Query 038303
Match_columns 461
No_of_seqs 589 out of 1681
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 16:28:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038303.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038303hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2E-41 6.8E-46 330.3 42.0 428 8-445 82-581 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.3E-38 7.7E-43 308.8 35.9 412 6-426 113-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 9.3E-29 3.2E-33 227.6 38.4 370 17-429 6-388 (388)
4 4g26_A Pentatricopeptide repea 100.0 2E-30 6.8E-35 242.6 22.5 183 175-360 27-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1E-27 3.4E-32 220.7 37.0 352 84-443 7-368 (388)
6 4g26_A Pentatricopeptide repea 100.0 1.9E-29 6.3E-34 236.1 20.5 200 191-393 7-223 (501)
7 2gw1_A Mitochondrial precursor 100.0 4.4E-25 1.5E-29 210.8 35.0 427 11-445 7-480 (514)
8 3fp2_A TPR repeat-containing p 99.9 7.5E-24 2.6E-28 203.5 35.9 424 11-446 26-494 (537)
9 2y4t_A DNAJ homolog subfamily 99.9 4.9E-23 1.7E-27 193.2 32.3 376 29-433 11-444 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 7E-23 2.4E-27 192.2 32.9 323 107-440 25-406 (450)
11 2gw1_A Mitochondrial precursor 99.9 2.2E-22 7.5E-27 192.1 33.4 407 7-420 36-489 (514)
12 3fp2_A TPR repeat-containing p 99.9 2.8E-21 9.5E-26 185.6 29.2 397 8-418 57-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 7.2E-20 2.5E-24 166.0 31.2 305 109-423 4-349 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 1.7E-19 5.7E-24 163.7 31.8 295 142-444 2-336 (359)
15 3hym_B Cell division cycle pro 99.9 4.3E-19 1.5E-23 159.0 30.1 285 142-431 21-322 (330)
16 1fch_A Peroxisomal targeting s 99.8 2.6E-19 8.9E-24 163.1 23.2 281 154-440 36-356 (368)
17 2ooe_A Cleavage stimulation fa 99.8 2.8E-17 9.6E-22 157.2 38.2 410 9-444 12-493 (530)
18 3hym_B Cell division cycle pro 99.8 6.9E-18 2.4E-22 151.1 29.9 285 106-397 20-322 (330)
19 1fch_A Peroxisomal targeting s 99.8 1.1E-18 3.7E-23 159.0 24.6 280 88-405 37-355 (368)
20 1b89_A Protein (clathrin heavy 99.8 7.6E-19 2.6E-23 157.0 22.4 219 22-273 15-234 (449)
21 1xi4_A Clathrin heavy chain; a 99.8 1.5E-16 5E-21 158.5 39.6 383 9-436 984-1377(1630)
22 2xm6_A Protein corresponding t 99.8 5.3E-17 1.8E-21 153.7 34.6 389 29-440 26-464 (490)
23 2ooe_A Cleavage stimulation fa 99.8 1.5E-16 5E-21 152.2 37.3 372 9-411 45-494 (530)
24 4eqf_A PEX5-related protein; a 99.8 1.2E-18 4.2E-23 158.5 20.3 261 173-439 64-352 (365)
25 4eqf_A PEX5-related protein; a 99.8 3E-18 1E-22 156.0 22.7 262 107-373 64-352 (365)
26 3mkr_A Coatomer subunit epsilo 99.8 1.6E-17 5.4E-22 145.3 25.6 268 153-436 9-287 (291)
27 4g1t_A Interferon-induced prot 99.8 2.7E-17 9.3E-22 155.1 27.2 383 44-454 50-470 (472)
28 2xm6_A Protein corresponding t 99.8 6E-16 2.1E-20 146.4 36.4 355 72-446 35-435 (490)
29 3cv0_A Peroxisome targeting si 99.8 2.3E-17 7.8E-22 147.5 23.1 258 176-440 23-312 (327)
30 1b89_A Protein (clathrin heavy 99.8 1.3E-16 4.4E-21 142.7 25.1 329 8-375 30-370 (449)
31 3cv0_A Peroxisome targeting si 99.8 8.9E-17 3E-21 143.7 24.2 258 9-271 20-311 (327)
32 4g1t_A Interferon-induced prot 99.8 4E-16 1.4E-20 147.1 28.0 381 9-421 50-471 (472)
33 1xi4_A Clathrin heavy chain; a 99.8 1.6E-14 5.5E-19 144.1 38.2 347 46-438 986-1340(1630)
34 3mkr_A Coatomer subunit epsilo 99.8 1.9E-16 6.6E-21 138.4 21.8 248 181-445 6-266 (291)
35 3spa_A Mtrpol, DNA-directed RN 99.7 1E-18 3.5E-23 168.6 7.7 165 242-407 123-308 (1134)
36 3spa_A Mtrpol, DNA-directed RN 99.7 4E-18 1.4E-22 164.5 8.5 147 277-428 127-286 (1134)
37 3e4b_A ALGK; tetratricopeptide 99.7 9.1E-15 3.1E-19 136.3 25.9 378 16-443 9-421 (452)
38 2pl2_A Hypothetical conserved 99.7 4.6E-15 1.6E-19 123.9 19.4 196 243-441 2-212 (217)
39 3uq3_A Heat shock protein STI1 99.7 5.3E-15 1.8E-19 127.2 20.2 220 175-444 6-237 (258)
40 3uq3_A Heat shock protein STI1 99.7 8E-15 2.7E-19 126.1 19.9 243 142-423 4-256 (258)
41 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.1E-14 3.8E-19 126.6 20.8 241 187-437 18-269 (275)
42 3u4t_A TPR repeat-containing p 99.6 5.6E-14 1.9E-18 121.9 23.8 244 178-427 7-268 (272)
43 2ho1_A Type 4 fimbrial biogene 99.6 1.6E-13 5.5E-18 117.5 22.5 198 246-445 37-240 (252)
44 2vq2_A PILW, putative fimbrial 99.6 2.9E-13 9.8E-18 113.6 22.6 197 246-444 8-212 (225)
45 3u4t_A TPR repeat-containing p 99.6 4.9E-13 1.7E-17 115.9 24.5 218 52-272 10-247 (272)
46 3e4b_A ALGK; tetratricopeptide 99.6 3.8E-13 1.3E-17 125.3 25.3 344 82-446 9-390 (452)
47 2q7f_A YRRB protein; TPR, prot 99.6 5.2E-14 1.8E-18 119.8 17.6 199 244-445 21-224 (243)
48 4e6h_A MRNA 3'-END-processing 99.6 2.1E-11 7.2E-16 117.6 37.1 400 8-414 64-575 (679)
49 2pl2_A Hypothetical conserved 99.6 1.3E-13 4.4E-18 115.1 19.2 191 142-374 4-211 (217)
50 2ho1_A Type 4 fimbrial biogene 99.6 7.4E-13 2.5E-17 113.4 24.4 205 174-418 37-247 (252)
51 1ouv_A Conserved hypothetical 99.6 1.3E-12 4.5E-17 113.3 26.0 224 173-445 5-253 (273)
52 2h6f_A Protein farnesyltransfe 99.6 5.3E-13 1.8E-17 120.6 23.5 246 174-426 97-365 (382)
53 2q7f_A YRRB protein; TPR, prot 99.6 1.2E-13 4.1E-18 117.6 18.2 212 173-425 22-238 (243)
54 3sf4_A G-protein-signaling mod 99.6 3.9E-14 1.3E-18 130.6 15.9 297 107-432 8-365 (406)
55 2vq2_A PILW, putative fimbrial 99.6 7.9E-13 2.7E-17 110.9 22.7 208 173-420 7-222 (225)
56 4a1s_A PINS, partner of inscut 99.6 5.7E-14 1.9E-18 129.8 16.6 262 180-443 54-372 (411)
57 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.5E-13 5.1E-18 119.4 18.1 118 118-237 15-138 (275)
58 3sf4_A G-protein-signaling mod 99.6 1.5E-13 5E-18 126.7 18.9 265 177-443 12-336 (406)
59 3ro2_A PINS homolog, G-protein 99.6 1.7E-13 5.7E-18 122.6 17.6 261 181-443 12-332 (338)
60 1ouv_A Conserved hypothetical 99.5 3.4E-12 1.2E-16 110.7 25.1 228 142-413 5-255 (273)
61 3vtx_A MAMA; tetratricopeptide 99.5 8.7E-13 3E-17 107.0 19.3 166 276-444 4-171 (184)
62 3ulq_A Response regulator aspa 99.5 1E-12 3.6E-17 120.1 21.8 195 248-443 145-368 (383)
63 4e6h_A MRNA 3'-END-processing 99.5 8.5E-11 2.9E-15 113.4 35.3 418 26-447 48-574 (679)
64 2h6f_A Protein farnesyltransfe 99.5 1.3E-12 4.3E-17 118.1 21.1 236 210-453 97-356 (382)
65 3ro2_A PINS homolog, G-protein 99.5 5.7E-13 1.9E-17 119.2 17.5 268 114-410 11-333 (338)
66 4abn_A Tetratricopeptide repea 99.5 2.4E-13 8.3E-18 127.5 15.4 192 244-439 100-317 (474)
67 4a1s_A PINS, partner of inscut 99.5 4.1E-13 1.4E-17 124.0 15.3 266 13-306 51-372 (411)
68 3ulq_A Response regulator aspa 99.5 7.9E-12 2.7E-16 114.2 22.5 228 181-408 110-367 (383)
69 3nf1_A KLC 1, kinesin light ch 99.5 3.2E-13 1.1E-17 119.5 11.9 241 173-443 26-307 (311)
70 2ond_A Cleavage stimulation fa 99.4 8E-11 2.7E-15 103.9 25.7 216 191-413 33-274 (308)
71 3q15_A PSP28, response regulat 99.4 1E-10 3.5E-15 106.5 26.3 163 279-442 184-364 (378)
72 3as5_A MAMA; tetratricopeptide 99.4 6.4E-12 2.2E-16 101.8 16.0 162 280-444 11-174 (186)
73 3q15_A PSP28, response regulat 99.4 3.1E-11 1.1E-15 110.0 22.0 305 103-408 5-364 (378)
74 3vtx_A MAMA; tetratricopeptide 99.4 1.4E-11 4.9E-16 99.8 17.6 167 245-414 4-175 (184)
75 3nf1_A KLC 1, kinesin light ch 99.4 2.2E-12 7.4E-17 114.1 12.7 240 142-411 26-309 (311)
76 1hz4_A MALT regulatory protein 99.4 4.3E-10 1.5E-14 102.2 28.2 156 149-304 20-201 (373)
77 2ond_A Cleavage stimulation fa 99.4 1.1E-10 3.7E-15 103.1 22.7 214 227-446 33-273 (308)
78 4abn_A Tetratricopeptide repea 99.4 9.1E-12 3.1E-16 116.8 15.9 197 44-272 101-318 (474)
79 4gyw_A UDP-N-acetylglucosamine 99.4 2.2E-11 7.4E-16 118.9 18.3 162 277-442 9-173 (723)
80 4i17_A Hypothetical protein; T 99.3 7.3E-11 2.5E-15 99.2 18.2 191 245-445 6-211 (228)
81 1hz4_A MALT regulatory protein 99.3 1.9E-10 6.6E-15 104.5 22.4 258 117-374 23-319 (373)
82 4i17_A Hypothetical protein; T 99.3 2.2E-10 7.6E-15 96.2 20.0 206 207-424 4-224 (228)
83 3edt_B KLC 2, kinesin light ch 99.3 4.9E-11 1.7E-15 103.6 14.2 197 246-442 43-280 (283)
84 3as5_A MAMA; tetratricopeptide 99.3 2E-10 6.8E-15 92.8 16.7 165 247-414 9-178 (186)
85 1qqe_A Vesicular transport pro 99.2 5.9E-10 2E-14 97.5 17.8 186 255-440 46-266 (292)
86 3mv2_B Coatomer subunit epsilo 99.2 9E-09 3.1E-13 88.3 22.3 244 150-417 20-290 (310)
87 2fo7_A Synthetic consensus TPR 99.2 9.7E-10 3.3E-14 83.4 14.5 128 315-444 4-133 (136)
88 3mv2_B Coatomer subunit epsilo 99.2 1.4E-08 4.9E-13 87.1 22.9 175 265-444 85-283 (310)
89 3edt_B KLC 2, kinesin light ch 99.2 1.4E-09 4.9E-14 94.3 16.8 163 247-409 86-281 (283)
90 4gyw_A UDP-N-acetylglucosamine 99.1 2.3E-09 8E-14 104.7 19.3 159 176-340 11-173 (723)
91 2yhc_A BAMD, UPF0169 lipoprote 99.1 6.1E-09 2.1E-13 87.1 18.9 185 247-448 5-218 (225)
92 3qky_A Outer membrane assembly 99.1 4.7E-09 1.6E-13 90.1 17.8 185 246-432 15-250 (261)
93 1qqe_A Vesicular transport pro 99.1 5.7E-09 1.9E-13 91.2 18.2 171 247-417 78-277 (292)
94 3qky_A Outer membrane assembly 99.1 7.1E-09 2.4E-13 89.0 17.4 170 275-445 13-226 (261)
95 2pzi_A Probable serine/threoni 99.1 1.4E-09 4.9E-14 106.5 13.7 169 257-429 402-583 (681)
96 2uy1_A Cleavage stimulation fa 99.0 4.6E-07 1.6E-11 84.8 29.4 203 191-408 196-412 (493)
97 2fo7_A Synthetic consensus TPR 99.0 7.4E-09 2.5E-13 78.4 14.5 130 279-411 3-134 (136)
98 3qou_A Protein YBBN; thioredox 99.0 8.6E-09 2.9E-13 89.7 16.3 176 263-442 103-283 (287)
99 4ga2_A E3 SUMO-protein ligase 99.0 9.5E-10 3.2E-14 85.5 8.2 141 285-429 5-149 (150)
100 3rjv_A Putative SEL1 repeat pr 99.0 4.5E-08 1.5E-12 80.9 18.3 173 265-446 5-200 (212)
101 2ifu_A Gamma-SNAP; membrane fu 99.0 2.8E-08 9.4E-13 87.5 17.1 219 187-435 4-253 (307)
102 2vsy_A XCC0866; transferase, g 99.0 7.9E-09 2.7E-13 99.5 14.6 160 259-421 2-169 (568)
103 2r5s_A Uncharacterized protein 98.9 1.1E-08 3.9E-13 81.8 12.2 158 281-442 10-172 (176)
104 2pzi_A Probable serine/threoni 98.9 1.5E-07 5E-12 92.4 21.1 169 221-395 402-583 (681)
105 3urz_A Uncharacterized protein 98.9 7E-08 2.4E-12 79.5 16.0 157 254-413 12-190 (208)
106 2ifu_A Gamma-SNAP; membrane fu 98.9 1.6E-08 5.6E-13 88.9 12.9 196 222-441 3-222 (307)
107 3urz_A Uncharacterized protein 98.9 2.2E-08 7.6E-13 82.5 12.4 180 14-213 8-193 (208)
108 2vsy_A XCC0866; transferase, g 98.9 4.1E-08 1.4E-12 94.5 15.9 147 223-374 2-154 (568)
109 2r5s_A Uncharacterized protein 98.9 6.5E-08 2.2E-12 77.3 14.4 153 148-305 11-172 (176)
110 2qfc_A PLCR protein; TPR, HTH, 98.9 2E-07 6.8E-12 81.4 18.7 163 279-441 77-264 (293)
111 3u3w_A Transcriptional activat 98.9 7.9E-07 2.7E-11 77.5 22.5 161 282-442 80-265 (293)
112 4ga2_A E3 SUMO-protein ligase 98.9 5.1E-09 1.7E-13 81.3 7.4 124 319-444 4-130 (150)
113 2yhc_A BAMD, UPF0169 lipoprote 98.9 2.8E-07 9.7E-12 76.9 18.6 184 210-414 4-218 (225)
114 3qou_A Protein YBBN; thioredox 98.8 1.2E-07 4.3E-12 82.3 16.8 154 146-304 120-282 (287)
115 3dra_A Protein farnesyltransfe 98.8 4.4E-06 1.5E-10 72.4 26.0 159 260-421 124-300 (306)
116 2uy1_A Cleavage stimulation fa 98.8 4.5E-07 1.5E-11 84.9 21.1 369 22-442 6-412 (493)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.8 6E-08 2.1E-12 80.2 13.5 129 279-413 8-154 (213)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.8 2.8E-07 9.6E-12 76.1 17.6 129 249-380 9-154 (213)
119 3dra_A Protein farnesyltransfe 98.8 1.9E-06 6.5E-11 74.7 23.2 191 249-442 70-286 (306)
120 3gyz_A Chaperone protein IPGC; 98.8 2.8E-08 9.7E-13 76.7 10.0 97 348-444 36-134 (151)
121 4gco_A Protein STI-1; structur 98.8 7.8E-08 2.7E-12 71.9 11.7 108 314-423 15-124 (126)
122 1a17_A Serine/threonine protei 98.8 1.3E-07 4.4E-12 74.5 13.7 128 313-442 14-145 (166)
123 3rjv_A Putative SEL1 repeat pr 98.8 3.4E-07 1.2E-11 75.5 16.7 156 174-340 18-196 (212)
124 2qfc_A PLCR protein; TPR, HTH, 98.7 1.1E-06 3.7E-11 76.7 19.0 160 249-408 78-265 (293)
125 2c2l_A CHIP, carboxy terminus 98.7 8.8E-08 3E-12 83.0 11.6 191 246-443 4-199 (281)
126 4gco_A Protein STI-1; structur 98.7 1.5E-07 5.1E-12 70.4 11.1 97 348-444 13-111 (126)
127 1na0_A Designed protein CTPR3; 98.7 2.5E-07 8.6E-12 68.7 12.5 113 313-427 10-124 (125)
128 2vgx_A Chaperone SYCD; alterna 98.7 3.9E-08 1.3E-12 76.0 8.0 92 351-442 24-117 (148)
129 3u3w_A Transcriptional activat 98.7 4E-06 1.4E-10 73.0 21.7 125 179-303 80-222 (293)
130 2lni_A Stress-induced-phosphop 98.7 2.3E-07 7.9E-12 69.9 12.1 114 313-428 17-132 (133)
131 2vyi_A SGTA protein; chaperone 98.7 2.1E-07 7.3E-12 69.8 11.8 117 312-430 12-130 (131)
132 2e2e_A Formate-dependent nitri 98.7 1.3E-07 4.3E-12 75.7 10.2 124 288-414 21-149 (177)
133 2fbn_A 70 kDa peptidylprolyl i 98.7 2.9E-08 9.9E-13 81.1 6.4 97 349-445 89-188 (198)
134 1p5q_A FKBP52, FK506-binding p 98.7 2.3E-07 8E-12 82.5 12.4 94 348-441 196-292 (336)
135 2kck_A TPR repeat; tetratricop 98.7 2.9E-07 9.8E-12 66.9 10.9 100 347-446 5-109 (112)
136 4f3v_A ESX-1 secretion system 98.6 6.2E-07 2.1E-11 75.9 13.2 184 258-446 18-240 (282)
137 3upv_A Heat shock protein STI1 98.6 4.1E-07 1.4E-11 68.0 10.2 93 351-443 7-101 (126)
138 2xcb_A PCRH, regulatory protei 98.6 2.9E-07 9.8E-12 70.5 9.5 89 354-442 24-114 (142)
139 3gw4_A Uncharacterized protein 98.6 1.1E-06 3.8E-11 71.7 13.5 151 258-408 4-175 (203)
140 1a17_A Serine/threonine protei 98.6 2.1E-06 7.1E-11 67.4 14.4 127 279-408 15-145 (166)
141 3gyz_A Chaperone protein IPGC; 98.6 1.4E-06 4.9E-11 67.1 12.8 100 313-414 37-138 (151)
142 1elw_A TPR1-domain of HOP; HOP 98.5 2E-06 6.7E-11 63.0 12.6 108 314-423 6-115 (118)
143 4f3v_A ESX-1 secretion system 98.5 3.7E-07 1.3E-11 77.3 9.5 183 22-209 18-240 (282)
144 3gw4_A Uncharacterized protein 98.5 8.6E-07 2.9E-11 72.4 11.5 47 156-202 5-54 (203)
145 1hxi_A PEX5, peroxisome target 98.5 5.6E-07 1.9E-11 66.6 9.2 96 349-444 18-115 (121)
146 3q49_B STIP1 homology and U bo 98.5 1.2E-06 4.1E-11 66.4 11.3 95 348-442 9-105 (137)
147 1na0_A Designed protein CTPR3; 98.5 1.1E-06 3.8E-11 65.1 10.9 98 348-445 9-108 (125)
148 2c2l_A CHIP, carboxy terminus 98.5 4.6E-07 1.6E-11 78.4 9.7 93 9-102 3-98 (281)
149 2lni_A Stress-induced-phosphop 98.5 1.3E-06 4.3E-11 65.7 11.2 100 345-444 13-114 (133)
150 3q7a_A Farnesyltransferase alp 98.5 0.00012 4E-09 64.2 24.7 173 183-363 63-257 (349)
151 3sz7_A HSC70 cochaperone (SGT) 98.5 8.7E-07 3E-11 69.7 10.2 109 311-421 10-120 (164)
152 2e2e_A Formate-dependent nitri 98.5 8.2E-07 2.8E-11 70.9 10.2 117 325-443 23-144 (177)
153 2vgx_A Chaperone SYCD; alterna 98.5 3.5E-07 1.2E-11 70.6 7.7 102 313-416 22-125 (148)
154 1elw_A TPR1-domain of HOP; HOP 98.5 1.5E-06 5E-11 63.7 10.5 98 348-445 4-103 (118)
155 2dba_A Smooth muscle cell asso 98.5 2.4E-06 8.1E-11 65.6 11.9 110 312-424 28-143 (148)
156 4b4t_Q 26S proteasome regulato 98.4 9.6E-06 3.3E-10 75.0 17.8 163 280-442 58-244 (434)
157 3upv_A Heat shock protein STI1 98.4 2.4E-06 8.3E-11 63.7 11.3 108 314-423 6-121 (126)
158 3q7a_A Farnesyltransferase alp 98.4 3.8E-05 1.3E-09 67.3 19.9 213 226-443 70-331 (349)
159 4gcn_A Protein STI-1; structur 98.4 1E-06 3.5E-11 65.9 8.6 89 354-442 14-111 (127)
160 2dba_A Smooth muscle cell asso 98.4 7.8E-06 2.7E-10 62.7 13.9 96 348-443 28-128 (148)
161 2xcb_A PCRH, regulatory protei 98.4 1.9E-06 6.5E-11 65.9 10.0 100 315-416 21-122 (142)
162 3sz7_A HSC70 cochaperone (SGT) 98.4 7.7E-06 2.6E-10 64.2 13.8 96 276-374 10-105 (164)
163 2vyi_A SGTA protein; chaperone 98.4 1.9E-06 6.6E-11 64.4 9.8 99 347-445 11-111 (131)
164 2xev_A YBGF; tetratricopeptide 98.4 2.3E-06 7.7E-11 64.0 10.1 97 318-416 8-112 (129)
165 1elr_A TPR2A-domain of HOP; HO 98.4 2.9E-06 1E-10 63.4 9.9 108 314-424 6-122 (131)
166 3q49_B STIP1 homology and U bo 98.3 4.1E-06 1.4E-10 63.4 10.4 98 312-411 9-108 (137)
167 4b4t_Q 26S proteasome regulato 98.3 1.3E-05 4.3E-10 74.2 15.7 96 279-374 137-242 (434)
168 2hr2_A Hypothetical protein; a 98.3 3E-06 1E-10 64.7 9.1 62 382-443 59-131 (159)
169 1elr_A TPR2A-domain of HOP; HO 98.3 2.5E-06 8.7E-11 63.7 8.7 98 348-445 4-110 (131)
170 4gcn_A Protein STI-1; structur 98.3 4.6E-06 1.6E-10 62.2 10.0 99 111-213 11-119 (127)
171 3ro3_A PINS homolog, G-protein 98.3 5.6E-06 1.9E-10 64.5 11.0 129 315-443 12-158 (164)
172 3dss_A Geranylgeranyl transfer 98.3 0.00024 8.2E-09 62.0 22.0 92 227-321 91-188 (331)
173 3k9i_A BH0479 protein; putativ 98.3 1.4E-06 4.8E-11 64.0 6.9 61 382-442 29-89 (117)
174 1p5q_A FKBP52, FK506-binding p 98.3 1E-05 3.4E-10 71.9 13.7 128 278-407 148-292 (336)
175 2kck_A TPR repeat; tetratricop 98.3 6.2E-06 2.1E-10 59.6 10.3 97 314-412 8-109 (112)
176 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 6.1E-06 2.1E-10 76.7 12.6 94 348-441 317-413 (457)
177 1wao_1 Serine/threonine protei 98.3 2.1E-06 7.2E-11 80.2 8.9 116 321-438 15-134 (477)
178 2fbn_A 70 kDa peptidylprolyl i 98.3 2.5E-06 8.6E-11 69.4 8.3 168 149-339 10-184 (198)
179 3rkv_A Putative peptidylprolyl 98.2 6.2E-06 2.1E-10 64.6 9.6 102 313-414 12-131 (162)
180 2xev_A YBGF; tetratricopeptide 98.2 2.2E-05 7.5E-10 58.5 12.1 88 284-374 9-102 (129)
181 1wao_1 Serine/threonine protei 98.2 1E-05 3.5E-10 75.5 12.0 118 252-372 12-134 (477)
182 3ro3_A PINS homolog, G-protein 98.2 1.3E-05 4.5E-10 62.3 10.9 129 280-408 12-157 (164)
183 2if4_A ATFKBP42; FKBP-like, al 98.2 4.9E-06 1.7E-10 74.0 8.5 149 277-445 179-330 (338)
184 3dss_A Geranylgeranyl transfer 98.2 0.00066 2.3E-08 59.2 21.6 179 262-443 90-304 (331)
185 3n71_A Histone lysine methyltr 98.1 8.4E-06 2.9E-10 75.7 9.7 126 321-446 318-467 (490)
186 3k9i_A BH0479 protein; putativ 98.1 3.9E-06 1.3E-10 61.6 6.0 89 326-415 4-96 (117)
187 1ihg_A Cyclophilin 40; ppiase 98.1 1.7E-05 5.7E-10 71.4 11.3 90 347-436 272-363 (370)
188 1hxi_A PEX5, peroxisome target 98.1 1.6E-05 5.4E-10 58.7 9.1 93 318-412 23-117 (121)
189 3rkv_A Putative peptidylprolyl 98.1 1.6E-05 5.5E-10 62.2 9.3 101 278-380 12-130 (162)
190 2if4_A ATFKBP42; FKBP-like, al 98.0 2E-05 7E-10 70.0 9.8 151 246-413 179-332 (338)
191 2l6j_A TPR repeat-containing p 98.0 3.2E-06 1.1E-10 61.2 3.4 92 347-438 3-102 (111)
192 1dce_A Protein (RAB geranylger 98.0 0.0005 1.7E-08 65.4 19.3 172 258-432 40-244 (567)
193 2kat_A Uncharacterized protein 97.9 5.4E-05 1.8E-09 55.1 8.2 79 330-410 3-83 (115)
194 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00019 6.4E-09 66.7 13.3 121 278-400 269-405 (457)
195 3ma5_A Tetratricopeptide repea 97.9 7.1E-05 2.4E-09 52.9 8.2 64 379-442 6-69 (100)
196 1na3_A Designed protein CTPR2; 97.8 9.1E-05 3.1E-09 51.0 8.1 79 349-427 10-90 (91)
197 1klx_A Cysteine rich protein B 97.8 0.00029 9.8E-09 53.2 10.9 111 327-445 10-128 (138)
198 1ihg_A Cyclophilin 40; ppiase 97.8 0.00017 5.8E-09 64.8 11.2 91 249-340 226-335 (370)
199 3n71_A Histone lysine methyltr 97.7 0.00025 8.4E-09 65.9 11.8 123 286-408 318-463 (490)
200 2hr2_A Hypothetical protein; a 97.7 8E-05 2.7E-09 56.8 6.9 67 350-416 59-138 (159)
201 1dce_A Protein (RAB geranylger 97.7 0.00095 3.2E-08 63.6 15.2 151 291-445 43-223 (567)
202 1wy6_A Hypothetical protein ST 97.7 0.0074 2.5E-07 43.6 15.5 141 287-446 17-157 (172)
203 1zu2_A Mitochondrial import re 97.6 6.5E-05 2.2E-09 57.2 5.1 84 361-444 15-121 (158)
204 2l6j_A TPR repeat-containing p 97.6 0.0003 1E-08 50.5 8.6 68 378-445 2-69 (111)
205 2kat_A Uncharacterized protein 97.6 0.00023 8E-09 51.6 8.0 77 295-374 3-79 (115)
206 3bee_A Putative YFRE protein; 97.5 0.00056 1.9E-08 47.3 8.6 69 378-446 4-75 (93)
207 1na3_A Designed protein CTPR2; 97.5 0.00063 2.2E-08 46.6 8.5 66 379-444 8-73 (91)
208 3lvg_A Clathrin heavy chain 1; 97.4 5.6E-05 1.9E-09 67.6 2.7 236 45-298 54-325 (624)
209 3qww_A SET and MYND domain-con 97.4 0.00039 1.3E-08 63.4 8.4 82 361-442 311-410 (433)
210 1zu2_A Mitochondrial import re 97.4 0.00027 9.1E-09 53.8 5.7 96 120-219 14-133 (158)
211 1klx_A Cysteine rich protein B 97.3 0.0023 7.9E-08 48.1 10.7 111 291-410 9-127 (138)
212 3ma5_A Tetratricopeptide repea 97.3 0.0011 3.6E-08 46.7 7.8 63 277-340 7-69 (100)
213 3lvg_A Clathrin heavy chain 1; 97.3 1.1E-05 3.6E-10 72.2 -3.5 213 75-302 53-287 (624)
214 3qwp_A SET and MYND domain-con 97.3 0.00099 3.4E-08 60.9 9.1 90 319-408 294-399 (429)
215 2kc7_A BFR218_protein; tetratr 97.2 0.00048 1.6E-08 48.3 5.4 79 354-440 6-87 (99)
216 3mkq_A Coatomer beta'-subunit; 97.2 0.037 1.3E-06 55.5 20.3 101 256-374 662-762 (814)
217 2kc7_A BFR218_protein; tetratr 97.1 0.0017 5.8E-08 45.3 7.1 60 387-446 7-67 (99)
218 3qww_A SET and MYND domain-con 97.0 0.0028 9.4E-08 57.9 9.5 85 324-408 310-410 (433)
219 3mkq_A Coatomer beta'-subunit; 97.0 0.053 1.8E-06 54.3 19.4 101 85-202 608-709 (814)
220 3ly7_A Transcriptional activat 96.9 0.026 9.1E-07 49.5 14.3 137 275-413 192-343 (372)
221 3qwp_A SET and MYND domain-con 96.9 0.016 5.6E-07 52.8 13.7 87 355-441 294-398 (429)
222 3ly7_A Transcriptional activat 96.9 0.12 4E-06 45.5 18.2 73 275-352 275-347 (372)
223 1qsa_A Protein (soluble lytic 96.7 0.44 1.5E-05 45.5 27.9 113 292-408 229-347 (618)
224 3u64_A Protein TP_0956; tetrat 96.5 0.012 4.1E-07 49.4 9.0 87 364-450 179-276 (301)
225 3mkq_B Coatomer subunit alpha; 96.4 0.21 7.3E-06 38.5 14.7 128 255-406 14-141 (177)
226 2v5f_A Prolyl 4-hydroxylase su 96.4 0.031 1.1E-06 39.3 9.3 71 350-420 7-86 (104)
227 1pc2_A Mitochondria fission pr 96.3 0.017 5.7E-07 43.5 7.6 91 326-418 12-109 (152)
228 1pc2_A Mitochondria fission pr 96.2 0.039 1.3E-06 41.5 9.1 86 292-380 13-104 (152)
229 4h7y_A Dual specificity protei 96.1 0.05 1.7E-06 40.4 9.2 110 311-422 12-136 (161)
230 4b4t_P 26S proteasome regulato 96.1 0.85 2.9E-05 41.7 20.6 252 23-275 29-324 (445)
231 3bee_A Putative YFRE protein; 95.9 0.039 1.3E-06 37.8 7.5 67 346-412 4-75 (93)
232 3mkq_B Coatomer subunit alpha; 95.7 0.5 1.7E-05 36.5 14.2 130 53-201 13-142 (177)
233 4ady_A RPN2, 26S proteasome re 95.7 2 6.8E-05 42.9 25.8 254 183-442 383-657 (963)
234 2v5f_A Prolyl 4-hydroxylase su 95.5 0.078 2.7E-06 37.2 8.2 65 380-444 5-76 (104)
235 1wy6_A Hypothetical protein ST 95.4 0.5 1.7E-05 34.4 12.6 65 175-242 92-156 (172)
236 4gns_B Protein CSD3, chitin bi 95.2 0.12 4.1E-06 50.3 10.6 51 390-440 347-397 (754)
237 1nzn_A CGI-135 protein, fissio 95.1 0.34 1.2E-05 35.0 10.2 89 328-418 17-112 (126)
238 4b4t_P 26S proteasome regulato 95.1 1.9 6.5E-05 39.4 17.8 94 281-374 141-244 (445)
239 3u64_A Protein TP_0956; tetrat 94.7 1.7 5.8E-05 36.7 17.2 111 259-374 134-266 (301)
240 4h7y_A Dual specificity protei 94.3 0.72 2.5E-05 34.3 10.3 47 326-374 74-120 (161)
241 2ff4_A Probable regulatory pro 94.1 0.19 6.3E-06 45.2 8.7 68 384-451 175-247 (388)
242 3ffl_A Anaphase-promoting comp 93.2 0.86 3E-05 34.6 9.3 28 349-376 123-150 (167)
243 1nzn_A CGI-135 protein, fissio 93.1 1.7 5.8E-05 31.3 10.4 86 291-379 15-106 (126)
244 1v54_E Cytochrome C oxidase po 93.0 0.95 3.3E-05 30.8 8.3 63 292-356 25-87 (109)
245 4fhn_B Nucleoporin NUP120; pro 92.9 2.8 9.5E-05 43.7 16.1 158 50-225 817-986 (1139)
246 4fhn_B Nucleoporin NUP120; pro 92.5 8.4 0.00029 40.2 18.9 22 251-272 847-868 (1139)
247 2wpv_A GET4, UPF0363 protein Y 92.5 4.7 0.00016 34.5 18.3 152 25-187 12-178 (312)
248 1qsa_A Protein (soluble lytic 92.2 8.3 0.00028 36.8 31.6 242 189-448 229-484 (618)
249 2y69_E Cytochrome C oxidase su 90.5 2.6 8.8E-05 30.5 8.6 63 292-356 68-130 (152)
250 3ffl_A Anaphase-promoting comp 90.3 2.1 7.3E-05 32.5 8.7 122 307-440 13-148 (167)
251 4ady_A RPN2, 26S proteasome re 90.1 17 0.00057 36.5 32.9 251 152-408 383-657 (963)
252 1v54_E Cytochrome C oxidase po 90.0 3.3 0.00011 28.3 8.4 48 375-422 40-87 (109)
253 3lpz_A GET4 (YOR164C homolog); 90.0 8.9 0.0003 33.1 20.3 152 26-188 12-181 (336)
254 4gns_B Protein CSD3, chitin bi 88.7 11 0.00037 36.9 14.5 54 116-170 345-398 (754)
255 1zbp_A Hypothetical protein VP 88.5 5.5 0.00019 33.0 10.6 54 286-340 6-59 (273)
256 2wpv_A GET4, UPF0363 protein Y 88.4 11 0.00038 32.2 19.0 169 145-340 35-216 (312)
257 3txn_A 26S proteasome regulato 88.2 14 0.00047 33.0 18.3 165 210-374 19-207 (394)
258 3lpz_A GET4 (YOR164C homolog); 88.1 12 0.00042 32.3 20.1 168 145-340 37-215 (336)
259 1y8m_A FIS1; mitochondria, unk 88.0 6.4 0.00022 29.0 10.3 73 345-417 36-114 (144)
260 2ff4_A Probable regulatory pro 87.9 7 0.00024 34.9 12.1 57 316-374 175-231 (388)
261 3eiq_C Programmed cell death p 87.4 14 0.00049 32.3 14.3 64 250-313 221-289 (358)
262 1zbp_A Hypothetical protein VP 87.1 3.2 0.00011 34.4 8.4 112 320-443 5-129 (273)
263 3esl_A Checkpoint serine/threo 86.9 8.1 0.00028 30.4 10.2 52 396-447 95-148 (202)
264 2y69_E Cytochrome C oxidase su 85.1 8 0.00027 28.1 8.4 51 373-423 81-131 (152)
265 1wdy_A 2-5A-dependent ribonucl 85.0 10 0.00034 31.6 11.3 53 15-71 7-62 (285)
266 4b4t_R RPN7, 26S proteasome re 83.8 7.4 0.00025 35.3 10.2 60 280-339 134-195 (429)
267 1wdy_A 2-5A-dependent ribonucl 82.9 19 0.00065 29.9 12.8 115 50-171 7-130 (285)
268 3o48_A Mitochondria fission 1 82.6 12 0.0004 27.2 10.0 29 386-414 84-112 (134)
269 3ltm_A Alpha-REP4; protein eng 82.4 17 0.00057 28.8 19.8 47 142-188 32-78 (211)
270 4a1g_A Mitotic checkpoint seri 81.2 15 0.00051 27.5 9.6 50 399-448 84-135 (152)
271 4b4t_R RPN7, 26S proteasome re 81.1 25 0.00086 31.8 12.7 96 313-408 132-236 (429)
272 3txn_A 26S proteasome regulato 81.0 30 0.001 30.8 22.9 91 146-238 22-127 (394)
273 3ltm_A Alpha-REP4; protein eng 81.0 19 0.00064 28.5 21.2 48 245-292 94-141 (211)
274 1y8m_A FIS1; mitochondria, unk 80.7 15 0.0005 27.1 11.1 70 309-379 36-109 (144)
275 3ltj_A Alpharep-4; protein eng 80.0 20 0.00067 28.1 19.1 43 250-292 94-136 (201)
276 2zu6_B Programmed cell death p 79.8 8 0.00027 33.1 8.3 64 250-313 170-238 (307)
277 1n11_A Ankyrin; clathrin, BAND 78.9 32 0.0011 30.9 12.9 231 150-405 117-366 (437)
278 3o48_A Mitochondria fission 1 78.0 17 0.00059 26.3 9.5 74 307-381 35-112 (134)
279 2wvi_A Mitotic checkpoint seri 77.5 21 0.00072 27.1 9.3 49 399-447 79-129 (164)
280 2uwj_G Type III export protein 75.1 17 0.00058 24.7 8.2 85 226-316 22-106 (115)
281 2p58_C Putative type III secre 74.1 18 0.00062 24.6 8.8 85 226-316 23-107 (116)
282 2uwj_G Type III export protein 74.0 18 0.00062 24.6 9.6 86 122-213 20-105 (115)
283 2p58_C Putative type III secre 73.1 19 0.00066 24.5 10.0 79 122-204 21-99 (116)
284 3ltj_A Alpharep-4; protein eng 72.7 32 0.0011 26.8 21.8 153 142-305 27-179 (201)
285 1k1a_A B-cell lymphoma 3-encod 72.5 35 0.0012 27.3 10.5 147 17-169 13-173 (241)
286 3b7b_A Euchromatic histone-lys 71.7 31 0.001 27.7 9.8 207 16-238 14-235 (237)
287 3kea_A K1L; tropism, ANK repea 69.8 22 0.00076 29.8 8.7 143 51-199 34-183 (285)
288 1n11_A Ankyrin; clathrin, BAND 65.4 53 0.0018 29.5 10.9 336 82-449 17-372 (437)
289 3kea_A K1L; tropism, ANK repea 65.0 41 0.0014 28.2 9.4 76 187-271 9-84 (285)
290 2d2s_A Exocyst complex compone 64.5 28 0.00096 28.3 7.7 19 84-102 26-44 (235)
291 4aez_C MAD3, mitotic spindle c 64.2 31 0.0011 27.7 7.7 28 382-409 152-179 (223)
292 4gq2_M Nucleoporin NUP120; bet 63.8 80 0.0027 32.1 12.6 86 317-408 815-925 (950)
293 2zu6_B Programmed cell death p 59.9 81 0.0028 26.9 12.9 26 250-275 7-32 (307)
294 4b4t_S RPN3, 26S proteasome re 58.6 1.2E+02 0.0039 28.2 13.9 179 246-445 231-431 (523)
295 1oai_A Nuclear RNA export fact 58.5 8.5 0.00029 23.3 2.7 25 187-211 33-57 (59)
296 2ion_A PDCD4, programmed cell 58.1 42 0.0014 25.1 7.1 62 250-311 13-79 (152)
297 2nsz_A Programmed cell death p 57.8 50 0.0017 23.8 8.5 63 250-312 11-78 (129)
298 2qx5_A Nucleoporin NIC96; mRNA 56.8 1.4E+02 0.0049 28.7 18.8 16 425-440 549-564 (661)
299 1bd8_A P19INK4D CDK4/6 inhibit 56.6 25 0.00085 25.9 6.0 17 152-168 107-123 (156)
300 4b4t_S RPN3, 26S proteasome re 56.3 64 0.0022 29.8 9.3 61 143-203 231-299 (523)
301 3eu9_A Huntingtin-interacting 54.2 47 0.0016 26.4 7.8 50 19-72 15-66 (240)
302 3bqo_A Telomeric repeat-bindin 53.9 77 0.0026 24.8 9.4 58 364-421 94-158 (211)
303 2nsz_A Programmed cell death p 53.3 18 0.00061 26.2 4.3 23 80-102 11-33 (129)
304 3esl_A Checkpoint serine/threo 53.0 82 0.0028 24.8 9.7 16 189-204 94-109 (202)
305 4gq2_M Nucleoporin NUP120; bet 52.3 1.6E+02 0.0056 29.9 12.6 125 51-188 816-950 (950)
306 3ljn_A Hypothetical protein; a 52.0 87 0.003 27.1 9.7 51 151-201 58-108 (364)
307 1oyz_A Hypothetical protein YI 49.9 1.1E+02 0.0037 25.3 25.3 46 244-289 140-185 (280)
308 4g8k_A 2-5A-dependent ribonucl 49.7 1.2E+02 0.0042 25.8 14.9 53 15-71 27-82 (337)
309 2fe3_A Peroxide operon regulat 49.4 66 0.0023 23.6 7.1 59 303-363 13-71 (145)
310 3hra_A Ankyrin repeat family p 48.1 63 0.0022 24.8 7.4 75 255-335 11-92 (201)
311 2ion_A PDCD4, programmed cell 48.0 23 0.00079 26.5 4.3 23 80-102 13-35 (152)
312 3hra_A Ankyrin repeat family p 47.0 83 0.0028 24.1 8.0 16 153-168 113-128 (201)
313 2d2s_A Exocyst complex compone 47.0 1.1E+02 0.0039 24.7 8.8 23 318-340 24-46 (235)
314 3eu9_A Huntingtin-interacting 46.5 1.1E+02 0.0036 24.2 9.2 48 54-102 15-65 (240)
315 4ets_A Ferric uptake regulatio 44.5 79 0.0027 23.8 6.9 58 304-363 25-84 (162)
316 2qx5_A Nucleoporin NIC96; mRNA 43.8 2.3E+02 0.0079 27.3 17.9 25 13-37 155-179 (661)
317 2xig_A Ferric uptake regulatio 43.3 96 0.0033 22.9 7.2 37 325-362 39-75 (150)
318 4a1g_A Mitotic checkpoint seri 43.1 1E+02 0.0035 23.0 9.0 24 286-309 110-133 (152)
319 2fu4_A Ferric uptake regulatio 43.0 23 0.00078 22.9 3.3 45 15-59 21-66 (83)
320 3ygs_P Procaspase 9; apoptosis 40.4 50 0.0017 22.3 4.7 37 260-296 51-87 (97)
321 3ljn_A Hypothetical protein; a 38.0 1.3E+02 0.0046 25.9 8.6 16 358-373 180-195 (364)
322 3mv2_A Coatomer subunit alpha; 37.5 2E+02 0.0067 24.7 11.7 126 287-444 124-257 (325)
323 2rfa_A Transient receptor pote 36.5 1.5E+02 0.0053 23.2 8.4 18 53-70 8-25 (232)
324 2rfa_A Transient receptor pote 36.0 1.1E+02 0.0037 24.2 7.1 176 17-202 7-222 (232)
325 3bge_A Predicted ATPase; struc 36.0 1.6E+02 0.0053 23.1 8.8 46 178-224 8-56 (201)
326 2crb_A Nuclear receptor bindin 35.0 57 0.0019 21.7 3.9 25 416-440 17-41 (97)
327 3jxi_A Vanilloid receptor-rela 34.2 98 0.0033 25.1 6.7 55 181-236 9-72 (260)
328 2o03_A Probable zinc uptake re 34.2 81 0.0028 22.6 5.3 46 283-328 16-61 (131)
329 3bu8_A Telomeric repeat-bindin 33.7 1.8E+02 0.0062 23.1 9.6 122 315-437 20-171 (235)
330 2o03_A Probable zinc uptake re 33.5 67 0.0023 23.1 4.8 46 15-60 15-60 (131)
331 1bpo_A Protein (clathrin); cla 33.2 2.8E+02 0.0097 25.3 10.7 27 144-170 362-388 (494)
332 4ets_A Ferric uptake regulatio 33.0 1.1E+02 0.0038 23.0 6.1 57 103-160 28-86 (162)
333 3aji_A 26S proteasome non-ATPa 32.6 1.8E+02 0.0061 22.8 8.4 144 17-168 10-161 (231)
334 3ygs_P Procaspase 9; apoptosis 32.2 57 0.0019 22.0 3.9 64 31-96 25-88 (97)
335 2r9g_A AAA ATPase, central reg 32.1 1.8E+02 0.0063 22.8 8.5 55 288-344 25-84 (204)
336 3mwm_A ZUR, putative metal upt 31.5 66 0.0023 23.4 4.5 47 14-60 17-63 (139)
337 4g8k_A 2-5A-dependent ribonucl 31.5 2.4E+02 0.0082 23.9 12.8 52 49-101 26-81 (337)
338 3mwm_A ZUR, putative metal upt 31.2 74 0.0025 23.2 4.7 46 283-328 19-64 (139)
339 1oyz_A Hypothetical protein YI 29.9 2.3E+02 0.0078 23.2 23.0 48 43-90 35-82 (280)
340 1k1a_A B-cell lymphoma 3-encod 29.8 2E+02 0.007 22.6 9.0 21 184-204 16-36 (241)
341 3ctd_A Putative ATPase, AAA fa 29.8 2.1E+02 0.0071 22.7 9.0 49 175-224 33-84 (213)
342 3eyy_A Putative iron uptake re 29.4 1.2E+02 0.004 22.3 5.6 35 328-363 33-67 (145)
343 2w57_A Ferric uptake regulatio 29.2 1.4E+02 0.005 21.9 6.1 59 303-363 8-67 (150)
344 3jxi_A Vanilloid receptor-rela 29.1 1.5E+02 0.0051 23.9 7.0 118 285-404 10-161 (260)
345 1ug3_A EIF4GI, eukaryotic prot 28.8 2.8E+02 0.0096 23.9 10.5 142 147-302 15-166 (339)
346 3bge_A Predicted ATPase; struc 28.8 2.1E+02 0.0072 22.4 6.8 40 288-327 18-57 (201)
347 2xig_A Ferric uptake regulatio 28.8 92 0.0032 23.0 5.0 58 34-92 16-77 (150)
348 1mzb_A Ferric uptake regulatio 28.1 86 0.0029 22.7 4.6 34 25-58 33-66 (136)
349 2p1h_A APAF-1, apoptotic prote 28.0 1.3E+02 0.0045 19.8 6.2 61 127-191 24-84 (94)
350 1mzb_A Ferric uptake regulatio 27.1 1.8E+02 0.006 20.9 6.5 60 303-364 9-69 (136)
351 2fu4_A Ferric uptake regulatio 26.9 1.3E+02 0.0043 19.2 6.2 60 302-363 7-67 (83)
352 2cos_A Serine/threonine protei 26.8 1E+02 0.0035 18.1 3.9 42 29-75 9-52 (54)
353 2etb_A Transient receptor pote 26.6 42 0.0014 27.3 3.1 55 16-71 5-69 (256)
354 2keb_A DNA polymerase subunit 26.0 1.6E+02 0.0053 20.0 6.3 58 295-354 27-88 (101)
355 3ctd_A Putative ATPase, AAA fa 25.8 2.5E+02 0.0085 22.2 7.8 47 281-327 36-85 (213)
356 2pnn_A Transient receptor pote 25.6 1.7E+02 0.0059 23.8 6.8 13 392-404 157-169 (273)
357 2b7e_A PRE-mRNA processing pro 25.5 68 0.0023 19.3 2.9 32 27-58 3-35 (59)
358 2fe3_A Peroxide operon regulat 25.4 2E+02 0.0067 21.0 6.2 8 193-200 40-47 (145)
359 3aji_A 26S proteasome non-ATPa 25.4 2.4E+02 0.0083 22.0 9.7 19 217-235 10-28 (231)
360 3eiq_C Programmed cell death p 25.2 3.4E+02 0.012 23.7 15.3 24 352-375 221-244 (358)
361 2wvi_A Mitotic checkpoint seri 24.7 2.3E+02 0.0078 21.4 9.4 47 192-238 78-124 (164)
362 2etb_A Transient receptor pote 24.5 1.3E+02 0.0046 24.1 5.8 118 284-404 6-157 (256)
363 2f6m_A Suppressor protein STP2 24.1 1.3E+02 0.0045 18.5 4.7 48 11-59 3-50 (65)
364 2w57_A Ferric uptake regulatio 23.9 1E+02 0.0035 22.8 4.4 12 60-71 32-43 (150)
365 2dzn_A Probable 26S proteasome 23.5 2.3E+02 0.0077 22.1 6.9 189 181-379 6-202 (228)
366 1bd8_A P19INK4D CDK4/6 inhibit 22.4 2.2E+02 0.0075 20.4 7.4 17 19-35 8-24 (156)
367 2f8y_A Notch homolog 1, transl 22.1 2.8E+02 0.0094 21.4 8.7 177 16-198 28-212 (223)
368 3d9h_A CDNA FLJ77766, highly s 22.1 1.9E+02 0.0066 23.8 6.4 86 13-100 15-113 (285)
369 2qq8_A TBC1 domain family memb 22.1 1.8E+02 0.006 25.1 6.2 43 298-340 214-256 (334)
370 3eyy_A Putative iron uptake re 21.6 1.1E+02 0.0039 22.4 4.2 33 26-58 33-65 (145)
371 4fke_A Aminopeptidase N; zinc 21.2 6.5E+02 0.022 25.4 17.5 78 227-306 706-787 (909)
372 1wty_A Hypothetical protein TT 20.7 2.2E+02 0.0076 19.8 6.3 74 327-408 3-80 (119)
373 4aez_C MAD3, mitotic spindle c 20.6 3.3E+02 0.011 21.8 8.1 48 191-238 131-178 (223)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-41 Score=330.35 Aligned_cols=428 Identities=9% Similarity=-0.063 Sum_probs=383.3
Q ss_pred CCcchHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCceeHHHHHHH
Q 038303 8 YNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV--VFPDVVSWTTIISG 85 (461)
Q Consensus 8 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~li~~ 85 (461)
++...|+.++..+.+.|++++|..+|+.|.+.. |+..++..++.+|.+.|++++|..+|+++ .++++.+++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 577789999999999999999999999998644 67789999999999999999999999998 67889999999999
Q ss_pred HHcCCChHHHHHHHhcC-CC-----------------CCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHH
Q 038303 86 LSKCGFHKEAIDMFCGI-DV-----------------KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDN 147 (461)
Q Consensus 86 ~~~~~~~~~a~~~~~~m-~~-----------------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 147 (461)
|.+.|++++|+++|+++ .. .++..+|+.++.++.+.|++++|.++|+++.+.++. +...+.
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ 238 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFD 238 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHH
Confidence 99999999999999965 11 235789999999999999999999999999987644 333332
Q ss_pred --------------------------------------HHHHHHHHcCChhhHHHHHhcCCC--CchhHHHHHHHHHHhc
Q 038303 148 --------------------------------------AILDFYIRCGSLASCGYLFVKMPK--RNVVSWTTMIGGYAER 187 (461)
Q Consensus 148 --------------------------------------~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~ 187 (461)
.++..|.+.|++++|.++|+++.+ ++..+|+.++..|.+.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHT
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Confidence 235566788999999999999988 8999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHH
Q 038303 188 GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 267 (461)
Q Consensus 188 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 267 (461)
|++++|.++|+++.+. .+.+..++..++.++.+.|+.++|..+++.+.+ ..+.+..+++.++..|.+.|++++|.+
T Consensus 319 g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 319 SRFIDVLAITTKILEI--DPYNLDVYPLHLASLHESGEKNKLYLISNDLVD--RHPEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHhccHHHHHH
Confidence 9999999999999986 455788999999999999999999999999987 345677889999999999999999999
Q ss_pred HHHHcc---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCC
Q 038303 268 VFNMLA---YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 344 (461)
Q Consensus 268 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 344 (461)
+|+++. ..+..+|+.++.++.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+ ..
T Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~ 471 (597)
T 2xpi_A 395 YFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA--LF 471 (597)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC
Confidence 999876 3467899999999999999999999999999864 34778999999999999999999999999987 24
Q ss_pred CCCcchHHHHHHHHhhcCCHHHHHHHHHhC-------CCCch--hhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChh
Q 038303 345 VPQMQHYACVVDMYGRAGLLEEAEAFIREM-------PIEAE--WSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVG 415 (461)
Q Consensus 345 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 415 (461)
+.+..+|..++..|.+.|++++|.++|+++ +..|+ ..+|..+..+|.+.|++++|++.++++.+..|.++.
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 551 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence 457889999999999999999999999998 34677 679999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHHcCC
Q 038303 416 TFALMSNTFAGADRWEDTNKIRDEIRRMGL 445 (461)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 445 (461)
+|..++.+|.+.|++++|.+.++++.+...
T Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 552 VHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999988643
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-38 Score=308.76 Aligned_cols=412 Identities=9% Similarity=-0.048 Sum_probs=363.2
Q ss_pred CCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCC-----------
Q 038303 6 SSYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP----------- 74 (461)
Q Consensus 6 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----------- 74 (461)
..||..++..++.+|.+.|++++|..+|+.+... +++..+++.++.+|.+.|++++|.++|+++.+.
T Consensus 113 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 190 (597)
T 2xpi_A 113 ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLL 190 (597)
T ss_dssp HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------
T ss_pred hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccc
Confidence 4578889999999999999999999999988653 578899999999999999999999999976433
Q ss_pred --------CceeHHHHHHHHHcCCChHHHHHHHhcC-CCCCCch-hHHH-------------------------------
Q 038303 75 --------DVVSWTTIISGLSKCGFHKEAIDMFCGI-DVKPNAN-TLVS------------------------------- 113 (461)
Q Consensus 75 --------~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~p~~~-~~~~------------------------------- 113 (461)
+..+|+.++.+|.+.|++++|+++|++| ...|+.. .+..
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (597)
T 2xpi_A 191 MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF 270 (597)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHH
T ss_pred ccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHH
Confidence 3788999999999999999999999999 5555433 2222
Q ss_pred -------HHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCC---CchhHHHHHHHH
Q 038303 114 -------VLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK---RNVVSWTTMIGG 183 (461)
Q Consensus 114 -------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~ 183 (461)
++..|.+.|++++|.++|+.+.+. +++..+++.++..|.+.|++++|..+|+++.+ .+..+|+.++.+
T Consensus 271 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 348 (597)
T 2xpi_A 271 LRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLAS 348 (597)
T ss_dssp HHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHH
Confidence 245577889999999999999876 47899999999999999999999999999864 578899999999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHH
Q 038303 184 YAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 263 (461)
Q Consensus 184 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 263 (461)
+.+.|++++|..+++++.+. .+.+..++..+...+.+.|++++|..+|+.+.+ -.+.+..+++.++..|.+.|+++
T Consensus 349 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 424 (597)
T 2xpi_A 349 LHESGEKNKLYLISNDLVDR--HPEKAVTWLAVGIYYLCVNKISEARRYFSKSST--MDPQFGPAWIGFAHSFAIEGEHD 424 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999864 566788999999999999999999999999987 23345678999999999999999
Q ss_pred HHHHHHHHccC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHh
Q 038303 264 IAIQVFNMLAY---KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340 (461)
Q Consensus 264 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 340 (461)
+|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+... .+..+|..++..|.+.|++++|.++|+++.+
T Consensus 425 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 425 QAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALL 503 (597)
T ss_dssp HHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999998763 3778999999999999999999999999998643 3788999999999999999999999999987
Q ss_pred hc---CCCCC--cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 038303 341 VY---EIVPQ--MQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVS 413 (461)
Q Consensus 341 ~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 413 (461)
.. +..|+ ..+|..++.+|.+.|++++|.++++++ ...| +..+|..+..+|.+.|++++|.+.++++.+..|.+
T Consensus 504 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 22 55777 789999999999999999999999998 3334 77899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhc
Q 038303 414 VGTFALMSNTFAG 426 (461)
Q Consensus 414 ~~~~~~l~~~~~~ 426 (461)
+.++..+..+|..
T Consensus 584 ~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 584 IMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHhc
Confidence 9999999888753
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=9.3e-29 Score=227.56 Aligned_cols=370 Identities=10% Similarity=0.025 Sum_probs=259.1
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhC---CCCCceeHHHHHHHHHcCCChH
Q 038303 17 LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV---VFPDVVSWTTIISGLSKCGFHK 93 (461)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~~~~~ 93 (461)
...+.+.|++++|.+.+..+.+..+. +...+..+...+...|++++|...++.. .+.+..+|..+...+.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 45567788888888888888776532 4455666666777788888888877765 3345566777777777777777
Q ss_pred HHHHHHhcC-CCCCCc-hhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCC
Q 038303 94 EAIDMFCGI-DVKPNA-NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK 171 (461)
Q Consensus 94 ~a~~~~~~m-~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 171 (461)
+|++.|+++ ...|+. .+|..+..++...|++++|.+.++.+.+..+. +...+..+...+...|++++|...|+++.+
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777777776 444543 34566666666666666666666666655332 334444455555555555555555555432
Q ss_pred ---CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchH
Q 038303 172 ---RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLV 248 (461)
Q Consensus 172 ---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 248 (461)
.+..+|..+...+...|++++|...|+++.+. .| .+...
T Consensus 164 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p-----------------------------------~~~~~ 205 (388)
T 1w3b_A 164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL---DP-----------------------------------NFLDA 205 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CT-----------------------------------TCHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CC-----------------------------------CcHHH
Confidence 22344555555555555555555555555442 11 22344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHcc--CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcC
Q 038303 249 GNAVINMYVKCGDVGIAIQVFNMLA--YK-DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325 (461)
Q Consensus 249 ~~~li~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 325 (461)
+..+...+...|++++|...|++.. .| +..++..+...+.+.|++++|.+.++++.+... .+..++..+...+.+.
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHc
Confidence 5666777777777777777777654 23 567788888888888999999999988887532 2457788888889999
Q ss_pred CChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHH
Q 038303 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIR 403 (461)
Q Consensus 326 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 403 (461)
|++++|...|+++.+ ..+.+..++..+...+.+.|++++|...++++ ...| +..++..+...+.+.|++++|...+
T Consensus 285 g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 285 GSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp SCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999998887 34567788888999999999999999999888 4444 4567888888899999999999999
Q ss_pred HHHhhcCCCChhHHHHHHHHHhccCC
Q 038303 404 QDLVNKKGVSVGTFALMSNTFAGADR 429 (461)
Q Consensus 404 ~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (461)
+++.+..|.++.+|..++..+.+.|+
T Consensus 363 ~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 363 KEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999889999999999988877653
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2e-30 Score=242.60 Aligned_cols=183 Identities=13% Similarity=0.156 Sum_probs=141.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccc---------hhhhHHHHHHHHHhhcCCCCc
Q 038303 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS---------ALSFGKYVHSYISTRYDLSVS 245 (461)
Q Consensus 175 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~ 245 (461)
..++.+|.+|++.|++++|+++|++|.+.| ++||..||+.+|.+|++.+ .++.|.++|++|.. .|+.||
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~G-v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~-~G~~Pd 104 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNG-VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV-DKVVPN 104 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH-TTCCCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH-hCCCCC
Confidence 346667777777777777777777777777 7777777777777776543 35667777777777 777788
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHcc----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 038303 246 NLVGNAVINMYVKCGDVGIAIQVFNMLA----YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISA 321 (461)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 321 (461)
..+|++||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 7788888888888888888888877776 457778888888888888888888888888888888888888888888
Q ss_pred HHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhh
Q 038303 322 CSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR 360 (461)
Q Consensus 322 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 360 (461)
|++.|++++|.++|++|.+ .+..|+..||+.++..|+.
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHS
T ss_pred HhhCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhc
Confidence 8888888888888888877 6778888888877777765
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1e-27 Score=220.67 Aligned_cols=352 Identities=11% Similarity=0.020 Sum_probs=275.8
Q ss_pred HHHHcCCChHHHHHHHhcC-CCCCCch-hHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhh
Q 038303 84 SGLSKCGFHKEAIDMFCGI-DVKPNAN-TLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLAS 161 (461)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~m-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 161 (461)
..+.+.|++++|++.++++ ...|+.. .+..+...+...|++++|...++...+..+ .+..+|..+...+.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHH
Confidence 3445566666666666665 4445433 334444455666777777777766666543 366677777777777777777
Q ss_pred HHHHHhcCCC--C-chhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHh
Q 038303 162 CGYLFVKMPK--R-NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST 238 (461)
Q Consensus 162 a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~ 238 (461)
|...|+++.+ | +..+|..+..++.+.|++++|.+.|+++.+. .+.+...+..+...+...|++++|...++.+.+
T Consensus 86 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7777777653 3 3456777888888888888888888887773 233344555666667777888888888888776
Q ss_pred hcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHH
Q 038303 239 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY--K-DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTF 315 (461)
Q Consensus 239 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 315 (461)
. .+.+..++..+...+.+.|++++|...|+++.+ | +...|..+...+...|++++|...+++..+... .+..++
T Consensus 164 ~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 240 (388)
T 1w3b_A 164 T--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVH 240 (388)
T ss_dssp H--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHH
T ss_pred h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHH
Confidence 2 233456788899999999999999999998873 3 567888999999999999999999999988532 246888
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC--CCCchhhHHHHHHHHHHhc
Q 038303 316 IALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVWGALLNACRIH 393 (461)
Q Consensus 316 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~ 393 (461)
..+...+...|++++|...|+++.+ ..+.+..+|..+...+.+.|++++|.+.++++ ..+++..++..+...+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 9999999999999999999999987 23445778999999999999999999999998 3345677889999999999
Q ss_pred CChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 038303 394 RNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 443 (461)
|++++|...++++.+..|.+..++..++.+|.+.|++++|.+.++++.+.
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999874
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.9e-29 Score=236.05 Aligned_cols=200 Identities=11% Similarity=0.100 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHhcCCCCCC-hhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCC--------
Q 038303 191 KEAVSVFQEMEKTKEAEPN-EATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGD-------- 261 (461)
Q Consensus 191 ~~a~~~~~~m~~~~~~~~~-~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------- 261 (461)
..+..+.+++.+.+ ..+. ...++.+|++|++.|++++|.++|++|.+ .|+.||..+|+.||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~-~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~ 84 (501)
T 4g26_A 7 SPSENLSRKAKKKA-IQQSPEALLKQKLDMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATESSPNP 84 (501)
T ss_dssp ------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSSSCCH
T ss_pred chHHHHHHHHHHhc-ccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhhhhcc
Confidence 34555667777766 5544 44688899999999999999999999999 8999999999999999987765
Q ss_pred -HHHHHHHHHHcc----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHH
Q 038303 262 -VGIAIQVFNMLA----YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFK 336 (461)
Q Consensus 262 -~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 336 (461)
+++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+
T Consensus 85 ~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 688999999997 579999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC---CCCchhhHHHHHHHHHHhc
Q 038303 337 AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM---PIEAEWSVWGALLNACRIH 393 (461)
Q Consensus 337 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~ 393 (461)
+|.+ .|+.||..+|++||.+|++.|++++|.+++++| +..|+..||+.++..|+..
T Consensus 165 ~M~~-~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 165 HMVE-SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHh-cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999 899999999999999999999999999999999 8899999999999998654
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.4e-25 Score=210.83 Aligned_cols=427 Identities=8% Similarity=-0.104 Sum_probs=299.2
Q ss_pred chHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhC---CCCCceeHHHHHHHHH
Q 038303 11 YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV---VFPDVVSWTTIISGLS 87 (461)
Q Consensus 11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~li~~~~ 87 (461)
..+......+.+.|++++|...|+.+.+.. |+..+|..+..++.+.|++++|...|+++ .+.+..+|..+..++.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 456677788999999999999999999977 68999999999999999999999999987 3345678899999999
Q ss_pred cCCChHHHHHHHhcC-CCC-CCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH---cCChhhH
Q 038303 88 KCGFHKEAIDMFCGI-DVK-PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIR---CGSLASC 162 (461)
Q Consensus 88 ~~~~~~~a~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a 162 (461)
+.|++++|+..|+++ ... ++......++..+........+.+.+..+...+..|+......-...... ......+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 999999999999998 333 35555555555555444444444444333222211111111100000000 0111111
Q ss_pred HHHHhcCC---------C-CchhHHHHHHHHHHh---cCChHHHHHHHHHHHh-----cCCC-------CCChhhHHHHH
Q 038303 163 GYLFVKMP---------K-RNVVSWTTMIGGYAE---RGFCKEAVSVFQEMEK-----TKEA-------EPNEATLVNVL 217 (461)
Q Consensus 163 ~~~~~~~~---------~-~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~~~~-------~~~~~~~~~~l 217 (461)
...+.... . .+...+......+.. .|++++|..+|+++.+ .... +.+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 11111111 1 124444444444554 7888888888888877 3101 22345666777
Q ss_pred HHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCC---ChhhHHHHHHHHHhcCChH
Q 038303 218 SACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DKISWSTVISGLAMNGCGR 294 (461)
Q Consensus 218 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~ 294 (461)
..+...|+++.|...++.+.+ .. |+...+..+...+...|++++|...++.+.+. +...|..+...+...|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~-~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIE-LF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHH-HC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHCCCHHHHHHHHHHHHh-hC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 778888888888888888877 22 22667788888888888888888888877642 5667888888888888999
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 038303 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 295 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
+|...+++..+.... +...+..+...+...|++++|...++.+.+ ..+.+...+..+...+.+.|++++|...++++
T Consensus 322 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 322 QAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HcccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999988888875332 456777888888888999999988888877 23445677888888888889999998888877
Q ss_pred -CCCch-------hhHHHHHHHHHHh---cCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 038303 375 -PIEAE-------WSVWGALLNACRI---HRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 375 -~~~p~-------~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 443 (461)
...|+ ...+..+...+.. .|++++|...++++.+..|.++.++..++.+|.+.|++++|...+++..+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 22222 2367777778888 888999999999888888888888888899999999999999988888775
Q ss_pred CC
Q 038303 444 GL 445 (461)
Q Consensus 444 g~ 445 (461)
..
T Consensus 479 ~~ 480 (514)
T 2gw1_A 479 AR 480 (514)
T ss_dssp CS
T ss_pred cc
Confidence 43
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=7.5e-24 Score=203.49 Aligned_cols=424 Identities=6% Similarity=-0.051 Sum_probs=318.7
Q ss_pred chHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhC---CCCCceeHHHHHHHHH
Q 038303 11 YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV---VFPDVVSWTTIISGLS 87 (461)
Q Consensus 11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~li~~~~ 87 (461)
..|..+...+.+.|++++|...|+.+.+..+ .++.+|..+..+|.+.|++++|.+.|++. .+.+...+..+...+.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 4577788889999999999999999999764 37889999999999999999999999988 3456778888999999
Q ss_pred cCCChHHHHHHHhcCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChhhHHHH
Q 038303 88 KCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLN--ENNIILDNAILDFYIRCGSLASCGYL 165 (461)
Q Consensus 88 ~~~~~~~a~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~ 165 (461)
..|++++|++.|+.+...|+... ..+..+...+....+...++.+....+ .+........+..+....+.+.+...
T Consensus 105 ~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLSLNGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHTCHHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HcCCHHHHHHHHHHHhcCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 99999999999975555554332 234456666777889999998876521 11112223445556677788888887
Q ss_pred HhcCCCCchh---HHHHHHHHHHh--------cCChHHHHHHHHHHHhcCCCCCC--------hhhHHHHHHHhhccchh
Q 038303 166 FVKMPKRNVV---SWTTMIGGYAE--------RGFCKEAVSVFQEMEKTKEAEPN--------EATLVNVLSACSSISAL 226 (461)
Q Consensus 166 ~~~~~~~~~~---~~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~~~~--------~~~~~~~l~~~~~~~~~ 226 (461)
+......+.. ....+...+.. .|++++|..+|+++.+. .|+ ..++..+...+...|++
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA---NTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH---CCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 7777664333 33333333222 24788999999999874 344 22455666677888999
Q ss_pred hhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccC---CChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 038303 227 SFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY---KDKISWSTVISGLAMNGCGRQALQLFSLM 303 (461)
Q Consensus 227 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 303 (461)
+.|...++.+.+ . .|+...+..+...+...|++++|...++++.+ .+..+|..+...+...|++++|...+++.
T Consensus 260 ~~A~~~~~~~~~-~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 260 LDAQVLLQESIN-L--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHH-H--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-c--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999877 2 34467788888899999999999999988763 35778889999999999999999999999
Q ss_pred HhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCch---
Q 038303 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE--- 379 (461)
Q Consensus 304 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--- 379 (461)
.+.... +...+..+...+...|++++|...++++.+ ..+.+...+..+...+...|++++|...++++ ...|+
T Consensus 337 ~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 337 QSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKL--KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 886422 457788888899999999999999999987 23455778888999999999999999999887 21121
Q ss_pred ----hhHHHHHHHHHHhc----------CChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcCC
Q 038303 380 ----WSVWGALLNACRIH----------RNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445 (461)
Q Consensus 380 ----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 445 (461)
...+......+... |++++|...++++.+..|.+..++..++.+|.+.|++++|.+.+++..+...
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 11233344556666 9999999999999999999999999999999999999999999999887654
Q ss_pred c
Q 038303 446 K 446 (461)
Q Consensus 446 ~ 446 (461)
.
T Consensus 494 ~ 494 (537)
T 3fp2_A 494 T 494 (537)
T ss_dssp -
T ss_pred C
Confidence 3
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=4.9e-23 Score=193.24 Aligned_cols=376 Identities=8% Similarity=-0.058 Sum_probs=219.0
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhC---CCCCceeHHHHHHHHHcCCChHHHHHHHhcC-CC
Q 038303 29 ALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV---VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI-DV 104 (461)
Q Consensus 29 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~ 104 (461)
+...+..+....+ .+...+..+...+.+.|++++|...|+++ .+.+...|..+..++...|++++|+..|+++ ..
T Consensus 11 ~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 11 VDLGTENLYFQSM-ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp ------------C-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccccccccH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3344444444332 34556666666777777777777777665 2334556666666666666666666666666 33
Q ss_pred CC-CchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCChhhHHHHHhcCCCCchhHHHHH
Q 038303 105 KP-NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNI---ILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180 (461)
Q Consensus 105 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 180 (461)
.| +...+..+...+...|++++|.+.|+.+.+..+. +. ..+..+...+... .+..+
T Consensus 90 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-------------------~~~~~ 149 (450)
T 2y4t_A 90 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQ-------------------RLRSQ 149 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHH-------------------HHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHH-------------------HHHHH
Confidence 33 3445555555566666666666666665554322 22 3333333321111 12223
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcC
Q 038303 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCG 260 (461)
Q Consensus 181 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 260 (461)
...+...|++++|...|+++.+. .+.+...+..+..++...|+++.|...++.+.+. .+.+..++..+...|...|
T Consensus 150 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 150 ALNAFGSGDYTAAIAFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KNDNTEAFYKISTLYYQLG 225 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--HCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 44466777777777777777764 3445666666777777777777777777776652 2334556677777777777
Q ss_pred CHHHHHHHHHHccC--C-ChhhHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCCC-----HhHHHHHHH
Q 038303 261 DVGIAIQVFNMLAY--K-DKISWSTV------------ISGLAMNGCGRQALQLFSLMIINAVFPD-----DVTFIALIS 320 (461)
Q Consensus 261 ~~~~a~~~~~~~~~--~-~~~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~ 320 (461)
++++|...|+++.. | +...+..+ ...+.+.|++++|...|+++.+. .|+ ...+..+..
T Consensus 226 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 226 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICH 303 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHH
Confidence 77777777776652 2 23333333 66777778888888888887764 344 335667777
Q ss_pred HHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCchhh-HHHHHHHH---------
Q 038303 321 ACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS-VWGALLNA--------- 389 (461)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~--------- 389 (461)
.+.+.|++++|+..++.+.+ -.+.+...|..+..+|...|++++|...++++ ...|+.. .+..+..+
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 381 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQ--MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQK 381 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccc
Confidence 77788888888888877766 12345677777788888888888888888777 4445433 33333321
Q ss_pred ---HHhcC-----ChHHHHHHHHH-HhhcCCCC----------hhHHHHHHHHHhccCChhhH
Q 038303 390 ---CRIHR-----NDEMFDRIRQD-LVNKKGVS----------VGTFALMSNTFAGADRWEDT 433 (461)
Q Consensus 390 ---~~~~~-----~~~~a~~~~~~-~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A 433 (461)
|...| +.+++.+.+++ ..+..|.+ ...+..+..+|...|+.+.+
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 22223 55666777765 33333321 12555666666666665543
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=7e-23 Score=192.21 Aligned_cols=323 Identities=9% Similarity=-0.006 Sum_probs=256.7
Q ss_pred CchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCC---CchhHHHHHHHH
Q 038303 107 NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK---RNVVSWTTMIGG 183 (461)
Q Consensus 107 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~ 183 (461)
+...+..+...+.+.|++++|..+|+.+.+..+. +..++..+..++...|++++|...|+++.+ .+..+|..+..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 4455666667777777777777777777766433 667777777788888888888888877654 346677888888
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCh----hhHHHH------------HHHhhccchhhhHHHHHHHHHhhcCCCCcch
Q 038303 184 YAERGFCKEAVSVFQEMEKTKEAEPNE----ATLVNV------------LSACSSISALSFGKYVHSYISTRYDLSVSNL 247 (461)
Q Consensus 184 ~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~~~------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 247 (461)
|.+.|++++|...|+++.+. .|+. ..+..+ ...+...|+++.|...++.+.+ ..+.+..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~ 178 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKS---NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE--VCVWDAE 178 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChH
Confidence 88888888888888888773 3433 444444 3447889999999999999987 2345677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHccC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-hHHHHH-----
Q 038303 248 VGNAVINMYVKCGDVGIAIQVFNMLAY---KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD-VTFIAL----- 318 (461)
Q Consensus 248 ~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l----- 318 (461)
++..+..+|.+.|++++|...|+++.+ .+..+|..+...+...|++++|...++++.+. .|+. ..+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHH
Confidence 889999999999999999999998863 47889999999999999999999999999875 4444 344443
Q ss_pred -------HHHHHcCCChHHHHHHHHHhHhhcCCCCC-----cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHH
Q 038303 319 -------ISACSHGGLVDQGLILFKAMSTVYEIVPQ-----MQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWG 384 (461)
Q Consensus 319 -------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 384 (461)
...|...|++++|...|+.+.+. .|+ ...+..+..++.+.|++++|...++++ ...| +...|.
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 333 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 77899999999999999999872 243 457888999999999999999999998 4344 577889
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHH------------HHhccC-----ChhhHHHHHHHH
Q 038303 385 ALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSN------------TFAGAD-----RWEDTNKIRDEI 440 (461)
Q Consensus 385 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~------------~~~~~g-----~~~~A~~~~~~m 440 (461)
.+..+|...|++++|...++++.+..|.++.++..+.. .|...| +.+++.+.++++
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999884 355555 556777777764
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.2e-22 Score=192.13 Aligned_cols=407 Identities=7% Similarity=-0.115 Sum_probs=283.9
Q ss_pred CCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhC---CCCCceeHHHHH
Q 038303 7 SYNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV---VFPDVVSWTTII 83 (461)
Q Consensus 7 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~li 83 (461)
.||...|..+..++...|++++|...++.+.+.++ .+..+|..+..++.+.|++++|...|+++ .+++......++
T Consensus 36 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 114 (514)
T 2gw1_A 36 KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHH
T ss_pred CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 37888999999999999999999999999999774 36778999999999999999999999988 223444444444
Q ss_pred HHHHcCCChHHHHHHHhcC---CCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcC---------CCChhHHHHHHH
Q 038303 84 SGLSKCGFHKEAIDMFCGI---DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLN---------ENNIILDNAILD 151 (461)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~m---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~ 151 (461)
..+........+.+.+..+ +..|+...+..-...............+...+..... +.+...+.....
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 4444333333332222111 1111111111100000000111111111111111110 112333333333
Q ss_pred HHHH---cCChhhHHHHHhcCCC-----------------CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChh
Q 038303 152 FYIR---CGSLASCGYLFVKMPK-----------------RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEA 211 (461)
Q Consensus 152 ~~~~---~g~~~~a~~~~~~~~~-----------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 211 (461)
.+.. .|++++|...|+++.+ .+..+|..+...+...|++++|...|+++.+. .|+..
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~~~~~ 271 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL---FPRVN 271 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH---CCCHH
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CccHH
Confidence 3333 6777777777666533 13456777888888999999999999998884 34477
Q ss_pred hHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccC---CChhhHHHHHHHHH
Q 038303 212 TLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY---KDKISWSTVISGLA 288 (461)
Q Consensus 212 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~ 288 (461)
.+..+...+...|+++.|...++.+.+ ..+.+..++..+...+...|++++|...++++.+ .+...+..+...+.
T Consensus 272 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 349 (514)
T 2gw1_A 272 SYIYMALIMADRNDSTEYYNYFDKALK--LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAY 349 (514)
T ss_dssp HHHHHHHHHHTSSCCTTGGGHHHHHHT--TCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhh--cCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHH
Confidence 788888888899999999999988877 3344566788899999999999999999988752 35678888999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHhh---c
Q 038303 289 MNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ----MQHYACVVDMYGR---A 361 (461)
Q Consensus 289 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~---~ 361 (461)
..|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.....-.++ ...+..+...+.. .
T Consensus 350 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 428 (514)
T 2gw1_A 350 RENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV 428 (514)
T ss_dssp TTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT
T ss_pred HcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc
Confidence 9999999999999998753 225578888899999999999999999988773222222 3388889999999 9
Q ss_pred CCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHH
Q 038303 362 GLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420 (461)
Q Consensus 362 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 420 (461)
|++++|...++++ ...| +...+..+...+...|++++|...++++.+..|.++..+..+
T Consensus 429 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp THHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 9999999999988 3333 456777888889999999999999999999998888777655
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=2.8e-21 Score=185.58 Aligned_cols=397 Identities=9% Similarity=-0.028 Sum_probs=287.0
Q ss_pred CCcchHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHH
Q 038303 8 YNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLS 87 (461)
Q Consensus 8 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~ 87 (461)
.+...+..+..++...|++++|++.++.+.+.++ .+..++..+..++...|++++|...|+.+ ..++...+..+..+.
T Consensus 57 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~ 134 (537)
T 3fp2_A 57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASANESLGNFTDAMFDLSVL-SLNGDFDGASIEPML 134 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C-----------CHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHH
Confidence 3667788999999999999999999999999874 36788899999999999999999999744 323333333455555
Q ss_pred cCCChHHHHHHHhcC-CC--------CCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCC-hhHHHHHHHHHH---
Q 038303 88 KCGFHKEAIDMFCGI-DV--------KPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN-IILDNAILDFYI--- 154 (461)
Q Consensus 88 ~~~~~~~a~~~~~~m-~~--------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~--- 154 (461)
..+...+|+..++++ +. .|+...... +....+.+.+...+..... ..+. ......+...+.
T Consensus 135 ~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 208 (537)
T 3fp2_A 135 ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----FFGIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSATD 208 (537)
T ss_dssp HHHHHHHHHHHHHHHCC-------CCCCCHHHHHH----HHHTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSH
T ss_pred HHHHHHHHHHHHHHHHHhCccccccccchHhHHHH----HHHhcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhh
Confidence 666678888888877 22 233333332 2223333332222111111 1111 112222222221
Q ss_pred -----HcCChhhHHHHHhcCCC--Cc--------hhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 038303 155 -----RCGSLASCGYLFVKMPK--RN--------VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219 (461)
Q Consensus 155 -----~~g~~~~a~~~~~~~~~--~~--------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~ 219 (461)
..|++++|..+|+++.+ |+ ..+|..+...+...|++++|...|++..+ ..|+...+..+...
T Consensus 209 ~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~l~~~ 285 (537)
T 3fp2_A 209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN---LHPTPNSYIFLALT 285 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh---cCCCchHHHHHHHH
Confidence 22578888888888765 33 23567777888999999999999999998 55668888889999
Q ss_pred hhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccC---CChhhHHHHHHHHHhcCChHHH
Q 038303 220 CSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY---KDKISWSTVISGLAMNGCGRQA 296 (461)
Q Consensus 220 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 296 (461)
+...|+++.|...++.+.+. .+.+..++..+...+...|++++|...|+++.+ .+...|..+...+...|++++|
T Consensus 286 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 363 (537)
T 3fp2_A 286 LADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTES 363 (537)
T ss_dssp TCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999872 334567789999999999999999999998763 3567899999999999999999
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHhhc----------C
Q 038303 297 LQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ----MQHYACVVDMYGRA----------G 362 (461)
Q Consensus 297 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~----------g 362 (461)
...++++.+.. +.+...+..+...+...|++++|...|+.+.+...-.++ ...+..+...+.+. |
T Consensus 364 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 442 (537)
T 3fp2_A 364 EAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442 (537)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh
Confidence 99999998864 234578888999999999999999999998763211121 12234455677777 9
Q ss_pred CHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHH
Q 038303 363 LLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFA 418 (461)
Q Consensus 363 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 418 (461)
++++|...++++ ...| +...+..+...+...|++++|...++++.+..|.+.....
T Consensus 443 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 443 KFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999998 3333 4567888888899999999999999999998887766544
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=7.2e-20 Score=166.04 Aligned_cols=305 Identities=9% Similarity=-0.029 Sum_probs=149.7
Q ss_pred hhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCC---CchhHHHHHHHHHH
Q 038303 109 NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK---RNVVSWTTMIGGYA 185 (461)
Q Consensus 109 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~ 185 (461)
..+..+...+...|++++|...++.+.+..+. +..++..+...+...|++++|...|+++.+ .+...|..+...+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 34555556666667777777777766665443 556666677777777777777777766653 24566777777777
Q ss_pred hcCChHHHHHHHHHHHhcCCCCC----ChhhHHHH------------HHHhhccchhhhHHHHHHHHHhhcCCCCcchHH
Q 038303 186 ERGFCKEAVSVFQEMEKTKEAEP----NEATLVNV------------LSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249 (461)
Q Consensus 186 ~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~~~------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 249 (461)
..|++++|...|++..+ ..| +...+..+ ...+...|+++.|...++.+.+ ..+.+...+
T Consensus 83 ~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~ 157 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLK---SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE--VCVWDAELR 157 (359)
T ss_dssp HHTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred HcCChHHHHHHHHHHHh---cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCchHHH
Confidence 77777777777777776 334 22222222 2333444444444444444433 112223334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHccC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-hHHH---------
Q 038303 250 NAVINMYVKCGDVGIAIQVFNMLAY---KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD-VTFI--------- 316 (461)
Q Consensus 250 ~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~--------- 316 (461)
..+...+...|++++|...++.+.+ .+...+..+...+...|++++|...+++..+.. |+. ..+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHH
Confidence 4444444455555555555444432 133444444444555555555555555544421 111 1111
Q ss_pred ---HHHHHHHcCCChHHHHHHHHHhHhhcCCCCCc----chHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHH
Q 038303 317 ---ALISACSHGGLVDQGLILFKAMSTVYEIVPQM----QHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALL 387 (461)
Q Consensus 317 ---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 387 (461)
.+...+...|++++|...++.+.+.. +.+. ..+..+..++.+.|++++|...+++. ...| +...+..+.
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 313 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 11233444455555555544444411 1111 11223344444444444444444444 1112 233444444
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 038303 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423 (461)
Q Consensus 388 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 423 (461)
..+...|++++|...++++.+..|.+..++..+..+
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKA 349 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 444444555555555555444444444444444443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=1.7e-19 Score=163.66 Aligned_cols=295 Identities=9% Similarity=0.003 Sum_probs=246.5
Q ss_pred ChhHHHHHHHHHHHcCChhhHHHHHhcCCC---CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHH
Q 038303 142 NIILDNAILDFYIRCGSLASCGYLFVKMPK---RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLS 218 (461)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~ 218 (461)
+...+..+...+...|++++|...|+++.+ .+..+|..+..++...|++++|...++++.+. .+.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHHH
Confidence 455677888999999999999999998864 45778999999999999999999999999985 3446788889999
Q ss_pred HhhccchhhhHHHHHHHHHhhcCCCC----cchHHHHH------------HHHHHhcCCHHHHHHHHHHccC---CChhh
Q 038303 219 ACSSISALSFGKYVHSYISTRYDLSV----SNLVGNAV------------INMYVKCGDVGIAIQVFNMLAY---KDKIS 279 (461)
Q Consensus 219 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l------------i~~~~~~g~~~~a~~~~~~~~~---~~~~~ 279 (461)
.+...|+++.|...++.+.+ ..| +...+..+ ...+...|++++|.+.++++.+ .+...
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 156 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLK---SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL 156 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHcCChHHHHHHHHHHHh---cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHH
Confidence 99999999999999999976 233 34444444 5788999999999999998763 36778
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHH-------
Q 038303 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA------- 352 (461)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------- 352 (461)
+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...++...+. .+.+...+.
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKK 233 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHH
Confidence 8999999999999999999999999863 336688899999999999999999999999872 223333332
Q ss_pred -----HHHHHHhhcCCHHHHHHHHHhC-CCCchhh-----HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHH
Q 038303 353 -----CVVDMYGRAGLLEEAEAFIREM-PIEAEWS-----VWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421 (461)
Q Consensus 353 -----~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 421 (461)
.+...+.+.|++++|...++++ ...|+.. .+..+...+...|++++|...++++.+..|.++.++..++
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 313 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 2366789999999999999988 3333322 3445667799999999999999999999999999999999
Q ss_pred HHHhccCChhhHHHHHHHHHHcC
Q 038303 422 NTFAGADRWEDTNKIRDEIRRMG 444 (461)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~m~~~g 444 (461)
.++.+.|++++|.+.+++..+..
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999998754
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=4.3e-19 Score=159.03 Aligned_cols=285 Identities=10% Similarity=-0.029 Sum_probs=188.8
Q ss_pred ChhHHHHHHHHHHHcCChhhHHHHHhcCCC---CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHH
Q 038303 142 NIILDNAILDFYIRCGSLASCGYLFVKMPK---RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLS 218 (461)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~ 218 (461)
+...+..+...+...|++++|..+|+++.+ .+...+..++.++...|++++|..+++++.+. .+.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHH
Confidence 333444444445555555555555554432 23334444455555555556666555555553 2334445555555
Q ss_pred Hhhccc-hhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccC---CChhhHHHHHHHHHhcCChH
Q 038303 219 ACSSIS-ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY---KDKISWSTVISGLAMNGCGR 294 (461)
Q Consensus 219 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 294 (461)
.+...| +++.|...++...+ -.+.+...+..+...+...|++++|...++++.+ .+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATT--LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHT--TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 555555 55555555555544 1222345566777777777777777777776652 24566777778888888888
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcC-------CCCCcchHHHHHHHHhhcCCHHHH
Q 038303 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE-------IVPQMQHYACVVDMYGRAGLLEEA 367 (461)
Q Consensus 295 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A 367 (461)
+|.+.+++..+.. +.+...+..+...+...|++++|...++...+... .+.....+..+...+.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888887753 23457777888888888888888888888766221 134456888888889999999999
Q ss_pred HHHHHhC-CCC-chhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHH-hccCChh
Q 038303 368 EAFIREM-PIE-AEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF-AGADRWE 431 (461)
Q Consensus 368 ~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 431 (461)
...+++. ... .+...+..+...+...|++++|...++++.+..|.++.++..++.++ ...|+.+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9988887 222 34567777888888999999999999999998898999999999888 4556543
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=2.6e-19 Score=163.14 Aligned_cols=281 Identities=9% Similarity=-0.083 Sum_probs=218.0
Q ss_pred HHcCChhhHHH-HHhcCCC-----C--chhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccch
Q 038303 154 IRCGSLASCGY-LFVKMPK-----R--NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225 (461)
Q Consensus 154 ~~~g~~~~a~~-~~~~~~~-----~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~ 225 (461)
.-.|++++|.. .|++..+ | +...+..+...+.+.|++++|...|+++.+. .+.+...+..+..++...|+
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcC
Confidence 34477888887 7776553 1 3456778888888899999999999998875 45566778888888888899
Q ss_pred hhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCC---ChhhHHH---------------HHHHH
Q 038303 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DKISWST---------------VISGL 287 (461)
Q Consensus 226 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~---------------l~~~~ 287 (461)
++.|...++.+.+. .+.+..++..+...|...|++++|...++++... +...+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLEL--KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 99999998888772 2345667888888999999999999999887632 2222211 23334
Q ss_pred HhcCChHHHHHHHHHHHhcCCCC-CHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHH
Q 038303 288 AMNGCGRQALQLFSLMIINAVFP-DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366 (461)
Q Consensus 288 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 366 (461)
...|++++|...++++.+..... +..++..+...+...|++++|...++++... .+.+...+..+...+.+.|++++
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence 48899999999999998864322 4788899999999999999999999999872 34557889999999999999999
Q ss_pred HHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC-----------hhHHHHHHHHHhccCChhhH
Q 038303 367 AEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVS-----------VGTFALMSNTFAGADRWEDT 433 (461)
Q Consensus 367 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A 433 (461)
|...++++ ...| +...+..+...+...|++++|...++++.+..|.+ ..+|..++.+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999998 3334 46678888889999999999999999999877666 78999999999999999999
Q ss_pred HHHHHHH
Q 038303 434 NKIRDEI 440 (461)
Q Consensus 434 ~~~~~~m 440 (461)
..++++.
T Consensus 350 ~~~~~~~ 356 (368)
T 1fch_A 350 GAADARD 356 (368)
T ss_dssp HHHHTTC
T ss_pred HHhHHHH
Confidence 9988643
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=2.8e-17 Score=157.19 Aligned_cols=410 Identities=9% Similarity=-0.025 Sum_probs=252.6
Q ss_pred CcchHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCceeHHHHHHHH
Q 038303 9 NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--PDVVSWTTIISGL 86 (461)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~ 86 (461)
|...|..++. +.+.|++++|..+|+.+.+.. +.+...|...+..+.+.|++++|.++|++.+. |++..|...+...
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 4445666666 356677777777777776643 23555677777777777777777777777633 4555555444322
Q ss_pred -HcCCChHHHHH----HHhcC----CCCCC-chhHHHHHHHhcc---------cchhHHHHHHHHHHHhhcCCCChhHHH
Q 038303 87 -SKCGFHKEAID----MFCGI----DVKPN-ANTLVSVLSACSS---------LVSHKLGKAIHAHSLRNLNENNIILDN 147 (461)
Q Consensus 87 -~~~~~~~~a~~----~~~~m----~~~p~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 147 (461)
...|+.++|.+ +|+.. |..|+ ...|...+..... .|+++.|..+|++.++.........|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 23455555443 44443 44443 3344444443322 566666666666666621010112222
Q ss_pred HHHHHHHHcCChhhHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHHH------HhcC--CCCCCh--------h
Q 038303 148 AILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEM------EKTK--EAEPNE--------A 211 (461)
Q Consensus 148 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m------~~~~--~~~~~~--------~ 211 (461)
.........|. ..+..++. ...++++.|..++.+. .+.. .++|+. .
T Consensus 170 ~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 170 DYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 22211111110 00111110 1234556666666552 1111 023331 2
Q ss_pred hHHHHHHHhhc----cchh----hhHHHHHHHHHhhcCCCCcchHHHHHHHHHHh-------cCCHH-------HHHHHH
Q 038303 212 TLVNVLSACSS----ISAL----SFGKYVHSYISTRYDLSVSNLVGNAVINMYVK-------CGDVG-------IAIQVF 269 (461)
Q Consensus 212 ~~~~~l~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~ 269 (461)
.|...+..... .++. ..+..+|+..... .+.+..+|..++..+.+ .|+++ +|..+|
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 33333322211 1222 3566778877773 33456677777777765 68887 899999
Q ss_pred HHccC---C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH--hHHHHHHHHHHcCCChHHHHHHHHHhHhhcC
Q 038303 270 NMLAY---K-DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD--VTFIALISACSHGGLVDQGLILFKAMSTVYE 343 (461)
Q Consensus 270 ~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 343 (461)
++..+ | +...|..++..+.+.|++++|..+|+++.+. .|+. ..|..++..+.+.|++++|..+|++..+.
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-- 385 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-- 385 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 88874 3 4678888999999999999999999999984 4543 47888888888899999999999999872
Q ss_pred CCCCcchHHHHHHH-HhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChh----H
Q 038303 344 IVPQMQHYACVVDM-YGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVG----T 416 (461)
Q Consensus 344 ~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 416 (461)
.+.+...|...+.. +...|+.++|..+|++. ...| +...|..++..+.+.|+.+.|..+|+++....|.++. .
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 22223333322222 33689999999999987 3334 4667888888888999999999999999987655444 7
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHcC
Q 038303 417 FALMSNTFAGADRWEDTNKIRDEIRRMG 444 (461)
Q Consensus 417 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g 444 (461)
|...+....+.|+.+.+..+.+++.+.-
T Consensus 466 w~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 466 WARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 8888888888999999999999887654
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=6.9e-18 Score=151.11 Aligned_cols=285 Identities=13% Similarity=0.007 Sum_probs=182.1
Q ss_pred CCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCC---CchhHHHHHHH
Q 038303 106 PNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK---RNVVSWTTMIG 182 (461)
Q Consensus 106 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~ 182 (461)
.+...+..+...+...|++++|.++++.+.+..+. +...+..++..+...|++++|..+++++.+ .+...|..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 34444444444555555555555555555544332 333444444555555555555555555432 23445555555
Q ss_pred HHHhcC-ChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCC
Q 038303 183 GYAERG-FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGD 261 (461)
Q Consensus 183 ~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 261 (461)
.+...| ++++|...|++..+. .+.+...+..+...+...|+++.|...++.+.+. .+.+...+..+...|...|+
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTL--EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTT--CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhh
Confidence 556666 566666666665553 2333445555555566666666666666665551 12234455667777888888
Q ss_pred HHHHHHHHHHccCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC--------CCCCHhHHHHHHHHHHcCCChHH
Q 038303 262 VGIAIQVFNMLAYK---DKISWSTVISGLAMNGCGRQALQLFSLMIINA--------VFPDDVTFIALISACSHGGLVDQ 330 (461)
Q Consensus 262 ~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g--------~~p~~~~~~~ll~~~~~~~~~~~ 330 (461)
+++|...+++..+. +...+..+...+...|++++|...+++..+.. ......++..+...+...|++++
T Consensus 175 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 88888888777642 55678888888888999999999888887642 12335688888889999999999
Q ss_pred HHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHH-HhcCChH
Q 038303 331 GLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNAC-RIHRNDE 397 (461)
Q Consensus 331 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~~~~~ 397 (461)
|...+++..+. .+.+...+..+...+.+.|++++|.+.+++. ...| +...+..+..++ ...|+.+
T Consensus 255 A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999988872 3456778888999999999999999999988 5555 444566666665 4555543
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=1.1e-18 Score=159.02 Aligned_cols=280 Identities=8% Similarity=-0.021 Sum_probs=153.8
Q ss_pred cCCChHHHHH-HHhcC-CCCC-----CchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChh
Q 038303 88 KCGFHKEAID-MFCGI-DVKP-----NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLA 160 (461)
Q Consensus 88 ~~~~~~~a~~-~~~~m-~~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 160 (461)
..|++++|++ .|++. ...| +...+..+...+...|++++|...++.+++..+. +..++..+...+.+.|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHH
Confidence 3467777777 77765 3333 3455677777788888888888888888776544 6677788888888888888
Q ss_pred hHHHHHhcCCC---CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChh-hHHH---------------HHHHhh
Q 038303 161 SCGYLFVKMPK---RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEA-TLVN---------------VLSACS 221 (461)
Q Consensus 161 ~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~~---------------~l~~~~ 221 (461)
+|...|+++.+ .+..++..+...+...|++++|...++++.+. .|+.. .+.. .+..+.
T Consensus 116 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY---TPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---STTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 88888887653 46678888888899999999999999998874 23322 2211 111122
Q ss_pred ccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 038303 222 SISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301 (461)
Q Consensus 222 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 301 (461)
..|+++.|...++.+.+.....++. .++..+...+...|++++|...++
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~-------------------------------~~~~~l~~~~~~~g~~~~A~~~~~ 241 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDP-------------------------------DVQCGLGVLFNLSGEYDKAVDCFT 241 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCH-------------------------------HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccH-------------------------------HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444444444444321111123 344444555555555555555555
Q ss_pred HHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCch-
Q 038303 302 LMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE- 379 (461)
Q Consensus 302 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~- 379 (461)
++.+.. +.+..++..+...+...|++++|...|+++.+. .+.+...+..+..+|.+.|++++|...++++ ...|+
T Consensus 242 ~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 242 AALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 544431 112344555555555555555555555555441 1233444555555555555555555555544 11111
Q ss_pred -----------hhHHHHHHHHHHhcCChHHHHHHHHH
Q 038303 380 -----------WSVWGALLNACRIHRNDEMFDRIRQD 405 (461)
Q Consensus 380 -----------~~~~~~l~~~~~~~~~~~~a~~~~~~ 405 (461)
..+|..+..++...|+.++|..++++
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 319 RGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp ------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 23455555555555555555555543
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=7.6e-19 Score=156.97 Aligned_cols=219 Identities=12% Similarity=0.053 Sum_probs=55.4
Q ss_pred hhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHcCCChHHHHHHHhc
Q 038303 22 LAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCG 101 (461)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 101 (461)
+.|++++|.++++.+ +++.+|..|..++.+.|++++|.+.|.+. +|..+|..++.++...|++++|++.++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 344455555555555 12235556666666666666666665442 4444555555555556666666664443
Q ss_pred C-CCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCCCchhHHHHH
Q 038303 102 I-DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTM 180 (461)
Q Consensus 102 m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 180 (461)
. ...+++.+.+.++.++.+.|+++++.++++ .|+..+|+.+...|...|++++|..+|..+ ..|..+
T Consensus 87 ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~L 154 (449)
T 1b89_A 87 ARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 154 (449)
T ss_dssp ----------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHH
T ss_pred HHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHH
Confidence 3 333344555555556666666555555543 244445555666666666666666666555 255556
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcC
Q 038303 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCG 260 (461)
Q Consensus 181 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 260 (461)
+.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|......+ ...+.....++..|.+.|
T Consensus 155 A~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~l~~lv~~Yek~G 221 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRG 221 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhhHHHHHHHHHHCC
Confidence 66666666666666655555 13455555555555555555553322211 111122233445555555
Q ss_pred CHHHHHHHHHHcc
Q 038303 261 DVGIAIQVFNMLA 273 (461)
Q Consensus 261 ~~~~a~~~~~~~~ 273 (461)
++++|..+++...
T Consensus 222 ~~eEai~lLe~aL 234 (449)
T 1b89_A 222 YFEELITMLEAAL 234 (449)
T ss_dssp CHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHh
Confidence 5555555554443
No 21
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=1.5e-16 Score=158.48 Aligned_cols=383 Identities=13% Similarity=0.085 Sum_probs=291.0
Q ss_pred CcchHHHHHHHHHhhCCHHHHHHHHHHHHHhCC--CccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHH
Q 038303 9 NHYTFTQALKACSLAHPHQKALEIHAHVIEYGH--LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGL 86 (461)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 86 (461)
|+.--...+++|...|.+.+|+++++...-.+- .-+....+.++....+. +..+..+..++...-+ ...+...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence 334456778889999999999999999984321 13345666677666665 4555566555554222 45577888
Q ss_pred HcCCChHHHHHHHhcCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHH
Q 038303 87 SKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLF 166 (461)
Q Consensus 87 ~~~~~~~~a~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 166 (461)
...|.+++|..+|++.+. .....+.++. ..+++++|.++.++. -+..+|..+..++.+.|++++|...|
T Consensus 1060 i~lglyEEAf~IYkKa~~--~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDV--NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred HhCCCHHHHHHHHHHcCC--HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 899999999999998731 1112233332 668899999988855 25788999999999999999999999
Q ss_pred hcCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcc
Q 038303 167 VKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN 246 (461)
Q Consensus 167 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 246 (461)
.+. .|...|..++.++.+.|++++|.++|....+. .+++...+.+..+|++.++++....+. + .++.
T Consensus 1129 iKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~---~~e~~Idt~LafaYAKl~rleele~fI----~----~~n~ 1195 (1630)
T 1xi4_A 1129 IKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFI----N----GPNN 1195 (1630)
T ss_pred Hhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cccccccHHHHHHHHhhcCHHHHHHHH----h----CCCH
Confidence 776 57788889999999999999999999988774 344444446888899998888544432 2 2344
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCC
Q 038303 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG 326 (461)
Q Consensus 247 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 326 (461)
..+..+...|...|++++|..+|... ..|..+...+++.|++++|.+.+++. .+..+|..+-.+|...|
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGK 1264 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhh
Confidence 56667999999999999999999986 58999999999999999999999987 36688999999999999
Q ss_pred ChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHH--hcCChHHHHHH
Q 038303 327 LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACR--IHRNDEMFDRI 402 (461)
Q Consensus 327 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~--~~~~~~~a~~~ 402 (461)
++..|...... +..++..+..++..|.+.|.+++|+.+++.. +..| ....|+-+...++ +-++..++.++
T Consensus 1265 Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~ 1338 (1630)
T 1xi4_A 1265 EFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLEL 1338 (1630)
T ss_pred HHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999887643 3356667789999999999999999999877 4443 3335555555544 44566666666
Q ss_pred HHHHhhcCC-----CChhHHHHHHHHHhccCChhhHHHH
Q 038303 403 RQDLVNKKG-----VSVGTFALMSNTFAGADRWEDTNKI 436 (461)
Q Consensus 403 ~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~ 436 (461)
|..-....| .+...|..++..|.+.|+++.|...
T Consensus 1339 f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1339 FWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 665544333 4678899999999999999999843
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=5.3e-17 Score=153.69 Aligned_cols=389 Identities=9% Similarity=-0.042 Sum_probs=297.7
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHh----cCCHHHHHHHHhhCC-CCCceeHHHHHHHHHc----CCChHHHHHHH
Q 038303 29 ALEIHAHVIEYGHLHDIFIQNSLLHFYVT----VKDIFSAHQIFNSVV-FPDVVSWTTIISGLSK----CGFHKEAIDMF 99 (461)
Q Consensus 29 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~----~~~~~~a~~~~ 99 (461)
+...+....+.| ++..+..+-..|.. .+++++|...|++.. ..++..+..|...|.. .+++++|++.|
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 102 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWY 102 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 445555555543 66677777777777 799999999998873 3567788888888888 89999999999
Q ss_pred hcCCCCCCchhHHHHHHHhcc----cchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH----cCChhhHHHHHhcCCC
Q 038303 100 CGIDVKPNANTLVSVLSACSS----LVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIR----CGSLASCGYLFVKMPK 171 (461)
Q Consensus 100 ~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 171 (461)
++.--..+...+..+...+.. .+++++|...|+...+.| +...+..+...|.. .++.++|..+|++..+
T Consensus 103 ~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 103 KKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE 179 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 988112355666777777776 789999999999998876 56677778888887 7899999999988754
Q ss_pred -CchhHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhc----cchhhhHHHHHHHHHhhcCC
Q 038303 172 -RNVVSWTTMIGGYAE----RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS----ISALSFGKYVHSYISTRYDL 242 (461)
Q Consensus 172 -~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~----~~~~~~a~~~~~~~~~~~~~ 242 (461)
.+...+..+...|.. .+++++|..+|++..+.| +...+..+...+.. .++.++|...++...+ .+
T Consensus 180 ~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~- 253 (490)
T 2xm6_A 180 QGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE-QG- 253 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT-TT-
T ss_pred CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC-
Confidence 567788888888888 899999999999998764 34556666666664 7889999999998877 33
Q ss_pred CCcchHHHHHHHHHHh----cCCHHHHHHHHHHccCC-ChhhHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCCCH
Q 038303 243 SVSNLVGNAVINMYVK----CGDVGIAIQVFNMLAYK-DKISWSTVISGLAMN-----GCGRQALQLFSLMIINAVFPDD 312 (461)
Q Consensus 243 ~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~ 312 (461)
+...+..+...|.. .++.++|..+|++..+. +...+..+...+... +++++|...+++..+.| +.
T Consensus 254 --~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~ 328 (490)
T 2xm6_A 254 --NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DA 328 (490)
T ss_dssp --CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CH
T ss_pred --CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CH
Confidence 34566677777877 89999999999887754 667777888888877 89999999999998865 45
Q ss_pred hHHHHHHHHHHcCC---ChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhh----cCCHHHHHHHHHhCCCCchhhHHHH
Q 038303 313 VTFIALISACSHGG---LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR----AGLLEEAEAFIREMPIEAEWSVWGA 385 (461)
Q Consensus 313 ~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ 385 (461)
..+..+...|...| ++++|.+.|++..+ . .+...+..|...|.. .+++++|.++|++.-...+...+..
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~ 404 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAA-K---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQ 404 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 66677777777656 78999999999887 3 456778888888888 8999999999998822335566777
Q ss_pred HHHHHHh----cCChHHHHHHHHHHhhcCC---CChhHHHHHHHHHhccCChhhHHHHHHHH
Q 038303 386 LLNACRI----HRNDEMFDRIRQDLVNKKG---VSVGTFALMSNTFAGADRWEDTNKIRDEI 440 (461)
Q Consensus 386 l~~~~~~----~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 440 (461)
+...|.. .++.++|...|+++.+..| .++.....+...+.. +.+.|.+...+.
T Consensus 405 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~ 464 (490)
T 2xm6_A 405 LGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQY 464 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHH
Confidence 7777777 7999999999999998763 366666666655443 334444444443
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=1.5e-16 Score=152.22 Aligned_cols=372 Identities=8% Similarity=-0.008 Sum_probs=248.5
Q ss_pred CcchHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH-HhcCCHHHHHH----HHhhCC------CCCce
Q 038303 9 NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFY-VTVKDIFSAHQ----IFNSVV------FPDVV 77 (461)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~------~~~~~ 77 (461)
+...|...+..+.+.|++++|..+|+.+.+.. |+...|...+... ...|+.++|.+ +|+... .++..
T Consensus 45 ~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~ 122 (530)
T 2ooe_A 45 SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQ 122 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHH
Confidence 45568889999999999999999999999865 5777777777533 35677777665 666541 24556
Q ss_pred eHHHHHHHHHc---------CCChHHHHHHHhcC-CCCCCc---hhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChh
Q 038303 78 SWTTIISGLSK---------CGFHKEAIDMFCGI-DVKPNA---NTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII 144 (461)
Q Consensus 78 ~~~~li~~~~~---------~~~~~~a~~~~~~m-~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 144 (461)
.|...+....+ .|+++.|..+|++. . .|+. ..|..........|. ..+..++.
T Consensus 123 ~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~------------ 188 (530)
T 2ooe_A 123 IWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINI-HLAKKMIE------------ 188 (530)
T ss_dssp HHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH------------
T ss_pred HHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhch-hHHHHHHH------------
Confidence 77777776554 68899999999988 5 3543 222222111000010 00111110
Q ss_pred HHHHHHHHHHHcCChhhHHHHHhc-------CC------CCc--------hhHHHHHHHHHHhc----CCh----HHHHH
Q 038303 145 LDNAILDFYIRCGSLASCGYLFVK-------MP------KRN--------VVSWTTMIGGYAER----GFC----KEAVS 195 (461)
Q Consensus 145 ~~~~l~~~~~~~g~~~~a~~~~~~-------~~------~~~--------~~~~~~li~~~~~~----~~~----~~a~~ 195 (461)
.+.++++.|..++.. +. .|+ ...|...+...... ++. +++..
T Consensus 189 ---------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~ 259 (530)
T 2ooe_A 189 ---------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMF 259 (530)
T ss_dssp ---------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHH
T ss_pred ---------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHH
Confidence 011223333332222 11 111 23455544332222 222 37778
Q ss_pred HHHHHHhcCCCCCChhhHHHHHHHhhc-------cchhh-------hHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCC
Q 038303 196 VFQEMEKTKEAEPNEATLVNVLSACSS-------ISALS-------FGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGD 261 (461)
Q Consensus 196 ~~~~m~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 261 (461)
+|++.... .+.+...|......+.+ .|+++ .|..+++...+ .-.+.+...+..++..+.+.|+
T Consensus 260 ~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~-~~~p~~~~l~~~~~~~~~~~g~ 336 (530)
T 2ooe_A 260 AYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS-TLLKKNMLLYFAYADYEESRMK 336 (530)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT-TTCSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHhcCC
Confidence 88888875 45566677777666664 67776 88888888865 1233456788888999999999
Q ss_pred HHHHHHHHHHccC--C-Ch-hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHH-HHHcCCChHHHHHHHH
Q 038303 262 VGIAIQVFNMLAY--K-DK-ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALIS-ACSHGGLVDQGLILFK 336 (461)
Q Consensus 262 ~~~a~~~~~~~~~--~-~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~ 336 (461)
+++|..+|+++.+ | +. ..|...+..+.+.|++++|.++|++..+... .+...|..... .+...|+.++|..+|+
T Consensus 337 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e 415 (530)
T 2ooe_A 337 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFE 415 (530)
T ss_dssp HHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 9999999988763 3 32 4788888888899999999999999987532 22333332222 2346899999999999
Q ss_pred HhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC----CCCch--hhHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 038303 337 AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM----PIEAE--WSVWGALLNACRIHRNDEMFDRIRQDLVNKK 410 (461)
Q Consensus 337 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 410 (461)
...+. .+.+...|..++..+.+.|+.++|..+|++. +..|+ ...|...+......|+.+.+..+.+++.+..
T Consensus 416 ~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 416 LGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 88873 3446788899999999999999999999988 22332 3377777888888999999999999998866
Q ss_pred C
Q 038303 411 G 411 (461)
Q Consensus 411 ~ 411 (461)
|
T Consensus 494 p 494 (530)
T 2ooe_A 494 R 494 (530)
T ss_dssp H
T ss_pred c
Confidence 6
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=1.2e-18 Score=158.54 Aligned_cols=261 Identities=8% Similarity=-0.150 Sum_probs=208.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHH
Q 038303 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAV 252 (461)
Q Consensus 173 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 252 (461)
+...|..+...+.+.|++++|..+|+++.+. .+.+..++..+...+...|+++.|...++.+.+. .+.+..++..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHH
Confidence 4556888888888999999999999988875 4556778888888888899999999999888772 23456778889
Q ss_pred HHHHHhcCCHHHHHHHHHHccCCC-------------hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CCHhHHHHH
Q 038303 253 INMYVKCGDVGIAIQVFNMLAYKD-------------KISWSTVISGLAMNGCGRQALQLFSLMIINAVF-PDDVTFIAL 318 (461)
Q Consensus 253 i~~~~~~g~~~~a~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~l 318 (461)
...|...|++++|...|+++.+.+ ...+..+...+...|++++|...++++.+.... ++..++..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 999999999999999998876421 223344578899999999999999999986432 157889999
Q ss_pred HHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCCh
Q 038303 319 ISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRND 396 (461)
Q Consensus 319 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 396 (461)
...+...|++++|...|+++.+ ..+.+..++..+..+|.+.|++++|...|+++ ...| +...+..+...|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALT--VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 9999999999999999999987 34456789999999999999999999999998 4344 466788888899999999
Q ss_pred HHHHHHHHHHhhcCCC------------ChhHHHHHHHHHhccCChhhHHHHHHH
Q 038303 397 EMFDRIRQDLVNKKGV------------SVGTFALMSNTFAGADRWEDTNKIRDE 439 (461)
Q Consensus 397 ~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 439 (461)
++|...++++.+..|. +..+|..+..++...|+.+.|.++.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999985544 367899999999999999998887754
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=3e-18 Score=155.96 Aligned_cols=262 Identities=10% Similarity=-0.037 Sum_probs=168.2
Q ss_pred CchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCC---CchhHHHHHHHH
Q 038303 107 NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK---RNVVSWTTMIGG 183 (461)
Q Consensus 107 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~ 183 (461)
+...+..+...+.+.|++++|...|+.+++..+. +..++..+...+.+.|++++|+..|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4556778888888888889999998888887654 678888889999999999999999888764 457788899999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCh-hhH----------HHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHH
Q 038303 184 YAERGFCKEAVSVFQEMEKTKEAEPNE-ATL----------VNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAV 252 (461)
Q Consensus 184 ~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~----------~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 252 (461)
|...|++++|...|+++.+. .|+. ..+ ..+...+...|++++|...++.+.+.....++..++..+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ---NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh---CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 99999999999999998874 3332 222 223556666777777777777776632222245566666
Q ss_pred HHHHHhcCCHHHHHHHHHHccC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChH
Q 038303 253 INMYVKCGDVGIAIQVFNMLAY---KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVD 329 (461)
Q Consensus 253 i~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 329 (461)
...|...|++++|.+.|+++.+ .+..+|..+..++...|++++|...+++..+... .+..++..+..+|...|+++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHH
Confidence 6666666666666666666542 2455666666666666666666666666665421 13455666666666666666
Q ss_pred HHHHHHHHhHhhcCC----------CCCcchHHHHHHHHhhcCCHHHHHHHHHh
Q 038303 330 QGLILFKAMSTVYEI----------VPQMQHYACVVDMYGRAGLLEEAEAFIRE 373 (461)
Q Consensus 330 ~a~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 373 (461)
+|...|+++.+...- ..+...|..+..++...|+.+.+.+..++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 666666665541100 00244555555555555555555555443
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=1.6e-17 Score=145.32 Aligned_cols=268 Identities=11% Similarity=0.002 Sum_probs=191.0
Q ss_pred HHHcCChhhHHHHHhcCCC--Cc--hhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhh
Q 038303 153 YIRCGSLASCGYLFVKMPK--RN--VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228 (461)
Q Consensus 153 ~~~~g~~~~a~~~~~~~~~--~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 228 (461)
....|++++|+..+++... |+ ......+..+|...|+++.|+..++. . .+|+..++..+...+...++.+.
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~-~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----S-SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----T-SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----c-CChhHHHHHHHHHHHcCCCcHHH
Confidence 4445666666666655543 22 12334455666666666666654432 1 44555566666666666666666
Q ss_pred HHHHHHHHHhhcCCCC-cchHHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 038303 229 GKYVHSYISTRYDLSV-SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINA 307 (461)
Q Consensus 229 a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 307 (461)
|...++.+.. .+..| +...+..+...+...|++++|.+.+++ ..+...+..++..+.+.|++++|.+.++++.+..
T Consensus 84 A~~~l~~ll~-~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 84 IVAELDREMS-RSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHHHH-SCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHh-cccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 6666666655 34333 444566777889999999999999998 4577889999999999999999999999998864
Q ss_pred CCCCHhHH---HHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhH
Q 038303 308 VFPDDVTF---IALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSV 382 (461)
Q Consensus 308 ~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 382 (461)
|+.... ...+..+...|++++|..+|+++.+ ..+.+...++.+..++.+.|++++|...+++. ...| +..+
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD--KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 554322 2233445567999999999999998 35678889999999999999999999999997 3334 5567
Q ss_pred HHHHHHHHHhcCChHH-HHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHH
Q 038303 383 WGALLNACRIHRNDEM-FDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKI 436 (461)
Q Consensus 383 ~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 436 (461)
+..++..+...|+.++ +.++++++.+..|.++.+.. ...+.+.++++..-
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHH
Confidence 8888888888888865 67899999999999886654 34455555555443
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=2.7e-17 Score=155.12 Aligned_cols=383 Identities=8% Similarity=-0.077 Sum_probs=200.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhCC-----------C-CCceeHHHHHHHHHcCCChHHHHHHHhcC---------
Q 038303 44 DIFIQNSLLHFYVTVKDIFSAHQIFNSVV-----------F-PDVVSWTTIISGLSKCGFHKEAIDMFCGI--------- 102 (461)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----------~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m--------- 102 (461)
....|+.|..++...|++++|++.|++.. . ....+|+.+..+|...|++++|...+++.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 34567777777777788888777776541 1 12345667777777777777777766654
Q ss_pred CCCCC-chhHHHHHHHhc--ccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHH---HHcCChhhHHHHHhcCCC---Cc
Q 038303 103 DVKPN-ANTLVSVLSACS--SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFY---IRCGSLASCGYLFVKMPK---RN 173 (461)
Q Consensus 103 ~~~p~-~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~---~~ 173 (461)
...++ ..++.....++. ..+++++|...|++.++..+. +...+..+..++ ...++.++|+..+++..+ .+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 11121 233443333333 234567777777776665443 344444443332 334555556655554432 23
Q ss_pred hhHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHH
Q 038303 174 VVSWTTMIGGYAE----RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVG 249 (461)
Q Consensus 174 ~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 249 (461)
..++..+...+.. .+++++|.+++++.... .+.+...+..+...+...|+++.|...++...+. .+.+..++
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 284 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLH 284 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHH
Confidence 3344444333332 34555666666666553 3344445555555666666666666666665541 12223334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChH
Q 038303 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVD 329 (461)
Q Consensus 250 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 329 (461)
..+...|...+....+ ..... ........+.+++|...+++..+... .+..++..+...+...|+++
T Consensus 285 ~~lg~~y~~~~~~~~~------~~~~~------~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMN------LRENG------MYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHHHHHHHHHHHH------C------------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhhh------HHHHH------HHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHH
Confidence 4444333221110000 00000 00001112335678888888776532 24466778888889999999
Q ss_pred HHHHHHHHhHhhcCCCCCc--chHHHHHH-HHhhcCCHHHHHHHHHhC-CCCchhhHHHHHHHHHHhcCChHHHHHHHHH
Q 038303 330 QGLILFKAMSTVYEIVPQM--QHYACVVD-MYGRAGLLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDEMFDRIRQD 405 (461)
Q Consensus 330 ~a~~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 405 (461)
+|+..|++..+ ....+.. ..+..+.. .+...|+.++|+..+++. .+.|+.... .+....+..++++
T Consensus 352 ~A~~~~~kaL~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~---------~~~~~~l~~~~~~ 421 (472)
T 4g1t_A 352 EAEYYFQKEFS-KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK---------EKMKDKLQKIAKM 421 (472)
T ss_dssp HHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH---------HHHHHHHHHHHHH
Confidence 99999988876 2222221 12222322 234678899999998887 555654332 2233456677788
Q ss_pred HhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcCCccccCcccc
Q 038303 406 LVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKTGCSWI 454 (461)
Q Consensus 406 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 454 (461)
..+..|.++.+|..++.+|...|++++|++.+++..+.|-......+|+
T Consensus 422 ~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 422 RLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 8888999999999999999999999999999999998876655555553
No 28
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=6e-16 Score=146.44 Aligned_cols=355 Identities=10% Similarity=-0.047 Sum_probs=291.4
Q ss_pred CCCCceeHHHHHHHHHc----CCChHHHHHHHhcCCCCCCchhHHHHHHHhcc----cchhHHHHHHHHHHHhhcCCCCh
Q 038303 72 VFPDVVSWTTIISGLSK----CGFHKEAIDMFCGIDVKPNANTLVSVLSACSS----LVSHKLGKAIHAHSLRNLNENNI 143 (461)
Q Consensus 72 ~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 143 (461)
...++..+..+...|.. .+++++|++.|++.--..+...+..+...+.. .++.++|.+.|++..+.| +.
T Consensus 35 ~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 35 ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 34567777788888887 89999999999988112456677778888877 899999999999998876 66
Q ss_pred hHHHHHHHHHHH----cCChhhHHHHHhcCCC-CchhHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCChhhHH
Q 038303 144 ILDNAILDFYIR----CGSLASCGYLFVKMPK-RNVVSWTTMIGGYAE----RGFCKEAVSVFQEMEKTKEAEPNEATLV 214 (461)
Q Consensus 144 ~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 214 (461)
..+..|...|.. .+++++|..+|++..+ .+...+..|...|.. .+++++|.+.|++..+.| +...+.
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~----~~~a~~ 187 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG----NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHH
Confidence 777788888888 8899999999998765 466778888888887 789999999999998864 566777
Q ss_pred HHHHHhhc----cchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHh----cCCHHHHHHHHHHccCC-ChhhHHHHHH
Q 038303 215 NVLSACSS----ISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVK----CGDVGIAIQVFNMLAYK-DKISWSTVIS 285 (461)
Q Consensus 215 ~~l~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~l~~ 285 (461)
.+...+.. .++.++|...++...+ .+ +...+..+...|.. .++.++|..+|++..+. +...+..+..
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 263 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSAT-SG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 77777776 8999999999999887 43 45567778888886 88999999999987754 6677777877
Q ss_pred HHHh----cCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcC-----CChHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 038303 286 GLAM----NGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG-----GLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356 (461)
Q Consensus 286 ~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 356 (461)
.+.. .+++++|++.|++..+.| +...+..+...|... +++++|...|++..+ .+ +...+..+..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~ 336 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE-QG---DATAQANLGA 336 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-TT---CHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-cC---CHHHHHHHHH
Confidence 8877 899999999999998764 456677777778776 899999999999988 33 4456777888
Q ss_pred HHhhcC---CHHHHHHHHHhCCCCchhhHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhc---
Q 038303 357 MYGRAG---LLEEAEAFIREMPIEAEWSVWGALLNACRI----HRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAG--- 426 (461)
Q Consensus 357 ~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 426 (461)
.|.+.| ++++|.++|++.-...+...+..+...|.. .+++++|...+++..+.. ++..+..++..|.+
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence 887766 789999999998323566677788888887 899999999999998754 57789999999998
Q ss_pred -cCChhhHHHHHHHHHHcCCc
Q 038303 427 -ADRWEDTNKIRDEIRRMGLK 446 (461)
Q Consensus 427 -~g~~~~A~~~~~~m~~~g~~ 446 (461)
.+++++|...+++..+.|..
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHCCCC
Confidence 89999999999999988743
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=2.3e-17 Score=147.51 Aligned_cols=258 Identities=8% Similarity=-0.101 Sum_probs=180.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHH
Q 038303 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINM 255 (461)
Q Consensus 176 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 255 (461)
.+..+...+...|++++|..+|+++.+. .+.+...+..+...+...|+++.|...++.+.+. .+.+..++..+...
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVS 98 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHHHH
Confidence 3444444555555555555555555443 2334444444555555555555555555555441 22234455556666
Q ss_pred HHhcCCHHHHHHHHHHccCC---ChhhHHHH--------------HH-HHHhcCChHHHHHHHHHHHhcCCCCCHhHHHH
Q 038303 256 YVKCGDVGIAIQVFNMLAYK---DKISWSTV--------------IS-GLAMNGCGRQALQLFSLMIINAVFPDDVTFIA 317 (461)
Q Consensus 256 ~~~~g~~~~a~~~~~~~~~~---~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 317 (461)
|...|++++|.+.++++.+. +...+..+ .. .+...|++++|...++++.+... .+...+..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHH
Confidence 66666666666666655421 22222222 22 36778899999999999988643 36788888
Q ss_pred HHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCC
Q 038303 318 LISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRN 395 (461)
Q Consensus 318 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 395 (461)
+...+...|++++|...++++.+ ..+.+...+..+...+...|++++|...++++ ...| +...+..+...+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVE--LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999987 23455778899999999999999999999987 3333 46678888888999999
Q ss_pred hHHHHHHHHHHhhcCCC------------ChhHHHHHHHHHhccCChhhHHHHHHHH
Q 038303 396 DEMFDRIRQDLVNKKGV------------SVGTFALMSNTFAGADRWEDTNKIRDEI 440 (461)
Q Consensus 396 ~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 440 (461)
+++|...++++.+..|. +..++..++.++.+.|++++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999998777 7889999999999999999999998754
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=1.3e-16 Score=142.67 Aligned_cols=329 Identities=9% Similarity=-0.042 Sum_probs=169.4
Q ss_pred CCcchHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCceeHHHHHHH
Q 038303 8 YNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--PDVVSWTTIISG 85 (461)
Q Consensus 8 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~ 85 (461)
+++.+|+.+..++...|++++|.+.|... +|+.+|..++..+...|++++|...++...+ +++.+.+.++.+
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~ 103 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFA 103 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHH
Confidence 44569999999999999999999999652 5777999999999999999999997776633 556789999999
Q ss_pred HHcCCChHHHHHHHhcCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHH
Q 038303 86 LSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYL 165 (461)
Q Consensus 86 ~~~~~~~~~a~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 165 (461)
|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+ ..|..++.++.+.|++++|.+.
T Consensus 104 Y~Klg~l~e~e~f~~----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea 170 (449)
T 1b89_A 104 LAKTNRLAELEEFIN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDG 170 (449)
T ss_dssp -----CHHHHTTTTT----CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHhCCHHHHHHHHc----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHH
Confidence 999999999998885 478789999999999999999999999966 4789999999999999999999
Q ss_pred HhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCc
Q 038303 166 FVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS 245 (461)
Q Consensus 166 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 245 (461)
+.++. ++.+|..++.+|...|+++.|......+ ...+.-...++..|.+.|.++++..+++.... .. +..
T Consensus 171 ~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~-le-~ah 240 (449)
T 1b89_A 171 ARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALG-LE-RAH 240 (449)
T ss_dssp HHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-ST-TCC
T ss_pred HHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC-Cc-HHH
Confidence 99994 8899999999999999999996655542 23333455788999999999999999998865 22 444
Q ss_pred chHHHHHHHHHHhc--CCHHHHHHHHHHccC--------CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHH
Q 038303 246 NLVGNAVINMYVKC--GDVGIAIQVFNMLAY--------KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTF 315 (461)
Q Consensus 246 ~~~~~~li~~~~~~--g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 315 (461)
...|+-|.-+|++- +++.+.++.|..-.. .+...|..+.-.|...++++.|... |.++ .|+...-
T Consensus 241 ~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~ 315 (449)
T 1b89_A 241 MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKE 315 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHS--TTTTCCH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhC--Chhhhhh
Confidence 55667776666653 456666666643331 2677899999999999999988774 4442 2343334
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCC
Q 038303 316 IALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMP 375 (461)
Q Consensus 316 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 375 (461)
..+.....+..+.+--.+...-... -.+...+-|+.++...=+...+.++|++.+
T Consensus 316 ~~f~~~~~kv~n~elyYkai~fyl~-----~~p~~l~~ll~~l~~~ld~~r~v~~~~~~~ 370 (449)
T 1b89_A 316 GQFKDIITKVANVELYYRAIQFYLE-----FKPLLLNDLLMVLSPRLDHTRAVNYFSKVK 370 (449)
T ss_dssp HHHHHHHHHCSSTHHHHHHHHHHHH-----HCGGGHHHHHHHHGGGCCHHHHHHHHHHTT
T ss_pred HHHHHHHhchhHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHhccCcHHHHHHHHHcC
Confidence 4444445555555543333332222 223345666666666667777777777664
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=8.9e-17 Score=143.66 Aligned_cols=258 Identities=8% Similarity=-0.069 Sum_probs=193.4
Q ss_pred CcchHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhC---CCCCceeHHHHHHH
Q 038303 9 NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV---VFPDVVSWTTIISG 85 (461)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~li~~ 85 (461)
+...+......+...|++++|..+|+.+.+.... +..++..+...+...|++++|...|++. .+.+...+..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 5566788888999999999999999999987643 6778888999999999999999999987 34567788889999
Q ss_pred HHcCCChHHHHHHHhcC-CCCCCchh-HHHH--------------HH-HhcccchhHHHHHHHHHHHhhcCCCChhHHHH
Q 038303 86 LSKCGFHKEAIDMFCGI-DVKPNANT-LVSV--------------LS-ACSSLVSHKLGKAIHAHSLRNLNENNIILDNA 148 (461)
Q Consensus 86 ~~~~~~~~~a~~~~~~m-~~~p~~~~-~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 148 (461)
+...|++++|++.+++. ...|+... +..+ .. .+...|++++|...++.+.+..+. +..++..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHH
Confidence 99999999999999988 44554333 3332 22 377889999999999999887654 6778888
Q ss_pred HHHHHHHcCChhhHHHHHhcCCC---CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccch
Q 038303 149 ILDFYIRCGSLASCGYLFVKMPK---RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225 (461)
Q Consensus 149 l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~ 225 (461)
+...+.+.|++++|...++++.+ .+..+|..+...+...|++++|...++++.+. .+.+...+..+...+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcc
Confidence 88888899999999888887754 45677888888888888999998888888774 34455666666666777777
Q ss_pred hhhHHHHHHHHHhhcCCCC-----------cchHHHHHHHHHHhcCCHHHHHHHHHH
Q 038303 226 LSFGKYVHSYISTRYDLSV-----------SNLVGNAVINMYVKCGDVGIAIQVFNM 271 (461)
Q Consensus 226 ~~~a~~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~ 271 (461)
++.|...++.+.+... .. +..++..+..++.+.|+.++|..+++.
T Consensus 256 ~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQV-GGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHHHHHT-TSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCC-ccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 7777777766655211 11 234555555555666666665555543
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=4e-16 Score=147.08 Aligned_cols=381 Identities=9% Similarity=-0.063 Sum_probs=236.2
Q ss_pred CcchHHHHHHHHHhhCCHHHHHHHHHHHHHh-----C--CCc-cHHHHHHHHHHHHhcCCHHHHHHHHhhCC-------C
Q 038303 9 NHYTFTQALKACSLAHPHQKALEIHAHVIEY-----G--HLH-DIFIQNSLLHFYVTVKDIFSAHQIFNSVV-------F 73 (461)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~ 73 (461)
....|+.+...+...|+.++|++.|++..+. + ..| ...+|+.+..+|...|++++|...+++.. .
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4566999999999999999999999987653 1 122 35688999999999999999999988661 1
Q ss_pred ----CCceeHHHHHHHHHc--CCChHHHHHHHhcC-CCCCCch-hHHHHHHH---hcccchhHHHHHHHHHHHhhcCCCC
Q 038303 74 ----PDVVSWTTIISGLSK--CGFHKEAIDMFCGI-DVKPNAN-TLVSVLSA---CSSLVSHKLGKAIHAHSLRNLNENN 142 (461)
Q Consensus 74 ----~~~~~~~~li~~~~~--~~~~~~a~~~~~~m-~~~p~~~-~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~ 142 (461)
....++..+..++.+ .+++++|++.|++. .+.|+.. .+..+..+ +...++.++|.+.+++.++..+. +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-N 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-C
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-c
Confidence 123445555555544 45799999999998 7777644 34444444 33456677888999988887654 5
Q ss_pred hhHHHHHHHHHHH----cCChhhHHHHHhcCCC---CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHH
Q 038303 143 IILDNAILDFYIR----CGSLASCGYLFVKMPK---RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVN 215 (461)
Q Consensus 143 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 215 (461)
..++..+...+.. .|++++|...+++... .+..++..+...|...|++++|...+++..+. .|.+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHH
Confidence 5666666555544 4678899999987653 56778899999999999999999999999884 3334455555
Q ss_pred HHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHcc---CCChhhHHHHHHHHHhcCC
Q 038303 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA---YKDKISWSTVISGLAMNGC 292 (461)
Q Consensus 216 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 292 (461)
+...+...+....+... ..........+..+.|...++... ..+...+..+...+...|+
T Consensus 287 lg~~y~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRE-----------------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHHHHC-----------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhHHH-----------------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhcc
Confidence 54444322111110000 001111112234567777777655 3356788899999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCHh--HHHHHHH-HHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHH
Q 038303 293 GRQALQLFSLMIINAVFPDDV--TFIALIS-ACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEA 369 (461)
Q Consensus 293 ~~~a~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 369 (461)
+++|++.|++..+....|... .+..+.. .....|++++|+..|++..+ +.|+....... ...+.+
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~ 417 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQK 417 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHH
Confidence 999999999998854433321 2222222 24568999999999998876 44554332222 223334
Q ss_pred HHHhC-C-CCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHH
Q 038303 370 FIREM-P-IEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421 (461)
Q Consensus 370 ~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 421 (461)
++++. . .+.+..+|..+...|...|++++|++.|+++++..|.++.+...++
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 44443 2 2345668888888999999999999999999998777766665543
No 33
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.75 E-value=1.6e-14 Score=144.12 Aligned_cols=347 Identities=10% Similarity=0.018 Sum_probs=272.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-----ceeHHHHHHHHHcCCChHHHHHHHhcCCCCCCchhHHHHHHHhc
Q 038303 46 FIQNSLLHFYVTVKDIFSAHQIFNSVV-FPD-----VVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACS 119 (461)
Q Consensus 46 ~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~p~~~~~~~ll~~~~ 119 (461)
.--...++.|...|.+.+|.+++++++ .|+ ...-+.++.+..+. +..+..+..+..+ .....-+...|.
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd----~~d~~eIA~Iai 1060 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD----NYDAPDIANIAI 1060 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh----hccHHHHHHHHH
Confidence 334566788889999999999999984 332 24456677666666 5566666666552 222444777788
Q ss_pred ccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHH
Q 038303 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQE 199 (461)
Q Consensus 120 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 199 (461)
..|.+++|..+|++... .....+.+ +-..|++++|.++.++.. +..+|..+..++.+.|++++|++.|.+
T Consensus 1061 ~lglyEEAf~IYkKa~~-----~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV-----NTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred hCCCHHHHHHHHHHcCC-----HHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 99999999999998631 12222223 237789999999999885 467899999999999999999999966
Q ss_pred HHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCChhh
Q 038303 200 MEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS 279 (461)
Q Consensus 200 m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 279 (461)
. .|...|..++.++.+.|+++++.+.+....+ .. +++.+.+.++.+|++.+++++...+. ..++...
T Consensus 1131 A-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk-~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad 1197 (1630)
T 1xi4_A 1131 A-------DDPSSYMEVVQAANTSGNWEELVKYLQMARK-KA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAH 1197 (1630)
T ss_pred c-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHH
Confidence 3 4677888899999999999999999998877 33 34344456999999999998655543 4567777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHh
Q 038303 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359 (461)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 359 (461)
|..+...|...|++++|..+|... ..|..+..++++.|+++.|.+.+++. .+..+|..+..+|.
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACV 1261 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHh
Confidence 888999999999999999999985 47999999999999999999999877 34588999999999
Q ss_pred hcCCHHHHHHHHHhCCCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhcc--CChhhHHHHH
Q 038303 360 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA--DRWEDTNKIR 437 (461)
Q Consensus 360 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~ 437 (461)
..|++..|......+.. +...+..++..|.+.|.+++|+.+++......+.....|..++.+|++. ++..++.+.|
T Consensus 1262 e~~Ef~LA~~cgl~Iiv--~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLHIVV--HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred hhhHHHHHHHHHHhhhc--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999998775433 4445668889999999999999999999998888888998888888765 4555555555
Q ss_pred H
Q 038303 438 D 438 (461)
Q Consensus 438 ~ 438 (461)
.
T Consensus 1340 ~ 1340 (1630)
T 1xi4_A 1340 W 1340 (1630)
T ss_pred H
Confidence 4
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=1.9e-16 Score=138.42 Aligned_cols=248 Identities=9% Similarity=-0.042 Sum_probs=202.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCh--hhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHh
Q 038303 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNE--ATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVK 258 (461)
Q Consensus 181 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 258 (461)
|+.....|++..|+..+++... ..|+. .....+..++...|+++.|...++. ..+|+...+..+...+..
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~ 77 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLAS 77 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcC
Confidence 3456678999999999988755 44543 3556678899999999999875543 345677788889999999
Q ss_pred cCCHHHHHHHHHHcc----CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHH
Q 038303 259 CGDVGIAIQVFNMLA----YK-DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLI 333 (461)
Q Consensus 259 ~g~~~~a~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 333 (461)
.++.++|.+.++++. .| +...+..+...+...|++++|++.+++ ..+...+..+...+.+.|++++|.+
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999874 24 456677778899999999999999987 4577889999999999999999999
Q ss_pred HHHHhHhhcCCCCCcchH---HHHHHHHhhcCCHHHHHHHHHhC--CCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 038303 334 LFKAMSTVYEIVPQMQHY---ACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVN 408 (461)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 408 (461)
.|+.+.+. .|+.... ..++..+...|++++|..+|+++ ..+++...++.+..++.+.|++++|+..++++.+
T Consensus 152 ~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 152 ELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999882 3553211 22334445569999999999999 3345677888899999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHhccCChhh-HHHHHHHHHHcCC
Q 038303 409 KKGVSVGTFALMSNTFAGADRWED-TNKIRDEIRRMGL 445 (461)
Q Consensus 409 ~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~g~ 445 (461)
..|.++.++..++..+...|+.++ +.++++++.+...
T Consensus 229 ~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999976 5789998877543
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=1e-18 Score=168.55 Aligned_cols=165 Identities=12% Similarity=0.060 Sum_probs=128.0
Q ss_pred CCCcchHHHHHHHHHHhcCCHHHHHHHHHHcc-------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhH
Q 038303 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA-------YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVT 314 (461)
Q Consensus 242 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 314 (461)
...-..+|++||++|++.|++++|.++|++|. .||+.|||+||.+||+.|++++|.++|++|.+.|+.||..|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 33445689999999999999999999997754 57999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCh-HHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCC----chhhHHHHHHHH
Q 038303 315 FIALISACSHGGLV-DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIE----AEWSVWGALLNA 389 (461)
Q Consensus 315 ~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----p~~~~~~~l~~~ 389 (461)
|+++|.++|+.|+. ++|.++|++|.+ .|+.||..+|++++....+.+-++.+.++...+.-. |...+...|...
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHH
Confidence 99999999999985 789999999999 799999999999987776654443333332223111 223444555566
Q ss_pred HHhcCC---------hHHHHHHHHHHh
Q 038303 390 CRIHRN---------DEMFDRIRQDLV 407 (461)
Q Consensus 390 ~~~~~~---------~~~a~~~~~~~~ 407 (461)
|.+.+. .++....|++-.
T Consensus 282 ~s~d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 282 YAKDGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp HCCCSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred HccCCCCcCccccCCHHHHHHHHHHHH
Confidence 666552 355556665544
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=4e-18 Score=164.48 Aligned_cols=147 Identities=12% Similarity=0.099 Sum_probs=122.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHH---hcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHH
Q 038303 277 KISWSTVISGLAMNGCGRQALQLFSLMI---INAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYAC 353 (461)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~---~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 353 (461)
..||+++|.+||+.|++++|.++|++|. ..|+.||..|||+||.+||+.|++++|.++|++|.+ .|+.||..||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~-~G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCcHHHHHH
Confidence 4689999999999999999999998876 458999999999999999999999999999999999 899999999999
Q ss_pred HHHHHhhcCCH-HHHHHHHHhC---CCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC------ChhHHHHHHHH
Q 038303 354 VVDMYGRAGLL-EEAEAFIREM---PIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV------SVGTFALMSNT 423 (461)
Q Consensus 354 l~~~~~~~g~~-~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~ 423 (461)
||.++++.|+. ++|.++|++| ++.||..+|+.++.++.+.+ .++..+++.....+ ...+...|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHhCcccCCCCCCcccccchHHHHHH
Confidence 99999999985 7899999999 99999999999987665553 33333444332211 23345566667
Q ss_pred HhccC
Q 038303 424 FAGAD 428 (461)
Q Consensus 424 ~~~~g 428 (461)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 77655
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.69 E-value=9.1e-15 Score=136.29 Aligned_cols=378 Identities=10% Similarity=-0.019 Sum_probs=205.6
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCH---HHHHHHHhhCCCCCceeHHHHHHHHHcCC--
Q 038303 16 ALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDI---FSAHQIFNSVVFPDVVSWTTIISGLSKCG-- 90 (461)
Q Consensus 16 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~~-- 90 (461)
+...+.+.|++++|.+.|+...+.|. +..+..|-..|...|+. ++|...|++....++..+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 55667788899999999999888763 23334455555666777 88888888886557777777777555554
Q ss_pred ---ChHHHHHHHhcCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChh----hHH
Q 038303 91 ---FHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLA----SCG 163 (461)
Q Consensus 91 ---~~~~a~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~a~ 163 (461)
++++|++.|++.--.-+...+..+...+...+..+.+.+.++.+.+.....+......+...|...+.++ .+.
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred CCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 6778888887760011222555566666555544433333333332221223445555666666666433 344
Q ss_pred HHHhcCCCCchhHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhc
Q 038303 164 YLFVKMPKRNVVSWTTMIGGYAERG---FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY 240 (461)
Q Consensus 164 ~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~ 240 (461)
.+++...+.+...+..|...|.+.| +.++|++.|++..+.| +++...+
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~--------------------------- 216 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRV--------------------------- 216 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHH---------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHH---------------------------
Confidence 4455555555556667777777777 6777777777766653 2222222
Q ss_pred CCCCcchHHHHHHHHHHhc----CCHHHHHHHHHHccCCChhhHHHHHHH-H--HhcCChHHHHHHHHHHHhcCCCCCHh
Q 038303 241 DLSVSNLVGNAVINMYVKC----GDVGIAIQVFNMLAYKDKISWSTVISG-L--AMNGCGRQALQLFSLMIINAVFPDDV 313 (461)
Q Consensus 241 ~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~g~~p~~~ 313 (461)
..|...|... ++.++|..+|+.....+...+..+... + ...+++++|.+.|++..+.| +..
T Consensus 217 ---------~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~ 284 (452)
T 3e4b_A 217 ---------DSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPR 284 (452)
T ss_dssp ---------HHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHH
T ss_pred ---------HHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 2333333322 466666666666552244555555554 3 34677777777777777655 455
Q ss_pred HHHHHHHHHHcCC-----ChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhh----cCCHHHHHHHHHhCCCCchhhHHH
Q 038303 314 TFIALISACSHGG-----LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR----AGLLEEAEAFIREMPIEAEWSVWG 384 (461)
Q Consensus 314 ~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~ 384 (461)
.+..+...|. .| ++++|...|++.. +.++..+..|...|.. ..++++|..+|++.-...+.....
T Consensus 285 A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~ 358 (452)
T 3e4b_A 285 AELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADF 358 (452)
T ss_dssp HHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHH
T ss_pred HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHH
Confidence 5555555555 33 7777777776654 3445556666666655 337777888877772223344445
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 038303 385 ALLNACRI----HRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 385 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 443 (461)
.+...|.. ..+.+.|...+++..+..++........+......++..+|.++.++..+.
T Consensus 359 ~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 359 AIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 55555543 457788888888887765544444444444444556677777777776443
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.68 E-value=4.6e-15 Score=123.90 Aligned_cols=196 Identities=11% Similarity=-0.016 Sum_probs=154.4
Q ss_pred CCcchHHHHHHHHHHhcCCHHHHHHHHHHccCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHH
Q 038303 243 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALI 319 (461)
Q Consensus 243 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 319 (461)
+++...+..+...+.+.|++++|...|++..+. +...|..+...+.+.|++++|+..+++..+... .+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 456667788888899999999999999887643 567888889999999999999999999988542 2457788888
Q ss_pred HHHHcC-----------CChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCchhhHHHHHH
Q 038303 320 SACSHG-----------GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALL 387 (461)
Q Consensus 320 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 387 (461)
..+... |++++|+..|++..+ .-+-+...+..+...+...|++++|...|++. ....+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 888888 999999999999987 23345778888999999999999999999988 2226777888889
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHH
Q 038303 388 NACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIR 441 (461)
Q Consensus 388 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 441 (461)
..+...|++++|+..++++.+..|.++.++..++.++.+.|++++|...+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998764
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=5.3e-15 Score=127.23 Aligned_cols=220 Identities=9% Similarity=-0.044 Sum_probs=145.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHH
Q 038303 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVIN 254 (461)
Q Consensus 175 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 254 (461)
..|..+...+...|++++|..+|++..+.. .+.. ++..+..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~------------------------------------~~~~~~~ 46 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDIT------------------------------------YLNNRAA 46 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTH------------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHH------------------------------------HHHHHHH
Confidence 455666666666677777777766666541 3344 4445555
Q ss_pred HHHhcCCHHHHHHHHHHccCC---C-------hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHc
Q 038303 255 MYVKCGDVGIAIQVFNMLAYK---D-------KISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH 324 (461)
Q Consensus 255 ~~~~~g~~~~a~~~~~~~~~~---~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 324 (461)
+|...|++++|.+.+++..+. + ...|..+...+...|++++|...+++..+. .|+. ..+..
T Consensus 47 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~ 117 (258)
T 3uq3_A 47 AEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTK 117 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHH
Confidence 555555555555555544421 1 355666667777777777777777777663 3342 23445
Q ss_pred CCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CC-CchhhHHHHHHHHHHhcCChHHHHHH
Q 038303 325 GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PI-EAEWSVWGALLNACRIHRNDEMFDRI 402 (461)
Q Consensus 325 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~ 402 (461)
.|++++|...++.+.. ..+.+...+..+...+...|++++|...++++ .. +.+...+..+...+...|++++|+..
T Consensus 118 ~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 195 (258)
T 3uq3_A 118 LRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD 195 (258)
T ss_dssp HHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 5667777777777765 22334566677777777788888888877776 22 23455667777777888888888888
Q ss_pred HHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcC
Q 038303 403 RQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444 (461)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 444 (461)
++++.+..|.++.++..++.++.+.|++++|...+++..+..
T Consensus 196 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 196 CNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 888888778788888888888888888888888888776543
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=8e-15 Score=126.08 Aligned_cols=243 Identities=10% Similarity=-0.035 Sum_probs=160.7
Q ss_pred ChhHHHHHHHHHHHcCChhhHHHHHhcCCC--CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 038303 142 NIILDNAILDFYIRCGSLASCGYLFVKMPK--RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219 (461)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~ 219 (461)
....+..+...+...|++++|...|++..+ .+..+|..+..++...|++++|...+++..+.. |+..
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~-------- 72 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQG---REMR-------- 72 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHTT--------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC---cccc--------
Confidence 345778899999999999999999987754 677889999999999999999999999988742 2210
Q ss_pred hhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHH
Q 038303 220 CSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQL 299 (461)
Q Consensus 220 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 299 (461)
........++..+...|...|++++|...|++..+.+.. ...+...|++++|...
T Consensus 73 --------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 73 --------------------ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKK 127 (258)
T ss_dssp --------------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHH
T ss_pred --------------------cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHH
Confidence 000000233344555555555555555555554421111 1234455667777777
Q ss_pred HHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc
Q 038303 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA 378 (461)
Q Consensus 300 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 378 (461)
++++..... .+...+..+...+...|++++|...++++.+ ..+.+...+..+...+.+.|++++|...+++. ...|
T Consensus 128 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 128 AEAEAYVNP-EKAEEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCc-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 777666421 1335566666677777777777777777766 22345666777777777777777777777776 2223
Q ss_pred -hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcC------CCChhHHHHHHHH
Q 038303 379 -EWSVWGALLNACRIHRNDEMFDRIRQDLVNKK------GVSVGTFALMSNT 423 (461)
Q Consensus 379 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~ 423 (461)
+...+..+...+...|++++|...++++.+.. |.+...+..+..+
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 35566667777778888888888888877765 6666666555443
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.66 E-value=1.1e-14 Score=126.58 Aligned_cols=241 Identities=8% Similarity=-0.091 Sum_probs=177.2
Q ss_pred cCChHHHHHHHHHHHhcCCC--CCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHH
Q 038303 187 RGFCKEAVSVFQEMEKTKEA--EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 264 (461)
Q Consensus 187 ~~~~~~a~~~~~~m~~~~~~--~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 264 (461)
.|++++|+..|+++.+.... +.+..++..+...+...|+++.|...++.+.+. .+.+..++..+...|...|++++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCHHH
Confidence 45677777777777664211 113455666666677777777777777777662 23345677888888888999999
Q ss_pred HHHHHHHccC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhh
Q 038303 265 AIQVFNMLAY---KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 341 (461)
Q Consensus 265 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 341 (461)
|...|+++.+ .+...+..+...+...|++++|...++++.+. .|+.......+..+...|++++|...++....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~- 172 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE- 172 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh-
Confidence 9998888763 35778888999999999999999999999884 45555555555566777999999999988877
Q ss_pred cCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCch-----hhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChh
Q 038303 342 YEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE-----WSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVG 415 (461)
Q Consensus 342 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 415 (461)
..+++...+ .++..+...++.++|...+++. ...|. ...+..+...+...|++++|...++++.+..|.+..
T Consensus 173 -~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 173 -KSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp -HSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred -cCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 234444444 4777788888899999999887 43342 467788888899999999999999999998887754
Q ss_pred HHHHHHHHHhccCChhhHHHHH
Q 038303 416 TFALMSNTFAGADRWEDTNKIR 437 (461)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~ 437 (461)
.+ ..++...|++++|++.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 44 56777889999988776
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=5.6e-14 Score=121.91 Aligned_cols=244 Identities=10% Similarity=-0.031 Sum_probs=144.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcc--hHHHHHHHH
Q 038303 178 TTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN--LVGNAVINM 255 (461)
Q Consensus 178 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~ 255 (461)
......+...|++++|...|++..+. .+.+...+..+...+...|+++.|...++...+ .+..++. ..+..+...
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAK--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHT--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHH
Confidence 34445555566666666666665553 222333555555555555555555555555554 2222221 235666666
Q ss_pred HHhcCCHHHHHHHHHHccC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHH
Q 038303 256 YVKCGDVGIAIQVFNMLAY---KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGL 332 (461)
Q Consensus 256 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 332 (461)
+...|++++|.+.|++..+ .+...|..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777766552 245667777777777777777777777776642 123345555552333345777777
Q ss_pred HHHHHhHhhcCCCCCcchHHHHHHHHhhcCC---HHHHHHHHHhC----CCCchh------hHHHHHHHHHHhcCChHHH
Q 038303 333 ILFKAMSTVYEIVPQMQHYACVVDMYGRAGL---LEEAEAFIREM----PIEAEW------SVWGALLNACRIHRNDEMF 399 (461)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~~------~~~~~l~~~~~~~~~~~~a 399 (461)
..|+++.+ ..+.+...+..+...+...|+ +++|...++++ ...|+. ..|..+...|...|++++|
T Consensus 163 ~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 163 SSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 77777766 223335566666666666666 66677666665 222331 3566666778888888888
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHhcc
Q 038303 400 DRIRQDLVNKKGVSVGTFALMSNTFAGA 427 (461)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (461)
...++++.+..|.++.+...+.......
T Consensus 241 ~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 8888888888888887777776655444
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.61 E-value=1.6e-13 Score=117.55 Aligned_cols=198 Identities=7% Similarity=-0.064 Sum_probs=154.0
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHccC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 038303 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAY---KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322 (461)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 322 (461)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|.+.++++.+... .+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHH
Confidence 34566777777888888888888877652 3566777888888888888888888888877532 2567777788888
Q ss_pred HcCCChHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHH
Q 038303 323 SHGGLVDQGLILFKAMSTVYEIVP-QMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMF 399 (461)
Q Consensus 323 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 399 (461)
...|++++|..+++++.. .+..| +...+..+...+.+.|++++|...++++ ...| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888866 33334 4667777888888888888888888887 2223 456677777788888999999
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcCC
Q 038303 400 DRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445 (461)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 445 (461)
...++++.+..|.+...+..++..+.+.|++++|.+.++++.+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 9999988888888888888888888889999999999988877643
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=2.9e-13 Score=113.64 Aligned_cols=197 Identities=8% Similarity=-0.026 Sum_probs=145.7
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHccC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 038303 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAY---KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322 (461)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 322 (461)
...+..+...+...|++++|.+.|+.+.+ .+...|..+...+...|++++|.+.+++..+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 44556677777777888888777776652 345677777778888888888888888877753 22556777777788
Q ss_pred HcC-CChHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHH
Q 038303 323 SHG-GLVDQGLILFKAMSTVYEIVP-QMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEM 398 (461)
Q Consensus 323 ~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 398 (461)
... |++++|...++.+.+ .+..| +...+..+...+...|++++|...++++ ...| +...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 888 888888888888776 32323 3566777788888888888888888877 2233 35567777777888888888
Q ss_pred HHHHHHHHhhcCC-CChhHHHHHHHHHhccCChhhHHHHHHHHHHcC
Q 038303 399 FDRIRQDLVNKKG-VSVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444 (461)
Q Consensus 399 a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 444 (461)
|...++++.+..| .+...+..+...+...|+.++|..+++.+.+..
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 8888888888777 778888888888888888888888888876543
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=4.9e-13 Score=115.94 Aligned_cols=218 Identities=8% Similarity=-0.041 Sum_probs=127.7
Q ss_pred HHHHHhcCCHHHHHHHHhhC---CCCCceeHHHHHHHHHcCCChHHHHHHHhcC-CCCCCch----hHHHHHHHhcccch
Q 038303 52 LHFYVTVKDIFSAHQIFNSV---VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI-DVKPNAN----TLVSVLSACSSLVS 123 (461)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~p~~~----~~~~ll~~~~~~~~ 123 (461)
...+...|++++|...|++. .+.+...+..+...+...|++++|++.+++. ...++.. .|..+...+...|+
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~ 89 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ 89 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHccc
Confidence 33444444455554444443 1122334455555555555555555555554 2112222 25556666666677
Q ss_pred hHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCC---CchhHHHHHHHHHHhcCChHHHHHHHHHH
Q 038303 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK---RNVVSWTTMIGGYAERGFCKEAVSVFQEM 200 (461)
Q Consensus 124 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m 200 (461)
+++|...++...+..+. +..++..+...|...|++++|...|++..+ .+...|..+...+...+++++|.+.|++.
T Consensus 90 ~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 168 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKV 168 (272)
T ss_dssp HHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777766544 567788888889999999999999988875 34556766763444456999999999998
Q ss_pred HhcCCCCCChhhHHHHHHHhhccch---hhhHHHHHHHHHhhcCCCCcc------hHHHHHHHHHHhcCCHHHHHHHHHH
Q 038303 201 EKTKEAEPNEATLVNVLSACSSISA---LSFGKYVHSYISTRYDLSVSN------LVGNAVINMYVKCGDVGIAIQVFNM 271 (461)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~ 271 (461)
.+. .+.+...+..+...+...++ .+.|...++...+...-.|+. .++..+...|.+.|++++|.+.|++
T Consensus 169 ~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 246 (272)
T 3u4t_A 169 LEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKN 246 (272)
T ss_dssp HHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 884 33345566666666666666 666777777666533222332 2333344444444444444444443
Q ss_pred c
Q 038303 272 L 272 (461)
Q Consensus 272 ~ 272 (461)
.
T Consensus 247 a 247 (272)
T 3u4t_A 247 I 247 (272)
T ss_dssp H
T ss_pred H
Confidence 3
No 46
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.60 E-value=3.8e-13 Score=125.34 Aligned_cols=344 Identities=9% Similarity=-0.042 Sum_probs=186.8
Q ss_pred HHHHHHcCCChHHHHHHHhcCCCCCCchhHHHHHHHhcccchh---HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcC-
Q 038303 82 IISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSH---KLGKAIHAHSLRNLNENNIILDNAILDFYIRCG- 157 (461)
Q Consensus 82 li~~~~~~~~~~~a~~~~~~m~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 157 (461)
+...+.+.|++++|++.|++.--..+...+..+...+...|+. ++|...|+...+. +...+..+...+...|
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 3445556667777777776660001233344444444555555 6666666666644 3334444554344433
Q ss_pred ----ChhhHHHHHhcCCC-CchhHHHHHHHHHHhcCChHH---HHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhH
Q 038303 158 ----SLASCGYLFVKMPK-RNVVSWTTMIGGYAERGFCKE---AVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 229 (461)
Q Consensus 158 ----~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a 229 (461)
+.++|..+|++..+ .+...+..|...|...+..++ +.+.+......| +......+...+...+.++.+
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----YPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT----CTTHHHHHHHHHHHHTCGGGG
T ss_pred CCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcccC
Confidence 55666666666544 234456666666665554333 333333333332 233444445555555544444
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHHHhcC---CHHHHHHHHHHccCC---ChhhHHHHHHHHHhc----CChHHHHHH
Q 038303 230 KYVHSYISTRYDLSVSNLVGNAVINMYVKCG---DVGIAIQVFNMLAYK---DKISWSTVISGLAMN----GCGRQALQL 299 (461)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~----~~~~~a~~~ 299 (461)
......+.+ .-...++..+..|...|.+.| +.++|.+.|+...+. +...+..+...|... +++++|...
T Consensus 161 ~~~a~~~~~-~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 161 LDDVERICK-AALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHHHH-HHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 333333322 122233346677777777788 777888888776532 233335566666544 678888888
Q ss_pred HHHHHhcCCCCCHhHHHHHHHH-H--HcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcC-----CHHHHHHHH
Q 038303 300 FSLMIINAVFPDDVTFIALISA-C--SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG-----LLEEAEAFI 371 (461)
Q Consensus 300 ~~~m~~~g~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~ 371 (461)
|++.. .| +...+..+... + ...+++++|...|++..+ .| +...+..|...|. .| ++++|.++|
T Consensus 240 ~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 240 LEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 88876 32 34455555554 3 457888888888888776 34 4556666666665 44 888888888
Q ss_pred HhCCCCchhhHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhc----cCChhhHHHHHHHHHHc
Q 038303 372 REMPIEAEWSVWGALLNACRI----HRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAG----ADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 372 ~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~ 443 (461)
++.- ..+...+..+...|.. ..+.++|...|++..+.. ++.....|+..|.. ..+.++|...+++..+.
T Consensus 311 ~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 311 EKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp HTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred HHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 8876 5555566666655554 347888888888877643 34567777777764 45788888888888777
Q ss_pred CCc
Q 038303 444 GLK 446 (461)
Q Consensus 444 g~~ 446 (461)
|..
T Consensus 388 g~~ 390 (452)
T 3e4b_A 388 DTP 390 (452)
T ss_dssp CCH
T ss_pred CCH
Confidence 653
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=5.2e-14 Score=119.82 Aligned_cols=199 Identities=9% Similarity=0.017 Sum_probs=135.5
Q ss_pred CcchHHHHHHHHHHhcCCHHHHHHHHHHccCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 038303 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALIS 320 (461)
Q Consensus 244 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 320 (461)
.....+..+...+...|++++|...|+++.+. +...+..+...+...|++++|...+++..+... .+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 33455566677777778888888887776532 456677777788888888888888888777532 25567777777
Q ss_pred HHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCC-chhhHHHHHHHHHHhcCChHH
Q 038303 321 ACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIE-AEWSVWGALLNACRIHRNDEM 398 (461)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~ 398 (461)
.+...|++++|...++++.+ ..+.+...+..+...+.+.|++++|...++++ ... .+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALR--AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 88888888888888888776 23445667777888888888888888888877 222 345566777777888888888
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcCC
Q 038303 399 FDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445 (461)
Q Consensus 399 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 445 (461)
|+..++++.+..|.+..++..++.+|.+.|++++|.+.++++.+...
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 88888888888888888888888888888888888888888877543
No 48
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.59 E-value=2.1e-11 Score=117.57 Aligned_cols=400 Identities=7% Similarity=-0.032 Sum_probs=249.9
Q ss_pred CCcchHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCC---HHHHHHHHhhCCC-----CCceeH
Q 038303 8 YNHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD---IFSAHQIFNSVVF-----PDVVSW 79 (461)
Q Consensus 8 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~-----~~~~~~ 79 (461)
-|..+|..++..+...+.++.+..+|+.+... ++.+...|..-+..-.+.++ ++.+.++|++... |++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 46677888888888888889999999988876 34466777777777777787 8899999987732 677777
Q ss_pred HHHHHHHHcCCCh--------HHHHHHHhcC----CC-CCCc-hhHHHHHHHhc---------ccchhHHHHHHHHHHHh
Q 038303 80 TTIISGLSKCGFH--------KEAIDMFCGI----DV-KPNA-NTLVSVLSACS---------SLVSHKLGKAIHAHSLR 136 (461)
Q Consensus 80 ~~li~~~~~~~~~--------~~a~~~~~~m----~~-~p~~-~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 136 (461)
...+.-..+.++. +...++|+.. |. .|+. ..|...+.... ..++++.+..+|+.++.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 7766654444432 2334666654 66 6654 45555554332 23456778888888875
Q ss_pred hcCCCChhHHHHHHHHHHH-------------cCChhhHHHHHhc-------CCC--------------C--c------h
Q 038303 137 NLNENNIILDNAILDFYIR-------------CGSLASCGYLFVK-------MPK--------------R--N------V 174 (461)
Q Consensus 137 ~~~~~~~~~~~~l~~~~~~-------------~g~~~~a~~~~~~-------~~~--------------~--~------~ 174 (461)
.....-..+|......-.. ..+++.|...+.+ +.+ | + .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 3111112333222111111 1122333333332 111 0 0 1
Q ss_pred hHHHHHHHHHHhcC-------ChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHH-HHHHHHHhhcCCCCcc
Q 038303 175 VSWTTMIGGYAERG-------FCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGK-YVHSYISTRYDLSVSN 246 (461)
Q Consensus 175 ~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~ 246 (461)
..|...+.---..+ ..+.+..+|++.... ++-+...|......+...|+.+.|. .+++.... .++.+.
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~--~~P~s~ 378 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ--CIPNSA 378 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hCCCCH
Confidence 23444444322222 123456677777775 5556677777777777778888885 88888766 344455
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHccC-------------CC------------hhhHHHHHHHHHhcCChHHHHHHHH
Q 038303 247 LVGNAVINMYVKCGDVGIAIQVFNMLAY-------------KD------------KISWSTVISGLAMNGCGRQALQLFS 301 (461)
Q Consensus 247 ~~~~~li~~~~~~g~~~~a~~~~~~~~~-------------~~------------~~~~~~l~~~~~~~~~~~~a~~~~~ 301 (461)
..+-..+....+.|++++|.++|+.+.. |+ ...|...+....+.|+.+.|..+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5667777777888888888888877653 21 2357777777777888888888888
Q ss_pred HHHhcCCCCCHhHHHHHHHHHHc-CCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-
Q 038303 302 LMIINAVFPDDVTFIALISACSH-GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA- 378 (461)
Q Consensus 302 ~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 378 (461)
+..+.-..+....|......-.+ .++.+.|..+|+...+. ++.+...+...++.....|+.+.|..+|++. ...|
T Consensus 459 ~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 459 KCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 88775111122333332222223 34588888888888773 4445566677777777888888888888887 2223
Q ss_pred ---hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCh
Q 038303 379 ---EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414 (461)
Q Consensus 379 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 414 (461)
....|...+..-.+.|+.+.+..+.+++.+..|.+.
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 344677777777788888888888888888777653
No 49
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.59 E-value=1.3e-13 Score=115.09 Aligned_cols=191 Identities=12% Similarity=-0.048 Sum_probs=91.1
Q ss_pred ChhHHHHHHHHHHHcCChhhHHHHHhcCCC---CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHH
Q 038303 142 NIILDNAILDFYIRCGSLASCGYLFVKMPK---RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLS 218 (461)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~ 218 (461)
+...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|...|++..+. .|.+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~------- 74 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLG------- 74 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHH-------
Confidence 444445555555555555555555554432 23444555555555555555555555555442 112222
Q ss_pred HhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhc-----------CCHHHHHHHHHHccC--C-ChhhHHHHH
Q 038303 219 ACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKC-----------GDVGIAIQVFNMLAY--K-DKISWSTVI 284 (461)
Q Consensus 219 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~~~~--~-~~~~~~~l~ 284 (461)
.+..+...+.+. |++++|...|++..+ | +...|..+.
T Consensus 75 -----------------------------a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg 125 (217)
T 2pl2_A 75 -----------------------------GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRG 125 (217)
T ss_dssp -----------------------------HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 333333334333 555555555555442 2 344555555
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCH
Q 038303 285 SGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364 (461)
Q Consensus 285 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 364 (461)
..+...|++++|+..|++..+.. .+...+..+..++...|++++|+..|++..+ ..+.+...+..+...+.+.|++
T Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~ 201 (217)
T 2pl2_A 126 LVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALE--QAPKDLDLRVRYASALLLKGKA 201 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTC----
T ss_pred HHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCH
Confidence 56666666666666666665554 4555555566666666666666666666555 1223345555555566666666
Q ss_pred HHHHHHHHhC
Q 038303 365 EEAEAFIREM 374 (461)
Q Consensus 365 ~~A~~~~~~~ 374 (461)
++|...+++.
T Consensus 202 ~~A~~~~~~~ 211 (217)
T 2pl2_A 202 EEAARAAALE 211 (217)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 6666555543
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=7.4e-13 Score=113.38 Aligned_cols=205 Identities=10% Similarity=-0.022 Sum_probs=135.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHH
Q 038303 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVI 253 (461)
Q Consensus 174 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 253 (461)
...|..+...+...|++++|...|+++.+. .+.+...+ ..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~------------------------------------~~la 78 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAH------------------------------------AALA 78 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHH------------------------------------HHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHH------------------------------------HHHH
Confidence 566777777888888888888888887764 22333444 4444
Q ss_pred HHHHhcCCHHHHHHHHHHccC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHhHHHHHHHHHHcCCChH
Q 038303 254 NMYVKCGDVGIAIQVFNMLAY---KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP-DDVTFIALISACSHGGLVD 329 (461)
Q Consensus 254 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~ 329 (461)
..|...|++++|.+.++++.+ .+...+..+...+...|++++|.+.++++.+.+..| +...+..+...+...|+++
T Consensus 79 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 158 (252)
T 2ho1_A 79 VVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPA 158 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHH
Confidence 455555555555555554431 244556666666777777777777777776633334 3355666667777777888
Q ss_pred HHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCC-chhhHHHHHHHHHHhcCChHHHHHHHHHHh
Q 038303 330 QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIE-AEWSVWGALLNACRIHRNDEMFDRIRQDLV 407 (461)
Q Consensus 330 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 407 (461)
+|...++++.+. .+.+...+..+...+...|++++|...++++ ... .+...+..+...+...|+.++|.+.++++.
T Consensus 159 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 159 QAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 888777777662 2334666777777788888888888888776 333 344456666666778888888888888888
Q ss_pred hcCCCChhHHH
Q 038303 408 NKKGVSVGTFA 418 (461)
Q Consensus 408 ~~~~~~~~~~~ 418 (461)
+..|.++....
T Consensus 237 ~~~p~~~~~~~ 247 (252)
T 2ho1_A 237 RLYPGSLEYQE 247 (252)
T ss_dssp HHCTTSHHHHH
T ss_pred HHCCCCHHHHH
Confidence 87777765543
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=1.3e-12 Score=113.31 Aligned_cols=224 Identities=8% Similarity=-0.088 Sum_probs=146.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHH
Q 038303 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAV 252 (461)
Q Consensus 173 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 252 (461)
+..++..+...+...|++++|...|++..+.+ +.. .+..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----~~~------------------------------------a~~~l 44 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENS------------------------------------GCFNL 44 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHH------------------------------------HHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----CHH------------------------------------HHHHH
Confidence 44556666666777777777777777766532 122 33444
Q ss_pred HHHHHh----cCCHHHHHHHHHHccC-CChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHH
Q 038303 253 INMYVK----CGDVGIAIQVFNMLAY-KDKISWSTVISGLAM----NGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323 (461)
Q Consensus 253 i~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 323 (461)
...|.. .+++++|...|++..+ .+...+..+...+.. .+++++|+..|++..+.+ +...+..+...|.
T Consensus 45 g~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 121 (273)
T 1ouv_A 45 GVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYH 121 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHH
Confidence 455555 5666666666655442 245556666666666 677777777777776653 5566666666676
Q ss_pred c----CCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhh----cCCHHHHHHHHHhCCCCchhhHHHHHHHHHHh---
Q 038303 324 H----GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR----AGLLEEAEAFIREMPIEAEWSVWGALLNACRI--- 392 (461)
Q Consensus 324 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~--- 392 (461)
. .+++++|+..|++..+ .+ +...+..+...|.. .+++++|...+++.-...+...+..+...|..
T Consensus 122 ~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~ 197 (273)
T 1ouv_A 122 DGKVVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEG 197 (273)
T ss_dssp HCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred cCCCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCC
Confidence 6 7777777777777766 23 44555666666666 77777777777776212234556666666777
Q ss_pred -cCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhc----cCChhhHHHHHHHHHHcCC
Q 038303 393 -HRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAG----ADRWEDTNKIRDEIRRMGL 445 (461)
Q Consensus 393 -~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 445 (461)
.+++++|...+++..+..+ +..+..++.+|.+ .+++++|.+.+++..+.|.
T Consensus 198 ~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 198 ATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 7888888888888777644 5677788888887 7888888888888877663
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=5.3e-13 Score=120.59 Aligned_cols=246 Identities=8% Similarity=-0.030 Sum_probs=175.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccch-hhhHHHHHHHHHhhcCCCCcchHHHHH
Q 038303 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA-LSFGKYVHSYISTRYDLSVSNLVGNAV 252 (461)
Q Consensus 174 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l 252 (461)
...|+.+...+.+.|++++|+..+++..+. .+-+...|..+..++...|+ +++|...++.+.+ -.+-+..+|..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~--l~P~~~~a~~~~ 172 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH--HCCCCHHHHHHH
Confidence 345666666777777777777777777763 33345556666666666665 7777777776665 223345667778
Q ss_pred HHHHHhcCCHHHHHHHHHHccC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHc-CCCh
Q 038303 253 INMYVKCGDVGIAIQVFNMLAY---KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSH-GGLV 328 (461)
Q Consensus 253 i~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~ 328 (461)
..++...|++++|+..|+++.+ .+...|..+..++.+.|++++|+..++++++.... +...|+.+..++.. .|..
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence 8888888888888888887763 36677888888888889999999999998886433 56778888888888 5665
Q ss_pred HHH-----HHHHHHhHhhcCCCCCcchHHHHHHHHhhcC--CHHHHHHHHHhCCCCc-hhhHHHHHHHHHHhcC------
Q 038303 329 DQG-----LILFKAMSTVYEIVPQMQHYACVVDMYGRAG--LLEEAEAFIREMPIEA-EWSVWGALLNACRIHR------ 394 (461)
Q Consensus 329 ~~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~------ 394 (461)
++| +..+++... --+-+...|..+...+.+.| ++++|.+.+.++...| +...+..+...|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp SHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred hHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 777 477777766 22344667777888888877 5888888888774344 3445666777776653
Q ss_pred ---ChHHHHHHHHHH-hhcCCCChhHHHHHHHHHhc
Q 038303 395 ---NDEMFDRIRQDL-VNKKGVSVGTFALMSNTFAG 426 (461)
Q Consensus 395 ---~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 426 (461)
..++|+.+++++ .+.+|.....|..++..+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258899999998 78888888888888776654
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=1.2e-13 Score=117.57 Aligned_cols=212 Identities=8% Similarity=-0.001 Sum_probs=137.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHH
Q 038303 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAV 252 (461)
Q Consensus 173 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 252 (461)
....|..+...+...|++++|..+|+++.+. .+.+ ...+..+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~------------------------------------~~~~~~l 63 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKED------------------------------------AIPYINF 63 (243)
T ss_dssp --------------------CCTTHHHHHTT--CTTC------------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--Cccc------------------------------------HHHHHHH
Confidence 3344555566666666666666666666553 2222 3344555
Q ss_pred HHHHHhcCCHHHHHHHHHHcc---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChH
Q 038303 253 INMYVKCGDVGIAIQVFNMLA---YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVD 329 (461)
Q Consensus 253 i~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 329 (461)
...+...|++++|...++++. ..+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|+++
T Consensus 64 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~ 142 (243)
T 2q7f_A 64 ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPK 142 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHH
Confidence 566666666666666666554 2255667777778888888888888888887753 235667777888888888888
Q ss_pred HHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CC-CchhhHHHHHHHHHHhcCChHHHHHHHHHHh
Q 038303 330 QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PI-EAEWSVWGALLNACRIHRNDEMFDRIRQDLV 407 (461)
Q Consensus 330 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 407 (461)
+|...++++.+ ..+.+...+..+...+.+.|++++|...++++ .. +.+...+..+...+...|++++|...++++.
T Consensus 143 ~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 143 LALPYLQRAVE--LNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 88888888876 23445677788888888889999999888887 22 2345577778888899999999999999999
Q ss_pred hcCCCChhHHHHHHHHHh
Q 038303 408 NKKGVSVGTFALMSNTFA 425 (461)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~ 425 (461)
+..|.+..++..+.....
T Consensus 221 ~~~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 221 DIQPDHMLALHAKKLLGH 238 (243)
T ss_dssp HHCTTCHHHHHHHTC---
T ss_pred ccCcchHHHHHHHHHHHh
Confidence 988888888776665443
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.57 E-value=3.9e-14 Score=130.57 Aligned_cols=297 Identities=11% Similarity=-0.016 Sum_probs=186.7
Q ss_pred CchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCChhhHHHHHhcCCC---------Cch
Q 038303 107 NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN---IILDNAILDFYIRCGSLASCGYLFVKMPK---------RNV 174 (461)
Q Consensus 107 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~ 174 (461)
....+......+...|++++|...++.+.+..+... ..++..+...+...|++++|...+++..+ ...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344455666678888888888888888888744311 24667777888888888888887776532 124
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC----hhhHHHHHHHhhccch-------------hhhHHHHHHHHH
Q 038303 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN----EATLVNVLSACSSISA-------------LSFGKYVHSYIS 237 (461)
Q Consensus 175 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~~~l~~~~~~~~-------------~~~a~~~~~~~~ 237 (461)
.++..+...+...|++++|...+++..+.....++ ..++..+...+...|+ .+.+...
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~----- 162 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA----- 162 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH-----
Confidence 46677777788888888888888877653100111 1233334444444444 0000000
Q ss_pred hhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccC-----C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 038303 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-----K----DKISWSTVISGLAMNGCGRQALQLFSLMIINAV 308 (461)
Q Consensus 238 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 308 (461)
+++|...+++... . ...++..+...+...|++++|...+++..+...
T Consensus 163 ------------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (406)
T 3sf4_A 163 ------------------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218 (406)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 4444444433321 1 123566677777777888888777777654211
Q ss_pred -CCC----HhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHhhcCCHHHHHHHHHhC-CC--
Q 038303 309 -FPD----DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ----MQHYACVVDMYGRAGLLEEAEAFIREM-PI-- 376 (461)
Q Consensus 309 -~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-- 376 (461)
.++ ..++..+...+...|++++|...+++......-.++ ..++..+...|...|++++|...+++. ..
T Consensus 219 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 111 136677777788888888888888777552111111 456677788888888888888888776 11
Q ss_pred ----Cc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcC------CCChhHHHHHHHHHhccCChhh
Q 038303 377 ----EA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKK------GVSVGTFALMSNTFAGADRWED 432 (461)
Q Consensus 377 ----~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~ 432 (461)
.+ ...++..+...+...|++++|...+++..+.. +....++..++..+...|+...
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 11 13356667777888999999999999887632 2335678888888888887633
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=7.9e-13 Score=110.91 Aligned_cols=208 Identities=10% Similarity=-0.018 Sum_probs=144.6
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHH
Q 038303 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAV 252 (461)
Q Consensus 173 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 252 (461)
+...|..+...+...|++++|...++++.+. .+.+.. .+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~------------------------------------~~~~l 48 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS--DPKNEL------------------------------------AWLVR 48 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH------------------------------------HHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CccchH------------------------------------HHHHH
Confidence 3455666677777777777777777776663 222233 44555
Q ss_pred HHHHHhcCCHHHHHHHHHHccC---CChhhHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCCC-HhHHHHHHHHHHcCCC
Q 038303 253 INMYVKCGDVGIAIQVFNMLAY---KDKISWSTVISGLAMN-GCGRQALQLFSLMIINAVFPD-DVTFIALISACSHGGL 327 (461)
Q Consensus 253 i~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~ 327 (461)
...|...|++++|.+.++++.+ .+...+..+...+... |++++|...++++.+.+..|+ ...+..+..++...|+
T Consensus 49 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 128 (225)
T 2vq2_A 49 AEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ 128 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC
Confidence 5566666666666666665542 2456677777778888 888888888888877333343 4667777788888888
Q ss_pred hHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCC--chhhHHHHHHHHHHhcCChHHHHHHHH
Q 038303 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIE--AEWSVWGALLNACRIHRNDEMFDRIRQ 404 (461)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~ 404 (461)
+++|...++++.+ ..+.+...+..+...+.+.|++++|...++++ ... .+...+..+...+...|+.+.+..+++
T Consensus 129 ~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 206 (225)
T 2vq2_A 129 FGLAEAYLKRSLA--AQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEA 206 (225)
T ss_dssp HHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 8888888888876 23345677788888888889999998888887 222 344456666666788899999999998
Q ss_pred HHhhcCCCChhHHHHH
Q 038303 405 DLVNKKGVSVGTFALM 420 (461)
Q Consensus 405 ~~~~~~~~~~~~~~~l 420 (461)
.+.+..|.++.....+
T Consensus 207 ~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 207 QLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHCTTCHHHHHHH
T ss_pred HHHHhCCCCHHHHHHh
Confidence 8888888777665443
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.57 E-value=5.7e-14 Score=129.80 Aligned_cols=262 Identities=10% Similarity=-0.041 Sum_probs=161.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCh----hhHHHHHHHhhccchhhhHHHHHHHHHhhc---C-CCCcchHHHH
Q 038303 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNE----ATLVNVLSACSSISALSFGKYVHSYISTRY---D-LSVSNLVGNA 251 (461)
Q Consensus 180 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~---~-~~~~~~~~~~ 251 (461)
+...+...|++++|...|++..+.. +.+. ..+..+...+...|+++.|...++...+.. + ......++..
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3334444455555555555544421 1111 233344444444455555554444443310 1 1112334566
Q ss_pred HHHHHHhcCCHHHHHHHHHHccCC---------ChhhHHHHHHHHHhcCC-----------------hHHHHHHHHHHHh
Q 038303 252 VINMYVKCGDVGIAIQVFNMLAYK---------DKISWSTVISGLAMNGC-----------------GRQALQLFSLMII 305 (461)
Q Consensus 252 li~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~m~~ 305 (461)
+...|...|++++|...+++..+. ...++..+...+...|+ +++|.+.+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 666677777777777776655421 23456667777777777 7777777776544
Q ss_pred c----CCCC-CHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 038303 306 N----AVFP-DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ----MQHYACVVDMYGRAGLLEEAEAFIREM-P 375 (461)
Q Consensus 306 ~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 375 (461)
. +-.| ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...+++. .
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 1111 1246677777888888888888888877652111111 236777888888889999988888876 1
Q ss_pred CCc-------hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCC------CChhHHHHHHHHHhccCChhhHHHHHHHHHH
Q 038303 376 IEA-------EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKG------VSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442 (461)
Q Consensus 376 ~~p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 442 (461)
..+ ...++..+...+...|++++|...++++.+..+ ....++..++.+|.+.|++++|.+.+++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111 134666777778889999999999998886322 2245788899999999999999999988765
Q ss_pred c
Q 038303 443 M 443 (461)
Q Consensus 443 ~ 443 (461)
.
T Consensus 372 ~ 372 (411)
T 4a1s_A 372 L 372 (411)
T ss_dssp H
T ss_pred H
Confidence 4
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=1.5e-13 Score=119.37 Aligned_cols=118 Identities=10% Similarity=-0.117 Sum_probs=66.8
Q ss_pred hcccchhHHHHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhhHHHHHhcCCC---CchhHHHHHHHHHHhcCChH
Q 038303 118 CSSLVSHKLGKAIHAHSLRNLNE---NNIILDNAILDFYIRCGSLASCGYLFVKMPK---RNVVSWTTMIGGYAERGFCK 191 (461)
Q Consensus 118 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 191 (461)
....|++++|...++.+.+.... .+..++..+...+...|++++|...|++..+ .+..+|..+...+...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 34557777777777777765321 1345566666666666666666666666543 34556666666666666666
Q ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHH
Q 038303 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIS 237 (461)
Q Consensus 192 ~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~ 237 (461)
+|...|++..+. .+.+...+..+...+...|++++|...++.+.
T Consensus 95 ~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 138 (275)
T 1xnf_A 95 AAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFY 138 (275)
T ss_dssp HHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 666666666653 22233344444444444444444444444443
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.56 E-value=1.5e-13 Score=126.69 Aligned_cols=265 Identities=11% Similarity=0.028 Sum_probs=180.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC----hhhHHHHHHHhhccchhhhHHHHHHHHHhh---cCCCC-cchH
Q 038303 177 WTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN----EATLVNVLSACSSISALSFGKYVHSYISTR---YDLSV-SNLV 248 (461)
Q Consensus 177 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~---~~~~~-~~~~ 248 (461)
+......+...|++++|...|++..+.. +.+ ...+..+...+...|+++.|...++..... .+..| ...+
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3444445555555555555555555431 111 123444445555555555555555544331 11111 1345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHccC-----CC----hhhHHHHHHHHHhcCC--------------------hHHHHHH
Q 038303 249 GNAVINMYVKCGDVGIAIQVFNMLAY-----KD----KISWSTVISGLAMNGC--------------------GRQALQL 299 (461)
Q Consensus 249 ~~~li~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~ 299 (461)
+..+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 66777788888888888888876652 12 3467788888889999 9999999
Q ss_pred HHHHHhc----CCCCC-HhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHhhcCCHHHHHHH
Q 038303 300 FSLMIIN----AVFPD-DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ----MQHYACVVDMYGRAGLLEEAEAF 370 (461)
Q Consensus 300 ~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 370 (461)
+++..+. +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 8876542 11121 246778888899999999999999988762221122 34788889999999999999999
Q ss_pred HHhC-CCCc---h----hhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC------ChhHHHHHHHHHhccCChhhHHHH
Q 038303 371 IREM-PIEA---E----WSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV------SVGTFALMSNTFAGADRWEDTNKI 436 (461)
Q Consensus 371 ~~~~-~~~p---~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~ 436 (461)
+++. ...| + ..++..+...+...|++++|...++++.+..+. ...++..++.+|.+.|++++|.+.
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9887 1111 1 446777778899999999999999999874322 266889999999999999999999
Q ss_pred HHHHHHc
Q 038303 437 RDEIRRM 443 (461)
Q Consensus 437 ~~~m~~~ 443 (461)
+++..+.
T Consensus 330 ~~~al~~ 336 (406)
T 3sf4_A 330 AEKHLEI 336 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987553
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.55 E-value=1.7e-13 Score=122.65 Aligned_cols=261 Identities=12% Similarity=0.036 Sum_probs=170.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCC----hhhHHHHHHHhhccchhhhHHHHHHHHHhh---cCCCC-cchHHHHH
Q 038303 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPN----EATLVNVLSACSSISALSFGKYVHSYISTR---YDLSV-SNLVGNAV 252 (461)
Q Consensus 181 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~---~~~~~-~~~~~~~l 252 (461)
...+...|++++|...|+++.+.. +.+ ...+..+...+...|+++.|...++...+. .+..+ ...++..+
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 344555555555555555555431 111 133444444555555555555555544331 11111 13455667
Q ss_pred HHHHHhcCCHHHHHHHHHHccC-----CC----hhhHHHHHHHHHhcCC--------------------hHHHHHHHHHH
Q 038303 253 INMYVKCGDVGIAIQVFNMLAY-----KD----KISWSTVISGLAMNGC--------------------GRQALQLFSLM 303 (461)
Q Consensus 253 i~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~m 303 (461)
...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|.+.+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 7777778888888777766542 12 2367777777888888 88888888776
Q ss_pred Hhc----CCCC-CHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHhhcCCHHHHHHHHHhC
Q 038303 304 IIN----AVFP-DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ----MQHYACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 304 ~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
.+. +..| ....+..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|...+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 532 1111 1246777778888899999999999887652111111 337778888999999999999999877
Q ss_pred -CCCc-------hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCC------CChhHHHHHHHHHhccCChhhHHHHHHHH
Q 038303 375 -PIEA-------EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKG------VSVGTFALMSNTFAGADRWEDTNKIRDEI 440 (461)
Q Consensus 375 -~~~p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 440 (461)
...+ ...++..+...+...|++++|...++++.+..+ ....++..++.+|.+.|++++|...+++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1111 134666777779999999999999999887432 12557889999999999999999999998
Q ss_pred HHc
Q 038303 441 RRM 443 (461)
Q Consensus 441 ~~~ 443 (461)
.+.
T Consensus 330 ~~~ 332 (338)
T 3ro2_A 330 LEI 332 (338)
T ss_dssp HHC
T ss_pred HHH
Confidence 764
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=3.4e-12 Score=110.68 Aligned_cols=228 Identities=11% Similarity=-0.080 Sum_probs=147.2
Q ss_pred ChhHHHHHHHHHHHcCChhhHHHHHhcCCC-CchhHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCChhhHHHH
Q 038303 142 NIILDNAILDFYIRCGSLASCGYLFVKMPK-RNVVSWTTMIGGYAE----RGFCKEAVSVFQEMEKTKEAEPNEATLVNV 216 (461)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 216 (461)
+...+..+...+...|++++|...|++..+ .+..++..+...+.. .+++++|...|++..+.+ +...+..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~l 80 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNGCHLL 80 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CHHHHHHH
Confidence 567788899999999999999999998876 456778888899999 999999999999998753 34444444
Q ss_pred HHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccC-CChhhHHHHHHHHHh----cC
Q 038303 217 LSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDKISWSTVISGLAM----NG 291 (461)
Q Consensus 217 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~ 291 (461)
...+... ....+++++|...|++..+ .+...+..+...+.. .+
T Consensus 81 g~~~~~g--------------------------------~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~ 128 (273)
T 1ouv_A 81 GNLYYSG--------------------------------QGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTR 128 (273)
T ss_dssp HHHHHHT--------------------------------SSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCC
T ss_pred HHHHhCC--------------------------------CCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCccc
Confidence 4444440 0004555555555544432 234455555555555 66
Q ss_pred ChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHc----CCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhh----cCC
Q 038303 292 CGRQALQLFSLMIINAVFPDDVTFIALISACSH----GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR----AGL 363 (461)
Q Consensus 292 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 363 (461)
++++|++.+++..+.+ +...+..+...|.. .+++++|...|++..+ . .+...+..+...|.. .++
T Consensus 129 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~~~~g~~~~~~ 201 (273)
T 1ouv_A 129 DFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACD-L---KDSPGCFNAGNMYHHGEGATKN 201 (273)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTCSSCCC
T ss_pred CHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCcc
Confidence 6666666666666644 34455555555555 6677777777766665 2 234555566666666 677
Q ss_pred HHHHHHHHHhC-CCCchhhHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCCC
Q 038303 364 LEEAEAFIREM-PIEAEWSVWGALLNACRI----HRNDEMFDRIRQDLVNKKGVS 413 (461)
Q Consensus 364 ~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 413 (461)
+++|...+++. ...| ...+..+...|.. .+++++|...+++..+..|++
T Consensus 202 ~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 202 FKEALARYSKACELEN-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 77777777666 2222 4445555566666 677777777777777665544
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.54 E-value=8.7e-13 Score=107.00 Aligned_cols=166 Identities=8% Similarity=-0.008 Sum_probs=135.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHH
Q 038303 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVV 355 (461)
Q Consensus 276 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 355 (461)
+...|..+...+.+.|++++|++.|++..+.... +..++..+..+|...|++++|...++.... ..+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHH
Confidence 4567788888888888888888888888875322 557788888888889999999988888876 2334566677777
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhH
Q 038303 356 DMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDT 433 (461)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 433 (461)
..+...++++.|...+.+. ...| +...+..+...+...|++++|++.++++.+..|.++.+|..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8888889999999988887 3333 4556777777899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcC
Q 038303 434 NKIRDEIRRMG 444 (461)
Q Consensus 434 ~~~~~~m~~~g 444 (461)
.+.+++..+..
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999987753
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.54 E-value=1e-12 Score=120.06 Aligned_cols=195 Identities=9% Similarity=-0.032 Sum_probs=128.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHccC-----C-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CCH----
Q 038303 248 VGNAVINMYVKCGDVGIAIQVFNMLAY-----K-----DKISWSTVISGLAMNGCGRQALQLFSLMIINAVF-PDD---- 312 (461)
Q Consensus 248 ~~~~li~~~~~~g~~~~a~~~~~~~~~-----~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~---- 312 (461)
++..+...|...|++++|...+++..+ + ...+++.+...+...|++++|...+++..+.... ++.
T Consensus 145 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 224 (383)
T 3ulq_A 145 FFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMG 224 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 445566666666666666666655441 1 1245667777777888888888887776643111 111
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHhHhh---cCC-CCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CC-----Cc-hhh
Q 038303 313 VTFIALISACSHGGLVDQGLILFKAMSTV---YEI-VPQMQHYACVVDMYGRAGLLEEAEAFIREM-PI-----EA-EWS 381 (461)
Q Consensus 313 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-----~p-~~~ 381 (461)
.++..+...|...|++++|...+++..+. .+. +....++..+...|.+.|++++|...+++. .. .| ...
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 304 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 36777777788888888888888777651 122 233566777888888888888888888776 11 12 222
Q ss_pred HHHHHHHHHHhcCC---hHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 038303 382 VWGALLNACRIHRN---DEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 382 ~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 443 (461)
.+..+...+...|+ .++|..++++. ...+....++..++..|.+.|++++|...+++..+.
T Consensus 305 ~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 305 EFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34555555777777 66777777665 223444567888999999999999999999888654
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.53 E-value=8.5e-11 Score=113.38 Aligned_cols=418 Identities=9% Similarity=-0.029 Sum_probs=281.4
Q ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhC---CCCCceeHHHHHHHHHcCCC---hHHHHHHH
Q 038303 26 HQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV---VFPDVVSWTTIISGLSKCGF---HKEAIDMF 99 (461)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~~~---~~~a~~~~ 99 (461)
..+....++..+..++ -|..+|..++..+.+.+.++.+..+|+.+ .+.+...|...+..-.+.++ ++.+.++|
T Consensus 48 ~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 4455556777777665 48999999999999999999999999998 34456678888888888888 99999999
Q ss_pred hcC-CCC---CCchhHHHHHHHhcccch--------hHHHHHHHHHHHhh-cC-CCC-hhHHHHHHHHHH---------H
Q 038303 100 CGI-DVK---PNANTLVSVLSACSSLVS--------HKLGKAIHAHSLRN-LN-ENN-IILDNAILDFYI---------R 155 (461)
Q Consensus 100 ~~m-~~~---p~~~~~~~ll~~~~~~~~--------~~~a~~~~~~~~~~-~~-~~~-~~~~~~l~~~~~---------~ 155 (461)
+.. ... |+...|...+.-..+.++ .+.+.++|+..+.. |. .++ ...|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 998 333 888887777665444333 24456788877654 65 454 467887776543 2
Q ss_pred cCChhhHHHHHhcCCC-Cch---hHHH---HHHHHH----------HhcCChHHHHHHHHHHHhcC-CC-----------
Q 038303 156 CGSLASCGYLFVKMPK-RNV---VSWT---TMIGGY----------AERGFCKEAVSVFQEMEKTK-EA----------- 206 (461)
Q Consensus 156 ~g~~~~a~~~~~~~~~-~~~---~~~~---~li~~~----------~~~~~~~~a~~~~~~m~~~~-~~----------- 206 (461)
.++++.+..+|++... |.. .+|. .+.... -...+++.|...+.++...- ++
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 3457889999998876 321 2232 222111 01123344555555432210 01
Q ss_pred -----CCCh-------hhHHHHHHHhhccc-------hhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHH-
Q 038303 207 -----EPNE-------ATLVNVLSACSSIS-------ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI- 266 (461)
Q Consensus 207 -----~~~~-------~~~~~~l~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~- 266 (461)
++.. ..|...+.---..+ ..+.+..+|+.... .++-...+|-..+..+...|+.++|.
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~--~~p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQ--HVCFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH--HTTTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 1100 12222222221111 12345567888777 34446667777888888889999996
Q ss_pred HHHHHccC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC---------CCC------------HhHHHHHHHHH
Q 038303 267 QVFNMLAY--K-DKISWSTVISGLAMNGCGRQALQLFSLMIINAV---------FPD------------DVTFIALISAC 322 (461)
Q Consensus 267 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---------~p~------------~~~~~~ll~~~ 322 (461)
++|++... | +...|...+...-+.|++++|.++|+++.+... .|+ ...|...+...
T Consensus 365 ~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 365 KYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 99988763 3 455677788888899999999999999886420 142 23577777777
Q ss_pred HcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhc-CCHHHHHHHHHhC--CCCchhhHHHHHHHHHHhcCChHHH
Q 038303 323 SHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA-GLLEEAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMF 399 (461)
Q Consensus 323 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a 399 (461)
.+.|+.+.|..+|....+. ...+....|...+..-.+. ++.+.|.++|+.. ..+.+...|...+......|+.+.|
T Consensus 445 rR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~A 523 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQV 523 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHH
Confidence 7889999999999999873 1112233444333333344 4589999999988 2223444566777777888999999
Q ss_pred HHHHHHHhhcCCC---ChhHHHHHHHHHhccCChhhHHHHHHHHHHcCCcc
Q 038303 400 DRIRQDLVNKKGV---SVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447 (461)
Q Consensus 400 ~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 447 (461)
..+|++++...++ ....|...+..-.+.|+.+.+.++.+++.+.-...
T Consensus 524 R~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 524 KSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999999997763 45688888988899999999999999998876543
No 64
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.53 E-value=1.3e-12 Score=118.13 Aligned_cols=236 Identities=9% Similarity=-0.019 Sum_probs=192.5
Q ss_pred hhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCC-HHHHHHHHHHccC---CChhhHHHHHH
Q 038303 210 EATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGD-VGIAIQVFNMLAY---KDKISWSTVIS 285 (461)
Q Consensus 210 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~---~~~~~~~~l~~ 285 (461)
...|..+...+...|++++|...++.+.+ -.+-+..+|+.+..++...|+ +++|+..|+++.. .+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~--l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 34566777778889999999999999987 334456788899999999997 9999999999873 36788999999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhh-cCCH
Q 038303 286 GLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR-AGLL 364 (461)
Q Consensus 286 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~ 364 (461)
++...|++++|+..|+++.+.... +...|..+..++...|++++|+..++++.+ --+-+...|+.+..++.+ .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999986433 668899999999999999999999999988 234567888999999998 6665
Q ss_pred HHH-----HHHHHhC-CCCc-hhhHHHHHHHHHHhcC--ChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccC-------
Q 038303 365 EEA-----EAFIREM-PIEA-EWSVWGALLNACRIHR--NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD------- 428 (461)
Q Consensus 365 ~~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 428 (461)
++| +..+++. ...| +...|..+...+...| ++++|++.+.++ +..|.++.++..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 4777776 4444 4557787888888877 689999999998 788999999999999999875
Q ss_pred --ChhhHHHHHHHH-HHcCCccccCccc
Q 038303 429 --RWEDTNKIRDEI-RRMGLKKKTGCSW 453 (461)
Q Consensus 429 --~~~~A~~~~~~m-~~~g~~~~~~~~~ 453 (461)
.+++|+++++++ .+ +.|...-.|
T Consensus 331 ~~~~~~A~~~~~~l~~~--~DP~r~~~w 356 (382)
T 2h6f_A 331 EDILNKALELCEILAKE--KDTIRKEYW 356 (382)
T ss_dssp HHHHHHHHHHHHHHHHT--TCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHH--hCchhHHHH
Confidence 358999999998 44 344443333
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.51 E-value=5.7e-13 Score=119.16 Aligned_cols=268 Identities=12% Similarity=-0.005 Sum_probs=148.0
Q ss_pred HHHHhcccchhHHHHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCChhhHHHHHhcCCC---------CchhHHHHHH
Q 038303 114 VLSACSSLVSHKLGKAIHAHSLRNLNENN---IILDNAILDFYIRCGSLASCGYLFVKMPK---------RNVVSWTTMI 181 (461)
Q Consensus 114 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~li 181 (461)
....+...|++++|...++++.+..+... ...+..+...+...|++++|...+++..+ ....++..+.
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 34445666777777777777666543311 24556666777777777777777666532 1244566777
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCC----hhhHHHHHHHhhccch--------------------hhhHHHHHHHHH
Q 038303 182 GGYAERGFCKEAVSVFQEMEKTKEAEPN----EATLVNVLSACSSISA--------------------LSFGKYVHSYIS 237 (461)
Q Consensus 182 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~~~l~~~~~~~~--------------------~~~a~~~~~~~~ 237 (461)
..+...|++++|...+++..+.....++ ..++..+...+...|+ ++.|...++...
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 7777888888888887776553101111 2244444444555555 444444443332
Q ss_pred hhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CC---
Q 038303 238 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK--DKISWSTVISGLAMNGCGRQALQLFSLMIINAVF-PD--- 311 (461)
Q Consensus 238 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~--- 311 (461)
. +......+ ....+..+...+...|++++|...+++..+.... ++
T Consensus 171 ~-----------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 221 (338)
T 3ro2_A 171 S-----------------------------LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA 221 (338)
T ss_dssp H-----------------------------HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred H-----------------------------HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHH
Confidence 2 00000000 1224455555566666666666666655432100 11
Q ss_pred -HhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHhhcCCHHHHHHHHHhC-CC------Cc-
Q 038303 312 -DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ----MQHYACVVDMYGRAGLLEEAEAFIREM-PI------EA- 378 (461)
Q Consensus 312 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~p- 378 (461)
..++..+...+...|++++|...+++......-.++ ..++..+...+...|++++|...+++. .. .+
T Consensus 222 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 301 (338)
T 3ro2_A 222 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG 301 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHH
Confidence 125556666666677777777776665441111111 445666677777777777777777665 11 11
Q ss_pred hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 038303 379 EWSVWGALLNACRIHRNDEMFDRIRQDLVNKK 410 (461)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 410 (461)
...++..+...+...|++++|...++++.+..
T Consensus 302 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 302 EGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 12255566666777888888888888777643
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=2.4e-13 Score=127.49 Aligned_cols=192 Identities=8% Similarity=-0.106 Sum_probs=163.1
Q ss_pred CcchHHHHHHHHHHhcCCH-HHHHHHHHHccC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHH
Q 038303 244 VSNLVGNAVINMYVKCGDV-GIAIQVFNMLAY--K-DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALI 319 (461)
Q Consensus 244 ~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 319 (461)
.+...+..+...|...|++ ++|++.|++..+ | +...|..+...|...|++++|.+.|++..+. .|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 3556677777888888888 888888877652 3 5678888999999999999999999999885 47778888888
Q ss_pred HHHHcC---------CChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhc--------CCHHHHHHHHHhC-CCCc---
Q 038303 320 SACSHG---------GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA--------GLLEEAEAFIREM-PIEA--- 378 (461)
Q Consensus 320 ~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p--- 378 (461)
..+... |++++|+..|++..+ -.+.+...|..+..+|... |++++|...|++. ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 889998 999999999999987 2344578888899999888 9999999999998 4445
Q ss_pred -hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHH
Q 038303 379 -EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDE 439 (461)
Q Consensus 379 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 439 (461)
+...|..+...|...|++++|...|+++.+..|.+..++..+..++...|++++|.+.+.+
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6667888888899999999999999999999999999999999999999999999976544
No 67
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.49 E-value=4.1e-13 Score=124.00 Aligned_cols=266 Identities=12% Similarity=-0.017 Sum_probs=145.7
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccH----HHHHHHHHHHHhcCCHHHHHHHHhhCCC---------CCceeH
Q 038303 13 FTQALKACSLAHPHQKALEIHAHVIEYGHLHDI----FIQNSLLHFYVTVKDIFSAHQIFNSVVF---------PDVVSW 79 (461)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------~~~~~~ 79 (461)
+..+...+...|++++|...|+.+.+.+.. +. .++..+...|...|++++|...+++... .....+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 344555666777777787777777776433 22 3566666777777777777777766521 122445
Q ss_pred HHHHHHHHcCCChHHHHHHHhcC-------CCCC-CchhHHHHHHHhcccch-----------------hHHHHHHHHHH
Q 038303 80 TTIISGLSKCGFHKEAIDMFCGI-------DVKP-NANTLVSVLSACSSLVS-----------------HKLGKAIHAHS 134 (461)
Q Consensus 80 ~~li~~~~~~~~~~~a~~~~~~m-------~~~p-~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~~ 134 (461)
..+...|...|++++|++.+++. +-.| ...++..+...+...|+ +++|.+.+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 56666667777777777766655 1111 22344455555555566 55555555554
Q ss_pred HhhcCC-CChhHHHHHHHHHHHcCChhhHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC----
Q 038303 135 LRNLNE-NNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN---- 209 (461)
Q Consensus 135 ~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---- 209 (461)
.+.... .+.. ....++..+...+...|++++|...+++..+.....++
T Consensus 210 l~~~~~~~~~~---------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 262 (411)
T 4a1s_A 210 LKLMRDLGDRG---------------------------AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAE 262 (411)
T ss_dssp HHHHHHHTCHH---------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHcCCHH---------------------------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHH
Confidence 332100 0000 01123444444444444444444444444332100001
Q ss_pred hhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCC----CcchHHHHHHHHHHhcCCHHHHHHHHHHccCC---------C
Q 038303 210 EATLVNVLSACSSISALSFGKYVHSYISTRYDLS----VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---------D 276 (461)
Q Consensus 210 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------~ 276 (461)
...+..+...+...|++++|...++...+...-. ....++..+...|...|++++|...+++.... .
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 342 (411)
T 4a1s_A 263 RRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGE 342 (411)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHH
Confidence 1134444444445555555554444443311111 11345567777777888888888877766521 1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 038303 277 KISWSTVISGLAMNGCGRQALQLFSLMIIN 306 (461)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 306 (461)
..++..+...+...|++++|.+.+++..+.
T Consensus 343 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 343 ARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 346777888888889999999988888764
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.48 E-value=7.9e-12 Score=114.20 Aligned_cols=228 Identities=8% Similarity=-0.035 Sum_probs=156.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCC----ChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCc-----chHHHH
Q 038303 181 IGGYAERGFCKEAVSVFQEMEKTKEAEP----NEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS-----NLVGNA 251 (461)
Q Consensus 181 i~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~ 251 (461)
...+...|++++|...|++..+.-...+ ...++..+...+...|+++.|...+....+...-.++ ..+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 3445555666666666666544210111 1234455555555666666666665555442221111 345677
Q ss_pred HHHHHHhcCCHHHHHHHHHHccC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhc----CC-CCCHhHHHH
Q 038303 252 VINMYVKCGDVGIAIQVFNMLAY-----KD----KISWSTVISGLAMNGCGRQALQLFSLMIIN----AV-FPDDVTFIA 317 (461)
Q Consensus 252 li~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~ 317 (461)
+...|...|++++|...|++..+ ++ ..++..+...+...|++++|...+++..+. +. +....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 88888889999999888877652 11 246888889999999999999999988762 22 223467888
Q ss_pred HHHHHHcCCChHHHHHHHHHhHhhcC---CCCCcchHHHHHHHHhhcCC---HHHHHHHHHhCCCCchhh-HHHHHHHHH
Q 038303 318 LISACSHGGLVDQGLILFKAMSTVYE---IVPQMQHYACVVDMYGRAGL---LEEAEAFIREMPIEAEWS-VWGALLNAC 390 (461)
Q Consensus 318 ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~~-~~~~l~~~~ 390 (461)
+...+...|++++|...+++..+... .+.....+..+...+...|+ +++|..++++.+..|+.. .+..+...|
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 88999999999999999998766221 11223335678888889999 899999999996555444 566677779
Q ss_pred HhcCChHHHHHHHHHHhh
Q 038303 391 RIHRNDEMFDRIRQDLVN 408 (461)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~ 408 (461)
...|++++|...++++.+
T Consensus 350 ~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 999999999999999886
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.46 E-value=3.2e-13 Score=119.54 Aligned_cols=241 Identities=10% Similarity=0.053 Sum_probs=134.0
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHhcC------CCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhc-----C
Q 038303 173 NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTK------EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY-----D 241 (461)
Q Consensus 173 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~-----~ 241 (461)
+..++..+...+...|++++|..+++++.+.. ..+.....+..+...+...|+++.|...++...+.. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 34567888888889999999999998887631 012223334444444444444444444444443310 0
Q ss_pred CCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc------CCCC-CHhH
Q 038303 242 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN------AVFP-DDVT 314 (461)
Q Consensus 242 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~ 314 (461)
..|. ....+..+...+...|++++|...+++..+. +-.| ....
T Consensus 106 ~~~~------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 106 DHPA------------------------------VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp TCHH------------------------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CChH------------------------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 0000 1234555566666666666666666665543 1112 2245
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhc-----C-CCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CC---------Cc
Q 038303 315 FIALISACSHGGLVDQGLILFKAMSTVY-----E-IVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PI---------EA 378 (461)
Q Consensus 315 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---------~p 378 (461)
+..+...+...|++++|..+++++.... + .+....++..+...|...|++++|...++++ .. .+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 5666666777777777777777665520 1 1122345666677777777777777777665 11 11
Q ss_pred h-------hhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 038303 379 E-------WSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 379 ~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 443 (461)
. ...+..+...+...+.+.++...++......|....++..++.+|.+.|++++|.+.+++..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1 1112222233455666677777777777777778888999999999999999999999887653
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.44 E-value=8e-11 Score=103.92 Aligned_cols=216 Identities=6% Similarity=-0.032 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHhcCCCCCChhhHHHHHHHhh-------ccchh-------hhHHHHHHHHHhhcCCCC-cchHHHHHHHH
Q 038303 191 KEAVSVFQEMEKTKEAEPNEATLVNVLSACS-------SISAL-------SFGKYVHSYISTRYDLSV-SNLVGNAVINM 255 (461)
Q Consensus 191 ~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~-~~~~~~~li~~ 255 (461)
++|..+|++.... .+.+...|......+. ..|++ ++|..+|+...+ .+.| +...|..++..
T Consensus 33 ~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~--~~~p~~~~~~~~~~~~ 108 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS--TLLKKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHT--TTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHH--HhCcccHHHHHHHHHH
Confidence 4556666666553 3334444444444433 23443 555555555544 1223 23355666666
Q ss_pred HHhcCCHHHHHHHHHHccC--C-Chh-hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHH-HcCCChHH
Q 038303 256 YVKCGDVGIAIQVFNMLAY--K-DKI-SWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC-SHGGLVDQ 330 (461)
Q Consensus 256 ~~~~g~~~~a~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~~~ 330 (461)
+.+.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++..+... ++...|....... ...|++++
T Consensus 109 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 109 EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHH
T ss_pred HHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHH
Confidence 6666666666666666553 2 222 566666666666667777777766665432 2233333222221 12566777
Q ss_pred HHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-C---CCch--hhHHHHHHHHHHhcCChHHHHHHHH
Q 038303 331 GLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-P---IEAE--WSVWGALLNACRIHRNDEMFDRIRQ 404 (461)
Q Consensus 331 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~ 404 (461)
|..+|+...+. .+.+...|..++..+.+.|++++|..+|++. . ..|+ ...|..++....+.|+.+.|..+++
T Consensus 188 A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 188 AFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77777666652 2334556666666666667777777776666 1 2332 3355666666666677777777776
Q ss_pred HHhhcCCCC
Q 038303 405 DLVNKKGVS 413 (461)
Q Consensus 405 ~~~~~~~~~ 413 (461)
++.+..|.+
T Consensus 266 ~a~~~~p~~ 274 (308)
T 2ond_A 266 RRFTAFREE 274 (308)
T ss_dssp HHHHHTTTT
T ss_pred HHHHHcccc
Confidence 666655543
No 71
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.43 E-value=1e-10 Score=106.53 Aligned_cols=163 Identities=10% Similarity=-0.025 Sum_probs=78.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCC-CHhHHHHHHHHHHcCCChHHHHHHHHHhHhh---cCCCCCcch
Q 038303 279 SWSTVISGLAMNGCGRQALQLFSLMIIN----AVFP-DDVTFIALISACSHGGLVDQGLILFKAMSTV---YEIVPQMQH 350 (461)
Q Consensus 279 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~ 350 (461)
+++.+...+...|++++|.+.+++..+. +-.+ ...++..+..+|...|++++|...+++.... .+.+....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 3444445555555555555555544331 1000 1134445555555556666665555554431 022222445
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC----C---CCchhhHHHHHHHHHHhcCC---hHHHHHHHHHHhhcCCCChhHHHHH
Q 038303 351 YACVVDMYGRAGLLEEAEAFIREM----P---IEAEWSVWGALLNACRIHRN---DEMFDRIRQDLVNKKGVSVGTFALM 420 (461)
Q Consensus 351 ~~~l~~~~~~~g~~~~A~~~~~~~----~---~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l 420 (461)
+..+...+.+.|++++|...+++. . .+.....+..+...+...++ ..+|+..+++. ...+.....+..+
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~l 342 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHH
Confidence 555555666666666666665554 1 11112223333333445555 55555555442 1122334455666
Q ss_pred HHHHhccCChhhHHHHHHHHHH
Q 038303 421 SNTFAGADRWEDTNKIRDEIRR 442 (461)
Q Consensus 421 ~~~~~~~g~~~~A~~~~~~m~~ 442 (461)
+..|.+.|++++|...+++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777666543
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.42 E-value=6.4e-12 Score=101.75 Aligned_cols=162 Identities=12% Similarity=-0.025 Sum_probs=113.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHh
Q 038303 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359 (461)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 359 (461)
|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 4445555556666666666666555432 124455666666666677777777777666651 2334556666777777
Q ss_pred hcCCHHHHHHHHHhC-C-CCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHH
Q 038303 360 RAGLLEEAEAFIREM-P-IEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIR 437 (461)
Q Consensus 360 ~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 437 (461)
..|++++|.+.++++ . .+.+...+..+...+...|++++|...++++.+..|.++.++..++.++...|++++|.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777777766 2 22345566677777888889999999999988888888889999999999999999999999
Q ss_pred HHHHHcC
Q 038303 438 DEIRRMG 444 (461)
Q Consensus 438 ~~m~~~g 444 (461)
++..+..
T Consensus 168 ~~~~~~~ 174 (186)
T 3as5_A 168 KKANELD 174 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHcC
Confidence 9887654
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.42 E-value=3.1e-11 Score=110.01 Aligned_cols=305 Identities=10% Similarity=0.037 Sum_probs=215.6
Q ss_pred CCCCCchhHHHHHHHh--cccchhHHHHHHHHHHHhhc--CCCC--hhHHHHHHHH--HHHcCChhhHH---------HH
Q 038303 103 DVKPNANTLVSVLSAC--SSLVSHKLGKAIHAHSLRNL--NENN--IILDNAILDF--YIRCGSLASCG---------YL 165 (461)
Q Consensus 103 ~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~--~~~~g~~~~a~---------~~ 165 (461)
.+.|+...-..+-..+ ...+++++|.++++++.+.. .+.| ...|-.++.. ....+.++.+. ..
T Consensus 5 ~~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~ 84 (378)
T 3q15_A 5 QAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTEL 84 (378)
T ss_dssp -CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHH
Confidence 3455555555565565 78899999999999986642 2223 3334444432 12223333333 55
Q ss_pred HhcCCC---C-c-hh---HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC----hhhHHHHHHHhhccchhhhHHHHH
Q 038303 166 FVKMPK---R-N-VV---SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN----EATLVNVLSACSSISALSFGKYVH 233 (461)
Q Consensus 166 ~~~~~~---~-~-~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~~~l~~~~~~~~~~~a~~~~ 233 (461)
++.+.. + + .. .|......+...|++++|...|++..+.....++ ..++..+...+...|+++.|...+
T Consensus 85 l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~ 164 (378)
T 3q15_A 85 LETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI 164 (378)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 555432 1 1 11 2333455678899999999999999875312233 346777888899999999999999
Q ss_pred HHHHhhcCCCCc-----chHHHHHHHHHHhcCCHHHHHHHHHHccC-----CC----hhhHHHHHHHHHhcCChHHHHHH
Q 038303 234 SYISTRYDLSVS-----NLVGNAVINMYVKCGDVGIAIQVFNMLAY-----KD----KISWSTVISGLAMNGCGRQALQL 299 (461)
Q Consensus 234 ~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~ 299 (461)
....+...-.++ ..+++.+...|...|++++|.+.|++..+ ++ ..++..+...+...|++++|...
T Consensus 165 ~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~ 244 (378)
T 3q15_A 165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH 244 (378)
T ss_dssp HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 988763332222 44677889999999999999999987663 22 34688889999999999999999
Q ss_pred HHHHHh-----cCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCC---cchHHHHHHHHhhcCC---HHHHH
Q 038303 300 FSLMII-----NAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ---MQHYACVVDMYGRAGL---LEEAE 368 (461)
Q Consensus 300 ~~~m~~-----~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~ 368 (461)
+++..+ .... ...++..+...+.+.|++++|...+++..+...-.++ ...+..+...+...++ +++|.
T Consensus 245 ~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al 323 (378)
T 3q15_A 245 FQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLL 323 (378)
T ss_dssp HHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 999876 3322 3677888899999999999999999998773322122 3445666677778888 89999
Q ss_pred HHHHhCCCCchhh-HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 038303 369 AFIREMPIEAEWS-VWGALLNACRIHRNDEMFDRIRQDLVN 408 (461)
Q Consensus 369 ~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 408 (461)
..+++.+..|+.. .+..+...|...|+++.|...++++.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 324 SYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999986555444 455667779999999999999999875
No 74
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.41 E-value=1.4e-11 Score=99.76 Aligned_cols=167 Identities=10% Similarity=-0.016 Sum_probs=135.1
Q ss_pred cchHHHHHHHHHHhcCCHHHHHHHHHHccC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 038303 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAY--K-DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISA 321 (461)
Q Consensus 245 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 321 (461)
+..+|..+...|.+.|++++|.+.|++..+ | +...|..+...+.+.|++++|...+.+....... +...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 456778888889999999999999988763 3 6678888888999999999999999988875332 45667777778
Q ss_pred HHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHH
Q 038303 322 CSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMF 399 (461)
Q Consensus 322 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 399 (461)
+...++++.|...+..... ..+.+...+..+...|.+.|++++|++.|++. ...| +...|..+...+.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8889999999999988877 33455777888889999999999999999887 3334 455778888889999999999
Q ss_pred HHHHHHHhhcCCCCh
Q 038303 400 DRIRQDLVNKKGVSV 414 (461)
Q Consensus 400 ~~~~~~~~~~~~~~~ 414 (461)
+..|+++++..|.++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999998777553
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=2.2e-12 Score=114.09 Aligned_cols=240 Identities=10% Similarity=-0.012 Sum_probs=143.7
Q ss_pred ChhHHHHHHHHHHHcCChhhHHHHHhcCCC-----------CchhHHHHHHHHHHhcCChHHHHHHHHHHHhc------C
Q 038303 142 NIILDNAILDFYIRCGSLASCGYLFVKMPK-----------RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT------K 204 (461)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~ 204 (461)
+..++..+...+...|++++|..+|+++.+ ....++..+...+...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456788899999999999999999988764 13456888999999999999999999998764 2
Q ss_pred CCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhc-----CCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCChhh
Q 038303 205 EAEPNEATLVNVLSACSSISALSFGKYVHSYISTRY-----DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKIS 279 (461)
Q Consensus 205 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 279 (461)
..+.....+..+...+...|+++.|...++...+.. +..|. ....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~------------------------------~~~~ 155 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD------------------------------VAKQ 155 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH------------------------------HHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH------------------------------HHHH
Confidence 112234566666667777777777777777665521 11111 1223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc------CCCCC-HhHHHHHHHHHHcCCChHHHHHHHHHhHhhc------CCCC
Q 038303 280 WSTVISGLAMNGCGRQALQLFSLMIIN------AVFPD-DVTFIALISACSHGGLVDQGLILFKAMSTVY------EIVP 346 (461)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~ 346 (461)
+..+...+...|++++|.+.+++..+. +..|. ..++..+...+...|++++|...++++.+.. ...+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 444555555566666666666555442 11222 2445566666666777777777766665410 1111
Q ss_pred Ccc-------hHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 038303 347 QMQ-------HYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKG 411 (461)
Q Consensus 347 ~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 411 (461)
... .+..+...+...+.+.+|...++.. ...| ...++..+...|...|++++|...++++.+..|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 111 1222233344455566666666666 2333 445677788889999999999999998877544
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.40 E-value=4.3e-10 Score=102.24 Aligned_cols=156 Identities=9% Similarity=-0.075 Sum_probs=69.9
Q ss_pred HHHHHHHcCChhhHHHHHhcCCC----Cch----hHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCh----hhHHHH
Q 038303 149 ILDFYIRCGSLASCGYLFVKMPK----RNV----VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNE----ATLVNV 216 (461)
Q Consensus 149 l~~~~~~~g~~~~a~~~~~~~~~----~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~~~ 216 (461)
....+...|++++|...+++... .+. .+++.+...+...|++++|...+++........++. .++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34445566677666666555321 111 134455556666677777776666665421011111 112333
Q ss_pred HHHhhccchhhhHHHHHHHHHhhc---CCC--C-cchHHHHHHHHHHhcCCHHHHHHHHHHccC--C------ChhhHHH
Q 038303 217 LSACSSISALSFGKYVHSYISTRY---DLS--V-SNLVGNAVINMYVKCGDVGIAIQVFNMLAY--K------DKISWST 282 (461)
Q Consensus 217 l~~~~~~~~~~~a~~~~~~~~~~~---~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~------~~~~~~~ 282 (461)
...+...|+++.|...++...+.. +.. | ....+..+...+...|++++|...+++... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 344445555555555555444311 111 1 112333344444455555555555444321 0 0123334
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 038303 283 VISGLAMNGCGRQALQLFSLMI 304 (461)
Q Consensus 283 l~~~~~~~~~~~~a~~~~~~m~ 304 (461)
+...+...|++++|...+++..
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444455555555554443
No 77
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=1.1e-10 Score=103.09 Aligned_cols=214 Identities=8% Similarity=-0.052 Sum_probs=168.2
Q ss_pred hhHHHHHHHHHhhcCCCCcchHHHHHHHHHH-------hcCCH-------HHHHHHHHHccC---C-ChhhHHHHHHHHH
Q 038303 227 SFGKYVHSYISTRYDLSVSNLVGNAVINMYV-------KCGDV-------GIAIQVFNMLAY---K-DKISWSTVISGLA 288 (461)
Q Consensus 227 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~a~~~~~~~~~---~-~~~~~~~l~~~~~ 288 (461)
+.|..+|+..... .+.+...|..++..+. +.|++ ++|..+|++..+ | +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 5677788888773 3445556677776665 45886 899999998765 3 4568999999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCH-h-HHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHh-hcCCHH
Q 038303 289 MNGCGRQALQLFSLMIINAVFPDD-V-TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYG-RAGLLE 365 (461)
Q Consensus 289 ~~~~~~~a~~~~~~m~~~g~~p~~-~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~ 365 (461)
+.|++++|.++|++..+. .|+. . .|..+...+.+.|++++|..+|++..+ ..+++...|........ ..|+++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT--STTCCTHHHHHHHHHHHHTSCCHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999984 5543 3 788899999999999999999999987 22344555544433322 369999
Q ss_pred HHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcC--CC--ChhHHHHHHHHHhccCChhhHHHHHHH
Q 038303 366 EAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKK--GV--SVGTFALMSNTFAGADRWEDTNKIRDE 439 (461)
Q Consensus 366 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 439 (461)
+|..+|++. ...| +...|..++..+.+.|+.++|..+|+++.+.. +| ....|..++..+.+.|+.++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999988 2223 55678888888999999999999999999952 43 577899999999999999999999999
Q ss_pred HHHcCCc
Q 038303 440 IRRMGLK 446 (461)
Q Consensus 440 m~~~g~~ 446 (461)
+.+....
T Consensus 267 a~~~~p~ 273 (308)
T 2ond_A 267 RFTAFRE 273 (308)
T ss_dssp HHHHTTT
T ss_pred HHHHccc
Confidence 9876543
No 78
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.37 E-value=9.1e-12 Score=116.78 Aligned_cols=197 Identities=11% Similarity=-0.059 Sum_probs=93.3
Q ss_pred cHHHHHHHHHHHHhcCCH-HHHHHHHhhC---CCCCceeHHHHHHHHHcCCChHHHHHHHhcC-CCCCCchhHHHHHHHh
Q 038303 44 DIFIQNSLLHFYVTVKDI-FSAHQIFNSV---VFPDVVSWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSVLSAC 118 (461)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~-~~a~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~p~~~~~~~ll~~~ 118 (461)
+...+..+...+...|++ ++|.+.|++. .+.+...|..+...|...|++++|++.|++. ...|+...+..+...+
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~ 180 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVL 180 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444455555555 5555555544 1223344555555555555555555555554 4444444444444445
Q ss_pred ccc---------chhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHc----CChhhHHHHHhcCCCCchhHHHHHHHHHH
Q 038303 119 SSL---------VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRC----GSLASCGYLFVKMPKRNVVSWTTMIGGYA 185 (461)
Q Consensus 119 ~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~li~~~~ 185 (461)
... |++++|.+.+++.++..+. +...|..+..+|... |+
T Consensus 181 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~--------------------------- 232 (474)
T 4abn_A 181 RQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQ--------------------------- 232 (474)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTC---------------------------
T ss_pred HHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhcc---------------------------
Confidence 554 5555555555555544332 344444444444444 00
Q ss_pred hcCChHHHHHHHHHHHhcCCCC---CChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCH
Q 038303 186 ERGFCKEAVSVFQEMEKTKEAE---PNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 262 (461)
Q Consensus 186 ~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 262 (461)
..|++++|...|++..+. .+ .+...+..+..++...|++++|...++...+. .+.+...+..+..++...|++
T Consensus 233 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~ 308 (474)
T 4abn_A 233 NPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRL 308 (474)
T ss_dssp CHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHH
Confidence 004455555555555442 11 23444444445555555555555555554441 122233445555556666666
Q ss_pred HHHHHHHHHc
Q 038303 263 GIAIQVFNML 272 (461)
Q Consensus 263 ~~a~~~~~~~ 272 (461)
++|.+.+..+
T Consensus 309 ~eAi~~~~~~ 318 (474)
T 4abn_A 309 TSLLESKGKT 318 (474)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHHHhccc
Confidence 6666555554
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.36 E-value=2.2e-11 Score=118.89 Aligned_cols=162 Identities=12% Similarity=0.084 Sum_probs=129.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHH
Q 038303 277 KISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD-DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVV 355 (461)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 355 (461)
...|+.+...+.+.|++++|++.|++..+. .|+ ..++..+..+|.+.|++++|+..|++..+. -+-+...|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 456777777788888888888888887774 343 467777888888888888888888887761 223467788888
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhH
Q 038303 356 DMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDT 433 (461)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 433 (461)
.+|.+.|++++|++.|++. ...| +...|+.+...+...|++++|+..|+++++..|.+..++..++.+|...|++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 8888888888888888877 4444 4557788888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 038303 434 NKIRDEIRR 442 (461)
Q Consensus 434 ~~~~~~m~~ 442 (461)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998888755
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.34 E-value=7.3e-11 Score=99.23 Aligned_cols=191 Identities=9% Similarity=-0.027 Sum_probs=129.3
Q ss_pred cchHHHHHHHHHHhcCCHHHHHHHHHHccC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 038303 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAY----KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALIS 320 (461)
Q Consensus 245 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 320 (461)
++..+......+...|++++|...|+...+ ++...+..+..++...|++++|+..+++..+.... +...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 446667777788888888888888877652 45666666777888888888888888888774322 3466777777
Q ss_pred HHHcCCChHHHHHHHHHhHhhcCCCCCc-------chHHHHHHHHhhcCCHHHHHHHHHhC-CCCch---hhHHHHHHHH
Q 038303 321 ACSHGGLVDQGLILFKAMSTVYEIVPQM-------QHYACVVDMYGRAGLLEEAEAFIREM-PIEAE---WSVWGALLNA 389 (461)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~ 389 (461)
.+...|++++|+..+++..+. .+.+. ..|..+...+...|++++|...|++. ...|+ ...+..+...
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 788888888888888887762 22233 44666777777888888888888877 55555 3345555555
Q ss_pred HHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcCC
Q 038303 390 CRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445 (461)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 445 (461)
+... +...++++....+.+...|.... ....+.+++|...+++..+...
T Consensus 163 ~~~~-----~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 163 FYNN-----GADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHH-----HHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHH-----HHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC
Confidence 5433 34445556555555555544333 3345667999999999987643
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.34 E-value=1.9e-10 Score=104.52 Aligned_cols=258 Identities=12% Similarity=0.047 Sum_probs=162.3
Q ss_pred HhcccchhHHHHHHHHHHHhhcCCCCh----hHHHHHHHHHHHcCChhhHHHHHhcCCC-----Cc----hhHHHHHHHH
Q 038303 117 ACSSLVSHKLGKAIHAHSLRNLNENNI----ILDNAILDFYIRCGSLASCGYLFVKMPK-----RN----VVSWTTMIGG 183 (461)
Q Consensus 117 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~li~~ 183 (461)
.+...|++++|...+++.++.....+. ..++.+...+...|++++|...+++... .+ ..++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 344567777777777776655432222 1445566677777888888877776653 11 2335667788
Q ss_pred HHhcCChHHHHHHHHHHHhcCC---CC--C-ChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCC-C--cchHHHHHHH
Q 038303 184 YAERGFCKEAVSVFQEMEKTKE---AE--P-NEATLVNVLSACSSISALSFGKYVHSYISTRYDLS-V--SNLVGNAVIN 254 (461)
Q Consensus 184 ~~~~~~~~~a~~~~~~m~~~~~---~~--~-~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~-~--~~~~~~~li~ 254 (461)
+...|++++|...+++..+... .+ | ....+..+...+...|+++.|...++.......-. + ....+..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 8999999999999998765310 11 2 23455667778899999999999999987632211 1 2345777888
Q ss_pred HHHhcCCHHHHHHHHHHcc----CCCh-hhHHH-----HHHHHHhcCChHHHHHHHHHHHhcCCCCC---HhHHHHHHHH
Q 038303 255 MYVKCGDVGIAIQVFNMLA----YKDK-ISWST-----VISGLAMNGCGRQALQLFSLMIINAVFPD---DVTFIALISA 321 (461)
Q Consensus 255 ~~~~~g~~~~a~~~~~~~~----~~~~-~~~~~-----l~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~ 321 (461)
.+...|++++|...+++.. .++. ..+.. .+..+...|++++|...+++.......+. ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 9999999999999998764 2221 12222 22346678888888888877765332111 1234555666
Q ss_pred HHcCCChHHHHHHHHHhHhhc---CCCCCc-chHHHHHHHHhhcCCHHHHHHHHHhC
Q 038303 322 CSHGGLVDQGLILFKAMSTVY---EIVPQM-QHYACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 322 ~~~~~~~~~a~~~~~~~~~~~---~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
+...|++++|...++...... +..++. ..+..+..++...|+.++|...+++.
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 777777777777777664411 111111 24444555566666666666666655
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.32 E-value=2.2e-10 Score=96.24 Aligned_cols=206 Identities=6% Similarity=-0.043 Sum_probs=158.0
Q ss_pred CCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccC--C-ChhhHHHH
Q 038303 207 EPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY--K-DKISWSTV 283 (461)
Q Consensus 207 ~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l 283 (461)
+.|+..+......+...|++++|...|+...+ ....++...+..+..++...|++++|...|++..+ | +...|..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLK-LTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHh-ccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 45667888888899999999999999999988 34336667777799999999999999999998874 3 45678899
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCH-------hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCC---cchHHH
Q 038303 284 ISGLAMNGCGRQALQLFSLMIINAVFPDD-------VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ---MQHYAC 353 (461)
Q Consensus 284 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ 353 (461)
...+...|++++|+..+++..+.... +. ..|..+...+...|++++|+..|++..+ ..|+ ...+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~ 158 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHH
Confidence 99999999999999999999885322 33 4577777888999999999999999977 3454 567777
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CC-CchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038303 354 VVDMYGRAGLLEEAEAFIREM-PI-EAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424 (461)
Q Consensus 354 l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (461)
+..+|...|+. .++++ .. ..+...+.... ....+.+++|+..++++.+..|.++.+...+....
T Consensus 159 l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 159 LGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 88887665543 33333 11 11223333222 34567789999999999999999988887776654
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.28 E-value=4.9e-11 Score=103.65 Aligned_cols=197 Identities=12% Similarity=0.115 Sum_probs=120.8
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHccC-------C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhc------CC
Q 038303 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAY-------K----DKISWSTVISGLAMNGCGRQALQLFSLMIIN------AV 308 (461)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~ 308 (461)
..++..+...|...|++++|...+++..+ + ...++..+...+...|++++|.+.+++..+. .-
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 44556666777777777777777665541 1 2345677777777788888888877776653 11
Q ss_pred CC-CHhHHHHHHHHHHcCCChHHHHHHHHHhHhhc-----C-CCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-C-----
Q 038303 309 FP-DDVTFIALISACSHGGLVDQGLILFKAMSTVY-----E-IVPQMQHYACVVDMYGRAGLLEEAEAFIREM-P----- 375 (461)
Q Consensus 309 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~----- 375 (461)
.| ...++..+...+...|++++|...+++..+.. + .+....++..+...|.+.|++++|...+++. .
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 12 23567777777888888888888888776620 1 1223456777788888888888888888766 1
Q ss_pred ----CCchhh-HHHHHHHHHHhcC------ChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHH
Q 038303 376 ----IEAEWS-VWGALLNACRIHR------NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442 (461)
Q Consensus 376 ----~~p~~~-~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 442 (461)
..+... .+..+...+...+ .+..+...++......|....++..++.+|.+.|++++|..++++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112222 2222222232222 233333334333334455677888999999999999999999988765
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.28 E-value=2e-10 Score=92.81 Aligned_cols=165 Identities=10% Similarity=-0.073 Sum_probs=135.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHccCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHH
Q 038303 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYK---DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACS 323 (461)
Q Consensus 247 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 323 (461)
..+..+...+...|++++|...++++.+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34566778888999999999999988743 56778888899999999999999999988763 235677888888899
Q ss_pred cCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CC-CchhhHHHHHHHHHHhcCChHHHHH
Q 038303 324 HGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PI-EAEWSVWGALLNACRIHRNDEMFDR 401 (461)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~ 401 (461)
..|++++|...++++.. ..+.+...+..+...+...|++++|...++++ .. +.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAE--ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHh--cCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999887 24456778888899999999999999999987 22 2345677888888999999999999
Q ss_pred HHHHHhhcCCCCh
Q 038303 402 IRQDLVNKKGVSV 414 (461)
Q Consensus 402 ~~~~~~~~~~~~~ 414 (461)
.++++.+..|.+.
T Consensus 166 ~~~~~~~~~~~~~ 178 (186)
T 3as5_A 166 HFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCch
Confidence 9999988665544
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.22 E-value=5.9e-10 Score=97.45 Aligned_cols=186 Identities=9% Similarity=-0.006 Sum_probs=109.6
Q ss_pred HHHhcCCHHHHHHHHHHccCC-----C----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CC----HhHHHHHHH
Q 038303 255 MYVKCGDVGIAIQVFNMLAYK-----D----KISWSTVISGLAMNGCGRQALQLFSLMIINAVF-PD----DVTFIALIS 320 (461)
Q Consensus 255 ~~~~~g~~~~a~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~ll~ 320 (461)
.|...|++++|.+.|++...- + ..+|+.+...|...|++++|+..+++..+.... .+ ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666666666554321 1 345667777777777777777777766542110 01 245666777
Q ss_pred HHHcC-CChHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCch---h-----hHHHHH
Q 038303 321 ACSHG-GLVDQGLILFKAMSTVYEIVPQ----MQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE---W-----SVWGAL 386 (461)
Q Consensus 321 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~-----~~~~~l 386 (461)
.|... |++++|+..|++..+...-..+ ..++..+...+.+.|++++|...|++. ...|+ . ..+..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 77775 8888888777776652110011 345667777777888888888887776 22221 1 134555
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCChh-----HHHHHHHHHh--ccCChhhHHHHHHHH
Q 038303 387 LNACRIHRNDEMFDRIRQDLVNKKGVSVG-----TFALMSNTFA--GADRWEDTNKIRDEI 440 (461)
Q Consensus 387 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~--~~g~~~~A~~~~~~m 440 (461)
..++...|++++|+..+++..+..|.... .+..++.++. ..+++++|+..++++
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 56677778888888888887776554333 2344555554 445677777776544
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.18 E-value=9e-09 Score=88.30 Aligned_cols=244 Identities=9% Similarity=-0.012 Sum_probs=164.5
Q ss_pred HHHHHHcCChhhHHHHHhcCCCCch-hHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhh
Q 038303 150 LDFYIRCGSLASCGYLFVKMPKRNV-VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 228 (461)
Q Consensus 150 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 228 (461)
++-..-.|++..++.-..++...+. ..-..+.+++...|++... .. ..|....+..+...+. .+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~-~~~~~~a~~~la~~~~-~~---- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DP-TSKLGKVLDLYVQFLD-TK---- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CS-SSTTHHHHHHHHHHHT-TT----
T ss_pred HHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CC-CCHHHHHHHHHHHHhc-cc----
Confidence 3445667999999887776654222 2333455788888887742 11 4444444444444442 22
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 038303 229 GKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-----DKISWSTVISGLAMNGCGRQALQLFSLM 303 (461)
Q Consensus 229 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m 303 (461)
+...++.... .+ .++......+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 a~~~l~~l~~-~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLK-DK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTT-TS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6777777766 33 445555567888889999999999999887543 4456777888999999999999999999
Q ss_pred HhcCCCC-----CHhHHHHHHHHHHc----CCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 038303 304 IINAVFP-----DDVTFIALISACSH----GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 304 ~~~g~~p-----~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
.+. .| +..+...+..++.. .+++..|..+|+++... .|+..+-..++.++.+.|++++|.+.++.+
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 874 56 35666667666332 34899999999998662 244333344455888899999999998865
Q ss_pred -CC-----------CchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHH
Q 038303 375 -PI-----------EAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTF 417 (461)
Q Consensus 375 -~~-----------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 417 (461)
.. +.+..+...++......|+ .|.+++.++.+..|.++.+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 22 3355556455555445565 78899999998888887554
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.17 E-value=9.7e-10 Score=83.44 Aligned_cols=128 Identities=12% Similarity=0.133 Sum_probs=85.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CC-CchhhHHHHHHHHHHh
Q 038303 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PI-EAEWSVWGALLNACRI 392 (461)
Q Consensus 315 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~ 392 (461)
+..+...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|...++++ .. +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 344455555556666666666655541 2233445555666666666666666666665 11 2234456666667778
Q ss_pred cCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcC
Q 038303 393 HRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444 (461)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 444 (461)
.|++++|...++++.+..|.+..++..++.++.+.|++++|...++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888888777778888888888888888888888888887643
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.16 E-value=1.4e-08 Score=87.07 Aligned_cols=175 Identities=13% Similarity=0.065 Sum_probs=103.8
Q ss_pred HHHHHHHccC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHhHHHHHHHHHHcCCChHHHHHHHHHhHh
Q 038303 265 AIQVFNMLAY---KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP-DDVTFIALISACSHGGLVDQGLILFKAMST 340 (461)
Q Consensus 265 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 340 (461)
|...|++... ++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5556655542 334444566666777777777777777765544312 345666666777777777777777777755
Q ss_pred hcCCCC-----CcchHHHHHHHH--hhcC--CHHHHHHHHHhC-CCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhc-
Q 038303 341 VYEIVP-----QMQHYACVVDMY--GRAG--LLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNK- 409 (461)
Q Consensus 341 ~~~~~~-----~~~~~~~l~~~~--~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 409 (461)
..| +..+...|+.++ ...| ++++|..+|+++ ...|+..+...++.++...|++++|+..++.+.+.
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 234 234444444442 2223 677777777777 33344333334444666777777777777765543
Q ss_pred ---------CCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcC
Q 038303 410 ---------KGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444 (461)
Q Consensus 410 ---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 444 (461)
.|.++.++..++......|+ +|.++++++.+..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 36667777666555555665 6677777766543
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.15 E-value=1.4e-09 Score=94.30 Aligned_cols=163 Identities=12% Similarity=-0.013 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHccC-------C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhc------CCC
Q 038303 247 LVGNAVINMYVKCGDVGIAIQVFNMLAY-------K----DKISWSTVISGLAMNGCGRQALQLFSLMIIN------AVF 309 (461)
Q Consensus 247 ~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~ 309 (461)
.++..+...|...|++++|.+.+++... + ....+..+...+...|++++|...+++..+. +-.
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3455666666666666666666655441 1 2345677777888888888888888887664 112
Q ss_pred CC-HhHHHHHHHHHHcCCChHHHHHHHHHhHhhc------CCCCC-cchHHHHHHHHhhc------CCHHHHHHHHHhCC
Q 038303 310 PD-DVTFIALISACSHGGLVDQGLILFKAMSTVY------EIVPQ-MQHYACVVDMYGRA------GLLEEAEAFIREMP 375 (461)
Q Consensus 310 p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~-~~~~~~l~~~~~~~------g~~~~A~~~~~~~~ 375 (461)
|+ ..++..+...|...|++++|...+++..+.. ...+. ...+..+...+... ..+..+...++...
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence 32 3567778888888999999998888876521 12233 23333333333322 22444445555552
Q ss_pred -CCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 038303 376 -IEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNK 409 (461)
Q Consensus 376 -~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 409 (461)
..| ...++..+...|...|++++|...++++.+.
T Consensus 246 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 223 3446777788899999999999999988764
No 90
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.14 E-value=2.3e-09 Score=104.67 Aligned_cols=159 Identities=14% Similarity=-0.039 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHH
Q 038303 176 SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINM 255 (461)
Q Consensus 176 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 255 (461)
+|+.|...+.+.|++++|++.|++..+. .+-+...+..+..++.+.|++++|...|++..+. .+-+...+..+..+
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 4444444444445555555555444442 1222344444444444444555554444444431 11234456667777
Q ss_pred HHhcCCHHHHHHHHHHccC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHhHHHHHHHHHHcCCChHHH
Q 038303 256 YVKCGDVGIAIQVFNMLAY--K-DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFP-DDVTFIALISACSHGGLVDQG 331 (461)
Q Consensus 256 ~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a 331 (461)
|.+.|++++|++.|++..+ | +...|+.+...+...|++++|++.|++..+. .| +...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHH
Confidence 7777777777777776552 2 4567777777788888888888888887774 34 346777777778888888887
Q ss_pred HHHHHHhHh
Q 038303 332 LILFKAMST 340 (461)
Q Consensus 332 ~~~~~~~~~ 340 (461)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776644
No 91
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.13 E-value=6.1e-09 Score=87.13 Aligned_cols=185 Identities=9% Similarity=-0.077 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHccC--CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH--hHHHHH
Q 038303 247 LVGNAVINMYVKCGDVGIAIQVFNMLAY--KD----KISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD--VTFIAL 318 (461)
Q Consensus 247 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l 318 (461)
..+..+...+.+.|++++|...|+.+.+ |+ ...+..+..++.+.|++++|+..|++..+....... ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3445566677778888888888877763 32 235666777778888888888888887764322111 133333
Q ss_pred HHHHHc------------------CCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCchh
Q 038303 319 ISACSH------------------GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 380 (461)
Q Consensus 319 l~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~ 380 (461)
..++.. .|++++|...|+.+.+ ..+-+...+....... ... ... .
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~l~----~~~------~~~-----~ 147 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKRLV----FLK------DRL-----A 147 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHHHH----HHH------HHH-----H
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHHHH----HHH------HHH-----H
Confidence 444432 3455556665555554 1111222211111000 000 000 0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCh---hHHHHHHHHHhccCChhhHHHHHHHHHHcCCccc
Q 038303 381 SVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV---GTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448 (461)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 448 (461)
.....+...+.+.|++++|+..++++++..|.++ .++..++.+|.+.|++++|.+.++.+...+....
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 0112344558899999999999999999888875 5799999999999999999999999988765443
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.11 E-value=4.7e-09 Score=90.11 Aligned_cols=185 Identities=10% Similarity=-0.066 Sum_probs=118.0
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHccC--C-C---hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCC-HhHHHH
Q 038303 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAY--K-D---KISWSTVISGLAMNGCGRQALQLFSLMIINAV-FPD-DVTFIA 317 (461)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~~ 317 (461)
...+..+...+.+.|++++|...|+.+.+ | + ...+..+..++.+.|++++|...|++..+... .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 34445566667777777777777777663 2 2 34566677777777777777777777776432 112 244555
Q ss_pred HHHHHHc--------CCChHHHHHHHHHhHhhcCCCCCcchH-----------------HHHHHHHhhcCCHHHHHHHHH
Q 038303 318 LISACSH--------GGLVDQGLILFKAMSTVYEIVPQMQHY-----------------ACVVDMYGRAGLLEEAEAFIR 372 (461)
Q Consensus 318 ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~ 372 (461)
+..++.. .|++++|...|+++.+. .+.+.... ..+...|.+.|++++|...|+
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 6666666 77778888877777662 22222223 445777888888888888888
Q ss_pred hC-CCCch----hhHHHHHHHHHHhc----------CChHHHHHHHHHHhhcCCCCh---hHHHHHHHHHhccCChhh
Q 038303 373 EM-PIEAE----WSVWGALLNACRIH----------RNDEMFDRIRQDLVNKKGVSV---GTFALMSNTFAGADRWED 432 (461)
Q Consensus 373 ~~-~~~p~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~ 432 (461)
++ ...|+ ...+..+..+|... |++++|+..++++.+..|.++ .+...+...+.+.|++++
T Consensus 173 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 173 AVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 77 22232 33555566666654 788888888888888777774 344455555555555444
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.10 E-value=5.7e-09 Score=91.16 Aligned_cols=171 Identities=8% Similarity=-0.092 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHccCC-----C----hhhHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCC-C----
Q 038303 247 LVGNAVINMYVKCGDVGIAIQVFNMLAYK-----D----KISWSTVISGLAMN-GCGRQALQLFSLMIINAVFP-D---- 311 (461)
Q Consensus 247 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~----~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~g~~p-~---- 311 (461)
.+++.+..+|.+.|++++|...+++..+- + ..+++.+...|... |++++|+..|++..+..... +
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 34555666666666666666666554421 1 24577777788885 88888888888876532110 1
Q ss_pred HhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCc-----chHHHHHHHHhhcCCHHHHHHHHHhC-CCCchhh----
Q 038303 312 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQM-----QHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS---- 381 (461)
Q Consensus 312 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~---- 381 (461)
..++..+...+...|++++|+..|++..+...-.+.. ..|..+..++...|++++|...+++. .+.|+..
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 2457777888888888888888888887722111221 14566777888888999999888887 4444432
Q ss_pred --HHHHHHHHHH--hcCChHHHHHHHHHHhhcCCCChhHH
Q 038303 382 --VWGALLNACR--IHRNDEMFDRIRQDLVNKKGVSVGTF 417 (461)
Q Consensus 382 --~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~ 417 (461)
.+..++.++. ..+++++|+..|+.+....|.....+
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 2333444553 44667777777777666555443333
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.07 E-value=7.1e-09 Score=88.98 Aligned_cols=170 Identities=8% Similarity=-0.049 Sum_probs=135.1
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---HhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCC-cch
Q 038303 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD---DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ-MQH 350 (461)
Q Consensus 275 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 350 (461)
.+...+..+...+.+.|++++|...|+++.+.... + ...+..+..+|...|++++|...|+...+...-.|. ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 35666777888899999999999999999986422 2 567888888999999999999999999883221222 456
Q ss_pred HHHHHHHHhh--------cCCHHHHHHHHHhC-CCCchh-hHH-----------------HHHHHHHHhcCChHHHHHHH
Q 038303 351 YACVVDMYGR--------AGLLEEAEAFIREM-PIEAEW-SVW-----------------GALLNACRIHRNDEMFDRIR 403 (461)
Q Consensus 351 ~~~l~~~~~~--------~g~~~~A~~~~~~~-~~~p~~-~~~-----------------~~l~~~~~~~~~~~~a~~~~ 403 (461)
+..+..++.. .|++++|...|++. ...|+. ... ..+...|...|++++|+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 7778888888 99999999999988 333332 222 34456689999999999999
Q ss_pred HHHhhcCCC---ChhHHHHHHHHHhcc----------CChhhHHHHHHHHHHcCC
Q 038303 404 QDLVNKKGV---SVGTFALMSNTFAGA----------DRWEDTNKIRDEIRRMGL 445 (461)
Q Consensus 404 ~~~~~~~~~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~ 445 (461)
+++++..|. .+..+..++.+|.+. |++++|...++++.+...
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 999998776 456899999999876 899999999999987643
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.05 E-value=1.4e-09 Score=106.55 Aligned_cols=169 Identities=9% Similarity=-0.085 Sum_probs=123.2
Q ss_pred HhcCCHHHHHHHHHHcc-----------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcC
Q 038303 257 VKCGDVGIAIQVFNMLA-----------YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325 (461)
Q Consensus 257 ~~~g~~~~a~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 325 (461)
...|++++|.+.+++.. ..+...+..+...+...|++++|++.+++..+.... +...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHc
Confidence 56788888888887765 224566777777888888888888888888775322 456777777778888
Q ss_pred CChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHH
Q 038303 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIR 403 (461)
Q Consensus 326 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 403 (461)
|++++|+..|++..+ --+.+...+..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|+..+
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888888776 223356677778888888888888 8888776 3333 4456777777788888888888888
Q ss_pred HHHhhcCCCChhHHHHHHHHHhccCC
Q 038303 404 QDLVNKKGVSVGTFALMSNTFAGADR 429 (461)
Q Consensus 404 ~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (461)
+++.+..|.+..++..++.++...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 88888888888888888888766554
No 96
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.04 E-value=4.6e-07 Score=84.85 Aligned_cols=203 Identities=11% Similarity=-0.055 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHH-HHHH
Q 038303 191 KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA-IQVF 269 (461)
Q Consensus 191 ~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~ 269 (461)
+.+..+|+++... .+.+...|...+..+.+.|+.+.|..+++.... . +.+...+. .|....+.++. ..+.
T Consensus 196 ~Rv~~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~-~--P~~~~l~~----~y~~~~e~~~~~~~l~ 266 (493)
T 2uy1_A 196 SRMHFIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE-M--SDGMFLSL----YYGLVMDEEAVYGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CCSSHHHH----HHHHHTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-C--CCcHHHHH----HHHhhcchhHHHHHHH
Confidence 4567788888875 556677777777778888999999999999988 3 33333322 22222111121 1122
Q ss_pred HHcc--C-------C---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHH-HcCCChHHHHHHHH
Q 038303 270 NMLA--Y-------K---DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC-SHGGLVDQGLILFK 336 (461)
Q Consensus 270 ~~~~--~-------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~ 336 (461)
+... . + ....|...+....+.++.+.|..+|++. +. ..++...|......- ...++.+.|..+|+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 2111 0 1 1245666677777788899999999998 32 122334443222211 12346999999999
Q ss_pred HhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 038303 337 AMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVN 408 (461)
Q Consensus 337 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 408 (461)
...+.. +-++..+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..++++...
T Consensus 345 ~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 345 SGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 988843 3334556677888888999999999999983 2466777777777788999999998888875
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=7.4e-09 Score=78.44 Aligned_cols=130 Identities=12% Similarity=0.132 Sum_probs=77.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHH
Q 038303 279 SWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMY 358 (461)
Q Consensus 279 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 358 (461)
.|..+...+...|++++|..+++++.+... .+...+..+...+...|++++|...++++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 345555566666666666666666655432 23455555666666666666666666666551 233445556666666
Q ss_pred hhcCCHHHHHHHHHhC-CCC-chhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 038303 359 GRAGLLEEAEAFIREM-PIE-AEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKG 411 (461)
Q Consensus 359 ~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 411 (461)
...|++++|.+.++++ ... .+...+..+...+...|++++|...++++.+..|
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 6667777777666665 222 2344555566666777777777777777665544
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.03 E-value=8.6e-09 Score=89.70 Aligned_cols=176 Identities=5% Similarity=-0.136 Sum_probs=134.9
Q ss_pred HHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhc
Q 038303 263 GIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 342 (461)
Q Consensus 263 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 342 (461)
+.....+......+...+..+...+.+.|++++|...|++..+.... +...+..+...+...|++++|...++.+..
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-- 179 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPL-- 179 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCch--
Confidence 34445555555445566777888888999999999999998885322 457788888889999999999999988866
Q ss_pred CCCCCcchHHH-HHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC--hhHH
Q 038303 343 EIVPQMQHYAC-VVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVS--VGTF 417 (461)
Q Consensus 343 ~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~ 417 (461)
..|+...... ....+.+.++.++|...+++. ...| +...+..+...+...|++++|+..++++.+..|.+ ...+
T Consensus 180 -~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 180 -QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp -GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred -hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 2344333222 233366778888888888887 3334 45677788888999999999999999999988877 8899
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHH
Q 038303 418 ALMSNTFAGADRWEDTNKIRDEIRR 442 (461)
Q Consensus 418 ~~l~~~~~~~g~~~~A~~~~~~m~~ 442 (461)
..++.+|...|+.++|...+++...
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999998887643
No 99
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.00 E-value=9.5e-10 Score=85.45 Aligned_cols=141 Identities=5% Similarity=-0.133 Sum_probs=97.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCC-HhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCC
Q 038303 285 SGLAMNGCGRQALQLFSLMIINAVFPD-DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363 (461)
Q Consensus 285 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 363 (461)
..+...|++++|++.++..... .|+ ...+..+...|.+.|++++|++.|++..+ --+-+...|..+..+|.+.|+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCc
Confidence 3444556777777777776542 222 24455667777788888888888887776 223456777778888888888
Q ss_pred HHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHH-HHHHHhhcCCCChhHHHHHHHHHhccCC
Q 038303 364 LEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDR-IRQDLVNKKGVSVGTFALMSNTFAGADR 429 (461)
Q Consensus 364 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (461)
+++|...|++. ...| +...+..+...+.+.|+.++|.+ +++++.+..|.++.+|......+.+.|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888777 4444 34567777777888888765544 4588888888888888888888777764
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.99 E-value=4.5e-08 Score=80.89 Aligned_cols=173 Identities=8% Similarity=-0.108 Sum_probs=123.6
Q ss_pred HHHHHHHcc-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCC----ChHHHHHHHHHhH
Q 038303 265 AIQVFNMLA-YKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGG----LVDQGLILFKAMS 339 (461)
Q Consensus 265 a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~ 339 (461)
|.+.|++.. ..+...+..+...+...+++++|++.|++..+.| +...+..+...|.. + ++++|...|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344444333 2356666677777777788888888888877754 45666666666666 5 7888888888876
Q ss_pred hhcCCCCCcchHHHHHHHHhh----cCCHHHHHHHHHhC-CCCch---hhHHHHHHHHHHh----cCChHHHHHHHHHHh
Q 038303 340 TVYEIVPQMQHYACVVDMYGR----AGLLEEAEAFIREM-PIEAE---WSVWGALLNACRI----HRNDEMFDRIRQDLV 407 (461)
Q Consensus 340 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 407 (461)
+ . .+...+..|...|.. .+++++|.++|++. ...|. ...+..|...|.. .++.++|...|++..
T Consensus 81 ~-~---g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 E-A---GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp H-T---TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred H-C---CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 6 2 245566677777766 77888888888887 33332 5667777777776 778899999999988
Q ss_pred hcCCCChhHHHHHHHHHhcc-C-----ChhhHHHHHHHHHHcCCc
Q 038303 408 NKKGVSVGTFALMSNTFAGA-D-----RWEDTNKIRDEIRRMGLK 446 (461)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g~~ 446 (461)
+. +.++..+..|+..|... | ++++|...+++..+.|..
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 76 55666888888888654 3 889999999988887753
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.97 E-value=2.8e-08 Score=87.48 Aligned_cols=219 Identities=10% Similarity=-0.021 Sum_probs=135.8
Q ss_pred cCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHH
Q 038303 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266 (461)
Q Consensus 187 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 266 (461)
.|++++|.+++++..+.. +.. .+...++++.|...|... ...|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~~---------~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KTS---------FMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CCC---------SSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--ccc---------ccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHH
Confidence 466777777777776531 111 011135555555555543 34566677777777
Q ss_pred HHHHHccCC-----C----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC---CCC--HhHHHHHHHHHHcCCChHHHH
Q 038303 267 QVFNMLAYK-----D----KISWSTVISGLAMNGCGRQALQLFSLMIINAV---FPD--DVTFIALISACSHGGLVDQGL 332 (461)
Q Consensus 267 ~~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~~~~~~a~ 332 (461)
..|.+...- + ..+|+.+...|...|++++|+..+++..+.-. .|. ..++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 777655421 1 34677777888888888888888887654311 111 2566677777777 8888888
Q ss_pred HHHHHhHhhcCCCC----CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc------h-hhHHHHHHHHHHhcCChHHHH
Q 038303 333 ILFKAMSTVYEIVP----QMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA------E-WSVWGALLNACRIHRNDEMFD 400 (461)
Q Consensus 333 ~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p------~-~~~~~~l~~~~~~~~~~~~a~ 400 (461)
..|++......-.. ...++..+...|.+.|++++|...|++. ...| . ...+..+...+...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88887765211111 1456777888888888888888888877 2111 1 114445555567778899999
Q ss_pred HHHHHHhhcCCCChh-----HHHHHHHHHhccCChhhHHH
Q 038303 401 RIRQDLVNKKGVSVG-----TFALMSNTFAGADRWEDTNK 435 (461)
Q Consensus 401 ~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~ 435 (461)
..+++.. ..|.... ....++.++ ..|+.+.+.+
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9988888 6654322 344555555 4566655555
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.96 E-value=7.9e-09 Score=99.51 Aligned_cols=160 Identities=14% Similarity=0.021 Sum_probs=119.0
Q ss_pred cCCHHHHHHHHHHccCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHH
Q 038303 259 CGDVGIAIQVFNMLAYK---DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILF 335 (461)
Q Consensus 259 ~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 335 (461)
.|++++|.+.|++..+. +...|..+...+...|++++|.+.+++..+... .+...+..+...|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47888999999887743 567888899999999999999999999988532 24678888888999999999999999
Q ss_pred HHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhc---CChHHHHHHHHHHhhcC
Q 038303 336 KAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIH---RNDEMFDRIRQDLVNKK 410 (461)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 410 (461)
++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|.+.++++.+..
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 998872 3445778888999999999999999999987 3334 455677788888888 99999999999999988
Q ss_pred CCChhHHHHHH
Q 038303 411 GVSVGTFALMS 421 (461)
Q Consensus 411 ~~~~~~~~~l~ 421 (461)
|.+...|..+.
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 88887777666
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.93 E-value=1.1e-08 Score=81.79 Aligned_cols=158 Identities=7% Similarity=-0.048 Sum_probs=90.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHH-Hh
Q 038303 281 STVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM-YG 359 (461)
Q Consensus 281 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 359 (461)
..+...+.+.|++++|...+++..+... -+...+..+...+...|++++|+..++..... .|+...+..+... +.
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHH
Confidence 3344455555666666666655544311 13345555555566666666666666555441 1222222111111 11
Q ss_pred hcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC--hhHHHHHHHHHhccCChhhHHH
Q 038303 360 RAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVS--VGTFALMSNTFAGADRWEDTNK 435 (461)
Q Consensus 360 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~ 435 (461)
..+...+|...+++. ...| +...+..+...+...|++++|+..++++.+..|.. ...+..++.++...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 112223455666655 3334 35566666777778888888888888888776543 5578888888888888888888
Q ss_pred HHHHHHH
Q 038303 436 IRDEIRR 442 (461)
Q Consensus 436 ~~~~m~~ 442 (461)
.+++...
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877643
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.90 E-value=1.5e-07 Score=92.37 Aligned_cols=169 Identities=13% Similarity=-0.027 Sum_probs=112.0
Q ss_pred hccchhhhHHHHHHHHH--------hhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccC---CChhhHHHHHHHHHh
Q 038303 221 SSISALSFGKYVHSYIS--------TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY---KDKISWSTVISGLAM 289 (461)
Q Consensus 221 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~ 289 (461)
...|++++|...++... + ..+.+...+..+...|...|++++|.+.|++..+ .+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 56677777777777665 2 2233455667777777778888888887777663 355677777777778
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHH
Q 038303 290 NGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEA 369 (461)
Q Consensus 290 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 369 (461)
.|++++|.+.|++..+.... +...+..+..++...|++++ +..|++..+ --+.+...|..+..++.+.|++++|.+
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888887774321 34667777777777888888 777777766 223345667777777888888888888
Q ss_pred HHHhC-CCCch-hhHHHHHHHHHHhcCC
Q 038303 370 FIREM-PIEAE-WSVWGALLNACRIHRN 395 (461)
Q Consensus 370 ~~~~~-~~~p~-~~~~~~l~~~~~~~~~ 395 (461)
.|++. ...|+ ...+..+..++...++
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 88877 45554 3345555555544333
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.90 E-value=7e-08 Score=79.50 Aligned_cols=157 Identities=9% Similarity=-0.030 Sum_probs=104.9
Q ss_pred HHHHhcCCHHHHHHHHHHccCC---ChhhHHH----------------HHHHHHhcCChHHHHHHHHHHHhcCCCCCHhH
Q 038303 254 NMYVKCGDVGIAIQVFNMLAYK---DKISWST----------------VISGLAMNGCGRQALQLFSLMIINAVFPDDVT 314 (461)
Q Consensus 254 ~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 314 (461)
..+...|++++|...|++..+. +...|.. +..++.+.|++++|+..|++..+.... +...
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~ 90 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN-NVDC 90 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHH
Confidence 3344555666666555555422 2223333 778888899999999999998885322 5577
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCC--HHHHHHHHHhC-CCCchhhHHHHHHHHHH
Q 038303 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL--LEEAEAFIREM-PIEAEWSVWGALLNACR 391 (461)
Q Consensus 315 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~-~~~p~~~~~~~l~~~~~ 391 (461)
+..+...+...|++++|+..|++..+ --+.+...+..+...|...|+ .+.+...++.. ...|....+.....++.
T Consensus 91 ~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~ 168 (208)
T 3urz_A 91 LEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKL 168 (208)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 88888888899999999999998887 233456777778777765543 34556666665 22233333444445566
Q ss_pred hcCChHHHHHHHHHHhhcCCCC
Q 038303 392 IHRNDEMFDRIRQDLVNKKGVS 413 (461)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~ 413 (461)
..|++++|+..|+++++..|.+
T Consensus 169 ~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 169 FTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHTHHHHHHHHHHHTTTSCCH
T ss_pred HccCHHHHHHHHHHHHHhCCCH
Confidence 7888999999999999887753
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.89 E-value=1.6e-08 Score=88.94 Aligned_cols=196 Identities=8% Similarity=-0.091 Sum_probs=146.7
Q ss_pred ccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHh-cCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHH
Q 038303 222 SISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVK-CGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLF 300 (461)
Q Consensus 222 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 300 (461)
..|++++|..++++..+... .+ +.+ .++++.|...|+.. ...|...|++++|...+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~--~~----------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK--TS----------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC--CC----------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc--cc----------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHH
Confidence 35788889999888876222 11 112 57888888887654 56788899999999999
Q ss_pred HHHHhcCC----CC-CHhHHHHHHHHHHcCCChHHHHHHHHHhHhhc---CCCC-CcchHHHHHHHHhhcCCHHHHHHHH
Q 038303 301 SLMIINAV----FP-DDVTFIALISACSHGGLVDQGLILFKAMSTVY---EIVP-QMQHYACVVDMYGRAGLLEEAEAFI 371 (461)
Q Consensus 301 ~~m~~~g~----~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 371 (461)
.+..+... .+ -..+|..+...|...|++++|+..|++..... |-.. ...++..+...|.. |++++|+..+
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 98765321 11 13578888889999999999999999876521 1111 14577788889988 9999999999
Q ss_pred HhC-CCCc-------hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC------hhHHHHHHHHHhccCChhhHHHHH
Q 038303 372 REM-PIEA-------EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVS------VGTFALMSNTFAGADRWEDTNKIR 437 (461)
Q Consensus 372 ~~~-~~~p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~ 437 (461)
++. ...| ...++..+...+...|++++|+..++++.+..+.+ ...+..++.++...|++++|...+
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 987 2111 13467778888999999999999999999854322 236777888888999999999999
Q ss_pred HHHH
Q 038303 438 DEIR 441 (461)
Q Consensus 438 ~~m~ 441 (461)
++..
T Consensus 219 ~~al 222 (307)
T 2ifu_A 219 RESY 222 (307)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9987
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.88 E-value=2.2e-08 Score=82.50 Aligned_cols=180 Identities=11% Similarity=-0.022 Sum_probs=116.9
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHcCCChH
Q 038303 14 TQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHK 93 (461)
Q Consensus 14 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 93 (461)
-.....+...|++++|...|+...+..+. +...|.. ........ ......+.+..++.+.|+++
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~-----~~~~~~~~----------~~~~~~~~lg~~~~~~g~~~ 71 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYW-----TNVDKNSE----------ISSKLATELALAYKKNRNYD 71 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHH-----HHSCTTSH----------HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHH-----hhhcchhh----------hhHHHHHHHHHHHHHCCCHH
Confidence 33445567788888888888888875421 2222221 00010000 01112344677778888888
Q ss_pred HHHHHHhcC-CCCC-CchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC--hhhHHHHHhcC
Q 038303 94 EAIDMFCGI-DVKP-NANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGS--LASCGYLFVKM 169 (461)
Q Consensus 94 ~a~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~ 169 (461)
+|+..|++. ...| +...+..+...+...|++++|...|++.++..+. +...+..+...|...|+ .+.+...++..
T Consensus 72 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~ 150 (208)
T 3urz_A 72 KAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKL 150 (208)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 888888877 5556 4566777777888888888888888888887655 67777778877765543 45667777777
Q ss_pred CCCchh--HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhH
Q 038303 170 PKRNVV--SWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATL 213 (461)
Q Consensus 170 ~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 213 (461)
..++.. .+..+..++...|++++|...|++..+ ..|+....
T Consensus 151 ~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~---l~P~~~~~ 193 (208)
T 3urz_A 151 SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL---RFPSTEAQ 193 (208)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT---TSCCHHHH
T ss_pred hCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCHHHH
Confidence 765543 344456667778899999999999987 66775443
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.87 E-value=4.1e-08 Score=94.50 Aligned_cols=147 Identities=9% Similarity=-0.094 Sum_probs=88.6
Q ss_pred cchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCC---ChhhHHHHHHHHHhcCChHHHHHH
Q 038303 223 ISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DKISWSTVISGLAMNGCGRQALQL 299 (461)
Q Consensus 223 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~ 299 (461)
.|++++|...+++..+ ..+.+...+..+...|.+.|++++|.+.|++..+. +...|..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3566777777777655 22233556677777777777777777777776532 455677777777777777777777
Q ss_pred HHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhc---CCHHHHHHHHHhC
Q 038303 300 FSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA---GLLEEAEAFIREM 374 (461)
Q Consensus 300 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 374 (461)
+++..+... .+...+..+..++...|++++|.+.+++..+. .+.+...+..+...+... |+.++|.+.+++.
T Consensus 80 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 80 LQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 777776432 24566777777777777777777777777662 233456666777777777 7777777777766
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.87 E-value=6.5e-08 Score=77.32 Aligned_cols=153 Identities=8% Similarity=-0.062 Sum_probs=82.9
Q ss_pred HHHHHHHHcCChhhHHHHHhcCCC---CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHH-hhcc
Q 038303 148 AILDFYIRCGSLASCGYLFVKMPK---RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA-CSSI 223 (461)
Q Consensus 148 ~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~-~~~~ 223 (461)
.+...+.+.|++++|...|++..+ .+...+..+...+...|++++|...+++.... .|+.......... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhh
Confidence 344455555666666666655553 23445555555566666666666666655442 2222221111111 1111
Q ss_pred chhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCC-----hhhHHHHHHHHHhcCChHHHHH
Q 038303 224 SALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD-----KISWSTVISGLAMNGCGRQALQ 298 (461)
Q Consensus 224 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~ 298 (461)
+....+...++...+ -.+.+...+..+...+...|++++|...|+++.+.+ ...+..+...+...|+.++|..
T Consensus 88 ~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 88 AAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred cccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 122234555555544 122234556667777777777777777777765322 3366777777777777777777
Q ss_pred HHHHHHh
Q 038303 299 LFSLMII 305 (461)
Q Consensus 299 ~~~~m~~ 305 (461)
.|++...
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776543
No 110
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.86 E-value=2e-07 Score=81.37 Aligned_cols=163 Identities=6% Similarity=-0.047 Sum_probs=112.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-----hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCC----cc
Q 038303 279 SWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD-----VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ----MQ 349 (461)
Q Consensus 279 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 349 (461)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|+..+++......-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445566777888888888888877664322111 12334455567788888888888877652111111 34
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC-------CCCch--hhHHHHHHHHHHhcCChHHHHHHHHHHhhcCC------CCh
Q 038303 350 HYACVVDMYGRAGLLEEAEAFIREM-------PIEAE--WSVWGALLNACRIHRNDEMFDRIRQDLVNKKG------VSV 414 (461)
Q Consensus 350 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~ 414 (461)
+++.+...|...|++++|...++++ +..+. ..++..+...|...|++++|+..++++.+..+ .-.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7778888888889998888888776 11221 24677777888999999999999998876321 126
Q ss_pred hHHHHHHHHHhccCChhhH-HHHHHHHH
Q 038303 415 GTFALMSNTFAGADRWEDT-NKIRDEIR 441 (461)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 441 (461)
.+|..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6888999999999999999 77677654
No 111
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.86 E-value=7.9e-07 Score=77.55 Aligned_cols=161 Identities=6% Similarity=-0.072 Sum_probs=117.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCC-CCCHh----HHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCC----cchHH
Q 038303 282 TVISGLAMNGCGRQALQLFSLMIINAV-FPDDV----TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ----MQHYA 352 (461)
Q Consensus 282 ~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 352 (461)
..+..+...|++++|..++++..+... .|+.. .+..+...+...+++++|+..++.......-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888999999999988876422 22211 2334555667778999999999988772111222 23688
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC-------C-Cch-hhHHHHHHHHHHhcCChHHHHHHHHHHhhcC------CCChhHH
Q 038303 353 CVVDMYGRAGLLEEAEAFIREMP-------I-EAE-WSVWGALLNACRIHRNDEMFDRIRQDLVNKK------GVSVGTF 417 (461)
Q Consensus 353 ~l~~~~~~~g~~~~A~~~~~~~~-------~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~ 417 (461)
.+...|...|++++|...++++- . .+. ..++..+...|.+.|++++|+..++++.+.. +.-..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88889999999999999888771 1 122 2267778888999999999999999988732 1226789
Q ss_pred HHHHHHHhccCC-hhhHHHHHHHHHH
Q 038303 418 ALMSNTFAGADR-WEDTNKIRDEIRR 442 (461)
Q Consensus 418 ~~l~~~~~~~g~-~~~A~~~~~~m~~ 442 (461)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999988754
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.86 E-value=5.1e-09 Score=81.27 Aligned_cols=124 Identities=9% Similarity=-0.009 Sum_probs=101.9
Q ss_pred HHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCCh
Q 038303 319 ISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRND 396 (461)
Q Consensus 319 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 396 (461)
...+...|++++|+..++.... ..+-+...+..+...|.+.|++++|.+.|++. ...| +...|..+...+...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 3445567889999999988765 22234566778899999999999999999998 4444 566788888889999999
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHH-HHHHHHcC
Q 038303 397 EMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKI-RDEIRRMG 444 (461)
Q Consensus 397 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~g 444 (461)
++|+..|+++++..|.++.++..++.+|.+.|++++|.+. +++..+..
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999887765 57777643
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.86 E-value=2.8e-07 Score=76.87 Aligned_cols=184 Identities=13% Similarity=0.061 Sum_probs=126.2
Q ss_pred hhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCc-chHHHHHHHHHHhcCCHHHHHHHHHHccC--CCh-h---hHHH
Q 038303 210 EATLVNVLSACSSISALSFGKYVHSYISTRYDLSVS-NLVGNAVINMYVKCGDVGIAIQVFNMLAY--KDK-I---SWST 282 (461)
Q Consensus 210 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~-~---~~~~ 282 (461)
...+......+...|++++|...|+.+.+.....+. ...+..+..+|.+.|++++|...|+++.+ |+. . .+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 345556677788999999999999999884333332 35678889999999999999999999873 322 1 3444
Q ss_pred HHHHHHh------------------cCChHHHHHHHHHHHhcCCCCCHh-HHHHHHHHHHcCCChHHHHHHHHHhHhhcC
Q 038303 283 VISGLAM------------------NGCGRQALQLFSLMIINAVFPDDV-TFIALISACSHGGLVDQGLILFKAMSTVYE 343 (461)
Q Consensus 283 l~~~~~~------------------~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 343 (461)
+..++.. .|++++|...|+++.+. .|+.. ....... ...+...+..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~~--- 148 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLAK--- 148 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHHH---
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHHH---
Confidence 5555543 57899999999999885 34442 2221111 0111111111
Q ss_pred CCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCch----hhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCh
Q 038303 344 IVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE----WSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414 (461)
Q Consensus 344 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 414 (461)
....+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|+..++.+....|.+.
T Consensus 149 ------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 149 ------YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp ------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred ------HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 1234567788899999999999887 33333 24567777889999999999999998887766553
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.85 E-value=1.2e-07 Score=82.31 Aligned_cols=154 Identities=8% Similarity=-0.070 Sum_probs=72.2
Q ss_pred HHHHHHHHHHcCChhhHHHHHhcCCC---CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHH-HHHhh
Q 038303 146 DNAILDFYIRCGSLASCGYLFVKMPK---RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNV-LSACS 221 (461)
Q Consensus 146 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~-l~~~~ 221 (461)
+..+...+.+.|++++|...|++..+ .+...+..+...+...|++++|...+++... ..|+....... ...+.
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL---QDQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---GGCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---hhcchHHHHHHHHHHHH
Confidence 33444444444444444444444432 2333444444444444444444444444433 22222211111 11133
Q ss_pred ccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccC--CC---hhhHHHHHHHHHhcCChHHH
Q 038303 222 SISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY--KD---KISWSTVISGLAMNGCGRQA 296 (461)
Q Consensus 222 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~---~~~~~~l~~~~~~~~~~~~a 296 (461)
..++.+.+...++.... ..+.+...+..+...|...|++++|...|.++.+ |+ ...+..++..+...|+.++|
T Consensus 197 ~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred hhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 33444444444444433 1222344455566666666666666666665552 21 34566666666666666666
Q ss_pred HHHHHHHH
Q 038303 297 LQLFSLMI 304 (461)
Q Consensus 297 ~~~~~~m~ 304 (461)
...+++..
T Consensus 275 ~~~~r~al 282 (287)
T 3qou_A 275 ASXYRRQL 282 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665543
No 115
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.84 E-value=4.4e-06 Score=72.36 Aligned_cols=159 Identities=9% Similarity=0.012 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHccC---CChhhHHHHHHHHHhcCChH--HHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCC------h
Q 038303 260 GDVGIAIQVFNMLAY---KDKISWSTVISGLAMNGCGR--QALQLFSLMIINAVFPDDVTFIALISACSHGGL------V 328 (461)
Q Consensus 260 g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~------~ 328 (461)
+++++++.+++.+.+ .|...|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.-...+.+.+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 556666666666553 24445555555555566665 666666666665433 45555555545555444 5
Q ss_pred HHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHH-HHHHHHhC-CC----CchhhHHHHHHHHHHhcCChHHHHHH
Q 038303 329 DQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE-AEAFIREM-PI----EAEWSVWGALLNACRIHRNDEMFDRI 402 (461)
Q Consensus 329 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~~~~~~a~~~ 402 (461)
+++++.++.+.. -.+-|...|+.+...+.+.|+..+ +..+..+. .. ..+...+..+...+.+.|+.++|.++
T Consensus 203 ~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 556666655554 233445555555555555555333 33344443 11 12333444455555555555555555
Q ss_pred HHHHhh-cCCCChhHHHHHH
Q 038303 403 RQDLVN-KKGVSVGTFALMS 421 (461)
Q Consensus 403 ~~~~~~-~~~~~~~~~~~l~ 421 (461)
++.+.+ .+|.....|...+
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHHH
Confidence 555554 3455444444433
No 116
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.83 E-value=4.5e-07 Score=84.90 Aligned_cols=369 Identities=9% Similarity=-0.072 Sum_probs=212.2
Q ss_pred hhC-CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCceeHHHHHHHHHcCCC-hHHHHH
Q 038303 22 LAH-PHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF--PDVVSWTTIISGLSKCGF-HKEAID 97 (461)
Q Consensus 22 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~-~~~a~~ 97 (461)
+.| ++..|..+|+.+.+.= |. |+++.+..+|++... |++..|...+.-..+.+. .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 345 3777777777776632 22 899999999998843 788888888876666553 345556
Q ss_pred HHhcC----CCCC-CchhHHHHHHHhc----ccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhc
Q 038303 98 MFCGI----DVKP-NANTLVSVLSACS----SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK 168 (461)
Q Consensus 98 ~~~~m----~~~p-~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 168 (461)
+|+.. |..| +...|...+..+. ..++.+.+.++|++.+......-...|...... .+......+..++.+
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~ 148 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGD 148 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHH
Confidence 66655 5444 5566666666554 357888999999999874211111222222211 111112222222211
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CChhhHHHHHHHhhcc-------chhhhHHHHHHHHHhhc
Q 038303 169 MPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAE-PNEATLVNVLSACSSI-------SALSFGKYVHSYISTRY 240 (461)
Q Consensus 169 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~~~l~~~~~~-------~~~~~a~~~~~~~~~~~ 240 (461)
. .+.+..|..+++++... .+ .+...|...+.--... +..+.+..+|+.+..
T Consensus 149 ---------------~--~~~y~~ar~~y~~~~~~--~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~-- 207 (493)
T 2uy1_A 149 ---------------T--LPIFQSSFQRYQQIQPL--IRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILD-- 207 (493)
T ss_dssp ---------------H--HHHHHHHHHHHHHHHHH--HHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH--
T ss_pred ---------------H--hHHHHHHHHHHHHHHHH--HhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHH--
Confidence 1 12234444444444331 11 1222333333322111 113456678888777
Q ss_pred CCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccC-CCh-hhHHHHHHHHHhcCChHHHHHHHHHHHhcC---------CC
Q 038303 241 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDK-ISWSTVISGLAMNGCGRQALQLFSLMIINA---------VF 309 (461)
Q Consensus 241 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g---------~~ 309 (461)
..+.+..+|...+..+.+.|+.++|..++++... |+. ..|. .|+...+.++. ++.+.+.- ..
T Consensus 208 ~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~ 280 (493)
T 2uy1_A 208 SFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKV 280 (493)
T ss_dssp HTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhh
Confidence 3445567788888888899999999999987653 322 1222 22222222222 22222210 01
Q ss_pred C---CHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhc-CCHHHHHHHHHhC-CCCch-hhHH
Q 038303 310 P---DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA-GLLEEAEAFIREM-PIEAE-WSVW 383 (461)
Q Consensus 310 p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~-~~~p~-~~~~ 383 (461)
+ ....|...+....+.++.+.|..+|+.. ...+ .+...|...+..-... ++.+.|..+|+.. ..-|+ +..+
T Consensus 281 ~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~ 357 (493)
T 2uy1_A 281 FSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLK 357 (493)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHH
Confidence 1 1244666666666778899999999998 4122 2334443322222223 3699999999987 11122 3345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHH
Q 038303 384 GALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442 (461)
Q Consensus 384 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 442 (461)
...+.-..+.|+.+.|..+|+++. .....|...+..-...|+.+.+..++++...
T Consensus 358 ~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 358 EEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 556666778899999999999973 3577888888888888999999999988864
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.83 E-value=6e-08 Score=80.18 Aligned_cols=129 Identities=11% Similarity=-0.130 Sum_probs=103.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHH
Q 038303 279 SWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMY 358 (461)
Q Consensus 279 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 358 (461)
.+..+...+...|++++|...+++. +.|+...+..+..++...|++++|+..|++.... .+.+...+..+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 4556677888899999999999877 3567888888999999999999999999988872 345677888889999
Q ss_pred hhcCCHHHHHHHHHhC-CCCc-----------------hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 038303 359 GRAGLLEEAEAFIREM-PIEA-----------------EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVS 413 (461)
Q Consensus 359 ~~~g~~~~A~~~~~~~-~~~p-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 413 (461)
...|++++|...|++. ...| ....+..+..++...|++++|...++++.+..|.+
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 9999999999999887 2222 22567777777889999999999999998877765
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.83 E-value=2.8e-07 Score=76.08 Aligned_cols=129 Identities=11% Similarity=-0.058 Sum_probs=109.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCCh
Q 038303 249 GNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328 (461)
Q Consensus 249 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 328 (461)
+..+...+...|++++|...|++...++...|..+...+...|++++|+..+++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 35667778899999999999999988888999999999999999999999999998864 23567888899999999999
Q ss_pred HHHHHHHHHhHhhcCCCCCc----------------chHHHHHHHHhhcCCHHHHHHHHHhC-CCCchh
Q 038303 329 DQGLILFKAMSTVYEIVPQM----------------QHYACVVDMYGRAGLLEEAEAFIREM-PIEAEW 380 (461)
Q Consensus 329 ~~a~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 380 (461)
++|...|+...+. .+.+. ..+..+..+|.+.|++++|...|++. ...|+.
T Consensus 88 ~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 88 DLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 9999999998872 22222 67888999999999999999999998 555654
No 119
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.83 E-value=1.9e-06 Score=74.69 Aligned_cols=191 Identities=8% Similarity=0.084 Sum_probs=142.9
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHccCC---ChhhHHHHHHHH----Hhc---CChHHHHHHHHHHHhcCCCCCHhHHH
Q 038303 249 GNAVINMYVKCG--DVGIAIQVFNMLAYK---DKISWSTVISGL----AMN---GCGRQALQLFSLMIINAVFPDDVTFI 316 (461)
Q Consensus 249 ~~~li~~~~~~g--~~~~a~~~~~~~~~~---~~~~~~~l~~~~----~~~---~~~~~a~~~~~~m~~~g~~p~~~~~~ 316 (461)
++.--..+...| ++++++++++.+... +...|+.-...+ ... +++++++++++++.+...+ +..+++
T Consensus 70 Wn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~ 148 (306)
T 3dra_A 70 WIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWS 148 (306)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 344444445555 788888888777632 445555544444 444 7899999999999986544 668888
Q ss_pred HHHHHHHcCCChH--HHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCC------HHHHHHHHHhC--CCCchhhHHHHH
Q 038303 317 ALISACSHGGLVD--QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL------LEEAEAFIREM--PIEAEWSVWGAL 386 (461)
Q Consensus 317 ~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~--~~~p~~~~~~~l 386 (461)
.-...+.+.|.++ +++++++++.+ .-+-|-..|+.-...+.+.|+ ++++++.++++ ...-|...|+..
T Consensus 149 ~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~ 226 (306)
T 3dra_A 149 YRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYL 226 (306)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHH
Confidence 7777788888888 99999999988 334566667666666666666 88999998887 333467778888
Q ss_pred HHHHHhcCCh-HHHHHHHHHHhhcC---CCChhHHHHHHHHHhccCChhhHHHHHHHHHH
Q 038303 387 LNACRIHRND-EMFDRIRQDLVNKK---GVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442 (461)
Q Consensus 387 ~~~~~~~~~~-~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 442 (461)
...+.+.|+. +.+..+.+++.+.. +.++.++..++.+|.+.|+.++|.++++.+.+
T Consensus 227 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 227 LGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 7778777774 44667888777654 78899999999999999999999999999865
No 120
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.81 E-value=2.8e-08 Score=76.70 Aligned_cols=97 Identities=10% Similarity=-0.028 Sum_probs=77.1
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHh
Q 038303 348 MQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425 (461)
Q Consensus 348 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (461)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++.+..|.++.+|..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 456666777788888888888888877 3334 45567777777888888888888888888888888888888888888
Q ss_pred ccCChhhHHHHHHHHHHcC
Q 038303 426 GADRWEDTNKIRDEIRRMG 444 (461)
Q Consensus 426 ~~g~~~~A~~~~~~m~~~g 444 (461)
+.|++++|...|++..+..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 8888888888888887754
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.79 E-value=7.8e-08 Score=71.91 Aligned_cols=108 Identities=6% Similarity=-0.120 Sum_probs=60.9
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHH
Q 038303 314 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACR 391 (461)
Q Consensus 314 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 391 (461)
.+......|.+.|++++|+..|++..+ -.+.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 444455556666666666666666554 12334555555666666666666666666555 2222 3344555555566
Q ss_pred hcCChHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 038303 392 IHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423 (461)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 423 (461)
..|++++|++.|+++++..|.+..++..+..+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 66666666666666666666666655555443
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.79 E-value=1.3e-07 Score=74.53 Aligned_cols=128 Identities=7% Similarity=-0.097 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHH
Q 038303 313 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNAC 390 (461)
Q Consensus 313 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 390 (461)
..+..+...+...|++++|...|+.... ..+.+...+..+...+...|++++|...+++. ...| +...+..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3455556666777777777777777766 22345666777777777778888888777776 2223 445667777778
Q ss_pred HhcCChHHHHHHHHHHhhcCCCChhHHHHHHHH--HhccCChhhHHHHHHHHHH
Q 038303 391 RIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT--FAGADRWEDTNKIRDEIRR 442 (461)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 442 (461)
...|++++|...++++.+..|.+...+..+..+ +.+.|++++|...+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888899999999999888888887777554444 7788999999998887644
No 123
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.79 E-value=3.4e-07 Score=75.54 Aligned_cols=156 Identities=10% Similarity=-0.078 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccc----hhhhHHHHHHHHHhhcCCCCcchHH
Q 038303 174 VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS----ALSFGKYVHSYISTRYDLSVSNLVG 249 (461)
Q Consensus 174 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 249 (461)
..++..+...|...+++++|..+|++..+.| +...+..+-..+.. + +.++|...++...+ .+ +...+
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-~g---~~~a~ 88 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-AG---SKSGE 88 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-TT---CHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-CC---CHHHH
Confidence 3344444444444455555555555544432 22233333333333 2 34444444444433 11 23334
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHccCCC-----hhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHhHHH
Q 038303 250 NAVINMYVK----CGDVGIAIQVFNMLAYKD-----KISWSTVISGLAM----NGCGRQALQLFSLMIINAVFPDDVTFI 316 (461)
Q Consensus 250 ~~li~~~~~----~g~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~ 316 (461)
..|...|.. .+++++|..+|++..+.+ ...+..|...|.. .+++++|+..|++..+. ..+...+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~ 166 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEY 166 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHH
Confidence 445555544 566666666666665432 3556666666666 56677777777776664 12334455
Q ss_pred HHHHHHHcC-C-----ChHHHHHHHHHhHh
Q 038303 317 ALISACSHG-G-----LVDQGLILFKAMST 340 (461)
Q Consensus 317 ~ll~~~~~~-~-----~~~~a~~~~~~~~~ 340 (461)
.|...|... | ++++|...|+...+
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 555555432 2 66777777766665
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.73 E-value=1.1e-06 Score=76.66 Aligned_cols=160 Identities=9% Similarity=-0.083 Sum_probs=117.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHccC--C-Ch------hhHHHHHHHHHhcCChHHHHHHHHHHHhcCC---CCC--HhH
Q 038303 249 GNAVINMYVKCGDVGIAIQVFNMLAY--K-DK------ISWSTVISGLAMNGCGRQALQLFSLMIINAV---FPD--DVT 314 (461)
Q Consensus 249 ~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~~~ 314 (461)
+...+..+...|++++|.+.++...+ + .. ..+..+...+...|++++|+..+++..+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34567778889999999998876542 1 11 2244456667788999999999999875321 122 347
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCC-----cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCch-------hh
Q 038303 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQ-----MQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE-------WS 381 (461)
Q Consensus 315 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------~~ 381 (461)
++.+...|...|++++|...|++..+.....|+ ..++..+...|.+.|++++|...+++. ...++ ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 888888999999999999999988732111222 257888999999999999999999887 22122 45
Q ss_pred HHHHHHHHHHhcCChHHH-HHHHHHHhh
Q 038303 382 VWGALLNACRIHRNDEMF-DRIRQDLVN 408 (461)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 408 (461)
++..+...|...|++++| ...++++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 677788889999999999 787888765
No 125
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.72 E-value=8.8e-08 Score=82.95 Aligned_cols=191 Identities=10% Similarity=-0.100 Sum_probs=124.6
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHcc--CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 038303 246 NLVGNAVINMYVKCGDVGIAIQVFNMLA--YK-DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISAC 322 (461)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 322 (461)
...+..+...+.+.|++++|...|++.. .| +...|..+..++.+.|++++|...+++..+... .+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 3455667777888888888888887765 23 567788888888888999999999888887532 2456777888888
Q ss_pred HcCCChHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHhhcCCHHHHHHHHHhCCCCchhhHHHHHHHHHHhcCChHHHHH
Q 038303 323 SHGGLVDQGLILFKAMSTVYEIVPQ-MQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDR 401 (461)
Q Consensus 323 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 401 (461)
...|++++|...|+...+.. |+ ...+...+....+..+...... .......++......+ ..+ ..|+.++|.+
T Consensus 83 ~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~ 156 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERELE 156 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHHH
Confidence 88999999999888876621 21 1111111221111111111111 1112222333322222 222 2688899999
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHhcc-CChhhHHHHHHHHHHc
Q 038303 402 IRQDLVNKKGVSVGTFALMSNTFAGA-DRWEDTNKIRDEIRRM 443 (461)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 443 (461)
.++++.+..|.+......+...+.+. +.+++|.++|+++.+.
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999888888877777777777766 6788999999887553
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.71 E-value=1.5e-07 Score=70.35 Aligned_cols=97 Identities=6% Similarity=0.001 Sum_probs=86.9
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHh
Q 038303 348 MQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425 (461)
Q Consensus 348 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (461)
...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++..|.++.+|..++.+|.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 356677888999999999999999998 3344 56678888888999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHHcC
Q 038303 426 GADRWEDTNKIRDEIRRMG 444 (461)
Q Consensus 426 ~~g~~~~A~~~~~~m~~~g 444 (461)
..|++++|.+.|++..+..
T Consensus 93 ~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHC
Confidence 9999999999999998754
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.71 E-value=2.5e-07 Score=68.71 Aligned_cols=113 Identities=12% Similarity=0.090 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CC-CchhhHHHHHHHHH
Q 038303 313 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PI-EAEWSVWGALLNAC 390 (461)
Q Consensus 313 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~ 390 (461)
..+..+...+...|++++|...++++... .+.+...+..+...+.+.|++++|..+++++ .. +.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45555666666677777777777666651 2334556666666777777777777777666 22 22444566666667
Q ss_pred HhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhcc
Q 038303 391 RIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA 427 (461)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (461)
...|++++|...++++.+..|.++..+..+..++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 7777788888888777777777777777776666543
No 128
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.71 E-value=3.9e-08 Score=76.00 Aligned_cols=92 Identities=4% Similarity=-0.119 Sum_probs=43.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccC
Q 038303 351 YACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428 (461)
Q Consensus 351 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (461)
+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++.+..|.++.++..++.+|...|
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 103 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXG 103 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence 333444444445555555444444 1122 23334444444445555555555555555544555555555555555555
Q ss_pred ChhhHHHHHHHHHH
Q 038303 429 RWEDTNKIRDEIRR 442 (461)
Q Consensus 429 ~~~~A~~~~~~m~~ 442 (461)
++++|...+++..+
T Consensus 104 ~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 104 ELAEAESGLFLAQE 117 (148)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555554443
No 129
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.70 E-value=4e-06 Score=73.03 Aligned_cols=125 Identities=12% Similarity=0.048 Sum_probs=61.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCChh----hHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCc----chHHH
Q 038303 179 TMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEA----TLVNVLSACSSISALSFGKYVHSYISTRYDLSVS----NLVGN 250 (461)
Q Consensus 179 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 250 (461)
..+..+...|++++|..++++..+.....|+.. .+..+...+...++++.|...++.+.+...-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888888888888888876431222211 1222333444455556666655555541111111 11345
Q ss_pred HHHHHHHhcCCHHHHHHHHHHccC------CC----hhhHHHHHHHHHhcCChHHHHHHHHHH
Q 038303 251 AVINMYVKCGDVGIAIQVFNMLAY------KD----KISWSTVISGLAMNGCGRQALQLFSLM 303 (461)
Q Consensus 251 ~li~~~~~~g~~~~a~~~~~~~~~------~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m 303 (461)
.+...|...|++++|...|+++.+ .+ ..+|..+...|.+.|++++|...+++.
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 555555555555555555544431 01 123444444444555555555444443
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.70 E-value=2.3e-07 Score=69.90 Aligned_cols=114 Identities=9% Similarity=-0.026 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHH
Q 038303 313 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNAC 390 (461)
Q Consensus 313 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 390 (461)
..+..+...+...|++++|...|++..+ ..+.+...+..+...+...|++++|...+++. ...| +...+..+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4555556666666666666666666655 22234555666666666666666666666665 2222 344555566667
Q ss_pred HhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccC
Q 038303 391 RIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428 (461)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (461)
...|++++|...++++.+..|.+...+..+..++.+.|
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 77777777777777777766666667777666665544
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.70 E-value=2.1e-07 Score=69.76 Aligned_cols=117 Identities=5% Similarity=-0.120 Sum_probs=84.0
Q ss_pred HhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHH
Q 038303 312 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNA 389 (461)
Q Consensus 312 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 389 (461)
...+..+...+...|++++|...++..... .+.+...+..+...+...|++++|...+++. ...| +...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345556666677777777777777777652 2345566677777777777777777777776 2223 34566667777
Q ss_pred HHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCCh
Q 038303 390 CRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRW 430 (461)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 430 (461)
+...|++++|...++++.+..|.+...+..++.++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888877765
No 132
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.67 E-value=1.3e-07 Score=75.69 Aligned_cols=124 Identities=13% Similarity=0.109 Sum_probs=72.9
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHH-HhhcCCH--
Q 038303 288 AMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDM-YGRAGLL-- 364 (461)
Q Consensus 288 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 364 (461)
...|++++|...+++..+... .+...+..+...|...|++++|...|++..+. .+.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 455677777777777666432 24466666666777777777777777776652 12344555556666 5566666
Q ss_pred HHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCh
Q 038303 365 EEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414 (461)
Q Consensus 365 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 414 (461)
++|...++++ ...| +...+..+...+...|++++|...++++.+..|.+.
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 7777766665 2223 234455555566666777777777777666665554
No 133
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.67 E-value=2.9e-08 Score=81.12 Aligned_cols=97 Identities=7% Similarity=-0.119 Sum_probs=70.3
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhc
Q 038303 349 QHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAG 426 (461)
Q Consensus 349 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (461)
..+..+..+|.+.|++++|...+++. ...| +...+..+..++...|++++|+..|+++.+..|.+..++..+..++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56677788888888888888888877 3333 455677777889999999999999999999999999999999999999
Q ss_pred cCChhhHH-HHHHHHHHcCC
Q 038303 427 ADRWEDTN-KIRDEIRRMGL 445 (461)
Q Consensus 427 ~g~~~~A~-~~~~~m~~~g~ 445 (461)
.|+.+++. ..+..|...|.
T Consensus 169 ~~~~~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKGP 188 (198)
T ss_dssp HHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHhcccc
Confidence 99888887 66666655543
No 134
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.65 E-value=2.3e-07 Score=82.52 Aligned_cols=94 Identities=6% Similarity=-0.120 Sum_probs=76.1
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHh
Q 038303 348 MQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425 (461)
Q Consensus 348 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (461)
...|..+..+|.+.|++++|...+++. ...| +...+..+..++...|++++|+..|+++.+..|.+..++..+..++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 356777888888888888888888877 3333 55677778888899999999999999999999999999999999999
Q ss_pred ccCChhhH-HHHHHHHH
Q 038303 426 GADRWEDT-NKIRDEIR 441 (461)
Q Consensus 426 ~~g~~~~A-~~~~~~m~ 441 (461)
+.|++++| ...+++|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999888 44666654
No 135
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.65 E-value=2.9e-07 Score=66.92 Aligned_cols=100 Identities=10% Similarity=-0.018 Sum_probs=79.3
Q ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCC-chhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC--ChhHHHHHHH
Q 038303 347 QMQHYACVVDMYGRAGLLEEAEAFIREM-PIE-AEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV--SVGTFALMSN 422 (461)
Q Consensus 347 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~ 422 (461)
+...+..+...+.+.|++++|...+++. ... .+...+..+...+...|++++|...++++.+..|. +..++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3456666777778888888888888776 222 34556677777788889999999999999988888 8889999999
Q ss_pred HHhcc-CChhhHHHHHHHHHHcCCc
Q 038303 423 TFAGA-DRWEDTNKIRDEIRRMGLK 446 (461)
Q Consensus 423 ~~~~~-g~~~~A~~~~~~m~~~g~~ 446 (461)
++.+. |++++|.+.+++.......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccC
Confidence 99999 9999999999888776544
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.62 E-value=6.2e-07 Score=75.93 Aligned_cols=184 Identities=7% Similarity=-0.069 Sum_probs=115.6
Q ss_pred hcCCHHHHHHHHHHccC--C-ChhhHHHH-------HHHHHhcCChHHHHHHHHHHHhcCCCCCH---------------
Q 038303 258 KCGDVGIAIQVFNMLAY--K-DKISWSTV-------ISGLAMNGCGRQALQLFSLMIINAVFPDD--------------- 312 (461)
Q Consensus 258 ~~g~~~~a~~~~~~~~~--~-~~~~~~~l-------~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--------------- 312 (461)
..++...|.+.|.++.. | ....|..+ ...+.+.++..+++..+..-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 45777777777777663 2 33455555 3444444455555554444433 22211
Q ss_pred -------hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCch----hh
Q 038303 313 -------VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAE----WS 381 (461)
Q Consensus 313 -------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~ 381 (461)
.....+...+...|++++|.++|+.+.. + .|+......+...+.+.+++++|+..|+.....|+ ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--~-~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV--A-GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--T-TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c-CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1223345566777888888888877755 2 24332555556677788888888888877633332 22
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcC--CC-ChhHHHHHHHHHhccCChhhHHHHHHHHHHcCCc
Q 038303 382 VWGALLNACRIHRNDEMFDRIRQDLVNKK--GV-SVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446 (461)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 446 (461)
.+..+..++...|++++|+..|++...+. |. .+......+.++.+.|+.++|..+|+++......
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 45566666888888888888888887543 33 4457777888888888888888888888775443
No 137
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.58 E-value=4.1e-07 Score=67.96 Aligned_cols=93 Identities=10% Similarity=-0.091 Sum_probs=53.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccC
Q 038303 351 YACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428 (461)
Q Consensus 351 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (461)
+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++.+..|.++.+|..++.++...|
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 86 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence 444445555555555555555554 2222 33445555555666666666666666666666666666666666666666
Q ss_pred ChhhHHHHHHHHHHc
Q 038303 429 RWEDTNKIRDEIRRM 443 (461)
Q Consensus 429 ~~~~A~~~~~~m~~~ 443 (461)
++++|...+++..+.
T Consensus 87 ~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 87 EYASALETLDAARTK 101 (126)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 666666666665543
No 138
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.58 E-value=2.9e-07 Score=70.53 Aligned_cols=89 Identities=7% Similarity=-0.164 Sum_probs=40.9
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChh
Q 038303 354 VVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWE 431 (461)
Q Consensus 354 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 431 (461)
+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++.+..|.++..+..++.+|...|+++
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 103 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLD 103 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH
Confidence 334444444444444444444 1112 22333344444444455555555555555444444445555555555555555
Q ss_pred hHHHHHHHHHH
Q 038303 432 DTNKIRDEIRR 442 (461)
Q Consensus 432 ~A~~~~~~m~~ 442 (461)
+|.+.+++..+
T Consensus 104 ~A~~~~~~al~ 114 (142)
T 2xcb_A 104 GAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555544433
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.57 E-value=1.1e-06 Score=71.71 Aligned_cols=151 Identities=10% Similarity=-0.062 Sum_probs=70.1
Q ss_pred hcCCHHHHHH---HHHHccCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCC-CHhHHHHHHHHHHcCCChH
Q 038303 258 KCGDVGIAIQ---VFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIIN----AVFP-DDVTFIALISACSHGGLVD 329 (461)
Q Consensus 258 ~~g~~~~a~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~ 329 (461)
..|++++|.+ .+..-.......+..+...+...|++++|...+++..+. +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 332211123344555555566666666666666555431 1111 1234455555566666666
Q ss_pred HHHHHHHHhHhhcCCCC-----CcchHHHHHHHHhhcCCHHHHHHHHHhC------CCCch--hhHHHHHHHHHHhcCCh
Q 038303 330 QGLILFKAMSTVYEIVP-----QMQHYACVVDMYGRAGLLEEAEAFIREM------PIEAE--WSVWGALLNACRIHRND 396 (461)
Q Consensus 330 ~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~p~--~~~~~~l~~~~~~~~~~ 396 (461)
+|...+++......-.+ ....+..+...+...|++++|...+++. ...+. ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 66666655544211111 1233445555555566666666555544 00111 11233444445555566
Q ss_pred HHHHHHHHHHhh
Q 038303 397 EMFDRIRQDLVN 408 (461)
Q Consensus 397 ~~a~~~~~~~~~ 408 (461)
++|...+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 655555555544
No 140
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.56 E-value=2.1e-06 Score=67.44 Aligned_cols=127 Identities=9% Similarity=-0.133 Sum_probs=81.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHH
Q 038303 279 SWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMY 358 (461)
Q Consensus 279 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 358 (461)
.+..+...+...|++++|...+++..+... .+...+..+..++...|++++|...+++..+ ..+.+...+..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHH
Confidence 455566666777777777777777766432 2456666677777777777777777777766 2234556677777777
Q ss_pred hhcCCHHHHHHHHHhC-CCCc-hhhHH--HHHHHHHHhcCChHHHHHHHHHHhh
Q 038303 359 GRAGLLEEAEAFIREM-PIEA-EWSVW--GALLNACRIHRNDEMFDRIRQDLVN 408 (461)
Q Consensus 359 ~~~g~~~~A~~~~~~~-~~~p-~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~ 408 (461)
...|++++|...+++. ...| +...+ ......+...|++++|...++....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 7778888887777776 2222 22233 2233335667777888777776554
No 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.55 E-value=1.4e-06 Score=67.06 Aligned_cols=100 Identities=4% Similarity=-0.014 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHH
Q 038303 313 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNAC 390 (461)
Q Consensus 313 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 390 (461)
..+..+...+.+.|++++|+..|+.... --+.+...|..+..+|.+.|++++|...|++. ...| ++..|..+..++
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 4566666777788888888888888876 23345677777888888888888888888877 3333 345677777778
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCh
Q 038303 391 RIHRNDEMFDRIRQDLVNKKGVSV 414 (461)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~~~~~ 414 (461)
...|++++|+..|+++.+..|+++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888888888766543
No 142
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.53 E-value=2e-06 Score=62.99 Aligned_cols=108 Identities=10% Similarity=-0.033 Sum_probs=54.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHH
Q 038303 314 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACR 391 (461)
Q Consensus 314 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 391 (461)
.+..+...+...|++++|...|+.... ..+.+...+..+...+...|++++|...+++. ...| +...+..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 344444455555555555555555544 11223444455555555555555555555554 1122 2334444555555
Q ss_pred hcCChHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 038303 392 IHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423 (461)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 423 (461)
..|++++|...+++..+..|.++..+..+..+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 56666666666666655555555555444433
No 143
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.53 E-value=3.7e-07 Score=77.28 Aligned_cols=183 Identities=6% Similarity=-0.114 Sum_probs=124.3
Q ss_pred hhCCHHHHHHHHHHHHHhCCCccHHHHHHH-------HHHHHhcCCHHHHHHHHhhCCC--CCc----------------
Q 038303 22 LAHPHQKALEIHAHVIEYGHLHDIFIQNSL-------LHFYVTVKDIFSAHQIFNSVVF--PDV---------------- 76 (461)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~--~~~---------------- 76 (461)
..++...|.+.|..+.+..+. ....|..+ ..++.+.++..++...+..-.. |+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 679999999999999997754 45677766 4555555555566555554422 110
Q ss_pred ------eeHHHHHHHHHcCCChHHHHHHHhcC-CCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCC--hhHHH
Q 038303 77 ------VSWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN--IILDN 147 (461)
Q Consensus 77 ------~~~~~li~~~~~~~~~~~a~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~ 147 (461)
..+-.+...+...|++++|.++|+.+ ...|+......+...+.+.+++++|+..|+...+.. .|. ...+.
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~ 175 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGV 175 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHH
Confidence 11233556777889999999999988 555654455555556778888888888887443321 111 23566
Q ss_pred HHHHHHHHcCChhhHHHHHhcCCC-C-----chhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 038303 148 AILDFYIRCGSLASCGYLFVKMPK-R-----NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPN 209 (461)
Q Consensus 148 ~l~~~~~~~g~~~~a~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 209 (461)
.+..++...|++++|+..|++... + ..........++.+.|+.++|..+|+++.. ..|+
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a---~~P~ 240 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT---THPE 240 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCc
Confidence 677888888888888888887743 2 223556667778888888888888888887 4455
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.52 E-value=8.6e-07 Score=72.41 Aligned_cols=47 Identities=17% Similarity=0.072 Sum_probs=22.6
Q ss_pred cCChhhHHH---HHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038303 156 CGSLASCGY---LFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202 (461)
Q Consensus 156 ~g~~~~a~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 202 (461)
.|++++|.+ .+..-+.....++..+...+...|++++|...+++..+
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 54 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQ 54 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 344555554 33332222344555555555566666666665555544
No 145
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.51 E-value=5.6e-07 Score=66.64 Aligned_cols=96 Identities=8% Similarity=-0.091 Sum_probs=81.6
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhc
Q 038303 349 QHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAG 426 (461)
Q Consensus 349 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (461)
..+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++.+..|.++.++..++.+|.+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34556777888999999999999988 4344 556777777789999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHHHHcC
Q 038303 427 ADRWEDTNKIRDEIRRMG 444 (461)
Q Consensus 427 ~g~~~~A~~~~~~m~~~g 444 (461)
.|++++|...+++..+..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 999999999999987643
No 146
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.51 E-value=1.2e-06 Score=66.42 Aligned_cols=95 Identities=8% Similarity=-0.085 Sum_probs=50.2
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHh
Q 038303 348 MQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425 (461)
Q Consensus 348 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (461)
...+..+...+...|++++|...|++. ...| +...+..+...+...|+++.|...++++.+..|.++.++..++.+|.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 344444555555555555555555544 1122 23344444445555555555555555555555555555555555555
Q ss_pred ccCChhhHHHHHHHHHH
Q 038303 426 GADRWEDTNKIRDEIRR 442 (461)
Q Consensus 426 ~~g~~~~A~~~~~~m~~ 442 (461)
..|++++|...+++..+
T Consensus 89 ~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 89 EMESYDEAIANLQRAYS 105 (137)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 56666666555555544
No 147
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.51 E-value=1.1e-06 Score=65.10 Aligned_cols=98 Identities=10% Similarity=0.141 Sum_probs=86.6
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhC-CCC-chhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHh
Q 038303 348 MQHYACVVDMYGRAGLLEEAEAFIREM-PIE-AEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425 (461)
Q Consensus 348 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (461)
...+..+...+...|++++|.+.++++ ... .+...+..+...+...|++++|...++++.+..|.++.++..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 467788889999999999999999988 223 355677888888999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHHcCC
Q 038303 426 GADRWEDTNKIRDEIRRMGL 445 (461)
Q Consensus 426 ~~g~~~~A~~~~~~m~~~g~ 445 (461)
..|++++|...++++.+...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999987643
No 148
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.50 E-value=4.6e-07 Score=78.42 Aligned_cols=93 Identities=10% Similarity=-0.067 Sum_probs=61.8
Q ss_pred CcchHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCceeHHHHHHH
Q 038303 9 NHYTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVF---PDVVSWTTIISG 85 (461)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~ 85 (461)
+...+..+...+...|++++|...|+...+.... +...|..+..+|.+.|++++|...+++... .+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3455666667777777777777777777776432 566666677777777777777777776633 234455666666
Q ss_pred HHcCCChHHHHHHHhcC
Q 038303 86 LSKCGFHKEAIDMFCGI 102 (461)
Q Consensus 86 ~~~~~~~~~a~~~~~~m 102 (461)
+...|++++|+..|++.
T Consensus 82 ~~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRA 98 (281)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 66667777776666654
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.50 E-value=1.3e-06 Score=65.71 Aligned_cols=100 Identities=3% Similarity=-0.050 Sum_probs=88.6
Q ss_pred CCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHH
Q 038303 345 VPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSN 422 (461)
Q Consensus 345 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 422 (461)
+.+...+..+...+.+.|++++|...+++. ...| +...+..+...+...|++++|+..++++.+..|.+..++..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 344677888899999999999999999998 4444 56677888888999999999999999999999999999999999
Q ss_pred HHhccCChhhHHHHHHHHHHcC
Q 038303 423 TFAGADRWEDTNKIRDEIRRMG 444 (461)
Q Consensus 423 ~~~~~g~~~~A~~~~~~m~~~g 444 (461)
++.+.|++++|.+.+++..+..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999998764
No 150
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.50 E-value=0.00012 Score=64.24 Aligned_cols=173 Identities=10% Similarity=-0.026 Sum_probs=98.0
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCh-hhHHHHHHHhhccc-hhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhc-
Q 038303 183 GYAERGFCKEAVSVFQEMEKTKEAEPNE-ATLVNVLSACSSIS-ALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKC- 259 (461)
Q Consensus 183 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 259 (461)
...+.+..++|+++++++.. ..|+. ..++.--..+...+ .++++...++.+.. ..+-+..+|+.-...+.+.
T Consensus 63 ~~~~~e~se~AL~lt~~~L~---~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~--~nPKny~aW~hR~wlL~~l~ 137 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVR---MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV--QNLKSYQVWHHRLLLLDRIS 137 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHHC
T ss_pred HHHhCCCCHHHHHHHHHHHH---hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhc
Confidence 33444455667777777776 33433 33444444444444 36666666666655 3333444555555555554
Q ss_pred C-CHHHHHHHHHHccCC---ChhhHHHHHHHHHhcCChH--------HHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCC
Q 038303 260 G-DVGIAIQVFNMLAYK---DKISWSTVISGLAMNGCGR--------QALQLFSLMIINAVFPDDVTFIALISACSHGGL 327 (461)
Q Consensus 260 g-~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 327 (461)
+ +.++++++++.+.+. |...|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.....+.+.+.
T Consensus 138 ~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 138 PQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp CSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTT
T ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccc
Confidence 5 677777888777754 3444544444444444444 777777777776443 66677766666666665
Q ss_pred -------hHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCC
Q 038303 328 -------VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363 (461)
Q Consensus 328 -------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 363 (461)
++++++.++++.. -.+-|...|+-+-..+.+.|+
T Consensus 217 ~~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred cccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCC
Confidence 5667777666665 233445555555555555444
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.49 E-value=8.7e-07 Score=69.72 Aligned_cols=109 Identities=9% Similarity=-0.038 Sum_probs=88.5
Q ss_pred CHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHH
Q 038303 311 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLN 388 (461)
Q Consensus 311 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 388 (461)
+...+..+...+...|++++|+..|++..+ -.+.+...|..+..+|.+.|++++|...+++. ...| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 446777888889999999999999999887 23446778888999999999999999999988 3334 4667778888
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCChhHHHHHH
Q 038303 389 ACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421 (461)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 421 (461)
++...|++++|+..|+++.+..|.+...+....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 899999999999999999998888877554443
No 152
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.49 E-value=8.2e-07 Score=70.86 Aligned_cols=117 Identities=6% Similarity=0.051 Sum_probs=53.1
Q ss_pred CCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHH-HHhcCCh--HHH
Q 038303 325 GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNA-CRIHRND--EMF 399 (461)
Q Consensus 325 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~~~~--~~a 399 (461)
.|++++|...++.... ..+.+...+..+...|...|++++|...|++. ...| +...+..+... +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 4445555555544443 11223344444555555555555555555544 1111 22233333444 3444554 555
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 038303 400 DRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 443 (461)
...++++.+..|.+..++..++.+|...|++++|...+++..+.
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 55555555555555555555555555555555555555555443
No 153
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.48 E-value=3.5e-07 Score=70.57 Aligned_cols=102 Identities=7% Similarity=-0.162 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHH
Q 038303 313 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNAC 390 (461)
Q Consensus 313 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 390 (461)
..+..+...+...|++++|+..|+.... .-+.+...|..+..+|...|++++|...|++. ...| +...+..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3445555566666777777777766655 22334556666666677777777777777666 2223 334555566667
Q ss_pred HhcCChHHHHHHHHHHhhcCCCChhH
Q 038303 391 RIHRNDEMFDRIRQDLVNKKGVSVGT 416 (461)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~~~~~~~ 416 (461)
...|++++|+..|+++.+..|.++..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 77777777777777777666555433
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.47 E-value=1.5e-06 Score=63.71 Aligned_cols=98 Identities=9% Similarity=0.012 Sum_probs=86.0
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHh
Q 038303 348 MQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425 (461)
Q Consensus 348 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (461)
...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+..|.++..+..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456777888999999999999999998 3333 56677778888999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHHcCC
Q 038303 426 GADRWEDTNKIRDEIRRMGL 445 (461)
Q Consensus 426 ~~g~~~~A~~~~~~m~~~g~ 445 (461)
..|++++|.+.+++..+.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCT
T ss_pred HHhhHHHHHHHHHHHHHcCC
Confidence 99999999999999887543
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=2.4e-06 Score=65.61 Aligned_cols=110 Identities=7% Similarity=-0.185 Sum_probs=58.8
Q ss_pred HhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHH
Q 038303 312 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ----MQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGA 385 (461)
Q Consensus 312 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 385 (461)
...+..+...+...|++++|...|++..+ ..|+ ...+..+..+|...|++++|...+++. ...| +...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 34455555556666666666666666554 2233 445555555555666666666655554 2222 3334444
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038303 386 LLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424 (461)
Q Consensus 386 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (461)
+..++...|++++|...+++..+..|.+..++..+....
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 555555556666666666666555555555555444443
No 156
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.44 E-value=9.6e-06 Score=74.98 Aligned_cols=163 Identities=6% Similarity=-0.125 Sum_probs=97.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCCHh----HHHHHHHHHHcCCChHHHHHHHHHhHhhc---CCCC-Ccch
Q 038303 280 WSTVISGLAMNGCGRQALQLFSLMIINA-VFPDDV----TFIALISACSHGGLVDQGLILFKAMSTVY---EIVP-QMQH 350 (461)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~ 350 (461)
+..+...|...|++++|.+.+..+...- ..++.. ..+.+-..+...|+++.|..+++...... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5566777777777777777777665421 111111 11222223334677777777776654311 1111 2345
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-------CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhc---CCCC----hh
Q 038303 351 YACVVDMYGRAGLLEEAEAFIREM-------PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNK---KGVS----VG 415 (461)
Q Consensus 351 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~ 415 (461)
+..+...|...|++++|..++++. ..++ ....+..++..|...|+++.|..++++.... .+.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 666777778888888888777765 1112 2335666667788888888888888777652 1221 34
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHH
Q 038303 416 TFALMSNTFAGADRWEDTNKIRDEIRR 442 (461)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 442 (461)
.+..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 566777777788888888777766643
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.44 E-value=2.4e-06 Score=63.67 Aligned_cols=108 Identities=7% Similarity=-0.132 Sum_probs=60.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHH
Q 038303 314 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACR 391 (461)
Q Consensus 314 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 391 (461)
.+..+...+.+.|++++|+..|++..+ -.+.+...|..+..+|.+.|++++|...+++. ...| +...+..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 344444555556666666666655554 12234455555666666666666666666655 2222 3345555555566
Q ss_pred hcCChHHHHHHHHHHhhcC------CCChhHHHHHHHH
Q 038303 392 IHRNDEMFDRIRQDLVNKK------GVSVGTFALMSNT 423 (461)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~ 423 (461)
..|++++|+..++++.+.. |.+..+...+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 6666666666666666655 5555555554443
No 158
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.43 E-value=3.8e-05 Score=67.31 Aligned_cols=213 Identities=10% Similarity=0.020 Sum_probs=148.4
Q ss_pred hhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcC-CHHHHHHHHHHccCC---ChhhHHHHHHHHHhc-C-ChHHHHHH
Q 038303 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCG-DVGIAIQVFNMLAYK---DKISWSTVISGLAMN-G-CGRQALQL 299 (461)
Q Consensus 226 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~-~-~~~~a~~~ 299 (461)
.++|..+++.+.. -.+-+..+++.--..+...| .+++++++++.+... +..+|+.-...+.+. + ++++++++
T Consensus 70 se~AL~lt~~~L~--~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 70 SERALELTEIIVR--MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp SHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 4567777777766 22333445666666667778 599999999998854 556677766666665 6 88999999
Q ss_pred HHHHHhcCCCCCHhHHHHHHHHHHcCCChH--------HHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCC-------H
Q 038303 300 FSLMIINAVFPDDVTFIALISACSHGGLVD--------QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL-------L 364 (461)
Q Consensus 300 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~ 364 (461)
++++.+...+ +..+++.-...+.+.|.++ ++++.++++.+ ..+-|...|+.....+.+.++ +
T Consensus 148 ~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~dp~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 148 IHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VDGRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccccchHHH
Confidence 9999986443 6677766655555555555 89999999987 334567778777777777776 6
Q ss_pred HHHHHHHHhC-CCC-chhhHHHHHHHHHHhcCCh--------------------HHHHHHHHHHhhcC------CCChhH
Q 038303 365 EEAEAFIREM-PIE-AEWSVWGALLNACRIHRND--------------------EMFDRIRQDLVNKK------GVSVGT 416 (461)
Q Consensus 365 ~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~------~~~~~~ 416 (461)
+++++.++++ ... -|...|+-+-..+.+.|.. .........+.... +.++.+
T Consensus 225 ~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a 304 (349)
T 3q7a_A 225 QDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA 304 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHH
Confidence 8888888877 333 4666777766666665553 33444444444332 577889
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHc
Q 038303 417 FALMSNTFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 417 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 443 (461)
...++..|...|+.++|.++++.+.++
T Consensus 305 l~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 305 LEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999998543
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.42 E-value=1e-06 Score=65.86 Aligned_cols=89 Identities=6% Similarity=-0.019 Sum_probs=39.6
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC-------hhHHHHHHHHH
Q 038303 354 VVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVS-------VGTFALMSNTF 424 (461)
Q Consensus 354 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~ 424 (461)
+...+.+.|++++|+..|++. .+.| +...|..+..+|...|++++|+..++++++..|.+ ..+|..++.++
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~ 93 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAF 93 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 344444444444444444443 2122 22233444444444444444444444444432222 12444455555
Q ss_pred hccCChhhHHHHHHHHHH
Q 038303 425 AGADRWEDTNKIRDEIRR 442 (461)
Q Consensus 425 ~~~g~~~~A~~~~~~m~~ 442 (461)
...|++++|++.+++...
T Consensus 94 ~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 94 QKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHh
Confidence 555555555555555444
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=7.8e-06 Score=62.65 Aligned_cols=96 Identities=9% Similarity=-0.014 Sum_probs=48.1
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCch----hhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHH
Q 038303 348 MQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE----WSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSN 422 (461)
Q Consensus 348 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 422 (461)
...+..+...+...|++++|...|++. ...|+ ...+..+...+...|++++|+..+++..+..|.+...+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 334444445555555555555555544 33333 3344444444555555555555555555555555555555555
Q ss_pred HHhccCChhhHHHHHHHHHHc
Q 038303 423 TFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 423 ~~~~~g~~~~A~~~~~~m~~~ 443 (461)
++...|++++|...+++..+.
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHc
Confidence 555555555555555555443
No 161
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.40 E-value=1.9e-06 Score=65.88 Aligned_cols=100 Identities=11% Similarity=-0.103 Sum_probs=53.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHh
Q 038303 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRI 392 (461)
Q Consensus 315 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 392 (461)
+..+...+...|++++|...|+.... .-+.+...|..+..+|.+.|++++|...|++. ...| +...+..+..++..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 33344445555666666666655554 12234455555555566666666666666555 2222 23344445555666
Q ss_pred cCChHHHHHHHHHHhhcCCCChhH
Q 038303 393 HRNDEMFDRIRQDLVNKKGVSVGT 416 (461)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~~~~~~~ 416 (461)
.|++++|+..++++.+..|.++..
T Consensus 99 ~g~~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 99 LGDLDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred cCCHHHHHHHHHHHHHhCCCCcch
Confidence 666666666666666655544433
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.40 E-value=7.7e-06 Score=64.17 Aligned_cols=96 Identities=8% Similarity=-0.062 Sum_probs=75.7
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHH
Q 038303 276 DKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVV 355 (461)
Q Consensus 276 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 355 (461)
+...|..+...+.+.|++++|+..|++..+... -+...+..+..+|...|++++|+..|++..+. .+.+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 345677778888888899999988888887532 25677788888888889999998888888772 234577788888
Q ss_pred HHHhhcCCHHHHHHHHHhC
Q 038303 356 DMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~~ 374 (461)
.+|.+.|++++|...|++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHH
Confidence 8888889999988888877
No 163
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.40 E-value=1.9e-06 Score=64.36 Aligned_cols=99 Identities=6% Similarity=-0.044 Sum_probs=87.1
Q ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038303 347 QMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424 (461)
Q Consensus 347 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (461)
+...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+..|.++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567778888999999999999999988 3333 5667778888899999999999999999999999999999999999
Q ss_pred hccCChhhHHHHHHHHHHcCC
Q 038303 425 AGADRWEDTNKIRDEIRRMGL 445 (461)
Q Consensus 425 ~~~g~~~~A~~~~~~m~~~g~ 445 (461)
.+.|++++|...+++..+...
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST
T ss_pred HHhCCHHHHHHHHHHHHhcCc
Confidence 999999999999999987643
No 164
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.39 E-value=2.3e-06 Score=64.04 Aligned_cols=97 Identities=12% Similarity=-0.010 Sum_probs=50.7
Q ss_pred HHHHHHcCCChHHHHHHHHHhHhhcCCCCCc---chHHHHHHHHhhcCCHHHHHHHHHhC-CCCch----hhHHHHHHHH
Q 038303 318 LISACSHGGLVDQGLILFKAMSTVYEIVPQM---QHYACVVDMYGRAGLLEEAEAFIREM-PIEAE----WSVWGALLNA 389 (461)
Q Consensus 318 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~ 389 (461)
+...+...|++++|...|+.+.+. .+.+. ..+..+..++.+.|++++|...+++. ...|+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 344555566666666666665551 11122 34455555566666666666666555 22222 2334444455
Q ss_pred HHhcCChHHHHHHHHHHhhcCCCChhH
Q 038303 390 CRIHRNDEMFDRIRQDLVNKKGVSVGT 416 (461)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~~~~~~~ 416 (461)
+...|++++|...++++.+..|.++..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 556666666666666666555555443
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.35 E-value=2.9e-06 Score=63.38 Aligned_cols=108 Identities=7% Similarity=-0.027 Sum_probs=56.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCch--------hhHHH
Q 038303 314 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE--------WSVWG 384 (461)
Q Consensus 314 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--------~~~~~ 384 (461)
.+..+...+...|++++|...|+.... ..+.+...+..+...+...|++++|...+++. ...|+ ...+.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 344444455555555555555555544 12233444555555555555555555555554 11111 33455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038303 385 ALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424 (461)
Q Consensus 385 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (461)
.+...+...|++++|...++++.+..| ++.....+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 555556666666666666666666544 454444444443
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.34 E-value=4.1e-06 Score=63.38 Aligned_cols=98 Identities=10% Similarity=-0.147 Sum_probs=47.6
Q ss_pred HhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHH
Q 038303 312 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNA 389 (461)
Q Consensus 312 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 389 (461)
...+..+...+...|++++|...|+.... -.+.+...+..+..++...|++++|...+++. ...| +...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34444444455555555555555555444 11223444455555555555555555555544 2122 23344445555
Q ss_pred HHhcCChHHHHHHHHHHhhcCC
Q 038303 390 CRIHRNDEMFDRIRQDLVNKKG 411 (461)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~~ 411 (461)
+...|++++|+..++++.+..|
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHCh
Confidence 5555555555555555555433
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=1.3e-05 Score=74.17 Aligned_cols=96 Identities=7% Similarity=-0.129 Sum_probs=45.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCC----CCC-HhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCC-----c
Q 038303 279 SWSTVISGLAMNGCGRQALQLFSLMIINAV----FPD-DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ-----M 348 (461)
Q Consensus 279 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~----~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~ 348 (461)
++..+...+...|++++|..++++....-. .|. ...+..++..|...|++++|..+++.......-.++ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 344455555555555555555555433211 111 134555555566666666666665554431111111 1
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHhC
Q 038303 349 QHYACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 349 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
..+..+...+...|++++|...|.+.
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 23344444555556666655554433
No 168
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.32 E-value=3e-06 Score=64.70 Aligned_cols=62 Identities=10% Similarity=-0.049 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhc-------CCCChhHH----HHHHHHHhccCChhhHHHHHHHHHHc
Q 038303 382 VWGALLNACRIHRNDEMFDRIRQDLVNK-------KGVSVGTF----ALMSNTFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 443 (461)
.|..+..++.+.|++++|+..+++.++. .|.+...| ...+.++...|++++|+..|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6777777788888888888888888888 89898899 99999999999999999999988663
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.31 E-value=2.5e-06 Score=63.74 Aligned_cols=98 Identities=4% Similarity=-0.018 Sum_probs=83.8
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhC-CC-CchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC-------hhHHH
Q 038303 348 MQHYACVVDMYGRAGLLEEAEAFIREM-PI-EAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVS-------VGTFA 418 (461)
Q Consensus 348 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~ 418 (461)
...+..+...+...|++++|...+++. .. +.+...+..+...+...|++++|...++++.+..|.+ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 346677888999999999999999988 22 3355677778888999999999999999999876655 88999
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHcCC
Q 038303 419 LMSNTFAGADRWEDTNKIRDEIRRMGL 445 (461)
Q Consensus 419 ~l~~~~~~~g~~~~A~~~~~~m~~~g~ 445 (461)
.++.++.+.|++++|.+.+++..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 999999999999999999999988653
No 170
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.31 E-value=4.6e-06 Score=62.25 Aligned_cols=99 Identities=12% Similarity=0.053 Sum_probs=61.0
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCC--Cc--------hhHHHHH
Q 038303 111 LVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK--RN--------VVSWTTM 180 (461)
Q Consensus 111 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~--------~~~~~~l 180 (461)
+..+...+.+.|++++|.+.|++.++..+. +...|+.+..+|.+.|++++|+..+++..+ |+ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 444555556666666666666666655433 455666666666666666666666665543 11 1256666
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCChhhH
Q 038303 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATL 213 (461)
Q Consensus 181 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 213 (461)
..++...|++++|++.|++... ..||..+.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~---~~~~~~~~ 119 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS---EFRDPELV 119 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---HSCCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh---hCcCHHHH
Confidence 7777778888888888888776 44554443
No 171
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.31 E-value=5.6e-06 Score=64.46 Aligned_cols=129 Identities=12% Similarity=0.026 Sum_probs=74.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHhhcCCHHHHHHHHHhC-------CCCc-hhhH
Q 038303 315 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQ----MQHYACVVDMYGRAGLLEEAEAFIREM-------PIEA-EWSV 382 (461)
Q Consensus 315 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~ 382 (461)
+..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.+++. +..+ ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444444555555555555444331100011 124455555566666666666666554 1111 1234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcC------CCChhHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 038303 383 WGALLNACRIHRNDEMFDRIRQDLVNKK------GVSVGTFALMSNTFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 443 (461)
+..+...+...|++++|...+++..+.. +....++..++..+...|++++|.+.+++..+.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5555566777788888887777776521 122457788888888999999999988887653
No 172
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.31 E-value=0.00024 Score=61.97 Aligned_cols=92 Identities=5% Similarity=-0.125 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcC--CHHHHHHHHHHccC---CChhhHHHHHHHHHhcCC-hHHHHHHH
Q 038303 227 SFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCG--DVGIAIQVFNMLAY---KDKISWSTVISGLAMNGC-GRQALQLF 300 (461)
Q Consensus 227 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~ 300 (461)
+.+..+++.+.. ..+-+..+|+.-...+.+.+ .++++..+++.+.+ .|...|+.-.-.+...|. ++++++.+
T Consensus 91 ~~EL~~~~~~L~--~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLR--VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 344444444443 22233344444444444444 35666666666553 244455555555555555 46666666
Q ss_pred HHHHhcCCCCCHhHHHHHHHH
Q 038303 301 SLMIINAVFPDDVTFIALISA 321 (461)
Q Consensus 301 ~~m~~~g~~p~~~~~~~ll~~ 321 (461)
+++.+..+. |...|+.....
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~l 188 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCL 188 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHCCC-CHHHHHHHHHH
Confidence 666665433 44555444433
No 173
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.30 E-value=1.4e-06 Score=64.02 Aligned_cols=61 Identities=10% Similarity=0.002 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHH
Q 038303 382 VWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442 (461)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 442 (461)
.+..+...+...|++++|+..++++.+..|.++.++..++.++.+.|++++|...+++..+
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555555555555555555555555555554443
No 174
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.30 E-value=1e-05 Score=71.94 Aligned_cols=128 Identities=8% Similarity=-0.080 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--------------HhHHHHHHHHHHcCCChHHHHHHHHHhHhhcC
Q 038303 278 ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD--------------DVTFIALISACSHGGLVDQGLILFKAMSTVYE 343 (461)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 343 (461)
..|..+...+.+.|++++|+..|++..+...... ...|..+..+|.+.|++++|+..+++..+ -
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~ 225 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE--L 225 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h
Confidence 3444555555555666666666665555322111 35666666666677777777777766665 1
Q ss_pred CCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHH-HHHHHHHh
Q 038303 344 IVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMF-DRIRQDLV 407 (461)
Q Consensus 344 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 407 (461)
.+.+...+..+..+|...|++++|...|++. ...| +...+..+...+...|+.+++ ...++.+.
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334566666666777777777777777666 2233 334555555556666666666 33444443
No 175
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.30 E-value=6.2e-06 Score=59.59 Aligned_cols=97 Identities=11% Similarity=-0.013 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc---hhhHHHHHHHH
Q 038303 314 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA---EWSVWGALLNA 389 (461)
Q Consensus 314 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~ 389 (461)
.+..+...+...|++++|...+++..+ ..+.+...+..+...+...|++++|...+++. ...| +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQ--LDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 334444445555555555555555544 11223444445555555555555555555554 2222 23444555555
Q ss_pred HHhc-CChHHHHHHHHHHhhcCCC
Q 038303 390 CRIH-RNDEMFDRIRQDLVNKKGV 412 (461)
Q Consensus 390 ~~~~-~~~~~a~~~~~~~~~~~~~ 412 (461)
+... |++++|.+.++++....|+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccC
Confidence 5555 6666666666666555444
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.30 E-value=6.1e-06 Score=76.72 Aligned_cols=94 Identities=7% Similarity=-0.045 Sum_probs=66.6
Q ss_pred cchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHh
Q 038303 348 MQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFA 425 (461)
Q Consensus 348 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (461)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..+|...|++++|+..|+++++..|.+..++..+..++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 356677777888888888888888777 2223 45567777777888888888888888888888888888888888888
Q ss_pred ccCChhhHHH-HHHHHH
Q 038303 426 GADRWEDTNK-IRDEIR 441 (461)
Q Consensus 426 ~~g~~~~A~~-~~~~m~ 441 (461)
+.|++++|.+ .+++|.
T Consensus 397 ~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 8888877653 444443
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.27 E-value=2.1e-06 Score=80.21 Aligned_cols=116 Identities=7% Similarity=-0.093 Sum_probs=74.9
Q ss_pred HHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHH
Q 038303 321 ACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEM 398 (461)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 398 (461)
.+.+.|++++|++.|++..+. .+.+...|..+..+|.+.|++++|.+.+++. ...| +...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 344566677777776666651 2334566666677777777777777777666 3333 34456666666777788888
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHH--HhccCChhhHHHHHH
Q 038303 399 FDRIRQDLVNKKGVSVGTFALMSNT--FAGADRWEDTNKIRD 438 (461)
Q Consensus 399 a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 438 (461)
|+..++++.+..|.+..++..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888777777777777777766 777788888887776
No 178
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.27 E-value=2.5e-06 Score=69.42 Aligned_cols=168 Identities=8% Similarity=-0.118 Sum_probs=89.8
Q ss_pred HHHHHHHcCChhhHHHHHhcCCC---CchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccch
Q 038303 149 ILDFYIRCGSLASCGYLFVKMPK---RNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 225 (461)
Q Consensus 149 l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~ 225 (461)
.+......|+++++.+.++...+ .....+..+...+...|++++|...|++..+. .|+...+... .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~--------~ 78 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF---FIHTEEWDDQ--------I 78 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TTTCTTCCCH--------H
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---Hhcccccchh--------h
Confidence 34445556677777776665443 24456777888899999999999999998874 2221110000 0
Q ss_pred hhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccC---CChhhHHHHHHHHHhcCChHHHHHHHHH
Q 038303 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY---KDKISWSTVISGLAMNGCGRQALQLFSL 302 (461)
Q Consensus 226 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 302 (461)
...- .. .....++..+..+|.+.|++++|...++...+ .+...+..+..++...|++++|...|++
T Consensus 79 ~~~~---~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 79 LLDK---KK--------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHH---HH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHH---HH--------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 0000 00 00123455666777777777777777766552 3556677777777778888888888877
Q ss_pred HHhcCCCCCHhHHHHHHHHHHcCCChHHHH-HHHHHhH
Q 038303 303 MIINAVFPDDVTFIALISACSHGGLVDQGL-ILFKAMS 339 (461)
Q Consensus 303 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~ 339 (461)
..+... -+...+..+..++...++.+++. ..+..+.
T Consensus 148 al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 148 AASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHST-TCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 776422 13455666666666666666555 4444443
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.23 E-value=6.2e-06 Score=64.58 Aligned_cols=102 Identities=13% Similarity=-0.025 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHhHhhcC----------------CCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 038303 313 VTFIALISACSHGGLVDQGLILFKAMSTVYE----------------IVPQMQHYACVVDMYGRAGLLEEAEAFIREM-P 375 (461)
Q Consensus 313 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 375 (461)
..+......+.+.|++++|+..|........ .+.+...|..+..+|.+.|++++|...+++. .
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 4556666667777777777777777665100 0111234444555555555555555555544 2
Q ss_pred CCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCh
Q 038303 376 IEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSV 414 (461)
Q Consensus 376 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 414 (461)
..| +...|..+..++...|++++|...++++.+..|.+.
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 222 233444444445555555555555555555555444
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.22 E-value=2.2e-05 Score=58.52 Aligned_cols=88 Identities=13% Similarity=-0.066 Sum_probs=38.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCH---hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCC---cchHHHHHHH
Q 038303 284 ISGLAMNGCGRQALQLFSLMIINAVFPDD---VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ---MQHYACVVDM 357 (461)
Q Consensus 284 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~ 357 (461)
...+...|++++|...|++..+.... +. ..+..+..++...|++++|...|+.+... .+.+ ...+..+..+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHH
Confidence 34444455555555555554443211 11 23444444444555555555555544441 1111 2334444444
Q ss_pred HhhcCCHHHHHHHHHhC
Q 038303 358 YGRAGLLEEAEAFIREM 374 (461)
Q Consensus 358 ~~~~g~~~~A~~~~~~~ 374 (461)
+.+.|++++|...|+++
T Consensus 86 ~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 55555555555555444
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.20 E-value=1e-05 Score=75.54 Aligned_cols=118 Identities=14% Similarity=-0.003 Sum_probs=81.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHccC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCCh
Q 038303 252 VINMYVKCGDVGIAIQVFNMLAY---KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328 (461)
Q Consensus 252 li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 328 (461)
+...+.+.|++++|.+.|++..+ .+...|..+..++.+.|++++|++.+++..+... .+...+..+..+|...|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 34456677888888888887652 3567788888888888888888888888887532 2456777788888888888
Q ss_pred HHHHHHHHHhHhhcCCCCCcchHHHHHHH--HhhcCCHHHHHHHHH
Q 038303 329 DQGLILFKAMSTVYEIVPQMQHYACVVDM--YGRAGLLEEAEAFIR 372 (461)
Q Consensus 329 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 372 (461)
++|.+.|++..+. .+.+...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888762 22234455555555 777788888888887
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.20 E-value=1.3e-05 Score=62.32 Aligned_cols=129 Identities=14% Similarity=0.031 Sum_probs=67.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CC----HhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCC----cch
Q 038303 280 WSTVISGLAMNGCGRQALQLFSLMIINAVF-PD----DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ----MQH 350 (461)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 350 (461)
+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++......-.++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444455555555555555554432100 01 124455555566666666666666655431111111 334
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-------CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 038303 351 YACVVDMYGRAGLLEEAEAFIREM-------PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVN 408 (461)
Q Consensus 351 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 408 (461)
+..+...+...|++++|...+++. +..+ ....+..+...+...|++++|...+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555666666677777776666655 1111 122455556667777888888888777765
No 183
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.17 E-value=4.9e-06 Score=74.01 Aligned_cols=149 Identities=8% Similarity=-0.120 Sum_probs=76.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 038303 277 KISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356 (461)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 356 (461)
...+..+...+.+.|++++|...|++..+. .|+... +...++.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 345666777777888888888888887763 344331 22233333332221 1 126677888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHH-hccCChhhH
Q 038303 357 MYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF-AGADRWEDT 433 (461)
Q Consensus 357 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A 433 (461)
+|.+.|++++|...+++. ...| +...+..+..+|...|++++|+..|+++.+..|.+..++..+.... ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888877 3333 5567777888888889999999999998888888888888887774 345667778
Q ss_pred HHHHHHHHHcCC
Q 038303 434 NKIRDEIRRMGL 445 (461)
Q Consensus 434 ~~~~~~m~~~g~ 445 (461)
...+.+|.....
T Consensus 319 ~~~~~~~l~~~p 330 (338)
T 2if4_A 319 KEMYKGIFKGKD 330 (338)
T ss_dssp ------------
T ss_pred HHHHHHhhCCCC
Confidence 888888866543
No 184
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.16 E-value=0.00066 Score=59.20 Aligned_cols=179 Identities=7% Similarity=-0.057 Sum_probs=129.2
Q ss_pred HHHHHHHHHHccC---CChhhHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCC-hHHHHHHH
Q 038303 262 VGIAIQVFNMLAY---KDKISWSTVISGLAMNG--CGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL-VDQGLILF 335 (461)
Q Consensus 262 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~ 335 (461)
+++++.+++.+.. .+..+|+.-...+.+.+ .+++++++++++.+...+ |...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677778877763 36677777777777777 489999999999987544 67788777777777888 58999999
Q ss_pred HHhHhhcCCCCCcchHHHHHHHHhhc--------------CCHHHHHHHHHhC-CC-CchhhHHHHHHHHHHhc------
Q 038303 336 KAMSTVYEIVPQMQHYACVVDMYGRA--------------GLLEEAEAFIREM-PI-EAEWSVWGALLNACRIH------ 393 (461)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~------ 393 (461)
+.+.+ ..+-|...|+.....+.+. +.++++++.+.+. .. +-|...|+-+-..+...
T Consensus 169 ~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHH--HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHH--HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 99988 3345666676665555544 4578888888887 33 34556666555554444
Q ss_pred -----CChHHHHHHHHHHhhcCCCChhHHHHHHH---HHhccCChhhHHHHHHHHHHc
Q 038303 394 -----RNDEMFDRIRQDLVNKKGVSVGTFALMSN---TFAGADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 394 -----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~m~~~ 443 (461)
+.++++++.++++.+..|.+.-++..++. .....|..+++...++++.+-
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 46889999999999999988655444433 223567888999999998764
No 185
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.14 E-value=8.4e-06 Score=75.71 Aligned_cols=126 Identities=11% Similarity=0.009 Sum_probs=94.2
Q ss_pred HHHcCCChHHHHHHHHHhHhhc--CCCC----CcchHHHHHHHHhhcCCHHHHHHHHHhC---------CCCchhh-HHH
Q 038303 321 ACSHGGLVDQGLILFKAMSTVY--EIVP----QMQHYACVVDMYGRAGLLEEAEAFIREM---------PIEAEWS-VWG 384 (461)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~ 384 (461)
.+...|++++|+.++++..+.. -+.| ...+++.|...|...|++++|..++++. +..|+.. +++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3557889999988887775521 1222 2567888888999999999998888776 3445544 678
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhh-----cCCCC---hhHHHHHHHHHhccCChhhHHHHHHHHHHcCCc
Q 038303 385 ALLNACRIHRNDEMFDRIRQDLVN-----KKGVS---VGTFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446 (461)
Q Consensus 385 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 446 (461)
.|...|...|++++|+.+++++.+ ..|.. ..+...+..++...|++++|..++.++++.-.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888889999999999999998885 23333 445667888888999999999999999775433
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.13 E-value=3.9e-06 Score=61.59 Aligned_cols=89 Identities=10% Similarity=-0.030 Sum_probs=41.1
Q ss_pred CChHHHHHHHHHhHhhcC--CCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHH
Q 038303 326 GLVDQGLILFKAMSTVYE--IVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDR 401 (461)
Q Consensus 326 ~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 401 (461)
|++++|+..|++..+ .+ -+.+...+..+..+|.+.|++++|...|++. ...| +...+..+..++...|++++|+.
T Consensus 4 g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 444555555554444 11 1122344444555555555555555555554 2222 23344444444555555556655
Q ss_pred HHHHHhhcCCCChh
Q 038303 402 IRQDLVNKKGVSVG 415 (461)
Q Consensus 402 ~~~~~~~~~~~~~~ 415 (461)
.+++..+..|.++.
T Consensus 83 ~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 83 LLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHCCCHH
T ss_pred HHHHHHHhCCCcHH
Confidence 55555555554443
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.13 E-value=1.7e-05 Score=71.41 Aligned_cols=90 Identities=7% Similarity=-0.153 Sum_probs=76.3
Q ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038303 347 QMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTF 424 (461)
Q Consensus 347 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (461)
+...|..+..+|.+.|++++|...+++. ...| +...+..+..+|...|++++|+..++++.+..|.+...+..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3567788888999999999999999988 5445 4557777888899999999999999999999999999999999999
Q ss_pred hccCChhhHHHH
Q 038303 425 AGADRWEDTNKI 436 (461)
Q Consensus 425 ~~~g~~~~A~~~ 436 (461)
.+.++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 988888877653
No 188
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.11 E-value=1.6e-05 Score=58.67 Aligned_cols=93 Identities=8% Similarity=-0.067 Sum_probs=44.4
Q ss_pred HHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCC
Q 038303 318 LISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRN 395 (461)
Q Consensus 318 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 395 (461)
+...+.+.|++++|...|+...+ .-+.+...|..+..++...|++++|+..|++. ...| +...+..+..++...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 33444455555555555555544 12223444555555555555555555555554 2222 23344444445555555
Q ss_pred hHHHHHHHHHHhhcCCC
Q 038303 396 DEMFDRIRQDLVNKKGV 412 (461)
Q Consensus 396 ~~~a~~~~~~~~~~~~~ 412 (461)
+++|+..++++++..|.
T Consensus 101 ~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhCcC
Confidence 55555555555554443
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.09 E-value=1.6e-05 Score=62.17 Aligned_cols=101 Identities=8% Similarity=-0.088 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhc--------CC--------CC-CHhHHHHHHHHHHcCCChHHHHHHHHHhHh
Q 038303 278 ISWSTVISGLAMNGCGRQALQLFSLMIIN--------AV--------FP-DDVTFIALISACSHGGLVDQGLILFKAMST 340 (461)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--------g~--------~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 340 (461)
..+......+.+.|++++|+..|.+..+. .. .| +...|..+..+|.+.|++++|+..++...+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34555666677777777777777776653 00 11 124566666667777777777777777666
Q ss_pred hcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCchh
Q 038303 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEW 380 (461)
Q Consensus 341 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 380 (461)
--+.+...|..+..+|...|++++|...|++. ...|+.
T Consensus 92 --~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 92 --REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp --HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred --cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence 12344566666777777777777777777766 444443
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.03 E-value=2e-05 Score=69.98 Aligned_cols=151 Identities=9% Similarity=-0.039 Sum_probs=80.4
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcC
Q 038303 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHG 325 (461)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 325 (461)
...+..+...+.+.|++++|...|++....+.... .+...++.+++...+. ...|..+..+|.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 34567778888899999999999988763222111 1223334444433221 23677788888899
Q ss_pred CChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCchhh-HHHHHHHH-HHhcCChHHHHHH
Q 038303 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS-VWGALLNA-CRIHRNDEMFDRI 402 (461)
Q Consensus 326 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~-~~~~~~~~~a~~~ 402 (461)
|++++|+..++...+ ..+.+...|..+..+|...|++++|...|++. ...|+.. .+..+... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~--~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLT--EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988877 23346778888889999999999999999988 5555433 33334333 3455677788888
Q ss_pred HHHHhhcCCCC
Q 038303 403 RQDLVNKKGVS 413 (461)
Q Consensus 403 ~~~~~~~~~~~ 413 (461)
|+++....|.+
T Consensus 322 ~~~~l~~~p~~ 332 (338)
T 2if4_A 322 YKGIFKGKDEG 332 (338)
T ss_dssp -----------
T ss_pred HHHhhCCCCCC
Confidence 88887766544
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.00 E-value=3.2e-06 Score=61.21 Aligned_cols=92 Identities=9% Similarity=-0.104 Sum_probs=65.7
Q ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC------hhHHH
Q 038303 347 QMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVS------VGTFA 418 (461)
Q Consensus 347 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~ 418 (461)
+...+..+...+.+.|++++|...+++. ...| +...+..+..++...|++++|+..++++.+..|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3445666677777777777777777776 2223 44566667777888888888888888888877777 67777
Q ss_pred HHHHHHhccCChhhHHHHHH
Q 038303 419 LMSNTFAGADRWEDTNKIRD 438 (461)
Q Consensus 419 ~l~~~~~~~g~~~~A~~~~~ 438 (461)
.++.++...|++++|...++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 78888887777777665543
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.00 E-value=0.0005 Score=65.44 Aligned_cols=172 Identities=9% Similarity=-0.061 Sum_probs=132.1
Q ss_pred hcCC-HHHHHHHHHHccC--C-ChhhHHHHHHHHHhcCC----------hHHHHHHHHHHHhcCCCCCHhHHHHHHHHHH
Q 038303 258 KCGD-VGIAIQVFNMLAY--K-DKISWSTVISGLAMNGC----------GRQALQLFSLMIINAVFPDDVTFIALISACS 323 (461)
Q Consensus 258 ~~g~-~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 323 (461)
+.|. -++|.+.++.+.. | +...|+.--..+...|+ ++++++.++++.+...+ +..+|..-...+.
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~ 118 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLS 118 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 3444 4567888888774 3 44567666666666666 89999999999986544 6678888777888
Q ss_pred cCC--ChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcC-CHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhc-----
Q 038303 324 HGG--LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG-LLEEAEAFIREM-PIEA-EWSVWGALLNACRIH----- 393 (461)
Q Consensus 324 ~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----- 393 (461)
+.+ +++++++.++++.+ --+-+...|+.-...+.+.| .++++++.++++ ...| +...|+.....+.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 119 RLPEPNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HcccccHHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 888 66999999999988 23456677777777777888 899999999988 4444 556677666665442
Q ss_pred ---------CChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhh
Q 038303 394 ---------RNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWED 432 (461)
Q Consensus 394 ---------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 432 (461)
+.++++.+.+++++...|.+..+|..+...+.+.++.++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999888655
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.88 E-value=5.4e-05 Score=55.13 Aligned_cols=79 Identities=10% Similarity=0.011 Sum_probs=43.1
Q ss_pred HHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHh
Q 038303 330 QGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLV 407 (461)
Q Consensus 330 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 407 (461)
.|+..|++..+ ..+.+...+..+...|...|++++|...+++. ...| +...|..+..++...|++++|...++++.
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555544 22334555556666666666666666666655 2222 23345555555666666666666666665
Q ss_pred hcC
Q 038303 408 NKK 410 (461)
Q Consensus 408 ~~~ 410 (461)
+..
T Consensus 81 ~~~ 83 (115)
T 2kat_A 81 AAA 83 (115)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 194
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.86 E-value=0.00019 Score=66.68 Aligned_cols=121 Identities=7% Similarity=-0.119 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--------------HhHHHHHHHHHHcCCChHHHHHHHHHhHhhcC
Q 038303 278 ISWSTVISGLAMNGCGRQALQLFSLMIINAVFPD--------------DVTFIALISACSHGGLVDQGLILFKAMSTVYE 343 (461)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 343 (461)
..|..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++..+ -
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~ 346 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG--L 346 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--c
Confidence 3455555666666666666666666655321111 35666666777777777777777777766 2
Q ss_pred CCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCch-hhHHHHHHHHHHhcCChHHHH
Q 038303 344 IVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFD 400 (461)
Q Consensus 344 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~ 400 (461)
.+.+...|..+..+|...|++++|...|++. ...|+ ...+..+...+...++.+++.
T Consensus 347 ~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2345666667777777777777777777776 44443 335555555566666666554
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.86 E-value=7.1e-05 Score=52.88 Aligned_cols=64 Identities=19% Similarity=0.107 Sum_probs=43.9
Q ss_pred hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHH
Q 038303 379 EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR 442 (461)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 442 (461)
+...+..+...+...|++++|+..|+++.+..|.++.+|..++.+|.+.|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555666667777777777777777777777777777777777777777777777766654
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.82 E-value=9.1e-05 Score=51.01 Aligned_cols=79 Identities=13% Similarity=0.108 Sum_probs=48.8
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhc
Q 038303 349 QHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAG 426 (461)
Q Consensus 349 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (461)
..+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+..|.+..++..++.++.+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 44555556666666666666666655 2222 334555566666677777777777777777667777777766666654
Q ss_pred c
Q 038303 427 A 427 (461)
Q Consensus 427 ~ 427 (461)
.
T Consensus 90 ~ 90 (91)
T 1na3_A 90 Q 90 (91)
T ss_dssp H
T ss_pred c
Confidence 3
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.78 E-value=0.00029 Score=53.18 Aligned_cols=111 Identities=4% Similarity=-0.112 Sum_probs=60.8
Q ss_pred ChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCchhhHHHHHHHHHHh----cCChHHHHHH
Q 038303 327 LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI----HRNDEMFDRI 402 (461)
Q Consensus 327 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~ 402 (461)
++++|.+.|++..+ .+ .|.. . |...|...+..++|.++|++.-...+...+..+...|.. .++.++|.+.
T Consensus 10 d~~~A~~~~~~aa~-~g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACE-LN-EMFG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHH-TT-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHc-CC-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 34455555555544 23 1111 1 444444445555555555555222334444444444544 5666666666
Q ss_pred HHHHhhcCCCChhHHHHHHHHHhc----cCChhhHHHHHHHHHHcCC
Q 038303 403 RQDLVNKKGVSVGTFALMSNTFAG----ADRWEDTNKIRDEIRRMGL 445 (461)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 445 (461)
|++..+. .++..+..|+..|.. .+++++|.+.+++..+.|.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 6666654 345566677777766 6777777777777766654
No 198
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.78 E-value=0.00017 Score=64.82 Aligned_cols=91 Identities=10% Similarity=-0.065 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHccC----------------C---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 038303 249 GNAVINMYVKCGDVGIAIQVFNMLAY----------------K---DKISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309 (461)
Q Consensus 249 ~~~li~~~~~~g~~~~a~~~~~~~~~----------------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 309 (461)
+..+...+.+.|++++|...|++..+ . +...|..+..++.+.|++++|++.+++..+...
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p- 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP- 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-
Confidence 34455566666666666666655442 0 123344444444444444444444444444211
Q ss_pred CCHhHHHHHHHHHHcCCChHHHHHHHHHhHh
Q 038303 310 PDDVTFIALISACSHGGLVDQGLILFKAMST 340 (461)
Q Consensus 310 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 340 (461)
.+...+..+..+|...|++++|+..|++..+
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 1223344444444444444444444444433
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.73 E-value=0.00025 Score=65.94 Aligned_cols=123 Identities=9% Similarity=-0.107 Sum_probs=84.5
Q ss_pred HHHhcCChHHHHHHHHHHHhc---CCCCC----HhHHHHHHHHHHcCCChHHHHHHHHHhHhhc--CCCC----CcchHH
Q 038303 286 GLAMNGCGRQALQLFSLMIIN---AVFPD----DVTFIALISACSHGGLVDQGLILFKAMSTVY--EIVP----QMQHYA 352 (461)
Q Consensus 286 ~~~~~~~~~~a~~~~~~m~~~---g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~ 352 (461)
.+...|++++|+.++++..+. -+-|+ ..+++.|...|...|++++|+.++++..... -+.| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355678888888887776542 12222 2567788888888888888888877765411 1112 246678
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC---------CCCchhhH-HHHHHHHHHhcCChHHHHHHHHHHhh
Q 038303 353 CVVDMYGRAGLLEEAEAFIREM---------PIEAEWSV-WGALLNACRIHRNDEMFDRIRQDLVN 408 (461)
Q Consensus 353 ~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~ 408 (461)
.|...|...|++++|+.++++. +..|+... .+.+-.++...+.+++|+.++.++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888889998888888766 33455443 34445557788889999999988876
No 200
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.72 E-value=8e-05 Score=56.84 Aligned_cols=67 Identities=10% Similarity=-0.047 Sum_probs=44.9
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC-CC-------Cch-hhHH----HHHHHHHHhcCChHHHHHHHHHHhhcCCCChhH
Q 038303 350 HYACVVDMYGRAGLLEEAEAFIREM-PI-------EAE-WSVW----GALLNACRIHRNDEMFDRIRQDLVNKKGVSVGT 416 (461)
Q Consensus 350 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~p~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 416 (461)
.|..+..++.+.|++++|+..+++. .+ .|+ ...| .....++...|++++|+..|++.++..|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5566666666666666666666555 33 554 3456 677777888888888888888888776665433
No 201
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.68 E-value=0.00095 Score=63.55 Aligned_cols=151 Identities=9% Similarity=-0.022 Sum_probs=118.9
Q ss_pred CChHHHHHHHHHHHhcCCCCCH-hHHHHHHHHHHcCCC----------hHHHHHHHHHhHhhcCCCCCcchHHHHHHHHh
Q 038303 291 GCGRQALQLFSLMIINAVFPDD-VTFIALISACSHGGL----------VDQGLILFKAMSTVYEIVPQMQHYACVVDMYG 359 (461)
Q Consensus 291 ~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 359 (461)
...++|++.++++.+. .|+. ..|+.--..+...|+ +++++++++.+.+ ..+-+...|..-...+.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 3456789999999985 4444 556655555555555 8999999999988 34556777777777888
Q ss_pred hcC--CHHHHHHHHHhC-C-CCchhhHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCCChhHHHHHHHHHhcc-------
Q 038303 360 RAG--LLEEAEAFIREM-P-IEAEWSVWGALLNACRIHR-NDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGA------- 427 (461)
Q Consensus 360 ~~g--~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 427 (461)
+.| +++++++.++++ . ...+...|+.-...+.+.| .++++.+.++++++..|.+..+|+....++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 888 779999999999 3 2346677877777777788 899999999999999999999999999888763
Q ss_pred -------CChhhHHHHHHHHHHcCC
Q 038303 428 -------DRWEDTNKIRDEIRRMGL 445 (461)
Q Consensus 428 -------g~~~~A~~~~~~m~~~g~ 445 (461)
++++++++.+++......
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred ccccccHHHHHHHHHHHHHHHhhCC
Confidence 667999999988877543
No 202
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.66 E-value=0.0074 Score=43.63 Aligned_cols=141 Identities=9% Similarity=0.099 Sum_probs=105.1
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHH
Q 038303 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE 366 (461)
Q Consensus 287 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 366 (461)
+.-.|..++..++..+.... .+..-|+.+|--....-+-+-..++++.+-+.+.+. .+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHH
Confidence 44568888888888888764 355677777776667777777777777776533332 2344444
Q ss_pred HHHHHHhCCCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcCCc
Q 038303 367 AEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446 (461)
Q Consensus 367 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 446 (461)
...-+-.++ .+.......+......|.-+....+...+....++++.....++.+|.+.|+..+|.+++.+.-++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 444444442 234456667788889999999999999987788999999999999999999999999999999999986
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.62 E-value=6.5e-05 Score=57.21 Aligned_cols=84 Identities=4% Similarity=-0.132 Sum_probs=56.5
Q ss_pred cCCHHHHHHHHHhC-CCCc-hhhHHHHHHHHHHhcCC----------hHHHHHHHHHHhhcCCCChhHHHHHHHHHhccC
Q 038303 361 AGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRN----------DEMFDRIRQDLVNKKGVSVGTFALMSNTFAGAD 428 (461)
Q Consensus 361 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (461)
.+.+++|.+.+++. ...| +...|..+..++...++ +++|+..|+++++..|.+..+|..++.+|...|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 34455555555554 2222 33344444444444433 568888999998888888889999999988774
Q ss_pred -----------ChhhHHHHHHHHHHcC
Q 038303 429 -----------RWEDTNKIRDEIRRMG 444 (461)
Q Consensus 429 -----------~~~~A~~~~~~m~~~g 444 (461)
++++|++.|++..+..
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 7889999998887754
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.0003 Score=50.46 Aligned_cols=68 Identities=4% Similarity=-0.080 Sum_probs=61.3
Q ss_pred chhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcCC
Q 038303 378 AEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445 (461)
Q Consensus 378 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 445 (461)
++...+..+...+...|++++|+..++++.+..|.++.++..++.++.+.|++++|++.+++..+...
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 34566777888899999999999999999999999999999999999999999999999999987543
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.61 E-value=0.00023 Score=51.62 Aligned_cols=77 Identities=9% Similarity=-0.029 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 038303 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 295 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
+|++.+++..+... .+...+..+...+...|++++|+..|++..+. .+.+...|..+..+|...|++++|...|++.
T Consensus 3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45566666655422 24455666666666677777777777666651 2234556666666667777777777766665
No 206
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.54 E-value=0.00056 Score=47.26 Aligned_cols=69 Identities=6% Similarity=-0.026 Sum_probs=56.6
Q ss_pred chhhHHHHHHHHHHhcCC---hHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcCCc
Q 038303 378 AEWSVWGALLNACRIHRN---DEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446 (461)
Q Consensus 378 p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 446 (461)
++...+..+..++...++ .++|..+++++.+.+|.++.+...++..+.+.|++++|+..|+++.+....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 455566666666543333 789999999999999999999999999999999999999999999887655
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.49 E-value=0.00063 Score=46.57 Aligned_cols=66 Identities=9% Similarity=0.084 Sum_probs=59.8
Q ss_pred hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcC
Q 038303 379 EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444 (461)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 444 (461)
+...+..+...+...|++++|+..+++..+..|.++.++..++.++.+.|++++|...+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345677777789999999999999999999999999999999999999999999999999998764
No 208
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.42 E-value=5.6e-05 Score=67.62 Aligned_cols=236 Identities=8% Similarity=-0.037 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHcCCChHHHHHHHhcC-CCCCCchhHHHHHHHhcccch
Q 038303 45 IFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI-DVKPNANTLVSVLSACSSLVS 123 (461)
Q Consensus 45 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~p~~~~~~~ll~~~~~~~~ 123 (461)
+..|+.|..+....++..+|++-|=+ ..|+..|..+|.+..+.|.+++-++.+.-. ...-++..=+.|+-+|++.++
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~r 131 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNR 131 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCc
Confidence 44666666666666666666554422 245556777777777777777777766555 333344444566677777776
Q ss_pred hHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCC------------------------CchhHHHH
Q 038303 124 HKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPK------------------------RNVVSWTT 179 (461)
Q Consensus 124 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------------------~~~~~~~~ 179 (461)
+.+.++++ -.||..-...+.+-|...|.++.|.-+|..+.. .++.||-.
T Consensus 132 L~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKe 204 (624)
T 3lvg_A 132 LAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKE 204 (624)
T ss_dssp SSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHH
T ss_pred HHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHH
Confidence 65544432 124555556667777777777777777766542 36678888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhc
Q 038303 180 MIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKC 259 (461)
Q Consensus 180 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 259 (461)
+-.+|...+++.-|.-.--.++-.. | ....++..|-+.|.+++.+.+++.-.. --......++-|.-.|++-
T Consensus 205 V~~ACvd~~EfrLAqicGLniIvha----d--eL~elv~~YE~~G~f~ELIsLlEaglg--lErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 205 VCFACVDGKEFRLAQMCGLHIVVHA----D--ELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKF 276 (624)
T ss_dssp HTHHHHHSCTTTTTTHHHHHHHCCS----S--CCSGGGSSSSTTCCCTTSTTTHHHHTT--STTCCHHHHHHHHHHHHSS
T ss_pred HHHHHhCchHHHHHHHhcchhcccH----H--HHHHHHHHHHhCCCHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHhc
Confidence 8888888888877765555544322 1 122345557778888888877776532 1224455677777777765
Q ss_pred CCHHHHHHHHHHccC----C-------ChhhHHHHHHHHHhcCChHHHHH
Q 038303 260 GDVGIAIQVFNMLAY----K-------DKISWSTVISGLAMNGCGRQALQ 298 (461)
Q Consensus 260 g~~~~a~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~a~~ 298 (461)
+.++..+.++..-. | ....|.-++-.|++-.++|.|..
T Consensus 277 -~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 277 -KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp -CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred -CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 45555555544332 2 44568888888888888886654
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.42 E-value=0.00039 Score=63.44 Aligned_cols=82 Identities=7% Similarity=-0.035 Sum_probs=50.3
Q ss_pred cCCHHHHHHHHHhC---------CCCchh-hHHHHHHHHHHhcCChHHHHHHHHHHhh-----cC---CCChhHHHHHHH
Q 038303 361 AGLLEEAEAFIREM---------PIEAEW-SVWGALLNACRIHRNDEMFDRIRQDLVN-----KK---GVSVGTFALMSN 422 (461)
Q Consensus 361 ~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~---~~~~~~~~~l~~ 422 (461)
.|++++|+.++++. +..|+. .+++.+..+|...|++++|+.+++++++ .. |....+++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35566666665544 223333 3566666667777777777777777664 11 223446777777
Q ss_pred HHhccCChhhHHHHHHHHHH
Q 038303 423 TFAGADRWEDTNKIRDEIRR 442 (461)
Q Consensus 423 ~~~~~g~~~~A~~~~~~m~~ 442 (461)
.|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 77777777777777776543
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.39 E-value=0.00027 Score=53.84 Aligned_cols=96 Identities=7% Similarity=-0.010 Sum_probs=65.3
Q ss_pred ccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCh----------hhHHHHHhcCCC---CchhHHHHHHHHHHh
Q 038303 120 SLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSL----------ASCGYLFVKMPK---RNVVSWTTMIGGYAE 186 (461)
Q Consensus 120 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~---~~~~~~~~li~~~~~ 186 (461)
+.+.+++|.+.++..++..+. +...|+.+..++...+++ ++|+..|++..+ .+..+|..+..+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 445667777777777776555 666666666666666654 367777766654 345567777777776
Q ss_pred c-----------CChHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 038303 187 R-----------GFCKEAVSVFQEMEKTKEAEPNEATLVNVLSA 219 (461)
Q Consensus 187 ~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~ 219 (461)
. |++++|++.|++..+ +.|+...|...+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~---l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH---hCCCCHHHHHHHHH
Confidence 5 478999999999888 77877766555443
No 211
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.35 E-value=0.0023 Score=48.10 Aligned_cols=111 Identities=8% Similarity=-0.113 Sum_probs=77.8
Q ss_pred CChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhh----cCCHHH
Q 038303 291 GCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGR----AGLLEE 366 (461)
Q Consensus 291 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 366 (461)
+++++|++.|++..+.| .|+.. +...|...+.+++|.+.|++..+ . -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 45677888888887776 22322 55566666777778888887777 2 345666677777776 778888
Q ss_pred HHHHHHhCCCCchhhHHHHHHHHHHh----cCChHHHHHHHHHHhhcC
Q 038303 367 AEAFIREMPIEAEWSVWGALLNACRI----HRNDEMFDRIRQDLVNKK 410 (461)
Q Consensus 367 A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 410 (461)
|.++|++.-...+...+..+...|.. .++.++|...+++..+..
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888887323455566667667776 788888888888887754
No 212
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.30 E-value=0.0011 Score=46.66 Aligned_cols=63 Identities=11% Similarity=0.003 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHh
Q 038303 277 KISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340 (461)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 340 (461)
...+..+...+...|++++|+..|++..+.... +...|..+..+|...|++++|...|++..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334445555555555555555555555553211 234455555555555555555555555443
No 213
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.27 E-value=1.1e-05 Score=72.15 Aligned_cols=213 Identities=11% Similarity=0.102 Sum_probs=156.4
Q ss_pred CceeHHHHHHHHHcCCChHHHHHHHhcCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 038303 75 DVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYI 154 (461)
Q Consensus 75 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 154 (461)
.+..|..|..+..+.+++.+|++.|-+. -|+..|..++.++.+.|.++.-..++...++..- ++.+-+.|+-+|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA 127 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA 127 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 4456999999999999999999988433 4667799999999999999999999888776633 4455578999999
Q ss_pred HcCChhhHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHhc-------------------CCCCCChhhHHH
Q 038303 155 RCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKT-------------------KEAEPNEATLVN 215 (461)
Q Consensus 155 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------------------~~~~~~~~~~~~ 215 (461)
+.+++.+-++++.. |+..-...+..-|...|.++.|.-+|..+-.. -.-..+..||..
T Consensus 128 k~~rL~elEefl~~---~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKe 204 (624)
T 3lvg_A 128 KTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKE 204 (624)
T ss_dssp TSCSSSTTTSTTSC---CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHH
T ss_pred hhCcHHHHHHHHcC---CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHH
Confidence 99998765544332 66666667777777788877777666654221 112356789999
Q ss_pred HHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHcc---CCChhhHHHHHHHHHhcCC
Q 038303 216 VLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA---YKDKISWSTVISGLAMNGC 292 (461)
Q Consensus 216 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 292 (461)
+-.+|...+.+..|...--.+.- .++. ...++..|-..|.+++-+.+++.-. +.....|+-|.-.|++- +
T Consensus 205 V~~ACvd~~EfrLAqicGLniIv----hade--L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~ 277 (624)
T 3lvg_A 205 VCFACVDGKEFRLAQMCGLHIVV----HADE--LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-K 277 (624)
T ss_dssp HTHHHHHSCTTTTTTHHHHHHHC----CSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-C
T ss_pred HHHHHhCchHHHHHHHhcchhcc----cHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-C
Confidence 99999999998888766554433 2222 1456777889999999999998765 45777888888888775 5
Q ss_pred hHHHHHHHHH
Q 038303 293 GRQALQLFSL 302 (461)
Q Consensus 293 ~~~a~~~~~~ 302 (461)
+++.++.++.
T Consensus 278 PeKlmEHlkl 287 (624)
T 3lvg_A 278 PQKMREHLEL 287 (624)
T ss_dssp TTHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 5655555544
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.26 E-value=0.00099 Score=60.91 Aligned_cols=90 Identities=13% Similarity=-0.021 Sum_probs=49.4
Q ss_pred HHHHHcCCChHHHHHHHHHhHhhc--CCCCC----cchHHHHHHHHhhcCCHHHHHHHHHhC---------CCCchhh-H
Q 038303 319 ISACSHGGLVDQGLILFKAMSTVY--EIVPQ----MQHYACVVDMYGRAGLLEEAEAFIREM---------PIEAEWS-V 382 (461)
Q Consensus 319 l~~~~~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~ 382 (461)
+..+.+.|++++|+.++++..... -+.|+ ..+++.|...|...|++++|+.++++. +..|+.. +
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444555666666666666655411 11121 345556666666666666666666554 2233332 4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhh
Q 038303 383 WGALLNACRIHRNDEMFDRIRQDLVN 408 (461)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 408 (461)
++.|...|...|++++|+.+++++.+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 55555556666666666666666665
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.23 E-value=0.00048 Score=48.26 Aligned_cols=79 Identities=15% Similarity=-0.024 Sum_probs=51.7
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCc-hhh-HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCCh
Q 038303 354 VVDMYGRAGLLEEAEAFIREM-PIEA-EWS-VWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRW 430 (461)
Q Consensus 354 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 430 (461)
....+.+.|++++|...+++. ...| +.. .+..+..++...|++++|+..|+++.+..|.+..++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 345566777788888777776 3333 334 56666666777888888888888888877777766532 445
Q ss_pred hhHHHHHHHH
Q 038303 431 EDTNKIRDEI 440 (461)
Q Consensus 431 ~~A~~~~~~m 440 (461)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.16 E-value=0.037 Score=55.48 Aligned_cols=101 Identities=15% Similarity=0.124 Sum_probs=58.7
Q ss_pred HHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHH
Q 038303 256 YVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILF 335 (461)
Q Consensus 256 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 335 (461)
....|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++-
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 345677777777765553 456777777777777777777777777643 233444444456655554444
Q ss_pred HHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 038303 336 KAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
+.... .| -++.-..+|.+.|++++|.+++.++
T Consensus 731 ~~a~~-~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 731 KDAET-TG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHH-cC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 43333 11 1233334455566666666666555
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.08 E-value=0.0017 Score=45.35 Aligned_cols=60 Identities=10% Similarity=0.160 Sum_probs=54.5
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCChh-HHHHHHHHHhccCChhhHHHHHHHHHHcCCc
Q 038303 387 LNACRIHRNDEMFDRIRQDLVNKKGVSVG-TFALMSNTFAGADRWEDTNKIRDEIRRMGLK 446 (461)
Q Consensus 387 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 446 (461)
...+...|++++|+..++++.+..|.++. .+..++.+|...|++++|.+.+++..+....
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 44578899999999999999999999999 9999999999999999999999999886543
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.02 E-value=0.0028 Score=57.88 Aligned_cols=85 Identities=8% Similarity=-0.039 Sum_probs=63.8
Q ss_pred cCCChHHHHHHHHHhHhhc--CCCCC----cchHHHHHHHHhhcCCHHHHHHHHHhC---------CCCchhh-HHHHHH
Q 038303 324 HGGLVDQGLILFKAMSTVY--EIVPQ----MQHYACVVDMYGRAGLLEEAEAFIREM---------PIEAEWS-VWGALL 387 (461)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~l~ 387 (461)
..|++++|+.++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++. +..|+.. +++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578888888887765421 12222 467788888899999999998888776 3445544 678888
Q ss_pred HHHHhcCChHHHHHHHHHHhh
Q 038303 388 NACRIHRNDEMFDRIRQDLVN 408 (461)
Q Consensus 388 ~~~~~~~~~~~a~~~~~~~~~ 408 (461)
..|...|++++|+.+++++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 889999999999999998876
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.97 E-value=0.053 Score=54.30 Aligned_cols=101 Identities=15% Similarity=0.180 Sum_probs=66.4
Q ss_pred HHHcCCChHHHHH-HHhcCCCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHH
Q 038303 85 GLSKCGFHKEAID-MFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCG 163 (461)
Q Consensus 85 ~~~~~~~~~~a~~-~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 163 (461)
.....+++++|.+ ++..+ |+......++..+.+.|..+.|.++.+ +.. .-.......|++++|.
T Consensus 608 ~~~~~~~~~~a~~~~l~~i---~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV---EGKDSLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQLTLAR 672 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC---CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTCHHHHH
T ss_pred HHHHhCCHHHHHHHHHhcC---CchHHHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCCHHHHH
Confidence 3345677777776 54332 212233556666666677666665532 111 1234456778999998
Q ss_pred HHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038303 164 YLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202 (461)
Q Consensus 164 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 202 (461)
++.+.+. +...|..+...+.+.++++.|.+.|.++.+
T Consensus 673 ~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 673 DLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 8887774 557888999999999999999999988754
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.93 E-value=0.026 Score=49.49 Aligned_cols=137 Identities=12% Similarity=-0.013 Sum_probs=64.5
Q ss_pred CChhhHHHHHHHHHh--cC---ChHHHHHHHHHHHhcCCCCCH-hHHHHHHHHHHc----CCCh-HHH---HHHHHHhHh
Q 038303 275 KDKISWSTVISGLAM--NG---CGRQALQLFSLMIINAVFPDD-VTFIALISACSH----GGLV-DQG---LILFKAMST 340 (461)
Q Consensus 275 ~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~----~~~~-~~a---~~~~~~~~~ 340 (461)
.+...|...+++... .+ +..+|..+|++..+. .|+. ..+..+..+|.- .+.. ... ...++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 366777777765432 22 346788888888874 4553 444444444430 0000 000 011111111
Q ss_pred hcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 038303 341 VYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVS 413 (461)
Q Consensus 341 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 413 (461)
....+.+..+|..+...+...|++++|...++++ ...|+...|..+...+...|+.++|.+.++++.+..|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 0122334444444444444445555555555555 223444444444444555555555555555555554433
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.92 E-value=0.016 Score=52.84 Aligned_cols=87 Identities=10% Similarity=-0.072 Sum_probs=54.8
Q ss_pred HHHHhhcCCHHHHHHHHHhC---------CCCch-hhHHHHHHHHHHhcCChHHHHHHHHHHhhc-----C---CCChhH
Q 038303 355 VDMYGRAGLLEEAEAFIREM---------PIEAE-WSVWGALLNACRIHRNDEMFDRIRQDLVNK-----K---GVSVGT 416 (461)
Q Consensus 355 ~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~ 416 (461)
+..+.+.|++++|+.++++. +..|+ ..+++.+..+|...|++++|+.+++++++. . |....+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455667777777777655 11222 235666777777777777777777776641 1 223446
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHH
Q 038303 417 FALMSNTFAGADRWEDTNKIRDEIR 441 (461)
Q Consensus 417 ~~~l~~~~~~~g~~~~A~~~~~~m~ 441 (461)
++.|+..|...|++++|..++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7777777777777777777777653
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.91 E-value=0.12 Score=45.48 Aligned_cols=73 Identities=10% Similarity=0.040 Sum_probs=51.5
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHH
Q 038303 275 KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYA 352 (461)
Q Consensus 275 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 352 (461)
.+...|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++... +.|...+|.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~~t~~ 347 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCcChHH
Confidence 356667766666666688888888888887754 6766666666777778888888888877765 346555544
No 223
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.72 E-value=0.44 Score=45.52 Aligned_cols=113 Identities=10% Similarity=-0.030 Sum_probs=65.9
Q ss_pred ChHHHHHHHHHHHhcCCCCCHhHHH----HHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHH
Q 038303 292 CGRQALQLFSLMIINAVFPDDVTFI----ALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEA 367 (461)
Q Consensus 292 ~~~~a~~~~~~m~~~g~~p~~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 367 (461)
+.+.|...+....+... .+..... .+.......+...++...+..... ..++.....-.+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHH
Confidence 77888888888765432 2332222 222223334435566666665433 123333344444555577889999
Q ss_pred HHHHHhCCCCc-h-hhHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 038303 368 EAFIREMPIEA-E-WSVWGALLNACRIHRNDEMFDRIRQDLVN 408 (461)
Q Consensus 368 ~~~~~~~~~~p-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 408 (461)
...|+.|+..+ + ..-..-+..++...|+.++|..+|+.+.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99888884432 2 22233345566778888888888888865
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.55 E-value=0.012 Score=49.44 Aligned_cols=87 Identities=8% Similarity=0.038 Sum_probs=62.6
Q ss_pred HHHHHHHHHhC-CCCch---hhHHHHHHHHHHh-----cCChHHHHHHHHHHhhcCCCC-hhHHHHHHHHHhcc-CChhh
Q 038303 364 LEEAEAFIREM-PIEAE---WSVWGALLNACRI-----HRNDEMFDRIRQDLVNKKGVS-VGTFALMSNTFAGA-DRWED 432 (461)
Q Consensus 364 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~ 432 (461)
...|...+++. .+.|+ ...|..+...|.. .|+.+.|.+.|++.++..|.. ..++..++..+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555555 44444 4466666666766 488888888888888888864 88888888888884 88888
Q ss_pred HHHHHHHHHHcCCccccC
Q 038303 433 TNKIRDEIRRMGLKKKTG 450 (461)
Q Consensus 433 A~~~~~~m~~~g~~~~~~ 450 (461)
|.+.+++..+.....+|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 888888888877664444
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.21 Score=38.52 Aligned_cols=128 Identities=13% Similarity=0.104 Sum_probs=83.6
Q ss_pred HHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHH
Q 038303 255 MYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLIL 334 (461)
Q Consensus 255 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 334 (461)
.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+.-.++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345678888888887766 4567888888888888888888888887654 34444456666777666555
Q ss_pred HHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCchhhHHHHHHHHHHhcCChHHHHHHHHHH
Q 038303 335 FKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDL 406 (461)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 406 (461)
-+.... .| -++.-...+.-.|+++++.++|.+.+.-|... ......|..+.|.++.+.+
T Consensus 83 a~iA~~-~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQT-RE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHH-Cc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 444433 22 23444556667788888888888875433222 1123456667777776655
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.37 E-value=0.031 Score=39.31 Aligned_cols=71 Identities=8% Similarity=-0.079 Sum_probs=46.1
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC-----C----CCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHH
Q 038303 350 HYACVVDMYGRAGLLEEAEAFIREM-----P----IEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALM 420 (461)
Q Consensus 350 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 420 (461)
-+..|...+.+.|+++.|...++.. + ..+....+..+..++.+.|+++.|...++++.+..|.+..+...+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 3445555666666666666666554 0 123445667777778888888888888888888777776665444
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.30 E-value=0.017 Score=43.48 Aligned_cols=91 Identities=8% Similarity=-0.123 Sum_probs=66.9
Q ss_pred CChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcC---CHHHHHHHHHhC-CCC-c--hhhHHHHHHHHHHhcCChHH
Q 038303 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG---LLEEAEAFIREM-PIE-A--EWSVWGALLNACRIHRNDEM 398 (461)
Q Consensus 326 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~ 398 (461)
+....+.+-|.+... .+ +++..+...+.-++++.+ +.+++..+|++. ... | +...+..+.-+|.+.|+++.
T Consensus 12 ~~l~~~~~~y~~e~~-~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHH-TT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 345566677766655 23 377788888888999988 666899999887 333 5 23445556666899999999
Q ss_pred HHHHHHHHhhcCCCChhHHH
Q 038303 399 FDRIRQDLVNKKGVSVGTFA 418 (461)
Q Consensus 399 a~~~~~~~~~~~~~~~~~~~ 418 (461)
|.+.++.+.+..|.+..+..
T Consensus 90 A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHH
Confidence 99999999999998875544
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.17 E-value=0.039 Score=41.46 Aligned_cols=86 Identities=12% Similarity=0.003 Sum_probs=59.4
Q ss_pred ChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCC---ChHHHHHHHHHhHhhcCCCC--CcchHHHHHHHHhhcCCHHH
Q 038303 292 CGRQALQLFSLMIINAVFPDDVTFIALISACSHGG---LVDQGLILFKAMSTVYEIVP--QMQHYACVVDMYGRAGLLEE 366 (461)
Q Consensus 292 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~ 366 (461)
....+.+-|.+..+.|. ++..+...+..++++++ ++++++.+|+...+ .. .| +...+-.|.-++.+.|++++
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~-~~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP-KG-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH-HS-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-cC-CccchHHHHHHHHHHHHHccCHHH
Confidence 34556666766666554 57777777777788877 56688888888877 22 23 34555567777888888888
Q ss_pred HHHHHHhC-CCCchh
Q 038303 367 AEAFIREM-PIEAEW 380 (461)
Q Consensus 367 A~~~~~~~-~~~p~~ 380 (461)
|.+.++.+ .+.|+.
T Consensus 90 A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhcCCCC
Confidence 88888887 555643
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.14 E-value=0.05 Score=40.35 Aligned_cols=110 Identities=7% Similarity=0.042 Sum_probs=53.5
Q ss_pred CHhHHHHHHHHHHcCCCh------HHHHHHHHHhHhhcCCCCCcc-hHHHHHHH------HhhcCCHHHHHHHHHhC-CC
Q 038303 311 DDVTFIALISACSHGGLV------DQGLILFKAMSTVYEIVPQMQ-HYACVVDM------YGRAGLLEEAEAFIREM-PI 376 (461)
Q Consensus 311 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~-~~ 376 (461)
|..++-..+....+.|+. ++..++|++... .++|+.. .|...|.. +...++.++|.++|+.+ ..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 445666666666666776 666677776665 4555421 11122211 12235555666665555 11
Q ss_pred C-chhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHH
Q 038303 377 E-AEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSN 422 (461)
Q Consensus 377 ~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 422 (461)
. .-...|.....--.++|+...|.+++.+.+...|.+...+...++
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 0 012233333333445566666666666665555544444444433
No 230
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.07 E-value=0.85 Score=41.74 Aligned_cols=252 Identities=11% Similarity=0.011 Sum_probs=145.9
Q ss_pred hCCHHHHHHHHHHHHHh-----CCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CceeHHHHHH----HHHcCC
Q 038303 23 AHPHQKALEIHAHVIEY-----GHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP---DVVSWTTIIS----GLSKCG 90 (461)
Q Consensus 23 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~----~~~~~~ 90 (461)
.|++++|++.+-.+.+. +...+......++..|...|+++...+.+.-+.+. -......+++ .+....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 46788888887776653 23345667788999999999999887766555221 1122223333 222223
Q ss_pred C--hHHHHHHHhcC-CCCCC--------chhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCC-----hhHHHHHHHHHH
Q 038303 91 F--HKEAIDMFCGI-DVKPN--------ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENN-----IILDNAILDFYI 154 (461)
Q Consensus 91 ~--~~~a~~~~~~m-~~~p~--------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~ 154 (461)
. .+.-+.+.+.. .+... ...-..|...+...|++.+|..++..+...-...+ ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2 23334444444 22111 11224566778888999999999998864422222 346677788899
Q ss_pred HcCChhhHHHHHhcCCC--------Cc--hhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHH----Hh
Q 038303 155 RCGSLASCGYLFVKMPK--------RN--VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLS----AC 220 (461)
Q Consensus 155 ~~g~~~~a~~~~~~~~~--------~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~----~~ 220 (461)
..+++.+|..++.++.. |+ ...|...+..+...+++.+|...|.+..+......|...+...+. +.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~ 268 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFL 268 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 99999999988887631 11 234666777888899999999888887653212233332222211 11
Q ss_pred hccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhc--CCHHHHHHHHHHccCC
Q 038303 221 SSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKC--GDVGIAIQVFNMLAYK 275 (461)
Q Consensus 221 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~ 275 (461)
.-.+....-..+...... ....++...+..++.+|... .++..+.+.|.....+
T Consensus 269 iLa~~~~~~~~ll~~~~~-~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~ 324 (445)
T 4b4t_P 269 VLSPYGNLQNDLIHKIQN-DNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNE 324 (445)
T ss_dssp HHSSCSSTTHHHHHSHHH-HSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTT
T ss_pred HhCCCCchHHHHHHHHhh-cccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcc
Confidence 111111222223333333 23334566777788877653 3466666666655543
No 231
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.90 E-value=0.039 Score=37.83 Aligned_cols=67 Identities=9% Similarity=-0.056 Sum_probs=37.7
Q ss_pred CCcchHHHHHHHHhhcCC---HHHHHHHHHhC-CCCch-hhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 038303 346 PQMQHYACVVDMYGRAGL---LEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDRIRQDLVNKKGV 412 (461)
Q Consensus 346 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 412 (461)
.++..+..+..++...++ .++|..++++. ...|+ +.....+...+.+.|++++|+..|+++.+..|+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 445555555555544333 56666666666 33333 333344444466677777777777777666655
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.5 Score=36.47 Aligned_cols=130 Identities=9% Similarity=-0.011 Sum_probs=84.4
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHcCCChHHHHHHHhcCCCCCCchhHHHHHHHhcccchhHHHHHHHH
Q 038303 53 HFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNANTLVSVLSACSSLVSHKLGKAIHA 132 (461)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 132 (461)
......|+++.|.++.+.+ .+...|..|.......|+++-|.++|...+ -|..+.-.|...|+.+...++-+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~------D~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQH------SFDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhC------CHHHHHHHHHHhCCHHHHHHHHH
Confidence 4445678888888887776 456678888888888899888888887761 23444444555666666665555
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038303 133 HSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME 201 (461)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 201 (461)
.....|- ++.....+...|+++++.++|.+..+...... .....|-.+.|.++.+++.
T Consensus 85 iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~-----~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 85 IAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA-----VAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH-----HHHHTTCHHHHHHHHHHTT
T ss_pred HHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH-----HHHHcCcHHHHHHHHHHhC
Confidence 5544432 35555667778899999888877765221111 1222556677777776653
No 233
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.68 E-value=2 Score=42.93 Aligned_cols=254 Identities=11% Similarity=-0.034 Sum_probs=123.4
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHH--HHhhccchhhhHHHHHHHHHhhcCC------CCcchHHHHHHH
Q 038303 183 GYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVL--SACSSISALSFGKYVHSYISTRYDL------SVSNLVGNAVIN 254 (461)
Q Consensus 183 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l--~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~li~ 254 (461)
+....|+.++++.++..-...+ ...+..+-...+ -+....|....+..++......... .+......++.-
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~-~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGS-RASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTS-CCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhcccc-CCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3455667777666665543311 112222222222 2233444444566655555442210 111222233333
Q ss_pred HHHhcCC-HHHHHHHHHHcc-CCChhh--HH--HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHH--HHHcCC
Q 038303 255 MYVKCGD-VGIAIQVFNMLA-YKDKIS--WS--TVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALIS--ACSHGG 326 (461)
Q Consensus 255 ~~~~~g~-~~~a~~~~~~~~-~~~~~~--~~--~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~~ 326 (461)
+++-.|. -+++.+.+..+. ..+... .. ++...++-.|+.+....++..+.+. .+......+.. ++...|
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTT
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCC
Confidence 3333332 234444444433 333221 11 2222344567777777777766653 12233333333 344678
Q ss_pred ChHHHHHHHHHhHhhcCCCCCcchHH--HHHHHHhhcCCHHHHHHHHHhCC--CCchhhHHHHHHHHHHhcCChHHHHHH
Q 038303 327 LVDQGLILFKAMSTVYEIVPQMQHYA--CVVDMYGRAGLLEEAEAFIREMP--IEAEWSVWGALLNACRIHRNDEMFDRI 402 (461)
Q Consensus 327 ~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~ 402 (461)
+.+.+..+++.+.. ...|....-. ++.-+|+..|+.....+++..+. ...++.....+.-++...|+.+.+.++
T Consensus 539 ~~e~~~~li~~L~~--~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 539 RQELADDLITKMLA--SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp CGGGGHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred ChHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 88888888888776 2223333222 23445677788777777888772 223333222222335556777767777
Q ss_pred HHHHhhcCCCChhHHHHHHHHHhccCCh-hhHHHHHHHHHH
Q 038303 403 RQDLVNKKGVSVGTFALMSNTFAGADRW-EDTNKIRDEIRR 442 (461)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~ 442 (461)
++.+.+...+....-..++-+....|+. .+|..++..+..
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 7666554433333333444444445554 567888887753
No 234
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.52 E-value=0.078 Score=37.19 Aligned_cols=65 Identities=5% Similarity=-0.079 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhhcC-------CCChhHHHHHHHHHhccCChhhHHHHHHHHHHcC
Q 038303 380 WSVWGALLNACRIHRNDEMFDRIRQDLVNKK-------GVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMG 444 (461)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 444 (461)
...+..+...+...++++.|...++.+.+.. +....++..++.+|.+.|++++|...+++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 3445667777999999999999999988732 3457789999999999999999999999997743
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.43 E-value=0.5 Score=34.37 Aligned_cols=65 Identities=11% Similarity=-0.015 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCC
Q 038303 175 VSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDL 242 (461)
Q Consensus 175 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~ 242 (461)
...+.-+..+..+|+-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.+..+ .|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n--~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~-kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN--NEVSASILVAIANALRRVGDERDATTLLIEACK-KGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc--CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH-hhh
Confidence 34445566677777777777777775332 667777777777777777777777777777666 444
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.18 E-value=0.12 Score=50.30 Aligned_cols=51 Identities=6% Similarity=-0.035 Sum_probs=48.9
Q ss_pred HHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHH
Q 038303 390 CRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEI 440 (461)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 440 (461)
|...|+++.|+.+.+++....|.+..+|..|+.+|...|+|+.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 678899999999999999999999999999999999999999999999887
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.11 E-value=0.34 Score=34.97 Aligned_cols=89 Identities=9% Similarity=-0.104 Sum_probs=52.6
Q ss_pred hHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHH---HHHHHHhC-CCC-c-hhh-HHHHHHHHHHhcCChHHHH
Q 038303 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEE---AEAFIREM-PIE-A-EWS-VWGALLNACRIHRNDEMFD 400 (461)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p-~~~-~~~~l~~~~~~~~~~~~a~ 400 (461)
+..+.+-|..... .|. |+..+--.+..++++...... ++.++++. ... | ... ....+.-++.+.|+++.|.
T Consensus 17 l~~~~~~y~~e~~-~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKA-AGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHH-HSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhc-cCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444444544433 232 555555566667777666555 66666666 222 3 222 2333444577888888888
Q ss_pred HHHHHHhhcCCCChhHHH
Q 038303 401 RIRQDLVNKKGVSVGTFA 418 (461)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~ 418 (461)
+.++.+.+..|.+..+..
T Consensus 95 ~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhCCCCHHHHH
Confidence 888888888887765543
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.06 E-value=1.9 Score=39.44 Aligned_cols=94 Identities=10% Similarity=0.100 Sum_probs=60.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhc--CCCCC---HhHHHHHHHHHHcCCChHHHHHHHHHhHhh-cCCCCC----cch
Q 038303 281 STVISGLAMNGCGRQALQLFSLMIIN--AVFPD---DVTFIALISACSHGGLVDQGLILFKAMSTV-YEIVPQ----MQH 350 (461)
Q Consensus 281 ~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~----~~~ 350 (461)
..|...+-..|++.+|..++.++... |..+. ...+...++.|...+++.+|..++.++... ....++ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45667777788888888888887542 22111 134556667788888888888888776431 111222 234
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC
Q 038303 351 YACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 351 ~~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
+...+..+...+++.+|.+.|.+.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 556667777778888888777766
No 239
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.71 E-value=1.7 Score=36.68 Aligned_cols=111 Identities=11% Similarity=0.069 Sum_probs=70.9
Q ss_pred cCCHHHHHHHHHHccCCCh--hhHHHHHHH-HHhc--CC------hHHHHHHHHHHHhcCCCCC---HhHHHHHHHHHHc
Q 038303 259 CGDVGIAIQVFNMLAYKDK--ISWSTVISG-LAMN--GC------GRQALQLFSLMIINAVFPD---DVTFIALISACSH 324 (461)
Q Consensus 259 ~g~~~~a~~~~~~~~~~~~--~~~~~l~~~-~~~~--~~------~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~ 324 (461)
.++..+..+.+......++ ..|..++.+ +... |+ ...|...+++..+ +.|+ ...|..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 3444445555555554333 345555442 3332 32 4456666777766 4555 3577777777777
Q ss_pred C-----CChHHHHHHHHHhHhhcCCCC--CcchHHHHHHHHhhc-CCHHHHHHHHHhC
Q 038303 325 G-----GLVDQGLILFKAMSTVYEIVP--QMQHYACVVDMYGRA-GLLEEAEAFIREM 374 (461)
Q Consensus 325 ~-----~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 374 (461)
. |+.++|.+.|++..+ +.| +..++....+.+++. |+.+++.+.+++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3 888888888888877 334 366777777878774 8888888888877
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.27 E-value=0.72 Score=34.31 Aligned_cols=47 Identities=6% Similarity=-0.048 Sum_probs=21.3
Q ss_pred CChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 038303 326 GLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 326 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
++.++|.++|+.+... .-.- ...|-...+.-.+.|+...|.+++.+.
T Consensus 74 ~D~d~aR~vy~~a~~~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 74 QEPDDARDYFQMARAN-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp HCGGGCHHHHHHHHHH-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4555555555555431 1111 334444444444555555555555544
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.13 E-value=0.19 Score=45.21 Aligned_cols=68 Identities=10% Similarity=0.020 Sum_probs=54.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHH-----cCCccccCc
Q 038303 384 GALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRR-----MGLKKKTGC 451 (461)
Q Consensus 384 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~ 451 (461)
..++..+...|+++++...+..+....|-+...|..++.++.+.|+..+|++.|++..+ .|+.|++.+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34556667788888888888888888888888888888888888888888888888643 488887754
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.17 E-value=0.86 Score=34.58 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=19.5
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 038303 349 QHYACVVDMYGRAGLLEEAEAFIREMPI 376 (461)
Q Consensus 349 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 376 (461)
+.--.+..+|.+.+++++|+.+++.++.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 3444466777778888888888777743
No 243
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.08 E-value=1.7 Score=31.35 Aligned_cols=86 Identities=13% Similarity=0.021 Sum_probs=57.4
Q ss_pred CChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHH---HHHHHHHhHhhcCCCC--CcchHHHHHHHHhhcCCHH
Q 038303 291 GCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQ---GLILFKAMSTVYEIVP--QMQHYACVVDMYGRAGLLE 365 (461)
Q Consensus 291 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 365 (461)
.....+.+-|.+....|. |+..+-..+..++.++.+... ++.+++.+.+ .+ .| .....-.|.-++.+.|+++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~-~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-KG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-TS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-cC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 344455666666555554 677766677777888776665 8888888776 22 23 3444555677888899999
Q ss_pred HHHHHHHhC-CCCch
Q 038303 366 EAEAFIREM-PIEAE 379 (461)
Q Consensus 366 ~A~~~~~~~-~~~p~ 379 (461)
+|.+.++.+ ...|+
T Consensus 92 ~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCC
Confidence 999988887 44453
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.04 E-value=0.95 Score=30.85 Aligned_cols=63 Identities=11% Similarity=0.179 Sum_probs=51.1
Q ss_pred ChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 038303 292 CGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356 (461)
Q Consensus 292 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 356 (461)
+.-+..+-++.+....+.|++......+++|.+.+++..|.++|+.++.+.+ +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 4556777788888888999999999999999999999999999999887444 33556777664
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.91 E-value=2.8 Score=43.71 Aligned_cols=158 Identities=7% Similarity=-0.029 Sum_probs=88.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHcCCChHHHHHHHhcC--CCCCCchhHHHHHHHhcccchhHHH
Q 038303 50 SLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSVLSACSSLVSHKLG 127 (461)
Q Consensus 50 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a 127 (461)
.++..+.+.+..+.+.++.... +.++..--.+..++...|++++|.++|++. ++..+...... ...
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~----------~~~- 884 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAV----------LRE- 884 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSS----------HHH-
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhh----------hcc-
Confidence 3455566667777666655444 334433334557788889999999999888 44333211100 000
Q ss_pred HHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChhhHHHHHhcCC----CCc----hhHHHHHHHHHHhcCChHHHHHHH
Q 038303 128 KAIHAHSLRNLN--ENNIILDNAILDFYIRCGSLASCGYLFVKMP----KRN----VVSWTTMIGGYAERGFCKEAVSVF 197 (461)
Q Consensus 128 ~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~----~~~~~~li~~~~~~~~~~~a~~~~ 197 (461)
+..+..... ..-..-|..++..+.+.+.++.+.++-.... +.+ ...|..+.+.+...|++++|...+
T Consensus 885 ---~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 885 ---FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp ---HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred ---cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 111111111 1122346667777777777776665543322 211 225788888888999999998888
Q ss_pred HHHHhcCCCCCChhhHHHHHHHhhccch
Q 038303 198 QEMEKTKEAEPNEATLVNVLSACSSISA 225 (461)
Q Consensus 198 ~~m~~~~~~~~~~~~~~~~l~~~~~~~~ 225 (461)
..+.... . -...+..++...+..+.
T Consensus 962 ~~~pd~~-~--r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 962 MVLSTTP-L--KKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp HHHHHSS-S--CHHHHHHHHHHHHHHCC
T ss_pred HhCCCHH-H--HHHHHHHHHHHHHhCCC
Confidence 8776533 2 23344455555554443
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.45 E-value=8.4 Score=40.18 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=12.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHc
Q 038303 251 AVINMYVKCGDVGIAIQVFNML 272 (461)
Q Consensus 251 ~li~~~~~~g~~~~a~~~~~~~ 272 (461)
.+..+|...|++++|.+.|.+.
T Consensus 847 l~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 847 LKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcCCHHHHHHHHHHH
Confidence 3444555556666666666544
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.45 E-value=4.7 Score=34.54 Aligned_cols=152 Identities=12% Similarity=0.077 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHcCCChHHHHH------
Q 038303 25 PHQKALEIHAHVIEYGHL-HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAID------ 97 (461)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~------ 97 (461)
.+++.+.-++.-.+.|-- --...|.++..-|.+.+++++|.+++... ...+.+.|+...|-+
T Consensus 12 ~~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llv 80 (312)
T 2wpv_A 12 KLAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLL 80 (312)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHH
Confidence 345555555555555521 13346777778888888999988887543 123344455544433
Q ss_pred -HHhcCCCCCCchhHHHHHHHhcccchhH-HHHHHHHHHHh----hc--CCCChhHHHHHHHHHHHcCChhhHHHHHhcC
Q 038303 98 -MFCGIDVKPNANTLVSVLSACSSLVSHK-LGKAIHAHSLR----NL--NENNIILDNAILDFYIRCGSLASCGYLFVKM 169 (461)
Q Consensus 98 -~~~~m~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 169 (461)
+|++.+.+++......++..+.....-+ .-.++++.+++ .| ..-++..+..+...|.+.|++.+|+..|-.-
T Consensus 81 ev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~ 160 (312)
T 2wpv_A 81 EVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG 160 (312)
T ss_dssp HHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC
Confidence 3333366777766666666654432111 12333333332 22 2236777888888999999999988877643
Q ss_pred CCCchhHHHHHHHHHHhc
Q 038303 170 PKRNVVSWTTMIGGYAER 187 (461)
Q Consensus 170 ~~~~~~~~~~li~~~~~~ 187 (461)
...+...+..++.-+.+.
T Consensus 161 ~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 161 THDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHh
Confidence 333555666665555544
No 248
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.21 E-value=8.3 Score=36.84 Aligned_cols=242 Identities=7% Similarity=-0.123 Sum_probs=117.8
Q ss_pred ChHHHHHHHHHHHhcCCCCCChh--hHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHH
Q 038303 189 FCKEAVSVFQEMEKTKEAEPNEA--TLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266 (461)
Q Consensus 189 ~~~~a~~~~~~m~~~~~~~~~~~--~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 266 (461)
+.+.|...+....+.....+... ....+.......+....+...+..... ...+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHHH
Confidence 67888888887765431222221 112222233344423444444444332 1233333344445556778888888
Q ss_pred HHHHHccCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcC
Q 038303 267 QVFNMLAYKD---KISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 343 (461)
Q Consensus 267 ~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 343 (461)
..|+.|.... ..-.-=+..++...|+.++|..+|+.+.+. . .-|..+. ..+.|..-.. .. ..
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~-~fYg~lA--a~~Lg~~~~~-------~~-~~ 370 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R-GFYPMVA--AQRIGEEYEL-------KI-DK 370 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C-SHHHHHH--HHHTTCCCCC-------CC-CC
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C-ChHHHHH--HHHcCCCCCC-------CC-CC
Confidence 8888887542 122223445667788888888888888642 1 2233332 1222211000 00 00
Q ss_pred CCCC-cc-----hHHHHHHHHhhcCCHHHHHHHHHhCCCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCC---CCh
Q 038303 344 IVPQ-MQ-----HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKG---VSV 414 (461)
Q Consensus 344 ~~~~-~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~ 414 (461)
..+. .. .-..-+..+...|....|...+.......+......+.......|....++........... .-+
T Consensus 371 ~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P 450 (618)
T 1qsa_A 371 APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFP 450 (618)
T ss_dssp CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSC
T ss_pred CChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCC
Confidence 0110 00 11123456778899999988887762122323233343445667777777655544332110 012
Q ss_pred hHHHHHHHHHhccCChhhHHHHHHHHHHcCCccc
Q 038303 415 GTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448 (461)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 448 (461)
..|..++..+.+.-.++.++-.---..+.+..|.
T Consensus 451 ~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~ 484 (618)
T 1qsa_A 451 LAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPK 484 (618)
T ss_dssp CTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTT
T ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCC
Confidence 2355555555555555554433333345555554
No 249
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.47 E-value=2.6 Score=30.54 Aligned_cols=63 Identities=11% Similarity=0.179 Sum_probs=51.3
Q ss_pred ChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 038303 292 CGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVD 356 (461)
Q Consensus 292 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 356 (461)
+.-+..+-++.+....+.|++......+++|.+.+++..|.++|+.++.+.| +...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 4445677777888888999999999999999999999999999999988443 44666777764
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.26 E-value=2.1 Score=32.46 Aligned_cols=122 Identities=12% Similarity=0.056 Sum_probs=63.5
Q ss_pred CCCCCH--hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCc-------chHHHHHHHHhhcCCHHHHHHHHHhC---
Q 038303 307 AVFPDD--VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQM-------QHYACVVDMYGRAGLLEEAEAFIREM--- 374 (461)
Q Consensus 307 g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~--- 374 (461)
|..|.. .++-.-++.+...|.++.|+-+.+.+....+..|+. .++..+.+++...|++..|...|++.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 444433 234444566777778888777777655533333442 24455667777777777777777764
Q ss_pred -CCCchh-hHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHH
Q 038303 375 -PIEAEW-SVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEI 440 (461)
Q Consensus 375 -~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 440 (461)
..-+.. .+...+ .. ...... ....+.+...-..+..+|.+.|++++|+.+++.+
T Consensus 93 ~k~l~k~~s~~~~~-~~--~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 93 KKALSKTSKVRPST-GN--SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHCC--------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHhcCCCccccc-cc--cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 110111 000000 00 000000 0011234467778999999999999999998654
No 251
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.12 E-value=17 Score=36.54 Aligned_cols=251 Identities=8% Similarity=-0.042 Sum_probs=136.7
Q ss_pred HHHHcCChhhHHHHHhcCCC----Cc--hhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------CCChhhHHHHHHH
Q 038303 152 FYIRCGSLASCGYLFVKMPK----RN--VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEA------EPNEATLVNVLSA 219 (461)
Q Consensus 152 ~~~~~g~~~~a~~~~~~~~~----~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~------~~~~~~~~~~l~~ 219 (461)
+....|+.++++.+++.... .+ +..=..+.-+....|..+++..++......... .+....-..+--+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45677888999999988764 12 122233444566677667788887776654210 0111111122112
Q ss_pred --hhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccC-CChhhHH--HHHHHHHhcCChH
Q 038303 220 --CSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDKISWS--TVISGLAMNGCGR 294 (461)
Q Consensus 220 --~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~--~l~~~~~~~~~~~ 294 (461)
+.-.++. ++...+..+.............-+|...+.-.|+-+....++..+.+ .+..... .+.-++...|+.+
T Consensus 463 la~~GS~~e-ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANI-EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 2222333 33444444333111100111222344445567887777777776543 2333333 3334455789999
Q ss_pred HHHHHHHHHHhcCCCCCH-hHHH---HHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHH
Q 038303 295 QALQLFSLMIINAVFPDD-VTFI---ALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAF 370 (461)
Q Consensus 295 ~a~~~~~~m~~~g~~p~~-~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 370 (461)
.+..+++.+... .+. .-|. .+.-+|+..|+.....++++.+..+ ...++.-...+.-++...|+.+.+.++
T Consensus 542 ~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 542 LADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 999999988763 233 2333 3344677899988888899888772 223343333444455557777777888
Q ss_pred HHhC--CCCchhhHHHHHHHHHHhcCCh-HHHHHHHHHHhh
Q 038303 371 IREM--PIEAEWSVWGALLNACRIHRND-EMFDRIRQDLVN 408 (461)
Q Consensus 371 ~~~~--~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 408 (461)
++.+ ...|.+..-..+.-+....|.. ..+...+..+..
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 8766 3345554444444444444443 566777777654
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.99 E-value=3.3 Score=28.26 Aligned_cols=48 Identities=21% Similarity=0.207 Sum_probs=37.7
Q ss_pred CCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHH
Q 038303 375 PIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSN 422 (461)
Q Consensus 375 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 422 (461)
..-|++....+.+++|.+.+++..|.++++-++....+...+|..+++
T Consensus 40 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 40 DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 566888888888999999999999999998888765544556776664
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.96 E-value=8.9 Score=33.13 Aligned_cols=152 Identities=13% Similarity=0.086 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHhCCC----ccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHcCCChHHHHHH---
Q 038303 26 HQKALEIHAHVIEYGHL----HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDM--- 98 (461)
Q Consensus 26 ~~~a~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~--- 98 (461)
+++.+.=++.-++.|-- --..+|.++..-|.+.+++++|.+++-+- ...+.+.|+...|-++
T Consensus 12 ~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~l 80 (336)
T 3lpz_A 12 IERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVL 80 (336)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHH
Confidence 44444444444554521 12236667777788889999998887543 1234445555444333
Q ss_pred ----HhcCCCCCCchhHHHHHHHhcccchhH-HHHHHHHHHH----hhc--CCCChhHHHHHHHHHHHcCChhhHHHHHh
Q 038303 99 ----FCGIDVKPNANTLVSVLSACSSLVSHK-LGKAIHAHSL----RNL--NENNIILDNAILDFYIRCGSLASCGYLFV 167 (461)
Q Consensus 99 ----~~~m~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 167 (461)
|++.++++|.....-++..+.....-+ .-..+.+.++ +.| ..-++.....+...|.+.+++.+|+..|-
T Consensus 81 lvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 81 LVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 333367777766666666655443211 1122333333 223 33456677777888888888888887774
Q ss_pred cCCCCchhHHHHHHHHHHhcC
Q 038303 168 KMPKRNVVSWTTMIGGYAERG 188 (461)
Q Consensus 168 ~~~~~~~~~~~~li~~~~~~~ 188 (461)
.-.++....+..++.-+.+.+
T Consensus 161 lg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 161 LGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp TSCTTHHHHHHHHHHHHHHTS
T ss_pred hcCCchHHHHHHHHHHHHHhc
Confidence 323233355555554444433
No 254
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.66 E-value=11 Score=36.90 Aligned_cols=54 Identities=9% Similarity=-0.031 Sum_probs=42.8
Q ss_pred HHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCC
Q 038303 116 SACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMP 170 (461)
Q Consensus 116 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 170 (461)
+.|...|+++.|.++-++.+...+. +-.+|..|..+|.+.|+++.|+-.++.++
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3456678888888888887776444 67888888888999999988888888876
No 255
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.52 E-value=5.5 Score=33.05 Aligned_cols=54 Identities=17% Similarity=0.044 Sum_probs=33.5
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHh
Q 038303 286 GLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340 (461)
Q Consensus 286 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 340 (461)
.+.+.|++++|++....-++... -|...-..+++.+|-.|++++|.+-++...+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34566677777766666666432 2445555666667777777777766666554
No 256
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.41 E-value=11 Score=32.22 Aligned_cols=169 Identities=7% Similarity=-0.030 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHcCChhhHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHH----HHHHHhcCCCCCChhhHHHHHHHh
Q 038303 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSV----FQEMEKTKEAEPNEATLVNVLSAC 220 (461)
Q Consensus 145 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~~~~~~~~~~~l~~~ 220 (461)
.|.++..-|.+.+++++|++++..- ...+.+.|+...|.++ ++-..+.+ .+++......++..+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~-~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAE-VKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTT-CCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Confidence 3455666677778888877764432 2345566766655554 33334445 777777766666665
Q ss_pred hccc-----hhhhHHHHHHHHHhhcC-CCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhc---C
Q 038303 221 SSIS-----ALSFGKYVHSYISTRYD-LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMN---G 291 (461)
Q Consensus 221 ~~~~-----~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~---~ 291 (461)
.... +..-..+....-.+..+ -.-++.....+...|.+.|++.+|+..|-.-...+...+..++.-+... |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 4422 12222333333333111 2235566778888888888888888766522222344444443333322 2
Q ss_pred ChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHh
Q 038303 292 CGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340 (461)
Q Consensus 292 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 340 (461)
...++ +... ...+--|...++...|..+|+...+
T Consensus 183 ~~~e~--------------dlf~-~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTV--------------AEFF-SRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHH--------------HHHH-HHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CcchH--------------HHHH-HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 22221 1111 1112235567888888888887754
No 257
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.18 E-value=14 Score=32.97 Aligned_cols=165 Identities=10% Similarity=0.002 Sum_probs=99.0
Q ss_pred hhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcc---hHHHHHHHHHHhcC-CHHHHHHHHHHccC---CChhhH--
Q 038303 210 EATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSN---LVGNAVINMYVKCG-DVGIAIQVFNMLAY---KDKISW-- 280 (461)
Q Consensus 210 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g-~~~~a~~~~~~~~~---~~~~~~-- 280 (461)
......+...|.+.|+.++...++.....-.+.-+-. .....++..+.... ..+.-.++..+..+ ..-.+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777888888888888887775533333322 23456666666543 33333444433331 122233
Q ss_pred ----HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-----hHHHHHHHHHHcCCChHHHHHHHHHhHhhcC-CCCCcch
Q 038303 281 ----STVISGLAMNGCGRQALQLFSLMIINAVFPDD-----VTFIALISACSHGGLVDQGLILFKAMSTVYE-IVPQMQH 350 (461)
Q Consensus 281 ----~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ 350 (461)
..++..|...|++.+|.+++.++.+.--..|. ..|..-++.|...+++.++...+.......+ +.+++.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 24677888899999998888888764222232 3355556678888999999888887765322 2233333
Q ss_pred HHHH----HHHHh-hcCCHHHHHHHHHhC
Q 038303 351 YACV----VDMYG-RAGLLEEAEAFIREM 374 (461)
Q Consensus 351 ~~~l----~~~~~-~~g~~~~A~~~~~~~ 374 (461)
...+ ...+. ..+++..|...|-+.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 2221 22344 678888888877655
No 258
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.09 E-value=12 Score=32.29 Aligned_cols=168 Identities=9% Similarity=0.024 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHcCChhhHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHH----HHHHhcCCCCCChhhHHHHHHHh
Q 038303 145 LDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVF----QEMEKTKEAEPNEATLVNVLSAC 220 (461)
Q Consensus 145 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~~~~~~~~~~~l~~~ 220 (461)
+|.++..-|.+.+++++|++++-.- ...+.+.|+...|.++- +-..+.+ +++|......++..+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~-~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAG-QRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Confidence 3455666677888888887764332 23455556655554443 3334444 677776666666665
Q ss_pred hccchh-----hhHHHHHHHHHhhcC--CCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCCh
Q 038303 221 SSISAL-----SFGKYVHSYISTRYD--LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCG 293 (461)
Q Consensus 221 ~~~~~~-----~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 293 (461)
.....- .-..+...+-.+ .| -.-++.....+...|.+.+++.+|+..|-.-..+....|..++.-+...+..
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~-~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~ 183 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKK-FGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDES 183 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHH-HSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCG
T ss_pred HhCCCCCcHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCC
Confidence 544321 112222233333 23 2345566677888888999999888877422222224554444333333321
Q ss_pred HHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHh
Q 038303 294 RQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340 (461)
Q Consensus 294 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 340 (461)
.++ +...- ..+--|...++...|..+++...+
T Consensus 184 ~e~--------------dlfia-RaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 184 HTA--------------PLYCA-RAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GGH--------------HHHHH-HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccH--------------HHHHH-HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 111 11111 222245667888888887776654
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.05 E-value=6.4 Score=28.99 Aligned_cols=73 Identities=8% Similarity=-0.066 Sum_probs=48.7
Q ss_pred CCCcchHHHHHHHHhhcCCHH---HHHHHHHhC-CCCc--hhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHH
Q 038303 345 VPQMQHYACVVDMYGRAGLLE---EAEAFIREM-PIEA--EWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTF 417 (461)
Q Consensus 345 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 417 (461)
.|+..+--.+..+++++...+ +++.++++. ...| .......+.-++.+.|+++.|.++.+.+.+..|.+..+-
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 566666666777777776654 566666666 2223 222334455558888888888888888888888876443
No 260
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.93 E-value=7 Score=34.92 Aligned_cols=57 Identities=14% Similarity=0.052 Sum_probs=31.2
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC
Q 038303 316 IALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM 374 (461)
Q Consensus 316 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 374 (461)
..++..+...|++++|...+..+.. ..+-+...+..++.++.+.|+..+|++.|++.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444445556666666655555544 23334455566666666666666666555543
No 261
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=87.38 E-value=14 Score=32.29 Aligned_cols=64 Identities=16% Similarity=0.268 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHccCCC---hhhHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCCCCHh
Q 038303 250 NAVINMYVKCGDVGIAIQVFNMLAYKD---KISWSTVISGLAMNGC--GRQALQLFSLMIINAVFPDDV 313 (461)
Q Consensus 250 ~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~ 313 (461)
+.++.-|...|+.++|...++++..|. ......+..++-+.++ .+....++..+...|+-+...
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 668888999999999999999998773 2344555555555433 355777888887776654443
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.10 E-value=3.2 Score=34.41 Aligned_cols=112 Identities=14% Similarity=0.149 Sum_probs=77.9
Q ss_pred HHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCch----hhHHHHHHHHHHhcC
Q 038303 320 SACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE----WSVWGALLNACRIHR 394 (461)
Q Consensus 320 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~ 394 (461)
....+.|++++|+.....-.+ .-+-|...-..|++.+|-.|+++.|.+-++.. ...|+ ...|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-----
Confidence 456788999999999888777 55677888889999999999999999988877 33443 3345555544
Q ss_pred ChHHHHHHHHHHhhcC------CCChhHHHHHHHHHh--ccCChhhHHHHHHHHHHc
Q 038303 395 NDEMFDRIRQDLVNKK------GVSVGTFALMSNTFA--GADRWEDTNKIRDEIRRM 443 (461)
Q Consensus 395 ~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~ 443 (461)
+..-.++..+. .........++.+.. ..|+.++|.++-++..+.
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222333311 122335556666655 469999999999988665
No 263
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=86.93 E-value=8.1 Score=30.41 Aligned_cols=52 Identities=6% Similarity=-0.088 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHhh--cCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcCCcc
Q 038303 396 DEMFDRIRQDLVN--KKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447 (461)
Q Consensus 396 ~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 447 (461)
...+..+|..+.. .+..-+..|...+..+...|++++|.++++.=.+.+.+|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3344444444443 112233344444444444444444444444444444433
No 264
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.07 E-value=8 Score=28.07 Aligned_cols=51 Identities=20% Similarity=0.188 Sum_probs=41.4
Q ss_pred hCCCCchhhHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 038303 373 EMPIEAEWSVWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNT 423 (461)
Q Consensus 373 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 423 (461)
.+..-|++....+.+++|.+.+|+..|.++++-++....+...+|..+++-
T Consensus 81 ~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqE 131 (152)
T 2y69_E 81 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQE 131 (152)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 346679999999999999999999999999999988665556677776643
No 265
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=85.02 E-value=10 Score=31.64 Aligned_cols=53 Identities=11% Similarity=-0.044 Sum_probs=28.1
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhCCCccHH---HHHHHHHHHHhcCCHHHHHHHHhhC
Q 038303 15 QALKACSLAHPHQKALEIHAHVIEYGHLHDIF---IQNSLLHFYVTVKDIFSAHQIFNSV 71 (461)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~ 71 (461)
..+...++.|+.+.... +.+.|..++.. .-.+.+...+..|+.+-+..+++.-
T Consensus 7 ~~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 62 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQ----LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62 (285)
T ss_dssp HHHHHHHHTTCHHHHHH----HHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred hHHHHHHHcCCHHHHHH----HHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 34455566777654443 34445443321 1123455556677777777666654
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.75 E-value=7.4 Score=35.32 Aligned_cols=60 Identities=10% Similarity=-0.063 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--HhHHHHHHHHHHcCCChHHHHHHHHHhH
Q 038303 280 WSTVISGLAMNGCGRQALQLFSLMIINAVFPD--DVTFIALISACSHGGLVDQGLILFKAMS 339 (461)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 339 (461)
+..+...|.+.|+++.|.+.+.++......+. ...+-.+++.+...+++..+...++++.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33344444444444444444444443222211 1333444444444455555544444443
No 267
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=82.94 E-value=19 Score=29.85 Aligned_cols=115 Identities=13% Similarity=0.038 Sum_probs=59.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCce----eHHHHHHHHHcCCChHHHHHHHhcCCCCCCc---hhHHHHHHHhcccc
Q 038303 50 SLLHFYVTVKDIFSAHQIFNSVVFPDVV----SWTTIISGLSKCGFHKEAIDMFCGIDVKPNA---NTLVSVLSACSSLV 122 (461)
Q Consensus 50 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~p~~---~~~~~ll~~~~~~~ 122 (461)
+.+...++.|+.+.+..+++.-..++.. .+ +.+...+..|+.+-+..+++. |..|+. .-.+ .+...+..|
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t-~L~~A~~~~ 83 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSREDIVELLLRH-GADPVLRKKNGAT-PFLLAAIAG 83 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCC-CHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCC-HHHHHHHHT
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCC-cHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCC-HHHHHHHcC
Confidence 4455667889998888888876433322 22 334445566777665555544 333322 1122 223333445
Q ss_pred hhHHHHHHHHHHHhhcCCCChhH--HHHHHHHHHHcCChhhHHHHHhcCCC
Q 038303 123 SHKLGKAIHAHSLRNLNENNIIL--DNAILDFYIRCGSLASCGYLFVKMPK 171 (461)
Q Consensus 123 ~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~ 171 (461)
+.+ +++.+.+.|..++... -.+.+...+..|+.+-...+++.-..
T Consensus 84 ~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 130 (285)
T 1wdy_A 84 SVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN 130 (285)
T ss_dssp CHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCC
Confidence 544 4444455555443221 12234445667777776666665443
No 268
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=82.56 E-value=12 Score=27.20 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=15.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCh
Q 038303 386 LLNACRIHRNDEMFDRIRQDLVNKKGVSV 414 (461)
Q Consensus 386 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 414 (461)
+.-++.+.|+++.|.++.+.+.+..|.+.
T Consensus 84 LAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 84 LTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 33335555555555555555555555554
No 269
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=82.41 E-value=17 Score=28.80 Aligned_cols=47 Identities=9% Similarity=0.028 Sum_probs=19.0
Q ss_pred ChhHHHHHHHHHHHcCChhhHHHHHhcCCCCchhHHHHHHHHHHhcC
Q 038303 142 NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERG 188 (461)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 188 (461)
+..+-...+..+.+.|..+....+.+.+..++...-...+.++.+.+
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~ 78 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIG 78 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhC
Confidence 44444444444444444333333333333344333333333443333
No 270
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=81.25 E-value=15 Score=27.47 Aligned_cols=50 Identities=6% Similarity=0.058 Sum_probs=37.1
Q ss_pred HHHHHHHHhhc--CCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcCCccc
Q 038303 399 FDRIRQDLVNK--KGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKK 448 (461)
Q Consensus 399 a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 448 (461)
+..+|..+.+. ...-+..|...+..+...|++++|.++++.-.+.+.+|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 67777777763 345566778888888888888888888888777777664
No 271
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.08 E-value=25 Score=31.79 Aligned_cols=96 Identities=9% Similarity=-0.003 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHhHhhc-CCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC----CCCchhhHHHH--
Q 038303 313 VTFIALISACSHGGLVDQGLILFKAMSTVY-EIVPQMQHYACVVDMYGRAGLLEEAEAFIREM----PIEAEWSVWGA-- 385 (461)
Q Consensus 313 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~-- 385 (461)
.+...+...|.+.|+++.|.+.+.++.... +...-...+-.+++.+...+++..+...+.++ ...++....+.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 356667777778888888888887776622 11222456666777777778888877777766 11222221111
Q ss_pred HHHH--HHhcCChHHHHHHHHHHhh
Q 038303 386 LLNA--CRIHRNDEMFDRIRQDLVN 408 (461)
Q Consensus 386 l~~~--~~~~~~~~~a~~~~~~~~~ 408 (461)
.-.+ +...+++..|-..|-....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1111 3456777777766666554
No 272
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=81.01 E-value=30 Score=30.82 Aligned_cols=91 Identities=7% Similarity=0.003 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcCChhhHHHHHhcCCC--------CchhHHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCCCChhhH---
Q 038303 146 DNAILDFYIRCGSLASCGYLFVKMPK--------RNVVSWTTMIGGYAER-GFCKEAVSVFQEMEKTKEAEPNEATL--- 213 (461)
Q Consensus 146 ~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~--- 213 (461)
...|...|.+.|+.++...++..... ...-.-..++..+... +..+.-.++..+..+. ...+..+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~--a~~~~r~flr~ 99 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEW--AKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH--HHHTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 35588889999999998888887764 1222344555555443 2233333333333332 11111222
Q ss_pred ---HHHHHHhhccchhhhHHHHHHHHHh
Q 038303 214 ---VNVLSACSSISALSFGKYVHSYIST 238 (461)
Q Consensus 214 ---~~~l~~~~~~~~~~~a~~~~~~~~~ 238 (461)
.-+...|...|++.+|..++..+.+
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~ 127 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLR 127 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 1334445555555555555555544
No 273
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=80.98 E-value=19 Score=28.47 Aligned_cols=48 Identities=15% Similarity=0.045 Sum_probs=21.1
Q ss_pred cchHHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCC
Q 038303 245 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292 (461)
Q Consensus 245 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 292 (461)
+..+-...+.++.+.++.+....+.+.+..++...-...+.++.+.+.
T Consensus 94 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 333444444444444444333333333334444444444444444444
No 274
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=80.75 E-value=15 Score=27.10 Aligned_cols=70 Identities=6% Similarity=-0.059 Sum_probs=36.5
Q ss_pred CCCHhHHHHHHHHHHcCCC---hHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCch
Q 038303 309 FPDDVTFIALISACSHGGL---VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE 379 (461)
Q Consensus 309 ~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 379 (461)
.|+..+--.+..++.++.+ ..+++.+++.+.+ .+-.-.....-.|.-++.+.|++++|.++.+.+ ...|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~-~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH-HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4555554445555555443 3355666666655 221122333444555666667777776666665 44443
No 275
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=79.98 E-value=20 Score=28.07 Aligned_cols=43 Identities=14% Similarity=0.030 Sum_probs=17.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCC
Q 038303 250 NAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGC 292 (461)
Q Consensus 250 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 292 (461)
...+.++.+.++.+....+...+..++...-...+.++.+.++
T Consensus 94 ~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 94 QSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp HHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 3344444444443333333333333444444444444444443
No 276
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=79.82 E-value=8 Score=33.07 Aligned_cols=64 Identities=17% Similarity=0.277 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHccCCC---hhhHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCCCCHh
Q 038303 250 NAVINMYVKCGDVGIAIQVFNMLAYKD---KISWSTVISGLAMNGC--GRQALQLFSLMIINAVFPDDV 313 (461)
Q Consensus 250 ~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~ 313 (461)
..++.-|...|+.++|...++++..|. ...+..+..++-+.++ .+....++..+.+.|+-+...
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 567888888999999999999998762 2344455555555433 455677888887776654433
No 277
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=78.85 E-value=32 Score=30.93 Aligned_cols=231 Identities=13% Similarity=0.117 Sum_probs=102.7
Q ss_pred HHHHHHcCChhhHHHHHhcCCCC---chhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhh--HHHHHHHhhccc
Q 038303 150 LDFYIRCGSLASCGYLFVKMPKR---NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEAT--LVNVLSACSSIS 224 (461)
Q Consensus 150 ~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~~~l~~~~~~~ 224 (461)
+...++.|+.+.+..+++.-... +..-++. +...+..|+.+-+. .+.+.| ..++... -.+.+...+..|
T Consensus 117 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v~----~Ll~~g-~~~~~~~~~g~t~L~~A~~~~ 190 (437)
T 1n11_A 117 LHIAAREGHVETVLALLEKEASQACMTKKGFTP-LHVAAKYGKVRVAE----LLLERD-AHPNAAGKNGLTPLHVAVHHN 190 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHHHHH----HHHHTT-CCTTCCCSSCCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCH-HHHHHHcCCHHHHH----HHHhCC-CCCCCCCCCCCCHHHHHHHcC
Confidence 34445566666666666554321 1111222 33345556655433 333333 3333211 111233333445
Q ss_pred hhhhHHHHHHHHHhhcCCCCcchH--HHHHHHHHHhcCCHHHHHHHHHHccCC---ChhhHHHHHHHHHhcCChHHHHHH
Q 038303 225 ALSFGKYVHSYISTRYDLSVSNLV--GNAVINMYVKCGDVGIAIQVFNMLAYK---DKISWSTVISGLAMNGCGRQALQL 299 (461)
Q Consensus 225 ~~~~a~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~ 299 (461)
+.+.+ +.+.+ .|..++... ....+...+..|+.+-+..+++.-... +....+.+. ..+..|..+-+
T Consensus 191 ~~~~v----~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~-~A~~~g~~~~v--- 261 (437)
T 1n11_A 191 NLDIV----KLLLP-RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH-LAAQEGHAEMV--- 261 (437)
T ss_dssp CHHHH----HHHGG-GTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH-HHHHTTCHHHH---
T ss_pred CHHHH----HHHHh-CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH-HHHHCCCHHHH---
Confidence 44433 33333 344433221 122344456778887777777654332 222233333 34456665443
Q ss_pred HHHHHhcCCCCCH---hHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCc---chHHHHHHHHhhcCCHHHHHHHHHh
Q 038303 300 FSLMIINAVFPDD---VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQM---QHYACVVDMYGRAGLLEEAEAFIRE 373 (461)
Q Consensus 300 ~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~ 373 (461)
+.+.+.|..++. ...+ .+...+..|+.+-+..+++ .|..++. .-.+. +...+..|+.+-+.-+++.
T Consensus 262 -~~Ll~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~-----~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~ 333 (437)
T 1n11_A 262 -ALLLSKQANGNLGNKSGLT-PLHLVAQEGHVPVADVLIK-----HGVMVDATTRMGYTP-LHVASHYGNIKLVKFLLQH 333 (437)
T ss_dssp -HHHHTTTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHH-----HTCCTTCCCSSCCCH-HHHHHHSSCSHHHHHHHHT
T ss_pred -HHHHhcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHh-----CCccCCCCCCCCCCH-HHHHHHcCcHHHHHHHHhc
Confidence 444445544432 2222 2333445566655444443 3433332 22222 3344567777766666654
Q ss_pred CCCCc---hhhHHHHHHHHHHhcCChHHHHHHHHH
Q 038303 374 MPIEA---EWSVWGALLNACRIHRNDEMFDRIRQD 405 (461)
Q Consensus 374 ~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~ 405 (461)
- ..+ +..-.+.| ......|+.+-+..+++.
T Consensus 334 g-ad~n~~~~~g~t~L-~~A~~~g~~~iv~~Ll~~ 366 (437)
T 1n11_A 334 Q-ADVNAKTKLGYSPL-HQAAQQGHTDIVTLLLKN 366 (437)
T ss_dssp T-CCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHT
T ss_pred C-CCCCCCCCCCCCHH-HHHHHCChHHHHHHHHHC
Confidence 3 222 22222333 333456777766666654
No 278
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=78.02 E-value=17 Score=26.34 Aligned_cols=74 Identities=5% Similarity=-0.077 Sum_probs=50.7
Q ss_pred CCCCCHhHHHHHHHHHHcCCC---hHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC-CCCchhh
Q 038303 307 AVFPDDVTFIALISACSHGGL---VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS 381 (461)
Q Consensus 307 g~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 381 (461)
+-.|+..|--.+..++.++.+ ..+++.+++.+.+ .+-.-....+-.|.-++.+.|++++|.++.+.+ ...|+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~-~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 445666665566666666554 4568888888877 332123555666778888999999999999888 6666544
No 279
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=77.52 E-value=21 Score=27.06 Aligned_cols=49 Identities=8% Similarity=0.015 Sum_probs=23.7
Q ss_pred HHHHHHHHhhc--CCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcCCcc
Q 038303 399 FDRIRQDLVNK--KGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKK 447 (461)
Q Consensus 399 a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 447 (461)
+..+|..+... ...-+..|...+..+...|++.+|.++++.-.+.+.+|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 33444444432 23334445555555555555555555555555554444
No 280
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=75.10 E-value=17 Score=24.74 Aligned_cols=85 Identities=9% Similarity=0.016 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038303 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305 (461)
Q Consensus 226 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 305 (461)
.++|..|-+.+.. .+. ...+--+-+..+...|++++|..+.+...-||...|-++-. .+.|-.+++..-+.++..
T Consensus 22 HqEA~tIAdwL~~-~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 22 HEEALCIAEWLER-LGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp HHHHHHHHHHHHH-TTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh-CCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 4555555555544 222 22222223445667888888888888888888888877654 466777777777767766
Q ss_pred cCCCCCHhHHH
Q 038303 306 NAVFPDDVTFI 316 (461)
Q Consensus 306 ~g~~p~~~~~~ 316 (461)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 64 34444443
No 281
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=74.08 E-value=18 Score=24.64 Aligned_cols=85 Identities=19% Similarity=0.185 Sum_probs=50.5
Q ss_pred hhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038303 226 LSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFSLMII 305 (461)
Q Consensus 226 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 305 (461)
.++|..|-+.+.. .+. ...+--+-+..+...|++++|..+.+...-||...|-++-. .+.|-.+++..-+.++..
T Consensus 23 HqEA~tIAdwL~~-~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 23 HEEANCIAEWLHL-KGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp HHHHHHHHHHHHH-TTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh-CCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 4555555555544 222 22222223445667788888888888888888888877654 356777777776666666
Q ss_pred cCCCCCHhHHH
Q 038303 306 NAVFPDDVTFI 316 (461)
Q Consensus 306 ~g~~p~~~~~~ 316 (461)
.| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 54 33444443
No 282
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=73.97 E-value=18 Score=24.59 Aligned_cols=86 Identities=10% Similarity=0.020 Sum_probs=62.1
Q ss_pred chhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038303 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME 201 (461)
Q Consensus 122 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 201 (461)
...++|..+-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|- -.+.|-.+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHH
Confidence 356777777777766654 2233233345677899999999999999999999998875 457888888888888887
Q ss_pred hcCCCCCChhhH
Q 038303 202 KTKEAEPNEATL 213 (461)
Q Consensus 202 ~~~~~~~~~~~~ 213 (461)
..| .|....|
T Consensus 96 ~sg--~p~~q~F 105 (115)
T 2uwj_G 96 GSS--DPALADF 105 (115)
T ss_dssp TCS--SHHHHHH
T ss_pred hCC--CHHHHHH
Confidence 764 3444333
No 283
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=73.12 E-value=19 Score=24.51 Aligned_cols=79 Identities=13% Similarity=0.082 Sum_probs=58.8
Q ss_pred chhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038303 122 VSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME 201 (461)
Q Consensus 122 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 201 (461)
...++|..+-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|- -.+.|-.+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALC--EYRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHH--HHHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHH
Confidence 356777777777766654 2233233345677899999999999999999999998875 457788888888888887
Q ss_pred hcC
Q 038303 202 KTK 204 (461)
Q Consensus 202 ~~~ 204 (461)
..|
T Consensus 97 ~sg 99 (116)
T 2p58_C 97 RSQ 99 (116)
T ss_dssp TCC
T ss_pred hCC
Confidence 764
No 284
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=72.66 E-value=32 Score=26.81 Aligned_cols=153 Identities=10% Similarity=-0.007 Sum_probs=85.0
Q ss_pred ChhHHHHHHHHHHHcCChhhHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhh
Q 038303 142 NIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACS 221 (461)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~ 221 (461)
+..+....+..+.+.|..+....+.+.+..++...-...+.++...++.+. ...+.++.. .++...-...+.++.
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~----d~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERA-VEPLIKALK----DEDGWVRQSAAVALG 101 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT----CSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc----CCCHHHHHHHHHHHH
Confidence 444445555555566655555555555555666555556666666665433 333333332 245555556666666
Q ss_pred ccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 038303 222 SISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQALQLFS 301 (461)
Q Consensus 222 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 301 (461)
..++.+....+...+ . .++..+-...+.++.+.++.+....+...+..++...-...+.++.+.|.. ++...+.
T Consensus 102 ~~~~~~~~~~L~~~l-~----d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~-~~~~~L~ 175 (201)
T 3ltj_A 102 QIGDERAVEPLIKAL-K----DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGGE-RVRAAME 175 (201)
T ss_dssp HHCCGGGHHHHHHHT-T----CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSH-HHHHHHH
T ss_pred HhCcHHHHHHHHHHH-c----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCch-hHHHHHH
Confidence 666544333333322 2 345556666777777777755555555555566666666667777776653 4555555
Q ss_pred HHHh
Q 038303 302 LMII 305 (461)
Q Consensus 302 ~m~~ 305 (461)
.+.+
T Consensus 176 ~~l~ 179 (201)
T 3ltj_A 176 KLAE 179 (201)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
No 285
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=72.52 E-value=35 Score=27.31 Aligned_cols=147 Identities=11% Similarity=0.001 Sum_probs=79.4
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHhCCCccHHH--HHHHHHHHHhcCCHHHHHHHHhhCCCCCc---eeHHHHHHHHHcCCC
Q 038303 17 LKACSLAHPHQKALEIHAHVIEYGHLHDIFI--QNSLLHFYVTVKDIFSAHQIFNSVVFPDV---VSWTTIISGLSKCGF 91 (461)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~ 91 (461)
+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+..+++.-..++. ..++ .+...+..|+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~ 91 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT-AAHLACEHRS 91 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC-HHHHHHHcCC
Confidence 4556778999888888888777776554321 12345556678888887777776543322 2222 3334456777
Q ss_pred hHHHHHHHhcC---CCCCC---chhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhH---HHHHHHHHHHcCChhhH
Q 038303 92 HKEAIDMFCGI---DVKPN---ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL---DNAILDFYIRCGSLASC 162 (461)
Q Consensus 92 ~~~a~~~~~~m---~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a 162 (461)
.+-...+++.. +..++ ....+ .+...+..|+.+ +++.+.+.|..++... ..+.+...++.|+.+-+
T Consensus 92 ~~~~~~Ll~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v 166 (241)
T 1k1a_A 92 PTCLRALLDSAAPGTLDLEARNYDGLT-ALHVAVNTECQE----TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV 166 (241)
T ss_dssp HHHHHHHHHHSCTTSCCTTCCCTTSCC-HHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCCCccccccccCcCCCc-HHHHHHHcCCHH----HHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHH
Confidence 77666666553 11221 11112 222333344443 3444455555443321 22344555666777766
Q ss_pred HHHHhcC
Q 038303 163 GYLFVKM 169 (461)
Q Consensus 163 ~~~~~~~ 169 (461)
..+++.-
T Consensus 167 ~~Ll~~g 173 (241)
T 1k1a_A 167 QLLLQHG 173 (241)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 6666653
No 286
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=71.70 E-value=31 Score=27.68 Aligned_cols=207 Identities=12% Similarity=-0.007 Sum_probs=102.4
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHhCCCccHHH--HHHHHHHHHhcCCHHHHHHHHhhCCCC---CceeHHHHHHHHHcCC
Q 038303 16 ALKACSLAHPHQKALEIHAHVIEYGHLHDIFI--QNSLLHFYVTVKDIFSAHQIFNSVVFP---DVVSWTTIISGLSKCG 90 (461)
Q Consensus 16 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~ 90 (461)
.+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+++.-..+ +....+ .+...+..|
T Consensus 14 ~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~ 88 (237)
T 3b7b_A 14 PLHAAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGST-CLHLAAKKG 88 (237)
T ss_dssp HHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCC-HHHHHHHTT
T ss_pred HHHHHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCc-HHHHHHHcC
Confidence 345556778765 4555556665544321 123455566788888888888765332 222223 333445667
Q ss_pred ChHHHHHHHhcCCCCCC---chhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhH--HHHHHHHHHHcCChhhHHHH
Q 038303 91 FHKEAIDMFCGIDVKPN---ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL--DNAILDFYIRCGSLASCGYL 165 (461)
Q Consensus 91 ~~~~a~~~~~~m~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~ 165 (461)
+.+-+..+++.-...++ ..-.+ .+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+
T Consensus 89 ~~~~~~~Ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 163 (237)
T 3b7b_A 89 HYEVVQYLLSNGQMDVNCQDDGGWT-PMIWATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163 (237)
T ss_dssp CHHHHHHHHTTTCCCTTCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred CHHHHHHHHhCCCCCcccCCCCCCC-HHHHHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHH
Confidence 77666666654312221 21122 233334445554 4444555665543321 12344555667887777777
Q ss_pred HhcCCCCc---hhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhh--HHHHHHHhhccchhhhHHHHHHHHHh
Q 038303 166 FVKMPKRN---VVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEAT--LVNVLSACSSISALSFGKYVHSYIST 238 (461)
Q Consensus 166 ~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~~~l~~~~~~~~~~~a~~~~~~~~~ 238 (461)
++.-..++ ..-.+ .+...++.|+.+-+ +.+.+.| ..++... -.+-+......++...+.++.+.+.+
T Consensus 164 l~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v----~~Ll~~g-ad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 164 LAAKCDLHAVNIHGDS-PLHIAARENRYDCV----VLFLSRD-SDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HTTTCCTTCCCTTCCC-HHHHHHHTTCHHHH----HHHHTTT-CCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCcCCCCCC-HHHHHHHhCCHhHH----HHHHHcC-CCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 76544322 11122 23334556665533 3334444 4443221 12234445556666666666665544
No 287
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=69.76 E-value=22 Score=29.83 Aligned_cols=143 Identities=6% Similarity=0.004 Sum_probs=62.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHcCCChHHHHHHHhcCCCCCCc---hhHHHHHHHhcccchhHHH
Q 038303 51 LLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGIDVKPNA---NTLVSVLSACSSLVSHKLG 127 (461)
Q Consensus 51 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~p~~---~~~~~ll~~~~~~~~~~~a 127 (461)
.+...+..|+.+-+..+++.-..++...-.+.+...+..|+.+-+..+++. |..++. .-.+ .+...+..|+.+-+
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~t-~L~~A~~~g~~~~v 111 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFS-GLDDSQFDDKGNT-ALYYAVDSGNMQTV 111 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHT-TCCTTCCCTTSCC-HHHHHHHTTCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCc-HHHHHHHcCCHHHH
Confidence 344455677777777777664332222112334444556666555444443 232221 1112 22333344554433
Q ss_pred HHHHHHHHhhcCCCChh---HHHHHHHHHHHcCChhhHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHH
Q 038303 128 KAIHAHSLRNLNENNII---LDNAILDFYIRCGSLASCGYLFVKMPKR-NVVSWTTMIGGYAERGFCKEAVSVFQE 199 (461)
Q Consensus 128 ~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~ 199 (461)
..+ ++.|..++.. -+.+.+...+..|+.+-+..+++.-... +...-.+.+...+..|+.+-+.-+++.
T Consensus 112 ~~L----l~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 112 KLF----VKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHH----HHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHH----HhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 333 3334333321 1123444455566666666555554332 221222333344455555544444433
No 288
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=65.43 E-value=53 Score=29.47 Aligned_cols=336 Identities=11% Similarity=0.091 Sum_probs=157.3
Q ss_pred HHHHHHcCCChHHHHHHHhcCCCCCCch--hHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChh--HHHHHHHHHHHcC
Q 038303 82 IISGLSKCGFHKEAIDMFCGIDVKPNAN--TLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNII--LDNAILDFYIRCG 157 (461)
Q Consensus 82 li~~~~~~~~~~~a~~~~~~m~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g 157 (461)
.+...+..|+.+-+..+++. |..|+.. ...+.+...+..|+.+-+..+ ++.|..++.. .-.+.+...+..|
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~~g 91 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYL----LQNKAKVNAKAKDDQTPLHCAARIG 91 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHT-TCCSCCSSSCCCCHHHHHHHHTCHHHHHHH----HHHTCCSSCCCTTSCCHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCCCHHHHHHHCC
Confidence 34445667888777777765 3444322 122344455556666554444 4445443321 1123455566778
Q ss_pred ChhhHHHHHhcCCCC---chhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHH
Q 038303 158 SLASCGYLFVKMPKR---NVVSWTTMIGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHS 234 (461)
Q Consensus 158 ~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~ 234 (461)
+.+-+..+++.-..+ +..-++. +...+..|+.+-+..+++.-... ...+.... +.+...+..|+.+.+..+++
T Consensus 92 ~~~~v~~Ll~~ga~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~ 167 (437)
T 1n11_A 92 HTNMVKLLLENNANPNLATTAGHTP-LHIAAREGHVETVLALLEKEASQ--ACMTKKGF-TPLHVAAKYGKVRVAELLLE 167 (437)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHHTTCCS--CCCCTTSC-CHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHHhCCCCC--cCCCCCCC-CHHHHHHHcCCHHHHHHHHh
Confidence 888777777764432 2222333 34445677776655555432111 11111112 23334455566655444443
Q ss_pred HHHhhcCCCCcch--HHHHHHHHHHhcCCHHHHHHHHHHccCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 038303 235 YISTRYDLSVSNL--VGNAVINMYVKCGDVGIAIQVFNMLAYKDK---ISWSTVISGLAMNGCGRQALQLFSLMIINAVF 309 (461)
Q Consensus 235 ~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 309 (461)
.|..++.. .....+...+..|+.+-+.-+++.-..++. ..++. +...+..|+.+-+ +.+.+.|..
T Consensus 168 -----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~----~~Ll~~g~~ 237 (437)
T 1n11_A 168 -----RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTP-LHIAAKQNQVEVA----RSLLQYGGS 237 (437)
T ss_dssp -----TTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCH-HHHHHHTTCHHHH----HHHHHTTCC
T ss_pred -----CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCH-HHHHHHcCCHHHH----HHHHHcCCC
Confidence 34433321 112234445567777666666554433322 22233 3334556665444 344445544
Q ss_pred CCHh---HHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCc---chHHHHHHHHhhcCCHHHHHHHHHhC-CCC-chhh
Q 038303 310 PDDV---TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQM---QHYACVVDMYGRAGLLEEAEAFIREM-PIE-AEWS 381 (461)
Q Consensus 310 p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~ 381 (461)
++.. ..+ .+...+..|..+-...++ + .+..++. ...+ .+...++.|+.+-+..+++.- .+. .+..
T Consensus 238 ~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll----~-~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 310 (437)
T 1n11_A 238 ANAESVQGVT-PLHLAAQEGHAEMVALLL----S-KQANGNLGNKSGLT-PLHLVAQEGHVPVADVLIKHGVMVDATTRM 310 (437)
T ss_dssp TTCCCTTCCC-HHHHHHHTTCHHHHHHHH----T-TTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHHHTCCTTCCCSS
T ss_pred CCCCCCCCCC-HHHHHHHCCCHHHHHHHH----h-cCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHhCCccCCCCCCC
Confidence 4332 222 333444566665444443 3 2333332 1222 233445667777666666543 111 1211
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHcCCcccc
Q 038303 382 VWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGLKKKT 449 (461)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 449 (461)
-.+. +...+..|+.+-+..+++.-......+..-.+.|-. .++.|.. ++++.+.+.|..|+.
T Consensus 311 g~t~-L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~-A~~~g~~----~iv~~Ll~~ga~~~~ 372 (437)
T 1n11_A 311 GYTP-LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQ-AAQQGHT----DIVTLLLKNGASPNE 372 (437)
T ss_dssp CCCH-HHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHTTCH----HHHHHHHHTTCCSCC
T ss_pred CCCH-HHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHH-HHHCChH----HHHHHHHHCcCCCCC
Confidence 2222 334456778777777666533322222212222222 2334554 455556677877654
No 289
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=65.00 E-value=41 Score=28.16 Aligned_cols=76 Identities=7% Similarity=-0.121 Sum_probs=32.6
Q ss_pred cCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHH
Q 038303 187 RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 266 (461)
Q Consensus 187 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 266 (461)
..+..+..+++..- +-...|..-.+ .+...+..|+.+.+..+++. |..++..--.+.+...+..|+.+-+.
T Consensus 9 ~~~~~~v~~lL~~~---~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~-----g~~~~~~~g~t~L~~A~~~g~~~~v~ 79 (285)
T 3kea_A 9 TWKSKQLKSFLSSK---DTFKADVHGHS-ASYYAIADNNVRLVCTLLNA-----GALKNLLENEFPLHQAATLEDTKIVK 79 (285)
T ss_dssp GCCHHHHHHHHHST---TTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHT-----TGGGSCCTTCCHHHHHTTSSSCHHHH
T ss_pred hcCHHHHHHHHHhC---CCCccCCCCCC-HHHHHHHcCCHHHHHHHHhC-----CCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 34455555555432 21222333232 23334445665555444442 33333221223334445566666655
Q ss_pred HHHHH
Q 038303 267 QVFNM 271 (461)
Q Consensus 267 ~~~~~ 271 (461)
.+++.
T Consensus 80 ~Ll~~ 84 (285)
T 3kea_A 80 ILLFS 84 (285)
T ss_dssp HHHHT
T ss_pred HHHHC
Confidence 55554
No 290
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=64.47 E-value=28 Score=28.34 Aligned_cols=19 Identities=11% Similarity=-0.095 Sum_probs=9.4
Q ss_pred HHHHcCCChHHHHHHHhcC
Q 038303 84 SGLSKCGFHKEAIDMFCGI 102 (461)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~m 102 (461)
+.+....++++|++++++.
T Consensus 26 Dv~IA~r~feeAv~lle~~ 44 (235)
T 2d2s_A 26 DIELARLRFESAVETLLDI 44 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHH
Confidence 4444455555555555443
No 291
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=64.20 E-value=31 Score=27.65 Aligned_cols=28 Identities=11% Similarity=-0.068 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 038303 382 VWGALLNACRIHRNDEMFDRIRQDLVNK 409 (461)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 409 (461)
.|......+...|++.+|..+|+..++.
T Consensus 152 fYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 152 FYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4455555566666666666666666653
No 292
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=63.80 E-value=80 Score=32.12 Aligned_cols=86 Identities=6% Similarity=-0.190 Sum_probs=51.3
Q ss_pred HHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC--CCCch---------------
Q 038303 317 ALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM--PIEAE--------------- 379 (461)
Q Consensus 317 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~--------------- 379 (461)
.++..|...|.++-|.++.. -++.++..--.+..+|...|++++|...|+++ ++.++
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~------~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~ 888 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIG------WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 888 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGG------GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHH
T ss_pred HHHHHHHHhcHHHHHHHHHh------hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccC
Confidence 35666777777776655432 22233333345677888899999999999887 22111
Q ss_pred --------hhHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 038303 380 --------WSVWGALLNACRIHRNDEMFDRIRQDLVN 408 (461)
Q Consensus 380 --------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 408 (461)
..-|..++..+.+.+.++.+.++.+.+++
T Consensus 889 ~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 889 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 01344445555666666666666666665
No 293
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=59.89 E-value=81 Score=26.86 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=15.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHccCC
Q 038303 250 NAVINMYVKCGDVGIAIQVFNMLAYK 275 (461)
Q Consensus 250 ~~li~~~~~~g~~~~a~~~~~~~~~~ 275 (461)
..++.-|...|+.++|...++++..|
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p 32 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLG 32 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCc
Confidence 34555566666666666666665544
No 294
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.64 E-value=1.2e+02 Score=28.21 Aligned_cols=179 Identities=12% Similarity=0.120 Sum_probs=92.3
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHccCCCh-h------hHH-HHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-h---
Q 038303 246 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDK-I------SWS-TVISGLAMNGCGRQALQLFSLMIINAVFPDD-V--- 313 (461)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~------~~~-~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~--- 313 (461)
..++|.+++.|...+.++.|..+..+..-|.. . .|. -+...+.-.+++.+|.+.+......-..... .
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr 310 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFL 310 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHH
Confidence 34668888999999999999999988875522 1 122 2345567788999999888887764222111 1
Q ss_pred --H--HHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCchhhHHHHHHHH
Q 038303 314 --T--FIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 389 (461)
Q Consensus 314 --~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 389 (461)
. |..++..+ .|++..- .+|. . .++......|..|..++ +.|++++-...++.-. ..
T Consensus 311 ~~a~K~lI~V~LL--lG~iP~r-~lf~---q-~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~------------~~ 370 (523)
T 4b4t_S 311 QQSNKLHCCIQLL--MGDIPEL-SFFH---Q-SNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYK------------QL 370 (523)
T ss_dssp HHHHHHHHHHHHH--HTCCCCH-HHHT---T-TSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTH------------HH
T ss_pred HHHHHHHHhHHhh--cCCCCCh-HHhh---c-hhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhc------------ce
Confidence 1 11122211 2443321 1111 1 11112233466666665 6677766555554431 12
Q ss_pred HHhcCChHHHHHHHHHHhh-----cC-CCChhHHHHHHHHHhccCChhhHHHHHHHHHHcCC
Q 038303 390 CRIHRNDEMFDRIRQDLVN-----KK-GVSVGTFALMSNTFAGADRWEDTNKIRDEIRRMGL 445 (461)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~-----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 445 (461)
+.+.|.+.-..++-.-+.+ .. .-+......+...+ .....++|..++-+|...|.
T Consensus 371 F~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL-~L~s~eeaE~iVAkmI~dG~ 431 (523)
T 4b4t_S 371 LLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKL-NLDSEQTVEYMVSRAIRDGV 431 (523)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHH-HHHHSSCHHHHHHHHHHHTS
T ss_pred eccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHh-CCCCHHHHHHHHHHHHHcCC
Confidence 3444554444433333222 11 11112222222222 12234678999999988874
No 295
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=58.49 E-value=8.5 Score=23.29 Aligned_cols=25 Identities=8% Similarity=0.010 Sum_probs=20.6
Q ss_pred cCChHHHHHHHHHHHhcCCCCCChh
Q 038303 187 RGFCKEAVSVFQEMEKTKEAEPNEA 211 (461)
Q Consensus 187 ~~~~~~a~~~~~~m~~~~~~~~~~~ 211 (461)
.-|++.|...|.++...|.+||+..
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 5589999999999988876777654
No 296
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=58.11 E-value=42 Score=25.06 Aligned_cols=62 Identities=15% Similarity=0.259 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHccCCC---hhhHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCCCC
Q 038303 250 NAVINMYVKCGDVGIAIQVFNMLAYKD---KISWSTVISGLAMNGC--GRQALQLFSLMIINAVFPD 311 (461)
Q Consensus 250 ~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~p~ 311 (461)
..++.-|...|+.++|...++++..|. ......+..++-+.++ .+.+..++..+...|+-+.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 567788888899999999988887662 2334445555555322 4456777777776665443
No 297
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=57.81 E-value=50 Score=23.77 Aligned_cols=63 Identities=16% Similarity=0.280 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHccCCC---hhhHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCCCCH
Q 038303 250 NAVINMYVKCGDVGIAIQVFNMLAYKD---KISWSTVISGLAMNGC--GRQALQLFSLMIINAVFPDD 312 (461)
Q Consensus 250 ~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~p~~ 312 (461)
..++.-|...|+.++|...++++..|. ......+..++-+.++ .+.+..++..+...|+-+..
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 567778888889999988888887662 2334445555555432 35677777777766654433
No 298
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=56.84 E-value=1.4e+02 Score=28.71 Aligned_cols=16 Identities=13% Similarity=0.244 Sum_probs=12.7
Q ss_pred hccCChhhHHHHHHHH
Q 038303 425 AGADRWEDTNKIRDEI 440 (461)
Q Consensus 425 ~~~g~~~~A~~~~~~m 440 (461)
...|+|++|++.++++
T Consensus 549 ~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 549 YFNKQWQETLSQMELL 564 (661)
T ss_dssp HHTTCHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHhC
Confidence 6789999998877664
No 299
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=56.60 E-value=25 Score=25.88 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=8.6
Q ss_pred HHHHcCChhhHHHHHhc
Q 038303 152 FYIRCGSLASCGYLFVK 168 (461)
Q Consensus 152 ~~~~~g~~~~a~~~~~~ 168 (461)
..+..|+.+-+..+++.
T Consensus 107 ~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 107 LAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHHHTCHHHHHHHHTT
T ss_pred HHHHhChHHHHHHHHhc
Confidence 33445555555555544
No 300
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.28 E-value=64 Score=29.85 Aligned_cols=61 Identities=15% Similarity=0.067 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHHcCChhhHHHHHhcCCCCch-------hHH-HHHHHHHHhcCChHHHHHHHHHHHhc
Q 038303 143 IILDNAILDFYIRCGSLASCGYLFVKMPKRNV-------VSW-TTMIGGYAERGFCKEAVSVFQEMEKT 203 (461)
Q Consensus 143 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~-~~li~~~~~~~~~~~a~~~~~~m~~~ 203 (461)
...+|.+++.|...+.+++|..+..+..-|.. ..| ..+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 46678899999999999999999998865422 122 23456677889999999999988765
No 301
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=54.21 E-value=47 Score=26.43 Aligned_cols=50 Identities=14% Similarity=0.013 Sum_probs=27.2
Q ss_pred HHHhhCCHHHHHHHHHHHHHhCCCccHH--HHHHHHHHHHhcCCHHHHHHHHhhCC
Q 038303 19 ACSLAHPHQKALEIHAHVIEYGHLHDIF--IQNSLLHFYVTVKDIFSAHQIFNSVV 72 (461)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~ 72 (461)
..++.|+.+.... +.+.|..++.. .-.+.+...++.|+.+-+.-+++.-.
T Consensus 15 ~A~~~g~~~~~~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 15 KATQYGIYERCRE----LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp HHHHTTCHHHHHH----HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHcCChHHHHH----HHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 3456667554444 44455443321 11234556667788777777776653
No 302
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=53.91 E-value=77 Score=24.77 Aligned_cols=58 Identities=10% Similarity=0.038 Sum_probs=30.3
Q ss_pred HHHHHHHHHhCCCC-chhh-HH-----HHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHH
Q 038303 364 LEEAEAFIREMPIE-AEWS-VW-----GALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMS 421 (461)
Q Consensus 364 ~~~A~~~~~~~~~~-p~~~-~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 421 (461)
.+.|+.+|+.+... ++.. .. ...+..|.+.|.+++|.+++++..+..+.+...-..|+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~ 158 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLL 158 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 56777777777322 2111 11 11233388888888888888887765544433333333
No 303
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=53.30 E-value=18 Score=26.19 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=13.1
Q ss_pred HHHHHHHHcCCChHHHHHHHhcC
Q 038303 80 TTIISGLSKCGFHKEAIDMFCGI 102 (461)
Q Consensus 80 ~~li~~~~~~~~~~~a~~~~~~m 102 (461)
+.++.-|...|+.++|.++++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34455555556666666666555
No 304
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=53.04 E-value=82 Score=24.80 Aligned_cols=16 Identities=19% Similarity=0.135 Sum_probs=10.4
Q ss_pred ChHHHHHHHHHHHhcC
Q 038303 189 FCKEAVSVFQEMEKTK 204 (461)
Q Consensus 189 ~~~~a~~~~~~m~~~~ 204 (461)
...++.++|..|..+|
T Consensus 94 ~~~~p~~if~~L~~~~ 109 (202)
T 3esl_A 94 NFHESENTFKYMFNKG 109 (202)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHCC
Confidence 3556667777776665
No 305
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=52.29 E-value=1.6e+02 Score=29.87 Aligned_cols=125 Identities=7% Similarity=-0.054 Sum_probs=70.5
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHcCCChHHHHHHHhcC--CCCCCchhHHHHHHHhcccchhHHHH
Q 038303 51 LLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAIDMFCGI--DVKPNANTLVSVLSACSSLVSHKLGK 128 (461)
Q Consensus 51 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~ 128 (461)
++..+...|..+-|.++...... ++..--.+..+|...|++++|..+|++. |+..+....... ....
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~----------~~~~ 884 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVL----------REFQ 884 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGG----------HHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccch----------hhhh
Confidence 56667778888888776665543 4433334567888999999999999998 554332111100 0000
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhc----CCCCc----hhHHHHHHHHHHhcC
Q 038303 129 AIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVK----MPKRN----VVSWTTMIGGYAERG 188 (461)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~~----~~~~~~li~~~~~~~ 188 (461)
.++.. .+. ......-|..++..+-+.+-++-+..+-+. +...| ...|+.+.++.+..|
T Consensus 885 ~ll~~-~e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 885 EIAEK-YHH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHH-TTT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hccCc-ccc-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 11110 000 011223677788888888887776555433 32222 235677777666544
No 306
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=52.05 E-value=87 Score=27.12 Aligned_cols=51 Identities=10% Similarity=0.010 Sum_probs=22.1
Q ss_pred HHHHHcCChhhHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038303 151 DFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCKEAVSVFQEME 201 (461)
Q Consensus 151 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 201 (461)
...+..|+.+-+..+++.-...+...-.+.+...+..|+.+-+..+++...
T Consensus 58 ~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~ 108 (364)
T 3ljn_A 58 HLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAK 108 (364)
T ss_dssp HHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhcc
Confidence 334445555555555554433222111112233345566555555555433
No 307
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=49.92 E-value=1.1e+02 Score=25.26 Aligned_cols=46 Identities=13% Similarity=-0.026 Sum_probs=16.8
Q ss_pred CcchHHHHHHHHHHhcCCHHHHHHHHHHccCCChhhHHHHHHHHHh
Q 038303 244 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDKISWSTVISGLAM 289 (461)
Q Consensus 244 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 289 (461)
++..+-...+.++.+.|+.+....+.+.+..++...-...+.++..
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 185 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAINI 185 (280)
T ss_dssp SCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 3444444444444444443322223333333444333333333333
No 308
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=49.71 E-value=1.2e+02 Score=25.80 Aligned_cols=53 Identities=11% Similarity=-0.056 Sum_probs=27.9
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHH---HHHHHHHHHhcCCHHHHHHHHhhC
Q 038303 15 QALKACSLAHPHQKALEIHAHVIEYGHLHDIFI---QNSLLHFYVTVKDIFSAHQIFNSV 71 (461)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~ 71 (461)
+.+...++.|+++-+..++ +.|..++... -.+-+...++.|+.+-+.-+++.-
T Consensus 27 t~L~~Av~~g~~~~V~~LL----~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~g 82 (337)
T 4g8k_A 27 HLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 82 (337)
T ss_dssp HHHHHHHHTTCHHHHHHHH----HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred hHHHHHHHcCCHHHHHHHH----HCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcC
Confidence 3444456677765554443 4565554221 112344445677777666666654
No 309
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=49.36 E-value=66 Score=23.63 Aligned_cols=59 Identities=10% Similarity=0.002 Sum_probs=24.8
Q ss_pred HHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCC
Q 038303 303 MIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363 (461)
Q Consensus 303 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 363 (461)
+.+.|++++..-. .++..+...+..-.|.++++.+.+ .+...+..|...-++.+...|-
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~-~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEG-KFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGG-GCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHH-hCCCCChhhHHHHHHHHHHCCC
Confidence 3444544443322 223333333444455555555544 2333333343334444444443
No 310
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=48.11 E-value=63 Score=24.84 Aligned_cols=75 Identities=7% Similarity=-0.123 Sum_probs=34.8
Q ss_pred HHHhcCCHHHHHHHHHHcc-C---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHh---HHHHHHHHHHcCCC
Q 038303 255 MYVKCGDVGIAIQVFNMLA-Y---KDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDDV---TFIALISACSHGGL 327 (461)
Q Consensus 255 ~~~~~g~~~~a~~~~~~~~-~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~~~ 327 (461)
..+..|+.+....++..-. . .+..-++.+.. .++.|+.+ +++.+.+.|..|+.. ..+. +...+..|+
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~ 84 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNI-AVHNNDIE----IAKALIDRGADINLQNSISDSP-YLYAGAQGR 84 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHH-HHHHTCHH----HHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTC
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHHcCCCCCCCCCCCCCH-HHHHHHcCC
Confidence 3456677777777776443 1 22222333333 34455543 334444455544432 1222 233344566
Q ss_pred hHHHHHHH
Q 038303 328 VDQGLILF 335 (461)
Q Consensus 328 ~~~a~~~~ 335 (461)
.+-+..++
T Consensus 85 ~~~~~~Ll 92 (201)
T 3hra_A 85 TEILAYML 92 (201)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544444
No 311
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=48.05 E-value=23 Score=26.49 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=13.7
Q ss_pred HHHHHHHHcCCChHHHHHHHhcC
Q 038303 80 TTIISGLSKCGFHKEAIDMFCGI 102 (461)
Q Consensus 80 ~~li~~~~~~~~~~~a~~~~~~m 102 (461)
+.++.-|...|+.++|.++++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 44555565666666666666665
No 312
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=47.02 E-value=83 Score=24.11 Aligned_cols=16 Identities=13% Similarity=0.167 Sum_probs=7.3
Q ss_pred HHHcCChhhHHHHHhc
Q 038303 153 YIRCGSLASCGYLFVK 168 (461)
Q Consensus 153 ~~~~g~~~~a~~~~~~ 168 (461)
.+..|+.+-+..+++.
T Consensus 113 A~~~~~~~~v~~Ll~~ 128 (201)
T 3hra_A 113 AAEKGHIDNVKLLLED 128 (201)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHc
Confidence 3344455444444443
No 313
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=47.01 E-value=1.1e+02 Score=24.72 Aligned_cols=23 Identities=4% Similarity=-0.106 Sum_probs=14.3
Q ss_pred HHHHHHcCCChHHHHHHHHHhHh
Q 038303 318 LISACSHGGLVDQGLILFKAMST 340 (461)
Q Consensus 318 ll~~~~~~~~~~~a~~~~~~~~~ 340 (461)
-+..+....++++|..++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 35556666666666666665544
No 314
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=46.50 E-value=1.1e+02 Score=24.21 Aligned_cols=48 Identities=2% Similarity=-0.287 Sum_probs=26.8
Q ss_pred HHHhcCCHHHHHHHHhhCCCCC---ceeHHHHHHHHHcCCChHHHHHHHhcC
Q 038303 54 FYVTVKDIFSAHQIFNSVVFPD---VVSWTTIISGLSKCGFHKEAIDMFCGI 102 (461)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m 102 (461)
..++.|+++....+++.-..++ .... +.+...+..|+.+-+.-+++.-
T Consensus 15 ~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~~ 65 (240)
T 3eu9_A 15 KATQYGIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRIDLVKYYISKG 65 (240)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHcCChHHHHHHHHcCCCcCCCCCCCC-CHHHHHHHhCCHHHHHHHHHcC
Confidence 3456788888777777653322 2222 2344455667766665555543
No 315
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=44.49 E-value=79 Score=23.82 Aligned_cols=58 Identities=7% Similarity=0.016 Sum_probs=26.4
Q ss_pred HhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhc--CCCCCcchHHHHHHHHhhcCC
Q 038303 304 IINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY--EIVPQMQHYACVVDMYGRAGL 363 (461)
Q Consensus 304 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 363 (461)
.+.|++++..- ..++..+...+..-.|.++++.+.+ . +...+..|.-.-++.+...|-
T Consensus 25 ~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~-~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 25 RQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQ-AEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHH-HCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHCCC
Confidence 34455544322 2334444444555555555555554 2 333333333334445555544
No 316
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=43.77 E-value=2.3e+02 Score=27.30 Aligned_cols=25 Identities=12% Similarity=-0.100 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHH
Q 038303 13 FTQALKACSLAHPHQKALEIHAHVI 37 (461)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~ 37 (461)
...+|-.|.|.|++++|.++.++..
T Consensus 155 ~Wa~IyY~LR~G~~~~A~e~~~~~~ 179 (661)
T 2qx5_A 155 IWALIFYLLRAGLIKEALQVLVENK 179 (661)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTG
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhh
Confidence 6677888999999999999887653
No 317
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=43.26 E-value=96 Score=22.91 Aligned_cols=37 Identities=3% Similarity=0.020 Sum_probs=15.0
Q ss_pred CCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcC
Q 038303 325 GGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAG 362 (461)
Q Consensus 325 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 362 (461)
.+..-.|.++++.+.+ .+...+..|.-.-++.+...|
T Consensus 39 ~~~~~sa~ei~~~l~~-~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 39 SGTHLSPEEITHSIRQ-KDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp CSSCBCHHHHHHHHHH-HSTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHH-hCCCCCHhhHHHHHHHHHHCC
Confidence 3334444455544444 232333333333334444444
No 318
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=43.06 E-value=1e+02 Score=22.98 Aligned_cols=24 Identities=21% Similarity=0.069 Sum_probs=9.6
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCC
Q 038303 286 GLAMNGCGRQALQLFSLMIINAVF 309 (461)
Q Consensus 286 ~~~~~~~~~~a~~~~~~m~~~g~~ 309 (461)
.+-..|++.+|.++|+.-++.+-.
T Consensus 110 ~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 110 HLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCc
Confidence 333344444444444444433333
No 319
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=43.01 E-value=23 Score=22.91 Aligned_cols=45 Identities=13% Similarity=0.165 Sum_probs=22.9
Q ss_pred HHHHHHHhhC-CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcC
Q 038303 15 QALKACSLAH-PHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK 59 (461)
Q Consensus 15 ~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 59 (461)
.++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|
T Consensus 21 ~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3444444443 44555566666655544444445445555555544
No 320
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=40.44 E-value=50 Score=22.29 Aligned_cols=37 Identities=22% Similarity=0.073 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHccCCChhhHHHHHHHHHhcCChHHH
Q 038303 260 GDVGIAIQVFNMLAYKDKISWSTVISGLAMNGCGRQA 296 (461)
Q Consensus 260 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 296 (461)
.+.++|.++++.+..+....|..++.++...|...-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 3567777777777777777777777777665655444
No 321
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=38.00 E-value=1.3e+02 Score=25.89 Aligned_cols=16 Identities=6% Similarity=-0.126 Sum_probs=9.5
Q ss_pred HhhcCCHHHHHHHHHh
Q 038303 358 YGRAGLLEEAEAFIRE 373 (461)
Q Consensus 358 ~~~~g~~~~A~~~~~~ 373 (461)
.+..|+.+-+..+++.
T Consensus 180 A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 180 AMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhc
Confidence 3456666666666654
No 322
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=37.50 E-value=2e+02 Score=24.68 Aligned_cols=126 Identities=10% Similarity=0.035 Sum_probs=0.0
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhc---CC
Q 038303 287 LAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRA---GL 363 (461)
Q Consensus 287 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~ 363 (461)
+...|++++|+..|+... +...+-......+.+++.+++....+ .+...-++.-.+. .+
T Consensus 124 ~~t~gKf~eAl~~Fr~iL----------~~i~l~~v~~~~e~~e~~eli~icrE--------Yilal~iEl~Rr~l~~~~ 185 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAI----------YRITLLMVDDAEDEKLAHKILETARE--------YILGLSIELERRSLKEGN 185 (325)
T ss_dssp HHHTTCHHHHHHHHHHHH----------HHHHTCCBCSSHHHHHHHHHHHHHHH--------HHHHHHHHHHHHTCCTTC
T ss_pred HHhcCCHHHHHHHHHHHH----------HHhheeeeccHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcCccc
Q ss_pred HHHHHHHHHhC---CCCchhh--HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHHH
Q 038303 364 LEEAEAFIREM---PIEAEWS--VWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIRD 438 (461)
Q Consensus 364 ~~~A~~~~~~~---~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 438 (461)
..+..++-.-+ +..|... +....|..+.+.+++..|..+.+++++..|... ..++|.+++.
T Consensus 186 ~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~ 251 (325)
T 3mv2_A 186 TVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKN 251 (325)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHH
Q ss_pred HHHHcC
Q 038303 439 EIRRMG 444 (461)
Q Consensus 439 ~m~~~g 444 (461)
...+.+
T Consensus 252 ~ce~~~ 257 (325)
T 3mv2_A 252 KADSMA 257 (325)
T ss_dssp HHHTSC
T ss_pred HHhcCC
No 323
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=36.47 E-value=1.5e+02 Score=23.21 Aligned_cols=18 Identities=6% Similarity=0.117 Sum_probs=9.7
Q ss_pred HHHHhcCCHHHHHHHHhh
Q 038303 53 HFYVTVKDIFSAHQIFNS 70 (461)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~ 70 (461)
...++.|+.+.+..+++.
T Consensus 8 ~~A~~~g~~~~v~~Ll~~ 25 (232)
T 2rfa_A 8 LLAAKENDVQALSKLLKF 25 (232)
T ss_dssp HHHHHTTCHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHh
Confidence 334455666655555554
No 324
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=35.98 E-value=1.1e+02 Score=24.20 Aligned_cols=176 Identities=11% Similarity=-0.062 Sum_probs=80.6
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHhCCCccHH--HHHHHHHHHHhcCCHHHHHHHHhhCCC--------CCceeHHHHHHHH
Q 038303 17 LKACSLAHPHQKALEIHAHVIEYGHLHDIF--IQNSLLHFYVTVKDIFSAHQIFNSVVF--------PDVVSWTTIISGL 86 (461)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~li~~~ 86 (461)
+...++.|+.+....+++. .|..++.. .-.+.+...+..|+.+-+..+++.-.. .|...++.| ...
T Consensus 7 L~~A~~~g~~~~v~~Ll~~---~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L-~~A 82 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKF---EGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTAL-HIA 82 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTT---TCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHH-HHH
T ss_pred HHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHH-HHH
Confidence 4455667776655555442 14333221 112234455567888777777765421 111222333 334
Q ss_pred HcCCChHHHHHHHhcCCCCCCch---------------hHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhH--HHHH
Q 038303 87 SKCGFHKEAIDMFCGIDVKPNAN---------------TLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL--DNAI 149 (461)
Q Consensus 87 ~~~~~~~~a~~~~~~m~~~p~~~---------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l 149 (461)
+..|+.+-+..+++.- ..++.. .-.+.+...+..|+.+-+ +.+++.|..++... -.+-
T Consensus 83 ~~~~~~~~v~~Ll~~g-~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~ga~~~~~d~~g~t~ 157 (232)
T 2rfa_A 83 VINQNVNLVRALLARG-ASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIV----RLLIEHGADIRAQDSLGNTV 157 (232)
T ss_dssp HHTTCHHHHHHHHHTT-CCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHH----HHHHHTTCCTTCCCTTSCCH
T ss_pred HHcCCHHHHHHHHhCC-CCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCCCCCCCCH
Confidence 4567766555555442 222211 112233334445555433 34445555443221 1234
Q ss_pred HHHHHHcCChhhHH----HHHhcCCC---------CchhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038303 150 LDFYIRCGSLASCG----YLFVKMPK---------RNVVSWTTMIGGYAERGFCKEAVSVFQEMEK 202 (461)
Q Consensus 150 ~~~~~~~g~~~~a~----~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 202 (461)
+...+..|+.+-+. -+++.-.. +|..-++. +...++.|+.+-+..+++.-..
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp-l~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP-FKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH-HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH-HHHHHHcCCHHHHHHHHhcCcc
Confidence 45556667776652 22222111 12222222 3444567777666666555443
No 325
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=35.96 E-value=1.6e+02 Score=23.10 Aligned_cols=46 Identities=9% Similarity=0.062 Sum_probs=33.2
Q ss_pred HHHHHHHH---hcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccc
Q 038303 178 TTMIGGYA---ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224 (461)
Q Consensus 178 ~~li~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~ 224 (461)
..+|+++. +..+++.|+-++-+|.+.| ..|.-..-..++.+.-..|
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~G-EDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAG-GDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhhcc
Confidence 34455554 4689999999999999988 7777666666666665554
No 326
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=35.01 E-value=57 Score=21.74 Aligned_cols=25 Identities=8% Similarity=0.163 Sum_probs=14.7
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHH
Q 038303 416 TFALMSNTFAGADRWEDTNKIRDEI 440 (461)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~m 440 (461)
.+...+..+.+.|+|++|++..++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 4555566666666666666555443
No 327
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=34.21 E-value=98 Score=25.07 Aligned_cols=55 Identities=9% Similarity=-0.072 Sum_probs=29.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCChhh-------HHHHHHHh--hccchhhhHHHHHHHH
Q 038303 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEAT-------LVNVLSAC--SSISALSFGKYVHSYI 236 (461)
Q Consensus 181 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-------~~~~l~~~--~~~~~~~~a~~~~~~~ 236 (461)
+...++.|+.+....+++.+.+.| ..++... .+.+..+. ++.|+.+.+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~-~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHK-KRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHT-CCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC-CCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 334566777777777777666655 4444222 22333332 1456666665555543
No 328
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=34.18 E-value=81 Score=22.62 Aligned_cols=46 Identities=17% Similarity=0.041 Sum_probs=28.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCCh
Q 038303 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328 (461)
Q Consensus 283 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 328 (461)
++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 4455555556667777777777666556666665666666655544
No 329
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=33.70 E-value=1.8e+02 Score=23.15 Aligned_cols=122 Identities=14% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHHc--CCChHHHHHHHHHhHhhcCCCCCcc--hHHHHHHHHhhcCC----------------HHHHHHHHHhC
Q 038303 315 FIALISACSH--GGLVDQGLILFKAMSTVYEIVPQMQ--HYACVVDMYGRAGL----------------LEEAEAFIREM 374 (461)
Q Consensus 315 ~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~----------------~~~A~~~~~~~ 374 (461)
+..+.++++. .+++.+-..+++.+.. .++..... ---.+++.+.+..+ .+.|+.+|+.+
T Consensus 20 f~~~c~aFR~~r~~dFrq~rdi~eall~-~~l~~~~~~~k~iri~QfLsRI~eG~~LD~~Fd~~~~lTPLESAl~v~~~I 98 (235)
T 3bu8_A 20 FHEALRAFRGSRYGDFRQIRDIMQALLV-RPLGKEHTVSRLLRVMQCLSRIEEGENLDCSFDMEAELTPLESAINVLEMI 98 (235)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCCCCCHHHHHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHh-CcccccccchhHHHHHHHHHHHHcCCCCCcccCCCCCCChHHHHHHHHHHH
Q ss_pred ----CCCchhh------HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHhccCChhhHHHHH
Q 038303 375 ----PIEAEWS------VWGALLNACRIHRNDEMFDRIRQDLVNKKGVSVGTFALMSNTFAGADRWEDTNKIR 437 (461)
Q Consensus 375 ----~~~p~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 437 (461)
....+.. .-...+..|.+.|.+++|.+++++..+..+.+...-..|+..-.+..-+...++-|
T Consensus 99 ~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~H~~lqnF 171 (235)
T 3bu8_A 99 KTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHPVIQNF 171 (235)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTTSHHHHTC
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcccHHHHhc
No 330
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=33.55 E-value=67 Score=23.08 Aligned_cols=46 Identities=11% Similarity=0.000 Sum_probs=32.9
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCC
Q 038303 15 QALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60 (461)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 60 (461)
.++..+...+..-.|.++++.+.+.+...+..|.-..|+.+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 4566666667778888888888887766666666666777776664
No 331
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=33.23 E-value=2.8e+02 Score=25.26 Aligned_cols=27 Identities=11% Similarity=0.109 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHcCChhhHHHHHhcCC
Q 038303 144 ILDNAILDFYIRCGSLASCGYLFVKMP 170 (461)
Q Consensus 144 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 170 (461)
..|..-.+.+...|++++|-++-...+
T Consensus 362 ~L~~~~F~~l~~~g~y~~AA~~aA~sP 388 (494)
T 1bpo_A 362 ELFARKFNALFAQGNYSEAAKVAANAP 388 (494)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCc
Confidence 334444444555555555555544443
No 332
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=32.98 E-value=1.1e+02 Score=22.99 Aligned_cols=57 Identities=9% Similarity=-0.042 Sum_probs=36.2
Q ss_pred CCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhh--cCCCChhHHHHHHHHHHHcCChh
Q 038303 103 DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRN--LNENNIILDNAILDFYIRCGSLA 160 (461)
Q Consensus 103 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 160 (461)
|++++. .-..++..+...+..-.|.++++.+.+. ++..+..|.-.-++.+.+.|-+.
T Consensus 28 g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 28 GLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp TCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 666643 2344555666666677788888888777 66666665555666677766543
No 333
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=32.64 E-value=1.8e+02 Score=22.78 Aligned_cols=144 Identities=13% Similarity=0.054 Sum_probs=66.8
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CceeHHHHHHHHHcCCChH
Q 038303 17 LKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFP---DVVSWTTIISGLSKCGFHK 93 (461)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~ 93 (461)
+...++.|+++....+++.-...-..++..-+ +.+...+..|+.+-+..+++.-..+ |...++.+. ..+..|+.+
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~ 87 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSR-TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLH-IAASAGXDE 87 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSC-CHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHH-HHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCC-CHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHH-HHHHcCHHH
Confidence 55667788888777776653221111122222 2344556678887777777654332 222233333 334456665
Q ss_pred HHHHHHhcCCCCCC---chhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhH--HHHHHHHHHHcCChhhHHHHHhc
Q 038303 94 EAIDMFCGIDVKPN---ANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIIL--DNAILDFYIRCGSLASCGYLFVK 168 (461)
Q Consensus 94 ~a~~~~~~m~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~ 168 (461)
-+..+++. +..++ ..-.+ .+...+..|+.+.+ +.+.+.|..++... -.+.+...+..|+.+-+..+++.
T Consensus 88 ~v~~Ll~~-g~~~~~~~~~g~t-~L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 161 (231)
T 3aji_A 88 IVKALLVK-GAHVNAVNQNGCT-PLHYAASKNRHEIA----VMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161 (231)
T ss_dssp HHHHHHHT-TCCTTCCCTTSCC-HHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHc-CCCCCCCCCCCCC-HHHHHHHcCCHHHH----HHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc
Confidence 44444443 22222 11112 22333344554433 33344444433221 12234444556666666555554
No 334
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=32.22 E-value=57 Score=22.03 Aligned_cols=64 Identities=11% Similarity=0.009 Sum_probs=43.7
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHcCCChHHHH
Q 038303 31 EIHAHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCGFHKEAI 96 (461)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 96 (461)
.+++.+.+.|+- +..-...+-. .......+.|.++++.++...+.+|..++.++...|...-|.
T Consensus 25 ~vld~L~~~~vl-t~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 25 QLWDVLLSRELF-RPHMIEDIQR-AGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp TTHHHHHHTTSS-CHHHHHHHHT-STTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHh-ccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 467777777754 4333332221 101257899999999998888899999999998777766554
No 335
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=32.08 E-value=1.8e+02 Score=22.77 Aligned_cols=55 Identities=9% Similarity=0.001 Sum_probs=36.8
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCCh-----HHHHHHHHHhHhhcCC
Q 038303 288 AMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV-----DQGLILFKAMSTVYEI 344 (461)
Q Consensus 288 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~ 344 (461)
.+..+++.|+-.+-+|.+.| .|....-..++.+....|.- ..|...++.... .|.
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~-iG~ 84 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEK-LGL 84 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHH-HCT
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH-hCC
Confidence 45688999999999999999 77666666666666665542 234444444444 454
No 336
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=31.49 E-value=66 Score=23.43 Aligned_cols=47 Identities=13% Similarity=0.081 Sum_probs=31.6
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCC
Q 038303 14 TQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD 60 (461)
Q Consensus 14 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 60 (461)
..++..+...+..-.|.++++.+.+.+...+..|.-..|+.+...|-
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 34566666666677788888888777766666655555666666654
No 337
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=31.49 E-value=2.4e+02 Score=23.88 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCce----eHHHHHHHHHcCCChHHHHHHHhc
Q 038303 49 NSLLHFYVTVKDIFSAHQIFNSVVFPDVV----SWTTIISGLSKCGFHKEAIDMFCG 101 (461)
Q Consensus 49 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~ 101 (461)
++.+...++.|+++-+..+++.-..+|.. -++.|. ..+..|+.+-+.-+++.
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh-~A~~~g~~~iv~~Ll~~ 81 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLH-NAVQMSREDIVELLLRH 81 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHH-HHHHTTCHHHHHHHHHT
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHH-HHHHcCCHHHHHHHHHc
Confidence 34555567889999999999876444322 233343 34566776655555543
No 338
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=31.18 E-value=74 Score=23.16 Aligned_cols=46 Identities=17% Similarity=0.068 Sum_probs=25.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCCh
Q 038303 283 VISGLAMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGLV 328 (461)
Q Consensus 283 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 328 (461)
++..+...++.-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 4444444455556666666666655555555555555555554443
No 339
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=29.94 E-value=2.3e+02 Score=23.19 Aligned_cols=48 Identities=6% Similarity=-0.152 Sum_probs=20.3
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHcCC
Q 038303 43 HDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDVVSWTTIISGLSKCG 90 (461)
Q Consensus 43 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 90 (461)
++...-...+..+++.|..+....+.+.+..++...-...+.++...|
T Consensus 35 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp SSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 344444445555555554333333333333444433333444444333
No 340
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=29.83 E-value=2e+02 Score=22.57 Aligned_cols=21 Identities=5% Similarity=-0.010 Sum_probs=10.8
Q ss_pred HHhcCChHHHHHHHHHHHhcC
Q 038303 184 YAERGFCKEAVSVFQEMEKTK 204 (461)
Q Consensus 184 ~~~~~~~~~a~~~~~~m~~~~ 204 (461)
.+..|+.+-+..+++.+.+.|
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 345566655555555444443
No 341
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=29.77 E-value=2.1e+02 Score=22.67 Aligned_cols=49 Identities=16% Similarity=0.202 Sum_probs=35.0
Q ss_pred hHHHHHHHHHH---hcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccc
Q 038303 175 VSWTTMIGGYA---ERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 224 (461)
Q Consensus 175 ~~~~~li~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~ 224 (461)
..+..+|+++. +..+++.|+-++-+|.+.| ..|.-..-..++.+.-..|
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~G-EDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAG-EDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHTTG
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhhcc
Confidence 34444556655 4689999999999999988 7777766666666665554
No 342
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=29.39 E-value=1.2e+02 Score=22.29 Aligned_cols=35 Identities=6% Similarity=-0.018 Sum_probs=14.8
Q ss_pred hHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCC
Q 038303 328 VDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363 (461)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 363 (461)
.-.|.++++.+.+ .+...+..|.-.-++.+...|-
T Consensus 33 h~ta~ei~~~l~~-~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 33 HATPDDILGEVRK-TASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp SBCHHHHHHHHHT-TCTTCCHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHh-hCCCCCHhHHHHHHHHHHHCCc
Confidence 3445555555544 2333333333333444444443
No 343
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=29.19 E-value=1.4e+02 Score=21.93 Aligned_cols=59 Identities=8% Similarity=0.027 Sum_probs=24.3
Q ss_pred HHhcCCCCCHhHHHHHHHHHHcCC-ChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCC
Q 038303 303 MIINAVFPDDVTFIALISACSHGG-LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363 (461)
Q Consensus 303 m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 363 (461)
+.+.|++++..-. .++..+...+ ..-.|.++++.+.+ .+...+..|...-++.+...|-
T Consensus 8 l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~-~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 8 LKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLID-LGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHH-hCCCCCHHHHHHHHHHHHHCCc
Confidence 3444444443322 2233333333 34445555555544 2333333333334444444443
No 344
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=29.10 E-value=1.5e+02 Score=23.91 Aligned_cols=118 Identities=10% Similarity=0.012 Sum_probs=59.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHhH-------HHHHHHHHH--cCCChHHHHHHHHHhHhh--------cCC-CC
Q 038303 285 SGLAMNGCGRQALQLFSLMIINAVFPDDVT-------FIALISACS--HGGLVDQGLILFKAMSTV--------YEI-VP 346 (461)
Q Consensus 285 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~--------~~~-~~ 346 (461)
...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-... ..+ ..
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 89 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDV 89 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCS
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccc
Confidence 344566777777777777766665555332 234443332 567777666666654320 001 01
Q ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHhCCCCchhh----------------HHHHHHHHHHhcCChHHHHHHHH
Q 038303 347 QMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS----------------VWGALLNACRIHRNDEMFDRIRQ 404 (461)
Q Consensus 347 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~----------------~~~~l~~~~~~~~~~~~a~~~~~ 404 (461)
+..-.+.| ...+..|+.+-+.-+++.- ..++.. .-.+.+...+..|+.+-+..+++
T Consensus 90 d~~g~t~L-~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 90 YYRGQTAL-HIAIERRCKHYVELLVEKG-ADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp SEESBCHH-HHHHHTTCHHHHHHHHHTT-CCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred ccCCCCHH-HHHHHcCCHHHHHHHHhCC-CCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 11222233 3344567777666666643 222211 11123334455677777777766
No 345
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=28.80 E-value=2.8e+02 Score=23.88 Aligned_cols=142 Identities=5% Similarity=-0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCChhhHHHHHhcCCCC---chhHHHHHHHHHHh-cCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhc
Q 038303 147 NAILDFYIRCGSLASCGYLFVKMPKR---NVVSWTTMIGGYAE-RGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSS 222 (461)
Q Consensus 147 ~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~ 222 (461)
..++.-|...|+.++|...++++..| ...+...+..++-+ ....+.+..++..+.+.|-+.++...-
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~--------- 85 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQ--------- 85 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHH---------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH---------
Q ss_pred cchhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCC------ChhhHHHHHHHHHhcCChHHH
Q 038303 223 ISALSFGKYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK------DKISWSTVISGLAMNGCGRQA 296 (461)
Q Consensus 223 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a 296 (461)
.-.++++.+....--.|....+-.-+-+.+-....-....++..+.++ .......++..+.+....+.+
T Consensus 86 -----Gf~~~~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl~~vl~~l~~~~g~~~l 160 (339)
T 1ug3_A 86 -----GLYEILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLEILGLLCKSMGPKKV 160 (339)
T ss_dssp -----HHHHHHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHHHHHHHHHHHCHHHH
T ss_pred -----HHHHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHcCHHHH
Q ss_pred HHHHHH
Q 038303 297 LQLFSL 302 (461)
Q Consensus 297 ~~~~~~ 302 (461)
.++|.+
T Consensus 161 ~~~~~~ 166 (339)
T 1ug3_A 161 GTLWRE 166 (339)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 346
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=28.80 E-value=2.1e+02 Score=22.40 Aligned_cols=40 Identities=18% Similarity=0.048 Sum_probs=29.8
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCC
Q 038303 288 AMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327 (461)
Q Consensus 288 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 327 (461)
.+..++|.|+-.+-+|++.|-.|....-..++.+....|.
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 3567899999999999998887776666666666655443
No 347
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=28.79 E-value=92 Score=23.02 Aligned_cols=58 Identities=16% Similarity=0.131 Sum_probs=33.1
Q ss_pred HHHHHhCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCCceeHHHHHHHHHcCCCh
Q 038303 34 AHVIEYGHLHDIFIQNSLLHFYVTVKDIFSAHQIFNSV----VFPDVVSWTTIISGLSKCGFH 92 (461)
Q Consensus 34 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~li~~~~~~~~~ 92 (461)
+.+.+.|.+++.. -..++..+...+..-.|.++++.+ +..+..|--.-++.+...|-+
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 4456667765543 345566666666677777777776 233444444455666666654
No 348
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=28.07 E-value=86 Score=22.66 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhc
Q 038303 25 PHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV 58 (461)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 58 (461)
..-.|.++++.+.+.+...+..|.-.-|..+...
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 66 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAA 66 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHC
Confidence 3444444444444444333333333333333333
No 349
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=27.97 E-value=1.3e+02 Score=19.84 Aligned_cols=61 Identities=11% Similarity=0.130 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcCCCCchhHHHHHHHHHHhcCChH
Q 038303 127 GKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKMPKRNVVSWTTMIGGYAERGFCK 191 (461)
Q Consensus 127 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 191 (461)
...+++.+.+.|+- +..-+..+-. .....++|..+++.+......+|..++.++.+.+...
T Consensus 24 v~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 24 TSYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHH
Confidence 34556666666544 2222222221 2456677888888888777788888888877766543
No 350
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=27.05 E-value=1.8e+02 Score=20.94 Aligned_cols=60 Identities=10% Similarity=0.010 Sum_probs=29.1
Q ss_pred HHhcCCCCCHhHHHHHHHHHHcCC-ChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCH
Q 038303 303 MIINAVFPDDVTFIALISACSHGG-LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLL 364 (461)
Q Consensus 303 m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 364 (461)
+.+.|.+++..-. .++..+...+ ..-.|.++++.+.+ .+...+..|...-++.+...|-.
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~-~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALME-AGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHh-hCCCCCHHHHHHHHHHHHHCCcE
Confidence 4455555554332 2334444444 45566666666655 33334444444445555555543
No 351
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.92 E-value=1.3e+02 Score=19.18 Aligned_cols=60 Identities=8% Similarity=0.030 Sum_probs=32.8
Q ss_pred HHHhcCCCCCHhHHHHHHHHHHcCC-ChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCC
Q 038303 302 LMIINAVFPDDVTFIALISACSHGG-LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGL 363 (461)
Q Consensus 302 ~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 363 (461)
.+.+.|++++..- ..++..+...+ ..-.+.++++.+.+ .+...+..|....+..+.+.|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~-~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLID-MGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHH-hCCCCCHhhHHHHHHHHHHCCC
Confidence 3556666665543 34445554443 45566677777655 3434455555555566655553
No 352
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=26.79 E-value=1e+02 Score=18.08 Aligned_cols=42 Identities=10% Similarity=0.081 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHhcCC--HHHHHHHHhhCCCCC
Q 038303 29 ALEIHAHVIEYGHLHDIFIQNSLLHFYVTVKD--IFSAHQIFNSVVFPD 75 (461)
Q Consensus 29 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~ 75 (461)
-.+.++.+.+.|+.+.. ...++.+.|. ++.|.+.+.+|.-|+
T Consensus 9 n~qmlq~L~eMGFd~er-----ae~Alk~Tg~~Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 9 NRQMLQELVNAGCDQEM-----AGRALKQTGSRSIEAALEYISKMSGPS 52 (54)
T ss_dssp CHHHHHHHHHHHCCHHH-----HHHHHHHHTSCCHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHcCCCHHH-----HHHHHHHhCcccHHHHHHHHHHhcCCC
Confidence 34567778888887642 2344555565 899999998886554
No 353
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=26.61 E-value=42 Score=27.31 Aligned_cols=55 Identities=5% Similarity=-0.224 Sum_probs=35.4
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHhCCCccH-------HHHHHHHHHHHhc---CCHHHHHHHHhhC
Q 038303 16 ALKACSLAHPHQKALEIHAHVIEYGHLHDI-------FIQNSLLHFYVTV---KDIFSAHQIFNSV 71 (461)
Q Consensus 16 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~---~~~~~a~~~~~~~ 71 (461)
.+...++.|+.+....+++.+.+.|..++. .-.+. +...+.. |+.+-+..+++.-
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~-L~~A~~~~~~g~~~~v~~Ll~~g 69 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTC-LMKAVLNLQDGVNACIMPLLQID 69 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCH-HHHHHHTCBTTBCTTHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCH-HHHHHHccccchHHHHHHHHhcC
Confidence 455567889999888888888888766543 22233 3334444 7766666666543
No 354
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=26.05 E-value=1.6e+02 Score=19.97 Aligned_cols=58 Identities=12% Similarity=0.096 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHh----HhhcCCCCCcchHHHH
Q 038303 295 QALQLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAM----STVYEIVPQMQHYACV 354 (461)
Q Consensus 295 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~l 354 (461)
.|.++.+++...|+.|+......++..|...+- + +.++.++. ....|..|+....+.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 467777888888888888888888877765443 1 32222221 1224677776665544
No 355
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=25.77 E-value=2.5e+02 Score=22.25 Aligned_cols=47 Identities=28% Similarity=0.238 Sum_probs=33.8
Q ss_pred HHHHHHH---HhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHcCCC
Q 038303 281 STVISGL---AMNGCGRQALQLFSLMIINAVFPDDVTFIALISACSHGGL 327 (461)
Q Consensus 281 ~~l~~~~---~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 327 (461)
--+|+++ .+..+++.|+-.+-+|++.|-.|....-..++.+....|.
T Consensus 36 Yd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGl 85 (213)
T 3ctd_A 36 FDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGL 85 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 3344444 3568899999999999999888777766666666655543
No 356
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=25.55 E-value=1.7e+02 Score=23.80 Aligned_cols=13 Identities=8% Similarity=-0.028 Sum_probs=6.5
Q ss_pred hcCChHHHHHHHH
Q 038303 392 IHRNDEMFDRIRQ 404 (461)
Q Consensus 392 ~~~~~~~a~~~~~ 404 (461)
..|+.+-+..+++
T Consensus 157 ~~g~~~~v~~Ll~ 169 (273)
T 2pnn_A 157 CTNQLAIVKFLLQ 169 (273)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHh
Confidence 3455555555544
No 357
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=25.45 E-value=68 Score=19.32 Aligned_cols=32 Identities=3% Similarity=0.023 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHH-Hhc
Q 038303 27 QKALEIHAHVIEYGHLHDIFIQNSLLHFY-VTV 58 (461)
Q Consensus 27 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~ 58 (461)
++|...|-+|++..-.++..+|...+... ++.
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRD 35 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCC
Confidence 67888888887765445777888888877 543
No 358
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.37 E-value=2e+02 Score=21.01 Aligned_cols=8 Identities=13% Similarity=0.521 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 038303 193 AVSVFQEM 200 (461)
Q Consensus 193 a~~~~~~m 200 (461)
|.++++.+
T Consensus 40 a~ei~~~l 47 (145)
T 2fe3_A 40 ADDIYKAL 47 (145)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 359
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=25.36 E-value=2.4e+02 Score=21.96 Aligned_cols=19 Identities=11% Similarity=-0.230 Sum_probs=9.6
Q ss_pred HHHhhccchhhhHHHHHHH
Q 038303 217 LSACSSISALSFGKYVHSY 235 (461)
Q Consensus 217 l~~~~~~~~~~~a~~~~~~ 235 (461)
+...+..|+.+....++..
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3344445555555555544
No 360
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=25.18 E-value=3.4e+02 Score=23.65 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=13.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCC
Q 038303 352 ACVVDMYGRAGLLEEAEAFIREMP 375 (461)
Q Consensus 352 ~~l~~~~~~~g~~~~A~~~~~~~~ 375 (461)
..++.-|...|+.++|.+.+++++
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHhccCCCHHHHHHHHHHcc
Confidence 445555555566666666666653
No 361
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=24.69 E-value=2.3e+02 Score=21.42 Aligned_cols=47 Identities=2% Similarity=-0.037 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHh
Q 038303 192 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST 238 (461)
Q Consensus 192 ~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~ 238 (461)
.+.++|..|..+|-..--+..|......+...|++..|..+|..-.+
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ 124 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35566777766662223333444444444444555555555554444
No 362
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=24.50 E-value=1.3e+02 Score=24.14 Aligned_cols=118 Identities=9% Similarity=0.036 Sum_probs=59.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCH-------hHHHHHHHHHHc--CCChHHHHHHHHHhHhhcCCC---------
Q 038303 284 ISGLAMNGCGRQALQLFSLMIINAVFPDD-------VTFIALISACSH--GGLVDQGLILFKAMSTVYEIV--------- 345 (461)
Q Consensus 284 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~--------- 345 (461)
+...++.|+.+....+++.+.+.|..++. ...+.|..++.. .|+.+-+..+++.-.......
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 85 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTD 85 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccccc
Confidence 34445667777777777777766655443 233344443322 277776666666544311011
Q ss_pred CCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCchhh----------------HHHHHHHHHHhcCChHHHHHHHH
Q 038303 346 PQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS----------------VWGALLNACRIHRNDEMFDRIRQ 404 (461)
Q Consensus 346 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~----------------~~~~l~~~~~~~~~~~~a~~~~~ 404 (461)
.+..-.+.| ...+..|+.+-+..+++.- ..++.. -.+. +...+..|+.+-+..+++
T Consensus 86 ~d~~g~t~L-~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~~g~tp-L~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 86 EFYQGHSAL-HIAIEKRSLQCVKLLVENG-ADVHLRACGRFFQKHQGTCFYFGELP-LSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp TTTTTCCHH-HHHHHTTCHHHHHHHHHTT-CCTTCCCCSGGGSCCSSSCCCSCSSH-HHHHHHTTCHHHHHHHHH
T ss_pred ccccCCCHH-HHHHHcCCHHHHHHHHHcC-CCCCcccccccccccccccccCCCCH-HHHHHHcCCHHHHHHHHh
Confidence 111222233 3344567777666666653 121111 1223 333445677777777766
No 363
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=24.06 E-value=1.3e+02 Score=18.49 Aligned_cols=48 Identities=6% Similarity=-0.056 Sum_probs=38.4
Q ss_pred chHHHHHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcC
Q 038303 11 YTFTQALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTVK 59 (461)
Q Consensus 11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 59 (461)
..++.++..++...-+++++..++++.+.|. .+...|..-.+.+++..
T Consensus 3 pl~~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~LaReQ 50 (65)
T 2f6m_A 3 DGLNQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRELARQQ 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHH
Confidence 3577888888888889999999999999985 57777777777766543
No 364
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=23.94 E-value=1e+02 Score=22.76 Aligned_cols=12 Identities=17% Similarity=0.473 Sum_probs=5.4
Q ss_pred CHHHHHHHHhhC
Q 038303 60 DIFSAHQIFNSV 71 (461)
Q Consensus 60 ~~~~a~~~~~~~ 71 (461)
..-.|.++++.+
T Consensus 32 ~h~sa~ei~~~l 43 (150)
T 2w57_A 32 QHISAEELYKKL 43 (150)
T ss_dssp SSEEHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 334444444444
No 365
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=23.47 E-value=2.3e+02 Score=22.06 Aligned_cols=189 Identities=8% Similarity=-0.030 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHhhcCCCC-cchHHHHHHHHHHhc
Q 038303 181 IGGYAERGFCKEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYISTRYDLSV-SNLVGNAVINMYVKC 259 (461)
Q Consensus 181 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~ 259 (461)
+...++.|+.+.+..+++.-... .......-.+.+...+..|+.+.+..+++.-.. ..... ......+.+...+..
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~~~~g~t~L~~A~~~ 82 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSL--LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN-VNLDDYPDDSGWTPFHIACSV 82 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGG--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTT-CCGGGCCCTTSCCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcCccc--cccCCCCCCCHHHHHHHcCCHHHHHHHHhcccc-ccccccCCCCCCCHHHHHHHc
Q ss_pred CCHHHHHHHHHHc-----cCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH--hHHHHHHHHHHcCCChHHHH
Q 038303 260 GDVGIAIQVFNML-----AYKDKISWSTVISGLAMNGCGRQALQLFSLMIINAVFPDD--VTFIALISACSHGGLVDQGL 332 (461)
Q Consensus 260 g~~~~a~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~ 332 (461)
|+.+-+..+++.- ...+..-.+.+..+..... .++++.+.+.|..++. ..-.+.+...+..|+.+-+.
T Consensus 83 ~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 157 (228)
T 2dzn_A 83 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKW-----FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE 157 (228)
T ss_dssp CCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTC-----HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCC-----HhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHH
Q ss_pred HHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhCCCCch
Q 038303 333 ILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREMPIEAE 379 (461)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~ 379 (461)
.+++.-.. .+......-.+.+...+..|+.+-+..++++.+..++
T Consensus 158 ~Ll~~g~~--~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~ 202 (228)
T 2dzn_A 158 LLCGLGKS--AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202 (228)
T ss_dssp HHHTTTCC--CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSC
T ss_pred HHHhcCcc--cccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCC
No 366
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=22.38 E-value=2.2e+02 Score=20.40 Aligned_cols=17 Identities=6% Similarity=-0.015 Sum_probs=8.3
Q ss_pred HHHhhCCHHHHHHHHHH
Q 038303 19 ACSLAHPHQKALEIHAH 35 (461)
Q Consensus 19 ~~~~~~~~~~a~~~~~~ 35 (461)
..++.|+.+.+..+++.
T Consensus 8 ~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 8 GAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHh
Confidence 34445555555554444
No 367
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=22.12 E-value=2.8e+02 Score=21.45 Aligned_cols=177 Identities=12% Similarity=-0.000 Sum_probs=0.0
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHhCCCccHHHHH--HHHHHHHhcCCHHHHHHHHhhC---CCCCceeHHHHHHHHHcCC
Q 038303 16 ALKACSLAHPHQKALEIHAHVIEYGHLHDIFIQN--SLLHFYVTVKDIFSAHQIFNSV---VFPDVVSWTTIISGLSKCG 90 (461)
Q Consensus 16 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~~ 90 (461)
.+...+..|+ .++++.+.+.|..++..... +.+...+..|+.+-+..+++.- .......-.+.+...+..|
T Consensus 28 ~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~ 103 (223)
T 2f8y_A 28 ALHLAARYSR----SDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 103 (223)
T ss_dssp HHHHHHHTTC----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHT
T ss_pred hHHHHHHcCC----HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhC
Q ss_pred ChHHHHHHHhcC-CCCCCchhHHHHHHHhcccchhHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhhHHHHHhcC
Q 038303 91 FHKEAIDMFCGI-DVKPNANTLVSVLSACSSLVSHKLGKAIHAHSLRNLNENNIILDNAILDFYIRCGSLASCGYLFVKM 169 (461)
Q Consensus 91 ~~~~a~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 169 (461)
+.+-...+++.- .+......-.+.+...+..|+.+.+..+++. ...+......-.+.+...++.|+.+-+..+++.-
T Consensus 104 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 181 (223)
T 2f8y_A 104 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN--GANKDMQNNREETPLFLAAREGSYETAKVLLDHF 181 (223)
T ss_dssp CHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred cHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcC
Q ss_pred CCCchhHHH--HHHHHHHhcCChHHHHHHHH
Q 038303 170 PKRNVVSWT--TMIGGYAERGFCKEAVSVFQ 198 (461)
Q Consensus 170 ~~~~~~~~~--~li~~~~~~~~~~~a~~~~~ 198 (461)
..++..... +-+....+.|+.+-+.-+++
T Consensus 182 a~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~ 212 (223)
T 2f8y_A 182 ANRDITDHMDRLPRDIAQERMHHDIVRLLDE 212 (223)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCccccccCCCHHHHHHHhcchHHHHHHHH
No 368
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=22.11 E-value=1.9e+02 Score=23.82 Aligned_cols=86 Identities=6% Similarity=-0.135 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHh---------CC-CccHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCc---eeH
Q 038303 13 FTQALKACSLAHPHQKALEIHAHVIEY---------GH-LHDIFIQNSLLHFYVTVKDIFSAHQIFNSVVFPDV---VSW 79 (461)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~---------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~ 79 (461)
..+.+...+..|+.++..++....... ++ ..+..- .+.+...+..|+.+-+..+++.-..++. ..+
T Consensus 15 ~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g-~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~ 93 (285)
T 3d9h_A 15 VPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSD-WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHV 93 (285)
T ss_dssp ---------------------------CCSEECCCCTTCSSSCCS-CCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCC
T ss_pred HHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccC-CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence 445566667777776666654433221 00 011111 1334455667777777777765433222 222
Q ss_pred HHHHHHHHcCCChHHHHHHHh
Q 038303 80 TTIISGLSKCGFHKEAIDMFC 100 (461)
Q Consensus 80 ~~li~~~~~~~~~~~a~~~~~ 100 (461)
+.| ...+..|+.+-+.-+++
T Consensus 94 t~L-~~A~~~g~~~~v~~Ll~ 113 (285)
T 3d9h_A 94 SPL-HEACLGGHLSCVKILLK 113 (285)
T ss_dssp CHH-HHHHHTTCHHHHHHHHH
T ss_pred CHH-HHHHHCCcHHHHHHHHH
Confidence 333 33345566655444444
No 369
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=22.07 E-value=1.8e+02 Score=25.09 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHhHh
Q 038303 298 QLFSLMIINAVFPDDVTFIALISACSHGGLVDQGLILFKAMST 340 (461)
Q Consensus 298 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 340 (461)
++++.+.+.|+.|...++..++..+.+.=.++.+..+|+.+..
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~ 256 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCR 256 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 3556667778888888888888888877788888888888877
No 370
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=21.61 E-value=1.1e+02 Score=22.35 Aligned_cols=33 Identities=15% Similarity=0.068 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhc
Q 038303 26 HQKALEIHAHVIEYGHLHDIFIQNSLLHFYVTV 58 (461)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 58 (461)
.-.|.++++.+.+.+...+..|.-.-|..+...
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 65 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEEL 65 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHC
Confidence 344445555544444333333333333333333
No 371
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=21.22 E-value=6.5e+02 Score=25.40 Aligned_cols=78 Identities=8% Similarity=-0.082 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHhh---cCCCCcchHHHHHHHHHHhcCCHHHHHHHHHHccCC-ChhhHHHHHHHHHhcCChHHHHHHHHH
Q 038303 227 SFGKYVHSYISTR---YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DKISWSTVISGLAMNGCGRQALQLFSL 302 (461)
Q Consensus 227 ~~a~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 302 (461)
+.|.+.|+..... ..++|+.. ..+...-.+.|..++-..+++..... +..--..++.+++...+.+...++++.
T Consensus 706 ~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~~~~ek~~ll~aL~~~~d~~~l~~~L~~ 783 (909)
T 4fke_A 706 NLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALACSNEVWLLNRYLGY 783 (909)
T ss_dssp HHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCCSHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4455555555441 12444433 33333344556666655566665543 334456677778777787777777776
Q ss_pred HHhc
Q 038303 303 MIIN 306 (461)
Q Consensus 303 m~~~ 306 (461)
....
T Consensus 784 ~l~~ 787 (909)
T 4fke_A 784 TLNP 787 (909)
T ss_dssp TTCT
T ss_pred HhCC
Confidence 6543
No 372
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=20.66 E-value=2.2e+02 Score=19.85 Aligned_cols=74 Identities=8% Similarity=-0.078 Sum_probs=35.1
Q ss_pred ChHHHHHHHHHhHhhcCCCCCcchHHHHHHHHhhcCCHHHHHHHHHhC----CCCchhhHHHHHHHHHHhcCChHHHHHH
Q 038303 327 LVDQGLILFKAMSTVYEIVPQMQHYACVVDMYGRAGLLEEAEAFIREM----PIEAEWSVWGALLNACRIHRNDEMFDRI 402 (461)
Q Consensus 327 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 402 (461)
++.+|+.-+++... .++|......++..+..+ ++.|.++.+.. +. .+.++.-.+....+.|-.+.. +.
T Consensus 3 ~~~~al~~L~e~~~---~~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~ 74 (119)
T 1wty_A 3 SLARAVERLKAALE---RPKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PF 74 (119)
T ss_dssp CHHHHHHHHHHHHS---SCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HH
T ss_pred HHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HH
Confidence 45566666666644 234544555555544332 23333333322 43 244455555555555555444 34
Q ss_pred HHHHhh
Q 038303 403 RQDLVN 408 (461)
Q Consensus 403 ~~~~~~ 408 (461)
|..|.+
T Consensus 75 w~~m~~ 80 (119)
T 1wty_A 75 WLEMLE 80 (119)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 373
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=20.57 E-value=3.3e+02 Score=21.80 Aligned_cols=48 Identities=10% Similarity=-0.000 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhcCCCCCChhhHHHHHHHhhccchhhhHHHHHHHHHh
Q 038303 191 KEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGKYVHSYIST 238 (461)
Q Consensus 191 ~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~ 238 (461)
+.+.++|..|..+|...--+..|......+...|++..|..+|..-.+
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKR 178 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566666666652222333344444444444444444444444443
Done!