-----------EIVPQ------MQH--------YACVVDMYGR 360 (461)
Q Consensus 306 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~------~~~--------~~~l~~~~~~ 360 (461)
.. .-...-.--+.+++...|+.++|...|+.+.... |.+++ ... --.-+..+..
T Consensus 341 ~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~ 419 (644)
T PRK11619 341 EA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMARVRELMY 419 (644)
T ss_pred hh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHHHHHHHH
Confidence 21 1233334455566556677777777776653310 11100 000 0112344556
Q ss_pred cCCHHHHHHHHHhCCCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcC---CCChhHHHHHHHHHhccCChhhHHHHH
Q 038303 361 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKK---GVSVGTFALMSNTFAGADRWEDTNKIR 437 (461)
Q Consensus 361 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~ 437 (461)
.|+...|...+..+....+......+.......|..+.++.......... -.-+..|...+..+.+.-.++.++-.-
T Consensus 420 ~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~a 499 (644)
T PRK11619 420 WNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMA 499 (644)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHH
Confidence 67777777777666222333444444444566677777766665433210 011223555555555555555554333
Q ss_pred HHHHHcCCcccc
Q 038303 438 DEIRRMGLKKKT 449 (461)
Q Consensus 438 ~~m~~~g~~~~~ 449 (461)
-.-.+.+..|+.
T Consensus 500 i~rqES~f~p~a 511 (644)
T PRK11619 500 IARQESAWNPKA 511 (644)
T ss_pred HHHHhcCCCCCC
Confidence 333455555543
No 314
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.44 E-value=0.34 Score=24.35 Aligned_cols=24 Identities=0% Similarity=0.066 Sum_probs=18.2
Q ss_pred hHHHHHHHHHhccCChhhHHHHHH
Q 038303 415 GTFALMSNTFAGADRWEDTNKIRD 438 (461)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~A~~~~~ 438 (461)
.+...++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345677788888888888888775
No 315
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.37 E-value=1.6 Score=33.22 Aligned_cols=100 Identities=13% Similarity=0.081 Sum_probs=61.2
Q ss_pred cchHHHHHHHH---hhcCCHHHHHHHHHhC-CCCchhhHHHHHHHH-HHhcCChHHHHHHHHHHhhcCCCChhHHHHHHH
Q 038303 348 MQHYACVVDMY---GRAGLLEEAEAFIREM-PIEAEWSVWGALLNA-CRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSN 422 (461)
Q Consensus 348 ~~~~~~l~~~~---~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 422 (461)
..+.+.||+.. ...++.+++..++..| -.+|+..-...+-.- +...|++.+|.++|+.+.+..+..+..--.++.
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~ 86 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLAL 86 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHH
Confidence 34445555443 3578899999999888 445555444333333 678899999999999998877666655555555
Q ss_pred HHhccCChhhHHHHHHHHHHcCCccc
Q 038303 423 TFAGADRWEDTNKIRDEIRRMGLKKK 448 (461)
Q Consensus 423 ~~~~~g~~~~A~~~~~~m~~~g~~~~ 448 (461)
++.-.|+.+ =...-+++.+.|-.|+
T Consensus 87 CL~al~Dp~-Wr~~A~~~le~~~~~~ 111 (153)
T TIGR02561 87 CLNAKGDAE-WHVHADEVLARDADAD 111 (153)
T ss_pred HHHhcCChH-HHHHHHHHHHhCCCHh
Confidence 555556531 1122233345554443
No 316
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.31 E-value=0.82 Score=39.86 Aligned_cols=97 Identities=7% Similarity=-0.029 Sum_probs=70.8
Q ss_pred HHHHHcCCChHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHhhcCCHHHHHHHHHhC-C-CCchhhHHHHHHHHHHhcCC
Q 038303 319 ISACSHGGLVDQGLILFKAMSTVYEIVP-QMQHYACVVDMYGRAGLLEEAEAFIREM-P-IEAEWSVWGALLNACRIHRN 395 (461)
Q Consensus 319 l~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~ 395 (461)
..-|.++|.+++|+..|..... ..| ++.++..-..+|.+..++..|+.-.... . .+.-...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 5568899999999999987755 344 7888888888999999998888776665 1 11223345555555556788
Q ss_pred hHHHHHHHHHHhhcCCCChhHHH
Q 038303 396 DEMFDRIRQDLVNKKGVSVGTFA 418 (461)
Q Consensus 396 ~~~a~~~~~~~~~~~~~~~~~~~ 418 (461)
.++|.+-++.+++..|.+...-.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELkK 203 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELKK 203 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHHH
Confidence 88899989988888888654433
No 317
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=90.09 E-value=15 Score=33.72 Aligned_cols=91 Identities=14% Similarity=0.085 Sum_probs=58.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC--CCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccC
Q 038303 351 YACVVDMYGRAGLLEEAEAFIREMP--IEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428 (461)
Q Consensus 351 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (461)
...|+.-|.-.|+..+|.+.+++++ .-.....+.+++.+..+.++-+....+++.... ....|-+.|-++|.+-.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~---sglIT~nQMtkGf~RV~ 588 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFK---SGLITTNQMTKGFERVY 588 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh---cCceeHHHhhhhhhhhh
Confidence 3457788888899999999998874 335666788888888888887766666555433 23345556666665543
Q ss_pred C--------hhhHHHHHHHHHHcC
Q 038303 429 R--------WEDTNKIRDEIRRMG 444 (461)
Q Consensus 429 ~--------~~~A~~~~~~m~~~g 444 (461)
+ ...|.+.|+...+.+
T Consensus 589 dsl~DlsLDvPna~ekf~~~Ve~~ 612 (645)
T KOG0403|consen 589 DSLPDLSLDVPNAYEKFERYVEEC 612 (645)
T ss_pred ccCcccccCCCcHHHHHHHHHHHH
Confidence 2 344555555544433
No 318
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.87 E-value=2.5 Score=29.75 Aligned_cols=48 Identities=21% Similarity=0.244 Sum_probs=32.9
Q ss_pred CCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHH
Q 038303 375 PIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSN 422 (461)
Q Consensus 375 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 422 (461)
..-|++....+.+++|.+.+++..|.++++.++....+....|..+++
T Consensus 40 DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 40 DLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp SB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 566888888888888888888888888888888755444446666654
No 319
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.81 E-value=8.5 Score=30.38 Aligned_cols=134 Identities=13% Similarity=0.074 Sum_probs=69.2
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHcCCChHHHHHHHhcCCCCCCchh
Q 038303 31 EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANT 110 (461)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~p~~~~ 110 (461)
+.+..+.+.++.|+...|..++..+.+.|++....+++..-+-+|.......+-.+..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~---------------------- 72 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGN---------------------- 72 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHc----------------------
Confidence 3444455566777777777777777777776666666655433333222222211111
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCCCchhHHHHHHHHHHhcCCh
Q 038303 111 LVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFC 190 (461)
Q Consensus 111 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~ 190 (461)
....+.++--.|.++ =...+..+++.+...|++-+|.++.+....-+......++.+..+.+|.
T Consensus 73 ------------~~~~~~Ql~lDMLkR----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~ 136 (167)
T PF07035_consen 73 ------------QYPPAYQLGLDMLKR----LGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDD 136 (167)
T ss_pred ------------cChHHHHHHHHHHHH----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCH
Confidence 111122222222222 0012345666677777877777777776544444455566666666665
Q ss_pred HHHHHHHHHHHh
Q 038303 191 KEAVSVFQEMEK 202 (461)
Q Consensus 191 ~~a~~~~~~m~~ 202 (461)
.-=..+|+-..+
T Consensus 137 ~lf~~V~~ff~~ 148 (167)
T PF07035_consen 137 QLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHHHHH
Confidence 554444444443
No 320
>PRK09687 putative lyase; Provisional
Probab=89.80 E-value=13 Score=32.52 Aligned_cols=73 Identities=12% Similarity=0.073 Sum_probs=34.5
Q ss_pred cchHHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 038303 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322 (461)
Q Consensus 245 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 322 (461)
+..+-...+.++.+.|+..-...+.+.+..++ .....+.++...|.. +|...+..+.+. .||...-...+.+|
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 44444555555566555332222333333333 223455566666664 466666665542 23554444444443
No 321
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.74 E-value=0.47 Score=25.21 Aligned_cols=29 Identities=0% Similarity=0.067 Sum_probs=24.1
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHHcC
Q 038303 416 TFALMSNTFAGADRWEDTNKIRDEIRRMG 444 (461)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 444 (461)
++..++.++.+.|++++|.+.|+++.+.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 46678888899999999999999987653
No 322
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=89.54 E-value=18 Score=33.86 Aligned_cols=145 Identities=10% Similarity=-0.048 Sum_probs=75.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhc
Q 038303 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKC 259 (461)
Q Consensus 180 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 259 (461)
++.-..+..+++.-++.-++..+ +.||..+.-.+ -+--......++++++++..+ .+- +.+ .+.
T Consensus 174 IMq~AWRERnp~aRIkaA~eALe---i~pdCAdAYIL-LAEEeA~Ti~Eae~l~rqAvk-AgE-------~~l----g~s 237 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALE---INPDCADAYIL-LAEEEASTIVEAEELLRQAVK-AGE-------ASL----GKS 237 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH---hhhhhhHHHhh-cccccccCHHHHHHHHHHHHH-HHH-------Hhh----chh
Confidence 34444556666666666666666 55554332222 222233446667777776655 110 000 000
Q ss_pred CCHHHHHHHHHHccCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHhHHHHHHHHHHcCCChHHHHHH
Q 038303 260 GDVGIAIQVFNMLAYKD----KISWSTVISGLAMNGCGRQALQLFSLMIINAVFP-DDVTFIALISACSHGGLVDQGLIL 334 (461)
Q Consensus 260 g~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 334 (461)
...+..-..++....++ ...-..+..++-+.|+.++|.+.+++|.+....- .......|+.++...+.+.++..+
T Consensus 238 ~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 238 QFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred hhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 00001011112222222 2223345666667888888888888887643221 224566788888888888888888
Q ss_pred HHHhHh
Q 038303 335 FKAMST 340 (461)
Q Consensus 335 ~~~~~~ 340 (461)
+.+-.+
T Consensus 318 L~kYdD 323 (539)
T PF04184_consen 318 LAKYDD 323 (539)
T ss_pred HHHhcc
Confidence 877643
No 323
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.27 E-value=2.9 Score=29.06 Aligned_cols=48 Identities=23% Similarity=0.257 Sum_probs=33.5
Q ss_pred CCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHH
Q 038303 375 PIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSN 422 (461)
Q Consensus 375 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 422 (461)
..-|++....+.+++|.+.+|+..|.++++-++.....+...|..+++
T Consensus 37 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 37 DLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 556777778888888888888888888888777544434445655553
No 324
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.16 E-value=0.7 Score=26.89 Aligned_cols=28 Identities=11% Similarity=0.191 Sum_probs=23.4
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHcCC
Q 038303 418 ALMSNTFAGADRWEDTNKIRDEIRRMGL 445 (461)
Q Consensus 418 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 445 (461)
..++++|...|+.+.|.++++++...|-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 3578899999999999999999986554
No 325
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.14 E-value=10 Score=30.77 Aligned_cols=92 Identities=11% Similarity=0.039 Sum_probs=61.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCH-----hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCC-cchHHHHHHHH
Q 038303 285 SGLAMNGCGRQALQLFSLMIINAVFPDD-----VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ-MQHYACVVDMY 358 (461)
Q Consensus 285 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 358 (461)
.-+...|++++|..-|.+.++.- +|.. ..|..-..++.+.+.++.|+.-..+..+ +.|+ ......-..+|
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEAY 178 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHHH
Confidence 45778999999999999988863 3322 2244444567788888888887776665 2232 23333345678
Q ss_pred hhcCCHHHHHHHHHhC-CCCchh
Q 038303 359 GRAGLLEEAEAFIREM-PIEAEW 380 (461)
Q Consensus 359 ~~~g~~~~A~~~~~~~-~~~p~~ 380 (461)
.+..++++|+.-+..+ ...|..
T Consensus 179 ek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcch
Confidence 8888999999888887 444443
No 326
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.79 E-value=3.1 Score=31.79 Aligned_cols=72 Identities=18% Similarity=0.189 Sum_probs=47.2
Q ss_pred hHHHHHHHH---HHcCCChHHHHHHHHHhHhhcCCCCC---cchHHHHHHHHhhcCCHHHHHHHHHhCCCCchhhHHHHH
Q 038303 313 VTFIALISA---CSHGGLVDQGLILFKAMSTVYEIVPQ---MQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 386 (461)
Q Consensus 313 ~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 386 (461)
...+.|+.. -...++.+++..+++.|.- +.|+ ..++. .-.+...|+|.+|.++|++....+....|..-
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrv---LrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kA 82 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRV---LRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKA 82 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHH
Confidence 344444443 3458999999999999965 4555 34444 33467899999999999999444333334333
Q ss_pred HHH
Q 038303 387 LNA 389 (461)
Q Consensus 387 ~~~ 389 (461)
+.+
T Consensus 83 L~A 85 (153)
T TIGR02561 83 LLA 85 (153)
T ss_pred HHH
Confidence 344
No 327
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.59 E-value=1.1 Score=23.99 Aligned_cols=29 Identities=3% Similarity=0.177 Sum_probs=23.8
Q ss_pred hHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 038303 415 GTFALMSNTFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 443 (461)
.+|..++..|...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46788888899999999999998887653
No 328
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.21 E-value=6.3 Score=37.54 Aligned_cols=151 Identities=14% Similarity=0.045 Sum_probs=89.3
Q ss_pred HcCCChHHHHHHHhcCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHH
Q 038303 87 SKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLF 166 (461)
Q Consensus 87 ~~~~~~~~a~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 166 (461)
.-.|+++.|..++... | ...-+.+.+.+.+.|-.++|.++ .+|... -.....+.|+++.|.++.
T Consensus 597 vmrrd~~~a~~vLp~I---~-k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la 660 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTI---P-KEIRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLA 660 (794)
T ss_pred hhhccccccccccccC---c-hhhhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHH
Confidence 3446666666655433 1 22344455555666666555543 223222 223455778888888877
Q ss_pred hcCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcc
Q 038303 167 VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246 (461)
Q Consensus 167 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 246 (461)
.+.. +..-|..|..+..+.+++..|.+.|....+.+ .++-.+...|+.+....+-....+ .|..
T Consensus 661 ~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~----------~LlLl~t~~g~~~~l~~la~~~~~-~g~~--- 724 (794)
T KOG0276|consen 661 VEAN--SEVKWRQLGDAALSAGELPLASECFLRARDLG----------SLLLLYTSSGNAEGLAVLASLAKK-QGKN--- 724 (794)
T ss_pred Hhhc--chHHHHHHHHHHhhcccchhHHHHHHhhcchh----------hhhhhhhhcCChhHHHHHHHHHHh-hccc---
Confidence 6654 56678899999999999999999888876643 455555556665554444444433 2221
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHc
Q 038303 247 LVGNAVINMYVKCGDVGIAIQVFNML 272 (461)
Q Consensus 247 ~~~~~li~~~~~~g~~~~a~~~~~~~ 272 (461)
|....+|...|+++++.+++.+-
T Consensus 725 ---N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 725 ---NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ---chHHHHHHHcCCHHHHHHHHHhc
Confidence 33344555666776666665443
No 329
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.14 E-value=14 Score=30.79 Aligned_cols=49 Identities=16% Similarity=0.007 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHhC-----CCCchhhHHHHHHHH---HHhcCChHHHHHHHHHHhhcC
Q 038303 362 GLLEEAEAFIREM-----PIEAEWSVWGALLNA---CRIHRNDEMFDRIRQDLVNKK 410 (461)
Q Consensus 362 g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~ 410 (461)
.+++.|+..++.. +.+.+...-..++.+ -...+++..|+.+|+++....
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666655 223333333444444 467799999999999988744
No 330
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.13 E-value=28 Score=34.12 Aligned_cols=154 Identities=12% Similarity=0.026 Sum_probs=76.2
Q ss_pred HhcCChHHHHHHHHHHHh-------cCCCCCHhHHHHHHHHHHcCC-----ChHHHHHHHHHhHhhcCCCCCcchHHHHH
Q 038303 288 AMNGCGRQALQLFSLMII-------NAVFPDDVTFIALISACSHGG-----LVDQGLILFKAMSTVYEIVPQMQHYACVV 355 (461)
Q Consensus 288 ~~~~~~~~a~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 355 (461)
....+.+.|+..++...+ .| .......+..+|.+.. +.+.|..++..... .|. |+....-..+
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~-~g~-~~a~~~lg~~ 334 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE-LGN-PDAQYLLGVL 334 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh-cCC-chHHHHHHHH
Confidence 344566666666666655 44 2223444555555432 45667777766665 343 3332222222
Q ss_pred HHHhh-cCCHHHHHHHHHhCCCCchhhHHHHHHHHH----HhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCCh
Q 038303 356 DMYGR-AGLLEEAEAFIREMPIEAEWSVWGALLNAC----RIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRW 430 (461)
Q Consensus 356 ~~~~~-~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 430 (461)
..... ..+...|.++|......-....+..+...| ....+.+.|..+++++-+..++....-......+.. +++
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~ 413 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRY 413 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccc
Confidence 11111 234567777777762222222222222221 234567777777777776554332222233333333 677
Q ss_pred hhHHHHHHHHHHcCCcc
Q 038303 431 EDTNKIRDEIRRMGLKK 447 (461)
Q Consensus 431 ~~A~~~~~~m~~~g~~~ 447 (461)
+.+.-.+..+.+.|...
T Consensus 414 ~~~~~~~~~~a~~g~~~ 430 (552)
T KOG1550|consen 414 DTALALYLYLAELGYEV 430 (552)
T ss_pred cHHHHHHHHHHHhhhhH
Confidence 77766666666666543
No 331
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.67 E-value=31 Score=34.24 Aligned_cols=49 Identities=14% Similarity=0.027 Sum_probs=27.3
Q ss_pred CcchHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhc
Q 038303 9 NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV 58 (461)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 58 (461)
|......+|-.|.|.|++++|.++.....+ ........+...+..|...
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 444455666677777777777777744433 2333444555566666543
No 332
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.59 E-value=3.6 Score=36.08 Aligned_cols=94 Identities=17% Similarity=0.063 Sum_probs=62.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCC-CHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcC
Q 038303 284 ISGLAMNGCGRQALQLFSLMIINAVFP-DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362 (461)
Q Consensus 284 ~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 362 (461)
..-|.++|.+++|+..|..-.. +.| +.+++..-..+|.+...+..|+.=....... -..-+..|+.-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHHh
Confidence 3568999999999999998877 456 8899999999999999998887766665541 0111233333333333445
Q ss_pred CHHHHHHHHHhC-CCCchhh
Q 038303 363 LLEEAEAFIREM-PIEAEWS 381 (461)
Q Consensus 363 ~~~~A~~~~~~~-~~~p~~~ 381 (461)
...+|.+-++.. ..+|+..
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred hHHHHHHhHHHHHhhCcccH
Confidence 555665555554 5566633
No 333
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.20 E-value=1.4 Score=23.64 Aligned_cols=30 Identities=7% Similarity=-0.146 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 038303 382 VWGALLNACRIHRNDEMFDRIRQDLVNKKG 411 (461)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 411 (461)
+|..+...|...|+++.|...|++..+..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 345555667777777777777777776555
No 334
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.34 E-value=18 Score=31.23 Aligned_cols=57 Identities=12% Similarity=0.057 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHH
Q 038303 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYI 236 (461)
Q Consensus 178 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~ 236 (461)
+.....|..+|.+.+|.++.++.... .+.+...+-.++..+...|+--.+..-++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltl--dpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTL--DPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 33445566677777777776666664 3445556666666666666654444444433
No 335
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.70 E-value=4.1 Score=34.95 Aligned_cols=60 Identities=10% Similarity=-0.044 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHH
Q 038303 382 VWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIR 441 (461)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 441 (461)
+++.....|...|.+.+|.++.++.....|-+...+..++..+...|+--.|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344455668899999999999999999999999999999999999999888888887773
No 336
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.42 E-value=2.2 Score=24.07 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038303 175 VSWTTMIGGYAERGFCKEAVSVFQEMEK 202 (461)
Q Consensus 175 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 202 (461)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677778888888888888888887754
No 337
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.24 E-value=1.9 Score=22.71 Aligned_cols=27 Identities=11% Similarity=-0.081 Sum_probs=19.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCC
Q 038303 386 LLNACRIHRNDEMFDRIRQDLVNKKGV 412 (461)
Q Consensus 386 l~~~~~~~~~~~~a~~~~~~~~~~~~~ 412 (461)
+..++.+.|+.++|.+.|+++++..|.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444566677888888888887776664
No 338
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=84.24 E-value=22 Score=29.32 Aligned_cols=28 Identities=25% Similarity=0.190 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHhHh
Q 038303 313 VTFIALISACSHGGLVDQGLILFKAMST 340 (461)
Q Consensus 313 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 340 (461)
.||--+.+-+...|+.++|..+|+-...
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3555556666666666666666655544
No 339
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.70 E-value=8.9 Score=31.16 Aligned_cols=77 Identities=12% Similarity=0.085 Sum_probs=53.8
Q ss_pred HHhhcCCHHHHHHHHHhCCCCc--hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcC----CCChhHHHHHHHHHhccCCh
Q 038303 357 MYGRAGLLEEAEAFIREMPIEA--EWSVWGALLNACRIHRNDEMFDRIRQDLVNKK----GVSVGTFALMSNTFAGADRW 430 (461)
Q Consensus 357 ~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~ 430 (461)
.+.+.|+ +.|.+.|-.+...| +....-..+..|-...|.+.++.++-++.+.. ..|+..+..|+..|.+.|++
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 3455555 56677666662233 22333334445666888999999999988732 56799999999999999999
Q ss_pred hhHH
Q 038303 431 EDTN 434 (461)
Q Consensus 431 ~~A~ 434 (461)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8875
No 340
>PHA02875 ankyrin repeat protein; Provisional
Probab=82.84 E-value=27 Score=32.61 Aligned_cols=144 Identities=13% Similarity=0.056 Sum_probs=75.4
Q ss_pred HHHHhhCCHHHHHHHHHHHHHhCCCccHHH--HHHHHHHHHhcCCHHHHHHHHhhCCCCCce--eHHHHHHHHHcCCChH
Q 038303 18 KACSLAHPHQKALEIHAHVIEYGHLHDIFI--QNSLLHFYVTVKDIFSAHQIFNSVVFPDVV--SWTTIISGLSKCGFHK 93 (461)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~~~~~ 93 (461)
...++.|+.+-+. .+.+.|..|+... ..+.+...++.|+.+-+.-+++.-..++.. ...+.+...++.|+.+
T Consensus 7 ~~A~~~g~~~iv~----~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~ 82 (413)
T PHA02875 7 CDAILFGELDIAR----RLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVK 82 (413)
T ss_pred HHHHHhCCHHHHH----HHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHH
Confidence 3445667765544 4445676665432 234556666788888777777655333321 1123344556778887
Q ss_pred HHHHHHhcCCCC---CCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhH--HHHHHHHHHHcCChhhHHHHHhc
Q 038303 94 EAIDMFCGIDVK---PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL--DNAILDFYIRCGSLASCGYLFVK 168 (461)
Q Consensus 94 ~a~~~~~~m~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~ 168 (461)
.+..+++.-... .+..- .+.+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+-+..+++.
T Consensus 83 ~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ 157 (413)
T PHA02875 83 AVEELLDLGKFADDVFYKDG-MTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH 157 (413)
T ss_pred HHHHHHHcCCcccccccCCC-CCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 777766543111 11111 1223333445554 34445556666554322 12345556677777776666665
Q ss_pred CC
Q 038303 169 MP 170 (461)
Q Consensus 169 ~~ 170 (461)
-.
T Consensus 158 g~ 159 (413)
T PHA02875 158 KA 159 (413)
T ss_pred CC
Confidence 43
No 341
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.64 E-value=13 Score=32.49 Aligned_cols=96 Identities=8% Similarity=0.071 Sum_probs=66.5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHH
Q 038303 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINA---VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352 (461)
Q Consensus 276 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 352 (461)
...+...++..-...++++.++..+-+++... ..|+.. ....++.| -.-+.++++.++..=.. .|+-||..+++
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIq-YGiF~dqf~~c 139 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQ-YGIFPDQFTFC 139 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcch-hccccchhhHH
Confidence 44555666666666778888888888876531 222222 22333333 33466688888777777 78889999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC
Q 038303 353 CVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 353 ~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
.+++.+.+.+++.+|.++...|
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHH
Confidence 9999999999999888887766
No 342
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=81.79 E-value=59 Score=32.41 Aligned_cols=184 Identities=11% Similarity=0.077 Sum_probs=88.2
Q ss_pred HhcCCHHHHHHHHHHccCC-----C-----hhhHHHHHH--HHHhcCChHHHHHHHH--------HHHhcCCCCCHhHHH
Q 038303 257 VKCGDVGIAIQVFNMLAYK-----D-----KISWSTVIS--GLAMNGCGRQALQLFS--------LMIINAVFPDDVTFI 316 (461)
Q Consensus 257 ~~~g~~~~a~~~~~~~~~~-----~-----~~~~~~l~~--~~~~~~~~~~a~~~~~--------~m~~~g~~p~~~~~~ 316 (461)
+-.+++..|...++.+... + ...+...+. .+...|+.+.|+..|. .....+..++...+.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 3457787788777766621 1 122222222 3445688999999997 444444444444443
Q ss_pred HH----HHHHHcCCChHH--HHHHHHHhHhhcCCCCC--cchHHHH-HHHHhhc---------CCHHHHHHHH-HhCCCC
Q 038303 317 AL----ISACSHGGLVDQ--GLILFKAMSTVYEIVPQ--MQHYACV-VDMYGRA---------GLLEEAEAFI-REMPIE 377 (461)
Q Consensus 317 ~l----l~~~~~~~~~~~--a~~~~~~~~~~~~~~~~--~~~~~~l-~~~~~~~---------g~~~~A~~~~-~~~~~~ 377 (461)
.+ |.-+......++ +.++++.+.....-.|+ ..++..+ +.++... ..+.++++.. +..+..
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 32 111222223333 67777766552222332 2222333 3333211 1122333333 222221
Q ss_pred chhhHHHHHHHH-HHhcCChHHHHHHHHHHhhcC---CC-ChhHHH-----HHHHHHhccCChhhHHHHHHHHH
Q 038303 378 AEWSVWGALLNA-CRIHRNDEMFDRIRQDLVNKK---GV-SVGTFA-----LMSNTFAGADRWEDTNKIRDEIR 441 (461)
Q Consensus 378 p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~-----~l~~~~~~~g~~~~A~~~~~~m~ 441 (461)
--....-.++.. +. .|+..+...........- +. ....|. .+...+...|+.++|.....+..
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 112222333444 33 677777655555544311 11 233442 34445777899999998887764
No 343
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=81.59 E-value=48 Score=31.34 Aligned_cols=159 Identities=8% Similarity=0.032 Sum_probs=106.6
Q ss_pred CceeHHHHHHHHHcCCChHHHHHHHhcC-CCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038303 75 DVVSWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFY 153 (461)
Q Consensus 75 ~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 153 (461)
|....-+++..+..+.+..-...+..+| ...-+...|..++..|... ..+.-..+++++++..+. |.+.-..|...|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 4455667788888777777777777777 5556667788888888877 556677788888777665 555556666666
Q ss_pred HHcCChhhHHHHHhcCCCC---------chhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccc
Q 038303 154 IRCGSLASCGYLFVKMPKR---------NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224 (461)
Q Consensus 154 ~~~g~~~~a~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~ 224 (461)
-+ ++.+.+..+|.++..+ -...|.-++.. -..+.+..+.+..+.....+..--...+..+-.-|....
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 66 7777777777766421 11245555432 134566666666666555435555666666667788888
Q ss_pred hhhhHHHHHHHHHh
Q 038303 225 ALSFGKYVHSYIST 238 (461)
Q Consensus 225 ~~~~a~~~~~~~~~ 238 (461)
++.++.+++..+.+
T Consensus 220 N~~eai~Ilk~il~ 233 (711)
T COG1747 220 NWTEAIRILKHILE 233 (711)
T ss_pred CHHHHHHHHHHHhh
Confidence 88888888886665
No 344
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=81.35 E-value=11 Score=27.91 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 038303 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 295 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
+..+-+..+....+.|++......+++|.+.+++..|.++|+.++.+.| +....|..+++ +..-+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g--~~k~~Y~y~v~---------elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG--AQKQVYPYYVK---------ELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc--cHHHHHHHHHH---------HHHHHHHHh
Confidence 4556667777778999999999999999999999999999998887433 44445655543 344455666
Q ss_pred CC
Q 038303 375 PI 376 (461)
Q Consensus 375 ~~ 376 (461)
++
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 44
No 345
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.16 E-value=61 Score=32.25 Aligned_cols=47 Identities=17% Similarity=0.128 Sum_probs=32.4
Q ss_pred CceeHHHHHHHHHcCCChHHHHHHHhcC--CCCCCchhHHHHHHHhccc
Q 038303 75 DVVSWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSVLSACSSL 121 (461)
Q Consensus 75 ~~~~~~~li~~~~~~~~~~~a~~~~~~m--~~~p~~~~~~~ll~~~~~~ 121 (461)
|...--.+|--+.+.|++++|.++..+. ........|...+..+...
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 3344456777788999999999999555 4555666777888887665
No 346
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.38 E-value=4.6 Score=26.93 Aligned_cols=46 Identities=22% Similarity=0.101 Sum_probs=22.2
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCH--hHHHHHHHHHHcCCChHHHHHH
Q 038303 289 MNGCGRQALQLFSLMIINAVFPDD--VTFIALISACSHGGLVDQGLIL 334 (461)
Q Consensus 289 ~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~ 334 (461)
..++.++|+..|....+.-..|.. .++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555543222221 3445555555555555555443
No 347
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=80.11 E-value=15 Score=25.17 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHcCCChHHHH
Q 038303 28 KALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAI 96 (461)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 96 (461)
.+.++++.+.+.|+- +......+-.+-...|+.+.|.++++.++ ..+..|..++.++-..|.-.-|.
T Consensus 20 ~~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 20 KTRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred hHHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 466788888888863 44444444433346789999999999998 78888999999998888765554
No 348
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=79.79 E-value=7.3 Score=32.47 Aligned_cols=116 Identities=11% Similarity=0.027 Sum_probs=66.2
Q ss_pred HHcCCChHHHHHHHHHhHhhcCCCCCc-chHHHHHHHHhhcCCHHHHHHHHHhC-CCCchhhHHHHHHHH-HHhcCChHH
Q 038303 322 CSHGGLVDQGLILFKAMSTVYEIVPQM-QHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALLNA-CRIHRNDEM 398 (461)
Q Consensus 322 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~-~~~~~~~~~ 398 (461)
|.....++.|+..|.+... +.|+. .-|..=+.++.+..+++.+..--++. .+.|+..--..++.. ......+++
T Consensus 20 ~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 5556667777776655544 45665 33445566667777777776665555 555665544444444 566677777
Q ss_pred HHHHHHHHhh-----cCCCChhHHHHHHHHHhccCChhhHHHHHHHH
Q 038303 399 FDRIRQDLVN-----KKGVSVGTFALMSNTFAGADRWEDTNKIRDEI 440 (461)
Q Consensus 399 a~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 440 (461)
|+..+.+... ..++.......|..+-...=...+..++.++.
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 7777777643 12333445555555544433444455555443
No 349
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.38 E-value=22 Score=34.22 Aligned_cols=150 Identities=15% Similarity=0.033 Sum_probs=75.0
Q ss_pred hhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHcCCChHHHHHHHhc
Q 038303 22 LAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG 101 (461)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 101 (461)
-.|+++.|..++-.+. ....+.+...+-+.|-.++|+++- +|+.. -.....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s-----~D~d~---rFelal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS-----TDPDQ---RFELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC-----CChhh---hhhhhhhcCcHHHHHHHHHh
Confidence 4455555555443322 224455666666677766666532 22211 12233455666666666544
Q ss_pred CCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCCCchhHHHHHH
Q 038303 102 IDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMI 181 (461)
Q Consensus 102 m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li 181 (461)
. .+..-|..|.++....+++..|.+.|...... ..|+-.+...|+.+....+-....+. -..|.-.
T Consensus 663 ~---~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~la~~~~~~--g~~N~AF 728 (794)
T KOG0276|consen 663 A---NSEVKWRQLGDAALSAGELPLASECFLRARDL---------GSLLLLYTSSGNAEGLAVLASLAKKQ--GKNNLAF 728 (794)
T ss_pred h---cchHHHHHHHHHHhhcccchhHHHHHHhhcch---------hhhhhhhhhcCChhHHHHHHHHHHhh--cccchHH
Confidence 3 23445666666666667777776666654433 33444444455544333322222210 0112222
Q ss_pred HHHHhcCChHHHHHHHHHH
Q 038303 182 GGYAERGFCKEAVSVFQEM 200 (461)
Q Consensus 182 ~~~~~~~~~~~a~~~~~~m 200 (461)
.+|...|+++++.+++.+-
T Consensus 729 ~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHcCCHHHHHHHHHhc
Confidence 3456677777777666654
No 350
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.28 E-value=20 Score=29.19 Aligned_cols=43 Identities=9% Similarity=0.030 Sum_probs=18.4
Q ss_pred CCChHHHHHHHHHhHhhc--CCCCCcchHHHHHHHHhhcCCHHHH
Q 038303 325 GGLVDQGLILFKAMSTVY--EIVPQMQHYACVVDMYGRAGLLEEA 367 (461)
Q Consensus 325 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A 367 (461)
..+.+++..++.+..+.. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444433311 1133444445555555555544444
No 351
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=78.23 E-value=15 Score=25.09 Aligned_cols=66 Identities=11% Similarity=-0.006 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHH
Q 038303 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAV 194 (461)
Q Consensus 127 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 194 (461)
+.++++.+.+.|+- +......+-.+-...|+.+.|.+++..++ +....|..++.++-..|.-.-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 45667777777644 33333333322235578888888888888 77778888888887777655443
No 352
>PF13934 ELYS: Nuclear pore complex assembly
Probab=77.67 E-value=42 Score=28.28 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=11.3
Q ss_pred HHHHHhhcCCHHHHHHHHHhC
Q 038303 354 VVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 354 l~~~~~~~g~~~~A~~~~~~~ 374 (461)
++.++...|+.+.|+.+++..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhc
Confidence 444444455555555555555
No 353
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=77.60 E-value=89 Score=32.22 Aligned_cols=71 Identities=6% Similarity=-0.055 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCH
Q 038303 294 RQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364 (461)
Q Consensus 294 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 364 (461)
+.-.+.|.++..---.-|..++..-..-+...|++-.|.+++.++.+..+-.++...|..++..+...|--
T Consensus 1213 d~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~ 1283 (1304)
T KOG1114|consen 1213 DSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN 1283 (1304)
T ss_pred hhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch
Confidence 33444454444321122444444444445567777788887777777666777777777666666666543
No 354
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.58 E-value=7.1 Score=22.73 Aligned_cols=26 Identities=27% Similarity=0.187 Sum_probs=20.2
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhC
Q 038303 15 QALKACSLAHPHQKALEIHAHVIEYG 40 (461)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~~~~~~~~~ 40 (461)
.+..+|...|+.+.|..+++++.+.|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35677888888888888888888654
No 355
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.51 E-value=3.9 Score=20.68 Aligned_cols=27 Identities=4% Similarity=0.169 Sum_probs=19.2
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHH
Q 038303 416 TFALMSNTFAGADRWEDTNKIRDEIRR 442 (461)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 442 (461)
+|..++..+...|++++|...+++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 566677777777777777777766654
No 356
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.10 E-value=38 Score=27.50 Aligned_cols=89 Identities=8% Similarity=-0.007 Sum_probs=64.2
Q ss_pred HHhcccchhHHHHHHHHHHHhhcCCCC--hhHHHHHHHHHHHcCChhhHHHHHhcCCCCchhH--HHHHHHHHHhcCChH
Q 038303 116 SACSSLVSHKLGKAIHAHSLRNLNENN--IILDNAILDFYIRCGSLASCGYLFVKMPKRNVVS--WTTMIGGYAERGFCK 191 (461)
Q Consensus 116 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~~~~~ 191 (461)
..+...++++.|...++..+......+ ..+--.|.+.....|.+|+|+..++....++-.. ...-...+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 346777888888888887664321111 2223446677888999999999999988765433 444456789999999
Q ss_pred HHHHHHHHHHhcC
Q 038303 192 EAVSVFQEMEKTK 204 (461)
Q Consensus 192 ~a~~~~~~m~~~~ 204 (461)
+|..-|.+....+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 9999999998864
No 357
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=76.83 E-value=69 Score=30.39 Aligned_cols=165 Identities=8% Similarity=0.026 Sum_probs=69.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHcc--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCCh
Q 038303 251 AVINMYVKCGDVGIAIQVFNMLA--YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328 (461)
Q Consensus 251 ~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 328 (461)
+++..++.+-...-++.+-.+|. ..+-..|..+++.|..+ ..++-..+|+++.+..+. |.+.-..|..-|.+ ++.
T Consensus 71 ~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk-ik~ 147 (711)
T COG1747 71 TLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYEK-IKK 147 (711)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHHH-hch
Confidence 34444444444444444444443 22344455555555555 344555555555554332 22222223332322 555
Q ss_pred HHHHHHHHHhHhhcCCCCC------cchHHHHHHHHhhcCCHHHHHHHHHhC----CCCchhhHHHHHHHHHHhcCChHH
Q 038303 329 DQGLILFKAMSTVYEIVPQ------MQHYACVVDMYGRAGLLEEAEAFIREM----PIEAEWSVWGALLNACRIHRNDEM 398 (461)
Q Consensus 329 ~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~~~~~~ 398 (461)
+.+..+|.++.. .+-|. ...|..|...- ..+.+....+..++ +...-...+.-+-.-|....++++
T Consensus 148 sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~e 223 (711)
T COG1747 148 SKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTE 223 (711)
T ss_pred hhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHH
Confidence 555555555544 12221 12233332211 22334444443333 222222233333344555566666
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHH
Q 038303 399 FDRIRQDLVNKKGVSVGTFALMSN 422 (461)
Q Consensus 399 a~~~~~~~~~~~~~~~~~~~~l~~ 422 (461)
|++++..+.+.+..+..+-..++.
T Consensus 224 ai~Ilk~il~~d~k~~~ar~~~i~ 247 (711)
T COG1747 224 AIRILKHILEHDEKDVWARKEIIE 247 (711)
T ss_pred HHHHHHHHhhhcchhhhHHHHHHH
Confidence 666666555544444444444433
No 358
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=76.31 E-value=7.9 Score=20.04 Aligned_cols=30 Identities=17% Similarity=0.052 Sum_probs=22.2
Q ss_pred CChHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 038303 394 RNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423 (461)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 423 (461)
|+.+.+..+|+++....|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 456778888888888777777777766643
No 359
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.29 E-value=16 Score=30.74 Aligned_cols=54 Identities=4% Similarity=-0.074 Sum_probs=37.8
Q ss_pred HHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 038303 390 CRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 443 (461)
+...|++-++++-...+....|.+..+|..-+++.+..=+.++|..=|..+.+.
T Consensus 240 ~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 240 LLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 445677777777777777777777777777777777777777777766666554
No 360
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.01 E-value=41 Score=27.33 Aligned_cols=56 Identities=7% Similarity=0.030 Sum_probs=34.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHccCCChhh--HHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 038303 252 VINMYVKCGDVGIAIQVFNMLAYKDKIS--WSTVISGLAMNGCGRQALQLFSLMIINA 307 (461)
Q Consensus 252 li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~m~~~g 307 (461)
|.+.....|.+++|...++....++-.. ...-.+.+...|+-++|..-|.+..+.+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 4455566677777777776666553322 3334456666677777777777666654
No 361
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=75.90 E-value=40 Score=29.08 Aligned_cols=84 Identities=7% Similarity=-0.140 Sum_probs=54.6
Q ss_pred HHHHHHhcCCHHHHHHHHHH----ccCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHH----
Q 038303 252 VINMYVKCGDVGIAIQVFNM----LAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS---- 323 (461)
Q Consensus 252 li~~~~~~g~~~~a~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~---- 323 (461)
=|++++..+++.++..+.-+ -.+-.......-|-.|.+.+++..+.++-..-....-.-+...|..++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 37788888888887665432 2233455566666778888888888887777665422223344666666554
Q ss_pred -cCCChHHHHHHH
Q 038303 324 -HGGLVDQGLILF 335 (461)
Q Consensus 324 -~~~~~~~a~~~~ 335 (461)
-.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 468888888776
No 362
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=75.77 E-value=11 Score=30.89 Aligned_cols=51 Identities=12% Similarity=-0.026 Sum_probs=25.1
Q ss_pred cCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 038303 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
...+.+......+.+.+.....|++.+|..++..+...|+.++|.++.+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333333332334455555555555555555555555555555
No 363
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=75.59 E-value=11 Score=26.17 Aligned_cols=50 Identities=14% Similarity=-0.066 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhhcCC--CChhHHHHHHHHHhccCCh
Q 038303 381 SVWGALLNACRIHRNDEMFDRIRQDLVNKKG--VSVGTFALMSNTFAGADRW 430 (461)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~ 430 (461)
..-..+...+...|++++|++.+-.+.+..+ .+...-..|+..+.-.|.-
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 3334444456666666666666666665432 2344555555555555553
No 364
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.42 E-value=1.1e+02 Score=31.78 Aligned_cols=28 Identities=18% Similarity=0.493 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 038303 176 SWTTMIGGYAERGFCKEAVSVFQEMEKT 203 (461)
Q Consensus 176 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 203 (461)
-|..|+..|...|+.++|++++.+..+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 4888999999999999999999998773
No 365
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.39 E-value=46 Score=27.62 Aligned_cols=60 Identities=17% Similarity=0.050 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHh
Q 038303 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340 (461)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 340 (461)
.+.-++.+.+.+...+++...++-++... .|..+-..+++.+|-.|++++|..-++-..+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 34455666777777777777776666432 2445555667777777777777766655543
No 366
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=75.07 E-value=13 Score=22.15 Aligned_cols=38 Identities=8% Similarity=-0.041 Sum_probs=31.4
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Q 038303 17 LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHF 54 (461)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 54 (461)
+...-+.|-..++..+++.|.+.|+..+...+..++..
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 33446788899999999999999999999888887753
No 367
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=74.71 E-value=63 Score=28.89 Aligned_cols=59 Identities=19% Similarity=0.015 Sum_probs=24.1
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhCCCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 038303 350 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVN 408 (461)
Q Consensus 350 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 408 (461)
....++....+.|..+.-..+++.....++...-..++.+.+...+.+...++++....
T Consensus 171 lr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 171 LRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp HHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 33334444444444443333333333233344444444554444455555555555444
No 368
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=74.58 E-value=37 Score=26.11 Aligned_cols=77 Identities=18% Similarity=0.293 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHcc---------CCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHhcCCCCCHhHHHHH
Q 038303 249 GNAVINMYVKCGDVGIAIQVFNMLA---------YKDKISWSTVISGLAMNGC-GRQALQLFSLMIINAVFPDDVTFIAL 318 (461)
Q Consensus 249 ~~~li~~~~~~g~~~~a~~~~~~~~---------~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~l 318 (461)
.+.++.-....+++.....+++.+. ..+..+|.+++.+..+..- ---+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3555555566666666666666553 1245567777777755444 33466677777776777777777777
Q ss_pred HHHHHcC
Q 038303 319 ISACSHG 325 (461)
Q Consensus 319 l~~~~~~ 325 (461)
+.++.+-
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7776654
No 369
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=73.87 E-value=9.7 Score=23.28 Aligned_cols=32 Identities=13% Similarity=-0.104 Sum_probs=22.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCChhHH
Q 038303 386 LLNACRIHRNDEMFDRIRQDLVNKKGVSVGTF 417 (461)
Q Consensus 386 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 417 (461)
+.-++.+.|+++.|.+..+.+.+..|.+..+-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 44457788888888888888888888776443
No 370
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=73.70 E-value=65 Score=28.56 Aligned_cols=94 Identities=15% Similarity=0.122 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHhHhh---cCCCCCcchHHHHHHHHh-----hcCCHHHHHHHHHhCCC---Cchhh
Q 038303 313 VTFIALISACSHGGLVDQGLILFKAMSTV---YEIVPQMQHYACVVDMYG-----RAGLLEEAEAFIREMPI---EAEWS 381 (461)
Q Consensus 313 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~---~p~~~ 381 (461)
.........||+.|+-+.|++.+++..++ .|.+.|+..+..-+..+. -....+.|..++++-+. +....
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 44555566678888888887777655431 355555554443222221 12345666666666632 12222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 038303 382 VWGALLNACRIHRNDEMFDRIRQDLVN 408 (461)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 408 (461)
+|..+- |...+++.+|-.+|-....
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 332211 4455677777777766655
No 371
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=73.60 E-value=19 Score=29.35 Aligned_cols=37 Identities=8% Similarity=-0.117 Sum_probs=22.7
Q ss_pred CCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 038303 375 PIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKG 411 (461)
Q Consensus 375 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 411 (461)
...|+...+..++.++...|+.++|.+...++....|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4456666666666666666666666666666665555
No 372
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=73.42 E-value=19 Score=25.21 Aligned_cols=22 Identities=9% Similarity=0.141 Sum_probs=11.6
Q ss_pred HHHHHHhccCChhhHHHHHHHH
Q 038303 419 LMSNTFAGADRWEDTNKIRDEI 440 (461)
Q Consensus 419 ~l~~~~~~~g~~~~A~~~~~~m 440 (461)
.++......|++++|...+++.
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEA 67 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHH
Confidence 3444445555555555555554
No 373
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=73.36 E-value=60 Score=28.06 Aligned_cols=49 Identities=8% Similarity=0.234 Sum_probs=29.7
Q ss_pred CChhHHHHHHHHHHHcCChhhHHHHHhcCCCCchhHHHHHHHHHHhcCC
Q 038303 141 NNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGF 189 (461)
Q Consensus 141 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 189 (461)
-++..+..+...|.+.|++.+|+..|-.-..++...+..++..+...|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~ 136 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGY 136 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcC
Confidence 3667788888889999999888887766655544444334443333333
No 374
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=73.23 E-value=43 Score=26.80 Aligned_cols=44 Identities=16% Similarity=0.102 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcCCc
Q 038303 396 DEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446 (461)
Q Consensus 396 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 446 (461)
++.|...|+++.+..|.+. .|..-+... ++|-++..++.+.+..
T Consensus 96 F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNE-LYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H-HHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCcH-HHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 4555556666666666654 555555444 2455666666555443
No 375
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=72.79 E-value=34 Score=28.52 Aligned_cols=35 Identities=6% Similarity=0.060 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHhccCChhhHHHHHHHHHHcCCccc
Q 038303 414 VGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448 (461)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 448 (461)
......++....+.|++++|.+.|.++...+-.+.
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 34556677777788888888888888876654433
No 376
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=72.51 E-value=38 Score=25.36 Aligned_cols=42 Identities=7% Similarity=-0.063 Sum_probs=32.9
Q ss_pred HHHHHHHHHhh--cCCCChhHHHHHHHHHhccCChhhHHHHHHH
Q 038303 398 MFDRIRQDLVN--KKGVSVGTFALMSNTFAGADRWEDTNKIRDE 439 (461)
Q Consensus 398 ~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 439 (461)
.+.++|+.|.. .....+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77888888876 3355677888888889999999999988864
No 377
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.37 E-value=55 Score=27.18 Aligned_cols=53 Identities=15% Similarity=0.046 Sum_probs=25.8
Q ss_pred HHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHh
Q 038303 319 ISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIRE 373 (461)
Q Consensus 319 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 373 (461)
++.+.+.+.+++++...+.-.+ .-+.+..+-..+++.||-.|+|++|..-++-
T Consensus 8 ~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 3444455555555555544443 2223344444455555555555555544443
No 378
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=72.27 E-value=34 Score=29.52 Aligned_cols=83 Identities=8% Similarity=0.014 Sum_probs=35.9
Q ss_pred HHHHHcCCChHHHHHHHHHhHh-hcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC---CCCchhhHHHHHHHHHH---
Q 038303 319 ISACSHGGLVDQGLILFKAMST-VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM---PIEAEWSVWGALLNACR--- 391 (461)
Q Consensus 319 l~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~--- 391 (461)
|+++...+++.+++...-.--+ -..++| .+...-|-.|.+.|.+..+.++-+.- +.+-+...|..+...|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 4555566666555543322211 011222 22333344455666655555544332 22222333544444432
Q ss_pred --hcCChHHHHHHH
Q 038303 392 --IHRNDEMFDRIR 403 (461)
Q Consensus 392 --~~~~~~~a~~~~ 403 (461)
=.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 235566665554
No 379
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=72.14 E-value=91 Score=29.55 Aligned_cols=80 Identities=9% Similarity=0.009 Sum_probs=40.5
Q ss_pred hhHHHHHhcCCCCchhHH-HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhc--cchhhhHHHHHHHH
Q 038303 160 ASCGYLFVKMPKRNVVSW-TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS--ISALSFGKYVHSYI 236 (461)
Q Consensus 160 ~~a~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~--~~~~~~a~~~~~~~ 236 (461)
+.....+..+..++..++ +.++.-+.+.|-..+|...|..+... .+|+...|..++..-.. .-+..-+..+++.+
T Consensus 445 ~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l--pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a 522 (568)
T KOG2396|consen 445 DLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL--PPFSLDLFRKMIQFEKEQESCNLANIREYYDRA 522 (568)
T ss_pred HHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC--CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHH
Confidence 334444445555555443 34555556666666777777766664 44455555555443111 11144455555555
Q ss_pred HhhcC
Q 038303 237 STRYD 241 (461)
Q Consensus 237 ~~~~~ 241 (461)
....|
T Consensus 523 ~~~fg 527 (568)
T KOG2396|consen 523 LREFG 527 (568)
T ss_pred HHHhC
Confidence 55444
No 380
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.05 E-value=6.2 Score=26.34 Aligned_cols=46 Identities=2% Similarity=-0.013 Sum_probs=30.0
Q ss_pred hcCChHHHHHHHHHHhhcCCCC---hhHHHHHHHHHhccCChhhHHHHH
Q 038303 392 IHRNDEMFDRIRQDLVNKKGVS---VGTFALMSNTFAGADRWEDTNKIR 437 (461)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~ 437 (461)
...+.+.|+..|+.+.+..+.. ..++..++.+|+..|++.++++.-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777644333 335566677777778777766543
No 381
>PRK10941 hypothetical protein; Provisional
Probab=71.98 E-value=28 Score=30.20 Aligned_cols=59 Identities=12% Similarity=-0.111 Sum_probs=38.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 038303 385 ALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 385 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 443 (461)
.+-.+|.+.++++.|..+.+.+....|.++.-+..-+-.|.+.|.+..|..=++...+.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34444666667777777777666666666666666666666667666666666665544
No 382
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=71.54 E-value=44 Score=25.69 Aligned_cols=50 Identities=10% Similarity=0.014 Sum_probs=32.1
Q ss_pred CchhHHHHHHHhcccch-hHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHc
Q 038303 107 NANTLVSVLSACSSLVS-HKLGKAIHAHSLRNLNENNIILDNAILDFYIRC 156 (461)
Q Consensus 107 ~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (461)
+..+|..++.+.+.... --.+..+|..+.+.+.+++..-|..++.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 44566666666655555 444566667776666777777777777766544
No 383
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=70.53 E-value=45 Score=29.49 Aligned_cols=54 Identities=4% Similarity=0.158 Sum_probs=26.6
Q ss_pred HHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 038303 321 ACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
+..+.|+..+|.+.++.+.++..+..-..+...|++++....-+.++..++.+.
T Consensus 284 CARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334466666666666666552221111223334556665555555555554443
No 384
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.14 E-value=1.4e+02 Score=30.93 Aligned_cols=163 Identities=12% Similarity=-0.001 Sum_probs=81.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCC-CHhHHHHHHHHHHcCCCh--HHHHHHHHHhHhhcCCCCCcchHH-
Q 038303 279 SWSTVISGLAMNGCGRQALQLFSLMIINA--VFP-DDVTFIALISACSHGGLV--DQGLILFKAMSTVYEIVPQMQHYA- 352 (461)
Q Consensus 279 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g--~~p-~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~- 352 (461)
-|..|+..|...|+.++|+++|.+..+.. ..+ -...+..+++.+.+.+.. +-.+++-+....+ .-.-....+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~-~p~~gi~Ift~ 584 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNK-NPEAGIQIFTS 584 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhcc-Cchhheeeeec
Confidence 47777777888888888888887776531 000 012233344444443333 4444443333321 1000011111
Q ss_pred -----------HHHHHHhhcCCHHHHHHHHHhC---CCCchhhHHHHHHHHHHhc--------CChHHHHHH-----HHH
Q 038303 353 -----------CVVDMYGRAGLLEEAEAFIREM---PIEAEWSVWGALLNACRIH--------RNDEMFDRI-----RQD 405 (461)
Q Consensus 353 -----------~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~--------~~~~~a~~~-----~~~ 405 (461)
..+-.|......+-+..+++.+ ...++....+.++..|... ++.+++.+. +..
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~ 664 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLD 664 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHH
Confidence 1223455667777788888877 2234445555555554322 122233333 111
Q ss_pred Hhh---c--------CCCChhHHHHHHHHHhccCChhhHHHHHHHHHH
Q 038303 406 LVN---K--------KGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442 (461)
Q Consensus 406 ~~~---~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 442 (461)
..+ . .-+....|....-.+.|.|+.++|+.++-....
T Consensus 665 ~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 665 FLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 111 0 011244666666677789999999888765543
No 385
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=69.54 E-value=40 Score=24.41 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038303 279 SWSTVISGLAMNGCGRQALQLFSLMII 305 (461)
Q Consensus 279 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 305 (461)
-|..++..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 455666666666666666666666554
No 386
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=69.40 E-value=21 Score=21.20 Aligned_cols=33 Identities=6% Similarity=-0.034 Sum_probs=22.4
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 038303 288 AMNGCGRQALQLFSLMIINAVFPDDVTFIALIS 320 (461)
Q Consensus 288 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 320 (461)
.+.|-.+++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666677777777777777777766666554
No 387
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=69.11 E-value=1e+02 Score=28.80 Aligned_cols=70 Identities=13% Similarity=0.212 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHccCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHH
Q 038303 250 NAVINMYVKCGDVGIAIQVFNMLAYK---DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323 (461)
Q Consensus 250 ~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 323 (461)
..|+.-|...|++.+|...+.++.-| ....+.+++.+.-+.|+-...+.++++.-..|. .|.+.+-++|.
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~ 585 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFE 585 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhh
Confidence 45777888889999999988888766 456788888888888887777777777755543 44455555553
No 388
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=68.66 E-value=25 Score=28.11 Aligned_cols=48 Identities=6% Similarity=-0.042 Sum_probs=33.9
Q ss_pred ChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCC-----------hhhHHHHHHHHHH
Q 038303 395 NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADR-----------WEDTNKIRDEIRR 442 (461)
Q Consensus 395 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~ 442 (461)
.+++|+.-|++++..+|....++..++.+|...+. +++|...|++..+
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~ 108 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD 108 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh
Confidence 46677778888888899999999999999886554 4555556655544
No 389
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=67.75 E-value=37 Score=25.25 Aligned_cols=48 Identities=21% Similarity=0.198 Sum_probs=34.8
Q ss_pred CCCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHH
Q 038303 374 MPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421 (461)
Q Consensus 374 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 421 (461)
+..-|++......+++|.+.+|+..|.++|+-.+...++.-..|-.++
T Consensus 78 yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 78 YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 356678888888888888888888888888887765555444555544
No 390
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=67.71 E-value=86 Score=27.55 Aligned_cols=20 Identities=5% Similarity=0.360 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHhcCChHHH
Q 038303 174 VVSWTTMIGGYAERGFCKEA 193 (461)
Q Consensus 174 ~~~~~~li~~~~~~~~~~~a 193 (461)
.-+|..|+.+++..|+.+-.
T Consensus 321 lK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHhhhHHHHHHhcCChHHHH
Confidence 34677777777777776644
No 391
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=67.53 E-value=85 Score=27.41 Aligned_cols=113 Identities=9% Similarity=0.061 Sum_probs=65.5
Q ss_pred HHHHHHHHHHccC-----CChhhHHHHHHHHHhc-C-ChHHHHHHHHHHH-hcCCCCCHhHHHHHHHHHHcCCChHHHHH
Q 038303 262 VGIAIQVFNMLAY-----KDKISWSTVISGLAMN-G-CGRQALQLFSLMI-INAVFPDDVTFIALISACSHGGLVDQGLI 333 (461)
Q Consensus 262 ~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 333 (461)
+.+|+.+|+.... .|......+++..... + ....-.++.+-+. ..|-.++..+...++..++..+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4455555552221 2444555555554441 1 1122222223232 22355666777777777777777777777
Q ss_pred HHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 038303 334 LFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
+++......+...|...|..+|+.....|+..-..++..+-
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 77766653345566777777777777777777777776654
No 392
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=67.15 E-value=1.1e+02 Score=28.39 Aligned_cols=52 Identities=6% Similarity=-0.065 Sum_probs=26.8
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHh--HHHHHHHHHHc--CCChHHHHHHHHHhHh
Q 038303 288 AMNGCGRQALQLFSLMIINAVFPDDV--TFIALISACSH--GGLVDQGLILFKAMST 340 (461)
Q Consensus 288 ~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~--~~~~~~a~~~~~~~~~ 340 (461)
...+++..|.++++.+.+. ++++.. .+..+..+|.. .-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3556666666666666654 333332 33444444433 4455566666655544
No 393
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=66.00 E-value=47 Score=23.89 Aligned_cols=81 Identities=10% Similarity=0.053 Sum_probs=53.6
Q ss_pred cchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHHH
Q 038303 121 LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEM 200 (461)
Q Consensus 121 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 200 (461)
....++|..+.+.+...+.. ...+--.-+..+...|++++|...=.....||...|-+|- -.+.|-.+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHH
Confidence 34577888888888777652 3333344455678899999995555555568888887764 45788888888888888
Q ss_pred HhcC
Q 038303 201 EKTK 204 (461)
Q Consensus 201 ~~~~ 204 (461)
...|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
Confidence 7664
No 394
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=65.59 E-value=48 Score=24.03 Aligned_cols=27 Identities=11% Similarity=0.502 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038303 176 SWTTMIGGYAERGFCKEAVSVFQEMEK 202 (461)
Q Consensus 176 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 202 (461)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588899999999999999999999877
No 395
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=65.04 E-value=47 Score=23.57 Aligned_cols=60 Identities=23% Similarity=0.277 Sum_probs=39.2
Q ss_pred HHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHH
Q 038303 253 INMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTF 315 (461)
Q Consensus 253 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 315 (461)
+..+...|++++|..+.+...-||...|-++-. .+.|-.+++..-+.+|...| .|...+|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 345567788888888887777777777776654 35566666666666666654 3344444
No 396
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=64.96 E-value=1.7e+02 Score=30.02 Aligned_cols=83 Identities=8% Similarity=0.013 Sum_probs=41.5
Q ss_pred HHHHHHHcCCChHHHHHHHhcC-------CCCCCchhHHHHHHHhccc----chhHHHHHHHHHH----HhhcCCCChhH
Q 038303 81 TIISGLSKCGFHKEAIDMFCGI-------DVKPNANTLVSVLSACSSL----VSHKLGKAIHAHS----LRNLNENNIIL 145 (461)
Q Consensus 81 ~li~~~~~~~~~~~a~~~~~~m-------~~~p~~~~~~~ll~~~~~~----~~~~~a~~~~~~~----~~~~~~~~~~~ 145 (461)
.|.+.+...++-...++-++.+ .-.+..+-|..+..-+.+. +......+++... .+.|.+
T Consensus 289 eL~~~Ltg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~~----- 363 (894)
T COG2909 289 ELCNALTGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHGLP----- 363 (894)
T ss_pred HHHHHHhcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCCCh-----
Confidence 3455555556655556655555 3334455566665544322 1223333443333 233333
Q ss_pred HHHHHHHHHHcCChhhHHHHHhcC
Q 038303 146 DNAILDFYIRCGSLASCGYLFVKM 169 (461)
Q Consensus 146 ~~~l~~~~~~~g~~~~a~~~~~~~ 169 (461)
.--|+-..+.|+++.|-.++++-
T Consensus 364 -~eAI~hAlaA~d~~~aa~lle~~ 386 (894)
T COG2909 364 -SEAIDHALAAGDPEMAADLLEQL 386 (894)
T ss_pred -HHHHHHHHhCCCHHHHHHHHHhh
Confidence 22344455667777777766655
No 397
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=64.77 E-value=49 Score=26.56 Aligned_cols=19 Identities=5% Similarity=0.169 Sum_probs=10.7
Q ss_pred HHHHhcCCHHHHHHHHhhC
Q 038303 53 HFYVTVKDIFSAHQIFNSV 71 (461)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~ 71 (461)
..|.+.|.+++|.+++++.
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~ 137 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRL 137 (200)
T ss_pred HHHHhcCchHHHHHHHHHH
Confidence 3455556666666665555
No 398
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=64.50 E-value=45 Score=23.30 Aligned_cols=19 Identities=11% Similarity=-0.020 Sum_probs=13.1
Q ss_pred HHhcCChHHHHHHHHHHhh
Q 038303 390 CRIHRNDEMFDRIRQDLVN 408 (461)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~ 408 (461)
....|+.++|...+++.++
T Consensus 51 ~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 5566777777777777665
No 399
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=64.45 E-value=49 Score=23.51 Aligned_cols=86 Identities=14% Similarity=0.110 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038303 123 SHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202 (461)
Q Consensus 123 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 202 (461)
..++|..+-+.+...+.. ...+--.-+..+...|++++|..+.+....||...|-+|- -.+.|-.+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALC--EWRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHH--HHhhccHHHHHHHHHHHHh
Confidence 456666666666555432 2223233445677889999999999999889999998774 3467777878888888877
Q ss_pred cCCCCCChhhH
Q 038303 203 TKEAEPNEATL 213 (461)
Q Consensus 203 ~~~~~~~~~~~ 213 (461)
.| .|...+|
T Consensus 97 sg--~p~lq~F 105 (115)
T TIGR02508 97 SG--DPRLQTF 105 (115)
T ss_pred CC--CHHHHHH
Confidence 64 3444444
No 400
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=63.51 E-value=16 Score=31.83 Aligned_cols=40 Identities=20% Similarity=0.142 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHH
Q 038303 279 SWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIAL 318 (461)
Q Consensus 279 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 318 (461)
-|+..|....+.||+++|+.++++.++.|+.--..+|-..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 4678888888999999999999999988877555555443
No 401
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=63.25 E-value=13 Score=23.57 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=10.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 038303 282 TVISGLAMNGCGRQALQLFSLMI 304 (461)
Q Consensus 282 ~l~~~~~~~~~~~~a~~~~~~m~ 304 (461)
.+|.++...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444555555555555444443
No 402
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=62.73 E-value=47 Score=31.98 Aligned_cols=82 Identities=10% Similarity=-0.068 Sum_probs=40.2
Q ss_pred cCCHHHHHHHHHhC-CCCch--hhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHH
Q 038303 361 AGLLEEAEAFIREM-PIEAE--WSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIR 437 (461)
Q Consensus 361 ~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 437 (461)
.|+...|...+... ...|- .+....|.....+.|....|-.++.+........+-++..++++|.-..+++.|++.|
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 45555555555544 22221 1122233333444445555555555555544444555555555555555666666555
Q ss_pred HHHHH
Q 038303 438 DEIRR 442 (461)
Q Consensus 438 ~~m~~ 442 (461)
++..+
T Consensus 700 ~~a~~ 704 (886)
T KOG4507|consen 700 RQALK 704 (886)
T ss_pred HHHHh
Confidence 55544
No 403
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=61.22 E-value=7.7 Score=33.68 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=23.4
Q ss_pred ChhHHHHHHHHHhccCChhhHHHHHHHHHHcCCcccc
Q 038303 413 SVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKT 449 (461)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 449 (461)
....|+..++.-.+.|++++|++++++..+.|+..-.
T Consensus 256 Te~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar 292 (303)
T PRK10564 256 TESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSAR 292 (303)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHH
Confidence 3444556666666777777777777777666665433
No 404
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.06 E-value=1.5e+02 Score=28.09 Aligned_cols=104 Identities=13% Similarity=0.057 Sum_probs=67.4
Q ss_pred HHHhcCCHHHHHHHHHHcc---CC---------ChhhHHHHHHHHHhcCChHHHHHHHHHHH-------hcCCCCCH---
Q 038303 255 MYVKCGDVGIAIQVFNMLA---YK---------DKISWSTVISGLAMNGCGRQALQLFSLMI-------INAVFPDD--- 312 (461)
Q Consensus 255 ~~~~~g~~~~a~~~~~~~~---~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~-------~~g~~p~~--- 312 (461)
.+.-.|++.+|.+++...- .+ ....||.|...+.+.|.+..+..+|.+.. ..|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 3456788888888876543 11 12335666666666677666666666554 34655533
Q ss_pred --------hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhc
Q 038303 313 --------VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA 361 (461)
Q Consensus 313 --------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 361 (461)
.+|+.=+ .|...|++-.|.+.|.+... -+..++..|-.|.++|...
T Consensus 329 ls~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~--vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVH--VFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHH
Confidence 1233322 46778999999999988877 5667788888888888643
No 405
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=60.87 E-value=1.2e+02 Score=26.64 Aligned_cols=113 Identities=12% Similarity=0.159 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhcc--chhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHH
Q 038303 190 CKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI--SALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267 (461)
Q Consensus 190 ~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 267 (461)
..+|+.+|+.....+.+--|......+++..... .....--++.+.+....+..++..+...++..+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4555666653222122455555555555554431 12333334445555545677777777888888888888888888
Q ss_pred HHHHccC-----CChhhHHHHHHHHHhcCChHHHHHHHHH
Q 038303 268 VFNMLAY-----KDKISWSTVISGLAMNGCGRQALQLFSL 302 (461)
Q Consensus 268 ~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 302 (461)
+++.... .|...|..+|......|+..-...+.++
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 8877653 3778888888888888887655555543
No 406
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=59.80 E-value=8.1 Score=35.74 Aligned_cols=96 Identities=7% Similarity=-0.086 Sum_probs=64.0
Q ss_pred HHHHHcCCChHHHHHHHHHhHhhcCCCCCcchH-HHHHHHHhhcCCHHHHHHHHHhC-CCCchhh-HHHHHHHHHHhcCC
Q 038303 319 ISACSHGGLVDQGLILFKAMSTVYEIVPQMQHY-ACVVDMYGRAGLLEEAEAFIREM-PIEAEWS-VWGALLNACRIHRN 395 (461)
Q Consensus 319 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~ 395 (461)
...+...+.++.|..++.++.+ +.||-..| ..=..++.+.+++..|+.=+..+ ...|+.. .|..=..+|...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 4556677888999999888876 45654433 33347788888888888766665 4444432 23223344667777
Q ss_pred hHHHHHHHHHHhhcCCCChhHH
Q 038303 396 DEMFDRIRQDLVNKKGVSVGTF 417 (461)
Q Consensus 396 ~~~a~~~~~~~~~~~~~~~~~~ 417 (461)
+.+|...|+......|.++..-
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~ 109 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDAT 109 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHH
Confidence 8888888888887777776443
No 407
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=59.17 E-value=2.4e+02 Score=29.78 Aligned_cols=128 Identities=5% Similarity=-0.035 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHhHhh---cCCCCCcc--------hHHHHHHHHhhcCCHHHHHHHHHhCCCCchhh
Q 038303 313 VTFIALISACSHGGLVDQGLILFKAMSTV---YEIVPQMQ--------HYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 381 (461)
Q Consensus 313 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~ 381 (461)
.+...++-+.+..|+++-+.+..+.+.+. ...+-+.. .|-.=+.++.....++++.+.+...+...-..
T Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (932)
T PRK13184 689 RALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTDPTLILY 768 (932)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCCHHHHHH
Confidence 33444444557788888887777766541 11111111 12222445555566677766555553211222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC---hhHHHHHHHHHhccCChhhHHHHHHHH
Q 038303 382 VWGALLNACRIHRNDEMFDRIRQDLVNKKGVS---VGTFALMSNTFAGADRWEDTNKIRDEI 440 (461)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m 440 (461)
.+..++.-+...++.+....+.+.+.+-..+. .......+++|.-..++++|.+++...
T Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (932)
T PRK13184 769 AFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRY 830 (932)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhC
Confidence 34444444566667776666666665533222 334556677888888999998888654
No 408
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=59.13 E-value=1.4e+02 Score=27.70 Aligned_cols=23 Identities=13% Similarity=0.078 Sum_probs=14.3
Q ss_pred HHHHHHHHcCCChHHHHHHHhcC
Q 038303 80 TTIISGLSKCGFHKEAIDMFCGI 102 (461)
Q Consensus 80 ~~li~~~~~~~~~~~a~~~~~~m 102 (461)
-.|++.++-.|++..|+++++.+
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~i 148 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENI 148 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhcc
Confidence 34456666666666666666655
No 409
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.83 E-value=7.3 Score=34.35 Aligned_cols=118 Identities=15% Similarity=0.028 Sum_probs=68.7
Q ss_pred HHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCchhh-HHHHHHHHHHhcCChHHH
Q 038303 322 CSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS-VWGALLNACRIHRNDEMF 399 (461)
Q Consensus 322 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a 399 (461)
....|.++.|++.|-...+ --++....|..-...+.+.+++..|++-+... .+.||.. .|-.=-.+-...|++++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 4456778888888877665 33455555656666777778888877777666 5555543 222223334566777887
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHH
Q 038303 400 DRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442 (461)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 442 (461)
...+....+..-. ..+=..+-...-+++..++-...+++..+
T Consensus 202 a~dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 202 AHDLALACKLDYD-EANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHhcccc-HHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 7777777764421 22222333344455555555555554433
No 410
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=58.77 E-value=24 Score=22.43 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=17.0
Q ss_pred CHhHHHHHHHHHHcCCChHHHHHHHHHhHh
Q 038303 311 DDVTFIALISACSHGGLVDQGLILFKAMST 340 (461)
Q Consensus 311 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 340 (461)
|..-.-.+|.++...|++++|.++++.+..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444556666666666666666666544
No 411
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.62 E-value=1.1e+02 Score=25.80 Aligned_cols=12 Identities=17% Similarity=0.221 Sum_probs=5.8
Q ss_pred CChHHHHHHHhc
Q 038303 90 GFHKEAIDMFCG 101 (461)
Q Consensus 90 ~~~~~a~~~~~~ 101 (461)
+++++|.++|.+
T Consensus 28 ~k~eeAadl~~~ 39 (288)
T KOG1586|consen 28 NKYEEAAELYER 39 (288)
T ss_pred cchHHHHHHHHH
Confidence 345555555543
No 412
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=58.31 E-value=1.4e+02 Score=26.77 Aligned_cols=51 Identities=12% Similarity=0.027 Sum_probs=25.1
Q ss_pred HhhcCCHHHHHHHHHhC------CCCchhhHHHHHHH--HHHhcCChHHHHHHHHHHhh
Q 038303 358 YGRAGLLEEAEAFIREM------PIEAEWSVWGALLN--ACRIHRNDEMFDRIRQDLVN 408 (461)
Q Consensus 358 ~~~~g~~~~A~~~~~~~------~~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~ 408 (461)
.-+.++.++|+++++++ ...|+...|..... .+...||..++++.++...+
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33445566666666555 22344444433222 24455556666555555554
No 413
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=58.27 E-value=80 Score=25.41 Aligned_cols=21 Identities=14% Similarity=0.333 Sum_probs=14.6
Q ss_pred HHHHcCCChHHHHHHHHHhHh
Q 038303 320 SACSHGGLVDQGLILFKAMST 340 (461)
Q Consensus 320 ~~~~~~~~~~~a~~~~~~~~~ 340 (461)
-.|.+.|.+++|.+++++...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 347777777777777777655
No 414
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=58.19 E-value=48 Score=31.96 Aligned_cols=101 Identities=9% Similarity=-0.060 Sum_probs=72.6
Q ss_pred cCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-C-CCchhhHHHHHHHHHHhcCChHHHHH
Q 038303 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-P-IEAEWSVWGALLNACRIHRNDEMFDR 401 (461)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~ 401 (461)
-.|+...|.+.+...........+ ...-.|.+...+.|-...|-.++.+. . ....+.++..+.+++....+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~-v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQD-VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhc-ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 368888888888766542222222 23344667777778888888877665 2 23445567777888889999999999
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHh
Q 038303 402 IRQDLVNKKGVSVGTFALMSNTFA 425 (461)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~ 425 (461)
.|+.+....|.++..-+.|...-|
T Consensus 698 ~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 698 AFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999888887776655
No 415
>PRK09169 hypothetical protein; Validated
Probab=58.02 E-value=3.6e+02 Score=31.47 Aligned_cols=366 Identities=11% Similarity=0.021 Sum_probs=195.8
Q ss_pred CceeHHHHHHHHHcCCChHHHHHHHhcC----------CCCCCchhHHHHHHHhcccchhHHHHHHHHH----HHh---h
Q 038303 75 DVVSWTTIISGLSKCGFHKEAIDMFCGI----------DVKPNANTLVSVLSACSSLVSHKLGKAIHAH----SLR---N 137 (461)
Q Consensus 75 ~~~~~~~li~~~~~~~~~~~a~~~~~~m----------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~---~ 137 (461)
+......++++++|..+-+.+...-+.+ ....|.......++++++-.+-+.+...... +.. .
T Consensus 245 ~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l 324 (2316)
T PRK09169 245 RAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERGL 324 (2316)
T ss_pred CHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhh
Confidence 3455667788888877665544333322 2234566677788888877654433322222 211 1
Q ss_pred cCCCChhHHHHHHHHHHHcCChhhHH----HHHhcCC-------CCchhHHHHHHHHHHhcCChHH----HHHHHHHHHh
Q 038303 138 LNENNIILDNAILDFYIRCGSLASCG----YLFVKMP-------KRNVVSWTTMIGGYAERGFCKE----AVSVFQEMEK 202 (461)
Q Consensus 138 ~~~~~~~~~~~l~~~~~~~g~~~~a~----~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~ 202 (461)
....+..-....+++++|..+-+.+. .+-+++. .-+..-....++++.|-++-+. |..+...+..
T Consensus 325 ~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~ 404 (2316)
T PRK09169 325 LQAMNAQAVANALNALSKWPDEEACRAAAEALAARLARDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLAR 404 (2316)
T ss_pred hhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHh
Confidence 12234444556777888877665432 2222222 1345556667777887765432 3333333333
Q ss_pred cCC--CCCChhhHHHHHHHhhccchhhhHHHHHHHH----Hhhc--CCCCcchHHHHHHHHHHhcCCHHHH----HHHHH
Q 038303 203 TKE--AEPNEATLVNVLSACSSISALSFGKYVHSYI----STRY--DLSVSNLVGNAVINMYVKCGDVGIA----IQVFN 270 (461)
Q Consensus 203 ~~~--~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~----~~~~--~~~~~~~~~~~li~~~~~~g~~~~a----~~~~~ 270 (461)
..+ ..-|..-....+.++++-+.-+........+ .... .-..+..-..+.+.+++|-++-+.+ ..+..
T Consensus 405 ~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~ 484 (2316)
T PRK09169 405 DAGLRAALNAQGVANALNALSKWPGAEACRQAALALAARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAA 484 (2316)
T ss_pred chhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 210 2356667778888888876655333332222 2111 1233455667778888877664422 23333
Q ss_pred HccC-------CChhhHHHHHHHHHhcCChHHHHHH----HHHHHhc---CCCCCHhHHHHHHHHHHcCCChHH----HH
Q 038303 271 MLAY-------KDKISWSTVISGLAMNGCGRQALQL----FSLMIIN---AVFPDDVTFIALISACSHGGLVDQ----GL 332 (461)
Q Consensus 271 ~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~----a~ 332 (461)
.+.. -+..-....+.++++-++.+..... ...+... --.-+..-+...+.++++-.+.+. |.
T Consensus 485 rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~ 564 (2316)
T PRK09169 485 RLAGDAELRQALDAQGLANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAE 564 (2316)
T ss_pred HHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHH
Confidence 3321 2555677788888888776654332 2222221 122355667788888888766433 23
Q ss_pred HHHHHhHhhcC--CCCCcchHHHHHHHHhhcCCHHH----HHHHHHhC----C--CCchhhHHHHHHHHHHhcCChHHHH
Q 038303 333 ILFKAMSTVYE--IVPQMQHYACVVDMYGRAGLLEE----AEAFIREM----P--IEAEWSVWGALLNACRIHRNDEMFD 400 (461)
Q Consensus 333 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~----~--~~p~~~~~~~l~~~~~~~~~~~~a~ 400 (461)
.+...+..+.+ -..+.......+.++.|-+.-.. +..+.... + ..-+..-+...+.++++..+.+...
T Consensus 565 aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr 644 (2316)
T PRK09169 565 ALAARLARRPDLRSALNAQGLANLLNALSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCR 644 (2316)
T ss_pred HHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHH
Confidence 34443333111 12344556667778887665332 22233333 1 1224456677888888887777655
Q ss_pred HHHHHHhh--------cCCCChhHHHHHHHHHhccCChhhHHHHHHHH
Q 038303 401 RIRQDLVN--------KKGVSVGTFALMSNTFAGADRWEDTNKIRDEI 440 (461)
Q Consensus 401 ~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 440 (461)
.....+.. ...-++.-+.++++++++-.+.+.+.+....+
T Consensus 645 ~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~~~c~~Aa~aL 692 (2316)
T PRK09169 645 QAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPDEAACRAAALAL 692 (2316)
T ss_pred HHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44444433 12235666778888888887766544444444
No 416
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=56.93 E-value=1.3e+02 Score=26.03 Aligned_cols=159 Identities=14% Similarity=0.008 Sum_probs=75.1
Q ss_pred hcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHH----HHHhcCCCCCHhHHHHHHHHHHcCCChH-HHH
Q 038303 258 KCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS----LMIINAVFPDDVTFIALISACSHGGLVD-QGL 332 (461)
Q Consensus 258 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~m~~~g~~p~~~~~~~ll~~~~~~~~~~-~a~ 332 (461)
+.+++++|.+++..- ...+.+.|+...|.++.. -..+.+..++......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 345566666554321 223445555544444333 3333456666655555555554432211 122
Q ss_pred HHHHHhHhh--cC--CCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 038303 333 ILFKAMSTV--YE--IVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVN 408 (461)
Q Consensus 333 ~~~~~~~~~--~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 408 (461)
.+.+.+.+- .+ -.-++.....+...|.+.|++.+|+..|-... .|+...+..++..+...|
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~-------------- 135 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKG-------------- 135 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHT--------------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhc--------------
Confidence 222322221 12 22356777888889999999999888776552 233333222333322223
Q ss_pred cCCCChhHH-HHHHHHHhccCChhhHHHHHHHHHHc
Q 038303 409 KKGVSVGTF-ALMSNTFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 409 ~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~ 443 (461)
.+.....| ...+--|.-.|+...|...++...+.
T Consensus 136 -~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 136 -YPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp -SS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred -CCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 23333332 33344566678888888888777655
No 417
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.71 E-value=1.8e+02 Score=27.60 Aligned_cols=149 Identities=11% Similarity=0.058 Sum_probs=90.9
Q ss_pred HhcCChHHHHHHHHHHHhcC-CCCC--H-----hHHHHHHHH-HHcCCChHHHHHHHHHhHhhcCCCCCcch--HHHHHH
Q 038303 288 AMNGCGRQALQLFSLMIINA-VFPD--D-----VTFIALISA-CSHGGLVDQGLILFKAMSTVYEIVPQMQH--YACVVD 356 (461)
Q Consensus 288 ~~~~~~~~a~~~~~~m~~~g-~~p~--~-----~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~ 356 (461)
.-.|++.+|++-+..|.+-- -.|. . .....++.- |+..+.++.|+.-|....+ .-..-|... -..+..
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k-~t~~~dl~a~~nlnlAi 412 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATK-LTESIDLQAFCNLNLAI 412 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHH-hhhHHHHHHHHHHhHHH
Confidence 44699999999999987632 1233 1 112333333 4568899999988877766 222233222 234566
Q ss_pred HHhhcCCHHHHHHHHHhCCCCchhhHHHH--------HHHH--HHhcCChHHHHHHHHHHhhcC------CCChhHHHHH
Q 038303 357 MYGRAGLLEEAEAFIREMPIEAEWSVWGA--------LLNA--CRIHRNDEMFDRIRQDLVNKK------GVSVGTFALM 420 (461)
Q Consensus 357 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~--------l~~~--~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l 420 (461)
.|.+.|+.+.--++++.++- |+..++.. ++.+ ....+++.+|+..+.+..+.. .-..-....+
T Consensus 413 ~YL~~~~~ed~y~~ld~i~p-~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLL 491 (629)
T KOG2300|consen 413 SYLRIGDAEDLYKALDLIGP-LNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLL 491 (629)
T ss_pred HHHHhccHHHHHHHHHhcCC-CCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Confidence 78899998888888888831 21221111 1222 257899999999999887633 1122234455
Q ss_pred HHHHhccCChhhHHHHHH
Q 038303 421 SNTFAGADRWEDTNKIRD 438 (461)
Q Consensus 421 ~~~~~~~g~~~~A~~~~~ 438 (461)
...+...|+..++.+...
T Consensus 492 s~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 492 SHVFLSLGNTVESRNMVR 509 (629)
T ss_pred HHHHHHhcchHHHHhccc
Confidence 566667788777765543
No 418
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.67 E-value=1.5e+02 Score=28.78 Aligned_cols=85 Identities=11% Similarity=0.118 Sum_probs=59.5
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH-hcCCHHHHHHHHhhCC-------CCCceeHHH-HHHHHH
Q 038303 17 LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYV-TVKDIFSAHQIFNSVV-------FPDVVSWTT-IISGLS 87 (461)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~-------~~~~~~~~~-li~~~~ 87 (461)
+..+.+.|.+..|++..+.+.+....-|+.....+|+.|+ +..+++-.+++++... -||. .|+. +...|.
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~-~yS~AlA~f~l 427 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNF-GYSLALARFFL 427 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCc-hHHHHHHHHHH
Confidence 5667789999999999999999887778888889999887 6778888888887651 2443 4444 444554
Q ss_pred cCCC---hHHHHHHHhcC
Q 038303 88 KCGF---HKEAIDMFCGI 102 (461)
Q Consensus 88 ~~~~---~~~a~~~~~~m 102 (461)
.... -..|+..+.+.
T Consensus 428 ~~~~~~~rqsa~~~l~qA 445 (665)
T KOG2422|consen 428 RKNEEDDRQSALNALLQA 445 (665)
T ss_pred hcCChhhHHHHHHHHHHH
Confidence 4443 33455444443
No 419
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=56.66 E-value=93 Score=27.78 Aligned_cols=90 Identities=10% Similarity=-0.023 Sum_probs=65.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC--CC--Cc--hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038303 351 YACVVDMYGRAGLLEEAEAFIREM--PI--EA--EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424 (461)
Q Consensus 351 ~~~l~~~~~~~g~~~~A~~~~~~~--~~--~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (461)
|.-=.+-|.+..++..|...|.+. .. .| +.+.|+.=..+-...|++..++.-..+++...|.....|..=+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 333456677888888888888876 11 22 2334544444555678888898888888888898888888888888
Q ss_pred hccCChhhHHHHHHHH
Q 038303 425 AGADRWEDTNKIRDEI 440 (461)
Q Consensus 425 ~~~g~~~~A~~~~~~m 440 (461)
....++++|....++.
T Consensus 164 ~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 8888887777766554
No 420
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=56.54 E-value=12 Score=23.88 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=20.2
Q ss_pred cCChHHHHHHHHHHHhcCCCCCChh
Q 038303 187 RGFCKEAVSVFQEMEKTKEAEPNEA 211 (461)
Q Consensus 187 ~~~~~~a~~~~~~m~~~~~~~~~~~ 211 (461)
.-|++.|...|.++...|.++|+..
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhhc
Confidence 4578999999999998876777654
No 421
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=56.40 E-value=58 Score=31.94 Aligned_cols=70 Identities=16% Similarity=0.132 Sum_probs=39.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC---C---CceeHHHHHHHHHcCCChH------HHHHHHhcCCCCCCchhHHHHHHH
Q 038303 50 SLLHFYVTVKDIFSAHQIFNSVVF---P---DVVSWTTIISGLSKCGFHK------EAIDMFCGIDVKPNANTLVSVLSA 117 (461)
Q Consensus 50 ~ll~~~~~~~~~~~a~~~~~~~~~---~---~~~~~~~li~~~~~~~~~~------~a~~~~~~m~~~p~~~~~~~ll~~ 117 (461)
+|+.+|...|++-.+.++++.... . -...||..|+.+.+.|.++ .|.+.+++..+.-|..||..++.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 566666666777766666666522 1 1234666666666666542 344444444555566666666555
Q ss_pred hc
Q 038303 118 CS 119 (461)
Q Consensus 118 ~~ 119 (461)
..
T Consensus 113 sl 114 (1117)
T COG5108 113 SL 114 (1117)
T ss_pred hc
Confidence 43
No 422
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=55.42 E-value=2.2e+02 Score=28.16 Aligned_cols=156 Identities=11% Similarity=0.074 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 038303 278 ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM 357 (461)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 357 (461)
..|..-+.-+...++.. ...++++..+-...+...-..++..|.+.|-.+.|..+.+.+-. -
T Consensus 373 ~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~----------------~ 434 (566)
T PF07575_consen 373 SLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQ----------------R 434 (566)
T ss_dssp TTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHH----------------H
T ss_pred chHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------------H
Confidence 34444444444333222 44455555443334555566667777777777777766665544 2
Q ss_pred HhhcCCHHHHHHHHHhCCCCchhh-HHHHHHHHHHhcCChHHHHHHHHHHhhc--CCCChhHHHHHHHHH--hccCChhh
Q 038303 358 YGRAGLLEEAEAFIREMPIEAEWS-VWGALLNACRIHRNDEMFDRIRQDLVNK--KGVSVGTFALMSNTF--AGADRWED 432 (461)
Q Consensus 358 ~~~~g~~~~A~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~--~~~g~~~~ 432 (461)
+.+.|++-+|+..+.+.+...... ....++..|...|... ...+.+.+... ..+....|..+-+-| .+.|++.+
T Consensus 435 ~~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~ 513 (566)
T PF07575_consen 435 LLKEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFRE 513 (566)
T ss_dssp HHHHHHHHHHHHHHH-----------------------------------------------------------------
T ss_pred HHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHH
Confidence 233444555555554442111111 1112333343333322 12222221110 011111222222222 34578888
Q ss_pred HHHHHHHHHHcCCccccCcc
Q 038303 433 TNKIRDEIRRMGLKKKTGCS 452 (461)
Q Consensus 433 A~~~~~~m~~~g~~~~~~~~ 452 (461)
|.+.+-.+...++.|..-+.
T Consensus 514 Aa~~Lv~Ll~~~~~Pk~f~~ 533 (566)
T PF07575_consen 514 AASLLVSLLKSPIAPKSFWP 533 (566)
T ss_dssp --------------------
T ss_pred HHHHHHHHHCCCCCcHHHHH
Confidence 88888777777776655443
No 423
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=55.40 E-value=1.8e+02 Score=27.22 Aligned_cols=180 Identities=11% Similarity=0.027 Sum_probs=71.8
Q ss_pred ChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHH
Q 038303 209 NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA 288 (461)
Q Consensus 209 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 288 (461)
+...-.....++...+..+-...+...+.. +++.+....+.++...+. +-...+..-+..++...-..-+.++.
T Consensus 99 ~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~-----~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG 172 (410)
T TIGR02270 99 PEGLCAGIQAALGWLGGRQAEPWLEPLLAA-----SEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALG 172 (410)
T ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHhcC-----CChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 344455555555555555444444333311 222333333344433221 11222222233444444445555555
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHH
Q 038303 289 MNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAE 368 (461)
Q Consensus 289 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 368 (461)
..++.+ +...+..+.. .+|...-...+.+....|. +.|...+..... .++......+...+... ..+++.
T Consensus 173 ~l~~~~-a~~~L~~al~---d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~----~~g~~~~~~l~~~lal~-~~~~a~ 242 (410)
T TIGR02270 173 ELPRRL-SESTLRLYLR---DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQV----LEGGPHRQRLLVLLAVA-GGPDAQ 242 (410)
T ss_pred hhcccc-chHHHHHHHc---CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHh----ccCccHHHHHHHHHHhC-CchhHH
Confidence 555432 2222333322 2344444444555555555 444444433222 12222222222222222 222444
Q ss_pred HHHHhCCCCchhhHHHHHHHHHHhcCChHHHHHHHHHH
Q 038303 369 AFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDL 406 (461)
Q Consensus 369 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 406 (461)
..+......+. +-...+.++.+.|+...+..+.+.+
T Consensus 243 ~~L~~ll~d~~--vr~~a~~AlG~lg~p~av~~L~~~l 278 (410)
T TIGR02270 243 AWLRELLQAAA--TRREALRAVGLVGDVEAAPWCLEAM 278 (410)
T ss_pred HHHHHHhcChh--hHHHHHHHHHHcCCcchHHHHHHHh
Confidence 44444422222 3334445555555555554444443
No 424
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=55.34 E-value=13 Score=27.91 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=25.4
Q ss_pred HhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 038303 21 SLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFY 55 (461)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 55 (461)
...|.-.+|-.+|..|++.|-+|| .|+.|+...
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 345666789999999999998887 677777643
No 425
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.02 E-value=1.3e+02 Score=30.76 Aligned_cols=177 Identities=11% Similarity=0.054 Sum_probs=110.1
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHH
Q 038303 186 ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265 (461)
Q Consensus 186 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 265 (461)
-+.++++.+.+.+...--| ..+|..+.+.|-.+.|..+.+.-.. -.......|+++.|
T Consensus 605 i~k~ydeVl~lI~ns~LvG---------qaiIaYLqKkgypeiAL~FVkD~~t-------------RF~LaLe~gnle~a 662 (1202)
T KOG0292|consen 605 LNKKYDEVLHLIKNSNLVG---------QAIIAYLQKKGYPEIALHFVKDERT-------------RFELALECGNLEVA 662 (1202)
T ss_pred HhhhhHHHHHHHHhcCccc---------HHHHHHHHhcCCcceeeeeecCcch-------------heeeehhcCCHHHH
Confidence 3556677665555443222 2344445566666666554433222 12223567888888
Q ss_pred HHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCC
Q 038303 266 IQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 345 (461)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 345 (461)
.+.-..+- +..+|..|...-.+.|+.+-|+..|++.+. |..|--.|.-.|+.++-.++-+.... +
T Consensus 663 le~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~----r 727 (1202)
T KOG0292|consen 663 LEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEI----R 727 (1202)
T ss_pred HHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHh----h
Confidence 87765554 556899999999999999999999987754 34444457778888887776655544 1
Q ss_pred CCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 038303 346 PQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVN 408 (461)
Q Consensus 346 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 408 (461)
-|... ....-.-.|+.++=.++++..+..|-.. .....+|.-++|.++.++...
T Consensus 728 ~D~~~---~~qnalYl~dv~ervkIl~n~g~~~lay------lta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 728 NDATG---QFQNALYLGDVKERVKILENGGQLPLAY------LTAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred hhhHH---HHHHHHHhccHHHHHHHHHhcCcccHHH------HHHhhcCcHHHHHHHHHhhcc
Confidence 22111 1111223688899899998886544221 123567888889888888775
No 426
>PRK12798 chemotaxis protein; Reviewed
Probab=54.57 E-value=1.8e+02 Score=26.98 Aligned_cols=185 Identities=15% Similarity=0.108 Sum_probs=103.2
Q ss_pred cCCHHHHHHHHHHccCC----ChhhHHHHHHH-HHhcCChHHHHHHHHHHHhcCCCCCHh----HHHHHHHHHHcCCChH
Q 038303 259 CGDVGIAIQVFNMLAYK----DKISWSTVISG-LAMNGCGRQALQLFSLMIINAVFPDDV----TFIALISACSHGGLVD 329 (461)
Q Consensus 259 ~g~~~~a~~~~~~~~~~----~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~ 329 (461)
.|+-.++.+.+..+... ....|-.|+.+ .....++.+|+++|++..- ..|... ...--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 57788888888777633 34456666654 3445678888888887654 234332 2333344456778888
Q ss_pred HHHHHHHHhHhhcCCCCCcchHH-HHHHHHhh---cCCHHHHHHHHHhCCCCchhhHHHHHHHHHHhcCChHHHHHHHHH
Q 038303 330 QGLILFKAMSTVYEIVPQMQHYA-CVVDMYGR---AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQD 405 (461)
Q Consensus 330 ~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~---~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 405 (461)
++..+-......+...|-..-|. .+...+.+ .-+.+.-..++..|.-.-....|..+.+.-...|+.+.|...-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 87777666666455555433322 22233333 233445555666664333445777777777888888888888877
Q ss_pred HhhcCCCC----hhHHHHHHHHHhccCChhhHHHHHHHHHHcCC
Q 038303 406 LVNKKGVS----VGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445 (461)
Q Consensus 406 ~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 445 (461)
.......+ ......-.-+-.-..++++|.+.+..+-...+
T Consensus 283 A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L 326 (421)
T PRK12798 283 ALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKL 326 (421)
T ss_pred HHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhC
Confidence 77643211 11111111112233456666666655544333
No 427
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=54.53 E-value=28 Score=30.37 Aligned_cols=45 Identities=4% Similarity=-0.107 Sum_probs=18.6
Q ss_pred hcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHH
Q 038303 392 IHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKI 436 (461)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 436 (461)
+.|+.+.|..+|+.+....|.++.+...++......+++-+|-++
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~ 172 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQC 172 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhh
Confidence 334444444444444444444444444444333333333333333
No 428
>PF15469 Sec5: Exocyst complex component Sec5
Probab=53.20 E-value=1.2e+02 Score=24.45 Aligned_cols=28 Identities=14% Similarity=0.304 Sum_probs=22.5
Q ss_pred CChhhHHHHHHHHHHcCCccccCccccc
Q 038303 428 DRWEDTNKIRDEIRRMGLKKKTGCSWIE 455 (461)
Q Consensus 428 g~~~~A~~~~~~m~~~g~~~~~~~~~~~ 455 (461)
...++..+++..+.+.+..++|.+.|+.
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~~l~ 180 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWYWLE 180 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 4667778888888888888899888875
No 429
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=52.95 E-value=66 Score=22.02 Aligned_cols=63 Identities=13% Similarity=0.111 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHcCCChHHH
Q 038303 29 ALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEA 95 (461)
Q Consensus 29 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 95 (461)
+..++..+.+.|+- +..- .-..-+...+.+.|.++++.++.....+|..+..++-..|...-|
T Consensus 18 ~~~v~~~L~~~~Vl-t~~~---~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGVF-TPDM---IEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCCC-CHHH---HHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 45678888887764 3332 223334566788999999999989999999999998887765444
No 430
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=52.27 E-value=53 Score=20.09 Aligned_cols=33 Identities=15% Similarity=0.123 Sum_probs=22.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHH
Q 038303 179 TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLV 214 (461)
Q Consensus 179 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 214 (461)
.+.-++.+.|++++|.+..+.+.+ +.|+-....
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~---~eP~N~Qa~ 38 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE---IEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH---HTTS-HHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh---hCCCcHHHH
Confidence 345567888888888888888887 666655443
No 431
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=52.23 E-value=1.5e+02 Score=25.23 Aligned_cols=115 Identities=14% Similarity=0.028 Sum_probs=76.9
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCHhH-HHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcch-HHHHHHHHhhcCCH
Q 038303 287 LAMNGCGRQALQLFSLMIINAVFPDDVT-FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQH-YACVVDMYGRAGLL 364 (461)
Q Consensus 287 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~ 364 (461)
|....+++.|...|.+.+. +.|+..+ |..-+.++.+..+++.+..--.+..+ +.|+..- ...+..++.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq---l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ---LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh---cChHHHHHHHHHHHHHHhhccc
Confidence 4555678889988877776 5677744 55667778888888888776666654 5566433 33455666777888
Q ss_pred HHHHHHHHhC-------CCCchhhHHHHHHHHHHhcCChHHHHHHHHHH
Q 038303 365 EEAEAFIREM-------PIEAEWSVWGALLNACRIHRNDEMFDRIRQDL 406 (461)
Q Consensus 365 ~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 406 (461)
++|...+++. +..+....+..|..+=.+.=...+..++.++.
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 8888888776 44455566777777755555555666655543
No 432
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=51.96 E-value=1.3e+02 Score=24.50 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=12.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHcc
Q 038303 251 AVINMYVKCGDVGIAIQVFNMLA 273 (461)
Q Consensus 251 ~li~~~~~~g~~~~a~~~~~~~~ 273 (461)
+++..|-+.-++.+..++++.+.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~ 159 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLH 159 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666555543
No 433
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=51.25 E-value=1.3e+02 Score=24.44 Aligned_cols=17 Identities=6% Similarity=0.192 Sum_probs=11.5
Q ss_pred hccCChhhHHHHHHHHH
Q 038303 425 AGADRWEDTNKIRDEIR 441 (461)
Q Consensus 425 ~~~g~~~~A~~~~~~m~ 441 (461)
.+.|++++|.+.++-|.
T Consensus 132 l~~~~~~~Ae~~~~~ME 148 (204)
T COG2178 132 LRKGSFEEAERFLKFME 148 (204)
T ss_pred HHhccHHHHHHHHHHHH
Confidence 35677777777776664
No 434
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=50.95 E-value=39 Score=28.22 Aligned_cols=56 Identities=9% Similarity=0.015 Sum_probs=27.3
Q ss_pred hhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCh
Q 038303 359 GRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414 (461)
Q Consensus 359 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 414 (461)
.+.++.+.|.+++.+. ...| ....|-.+...-.+.|+.+.|.+.+++..+..|++.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3445555555555554 2222 223444444444555555555555555555555543
No 435
>PRK09857 putative transposase; Provisional
Probab=50.44 E-value=1.2e+02 Score=26.82 Aligned_cols=64 Identities=8% Similarity=0.089 Sum_probs=43.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcCCccc
Q 038303 385 ALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448 (461)
Q Consensus 385 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 448 (461)
.++......++.++..++++.+.+..|.......+++.-+.+.|.-+++.++..+|...|+.++
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3444434556666666666666665555555566777777777877888899999999888754
No 436
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=50.32 E-value=45 Score=21.48 Aligned_cols=52 Identities=8% Similarity=-0.033 Sum_probs=42.0
Q ss_pred CCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhc
Q 038303 6 SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV 58 (461)
Q Consensus 6 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 58 (461)
+.|+...++.++...+.-.-.++++..+....+.|. .+..+|..-++.+++.
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 457888899999999999999999999999999886 4777777777777664
No 437
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=49.93 E-value=1.2e+02 Score=23.44 Aligned_cols=31 Identities=13% Similarity=-0.102 Sum_probs=13.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHhH
Q 038303 284 ISGLAMNGCGRQALQLFSLMIINAVFPDDVT 314 (461)
Q Consensus 284 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 314 (461)
+..+...++.-.|.++++++.+.+...+..|
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 3333334344444444444444444333333
No 438
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=47.83 E-value=1.2e+02 Score=24.25 Aligned_cols=36 Identities=14% Similarity=0.033 Sum_probs=15.3
Q ss_pred CChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCC
Q 038303 291 GCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326 (461)
Q Consensus 291 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 326 (461)
++.-.|.++++.+.+.+..++..|.-.-|..+...|
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 333444444444444444444444333333443333
No 439
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=47.59 E-value=2.1e+02 Score=25.60 Aligned_cols=54 Identities=6% Similarity=0.034 Sum_probs=30.4
Q ss_pred HHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHH
Q 038303 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF 269 (461)
Q Consensus 216 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 269 (461)
+..+..+.|+..+|.+.++.+.+...+..-..+...|+.++....-+.++..++
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445567777777777776663332222233456677776666555555554
No 440
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=46.97 E-value=69 Score=27.45 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=8.7
Q ss_pred HHHcCCChHHHHHHHHHh
Q 038303 321 ACSHGGLVDQGLILFKAM 338 (461)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~ 338 (461)
-|...|++++|.++|+.+
T Consensus 187 ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 187 EYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 344445555555554444
No 441
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.76 E-value=2.7e+02 Score=26.59 Aligned_cols=120 Identities=12% Similarity=0.030 Sum_probs=72.4
Q ss_pred cCCChHHHHHHHHHhHhhcCCCCCcch-------HHHHHHHH-hhcCCHHHHHHHHHhC-C--CCchhhHHH--HHHHHH
Q 038303 324 HGGLVDQGLILFKAMSTVYEIVPQMQH-------YACVVDMY-GRAGLLEEAEAFIREM-P--IEAEWSVWG--ALLNAC 390 (461)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~~l~~~~-~~~g~~~~A~~~~~~~-~--~~p~~~~~~--~l~~~~ 390 (461)
-.|++.+|++-...|..-..-.|.+.. ...++..| +..+.++.|+.-|... + .+-|...+. .+.-.|
T Consensus 335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~Y 414 (629)
T KOG2300|consen 335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISY 414 (629)
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Confidence 379999999999999875444555221 22333333 4568899999988877 2 222333222 233338
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCh-------hHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 038303 391 RIHRNDEMFDRIRQDLVNKKGVSV-------GTFALMSNTFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 443 (461)
.+.|+.+...++++.+--.+..+. ..+..-+-.....+++.||...+.+-.+.
T Consensus 415 L~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkm 474 (629)
T KOG2300|consen 415 LRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKM 474 (629)
T ss_pred HHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 888887777777666533221111 12333333345789999999988876543
No 442
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=46.41 E-value=2.2e+02 Score=26.33 Aligned_cols=56 Identities=13% Similarity=-0.108 Sum_probs=38.9
Q ss_pred HHHHhhCCHHHHHHHHHHHHHhCCCccHH--HHHHHHHHHH--hcCCHHHHHHHHhhCCCC
Q 038303 18 KACSLAHPHQKALEIHAHVIEYGHLHDIF--IQNSLLHFYV--TVKDIFSAHQIFNSVVFP 74 (461)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 74 (461)
..+...+++..|.++++.+.+. ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455788999999999999886 555444 4444445443 457888888888877443
No 443
>PRK13342 recombination factor protein RarA; Reviewed
Probab=46.37 E-value=2.6e+02 Score=26.30 Aligned_cols=168 Identities=13% Similarity=-0.028 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHhc---CCC-CCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHH
Q 038303 189 FCKEAVSVFQEMEKT---KEA-EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264 (461)
Q Consensus 189 ~~~~a~~~~~~m~~~---~~~-~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 264 (461)
..++...++...... | . ..+......++..+ .|+...+..+++.+.. . ........+.+
T Consensus 152 s~e~i~~lL~~~l~~~~~~-~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~-----------~---~~~It~~~v~~ 214 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERG-LVELDDEALDALARLA--NGDARRALNLLELAAL-----------G---VDSITLELLEE 214 (413)
T ss_pred CHHHHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHH-----------c---cCCCCHHHHHH
Q ss_pred HHHHHHHccCCChhhHHHHHHHHHhc---CChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCC-----ChHHHHHHHH
Q 038303 265 AIQVFNMLAYKDKISWSTVISGLAMN---GCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG-----LVDQGLILFK 336 (461)
Q Consensus 265 a~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~ 336 (461)
+..........+...+..++.++.+. ++++.|+..+..|.+.|..|....-..++.++...| ....|...++
T Consensus 215 ~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~ 294 (413)
T PRK13342 215 ALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAAD 294 (413)
T ss_pred HHhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHH
Q ss_pred HhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 038303 337 AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 337 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
.... -|++-........+-.++.+-+...+...+..+
T Consensus 295 ~~~~-~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~a 331 (413)
T PRK13342 295 AVER-IGMPEGRIALAQAVIYLALAPKSNAAYTAINAA 331 (413)
T ss_pred HHHH-hCCcHHHHHHHHHHHHHHcCCCccHHHHHHHHH
No 444
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=45.87 E-value=2.2e+02 Score=25.39 Aligned_cols=81 Identities=16% Similarity=0.066 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHHhhcCC---CCcchHHHHHHHHHHhcCCHHHHHHHHHHccCC-ChhhHHHHHHHHHhcCChHHHHHHHH
Q 038303 226 LSFGKYVHSYISTRYDL---SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DKISWSTVISGLAMNGCGRQALQLFS 301 (461)
Q Consensus 226 ~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 301 (461)
.+.+.+.|+........ ..++.....+.....+.|+.+....+++..... +......++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 34455555555542111 233333344444455555544444444444432 34444555555555555555555555
Q ss_pred HHHhc
Q 038303 302 LMIIN 306 (461)
Q Consensus 302 ~m~~~ 306 (461)
.....
T Consensus 226 ~~l~~ 230 (324)
T PF11838_consen 226 LLLSN 230 (324)
T ss_dssp HHHCT
T ss_pred HHcCC
Confidence 55543
No 445
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.75 E-value=1e+02 Score=30.29 Aligned_cols=85 Identities=14% Similarity=0.008 Sum_probs=53.9
Q ss_pred hhcCCHHHHHHHHHhC-C-CCch------hhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCCh
Q 038303 359 GRAGLLEEAEAFIREM-P-IEAE------WSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRW 430 (461)
Q Consensus 359 ~~~g~~~~A~~~~~~~-~-~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 430 (461)
.+..++..+.+.|..- . +..| ......+--+|....+.+.|.++++++.+.+|.++.+-..+..+....|.-
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcch
Confidence 3455666666665533 1 1111 112334444466777778888888888777777777777777777778888
Q ss_pred hhHHHHHHHHHHc
Q 038303 431 EDTNKIRDEIRRM 443 (461)
Q Consensus 431 ~~A~~~~~~m~~~ 443 (461)
++|+.++......
T Consensus 445 e~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 445 EEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHhh
Confidence 8887777666443
No 446
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=45.28 E-value=1.2e+02 Score=26.03 Aligned_cols=51 Identities=6% Similarity=-0.118 Sum_probs=27.2
Q ss_pred HHhcCChHHHHHHHHHHhhcC------CCChhHHHHHHHHHhccCChhhHHHHHHHH
Q 038303 390 CRIHRNDEMFDRIRQDLVNKK------GVSVGTFALMSNTFAGADRWEDTNKIRDEI 440 (461)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 440 (461)
|...|+++.|..+|+.+.... .....+...+..++.+.|+.++.+.+.=++
T Consensus 188 y~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 188 YFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 555566666666666554311 222344555566666666666665554433
No 447
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=45.28 E-value=2.5e+02 Score=25.82 Aligned_cols=54 Identities=9% Similarity=0.107 Sum_probs=30.3
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCc--hhhHHHHHHHH-HHhcCChHHHHHHHHHHhh
Q 038303 355 VDMYGRAGLLEEAEAFIREM-PIEA--EWSVWGALLNA-CRIHRNDEMFDRIRQDLVN 408 (461)
Q Consensus 355 ~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~ 408 (461)
+..+.+.|-+..|.++.+-+ ...| |+.....+|.. ..+.++++-.+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 45566677777777766665 3333 33333444444 3456666666666665443
No 448
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=45.20 E-value=3.5e+02 Score=27.49 Aligned_cols=179 Identities=12% Similarity=0.117 Sum_probs=97.2
Q ss_pred HHHHHHHHhhcCCCCc---chHHHHHHHHHHhcCCHHHHHHHHHHccC-CCh----------hhHHHHHHHHHhcCChHH
Q 038303 230 KYVHSYISTRYDLSVS---NLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDK----------ISWSTVISGLAMNGCGRQ 295 (461)
Q Consensus 230 ~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~----------~~~~~l~~~~~~~~~~~~ 295 (461)
..++.+|.+ .-..|+ ..+...++-.|-...+++...++.+.++. ||. ..|.-.++---+-|+-++
T Consensus 183 ~~~L~~mR~-RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRak 261 (1226)
T KOG4279|consen 183 NDYLDKMRT-RLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAK 261 (1226)
T ss_pred HHHHHHHHh-hcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHH
Confidence 344555555 333333 33445666667777778888888777663 211 123333444445678888
Q ss_pred HHHHHHHHHhcC--CCCCHhH-----HHHHH--HHHHcCCChHHHHHHHHHhHhhcCCCCCcc---hHHHHHHHHhhcCC
Q 038303 296 ALQLFSLMIINA--VFPDDVT-----FIALI--SACSHGGLVDQGLILFKAMSTVYEIVPQMQ---HYACVVDMYGRAGL 363 (461)
Q Consensus 296 a~~~~~~m~~~g--~~p~~~~-----~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~ 363 (461)
|+...-.|.+.. +.||... |.-+. ..|...+..+.|.+.|++.-+ +.|+.. .+..|+.+ +|+
T Consensus 262 AL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe---veP~~~sGIN~atLL~a---aG~ 335 (1226)
T KOG4279|consen 262 ALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE---VEPLEYSGINLATLLRA---AGE 335 (1226)
T ss_pred HHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc---cCchhhccccHHHHHHH---hhh
Confidence 888888777643 5566533 22221 225556778888888887744 556543 33333332 222
Q ss_pred -HHHHHHHHH------hC-CCCchh---hH-H--HHHHHHHHhcCChHHHHHHHHHHhhcCCCChh
Q 038303 364 -LEEAEAFIR------EM-PIEAEW---SV-W--GALLNACRIHRNDEMFDRIRQDLVNKKGVSVG 415 (461)
Q Consensus 364 -~~~A~~~~~------~~-~~~p~~---~~-~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 415 (461)
++...++-. .+ +.+-.. .. | ...+.+-.-..++..|.+..++|.+.+||.-.
T Consensus 336 ~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WY 401 (1226)
T KOG4279|consen 336 HFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWY 401 (1226)
T ss_pred hccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceeh
Confidence 222221111 11 111111 01 1 12234445678899999999999998888643
No 449
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=44.87 E-value=4.1e+02 Score=28.21 Aligned_cols=256 Identities=9% Similarity=-0.098 Sum_probs=126.8
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCC
Q 038303 163 GYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242 (461)
Q Consensus 163 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~ 242 (461)
..+...+..+|..+-..-+..+.+.+..+ +...+.+..+. ++...-...+.++...+........+.....
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D----~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---- 694 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALGD----GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---- 694 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHcC----CCHHHHHHHHHHHHHHHhccCchHHHHHHhc----
Confidence 34445555667666666666666666533 44444444432 2333333444444333221112222223322
Q ss_pred CCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 038303 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322 (461)
Q Consensus 243 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 322 (461)
.++..+-...+.++...+.- ....+...+..+|...-...+.++.+.+..+. +.... -.++...-.....++
T Consensus 695 ~~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL 766 (897)
T PRK13800 695 SPDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGL 766 (897)
T ss_pred CCCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHH
Confidence 14555555555555544321 12334455566676666666777766654432 12222 234555555566666
Q ss_pred HcCCChHH-HHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCchhhHHHHHHHHHHhcCChHHHHH
Q 038303 323 SHGGLVDQ-GLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDR 401 (461)
Q Consensus 323 ~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 401 (461)
...+..+. +...+..+.. .++...-...+.++.+.|..+.+...+..+-..++...=...+.++...+..+ +..
T Consensus 767 ~~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~-a~~ 841 (897)
T PRK13800 767 ATLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADV-AVP 841 (897)
T ss_pred HHhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccc-hHH
Confidence 66554432 3344444433 25566667777777777776555444444422345444445556666665533 333
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHH
Q 038303 402 IRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442 (461)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 442 (461)
.+..+. ..++..+-...+.++.+.+....+...+....+
T Consensus 842 ~L~~~L--~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 842 ALVEAL--TDPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHh--cCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 333333 234455666666666665333455555554443
No 450
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=44.83 E-value=1.3e+02 Score=29.69 Aligned_cols=74 Identities=12% Similarity=0.122 Sum_probs=39.9
Q ss_pred HHHHHhcccchhHHHHHHHHHHHhh--cCCCChhHHHHHHHHHHHcCChh------hHHHHHhcCC-CCchhHHHHHHHH
Q 038303 113 SVLSACSSLVSHKLGKAIHAHSLRN--LNENNIILDNAILDFYIRCGSLA------SCGYLFVKMP-KRNVVSWTTMIGG 183 (461)
Q Consensus 113 ~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~-~~~~~~~~~li~~ 183 (461)
+++.+|...|++..+.++++..... |-+.=...+|..++...+.|.++ .|.+++++.. .-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 6677777777777777777766543 22223445566666666666543 2333333322 2445555555544
Q ss_pred HHh
Q 038303 184 YAE 186 (461)
Q Consensus 184 ~~~ 186 (461)
-..
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 433
No 451
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=44.78 E-value=2.7e+02 Score=26.03 Aligned_cols=57 Identities=16% Similarity=0.026 Sum_probs=28.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhc--C----CC-CCHhHHHHHHHHHHcCCChHHHHHHHHHh
Q 038303 282 TVISGLAMNGCGRQALQLFSLMIIN--A----VF-PDDVTFIALISACSHGGLVDQGLILFKAM 338 (461)
Q Consensus 282 ~l~~~~~~~~~~~~a~~~~~~m~~~--g----~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 338 (461)
.|++..+-.|++..|+++++.+.-. + +. -...+|-.+.-+|.-.+++.+|.+.|...
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666665543211 1 11 11234445555566666666666666554
No 452
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=44.67 E-value=3.4e+02 Score=27.19 Aligned_cols=49 Identities=16% Similarity=0.089 Sum_probs=30.2
Q ss_pred cCCChHHHHHHHHHhHhhcCCCCC-----cchHHHHHH--HHhhcCCHHHHHHHHH
Q 038303 324 HGGLVDQGLILFKAMSTVYEIVPQ-----MQHYACVVD--MYGRAGLLEEAEAFIR 372 (461)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~--~~~~~g~~~~A~~~~~ 372 (461)
-.+++..|...++.+.....-.|+ ...+..++. .+...|+.+.|...|.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 468888898888888763322222 112222222 2345689999999997
No 453
>PRK10941 hypothetical protein; Provisional
Probab=44.53 E-value=2.1e+02 Score=24.89 Aligned_cols=77 Identities=9% Similarity=-0.029 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHH
Q 038303 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINM 255 (461)
Q Consensus 177 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 255 (461)
.+.+-.+|.+.++++.|+.+.+.+... .+.+..-+..---.+.+.|.+..|..=++...+...-.|+.......+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 455667788888888888888888874 33334445555555777777777776666665545555555544444443
No 454
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=44.51 E-value=1.8e+02 Score=25.45 Aligned_cols=29 Identities=3% Similarity=-0.048 Sum_probs=19.1
Q ss_pred HhHHHHHHHHHHcCCChHHHHHHHHHhHh
Q 038303 312 DVTFIALISACSHGGLVDQGLILFKAMST 340 (461)
Q Consensus 312 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 340 (461)
...+..+...|++.++.+.+.+..++..+
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~ 143 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMR 143 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 35566667777777777777776655544
No 455
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=44.49 E-value=2.3e+02 Score=25.14 Aligned_cols=22 Identities=9% Similarity=0.261 Sum_probs=17.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHH
Q 038303 276 DKISWSTVISGLAMNGCGRQAL 297 (461)
Q Consensus 276 ~~~~~~~l~~~~~~~~~~~~a~ 297 (461)
...+|..|+.++|..|+.+-.+
T Consensus 320 hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 320 HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHHhhhHHHHHHhcCChHHHHH
Confidence 4567888999999999877543
No 456
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=43.70 E-value=64 Score=23.51 Aligned_cols=48 Identities=15% Similarity=0.023 Sum_probs=35.1
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHH
Q 038303 15 QALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIF 62 (461)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 62 (461)
.++..+...+..-.|.++++.+.+.+..++..|.-..|+.+...|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 456666666777889999999988877777766666677777776543
No 457
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=43.58 E-value=48 Score=18.25 Aligned_cols=23 Identities=4% Similarity=0.137 Sum_probs=17.1
Q ss_pred HHHHHHHHHhccCChhhHHHHHH
Q 038303 416 TFALMSNTFAGADRWEDTNKIRD 438 (461)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~ 438 (461)
.+..++-.+...|++++|.++++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 45566778888999999999954
No 458
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.72 E-value=2.5e+02 Score=26.94 Aligned_cols=36 Identities=8% Similarity=-0.003 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHh
Q 038303 278 ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDV 313 (461)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 313 (461)
..+..++.+....+....|+.++.+|.+.|..|...
T Consensus 249 ~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 249 EFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 334445555444444567777888888777666543
No 459
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=41.49 E-value=1.5e+02 Score=22.73 Aligned_cols=64 Identities=11% Similarity=-0.035 Sum_probs=42.9
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCCh
Q 038303 364 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRW 430 (461)
Q Consensus 364 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 430 (461)
.+.|.++.+-|+-. + ............|++..|.++.+.+...+|.+...-...+.+|.+.|.-
T Consensus 57 ~~~A~~~v~l~GG~-d--~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 57 EEEAKRYVELAGGA-D--KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHTTCH-H--HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCH-H--HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 45666677777421 1 1222334466789999999999999999999998888888888766543
No 460
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=41.48 E-value=82 Score=22.93 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=30.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChH
Q 038303 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVD 329 (461)
Q Consensus 283 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 329 (461)
++..+...+..-.|.++++.+.+.+..++..|.-..++.+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44455555566667777777777766666666666666666665543
No 461
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=41.23 E-value=1.5e+02 Score=22.18 Aligned_cols=59 Identities=15% Similarity=0.186 Sum_probs=37.6
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhCCCCchhhHHH-HHHHHHHhcCChHHHHHHHHHH
Q 038303 348 MQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG-ALLNACRIHRNDEMFDRIRQDL 406 (461)
Q Consensus 348 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~ 406 (461)
..+..++..++.-.|..++|.++++..+-.+.....| -++..|.+..+.++..++-++.
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4455667777777788888888887775444444433 3666677776666666555443
No 462
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=41.22 E-value=2e+02 Score=23.52 Aligned_cols=69 Identities=10% Similarity=0.039 Sum_probs=43.0
Q ss_pred CCCCCCCcchHHHHHHHHHhhC----CHHHHHHHHHHHHHhCCCccHH----HHHHHHHHHHhcCCHHHHHHHHhhC
Q 038303 3 SCPSSYNHYTFTQALKACSLAH----PHQKALEIHAHVIEYGHLHDIF----IQNSLLHFYVTVKDIFSAHQIFNSV 71 (461)
Q Consensus 3 ~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~ 71 (461)
+.|+.+|...++-++..+.... .++.+..+=......++.++-. ....=+..|-..||+.+--.+|-..
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv 77 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINV 77 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhH
Confidence 3588899999999988877654 4444555555555555554433 2222244566678877776666444
No 463
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=40.95 E-value=1.3e+02 Score=21.85 Aligned_cols=39 Identities=13% Similarity=0.068 Sum_probs=24.9
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Q 038303 15 QALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHF 54 (461)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 54 (461)
++++.+.+....++|+++++.|.+.|- .+...-+.|-..
T Consensus 66 tViD~lrRC~T~EEALEVInylek~GE-It~e~A~eLr~~ 104 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRGE-ITPEEAKELRSI 104 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 355667777778888888888888773 344444444333
No 464
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=40.89 E-value=3.3e+02 Score=26.03 Aligned_cols=38 Identities=8% Similarity=-0.166 Sum_probs=33.5
Q ss_pred HHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhcc
Q 038303 390 CRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427 (461)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (461)
|...|++-.|.+.|.+.......+|..|..|+.+|.-.
T Consensus 345 ~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 345 YLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 67889999999999999998888999999999988643
No 465
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=40.88 E-value=2.6e+02 Score=24.82 Aligned_cols=72 Identities=11% Similarity=0.153 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhh----------cCCHHH
Q 038303 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR----------AGLLEE 366 (461)
Q Consensus 297 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~ 366 (461)
.++|+.|.+.++.|.-..|..+.-.+.+.=.+...+.+|+.+..+ |. -|..|+..||. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD----~~--rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD----PQ--RFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC----hh--hhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 467778888888888888887777777777888888888877662 21 15555555443 466666
Q ss_pred HHHHHHhC
Q 038303 367 AEAFIREM 374 (461)
Q Consensus 367 A~~~~~~~ 374 (461)
..++++.-
T Consensus 337 nmkLLQ~y 344 (370)
T KOG4567|consen 337 NMKLLQNY 344 (370)
T ss_pred HHHHHhcC
Confidence 66666655
No 466
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=40.79 E-value=2.3e+02 Score=24.11 Aligned_cols=125 Identities=13% Similarity=0.069 Sum_probs=72.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHH
Q 038303 251 AVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQ 330 (461)
Q Consensus 251 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 330 (461)
..+..|.+.-++.-|....+++.+|= .+-.++ --|.+..+..--..+.+-....++.-+......++ +...|+..+
T Consensus 135 RtMEiyS~ttRFalaCN~s~KIiEPI-QSRCAi-LRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQ 210 (333)
T KOG0991|consen 135 RTMEIYSNTTRFALACNQSEKIIEPI-QSRCAI-LRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQ 210 (333)
T ss_pred HHHHHHcccchhhhhhcchhhhhhhH-HhhhHh-hhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHH
Confidence 34566777777777777777666551 111122 22444444444444444445555665555555554 456788888
Q ss_pred HHHHHHHhHhhcCC-----------CCCcchHHHHHHHHhhcCCHHHHHHHHHhC---CCCchh
Q 038303 331 GLILFKAMSTVYEI-----------VPQMQHYACVVDMYGRAGLLEEAEAFIREM---PIEAEW 380 (461)
Q Consensus 331 a~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~ 380 (461)
|+.-++.-...+|. .|.+.....++..|. .+++++|.+.+.++ +..|..
T Consensus 211 alNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 211 ALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred HHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 88777766543332 255666666666554 46788888888877 555544
No 467
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=40.41 E-value=2.7e+02 Score=24.93 Aligned_cols=91 Identities=12% Similarity=0.059 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHccCC--------ChhhHHHHHHH-HHhcCChHHHHHHHHHHHhcCCCCCH----hH
Q 038303 248 VGNAVINMYVKCGDVGIAIQVFNMLAYK--------DKISWSTVISG-LAMNGCGRQALQLFSLMIINAVFPDD----VT 314 (461)
Q Consensus 248 ~~~~li~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~g~~p~~----~~ 314 (461)
..-....-|++.|+.+.|.+.+..-.+. |+..+..-+.. |....-+.+-++..+.+.+.|..-+. .+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 3344556677777777777776554432 33333322222 22222234444445555555543332 23
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHh
Q 038303 315 FIALISACSHGGLVDQGLILFKAMST 340 (461)
Q Consensus 315 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 340 (461)
|..+- |....++.+|-.+|-+...
T Consensus 186 Y~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 186 YQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 33322 3445677777777765544
No 468
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=40.26 E-value=12 Score=22.71 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=16.5
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCh
Q 038303 187 RGFCKEAVSVFQEMEKTKEAEPNE 210 (461)
Q Consensus 187 ~~~~~~a~~~~~~m~~~~~~~~~~ 210 (461)
.-+++.|...|.++...|.+||+.
T Consensus 26 ~Wd~~~A~~~F~~l~~~~~IP~eA 49 (51)
T PF03943_consen 26 NWDYERALQNFEELKAQGKIPPEA 49 (51)
T ss_dssp TT-CCHHHHHHHHCCCTT-S-CCC
T ss_pred CCCHHHHHHHHHHHHHcCCCChHh
Confidence 447788999998888887677764
No 469
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=40.02 E-value=2.6e+02 Score=24.53 Aligned_cols=201 Identities=8% Similarity=0.008 Sum_probs=94.4
Q ss_pred HHHhcccchhHHHHHHHHHHHhhcCCCChhHH-------HHHHHHHHHcCChhhHHHHHhcCCCCchhHHHHHHHHHHhc
Q 038303 115 LSACSSLVSHKLGKAIHAHSLRNLNENNIILD-------NAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAER 187 (461)
Q Consensus 115 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 187 (461)
.+-..+.+++++|...+.+.+..|...+..+. ..+...|...|+...-.+......+ .+.-+.+.
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre--------~m~~ftk~ 81 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSRE--------AMEDFTKP 81 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHH--------HHHHhcch
Confidence 34456677888888888888887776665443 3466677777776554443332211 01111111
Q ss_pred CChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchh--hhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHH
Q 038303 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL--SFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 265 (461)
Q Consensus 188 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 265 (461)
+..++.+.+.+. ++-....+...+..+...=.| .+-..+++.-.+ ..++..+.+.|.+.+|
T Consensus 82 ----k~~KiirtLiek--f~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le-----------~Kli~l~y~~~~Ysda 144 (421)
T COG5159 82 ----KITKIIRTLIEK--FPYSSDSLEDQIKVLTALIEWADREKRKFLRLELE-----------CKLIYLLYKTGKYSDA 144 (421)
T ss_pred ----hHHHHHHHHHHh--cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhcccHHHH
Confidence 111222222221 222222222222221111111 111122222222 6788889999999999
Q ss_pred HHHHHHcc--------CCChhhHHHH-HHHHHhcCChHHHHHHHHHHHh----cCCCCCHhHHHHHHHH--HHcCCChHH
Q 038303 266 IQVFNMLA--------YKDKISWSTV-ISGLAMNGCGRQALQLFSLMII----NAVFPDDVTFIALISA--CSHGGLVDQ 330 (461)
Q Consensus 266 ~~~~~~~~--------~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~----~g~~p~~~~~~~ll~~--~~~~~~~~~ 330 (461)
+.+.+.+. +++..+...+ -.+|-...+..++..-+...+. .-++|-...---|+.+ .|.-.++..
T Consensus 145 lalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dykt 224 (421)
T COG5159 145 LALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKT 224 (421)
T ss_pred HHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchh
Confidence 88765543 1222221111 1234444444444444433322 1134444444444444 345667777
Q ss_pred HHHHHHHhHh
Q 038303 331 GLILFKAMST 340 (461)
Q Consensus 331 a~~~~~~~~~ 340 (461)
|..+|-+..+
T Consensus 225 A~SYF~Ea~E 234 (421)
T COG5159 225 ASSYFIEALE 234 (421)
T ss_pred HHHHHHHHHh
Confidence 7777766655
No 470
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=39.92 E-value=1.2e+02 Score=24.98 Aligned_cols=50 Identities=16% Similarity=0.139 Sum_probs=33.0
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHhcCCHH
Q 038303 12 TFTQALKACSLAHPHQKALEIHAHVIEYGHLHDI-FIQNSLLHFYVTVKDIF 62 (461)
Q Consensus 12 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~ 62 (461)
..+.+++.|...|+++.|-++|.-+.+... .|. ..|..-+..+.+.+.-.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~-VDiR~~W~iG~eIL~~~~~~~ 93 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPE-VDIRSLWGIGAEILMRRGEQN 93 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCC-CChHhcchHHHHHHHcCCCcc
Confidence 367788888888999999999998887642 232 24554455555544433
No 471
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=39.65 E-value=80 Score=24.35 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=16.3
Q ss_pred HHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 038303 34 AHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV 71 (461)
Q Consensus 34 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 71 (461)
+.+.+.|.++++. -..++..+...++.-.|.++++.+
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l 46 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEEL 46 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHH
Confidence 3344444443332 223444444444445555555544
No 472
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=39.47 E-value=3.1e+02 Score=25.23 Aligned_cols=116 Identities=9% Similarity=-0.017 Sum_probs=73.2
Q ss_pred CHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHh------hcCCHHHHHHHHHhC--CCCchhhH
Q 038303 311 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG------RAGLLEEAEAFIREM--PIEAEWSV 382 (461)
Q Consensus 311 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~g~~~~A~~~~~~~--~~~p~~~~ 382 (461)
-..|+-.+-..|...|+.+.|.+++++..-..+- ++...+. ..|. .++ ...-|...
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~--------~~~~~F~~~~~~~~~g~--------~rL~~~~~eNR~f 102 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFER--------AFHPSFSPFRSNLTSGN--------CRLDYRRPENRQF 102 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------HHHHHhhhhhcccccCc--------cccCCccccchHH
Confidence 3355666666677788888877777766441110 0001110 0010 011 11113333
Q ss_pred HHH---HHHHHHhcCChHHHHHHHHHHhhcCCC-ChhHHHHHHHHHh-ccCChhhHHHHHHHHHH
Q 038303 383 WGA---LLNACRIHRNDEMFDRIRQDLVNKKGV-SVGTFALMSNTFA-GADRWEDTNKIRDEIRR 442 (461)
Q Consensus 383 ~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 442 (461)
|.+ .+..+.+.|-+..|.++.+-+...+|. |+.....+++.|+ ++++++--+++.+....
T Consensus 103 flal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 103 FLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 444 345578999999999999999999988 8888888888775 67888888888887654
No 473
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=39.41 E-value=1.7e+02 Score=25.80 Aligned_cols=52 Identities=15% Similarity=0.133 Sum_probs=29.2
Q ss_pred HHHHHHHcCChhhHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038303 149 ILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202 (461)
Q Consensus 149 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 202 (461)
++..+.+..++.+....+..+. ....-...+..+...|++.+|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444444444444444444442 233344455666777788888777777655
No 474
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=38.46 E-value=1.5e+02 Score=27.89 Aligned_cols=16 Identities=0% Similarity=-0.101 Sum_probs=12.1
Q ss_pred HhcCCHHHHHHHHhhC
Q 038303 56 VTVKDIFSAHQIFNSV 71 (461)
Q Consensus 56 ~~~~~~~~a~~~~~~~ 71 (461)
++.|..+-.+-+++..
T Consensus 50 aRnGH~~vVeyLle~~ 65 (615)
T KOG0508|consen 50 ARNGHADVVEYLLEHC 65 (615)
T ss_pred hhcCcHHHHHHHHHHh
Confidence 4788888887777755
No 475
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=38.39 E-value=1.7e+02 Score=21.93 Aligned_cols=40 Identities=13% Similarity=0.103 Sum_probs=29.7
Q ss_pred HHHHHHHHhhcC--CCChhHHHHHHHHHhccCChhhHHHHHH
Q 038303 399 FDRIRQDLVNKK--GVSVGTFALMSNTFAGADRWEDTNKIRD 438 (461)
Q Consensus 399 a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 438 (461)
..++|..+.+.. ..-+..|...+..+-..|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566777777633 4456677888888888899999988875
No 476
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=38.39 E-value=69 Score=23.58 Aligned_cols=47 Identities=11% Similarity=0.060 Sum_probs=29.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCCh
Q 038303 282 TVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328 (461)
Q Consensus 282 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 328 (461)
.++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 45555566666777777777777777776766665566666655543
No 477
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=38.17 E-value=2.8e+02 Score=24.35 Aligned_cols=33 Identities=12% Similarity=0.195 Sum_probs=24.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhH
Q 038303 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATL 213 (461)
Q Consensus 180 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 213 (461)
+.+-.++.+++++|...|.+....| +..|..+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg-~s~dek~~ 41 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKG-VSKDEKTL 41 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCC-CChhhhhh
Confidence 4455677888999999999988887 66665543
No 478
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=37.69 E-value=3.1e+02 Score=24.80 Aligned_cols=31 Identities=32% Similarity=0.272 Sum_probs=16.8
Q ss_pred CCHhHHHHHHHHHHcCCChHHHHHHHHHhHh
Q 038303 310 PDDVTFIALISACSHGGLVDQGLILFKAMST 340 (461)
Q Consensus 310 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 340 (461)
||......++++.............++.+..
T Consensus 228 ~d~~~~~a~lRAls~~~~~~~~~~~i~~~L~ 258 (340)
T PF12069_consen 228 PDLELLSALLRALSSAPASDLVAILIDALLQ 258 (340)
T ss_pred CCHHHHHHHHHHHcCCCchhHHHHHHHHHhc
Confidence 5666666666666655555444443444444
No 479
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=37.65 E-value=83 Score=23.14 Aligned_cols=48 Identities=17% Similarity=0.043 Sum_probs=34.0
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCH
Q 038303 14 TQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDI 61 (461)
Q Consensus 14 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 61 (461)
..++..+...+..-.|.++++.+.+.+...+..|.=.-|+.+...|-+
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 456777777777888999999999888777766555556667666643
No 480
>PRK09462 fur ferric uptake regulator; Provisional
Probab=37.41 E-value=84 Score=24.27 Aligned_cols=59 Identities=8% Similarity=0.008 Sum_probs=0.0
Q ss_pred CCCCCCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcC
Q 038303 1 MLSCPSSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK 59 (461)
Q Consensus 1 M~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 59 (461)
|.++|++++..=...+=-.....+..-.|.++++.+.+.+...+..|.-..|..+...|
T Consensus 8 l~~~glr~T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 8 LKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred HHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
No 481
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=37.08 E-value=3.2e+02 Score=24.69 Aligned_cols=61 Identities=8% Similarity=0.037 Sum_probs=38.1
Q ss_pred HHHHHhcCCHHHHHHHHHHcc-------CCChhhH--HHHHHHHHhcCChHHHHHHHHHHHh-----cCCCCCHh
Q 038303 253 INMYVKCGDVGIAIQVFNMLA-------YKDKISW--STVISGLAMNGCGRQALQLFSLMII-----NAVFPDDV 313 (461)
Q Consensus 253 i~~~~~~g~~~~a~~~~~~~~-------~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~ 313 (461)
+...-+.++.++|.++++++. +|+.+.| ......+...|+..++.+++++..+ .|++|+..
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 333445557777777777665 3344443 3344556677888888888877766 56766553
No 482
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=36.87 E-value=1.8e+02 Score=21.77 Aligned_cols=42 Identities=2% Similarity=-0.105 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHH
Q 038303 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVH 233 (461)
Q Consensus 192 ~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~ 233 (461)
.+.++|..|..+|-..--+..|......+...|+++.|..++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~ 122 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIY 122 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666666522222333333333333334444444333
No 483
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=36.64 E-value=2.6e+02 Score=23.54 Aligned_cols=104 Identities=9% Similarity=-0.078 Sum_probs=0.0
Q ss_pred HHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-----hhhHHHHHHHHHHhcCChHHHHHHHHHHhh-
Q 038303 336 KAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-----EWSVWGALLNACRIHRNDEMFDRIRQDLVN- 408 (461)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 408 (461)
+...+...+.+...-++.|+--|.-...+.+|.+.|..- ++.| +...-..-|......|+.+.|++.......
T Consensus 14 ~w~~~~~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe 93 (228)
T KOG2659|consen 14 EWEEQLMKVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE 93 (228)
T ss_pred hhHHHHhccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH
Q ss_pred cCCCChhHHHHHHHH----HhccCChhhHHHHHHH
Q 038303 409 KKGVSVGTFALMSNT----FAGADRWEDTNKIRDE 439 (461)
Q Consensus 409 ~~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~ 439 (461)
....|...+..|... ..+.|..++|+++.+.
T Consensus 94 iLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 94 ILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
No 484
>PHA02791 ankyrin-like protein; Provisional
Probab=36.37 E-value=3e+02 Score=24.23 Aligned_cols=20 Identities=5% Similarity=0.159 Sum_probs=10.7
Q ss_pred HHHHHHHcCChhhHHHHHhc
Q 038303 149 ILDFYIRCGSLASCGYLFVK 168 (461)
Q Consensus 149 l~~~~~~~g~~~~a~~~~~~ 168 (461)
.+...+..|+.+-+..+++.
T Consensus 131 pL~~Aa~~g~~eivk~LL~~ 150 (284)
T PHA02791 131 SFYHAVMLNDVSIVSYFLSE 150 (284)
T ss_pred HHHHHHHcCCHHHHHHHHhc
Confidence 34444455666655555554
No 485
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=36.37 E-value=4.1e+02 Score=25.82 Aligned_cols=24 Identities=21% Similarity=0.513 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHcc
Q 038303 250 NAVINMYVKCGDVGIAIQVFNMLA 273 (461)
Q Consensus 250 ~~li~~~~~~g~~~~a~~~~~~~~ 273 (461)
..++.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 456777888888888888888876
No 486
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=36.32 E-value=1.9e+02 Score=22.04 Aligned_cols=75 Identities=11% Similarity=-0.042 Sum_probs=0.0
Q ss_pred CCCcchHHHHHHHHhhcCCHHHHHH---HHHhC----CCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHH
Q 038303 345 VPQMQHYACVVDMYGRAGLLEEAEA---FIREM----PIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTF 417 (461)
Q Consensus 345 ~~~~~~~~~l~~~~~~~g~~~~A~~---~~~~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 417 (461)
.++..+--.+..++.+..+.++..+ ++++. .-.-......-|.-++.+.++++.++++.+.+.+..|.|..+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Q ss_pred HH
Q 038303 418 AL 419 (461)
Q Consensus 418 ~~ 419 (461)
..
T Consensus 109 ~L 110 (149)
T KOG3364|consen 109 EL 110 (149)
T ss_pred HH
No 487
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.16 E-value=3.6e+02 Score=25.07 Aligned_cols=176 Identities=13% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHH
Q 038303 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINM 255 (461)
Q Consensus 176 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 255 (461)
.+.-+...|...|+++.|++.|.+..+-- ....-....+-.+|..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYC-----------------------------------Ts~khvInm~ln~i~V 196 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYC-----------------------------------TSAKHVINMCLNLILV 196 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhh-----------------------------------cchHHHHHHHHHHHHH
Q ss_pred HHhcCCHHHHHHHHHHccCC-----------ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------CCHhHHHHH
Q 038303 256 YVKCGDVGIAIQVFNMLAYK-----------DKISWSTVISGLAMNGCGRQALQLFSLMIINAVF------PDDVTFIAL 318 (461)
Q Consensus 256 ~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~------p~~~~~~~l 318 (461)
-.-.|+|.....+..+.... +......-.-+....+++..|...|-........ |...+....
T Consensus 197 SI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYgg 276 (466)
T KOG0686|consen 197 SIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGG 276 (466)
T ss_pred HHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHh
Q ss_pred HHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC--------CCCchhhHHHHHHH
Q 038303 319 ISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM--------PIEAEWSVWGALLN 388 (461)
Q Consensus 319 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~l~~ 388 (461)
+.+..--++-+--..+.+...-..-....+..+..+..-| .+++...+++++++ =+.|.+.+.-.+|+
T Consensus 277 LcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 277 LCALATFDRQDLKLNVIKNESFKLFLELEPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred hHhhccCCHHHHHHHHHcchhhhhHHhcChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
No 488
>PRK09169 hypothetical protein; Validated
Probab=35.85 E-value=8e+02 Score=29.01 Aligned_cols=431 Identities=11% Similarity=-0.001 Sum_probs=239.1
Q ss_pred cchHHHHHHHHHhhCCHHHHHHHHHHHHHh-----CCCccHHHHHHHHHHHHhcCCHHHHHHHHhhC-----------CC
Q 038303 10 HYTFTQALKACSLAHPHQKALEIHAHVIEY-----GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV-----------VF 73 (461)
Q Consensus 10 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-----------~~ 73 (461)
...+..+.+.+++.-+.....+.+.++... .-..+...+..++++++|-.+...+...-+.+ ..
T Consensus 122 ~~~~a~l~n~lsK~~d~~aC~~a~a~ia~q~~~~~~~~l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~a 201 (2316)
T PRK09169 122 LAQLAHLGNKLSKYPDRPACMAAIAWIAGQLLDALREALDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQA 201 (2316)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHh
Confidence 344566666666665544444443333321 11245666778888888766655544443333 12
Q ss_pred CCceeHHHHHHHHHcCCChHHHHHHHhcC----C------CCCCchhHHHHHHHhcccchhHHHHHHHHHHHh---h---
Q 038303 74 PDVVSWTTIISGLSKCGFHKEAIDMFCGI----D------VKPNANTLVSVLSACSSLVSHKLGKAIHAHSLR---N--- 137 (461)
Q Consensus 74 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~--- 137 (461)
-+......++++++|.-+-..+...-..+ . ...+......++++++|-.+-+.+...-..+-. .
T Consensus 202 l~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~ 281 (2316)
T PRK09169 202 MDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPG 281 (2316)
T ss_pred cchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChh
Confidence 34555667788888887765555444443 1 123566778889999887766554444333321 1
Q ss_pred -cCCCChhHHHHHHHHHHHcCChhhHHHHHhcCC-----------CCchhHHHHHHHHHHhcCChHHH----HHHHHHHH
Q 038303 138 -LNENNIILDNAILDFYIRCGSLASCGYLFVKMP-----------KRNVVSWTTMIGGYAERGFCKEA----VSVFQEME 201 (461)
Q Consensus 138 -~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----------~~~~~~~~~li~~~~~~~~~~~a----~~~~~~m~ 201 (461)
....+..-....+++++|..+-+.+......+- .-+..-....++++.|-.+.+.+ ..+-..+.
T Consensus 282 lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~ 361 (2316)
T PRK09169 282 LRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLA 361 (2316)
T ss_pred hhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 122345555667888888766544332222211 13455566677788887765543 23333332
Q ss_pred hcCC--CCCChhhHHHHHHHhhccchhh----hHHHHHHHHHhhcC--CCCcchHHHHHHHHHHhcCCHHHHHHHHHH--
Q 038303 202 KTKE--AEPNEATLVNVLSACSSISALS----FGKYVHSYISTRYD--LSVSNLVGNAVINMYVKCGDVGIAIQVFNM-- 271 (461)
Q Consensus 202 ~~~~--~~~~~~~~~~~l~~~~~~~~~~----~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-- 271 (461)
.... -.-+..-....++++++-++-+ .+..+...+....+ -..+..-..+.+.+++|-+.-+.+......
T Consensus 362 ~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA 441 (2316)
T PRK09169 362 RDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALA 441 (2316)
T ss_pred hChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 2110 2345666778888888876543 23444444444222 224566678888899988765544333222
Q ss_pred --cc-------CCChhhHHHHHHHHHhcCChHH----HHHHHHHHHhc---CCCCCHhHHHHHHHHHHcCCChHHHHHH-
Q 038303 272 --LA-------YKDKISWSTVISGLAMNGCGRQ----ALQLFSLMIIN---AVFPDDVTFIALISACSHGGLVDQGLIL- 334 (461)
Q Consensus 272 --~~-------~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~a~~~- 334 (461)
+. .-|..-....+.++.+-.+.+. +..+...+... .-.-+..-....+.++++.++.+.+...
T Consensus 442 ~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA 521 (2316)
T PRK09169 442 ARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAA 521 (2316)
T ss_pred HHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHH
Confidence 11 1155566777788887766442 23333333221 1123556678889999998877654333
Q ss_pred ---HHHhHhh--cCCCCCcchHHHHHHHHhhcCCHHH----HHHHHHhCC------CCchhhHHHHHHHHHHhcCChHH-
Q 038303 335 ---FKAMSTV--YEIVPQMQHYACVVDMYGRAGLLEE----AEAFIREMP------IEAEWSVWGALLNACRIHRNDEM- 398 (461)
Q Consensus 335 ---~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~------~~p~~~~~~~l~~~~~~~~~~~~- 398 (461)
...+..+ ..-..+..-....+.++.+-.+.+. |..+...+. ..-+..-+...+.++++.++...
T Consensus 522 ~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~ac 601 (2316)
T PRK09169 522 EALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDAC 601 (2316)
T ss_pred HHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhH
Confidence 2222221 1112345566777888888766332 233444331 12344566778888888776533
Q ss_pred ---HHHHHHHHhh----cCCCChhHHHHHHHHHhccCChhhHHHHHHHH
Q 038303 399 ---FDRIRQDLVN----KKGVSVGTFALMSNTFAGADRWEDTNKIRDEI 440 (461)
Q Consensus 399 ---a~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 440 (461)
+..+...+.+ ...-++.-+.+.++++++-.+.+........+
T Consensus 602 r~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aL 650 (2316)
T PRK09169 602 RAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEAL 650 (2316)
T ss_pred HHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 3334444332 23457788889999999988777655444443
No 489
>PF13934 ELYS: Nuclear pore complex assembly
Probab=35.63 E-value=2.7e+02 Score=23.49 Aligned_cols=69 Identities=22% Similarity=0.276 Sum_probs=30.4
Q ss_pred HHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCchhhHHHHHHHHH
Q 038303 318 LISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 390 (461)
Q Consensus 318 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 390 (461)
++.++...|+.+.|..+++...- ...+......++.. ...+.+.+|..+.+.....-....+..++..+
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~ 182 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHC 182 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHH
Confidence 45555555666666666654322 11111222222222 34456666666655553222223444444443
No 490
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=35.44 E-value=3.2e+02 Score=24.29 Aligned_cols=70 Identities=6% Similarity=-0.010 Sum_probs=37.5
Q ss_pred HHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHH----------hcCChHHHHHHH
Q 038303 231 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLA----------MNGCGRQALQLF 300 (461)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~a~~~~ 300 (461)
++++.+.+ .++.|.-..+.-+.-.+.+.=.+.+++.+|+.+...... |..++..|| -.|++..-++++
T Consensus 264 EL~~~L~~-~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-fd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 264 ELWRHLEE-KEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-FDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHh-cCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-hHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 44555554 566666666555555556666666666666665532211 344443333 246666666665
Q ss_pred HH
Q 038303 301 SL 302 (461)
Q Consensus 301 ~~ 302 (461)
+.
T Consensus 342 Q~ 343 (370)
T KOG4567|consen 342 QN 343 (370)
T ss_pred hc
Confidence 53
No 491
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=35.43 E-value=3.6e+02 Score=24.89 Aligned_cols=85 Identities=11% Similarity=0.056 Sum_probs=50.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHH------------HHHHHcCCChHHHHHHHHHhHhhcCCCCC---
Q 038303 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIAL------------ISACSHGGLVDQGLILFKAMSTVYEIVPQ--- 347 (461)
Q Consensus 283 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 347 (461)
+....-..|+.++|..++.+.. ..||.++ ++.|...+++-.|.-+-+++..++--.|+
T Consensus 137 L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~ 209 (439)
T KOG1498|consen 137 LAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQE 209 (439)
T ss_pred HHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHH
Confidence 4445556677777766665542 2222221 34566677777777666666553333444
Q ss_pred --cchHHHHHHHHhhcCCHHHHHHHHHhC
Q 038303 348 --MQHYACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 348 --~~~~~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
...|+.+++.....+.+-.+.+.++..
T Consensus 210 lKlkyY~lmI~l~lh~~~Yl~v~~~Yrai 238 (439)
T KOG1498|consen 210 LKLKYYELMIRLGLHDRAYLNVCRSYRAI 238 (439)
T ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 245667777776777777777777766
No 492
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.06 E-value=5.4e+02 Score=26.75 Aligned_cols=16 Identities=6% Similarity=0.222 Sum_probs=9.6
Q ss_pred CCcchHHHHHHHHhhc
Q 038303 346 PQMQHYACVVDMYGRA 361 (461)
Q Consensus 346 ~~~~~~~~l~~~~~~~ 361 (461)
-++..+|.++..|.+.
T Consensus 626 ~~~~ihn~ll~lya~~ 641 (911)
T KOG2034|consen 626 TNPAIHNSLLHLYAKH 641 (911)
T ss_pred cCHHHHHHHHHHhhcC
Confidence 4556666666666554
No 493
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=35.05 E-value=5.8e+02 Score=27.13 Aligned_cols=248 Identities=13% Similarity=0.032 Sum_probs=124.0
Q ss_pred CCChhHHHHHHHHHHHcCChhhHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 038303 140 ENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219 (461)
Q Consensus 140 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~ 219 (461)
.++..+....+..+.+.+..+....+...+..++...-...+.++.+.+........+..+.. .+|...-...+.+
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~----~~d~~VR~~A~~a 707 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLG----SPDPVVRAAALDV 707 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhc----CCCHHHHHHHHHH
Confidence 345555555566666655544333344444445555544555555444322112223333332 1455555555555
Q ss_pred hhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHH-HHH
Q 038303 220 CSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQ-ALQ 298 (461)
Q Consensus 220 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~ 298 (461)
+...+..+ ...+...+ -.++..+-...+.++.+.+..+ .+......++...-...+.++...+..+. +..
T Consensus 708 L~~~~~~~-~~~l~~~L-----~D~d~~VR~~Av~aL~~~~~~~---~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~ 778 (897)
T PRK13800 708 LRALRAGD-AALFAAAL-----GDPDHRVRIEAVRALVSVDDVE---SVAGAATDENREVRIAVAKGLATLGAGGAPAGD 778 (897)
T ss_pred HHhhccCC-HHHHHHHh-----cCCCHHHHHHHHHHHhcccCcH---HHHHHhcCCCHHHHHHHHHHHHHhccccchhHH
Confidence 55433211 11222221 2344455555666666554432 23344556666666666777777665443 344
Q ss_pred HHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCc
Q 038303 299 LFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEA 378 (461)
Q Consensus 299 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 378 (461)
.+..+.+ .+|...-...+.++...|..+.+...+..+.. .++..+-...+.++.+.+.. ++...+..+-..|
T Consensus 779 ~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~~-~a~~~L~~~L~D~ 850 (897)
T PRK13800 779 AVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAAD-VAVPALVEALTDP 850 (897)
T ss_pred HHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhcccc-chHHHHHHHhcCC
Confidence 4555543 34666667777777777776555444444433 24555555666777776653 4444444442345
Q ss_pred hhhHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 038303 379 EWSVWGALLNACRIHRNDEMFDRIRQDLVN 408 (461)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 408 (461)
+...=...+.++.+.+....+...+..+.+
T Consensus 851 ~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 851 HLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred CHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 555555555555554334455555555444
No 494
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.72 E-value=2.3e+02 Score=22.50 Aligned_cols=62 Identities=11% Similarity=0.002 Sum_probs=41.4
Q ss_pred HHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHH
Q 038303 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLE 365 (461)
Q Consensus 302 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 365 (461)
.+.+.|++++..-. .++..+...++.-.|.++++.+.+ .+..++..|...-+..+...|-..
T Consensus 16 ~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~-~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 16 LCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLRE-AEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHh-hCCCCCcchHHHHHHHHHHCCCEE
Confidence 34566777666543 455555556677789999999988 566667666666667777776543
No 495
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=34.52 E-value=87 Score=27.63 Aligned_cols=80 Identities=8% Similarity=-0.059 Sum_probs=49.9
Q ss_pred CCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHH-HHHHHhcCChHHHHHHHHHHhhcCCCChhHHHH
Q 038303 343 EIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGAL-LNACRIHRNDEMFDRIRQDLVNKKGVSVGTFAL 419 (461)
Q Consensus 343 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 419 (461)
.+..|+..|...+.--.+.|.+.+.-.++.+. ...| ++..|-.. -.-+...++++.+..+|....+.++.++..|..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 34456666666665555666666666676666 3333 33344321 122567788888888888888888877777665
Q ss_pred HHH
Q 038303 420 MSN 422 (461)
Q Consensus 420 l~~ 422 (461)
..+
T Consensus 182 yfr 184 (435)
T COG5191 182 YFR 184 (435)
T ss_pred HHH
Confidence 443
No 496
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=34.49 E-value=94 Score=29.20 Aligned_cols=100 Identities=12% Similarity=0.034 Sum_probs=47.2
Q ss_pred HHHHhcCCHHHHHHHHHHccC--CChh-hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-hHHHHHHHHHHcCCChH
Q 038303 254 NMYVKCGDVGIAIQVFNMLAY--KDKI-SWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD-VTFIALISACSHGGLVD 329 (461)
Q Consensus 254 ~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~ 329 (461)
..+.+.++++.|..++.++.+ ||.. .|..-..++.+.+++..|+.=..+.++.. |+. ..|..=..+|...+.+.
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHHH
Confidence 344455666666666665553 3222 23333355566666666666555555532 221 22222233344444555
Q ss_pred HHHHHHHHhHhhcCCCCCcchHHHHHHHH
Q 038303 330 QGLILFKAMSTVYEIVPQMQHYACVVDMY 358 (461)
Q Consensus 330 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 358 (461)
+|...|+.... +.|+..-....+.-|
T Consensus 90 ~A~~~l~~~~~---l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 90 KALLDLEKVKK---LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHhhh---cCcCcHHHHHHHHHH
Confidence 55555544433 445544444444433
No 497
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=34.44 E-value=1.1e+02 Score=19.63 Aligned_cols=50 Identities=14% Similarity=0.042 Sum_probs=34.6
Q ss_pred chhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhcc
Q 038303 378 AEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427 (461)
Q Consensus 378 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (461)
|....++.++..+++..-.+.++..+.++.+.+..+..+|..-++.+++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 45556777777777777788888888888776666667777666666554
No 498
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.30 E-value=1.4e+02 Score=21.18 Aligned_cols=45 Identities=9% Similarity=0.148 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHhh-cCCCChhHHHHHHHHHhccCChhhHHHHHHH
Q 038303 395 NDEMFDRIRQDLVN-KKGVSVGTFALMSNTFAGADRWEDTNKIRDE 439 (461)
Q Consensus 395 ~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 439 (461)
+....++.++++.. +.+..+.....|.-.|++.|+.+.|.+-|+.
T Consensus 52 Q~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 52 QTAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
No 499
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=34.24 E-value=2.7e+02 Score=25.24 Aligned_cols=27 Identities=15% Similarity=0.009 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 038303 382 VWGALLNACRIHRNDEMFDRIRQDLVN 408 (461)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 408 (461)
.|..+.......|.++..+.+|++++.
T Consensus 142 YWIC~Arl~~~~~~~e~vi~iyEeAi~ 168 (353)
T PF15297_consen 142 YWICLARLEPRTGPIEDVIAIYEEAIL 168 (353)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 455555555555555556666655554
No 500
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=34.13 E-value=1e+02 Score=22.25 Aligned_cols=35 Identities=11% Similarity=-0.016 Sum_probs=20.2
Q ss_pred CChHHHHHHHHHHH--hcCCCCCHhHHHHHHHHHHcC
Q 038303 291 GCGRQALQLFSLMI--INAVFPDDVTFIALISACSHG 325 (461)
Q Consensus 291 ~~~~~a~~~~~~m~--~~g~~p~~~~~~~ll~~~~~~ 325 (461)
|+++.....+-+.. ..+..+|...+...+.++...
T Consensus 61 Ge~~~i~~alLkq~~~~~~~~~d~e~l~~~~~lHl~r 97 (105)
T TIGR03184 61 GEYGDIYLALLKQRCVADGPELDDESLAKALNLHVHR 97 (105)
T ss_pred CchHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 56655555444433 455666777777666666543
Done!