BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038304
         (214 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZXU|A Chain A, X-Ray Structure Of Protein From Arabidopsis Thaliana
           At5g01750
 pdb|2Q4M|A Chain A, Ensemble Refinement Of The Crystal Structure Of Protein
           From Arabidopsis Thaliana At5g01750
          Length = 217

 Score =  234 bits (597), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 103/188 (54%), Positives = 141/188 (75%)

Query: 25  IIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLDPYDN 84
           ++ P+YC PYP+D AIVRK  S+TDG FV+ D+  NL+FKVKE +  LH +R +LD    
Sbjct: 27  VVDPKYCAPYPIDXAIVRKXXSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGT 86

Query: 85  PIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASNNKQDVCDF 144
           P+VT+ +K +S H++  VFRG STD +DLL+TV +S  +QLKT L+V+L  N  +  CDF
Sbjct: 87  PVVTLREKXVSXHDRWQVFRGGSTDQRDLLYTVKRSSXLQLKTKLDVFLGHNKDEKRCDF 146

Query: 145 KIKGSWLERSCIFYAGESKAIVAQMQKRITAGSVMLDKDRYTVTVYPNIDYAFVVALIVI 204
           ++KGSWLERSC+ YAGES AIVAQ  ++ T  SV L KD ++VTVYPN+DYAF+ +L+VI
Sbjct: 147 RVKGSWLERSCVVYAGESDAIVAQXHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLVVI 206

Query: 205 LDEINNDD 212
           LD++N +D
Sbjct: 207 LDDVNRED 214


>pdb|2W21|A Chain A, Crystal Structure Of The Aminoacid Kinase Domain Of The
           Glutamate 5 Kinase Of Escherichia Coli
          Length = 259

 Score = 29.6 bits (65), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 66  KEKLISLHKRRTVLDPYDNPIVTVTKKLISAHEKH--YVFRGNSTDSKDLLFTVGKSKMI 123
           +  ++ L ++   L    + IV VT   I+A  +H  Y     +  SK LL  VG+S++I
Sbjct: 25  RAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLI 84

Query: 124 QL 125
           QL
Sbjct: 85  QL 86


>pdb|2J5V|A Chain A, Glutamate 5-kinase From Escherichia Coli Complexed With
           Glutamyl-5-phosphate And Pyroglutamic Acid
 pdb|2J5V|B Chain B, Glutamate 5-kinase From Escherichia Coli Complexed With
           Glutamyl-5-phosphate And Pyroglutamic Acid
 pdb|2J5T|H Chain H, Glutamate 5-Kinase From Escherichia Coli Complexed With
           Glutamate
 pdb|2J5T|A Chain A, Glutamate 5-Kinase From Escherichia Coli Complexed With
           Glutamate
 pdb|2J5T|B Chain B, Glutamate 5-Kinase From Escherichia Coli Complexed With
           Glutamate
 pdb|2J5T|C Chain C, Glutamate 5-Kinase From Escherichia Coli Complexed With
           Glutamate
 pdb|2J5T|D Chain D, Glutamate 5-Kinase From Escherichia Coli Complexed With
           Glutamate
 pdb|2J5T|E Chain E, Glutamate 5-Kinase From Escherichia Coli Complexed With
           Glutamate
 pdb|2J5T|F Chain F, Glutamate 5-Kinase From Escherichia Coli Complexed With
           Glutamate
 pdb|2J5T|G Chain G, Glutamate 5-Kinase From Escherichia Coli Complexed With
           Glutamate
          Length = 367

 Score = 29.6 bits (65), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 66  KEKLISLHKRRTVLDPYDNPIVTVTKKLISAHEKH--YVFRGNSTDSKDLLFTVGKSKMI 123
           +  ++ L ++   L    + IV VT   I+A  +H  Y     +  SK LL  VG+S++I
Sbjct: 25  RAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLI 84

Query: 124 QL 125
           QL
Sbjct: 85  QL 86


>pdb|3US7|A Chain A, Crystal Structure Of Phytohormone Binding Protein From
           Medicago Truncatula In Complex With Gibberellic Acid
           (Ga3)
          Length = 156

 Score = 28.1 bits (61), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 23/107 (21%), Positives = 51/107 (47%), Gaps = 7/107 (6%)

Query: 55  NDIADNLMFKVKEKLISLHKRRTVLDPYDNPIVTVTKKLISAHEKHYVFRGNSTDSKDLL 114
             +   L+F     +  ++ +R V+  YD    T+  +++   E  Y+ +G S       
Sbjct: 48  GGVGTKLIFNFLPGIAPVNYQREVITEYDELSHTIGLQVV---EGGYLNQGLSYYKTTFQ 104

Query: 115 FTVGKSKMIQLKTTLNVYLASNNKQDVCDFKIKGSWLERSCIFYAGE 161
           F    S + + KT +NV ++ +++ ++ + K+K +    S +FY G+
Sbjct: 105 F----SAISENKTLVNVKISYDHESELIEEKVKPTKTSESTLFYLGQ 147


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,342,108
Number of Sequences: 62578
Number of extensions: 242821
Number of successful extensions: 484
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 482
Number of HSP's gapped (non-prelim): 7
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)