Query 038304
Match_columns 214
No_of_seqs 109 out of 511
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 16:30:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038304.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038304hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zxu_A AT5G01750 protein; PFAM 100.0 1.2E-46 4.2E-51 312.4 20.1 199 15-213 17-215 (217)
2 1zxu_A AT5G01750 protein; PFAM 98.1 4.3E-05 1.5E-09 62.4 12.0 99 57-160 34-136 (217)
3 2v2f_A Penicillin binding prot 52.2 8.5 0.00029 19.8 1.9 13 53-65 8-20 (26)
4 3c5n_A Tubby-related protein 1 47.3 1.1E+02 0.0039 24.7 11.4 90 96-189 30-135 (246)
5 2fim_A Tubby related protein 1 36.9 1.8E+02 0.0061 24.0 12.6 89 83-174 37-145 (276)
6 3osv_A Flagellar basal-BODY RO 34.3 44 0.0015 24.4 4.1 16 51-66 40-55 (138)
7 1nnx_A Protein YGIW; structura 29.5 51 0.0018 23.4 3.5 21 74-94 53-73 (109)
8 3u88_M Histone-lysine N-methyl 28.4 35 0.0012 22.0 2.2 18 187-204 28-45 (75)
9 3dzw_A Agglutinin; lectin, man 27.6 1.3E+02 0.0045 20.5 5.5 9 49-57 28-36 (109)
10 1hzt_A Isopentenyl diphosphate 26.9 60 0.0021 24.3 3.8 56 50-105 4-68 (190)
11 2dho_A Isopentenyl-diphosphate 26.6 1.1E+02 0.0038 24.2 5.5 55 49-103 26-92 (235)
12 2vnl_A Bifunctional tail prote 26.2 85 0.0029 23.6 4.3 55 30-90 49-103 (151)
13 3r0e_B Lectin; carbohydrate bi 23.6 1.6E+02 0.0056 20.1 5.4 7 50-56 34-40 (110)
14 4he6_A Peptidase family U32; u 23.2 85 0.0029 20.8 3.6 31 58-89 19-50 (89)
15 3oe3_A Putative periplasmic pr 23.1 1.3E+02 0.0046 20.8 4.6 41 42-88 44-84 (98)
16 3mez_B Mannose-specific lectin 21.9 1.7E+02 0.0058 20.1 5.2 16 48-63 32-48 (113)
17 2pny_A Isopentenyl-diphosphate 21.6 1.1E+02 0.0039 24.4 4.7 54 49-102 37-102 (246)
18 3c12_A FLGD, flagellar protein 21.5 1.1E+02 0.0038 22.1 4.2 15 52-66 43-57 (138)
19 4h3o_A Lectin; cadmium, plant 20.2 2.1E+02 0.0072 19.4 5.6 14 74-87 61-74 (105)
No 1
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=100.00 E-value=1.2e-46 Score=312.43 Aligned_cols=199 Identities=53% Similarity=0.972 Sum_probs=152.0
Q ss_pred CCCCCCCceeeecCCCcCCcceEEEEEEeeeeecCCCeEEEcCCCCEEEEEEccCCCCCceEEEECCCCCcEEEEEeccc
Q 038304 15 SPEIYTRPYPIIGPQYCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLDPYDNPIVTVTKKLI 94 (214)
Q Consensus 15 ~~~~~~~p~~vV~~~~~~~~~~~l~ik~k~~s~~~~~f~I~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~i~~k~~ 94 (214)
.++|+++|++||+++||++++++|+||||.+++++++|+|+|++|+++|+|+++.++++.++.|+|++|++|++|++|.+
T Consensus 17 ~~~~~~~~~~vv~~~~~~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~~~~~~~~~~~l~D~~G~~l~~i~rk~~ 96 (217)
T 1zxu_A 17 GAPTPQAGGVVVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLREKMV 96 (217)
T ss_dssp -------CCCSSCGGGBCSSCEEEEEECC-----CCCEEEEETTSCEEEEEECSSTTCCSEEEEECTTSCEEEEEEC---
T ss_pred CCCCCCCcEEEECccccCCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEccccCCCCEEEEECCCCCEEEEEEcccc
Confidence 45667789999999999999999999999999998899999999999999999988999999999999999999999999
Q ss_pred cccceeEEEECCCCCCCceEEEEEeeecccCCceEEEEEccCCCCceeeEEEEceeecceEEEEeCCCCcEEEEEEeeee
Q 038304 95 SAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASNNKQDVCDFKIKGSWLERSCIFYAGESKAIVAQMQKRIT 174 (214)
Q Consensus 95 s~~~~w~v~~~~~~~~~~~l~~ikk~~~~~~k~~~~V~~~~~~~~~~~~~~v~G~~~~~~~~I~~~~~~~~VA~I~rk~~ 174 (214)
+++++|++|.+++.+.+++++++++++.+.++++++|++.++..++.+.|+|+|+|++++|+|+++++|+.||+|+|+|+
T Consensus 97 ~~~~~~~v~~~~~~~~~~~i~~vrk~~~~~~~~~~~V~~~~~~~~~~~~~~I~G~~~~~~f~I~~~~~~~~Va~I~kk~~ 176 (217)
T 1zxu_A 97 SMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHT 176 (217)
T ss_dssp ---CEEEEEETTCCCGGGEEEEEEC-------CCEEEEETTCCC-CCCSEEEESCTTTTCCEEEETTTCCEEEEEEEC--
T ss_pred ccCcEEEEEcCCCCCCCcEEEEEEEeccccCCCeEEEEECCCCCCCceEEEEEEeEeCCEEEEEECCCCEEEEEEEeeee
Confidence 99999999998755445689999977534479999999987554456799999999999999999865799999999998
Q ss_pred cceeeeecceEEEEEeCCCCHHHHHHHHHhhhccccCCC
Q 038304 175 AGSVMLDKDRYTVTVYPNIDYAFVVALIVILDEINNDDD 213 (214)
Q Consensus 175 ~~~~~~~~dtY~v~V~pgvD~alv~alvv~lD~i~~~~~ 213 (214)
+++++.++|+|.|+|.||+|.+|+||+|++||+++.+++
T Consensus 177 ~~~~~~~~D~y~l~V~p~~D~aliialvv~iD~~~~~~~ 215 (217)
T 1zxu_A 177 VQSVFLGKDNFSVTVYPNVDYAFIASLVVILDDVNREDR 215 (217)
T ss_dssp ------CBCSEEEEECTTSBHHHHHHHHHHHHHHHC---
T ss_pred ccccccCCcEEEEEECCCCCHHHHHHHHHHHHHhhhhcc
Confidence 888899999999999999999999999999999998875
No 2
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=98.09 E-value=4.3e-05 Score=62.39 Aligned_cols=99 Identities=17% Similarity=0.292 Sum_probs=67.0
Q ss_pred CCCCEEEEEEccCCCCCc-eEEEECCCCCcEEEEEeccccccceeEEEECCCCCCCceEEEEEeeecccCCceEEEEEcc
Q 038304 57 IADNLMFKVKEKLISLHK-RRTVLDPYDNPIVTVTKKLISAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLAS 135 (214)
Q Consensus 57 ~~G~~vf~V~g~~~s~~~-~~~l~D~~G~~L~~i~~k~~s~~~~w~v~~~~~~~~~~~l~~ikk~~~~~~k~~~~V~~~~ 135 (214)
+.+...|.|+.+.+++.. +..|+|.+|+.++.+..+.+++..++.++... ++++++++++ .+.+.++|+|+..+
T Consensus 34 ~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~~~~~~~~~~~l~D~~----G~~l~~i~rk-~~~~~~~~~v~~~~ 108 (217)
T 1zxu_A 34 APYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGS----GTPVVTLREK-MVSMHDRWQVFRGG 108 (217)
T ss_dssp CSSCEEEEEECC-----CCCEEEEETTSCEEEEEECSSTTCCSEEEEECTT----SCEEEEEEC-------CEEEEEETT
T ss_pred CCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEccccCCCCEEEEECCC----CCEEEEEEcc-ccccCcEEEEEcCC
Confidence 468999999999888876 99999999999999999988888888888654 6899999975 44568999998765
Q ss_pred CCCCceeeEEEEce--e-ecceEEEEeC
Q 038304 136 NNKQDVCDFKIKGS--W-LERSCIFYAG 160 (214)
Q Consensus 136 ~~~~~~~~~~v~G~--~-~~~~~~I~~~ 160 (214)
...+..+-++|+-. | +...|.|..+
T Consensus 109 ~~~~~~~i~~vrk~~~~~~~~~~~V~~~ 136 (217)
T 1zxu_A 109 STDQRDLLYTVKRSSMLQLKTKLDVFLG 136 (217)
T ss_dssp CCCGGGEEEEEEC-------CCEEEEET
T ss_pred CCCCCcEEEEEEEeccccCCCeEEEEEC
Confidence 32122345666544 2 3456788765
No 3
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=52.23 E-value=8.5 Score=19.83 Aligned_cols=13 Identities=15% Similarity=0.281 Sum_probs=11.1
Q ss_pred EEEcCCCCEEEEE
Q 038304 53 VVNDIADNLMFKV 65 (214)
Q Consensus 53 ~I~D~~G~~vf~V 65 (214)
.|||.+|+++.++
T Consensus 8 ~IYD~~g~~i~~l 20 (26)
T 2v2f_A 8 KIYDNKNQLIADL 20 (26)
T ss_pred EEEeCCCCEeeec
Confidence 6899999988877
No 4
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=47.28 E-value=1.1e+02 Score=24.75 Aligned_cols=90 Identities=12% Similarity=0.102 Sum_probs=49.6
Q ss_pred ccceeEEEECCCCCCCceEEEEEeeecccCCceEEEEEccCC---CCceeeEEEEceeecceEEEEeCCC----------
Q 038304 96 AHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASNN---KQDVCDFKIKGSWLERSCIFYAGES---------- 162 (214)
Q Consensus 96 ~~~~w~v~~~~~~~~~~~l~~ikk~~~~~~k~~~~V~~~~~~---~~~~~~~~v~G~~~~~~~~I~~~~~---------- 162 (214)
+-++|..|..++ .+..|...+|.+ ..-...+.|.+.... .+...-=+|+-|+++..|+|++.+.
T Consensus 30 ~yp~y~l~~~~~--~~~fLlaark~~-~~~~s~YiIS~d~~dlsr~s~~yvGKLrsNf~Gt~F~iyD~g~~p~~~~s~~~ 106 (246)
T 3c5n_A 30 MYPSYFLHLDTE--KKVFLLAGRKRK-RSKTANYLISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNV 106 (246)
T ss_dssp CCCEEEEEESSS--SCCEEEEEEECT-TCSSCEEEEESCTTC------CEEEEEEECSSSSEEEEECSCBCGGGCTTSCG
T ss_pred CceEEEEEEeCC--CcEEEEeeeecc-CCCCceEEEEeCccccccCCceEEEEEEEccCCCEEEEECCCCCcccccCccc
Confidence 346788887642 234555656442 222456777765321 1122334568899999999998621
Q ss_pred ---CcEEEEEEeeeecceeeeecceEEEEE
Q 038304 163 ---KAIVAQMQKRITAGSVMLDKDRYTVTV 189 (214)
Q Consensus 163 ---~~~VA~I~rk~~~~~~~~~~dtY~v~V 189 (214)
.+.+|.|.-+.+... ..+.-...+.+
T Consensus 107 ~~~r~el~~v~Ye~n~l~-~~gPR~m~v~i 135 (246)
T 3c5n_A 107 ASLRQELAAVIYETNVLG-FRGPRRMTVII 135 (246)
T ss_dssp GGBCCEEEEEEECCCCCC----CCCEEEEE
T ss_pred ccccEEEEEEEEEecccC-CCCCeEEEEEe
Confidence 178899988764211 12333455554
No 5
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=36.87 E-value=1.8e+02 Score=24.02 Aligned_cols=89 Identities=10% Similarity=0.099 Sum_probs=50.2
Q ss_pred CCcEEEEEecc--c--cccceeEEEECCCCCCCceEEEEEeeecccCCceEEEEEccCC---CCceeeEEEEceeecceE
Q 038304 83 DNPIVTVTKKL--I--SAHEKHYVFRGNSTDSKDLLFTVGKSKMIQLKTTLNVYLASNN---KQDVCDFKIKGSWLERSC 155 (214)
Q Consensus 83 G~~L~~i~~k~--~--s~~~~w~v~~~~~~~~~~~l~~ikk~~~~~~k~~~~V~~~~~~---~~~~~~~~v~G~~~~~~~ 155 (214)
+-.-+.|++.. + .+.++|..|..+ +.+..|...+|.+ ..-...+.|++.... .+...-=+|+-||++..|
T Consensus 37 ~~iqC~I~R~k~g~~~g~yp~y~L~l~~--~~~~fLLaarK~k-~~~ts~YiIS~d~~dlsr~s~~yvGKLrSNflGtkF 113 (276)
T 2fim_A 37 RTVRCRLTRDKKGMDRGMYPSYFLHLDT--EKKVFLLAGRKRK-RSKTANYLISIDPTNLSRGGENFIGKLRSNLLGNRF 113 (276)
T ss_dssp CCEEEEEEEEC-------CCEEEEEECS--SSCEEEEEEEECT-TCSSCEEEEESCTTC------CEEEEEEECSSSSEE
T ss_pred CeEEEEEEEeCCCCCCCCceEEEEEEeC--CCCEEEEEEEecc-CCCCceEEEEecchhcccCCceEEEEEEEccCCCEE
Confidence 34445554422 1 234788888864 2245566666542 223467778765321 112233456889999999
Q ss_pred EEEeCCC-------------CcEEEEEEeeee
Q 038304 156 IFYAGES-------------KAIVAQMQKRIT 174 (214)
Q Consensus 156 ~I~~~~~-------------~~~VA~I~rk~~ 174 (214)
+||+.+. .+.+|.|.-+.+
T Consensus 114 ~iyD~G~~p~~~~s~~~~~~r~el~~V~Ye~n 145 (276)
T 2fim_A 114 TVFDNGQNPQRGYSTNVASLRQELAAVIYETN 145 (276)
T ss_dssp EEECSSBCGGGCTTSCGGGBCCEEEEEEEC--
T ss_pred EEECCCCCcccccCcccccccEEEEEEEEEec
Confidence 9998731 278888887754
No 6
>3osv_A Flagellar basal-BODY ROD modification protein FLG; FLGD, flagellum, P. aeruginosa, structural protein; 2.35A {Pseudomonas aeruginosa}
Probab=34.33 E-value=44 Score=24.37 Aligned_cols=16 Identities=13% Similarity=0.094 Sum_probs=10.9
Q ss_pred CeEEEcCCCCEEEEEE
Q 038304 51 TFVVNDIADNLMFKVK 66 (214)
Q Consensus 51 ~f~I~D~~G~~vf~V~ 66 (214)
..+|+|++|++|.+++
T Consensus 40 ~v~I~d~~G~~V~t~~ 55 (138)
T 3osv_A 40 WVNVYDDKGTVVNRIN 55 (138)
T ss_dssp EEEEECTTSCEEEEEE
T ss_pred EEEEEcCCCCEEEEEE
Confidence 4567777777777765
No 7
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=29.53 E-value=51 Score=23.41 Aligned_cols=21 Identities=14% Similarity=-0.012 Sum_probs=11.9
Q ss_pred ceEEEECCCCCcEEEEEeccc
Q 038304 74 KRRTVLDPYDNPIVTVTKKLI 94 (214)
Q Consensus 74 ~~~~l~D~~G~~L~~i~~k~~ 94 (214)
.++.+.|.+|...+.|.++.|
T Consensus 53 d~Y~F~D~TG~I~VeId~~~w 73 (109)
T 1nnx_A 53 DLYVFKDASGTINVDIDHKRW 73 (109)
T ss_dssp TEEEEEETTEEEEEECCGGGS
T ss_pred CeEEEECCCccEEEEEChhhc
Confidence 345666666665555555543
No 8
>3u88_M Histone-lysine N-methyltransferase MLL; menin, MEN1, MLL, JUND, ledgf, TPR, transcription; HET: CHD 0BR GGB; 3.00A {Homo sapiens}
Probab=28.41 E-value=35 Score=22.03 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=14.9
Q ss_pred EEEeCCCCHHHHHHHHHh
Q 038304 187 VTVYPNIDYAFVVALIVI 204 (214)
Q Consensus 187 v~V~pgvD~alv~alvv~ 204 (214)
+-|.||+|.||-+..+|-
T Consensus 28 lgvgpGFDAALqvSa~Ig 45 (75)
T 3u88_M 28 LRVGPGFDAALQVSAAIG 45 (75)
T ss_dssp CEECCCCCHHHHHHHHHH
T ss_pred HccCcChhHHHHHHHHHH
Confidence 568999999998877764
No 9
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A*
Probab=27.57 E-value=1.3e+02 Score=20.50 Aligned_cols=9 Identities=33% Similarity=0.623 Sum_probs=5.3
Q ss_pred CCCeEEEcC
Q 038304 49 DGTFVVNDI 57 (214)
Q Consensus 49 ~~~f~I~D~ 57 (214)
++++.+++.
T Consensus 28 dGnLvly~~ 36 (109)
T 3dzw_A 28 DCNLVLYDV 36 (109)
T ss_dssp TSCEEEEET
T ss_pred CCcEEEEeC
Confidence 456666654
No 10
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=26.92 E-value=60 Score=24.29 Aligned_cols=56 Identities=7% Similarity=-0.093 Sum_probs=18.6
Q ss_pred CCeEEEcCCCCEEEEEEccCCC-------CCceEEEECCCCCcEEEEEecc-ccccceeEE-EEC
Q 038304 50 GTFVVNDIADNLMFKVKEKLIS-------LHKRRTVLDPYDNPIVTVTKKL-ISAHEKHYV-FRG 105 (214)
Q Consensus 50 ~~f~I~D~~G~~vf~V~g~~~s-------~~~~~~l~D~~G~~L~~i~~k~-~s~~~~w~v-~~~ 105 (214)
+-+.|+|.+|+.+..+.-.... ..-...+.+.+|+.|+.-|... -.+...|.. --|
T Consensus 4 E~~~v~d~~~~~~g~~~r~~~~~~~~~~~~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~~PgG 68 (190)
T 1hzt_A 4 EHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCG 68 (190)
T ss_dssp ---------------------------CEECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEE
T ss_pred eEEEEECCCCCEeeeEEHhhhcccCCceEEEEEEEEEcCCCEEEEEEeCCCCCCCCCcccCcccc
Confidence 3578999999988876553322 1123467788888776544322 223567876 444
No 11
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=26.60 E-value=1.1e+02 Score=24.21 Aligned_cols=55 Identities=11% Similarity=0.004 Sum_probs=34.5
Q ss_pred CCCeEEEcCCCCEEEEEEccCC--------CCCc---eEEEECCCCCcEEEEEecc-ccccceeEEE
Q 038304 49 DGTFVVNDIADNLMFKVKEKLI--------SLHK---RRTVLDPYDNPIVTVTKKL-ISAHEKHYVF 103 (214)
Q Consensus 49 ~~~f~I~D~~G~~vf~V~g~~~--------s~~~---~~~l~D~~G~~L~~i~~k~-~s~~~~w~v~ 103 (214)
.+-+.|+|++|+++.++.-... ...+ ...++|.+|+.|+.-|... ..+...|+.-
T Consensus 26 ~E~~~lvd~~~~~~G~~~r~~~h~~~~~~~g~~h~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p 92 (235)
T 2dho_A 26 AEMCILIDENDNKIGAETKKNCHLNENIEKGLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNT 92 (235)
T ss_dssp CCEEEEECTTCCEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCEESS
T ss_pred CcEEEEEcCCCCEEEEEEhHHhccccccCCCceEEEEEEEEEcCCCEEEEEEecCcCCCCCCcEEec
Confidence 4468999999999999854321 1222 2356788998777544332 2334578753
No 12
>2vnl_A Bifunctional tail protein, PIIGCN4; chimera, hydrolase, late protein, viral protein, phage P22 tailspike protein, mutant Y108WDEL; 1.80A {Enterobacteria phage P22} PDB: 2vky_B
Probab=26.19 E-value=85 Score=23.58 Aligned_cols=55 Identities=9% Similarity=0.054 Sum_probs=34.1
Q ss_pred CcCCcceEEEEEEeeeeecCCCeEEEcCCCCEEEEEEccCCCCCceEEEECCCCCcEEEEE
Q 038304 30 YCVPYPVDIAIVRKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLDPYDNPIVTVT 90 (214)
Q Consensus 30 ~~~~~~~~l~ik~k~~s~~~~~f~I~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~i~ 90 (214)
|.+++.....-......+...+|-| .+|+++-.+.. -++...++|.+|.-+|.+-
T Consensus 49 y~~n~~g~~~qv~qPivin~ag~fv--~ng~l~~~vt~----~ghsmavYd~~Gaq~f~iP 103 (151)
T 2vnl_A 49 YIENEDGSHVQITQPLIINAAGKIV--YNGQLVKIVTV----QGHSMAIYDANGSQVDYIA 103 (151)
T ss_dssp EEECTTSCEEEECSSEEECTTSCEE--ETTEECCEECC----SSCEEEEECTTSCEEEEES
T ss_pred EEecCCCceeeeecceeeecCCcee--eCCEEEEEecc----CCCcceEEecCCCceeeec
Confidence 5565555555555566666556666 36766444432 2456788888888877763
No 13
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara}
Probab=23.60 E-value=1.6e+02 Score=20.14 Aligned_cols=7 Identities=14% Similarity=0.211 Sum_probs=3.1
Q ss_pred CCeEEEc
Q 038304 50 GTFVVND 56 (214)
Q Consensus 50 ~~f~I~D 56 (214)
++..+++
T Consensus 34 GnLvl~~ 40 (110)
T 3r0e_B 34 CNLVLYG 40 (110)
T ss_dssp SCEEEEC
T ss_pred CeEEEEC
Confidence 3444444
No 14
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=23.15 E-value=85 Score=20.85 Aligned_cols=31 Identities=6% Similarity=0.009 Sum_probs=20.7
Q ss_pred CCCEEEEEEccCCCCCceEEEECCCC-CcEEEE
Q 038304 58 ADNLMFKVKEKLISLHKRRTVLDPYD-NPIVTV 89 (214)
Q Consensus 58 ~G~~vf~V~g~~~s~~~~~~l~D~~G-~~L~~i 89 (214)
+|.....++++ ++.+..+.++.+.| +.-+++
T Consensus 19 ~g~~~ie~rN~-f~~GD~iEi~~P~g~~~~~~v 50 (89)
T 4he6_A 19 TGIATVQQRNH-FRPGDEVEFFGPEIENFTQVI 50 (89)
T ss_dssp TTEEEEEESSC-BCTTCEEEEESTTSCCEEEEC
T ss_pred CCEEEEEEcCC-cCCCCEEEEEcCCCCcEEEEe
Confidence 36666666665 67788888888888 433443
No 15
>3oe3_A Putative periplasmic protein; beta barrel, hydrolase inhibitor; 1.51A {Salmonella enterica}
Probab=23.11 E-value=1.3e+02 Score=20.82 Aligned_cols=41 Identities=15% Similarity=0.239 Sum_probs=27.6
Q ss_pred EeeeeecCCCeEEEcCCCCEEEEEEccCCCCCceEEEECCCCCcEEE
Q 038304 42 RKFMSVTDGTFVVNDIADNLMFKVKEKLISLHKRRTVLDPYDNPIVT 88 (214)
Q Consensus 42 ~k~~s~~~~~f~I~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~ 88 (214)
....|-|+-.|.--|.+|...+.-+|. .-.|.|..|+|++.
T Consensus 44 ~qv~SASGarY~~~~~~~~y~lwtKG~------eA~L~~~~g~~i~~ 84 (98)
T 3oe3_A 44 RLMKMASGANYEAIDKNYTYKLYTKGK------TAELVEGDDKPVLS 84 (98)
T ss_dssp EEEEC--CEEEEESSTTCCCEEEEETT------EEEEEETTTEEEEE
T ss_pred EEEEecCcceEEccCCCCcEEEEEeCC------cEEEEECCCCEEEc
Confidence 345666665676666677777777764 57888888888864
No 16
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=21.90 E-value=1.7e+02 Score=20.12 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=9.2
Q ss_pred cCCCeEEEcCC-CCEEE
Q 038304 48 TDGTFVVNDIA-DNLMF 63 (214)
Q Consensus 48 ~~~~f~I~D~~-G~~vf 63 (214)
.++...+++.+ +..+.
T Consensus 32 ~dGNLvL~~~~~~~~vW 48 (113)
T 3mez_B 32 DDCNLVLTKGSKTNIVW 48 (113)
T ss_dssp TTSCEEEEETTTTEEEE
T ss_pred CCCEEEEEECCCCEEEE
Confidence 35677777763 44433
No 17
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=21.56 E-value=1.1e+02 Score=24.38 Aligned_cols=54 Identities=7% Similarity=0.078 Sum_probs=34.0
Q ss_pred CCCeEEEcCCCCEEEEEEccCC--------CCCc---eEEEECCCCCcEEEEEecc-ccccceeEE
Q 038304 49 DGTFVVNDIADNLMFKVKEKLI--------SLHK---RRTVLDPYDNPIVTVTKKL-ISAHEKHYV 102 (214)
Q Consensus 49 ~~~f~I~D~~G~~vf~V~g~~~--------s~~~---~~~l~D~~G~~L~~i~~k~-~s~~~~w~v 102 (214)
.+-+.|+|++|+++.++.-... ...+ ...++|.+|+.|+.-|... ..+...|+.
T Consensus 37 ~E~~~lvd~~~~~iG~~~r~~~h~~~~~~~g~~h~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~ 102 (246)
T 2pny_A 37 EEMLIVVDENDKVIGADTKRNCHLNENIEKGLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTD 102 (246)
T ss_dssp TCEEEEECTTCCEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCBCC
T ss_pred cceEEEEcCCCCEEEEEEhHHhccccccCCCcEEEEEEEEEEeCCCEEEEEEecCCCCCCCCceEe
Confidence 4579999999999999855321 1222 3357798998776544332 233456764
No 18
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=21.48 E-value=1.1e+02 Score=22.08 Aligned_cols=15 Identities=13% Similarity=0.370 Sum_probs=8.9
Q ss_pred eEEEcCCCCEEEEEE
Q 038304 52 FVVNDIADNLMFKVK 66 (214)
Q Consensus 52 f~I~D~~G~~vf~V~ 66 (214)
..|+|++|++|.+++
T Consensus 43 v~I~d~~G~~V~t~~ 57 (138)
T 3c12_A 43 FEITDANGTFVKQLS 57 (138)
T ss_dssp EEEECSSCCEEEEEE
T ss_pred EEEEeCCCCEEEEEE
Confidence 456666666666655
No 19
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=20.24 E-value=2.1e+02 Score=19.39 Aligned_cols=14 Identities=14% Similarity=0.088 Sum_probs=7.0
Q ss_pred ceEEEECCCCCcEE
Q 038304 74 KRRTVLDPYDNPIV 87 (214)
Q Consensus 74 ~~~~l~D~~G~~L~ 87 (214)
..+.|+|.+|.++.
T Consensus 61 GnLvL~d~~~~~vW 74 (105)
T 4h3o_A 61 GNFVVYDSSGRSLW 74 (105)
T ss_dssp SCEEEECTTCCEEE
T ss_pred ccEEEECCCcEEEE
Confidence 34555555555544
Done!