Query 038305
Match_columns 414
No_of_seqs 273 out of 2034
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 09:39:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038305.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038305hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2620 Prohibitins and stomat 100.0 7.5E-51 1.6E-55 372.0 18.7 291 70-360 5-297 (301)
2 PRK10930 FtsH protease regulat 100.0 5.6E-46 1.2E-50 374.4 30.1 254 67-337 90-346 (419)
3 cd03407 Band_7_4 A subgroup of 100.0 1.3E-44 2.7E-49 347.9 31.3 258 79-348 1-261 (262)
4 PRK11029 FtsH protease regulat 100.0 3.1E-44 6.7E-49 352.7 29.8 258 64-338 10-320 (334)
5 TIGR01933 hflK HflK protein. H 100.0 1.1E-42 2.3E-47 334.5 32.1 248 74-338 1-252 (261)
6 TIGR01932 hflC HflC protein. H 100.0 1.1E-42 2.5E-47 342.3 28.8 258 64-338 10-310 (317)
7 cd03404 Band_7_HflK Band_7_Hfl 100.0 5.6E-42 1.2E-46 330.4 28.4 246 64-325 5-265 (266)
8 cd03405 Band_7_HflC Band_7_Hfl 100.0 2.1E-41 4.5E-46 321.9 28.5 234 74-324 1-240 (242)
9 COG0330 HflC Membrane protease 100.0 3.4E-36 7.3E-41 293.8 28.7 262 64-340 11-280 (291)
10 cd03406 Band_7_3 A subgroup of 100.0 1.9E-36 4.1E-41 290.9 26.4 258 70-334 1-279 (280)
11 cd03403 Band_7_stomatin_like B 100.0 5.4E-36 1.2E-40 279.7 24.7 202 77-279 1-204 (215)
12 cd03401 Band_7_prohibitin Band 100.0 1.6E-33 3.5E-38 259.3 20.8 189 73-282 1-195 (196)
13 cd03402 Band_7_2 A subgroup of 100.0 1.2E-32 2.6E-37 257.2 19.9 171 73-245 1-179 (219)
14 KOG2962 Prohibitin-related mem 100.0 3E-30 6.5E-35 232.4 21.0 274 66-348 15-308 (322)
15 KOG2621 Prohibitins and stomat 100.0 7.3E-31 1.6E-35 243.7 11.7 176 70-246 51-228 (288)
16 smart00244 PHB prohibitin homo 100.0 6.1E-29 1.3E-33 220.5 18.4 157 72-229 1-159 (160)
17 PF01145 Band_7: SPFH domain / 100.0 6.8E-29 1.5E-33 224.1 14.9 170 75-245 1-177 (179)
18 KOG3090 Prohibitin-like protei 99.9 4E-25 8.7E-30 198.6 20.4 236 68-337 32-273 (290)
19 KOG2668 Flotillins [Intracellu 99.9 5.5E-22 1.2E-26 188.6 25.2 179 74-255 2-193 (428)
20 KOG3083 Prohibitin [Posttransl 99.9 1.2E-23 2.5E-28 189.1 12.2 242 65-339 18-265 (271)
21 COG2268 Uncharacterized protei 99.9 2.9E-19 6.2E-24 182.4 28.8 159 68-227 26-212 (548)
22 cd03408 Band_7_5 A subgroup of 99.8 4.1E-20 8.8E-25 171.4 16.8 161 68-229 10-206 (207)
23 cd03399 Band_7_flotillin Band_ 99.7 2.1E-17 4.6E-22 141.9 10.6 115 114-228 3-126 (128)
24 cd03400 Band_7_1 A subgroup of 99.7 2.2E-16 4.8E-21 134.8 10.6 115 114-229 4-123 (124)
25 cd02106 Band_7 The band 7 doma 99.6 2.8E-14 6E-19 119.6 13.5 115 115-229 4-120 (121)
26 PF13421 Band_7_1: SPFH domain 99.3 1.2E-10 2.6E-15 108.3 17.9 159 70-229 12-206 (211)
27 COG4260 Membrane protease subu 98.9 6.3E-08 1.4E-12 91.0 15.6 161 69-230 36-234 (345)
28 PTZ00491 major vault protein; 98.9 1.9E-06 4.1E-11 92.6 27.7 185 74-260 464-698 (850)
29 cd03405 Band_7_HflC Band_7_Hfl 97.6 0.00036 7.8E-09 66.2 10.1 95 193-295 121-216 (242)
30 cd03407 Band_7_4 A subgroup of 97.5 0.00064 1.4E-08 65.5 10.1 54 240-293 152-205 (262)
31 cd03404 Band_7_HflK Band_7_Hfl 97.4 0.001 2.2E-08 64.1 10.3 84 210-300 161-245 (266)
32 TIGR01933 hflK HflK protein. H 97.4 0.0011 2.3E-08 63.8 10.2 59 242-300 160-218 (261)
33 PF12127 YdfA_immunity: SigmaW 97.3 0.0057 1.2E-07 58.0 13.2 174 114-313 121-296 (316)
34 PRK11029 FtsH protease regulat 97.3 0.0015 3.4E-08 64.9 10.1 62 239-300 225-286 (334)
35 KOG2620 Prohibitins and stomat 97.2 0.0021 4.5E-08 60.5 9.6 93 234-326 160-257 (301)
36 TIGR01932 hflC HflC protein. H 97.2 0.0024 5.2E-08 63.3 10.2 58 240-297 216-273 (317)
37 PRK13665 hypothetical protein; 96.8 0.015 3.3E-07 54.9 10.8 174 114-313 126-301 (316)
38 PRK10930 FtsH protease regulat 96.0 0.052 1.1E-06 55.8 10.7 133 151-292 163-306 (419)
39 PF11978 MVP_shoulder: Shoulde 94.7 0.19 4.1E-06 41.9 8.0 92 127-218 11-116 (118)
40 cd03403 Band_7_stomatin_like B 94.3 0.22 4.8E-06 46.1 8.5 58 264-335 155-213 (215)
41 COG2811 NtpF Archaeal/vacuolar 93.6 1.3 2.8E-05 36.5 10.6 47 224-270 7-53 (108)
42 PRK01558 V-type ATP synthase s 89.6 3.2 6.9E-05 38.2 9.9 40 232-271 20-59 (198)
43 PRK01558 V-type ATP synthase s 89.3 18 0.00038 33.3 15.5 50 238-287 15-64 (198)
44 TIGR03321 alt_F1F0_F0_B altern 89.2 19 0.00041 34.3 15.2 14 311-324 146-159 (246)
45 COG0330 HflC Membrane protease 89.2 1.1 2.4E-05 43.5 7.0 47 253-300 184-230 (291)
46 PRK01005 V-type ATP synthase s 89.1 3 6.4E-05 38.8 9.3 48 231-278 24-71 (207)
47 CHL00118 atpG ATP synthase CF0 89.0 8 0.00017 34.1 11.7 18 271-288 107-124 (156)
48 PRK06231 F0F1 ATP synthase sub 88.3 10 0.00022 35.2 12.3 14 274-287 136-149 (205)
49 PRK01005 V-type ATP synthase s 88.2 18 0.00039 33.6 13.8 53 237-289 19-71 (207)
50 PRK14475 F0F1 ATP synthase sub 88.0 12 0.00025 33.4 12.2 8 179-186 35-42 (167)
51 PRK13453 F0F1 ATP synthase sub 87.8 10 0.00022 34.0 11.7 10 178-187 42-51 (173)
52 PRK14474 F0F1 ATP synthase sub 87.7 26 0.00057 33.4 15.3 15 310-324 145-159 (250)
53 PRK08404 V-type ATP synthase s 87.6 11 0.00023 31.0 10.7 34 225-258 4-37 (103)
54 TIGR01147 V_ATP_synt_G vacuola 87.4 14 0.0003 31.0 11.2 50 225-274 7-56 (113)
55 COG4864 Uncharacterized protei 87.3 8.1 0.00018 35.9 10.7 94 128-226 139-233 (328)
56 PRK14472 F0F1 ATP synthase sub 87.2 14 0.0003 33.2 12.3 11 178-188 42-52 (175)
57 PRK13460 F0F1 ATP synthase sub 87.0 12 0.00026 33.5 11.7 11 178-188 40-50 (173)
58 PF03748 FliL: Flagellar basal 86.9 14 0.0003 29.4 11.1 51 164-216 44-96 (99)
59 PRK13461 F0F1 ATP synthase sub 86.9 13 0.00028 32.8 11.8 10 178-187 29-38 (159)
60 PRK09174 F0F1 ATP synthase sub 86.7 16 0.00035 33.8 12.6 11 178-188 77-87 (204)
61 PRK08404 V-type ATP synthase s 86.3 7.4 0.00016 31.9 9.1 56 237-292 5-64 (103)
62 PRK06568 F0F1 ATP synthase sub 86.3 12 0.00026 33.1 11.0 14 310-323 127-140 (154)
63 PRK08476 F0F1 ATP synthase sub 86.1 14 0.0003 32.1 11.2 11 178-188 31-41 (141)
64 PRK08475 F0F1 ATP synthase sub 85.9 13 0.00028 33.2 11.3 10 178-187 46-55 (167)
65 PRK07353 F0F1 ATP synthase sub 85.1 19 0.00042 30.8 11.7 26 265-290 84-109 (140)
66 PRK14473 F0F1 ATP synthase sub 85.0 18 0.00039 32.0 11.7 10 178-187 32-41 (164)
67 CHL00019 atpF ATP synthase CF0 84.8 30 0.00065 31.3 15.3 12 177-188 47-58 (184)
68 TIGR01147 V_ATP_synt_G vacuola 84.6 21 0.00045 29.9 11.0 44 249-292 9-52 (113)
69 KOG2668 Flotillins [Intracellu 84.3 5.6 0.00012 39.5 8.5 80 243-327 287-366 (428)
70 PRK07352 F0F1 ATP synthase sub 84.3 20 0.00042 32.2 11.8 13 176-188 41-53 (174)
71 COG1580 FliL Flagellar basal b 84.2 3.4 7.4E-05 36.7 6.6 80 132-217 76-157 (159)
72 PRK05759 F0F1 ATP synthase sub 84.0 22 0.00047 31.0 11.7 17 271-287 89-105 (156)
73 COG2268 Uncharacterized protei 83.6 21 0.00045 37.9 13.0 62 263-326 409-470 (548)
74 PRK13428 F0F1 ATP synthase sub 83.4 39 0.00084 35.2 15.0 19 310-328 142-160 (445)
75 PRK13454 F0F1 ATP synthase sub 82.9 23 0.00049 32.1 11.6 11 178-188 55-65 (181)
76 PRK13455 F0F1 ATP synthase sub 82.4 30 0.00064 31.3 12.2 10 179-188 52-61 (184)
77 TIGR02926 AhaH ATP synthase ar 81.8 23 0.0005 27.8 9.9 27 232-258 7-33 (85)
78 PRK09098 type III secretion sy 81.1 25 0.00054 33.3 11.6 35 236-270 41-75 (233)
79 PRK07718 fliL flagellar basal 81.0 20 0.00044 31.1 10.2 51 164-216 87-139 (142)
80 PRK06568 F0F1 ATP synthase sub 80.9 39 0.00085 29.9 15.0 30 247-276 61-90 (154)
81 cd03406 Band_7_3 A subgroup of 80.0 10 0.00022 36.9 8.7 9 210-218 144-152 (280)
82 PF03179 V-ATPase_G: Vacuolar 78.1 8.4 0.00018 31.5 6.5 47 225-271 5-51 (105)
83 PTZ00491 major vault protein; 77.9 13 0.00029 41.2 9.6 63 240-302 665-747 (850)
84 PRK09174 F0F1 ATP synthase sub 77.4 59 0.0013 30.1 12.6 22 269-290 136-157 (204)
85 TIGR03321 alt_F1F0_F0_B altern 77.4 51 0.0011 31.3 12.6 28 265-292 84-111 (246)
86 PRK14474 F0F1 ATP synthase sub 76.9 49 0.0011 31.6 12.3 29 264-292 83-111 (250)
87 PRK07353 F0F1 ATP synthase sub 76.9 46 0.001 28.4 12.1 7 222-228 30-36 (140)
88 PRK02292 V-type ATP synthase s 76.9 39 0.00085 30.5 11.2 17 242-258 24-40 (188)
89 PRK14472 F0F1 ATP synthase sub 76.7 56 0.0012 29.2 12.4 22 269-290 101-122 (175)
90 PF03179 V-ATPase_G: Vacuolar 76.5 33 0.00073 27.9 9.7 41 240-280 9-49 (105)
91 PRK14471 F0F1 ATP synthase sub 76.4 54 0.0012 28.9 15.2 10 178-187 32-41 (164)
92 PRK06231 F0F1 ATP synthase sub 76.3 65 0.0014 29.8 14.6 10 178-187 72-81 (205)
93 PF00430 ATP-synt_B: ATP synth 75.9 46 0.00099 27.8 10.9 13 250-262 59-71 (132)
94 TIGR02926 AhaH ATP synthase ar 75.7 37 0.00079 26.6 10.0 52 239-290 3-58 (85)
95 PRK13455 F0F1 ATP synthase sub 75.5 62 0.0013 29.2 12.6 40 249-288 86-129 (184)
96 CHL00118 atpG ATP synthase CF0 74.8 58 0.0013 28.5 12.5 6 222-227 47-52 (156)
97 PRK14475 F0F1 ATP synthase sub 74.7 61 0.0013 28.8 12.4 42 248-289 68-113 (167)
98 PRK02292 V-type ATP synthase s 74.0 68 0.0015 28.9 13.1 30 243-272 14-43 (188)
99 CHL00019 atpF ATP synthase CF0 73.6 70 0.0015 28.9 12.3 24 269-292 107-130 (184)
100 PF06188 HrpE: HrpE/YscL/FliH 73.6 73 0.0016 29.1 13.2 36 231-266 27-62 (191)
101 cd03401 Band_7_prohibitin Band 72.6 8.3 0.00018 34.9 5.7 23 271-293 173-195 (196)
102 PRK05697 flagellar basal body- 72.2 13 0.00028 32.2 6.4 53 164-216 78-134 (137)
103 PRK06654 fliL flagellar basal 71.3 39 0.00084 30.7 9.4 83 127-217 93-177 (181)
104 PLN03086 PRLI-interacting fact 71.1 6.6 0.00014 41.9 5.1 11 327-337 89-99 (567)
105 TIGR01144 ATP_synt_b ATP synth 69.8 72 0.0016 27.4 11.0 7 179-185 20-26 (147)
106 PRK07352 F0F1 ATP synthase sub 69.6 83 0.0018 28.1 12.3 20 271-290 104-123 (174)
107 PRK14471 F0F1 ATP synthase sub 69.1 81 0.0018 27.8 14.8 40 250-289 68-111 (164)
108 PRK13460 F0F1 ATP synthase sub 69.1 85 0.0018 28.0 12.6 22 269-290 99-120 (173)
109 PRK09173 F0F1 ATP synthase sub 69.0 80 0.0017 27.7 15.1 19 252-270 64-82 (159)
110 PRK08475 F0F1 ATP synthase sub 68.8 86 0.0019 27.9 14.5 43 248-290 80-126 (167)
111 PRK13454 F0F1 ATP synthase sub 68.4 92 0.002 28.1 12.4 14 250-263 91-104 (181)
112 COG1390 NtpE Archaeal/vacuolar 67.8 1E+02 0.0022 28.4 14.5 22 315-336 107-128 (194)
113 PRK13453 F0F1 ATP synthase sub 67.6 92 0.002 27.8 12.6 21 270-290 102-122 (173)
114 PRK15322 invasion protein OrgB 67.4 1E+02 0.0023 28.4 14.3 32 311-343 95-126 (210)
115 PF06188 HrpE: HrpE/YscL/FliH 66.9 60 0.0013 29.7 10.0 23 232-254 39-61 (191)
116 PRK13428 F0F1 ATP synthase sub 63.8 70 0.0015 33.3 11.0 9 179-187 26-34 (445)
117 PRK09098 type III secretion sy 62.6 1.4E+02 0.003 28.2 13.4 56 238-295 32-87 (233)
118 PRK14473 F0F1 ATP synthase sub 62.5 1.1E+02 0.0024 26.9 12.3 44 248-291 66-113 (164)
119 PRK07021 fliL flagellar basal 62.5 26 0.00057 31.1 6.6 53 164-216 103-159 (162)
120 COG3064 TolA Membrane protein 61.5 1.1E+02 0.0024 30.2 10.9 17 277-293 197-213 (387)
121 PRK05696 fliL flagellar basal 61.4 73 0.0016 28.4 9.3 54 163-216 110-167 (170)
122 PRK08455 fliL flagellar basal 61.1 25 0.00054 32.0 6.2 52 163-216 126-179 (182)
123 PRK13461 F0F1 ATP synthase sub 60.3 1.2E+02 0.0026 26.6 12.6 45 248-292 63-111 (159)
124 PRK12785 fliL flagellar basal 59.9 26 0.00057 31.2 6.1 51 164-216 111-163 (166)
125 KOG2962 Prohibitin-related mem 59.9 1.3E+02 0.0028 28.5 10.5 64 232-295 207-275 (322)
126 PRK01194 V-type ATP synthase s 59.7 1.3E+02 0.0029 27.2 10.8 30 232-261 14-43 (185)
127 PF00430 ATP-synt_B: ATP synth 58.2 1.1E+02 0.0023 25.5 9.8 8 274-281 87-94 (132)
128 COG2811 NtpF Archaeal/vacuolar 57.7 1.1E+02 0.0024 25.4 11.8 29 231-259 25-53 (108)
129 PRK06569 F0F1 ATP synthase sub 55.2 1.5E+02 0.0033 26.2 11.4 10 316-325 124-133 (155)
130 TIGR03825 FliH_bacil flagellar 53.8 2E+02 0.0044 27.3 12.6 22 240-261 46-67 (255)
131 PF01991 vATP-synt_E: ATP synt 53.4 1.7E+02 0.0036 26.2 15.0 28 231-258 5-32 (198)
132 COG0711 AtpF F0F1-type ATP syn 52.6 1.7E+02 0.0036 25.9 12.4 43 248-290 64-110 (161)
133 PRK01194 V-type ATP synthase s 51.8 1.9E+02 0.004 26.3 11.3 26 243-268 14-39 (185)
134 PRK03963 V-type ATP synthase s 51.0 1.9E+02 0.0041 26.1 13.5 27 232-258 15-41 (198)
135 PRK15322 invasion protein OrgB 50.8 2.1E+02 0.0045 26.5 10.3 22 250-271 17-38 (210)
136 PRK03963 V-type ATP synthase s 50.4 1.9E+02 0.0042 26.1 14.7 11 343-353 132-142 (198)
137 TIGR03825 FliH_bacil flagellar 49.9 67 0.0014 30.7 7.5 21 231-251 48-68 (255)
138 COG3064 TolA Membrane protein 48.6 2.7E+02 0.006 27.6 11.2 8 68-75 28-35 (387)
139 PTZ00399 cysteinyl-tRNA-synthe 48.0 1.5E+02 0.0033 32.5 10.7 39 193-231 519-562 (651)
140 PRK06669 fliH flagellar assemb 47.9 2.6E+02 0.0057 26.9 13.9 32 231-262 85-116 (281)
141 KOG1029 Endocytic adaptor prot 46.8 1.6E+02 0.0035 32.7 10.2 20 225-244 335-354 (1118)
142 PRK15354 type III secretion sy 46.7 1.4E+02 0.003 27.8 8.5 56 238-293 34-89 (224)
143 PRK09173 F0F1 ATP synthase sub 45.3 2.1E+02 0.0045 25.0 14.9 31 238-268 61-91 (159)
144 PRK04057 30S ribosomal protein 43.5 1.7E+02 0.0037 27.1 8.8 81 126-216 101-181 (203)
145 PRK06669 fliH flagellar assemb 42.1 3.2E+02 0.007 26.3 12.9 43 234-276 77-119 (281)
146 PF01991 vATP-synt_E: ATP synt 40.6 2.7E+02 0.0058 24.8 9.7 8 403-410 161-168 (198)
147 PF05103 DivIVA: DivIVA protei 38.9 51 0.0011 27.6 4.4 44 251-294 69-112 (131)
148 KOG3083 Prohibitin [Posttransl 36.1 40 0.00087 31.6 3.4 52 218-270 179-230 (271)
149 KOG1772 Vacuolar H+-ATPase V1 35.8 2.5E+02 0.0055 23.2 10.2 41 226-266 8-48 (108)
150 PHA00448 hypothetical protein 34.9 2E+02 0.0043 21.7 6.3 7 259-265 32-38 (70)
151 PRK00409 recombination and DNA 34.8 5.7E+02 0.012 28.8 12.9 22 269-290 564-585 (782)
152 TIGR01069 mutS2 MutS2 family p 33.1 4.7E+02 0.01 29.4 11.8 30 264-293 554-583 (771)
153 COG4396 Mu-like prophage host- 30.8 83 0.0018 27.2 4.2 55 127-193 80-137 (170)
154 TIGR02499 HrpE_YscL_not type I 29.4 3.7E+02 0.0081 23.2 13.3 103 238-352 6-110 (166)
155 TIGR01069 mutS2 MutS2 family p 28.8 5.4E+02 0.012 28.9 11.4 38 252-289 553-590 (771)
156 PRK00409 recombination and DNA 28.0 5.3E+02 0.011 29.0 11.1 36 254-289 560-595 (782)
157 KOG0163 Myosin class VI heavy 25.3 9.4E+02 0.02 27.1 11.7 15 74-88 665-679 (1259)
158 KOG0742 AAA+-type ATPase [Post 23.9 7.4E+02 0.016 25.9 10.1 19 274-292 210-228 (630)
159 PF01015 Ribosomal_S3Ae: Ribos 23.6 4.3E+02 0.0093 24.2 7.9 80 126-216 107-187 (194)
160 KOG1772 Vacuolar H+-ATPase V1 22.9 4.4E+02 0.0095 21.8 11.1 42 249-290 9-50 (108)
161 PLN03086 PRLI-interacting fact 22.9 4.8E+02 0.01 28.2 9.1 18 228-245 10-27 (567)
162 KOG2007 Cysteinyl-tRNA synthet 21.2 3.7E+02 0.008 28.6 7.6 15 28-42 138-152 (586)
163 PTZ00321 ribosomal protein L11 21.2 2.6E+02 0.0056 27.6 6.1 77 132-212 97-195 (342)
No 1
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=100.00 E-value=7.5e-51 Score=372.03 Aligned_cols=291 Identities=60% Similarity=0.853 Sum_probs=282.0
Q ss_pred cceeEEEecCCeEEEEEeCcEEeEEeCCCceeecCccceEEEeeccceEeeeCCCceeecCCCceEEEEEEEEEEecCcc
Q 038305 70 VNWGIRIVPEKKAFVIERFGKYVKTLPSGIHFLIPFVDRIAYVHSLKEEAIPIPDQSAITKDNVSILIDGVLYVKIVDPK 149 (414)
Q Consensus 70 ~~~~~~~V~~g~~gVv~r~Gk~~~~l~pG~hf~~P~i~~v~~v~~~r~q~~~~~~~~v~TkD~~~v~vd~~v~yrI~dp~ 149 (414)
..+.+.+||+.+++|+.|||++.++++||+||+.|+++++.++++++...+..+.++..|+||+.|.+|++++|||.||.
T Consensus 5 ~n~vi~~VpQ~~a~VvER~GkF~~iLePG~~fl~p~~d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~rv~dp~ 84 (301)
T KOG2620|consen 5 TNTVIRFVPQQEAAVVERFGKFHRILEPGLHFLPPVIDKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYRVVDPY 84 (301)
T ss_pred ceeeEEeechhHhHHHHHhhhhhhhcCCcceechhhhhhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEEEeccc
Confidence 34555679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c--cccccCCHHHHHHHHHHHHHHHHHhccchhhhHhhHHHHHHHHHHHHHHHHhhcCcEEeEEEEeecCCcHHHHHHHH
Q 038305 150 L--ASYGVENPIYAVIQLAQTTMRSELGKITLDKTFEERDTLNEKIVEAINVAARDWGLQCLRYEIRDISPPRGVRAAME 227 (414)
Q Consensus 150 ~--~~~~~~~~~~~i~~~~~~~lR~vi~~~tl~ei~~~R~~l~~~i~~~l~~~l~~~GI~I~~V~I~di~~p~~i~~ai~ 227 (414)
+ +.|+++|++..|..++++++|+.+++++||.+|+.|+.|+..|.++++..+..||++|.+..|+||.||+.+.++|+
T Consensus 85 ~~dAsYgvenp~~aI~qlaqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V~~AM~ 164 (301)
T KOG2620|consen 85 ADDASYGVENPEYAIQQLAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSVKRAMN 164 (301)
T ss_pred ccccccccCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHHHHHHH
Confidence 8 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 038305 228 MQAEAERKKRAQILESEGERQAHINIADGKKTSVILESEAAKMDQVNRAQGEAEAIIAKAQATAKGLAMVSQALKENGGL 307 (414)
Q Consensus 228 ~~~~Aeq~~~a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~~~~~AegeA~a~~~~a~AeA~a~~~~~eal~~~~~~ 307 (414)
++.+|+|.+++.+.++|++++.+|++||++++..+...++.+..+++.|.|+|++++..+++.+.++..+...|...++.
T Consensus 165 ~q~~AeR~krAailesEger~~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a~a~~~a~~~~~l~~~~g~ 244 (301)
T KOG2620|consen 165 MQNEAERMKRAAILESEGERIAQINRAEGEKESKILASEGIARQRQNIADGEAEAILAFADAVAGTSAKLVMDLKQEGGV 244 (301)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHhhhhhcchhhhHHhhhHHHHHHHHHHHhhHHHHHHHHhhcccchHHHHHHHHHHhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCCEEEeCCCCCChHHHHHHHHHHHHHhhcCCC
Q 038305 308 EAASLRVAEQYIQAFGNIAKEGNTLLLPSSASSPANMIAQALTMYKSLVSNAS 360 (414)
Q Consensus 308 ~a~~~~~~~~~~e~l~~ia~~~~~vvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (414)
++..+..+++|+.++.++++.+|++++|++.|++.+|++|.+++|++.+....
T Consensus 245 ~aasl~~a~qyIgaf~~lak~sntv~lP~~pg~v~~mvaQa~~~~~~~s~~~~ 297 (301)
T KOG2620|consen 245 EAASLFDAEQYIGAFGKLAKKSNTVFLPHGPGDVRDMVAQALNGYKQLSNATQ 297 (301)
T ss_pred hhHHHHHHHHHHHhhhhhcccCceEEecCCCCcHHHHHHHHHHHHHhhhccCC
Confidence 99999999999999999999999999999999999999999999999876553
No 2
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=100.00 E-value=5.6e-46 Score=374.40 Aligned_cols=254 Identities=19% Similarity=0.313 Sum_probs=235.1
Q ss_pred ccccceeEEEecCCeEEEEEeCcEEeEEeCCCceeecCccceEEEeeccceEeeeCCCceeecCCCceEEEEEEEEEEec
Q 038305 67 IPPVNWGIRIVPEKKAFVIERFGKYVKTLPSGIHFLIPFVDRIAYVHSLKEEAIPIPDQSAITKDNVSILIDGVLYVKIV 146 (414)
Q Consensus 67 ~~~~~~~~~~V~~g~~gVv~r~Gk~~~~l~pG~hf~~P~i~~v~~v~~~r~q~~~~~~~~v~TkD~~~v~vd~~v~yrI~ 146 (414)
++|+++|||+|+++++|||+|||++.++++||+||++||++++..+ +++.+........++|+|++.|.|+++|+|||.
T Consensus 90 ~i~l~sg~yiV~e~E~gVV~rFGk~~~~l~PGLhfk~PfId~V~~v-dv~~~~~~~~~~~mLT~D~n~V~Vd~~VqYrI~ 168 (419)
T PRK10930 90 IIWAASGFYTIKEAERGVVTRFGKFSHLVEPGLNWKPTFIDEVKPV-NVEAVRELAASGVMLTSDENVVRVEMNVQYRVT 168 (419)
T ss_pred HHHHHheEEEECCCeEEEEEECCcCcceeCCceEEecCceEEEEEE-EeEEEEEccCcceeECCCCCEEEEEEEEEEEEC
Confidence 3566789999999999999999999999999999999999999888 777766555667799999999999999999999
Q ss_pred CccccccccCCHHHHHHHHHHHHHHHHHhccchhhhHh-hHHHHHHHHHHHHHHHHhhc--CcEEeEEEEeecCCcHHHH
Q 038305 147 DPKLASYGVENPIYAVIQLAQTTMRSELGKITLDKTFE-ERDTLNEKIVEAINVAARDW--GLQCLRYEIRDISPPRGVR 223 (414)
Q Consensus 147 dp~~~~~~~~~~~~~i~~~~~~~lR~vi~~~tl~ei~~-~R~~l~~~i~~~l~~~l~~~--GI~I~~V~I~di~~p~~i~ 223 (414)
||..|+|++.+++..|.++++++||+++|+++++++++ +|+.+..++++.+++.++.| ||+|.+|.|++++||+++.
T Consensus 169 Dp~~~lf~v~~~~~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I~di~pP~eV~ 248 (419)
T PRK10930 169 DPEKYLFSVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQAARPPEEVK 248 (419)
T ss_pred CHHHHHHhccCHHHHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEeecCCCHHHH
Confidence 99999999999999999999999999999999999995 69999999999999999987 9999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038305 224 AAMEMQAEAERKKRAQILESEGERQAHINIADGKKTSVILESEAAKMDQVNRAQGEAEAIIAKAQATAKGLAMVSQALKE 303 (414)
Q Consensus 224 ~ai~~~~~Aeq~~~a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~~~~~AegeA~a~~~~a~AeA~a~~~~~eal~~ 303 (414)
++|++++.|++++++.+++||++++..+.+|++++++.+.+|||++++.+.+|+|||+++.....++.+++
T Consensus 249 ~Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~~Y~kaP--------- 319 (419)
T PRK10930 249 AAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYKAAP--------- 319 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCH---------
Confidence 99999999999999999999999999999999999999999999999999999999999877666666553
Q ss_pred cCchhhHHHHHHHHHHHHHHHhhhcCCEEEeCCC
Q 038305 304 NGGLEAASLRVAEQYIQAFGNIAKEGNTLLLPSS 337 (414)
Q Consensus 304 ~~~~~a~~~~~~~~~~e~l~~ia~~~~~vvl~~~ 337 (414)
++...+.|+|+|.++.++.++++++.+
T Consensus 320 -------~vtr~RlYletme~vl~~~~kvivd~~ 346 (419)
T PRK10930 320 -------EITRERLYIETMEKVLGHTRKVLVNDK 346 (419)
T ss_pred -------HHHHHHHHHHHHHHHHccCCEEEEeCC
Confidence 455667899999999999999999775
No 3
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=1.3e-44 Score=347.87 Aligned_cols=258 Identities=25% Similarity=0.404 Sum_probs=225.8
Q ss_pred CCeEEEEEeCcEEeEEeCCCceeecCccceEEEeeccceEeeeCCCceeecCCCceEEEEEEEEEEecCcc--ccccccC
Q 038305 79 EKKAFVIERFGKYVKTLPSGIHFLIPFVDRIAYVHSLKEEAIPIPDQSAITKDNVSILIDGVLYVKIVDPK--LASYGVE 156 (414)
Q Consensus 79 ~g~~gVv~r~Gk~~~~l~pG~hf~~P~i~~v~~v~~~r~q~~~~~~~~v~TkD~~~v~vd~~v~yrI~dp~--~~~~~~~ 156 (414)
+|++|||+|||++.++++||+||++||++++....+++.++++++.. ++|+||+.|+||++++|||.||. .++|++.
T Consensus 1 q~~~~Vv~rfGk~~~~l~pGlhf~~P~i~~v~~~~~~r~~~~~~~~~-~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~~ 79 (262)
T cd03407 1 QSQVAIIERFGKFFKVAWPGCHFVIPLVETVAGRLSLRVQQLDVRVE-TKTKDNVFVTVVGQIQYRVSEENATDAFYKLG 79 (262)
T ss_pred CcEEEEEeecCcccccCCCCeEEEeccccceeeEEeeeEEEecCCCc-eEcCCCCEEEEEEEEEEEECCcHHHHHHHHcC
Confidence 58999999999999999999999999999986444999999999875 89999999999999999999987 7899999
Q ss_pred CHHHHHHHHHHHHHHHHHhccchhhhHhhHHHHHHHHHHHHHHHHhhcCcEEeEEEEeecCCcHHHHHHHHhhHHHHHHH
Q 038305 157 NPIYAVIQLAQTTMRSELGKITLDKTFEERDTLNEKIVEAINVAARDWGLQCLRYEIRDISPPRGVRAAMEMQAEAERKK 236 (414)
Q Consensus 157 ~~~~~i~~~~~~~lR~vi~~~tl~ei~~~R~~l~~~i~~~l~~~l~~~GI~I~~V~I~di~~p~~i~~ai~~~~~Aeq~~ 236 (414)
++...|.+.++++||+++|++++++++++|+.|...+.+.+++.+.+|||.|++|.|+|++||+++.++|++++.|++++
T Consensus 80 ~~~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~~~ 159 (262)
T cd03407 80 NPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQR 159 (262)
T ss_pred CHHHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHH
Q 038305 237 RAQILESEGERQAHINIADGKKTSVILESEAAKMDQVNRAQGEAEAIIAKAQATAKGLAMVSQALKENGGLEAASLRVAE 316 (414)
Q Consensus 237 ~a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~~~~~AegeA~a~~~~a~AeA~a~~~~~eal~~~~~~~a~~~~~~~ 316 (414)
++.+.+||+++...+.+|++++++.+.+||+++++.+..|+|+++++....+ ++.....+++.++.+.+
T Consensus 160 ~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 228 (262)
T cd03407 160 VAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLAD-----------AVPGMTAKDVMDLLLVN 228 (262)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-----------HhhcccccchHHHHHHH
Confidence 9999999998887777777777777666666666666666666666555444 44333456677888999
Q ss_pred HHHHHHHHhhhcC-CEEEeCCCCCChHHHHHHH
Q 038305 317 QYIQAFGNIAKEG-NTLLLPSSASSPANMIAQA 348 (414)
Q Consensus 317 ~~~e~l~~ia~~~-~~vvl~~~~~~~~~~~~~~ 348 (414)
+|+|+|+++++++ +++++|.+.+++.+++.+|
T Consensus 229 ~y~e~~~~~~~~~~kviv~p~~~~~~~~~~~~~ 261 (262)
T cd03407 229 QYFDTLKAYGRSSSTVVFRPHGPGGAQDIYAQI 261 (262)
T ss_pred HHHHHHHHHHhCCCCEEEecCCCccHHHHHHhc
Confidence 9999999999755 4578899999988888765
No 4
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=100.00 E-value=3.1e-44 Score=352.74 Aligned_cols=258 Identities=20% Similarity=0.311 Sum_probs=228.2
Q ss_pred eeeccccceeEEEecCCeEEEEEeCcEEeE-------EeCCCceeecCccceEEEeeccceEeeeCCCceeecCCCceEE
Q 038305 64 YDIIPPVNWGIRIVPEKKAFVIERFGKYVK-------TLPSGIHFLIPFVDRIAYVHSLKEEAIPIPDQSAITKDNVSIL 136 (414)
Q Consensus 64 ~~i~~~~~~~~~~V~~g~~gVv~r~Gk~~~-------~l~pG~hf~~P~i~~v~~v~~~r~q~~~~~~~~v~TkD~~~v~ 136 (414)
+++++++++|+++|++|++|||++||++.+ +++||+||++||++++..+ ++|.++++++.+.++|+|++.|.
T Consensus 10 ~~~~~~l~~s~~iV~ege~gVV~rFGk~~~~~~~~~~~l~PGLhf~iPfid~V~~v-dvR~q~~d~~~~~vlT~D~~~V~ 88 (334)
T PRK11029 10 IIVLVVLYMSVFVVKEGERGIVLRFGKVLRDDDNKPLVYAPGLHFKIPFIETVKML-DARIQTMDNQADRFVTKEKKDLI 88 (334)
T ss_pred HHHHHHHHheEEEECCCeEEEEEECCceeccccccccccCCceEEEcCCceEEEEE-eeEEEEeeCCCceEEcCCCCEEE
Confidence 344567778999999999999999999987 4899999999999999988 99999999999999999999999
Q ss_pred EEEEEEEEecCcccccccc--C---CHHHHHHHHHHHHHHHHHhccchhhhHh-hHHHHHHHHHHHHHHH----------
Q 038305 137 IDGVLYVKIVDPKLASYGV--E---NPIYAVIQLAQTTMRSELGKITLDKTFE-ERDTLNEKIVEAINVA---------- 200 (414)
Q Consensus 137 vd~~v~yrI~dp~~~~~~~--~---~~~~~i~~~~~~~lR~vi~~~tl~ei~~-~R~~l~~~i~~~l~~~---------- 200 (414)
||++|+|||.||..+++.. . +....|.+.++++||+++|+++++++++ +|+++..++++.+++.
T Consensus 89 VD~~V~yrI~Dp~~~~~~~~~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~ 168 (334)
T PRK11029 89 VDSYIKWRISDFSRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVAT 168 (334)
T ss_pred EEEEEEEEECCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhcccccccc
Confidence 9999999999998876643 2 3456788999999999999999999994 7999999999999964
Q ss_pred -----------------------------HhhcCcEEeEEEEeecCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 038305 201 -----------------------------ARDWGLQCLRYEIRDISPPRGVRAAMEMQAEAERKKRAQILESEGERQAHI 251 (414)
Q Consensus 201 -----------------------------l~~~GI~I~~V~I~di~~p~~i~~ai~~~~~Aeq~~~a~i~eAe~e~~~~i 251 (414)
+..|||+|.+|.|++++||+++.++|.+++.|+|++++.+.+||+++++..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~ 248 (334)
T PRK11029 169 PAADDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEK 248 (334)
T ss_pred cccccccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHhhhcC-C
Q 038305 252 NIADGKKTSVILESEAAKMDQVNRAQGEAEAIIAKAQATAKGLAMVSQALKENGGLEAASLRVAEQYIQAFGNIAKEG-N 330 (414)
Q Consensus 252 ~~Ae~~a~~~~~~AeA~ae~~~~~AegeA~a~~~~a~AeA~a~~~~~eal~~~~~~~a~~~~~~~~~~e~l~~ia~~~-~ 330 (414)
.+++++++..+..|+|++++.+.+|+|+|+++.+.++|+.++ +.+....+|+++++++++++ +
T Consensus 249 ~~a~A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~~~----------------p~~~~~~~~lea~~~~~~~~~~ 312 (334)
T PRK11029 249 LRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSQD----------------PDFYAFIRSLRAYENSFSGNQD 312 (334)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC----------------HHHHHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999888877766666544 24556778999999998755 5
Q ss_pred EEEeCCCC
Q 038305 331 TLLLPSSA 338 (414)
Q Consensus 331 ~vvl~~~~ 338 (414)
++++|+++
T Consensus 313 ~~vl~~~~ 320 (334)
T PRK11029 313 VMVLSPDS 320 (334)
T ss_pred EEEECCCh
Confidence 68888764
No 5
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=100.00 E-value=1.1e-42 Score=334.50 Aligned_cols=248 Identities=21% Similarity=0.328 Sum_probs=222.1
Q ss_pred EEEecCCeEEEEEeCcEEeEEeCCCceeecCccceEEEeeccceEeeeCCCceeecCCCceEEEEEEEEEEecCcccccc
Q 038305 74 IRIVPEKKAFVIERFGKYVKTLPSGIHFLIPFVDRIAYVHSLKEEAIPIPDQSAITKDNVSILIDGVLYVKIVDPKLASY 153 (414)
Q Consensus 74 ~~~V~~g~~gVv~r~Gk~~~~l~pG~hf~~P~i~~v~~v~~~r~q~~~~~~~~v~TkD~~~v~vd~~v~yrI~dp~~~~~ 153 (414)
+|+|++|++|||++||++.++++||+||++||++++..+ +++.+....+...++|+|++.|.|+++++|||.||.+++|
T Consensus 1 ~~iV~~ge~~Vv~~fGk~~~~l~pGl~~~~P~i~~v~~~-~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d~~~~~~ 79 (261)
T TIGR01933 1 IYTIGEAERGVVLRFGKYHRTVDPGLNWKPPFIEEVYPV-NVTAVRNLRKQGLMLTGDENIVNVEMNVQYRITDPYKYLF 79 (261)
T ss_pred CEEeCCCeEEEEEEcCccccccCCcceEECCCceEEEEe-eeEEEEecCCcCeEEeCCCCEEEEEEEEEEEECCHHHHHH
Confidence 589999999999999999999999999999999999888 7765443333345899999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHHhccchhhhHh-hHHHHHHHHHHHHHHHHhhc--CcEEeEEEEeecCCcHHHHHHHHhhH
Q 038305 154 GVENPIYAVIQLAQTTMRSELGKITLDKTFE-ERDTLNEKIVEAINVAARDW--GLQCLRYEIRDISPPRGVRAAMEMQA 230 (414)
Q Consensus 154 ~~~~~~~~i~~~~~~~lR~vi~~~tl~ei~~-~R~~l~~~i~~~l~~~l~~~--GI~I~~V~I~di~~p~~i~~ai~~~~ 230 (414)
++.+++..+.+.+++++|+++|+++++++++ +|++|.+.+.+.+++.+..| ||+|++|.|++++||+++.++|++++
T Consensus 80 ~~~~~~~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a~~~~~ 159 (261)
T TIGR01933 80 SVENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEAFDDVI 159 (261)
T ss_pred hCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999996 89999999999999999965 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhH
Q 038305 231 EAERKKRAQILESEGERQAHINIADGKKTSVILESEAAKMDQVNRAQGEAEAIIAKAQATAKGLAMVSQALKENGGLEAA 310 (414)
Q Consensus 231 ~Aeq~~~a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~~~~~AegeA~a~~~~a~AeA~a~~~~~eal~~~~~~~a~ 310 (414)
.|++++++.+.+|+++++..+.+|++++++.+.+|||++++.+.+|+|+|+++.+.++|+.+++
T Consensus 160 ~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~~~p---------------- 223 (261)
T TIGR01933 160 IAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYKKAP---------------- 223 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCh----------------
Confidence 9999999999999999999999999999999999999999999999999998887777665542
Q ss_pred HHHHHHHHHHHHHHhhhcCCE-EEeCCCC
Q 038305 311 SLRVAEQYIQAFGNIAKEGNT-LLLPSSA 338 (414)
Q Consensus 311 ~~~~~~~~~e~l~~ia~~~~~-vvl~~~~ 338 (414)
++....+|+++++++.++.++ +++++++
T Consensus 224 ~~~~~~~~le~~~~~~~~~~~~~~~~~~~ 252 (261)
T TIGR01933 224 DVTRERLYLETMEKVLSNTRKVLLDDKKG 252 (261)
T ss_pred HHHHHHHHHHHHHHHHccCCeEEEECCCC
Confidence 445667899999999977666 5555443
No 6
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=100.00 E-value=1.1e-42 Score=342.28 Aligned_cols=258 Identities=22% Similarity=0.296 Sum_probs=220.3
Q ss_pred eeeccccceeEEEecCCeEEEEEeCcEEeEEe-------CCCceeecCccceEEEeeccceEeeeCCCceeecCCCceEE
Q 038305 64 YDIIPPVNWGIRIVPEKKAFVIERFGKYVKTL-------PSGIHFLIPFVDRIAYVHSLKEEAIPIPDQSAITKDNVSIL 136 (414)
Q Consensus 64 ~~i~~~~~~~~~~V~~g~~gVv~r~Gk~~~~l-------~pG~hf~~P~i~~v~~v~~~r~q~~~~~~~~v~TkD~~~v~ 136 (414)
+++++++++|+++|++|++||+++||++.++. +||+||++||++++..+ +++.++++.+...++|+|+++|.
T Consensus 10 ~~~~~~l~~~~~iV~~ge~gVv~~fGk~~~~~~~~~~v~~pGlhf~~P~i~~v~~v-d~r~q~~~~~~~~vlTkD~~~V~ 88 (317)
T TIGR01932 10 VLLIVVLFQPFFIIKEGERGIITRFGKILKDNNHHVLVYEPGLHFKIPFIEHVKIF-DAKIQTMDGRPDRIPTKEKKDII 88 (317)
T ss_pred HHHHHHHHheEEEECCCeEEEEEecCceeccccccccccCCCeEEEeccccEEEEe-eeeEEEecCCcceeECCCCCEEE
Confidence 34456677899999999999999999998765 79999999999999988 99999999998889999999999
Q ss_pred EEEEEEEEecCccccccccC-----CHHHHHHHHHHHHHHHHHhccchhhhH-hhHHHH---------------------
Q 038305 137 IDGVLYVKIVDPKLASYGVE-----NPIYAVIQLAQTTMRSELGKITLDKTF-EERDTL--------------------- 189 (414)
Q Consensus 137 vd~~v~yrI~dp~~~~~~~~-----~~~~~i~~~~~~~lR~vi~~~tl~ei~-~~R~~l--------------------- 189 (414)
|+++++|||.||..+++++. +.+..|.+.+++++|+++|++++++++ .+|+++
T Consensus 89 Vd~~V~yrV~d~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~~~~~~ 168 (317)
T TIGR01932 89 IDTYIRWRIEDFKKYYLSTGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMT 168 (317)
T ss_pred EEEEEEEEECCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhccccccccccccc
Confidence 99999999999988877644 356779999999999999999999999 446555
Q ss_pred --------HHHHHHHHHHHHhhcCcEEeEEEEeecCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 038305 190 --------NEKIVEAINVAARDWGLQCLRYEIRDISPPRGVRAAMEMQAEAERKKRAQILESEGERQAHINIADGKKTSV 261 (414)
Q Consensus 190 --------~~~i~~~l~~~l~~~GI~I~~V~I~di~~p~~i~~ai~~~~~Aeq~~~a~i~eAe~e~~~~i~~Ae~~a~~~ 261 (414)
...+.+.+.+.+.+|||+|++|.|+|++||+++.++|.+++.|+|++++...++++++++....++++++..
T Consensus 169 ~~~~r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~ 248 (317)
T TIGR01932 169 ITKGREILAREISQIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEYEVR 248 (317)
T ss_pred cchhhhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888899999999999999999999999999999999999999999999998888888888888888
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHhhhcCC-EEEeCCCC
Q 038305 262 ILESEAAKMDQVNRAQGEAEAIIAKAQATAKGLAMVSQALKENGGLEAASLRVAEQYIQAFGNIAKEGN-TLLLPSSA 338 (414)
Q Consensus 262 ~~~AeA~ae~~~~~AegeA~a~~~~a~AeA~a~~~~~eal~~~~~~~a~~~~~~~~~~e~l~~ia~~~~-~vvl~~~~ 338 (414)
++.|||++++.+.+|+|||+++.+.++++.++ +.+...++|+++++++.++.+ ++++++++
T Consensus 249 ~~~aeA~a~a~~~~Aegea~a~~~~~~a~~~~----------------p~~~~~~~~le~~~~~~~~~~~~~vl~~~~ 310 (317)
T TIGR01932 249 KILSEAYRTARIIKGEGDAEAAKIYSDAYGKD----------------PEFYSFWRSLEAYEKSFKDNQDEKVLSTDS 310 (317)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHccC----------------HHHHHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence 88888777777777777777666555444433 245566799999999997654 68887764
No 7
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=5.6e-42 Score=330.36 Aligned_cols=246 Identities=23% Similarity=0.347 Sum_probs=212.9
Q ss_pred eeeccccceeEEEecCCeEEEEEeCcEEeEEeCCCceeecCccceEEEeeccceE----------e--eeCCCceeecCC
Q 038305 64 YDIIPPVNWGIRIVPEKKAFVIERFGKYVKTLPSGIHFLIPFVDRIAYVHSLKEE----------A--IPIPDQSAITKD 131 (414)
Q Consensus 64 ~~i~~~~~~~~~~V~~g~~gVv~r~Gk~~~~l~pG~hf~~P~i~~v~~v~~~r~q----------~--~~~~~~~v~TkD 131 (414)
+++++++++||++|++|++|||++||++.++++||+||++||++++..+.+++.+ . .......++|+|
T Consensus 5 ~~~~~~~~~s~~~V~~ge~gVV~~fGk~~~~~~pGlh~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~T~D 84 (266)
T cd03404 5 LLVILWLLSGFYIVQPGERGVVLRFGKYSRTVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLMLTGD 84 (266)
T ss_pred HHHHHHHHcEEEEECCCceEEeEEcCccccccCCceeEecCCCcEEEEEecceeEEeeccccccccccCCCcccceEeCC
Confidence 3455677789999999999999999999999999999999999987655344211 1 122234689999
Q ss_pred CceEEEEEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHhccchhhhHhh-HHHHHHHHHHHHHHHHhhc--CcEE
Q 038305 132 NVSILIDGVLYVKIVDPKLASYGVENPIYAVIQLAQTTMRSELGKITLDKTFEE-RDTLNEKIVEAINVAARDW--GLQC 208 (414)
Q Consensus 132 ~~~v~vd~~v~yrI~dp~~~~~~~~~~~~~i~~~~~~~lR~vi~~~tl~ei~~~-R~~l~~~i~~~l~~~l~~~--GI~I 208 (414)
|+.|.++++++|||.||..++|+..+++..|.+.+++++|+++|++++++++++ |+++.+.+++.+++.+..| ||+|
T Consensus 85 ~~~v~vd~~v~yrI~d~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~~~~~Gi~v 164 (266)
T cd03404 85 ENIVDVEFAVQYRISDPYDYLFNVRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEI 164 (266)
T ss_pred CCEEEEEEEEEEEECCHHHHHhhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhhccCCCeEE
Confidence 999999999999999999999999999999999999999999999999999966 9999999999999999976 9999
Q ss_pred eEEEEeecCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 038305 209 LRYEIRDISPPRGVRAAMEMQAEAERKKRAQILESEGERQAHINIADGKKTSVILESEAAKMDQVNRAQGEAEAIIAKAQ 288 (414)
Q Consensus 209 ~~V~I~di~~p~~i~~ai~~~~~Aeq~~~a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~~~~~AegeA~a~~~~a~ 288 (414)
++|.|++++||+++.++|++++.|++++++.+.+|+++++..+.+|++++++.+++|+|++++.+.+|+|+|+++.+.+.
T Consensus 165 ~~v~i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~~~~~~~ 244 (266)
T cd03404 165 VGVNLQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEAARFESLLA 244 (266)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888888888888888888888888888888877776666
Q ss_pred HHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHh
Q 038305 289 ATAKGLAMVSQALKENGGLEAASLRVAEQYIQAFGNI 325 (414)
Q Consensus 289 AeA~a~~~~~eal~~~~~~~a~~~~~~~~~~e~l~~i 325 (414)
|+.+.+ .+.+.+.|+++|.++
T Consensus 245 a~~~~~----------------~~~~~~~~~~~~~~~ 265 (266)
T cd03404 245 EYKKAP----------------DVTRERLYLETMEEV 265 (266)
T ss_pred HHhhCh----------------HHHHHHHHHHHHHHh
Confidence 555432 344667799999865
No 8
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=2.1e-41 Score=321.91 Aligned_cols=234 Identities=26% Similarity=0.375 Sum_probs=204.3
Q ss_pred EEEecCCeEEEEEeCcEEeE-EeCCCceeecCccceEEEeeccceEeeeCCCceeecCCCceEEEEEEEEEEecCccccc
Q 038305 74 IRIVPEKKAFVIERFGKYVK-TLPSGIHFLIPFVDRIAYVHSLKEEAIPIPDQSAITKDNVSILIDGVLYVKIVDPKLAS 152 (414)
Q Consensus 74 ~~~V~~g~~gVv~r~Gk~~~-~l~pG~hf~~P~i~~v~~v~~~r~q~~~~~~~~v~TkD~~~v~vd~~v~yrI~dp~~~~ 152 (414)
||+|++|++||+++||++.+ +++||+||++||++++..+ +++.+.++++..+++|+|++.|.++++++|||.||..++
T Consensus 1 ~~iV~~ge~~Vv~~~Gk~~~~~~~pG~~~~~P~i~~v~~v-~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~ 79 (242)
T cd03405 1 LFIVDEGEQAVVLRFGEVVRVVTEPGLHFKLPFIQQVKKF-DKRILTLDSDPQRVLTKDKKRLIVDAYAKWRITDPLRFY 79 (242)
T ss_pred CEEeCCCeEEEEEEcCccccccCCCCeeEEcCCcceEEEE-cCEEEeccCCcceEEccCCcEEEEEEEEEEEEcCHHHHH
Confidence 58999999999999999987 5899999999999998888 999999998888999999999999999999999998887
Q ss_pred cccCCH----HHHHHHHHHHHHHHHHhccchhhhHhh-HHHHHHHHHHHHHHHHhhcCcEEeEEEEeecCCcHHHHHHHH
Q 038305 153 YGVENP----IYAVIQLAQTTMRSELGKITLDKTFEE-RDTLNEKIVEAINVAARDWGLQCLRYEIRDISPPRGVRAAME 227 (414)
Q Consensus 153 ~~~~~~----~~~i~~~~~~~lR~vi~~~tl~ei~~~-R~~l~~~i~~~l~~~l~~~GI~I~~V~I~di~~p~~i~~ai~ 227 (414)
+.+.+. +..|.+.+++.+|+++|++++++++++ |++|.+.+++.+++.+.+|||+|++|.|+||+||+++.++|+
T Consensus 80 ~~~~~~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i~~ai~ 159 (242)
T cd03405 80 QAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSESVY 159 (242)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHHHHHHH
Confidence 766543 367899999999999999999999966 999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 038305 228 MQAEAERKKRAQILESEGERQAHINIADGKKTSVILESEAAKMDQVNRAQGEAEAIIAKAQATAKGLAMVSQALKENGGL 307 (414)
Q Consensus 228 ~~~~Aeq~~~a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~~~~~AegeA~a~~~~a~AeA~a~~~~~eal~~~~~~ 307 (414)
+++.|+|++.+++.+|++++++.+.+|+++++..+..|||++++.+.+|+|||+++.+.++ ++++ +|
T Consensus 160 ~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~-----------a~~~--~p 226 (242)
T cd03405 160 RRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAE-----------AYGK--DP 226 (242)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-----------HHcC--CH
Confidence 9999999999999999998888888888877777777777777777777777766655444 4442 23
Q ss_pred hhHHHHHHHHHHHHHHH
Q 038305 308 EAASLRVAEQYIQAFGN 324 (414)
Q Consensus 308 ~a~~~~~~~~~~e~l~~ 324 (414)
++..+.+++++++.
T Consensus 227 ---~~~~~~~~l~~~~~ 240 (242)
T cd03405 227 ---EFYAFYRSLEAYRN 240 (242)
T ss_pred ---HHHHHHHHHHHHHh
Confidence 44556678888874
No 9
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-36 Score=293.77 Aligned_cols=262 Identities=39% Similarity=0.599 Sum_probs=219.1
Q ss_pred eeeccccceeEEEecCCeEEEEEeCcEEeEEeC-CCceeecCc---cceEEEeeccceEeeeC-CCceeecCCCceEEEE
Q 038305 64 YDIIPPVNWGIRIVPEKKAFVIERFGKYVKTLP-SGIHFLIPF---VDRIAYVHSLKEEAIPI-PDQSAITKDNVSILID 138 (414)
Q Consensus 64 ~~i~~~~~~~~~~V~~g~~gVv~r~Gk~~~~l~-pG~hf~~P~---i~~v~~v~~~r~q~~~~-~~~~v~TkD~~~v~vd 138 (414)
+++++++++++++|++++.+++.+||++.++++ ||+||++|| ++.+....+.+.++++. +.+.++|+|+..|.||
T Consensus 11 ~~~~~~~~~~~~~v~~~~~~vv~r~G~~~~~~~~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~~~q~viT~D~~~V~vd 90 (291)
T COG0330 11 VILIVLLFSSIFVVKEGERGVVLRFGRYTRTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNVIVSVD 90 (291)
T ss_pred HHHHHHHHceeEEEcCCceEEEEEecceeeecCCCceEEEcCCccceeeeeeeeeeEEEEeccCCcceEEecCCCEEEEE
Confidence 344567778999999999999999999999998 999999999 45543334888999999 7899999999999999
Q ss_pred EEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHhccchhhhHhhHH-HHHHHHHHHHHHHHhhcCcEEeEEEEeecC
Q 038305 139 GVLYVKIVDPKLASYGVENPIYAVIQLAQTTMRSELGKITLDKTFEERD-TLNEKIVEAINVAARDWGLQCLRYEIRDIS 217 (414)
Q Consensus 139 ~~v~yrI~dp~~~~~~~~~~~~~i~~~~~~~lR~vi~~~tl~ei~~~R~-~l~~~i~~~l~~~l~~~GI~I~~V~I~di~ 217 (414)
.+++|||.||..++|++++++..+.+.+++.||+++|++++++++++|+ .+...+.+.+++.+.+|||.|.+|.|++++
T Consensus 91 ~~v~~rv~d~~~~~~~v~~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~~V~i~~i~ 170 (291)
T COG0330 91 AVVQYRVTDPQKAVYNVENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDID 170 (291)
T ss_pred EEEEEEEcCHHHHHHhcCCHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEEEEEEeecC
Confidence 9999999999999999999999999999999999999999999998888 999999999999999999999999999999
Q ss_pred CcHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 038305 218 PPRGVRAAMEMQAEAERKKRAQILESEGERQAHINIADGKKTSVILESEAAKMDQVNRAQGEAEAIIAKAQATAKGLAMV 297 (414)
Q Consensus 218 ~p~~i~~ai~~~~~Aeq~~~a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~~~~~AegeA~a~~~~a~AeA~a~~~~ 297 (414)
||+++.++|.+++.|++++++.+.+|++++++.+.+|+++++..++.+||++++ ...++|++++.+.+
T Consensus 171 ~p~ev~~a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a------------~~~~~a~~~~~~~~ 238 (291)
T COG0330 171 PPEEVQAAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA------------EVIARAEADAAKII 238 (291)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHH------------HHHHhhccHHHHHH
Confidence 999999999999999999999999999999998888888887777777777665 22222333345555
Q ss_pred HHHHHhcCchhhHHHHHHHHHHHHHHHhhhc--CCEEEeCCCCCC
Q 038305 298 SQALKENGGLEAASLRVAEQYIQAFGNIAKE--GNTLLLPSSASS 340 (414)
Q Consensus 298 ~eal~~~~~~~a~~~~~~~~~~e~l~~ia~~--~~~vvl~~~~~~ 340 (414)
++++.+.. .......++|++.+.+.+.+ ++++++|.+.++
T Consensus 239 ~~~~~~~~---~~~~~~~~r~~~~~~~~~~~~~~~~v~~p~~~~~ 280 (291)
T COG0330 239 AAALREAP---AAPQALAQRYLEELLEIALAGNSKVVVVPNSAGG 280 (291)
T ss_pred Hhhccccc---chhHHHHHHHHHHHHHHhhCCCCeEEEecCCccc
Confidence 55555322 23445666777777777654 345566665444
No 10
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=1.9e-36 Score=290.94 Aligned_cols=258 Identities=18% Similarity=0.223 Sum_probs=215.9
Q ss_pred cceeEEEecCCeEEEEEeCcEEe-EEeCCCceeecCccceEEEeeccceEeeeCCCceeecCCCceEEEEEEEEEEecCc
Q 038305 70 VNWGIRIVPEKKAFVIERFGKYV-KTLPSGIHFLIPFVDRIAYVHSLKEEAIPIPDQSAITKDNVSILIDGVLYVKIVDP 148 (414)
Q Consensus 70 ~~~~~~~V~~g~~gVv~r~Gk~~-~~l~pG~hf~~P~i~~v~~v~~~r~q~~~~~~~~v~TkD~~~v~vd~~v~yrI~dp 148 (414)
+++|+|+|++|++|||+|||++. .+++||+||++||++++..+ +++.++.+.+...+.|+||++|.+|.+..|++.||
T Consensus 1 ~~ssv~iV~ege~gVV~RfGkv~~~~l~PGLHfkiPfId~V~~v-~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp 79 (280)
T cd03406 1 LSSALHKIEEGHVGVYYRGGALLTSTSGPGFHLMLPFITTYKSV-QVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIP 79 (280)
T ss_pred CCceEEEECCCeEEEEEECCcccccccCCceEEecCCceEEEEE-EeEEEEeccCCcccccCCCcEEEEEEEEEEEecCH
Confidence 35789999999999999999985 56799999999999999887 99999998887789999999999997655556777
Q ss_pred ccc-----ccccCCHHHHHHHHHHHHHHHHHhccchhhhHh-hHHHHHHHHHHHHHHHHhhc--CcEEeEEEEeecCCcH
Q 038305 149 KLA-----SYGVENPIYAVIQLAQTTMRSELGKITLDKTFE-ERDTLNEKIVEAINVAARDW--GLQCLRYEIRDISPPR 220 (414)
Q Consensus 149 ~~~-----~~~~~~~~~~i~~~~~~~lR~vi~~~tl~ei~~-~R~~l~~~i~~~l~~~l~~~--GI~I~~V~I~di~~p~ 220 (414)
..+ .|+.++....|.+.+++++|+++|+++++++++ +|+.+...+++.+++.+..| ||+|.+|.|++++||+
T Consensus 80 ~~~~~~~~~y~~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~ 159 (280)
T cd03406 80 DSVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPE 159 (280)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCH
Confidence 652 256778889999999999999999999999994 89999999999999999987 9999999999999999
Q ss_pred HHHHHHHhhHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhhhhHHHHHHH---HHHHHHHHHhhHHHHHHHHHHH
Q 038305 221 GVRAAMEMQAEAERKKR--------AQILESEGERQAHINIADGKKTSVILESEA---AKMDQVNRAQGEAEAIIAKAQA 289 (414)
Q Consensus 221 ~i~~ai~~~~~Aeq~~~--------a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA---~ae~~~~~AegeA~a~~~~a~A 289 (414)
++.++| ++|.|||++. +.+.+||+++...+.+|++++++..+.-+. +++.....++-|.+.+++..++
T Consensus 160 ~V~~af-erM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (280)
T cd03406 160 AIRRNY-ELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKILFGQKVMEKETEKRISEIEDEAFLAREKA 238 (280)
T ss_pred HHHHHH-HHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhh
Confidence 999999 7999999999 999999999999999999999998876553 3666666777777777777776
Q ss_pred HHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHhh-hcCCEEEe
Q 038305 290 TAKGLAMVSQALKENGGLEAASLRVAEQYIQAFGNIA-KEGNTLLL 334 (414)
Q Consensus 290 eA~a~~~~~eal~~~~~~~a~~~~~~~~~~e~l~~ia-~~~~~vvl 334 (414)
.|++ +.++.....++..+.+...|++..+.-+ .+++++++
T Consensus 239 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (280)
T cd03406 239 KADA-----EYYTAQKEAEANKLKLTPEYLELMKYEAIAANSKIYF 279 (280)
T ss_pred ccCH-----HHHHHHHHHhhchhcCCHHHHHHHHHHHHHhcCcccc
Confidence 6665 3344444445556667777777666554 34556665
No 11
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=100.00 E-value=5.4e-36 Score=279.69 Aligned_cols=202 Identities=46% Similarity=0.733 Sum_probs=183.2
Q ss_pred ecCCeEEEEEeCcEEeEEeCCCceeecCccceE-EEeeccceEeeeCCCceeecCCCceEEEEEEEEEEecCcccccccc
Q 038305 77 VPEKKAFVIERFGKYVKTLPSGIHFLIPFVDRI-AYVHSLKEEAIPIPDQSAITKDNVSILIDGVLYVKIVDPKLASYGV 155 (414)
Q Consensus 77 V~~g~~gVv~r~Gk~~~~l~pG~hf~~P~i~~v-~~v~~~r~q~~~~~~~~v~TkD~~~v~vd~~v~yrI~dp~~~~~~~ 155 (414)
|++|++||+++||++.++++||+||++||++++ ..+ +++.+.++++.+.++|+|++.|.+++++.|||.||..+.+++
T Consensus 1 V~~ge~~Vv~~~G~~~~~~~pG~~f~~P~~~~v~~~v-~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~ 79 (215)
T cd03403 1 VPQYERGVVERLGKYHRTLGPGLHFIIPFIDRIAYKV-DLREQVLDVPPQEVITKDNVTVRVDAVLYYRVVDPVKAVYGV 79 (215)
T ss_pred CCcceEEEEEEcCcCccccCCcEEEEeccceEEEEEE-eeEEEEEccCCceeEcCCCCEEEEEEEEEEEEecHHHHHhcC
Confidence 789999999999999999999999999999998 777 999999999998899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhccchhhhHhhHHHHHHHHHHHHHHHHhhcCcEEeEEEEeecCCcHHHHHHHHhhHHHHHH
Q 038305 156 ENPIYAVIQLAQTTMRSELGKITLDKTFEERDTLNEKIVEAINVAARDWGLQCLRYEIRDISPPRGVRAAMEMQAEAERK 235 (414)
Q Consensus 156 ~~~~~~i~~~~~~~lR~vi~~~tl~ei~~~R~~l~~~i~~~l~~~l~~~GI~I~~V~I~di~~p~~i~~ai~~~~~Aeq~ 235 (414)
++++..+.+.+++++|++++++++++++++|+.+.+.+++.++..+.+|||+|++|.|+++++|+++.++|++++.|+++
T Consensus 80 ~~~~~~l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~~A~~~ 159 (215)
T cd03403 80 EDYRYAISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAERE 159 (215)
T ss_pred CCHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHHHHHHHHHhhH
Q 038305 236 KRAQILESEGERQAHINIADGKKTSVI-LESEAAKMDQVNRAQGE 279 (414)
Q Consensus 236 ~~a~i~eAe~e~~~~i~~Ae~~a~~~~-~~AeA~ae~~~~~Aege 279 (414)
+++.+.+|++++++.+.+|+++++... ..+.+.+.....++.|+
T Consensus 160 ~~a~i~~A~ge~~a~~~~aea~~~~~~~~~~~~~~~~e~~~~~~~ 204 (215)
T cd03403 160 KRAKIIEAEGERQAAILLAEAAKQAAINPAALQLRELETLEEIAK 204 (215)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 999998888888887777777766554 44555544444444443
No 12
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=100.00 E-value=1.6e-33 Score=259.29 Aligned_cols=189 Identities=20% Similarity=0.264 Sum_probs=160.7
Q ss_pred eEEEecCCeEEEEEeCcEEeE--EeCCCceeecCccceEEEeeccceEeeeCCCceeecCCCceEEEEEEEEEEecCcc-
Q 038305 73 GIRIVPEKKAFVIERFGKYVK--TLPSGIHFLIPFVDRIAYVHSLKEEAIPIPDQSAITKDNVSILIDGVLYVKIVDPK- 149 (414)
Q Consensus 73 ~~~~V~~g~~gVv~r~Gk~~~--~l~pG~hf~~P~i~~v~~v~~~r~q~~~~~~~~v~TkD~~~v~vd~~v~yrI~dp~- 149 (414)
||++|++|++||+++||+... +++||+||++||++++..+ +++.+++++.. .+.|+|++.|+++++++|++.+..
T Consensus 1 ~~~~V~~g~~gVv~~~g~~~~~~~~~pG~h~~~P~~~~v~~~-~~r~~~~~~~~-~~~t~d~~~V~v~~~v~y~v~~~~~ 78 (196)
T cd03401 1 SLYNVDGGHRAVLFNRGGGVKDLVYGEGLHFRIPWFQKPIIF-DVRARPRNIES-TTGSKDLQMVNITLRVLFRPDASQL 78 (196)
T ss_pred CEEEECCCcEEEEEEecCccccCccCCceEEEccccceeEEE-EeeeeEEEEee-cccCCCCeEEEEEEEEEEEeCHHHH
Confidence 589999999999999998654 8899999999999999888 99999888754 478999999999999999996422
Q ss_pred --cc-ccccCCHHHHHHHHHHHHHHHHHhccchhhhHhhHHHHHHHHHHHHHHHHhhcCcEEeEEEEeecCCcHHHHHHH
Q 038305 150 --LA-SYGVENPIYAVIQLAQTTMRSELGKITLDKTFEERDTLNEKIVEAINVAARDWGLQCLRYEIRDISPPRGVRAAM 226 (414)
Q Consensus 150 --~~-~~~~~~~~~~i~~~~~~~lR~vi~~~tl~ei~~~R~~l~~~i~~~l~~~l~~~GI~I~~V~I~di~~p~~i~~ai 226 (414)
.+ .|+.++.+..|.+.+++.+|+++|+|++++++++|++|.+.+.+.+++.+.+|||.|++|.|+||++|+++.++|
T Consensus 79 ~~~~~~~~~~~~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai 158 (196)
T cd03401 79 PRIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAV 158 (196)
T ss_pred HHHHHHhCcchHhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHH
Confidence 12 234445567889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhHHHH
Q 038305 227 EMQAEAERKKRAQILESEGERQAHINIADGKKTSVILESEAAKMDQVNRAQGEAEA 282 (414)
Q Consensus 227 ~~~~~Aeq~~~a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~~~~~AegeA~a 282 (414)
++++.|+|+++++. ..+..|++++++.+++|+|||++
T Consensus 159 ~~k~~a~q~~~~a~-------------------~~~~~a~~ea~~~~~~A~gea~a 195 (196)
T cd03401 159 EAKQVAQQEAERAK-------------------FVVEKAEQEKQAAVIRAEGEAEA 195 (196)
T ss_pred HHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhhhhhhc
Confidence 99999988876532 22344666666677777777654
No 13
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=1.2e-32 Score=257.23 Aligned_cols=171 Identities=19% Similarity=0.297 Sum_probs=161.9
Q ss_pred eEEEecCCeEEEEEeCcEEeEEe-CCCceeecCccceEEEeeccceEeeeCCCceeecCCCceEEEEEEEEEEecCcccc
Q 038305 73 GIRIVPEKKAFVIERFGKYVKTL-PSGIHFLIPFVDRIAYVHSLKEEAIPIPDQSAITKDNVSILIDGVLYVKIVDPKLA 151 (414)
Q Consensus 73 ~~~~V~~g~~gVv~r~Gk~~~~l-~pG~hf~~P~i~~v~~v~~~r~q~~~~~~~~v~TkD~~~v~vd~~v~yrI~dp~~~ 151 (414)
|+|+|+||++||+++||++.+++ +||+||++||++. ..+ +++.++++.+.+.++|+||++|.|+++++|||.||.++
T Consensus 1 g~~iV~~ge~~Vv~rfGk~~~t~~~pGL~~~~P~~~~-~~v-d~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~Dp~ka 78 (219)
T cd03402 1 GLFVVEPNQARVLVLFGRYIGTIRRTGLRWVNPFSSK-KRV-SLRVRNFESEKLKVNDANGNPIEIAAVIVWRVVDTAKA 78 (219)
T ss_pred CeEEECCCeeEEEEEcCcCcccccCCceEEEeccceE-EEE-eeEEEEecCCCceeEcCCCCEEEEEEEEEEEEcCHHHH
Confidence 68999999999999999999876 9999999999975 556 99999999999999999999999999999999999999
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhccchhhhHh-------hHHHHHHHHHHHHHHHHhhcCcEEeEEEEeecCCcHHHHH
Q 038305 152 SYGVENPIYAVIQLAQTTMRSELGKITLDKTFE-------ERDTLNEKIVEAINVAARDWGLQCLRYEIRDISPPRGVRA 224 (414)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~lR~vi~~~tl~ei~~-------~R~~l~~~i~~~l~~~l~~~GI~I~~V~I~di~~p~~i~~ 224 (414)
+|+++|+...+...+++++|+++|+++++++++ +|+++..++.+.+++.+..|||+|.+|+|+++.+|+++.+
T Consensus 79 ~~~v~~~~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p~ei~~ 158 (219)
T cd03402 79 VFNVDDYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYAPEIAQ 158 (219)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCCHHHHH
Confidence 999999999999999999999999999999984 5799999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHH
Q 038305 225 AMEMQAEAERKKRAQILESEG 245 (414)
Q Consensus 225 ai~~~~~Aeq~~~a~i~eAe~ 245 (414)
+|.++++|+++..+....+++
T Consensus 159 am~~R~~Ae~~~~Ar~~~~~G 179 (219)
T cd03402 159 AMLQRQQASAIIAARRKIVEG 179 (219)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 999999999998888777666
No 14
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=99.97 E-value=3e-30 Score=232.36 Aligned_cols=274 Identities=17% Similarity=0.224 Sum_probs=220.0
Q ss_pred eccccceeEEEecCCeEEEEEeCcEEeEE-eCCCceeecCccceEEEeeccceEeeeCCCceeecCCCceEEEE--EEEE
Q 038305 66 IIPPVNWGIRIVPEKKAFVIERFGKYVKT-LPSGIHFLIPFVDRIAYVHSLKEEAIPIPDQSAITKDNVSILID--GVLY 142 (414)
Q Consensus 66 i~~~~~~~~~~V~~g~~gVv~r~Gk~~~~-l~pG~hf~~P~i~~v~~v~~~r~q~~~~~~~~v~TkD~~~v~vd--~~v~ 142 (414)
++.++++.++.|++||+||+||.|.+... .+||+|+++||+.++..+ .++.|+.++.+.+|.|+.|+.+.+| -+|+
T Consensus 15 ~~~~~~s~vHkieEGHvgvYyRGGALL~~~t~PG~Hl~lPFiTt~ksV-QvTLQTDev~nvPCGTsGGVlIyfdrIEVVN 93 (322)
T KOG2962|consen 15 LVAFLSSAVHKIEEGHVGVYYRGGALLTSITGPGFHLMLPFITTYKSV-QVTLQTDEVKNVPCGTSGGVLIYFDRIEVVN 93 (322)
T ss_pred HHHHHHHHHhhcccCceEEEEecceeeeccCCCCcEEEeeeeeceeee-EEEeeccccccCCCCCCCcEEEEEehhhhhh
Confidence 34566778999999999999999998865 599999999999999988 9999999999999999999999999 3344
Q ss_pred EEecCcc---ccccccCCHHHHHHHHHHHHHHHHHhccchhhhH-hhHHHHHHHHHHHHHHHHhhc--CcEEeEEEEeec
Q 038305 143 VKIVDPK---LASYGVENPIYAVIQLAQTTMRSELGKITLDKTF-EERDTLNEKIVEAINVAARDW--GLQCLRYEIRDI 216 (414)
Q Consensus 143 yrI~dp~---~~~~~~~~~~~~i~~~~~~~lR~vi~~~tl~ei~-~~R~~l~~~i~~~l~~~l~~~--GI~I~~V~I~di 216 (414)
|-..|.. ...|++++...+|.+.+++.+.++|+.+|++++| +-.+++.+++++.|+.+|..+ |++|..|+++..
T Consensus 94 ~L~~d~Vydiv~NYtvdYD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKP 173 (322)
T KOG2962|consen 94 FLRPDAVYDIVKNYTVDYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVRVTKP 173 (322)
T ss_pred hhchhHHHHHHHHcccCCcchhhhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEEecCC
Confidence 4322221 2468899999999999999999999999999999 889999999999999999987 999999999999
Q ss_pred CCcHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH---HHHHHHHHHHhhHHHHHHHH
Q 038305 217 SPPRGVRAAME-------MQAEAERKKRAQILESEGERQAHINIADGKKTSVILESE---AAKMDQVNRAQGEAEAIIAK 286 (414)
Q Consensus 217 ~~p~~i~~ai~-------~~~~Aeq~~~a~i~eAe~e~~~~i~~Ae~~a~~~~~~Ae---A~ae~~~~~AegeA~a~~~~ 286 (414)
.+|+.++++++ +...|.+++.....+||.++..++++||..+++..+.-+ -+++.....++-|+++++.+
T Consensus 174 kIPEaiRrN~E~ME~EkTKlLiA~ekQkVvEKeAETerkkAviEAEK~AqVa~I~~qqkl~EKetekr~~eiE~~~~Lar 253 (322)
T KOG2962|consen 174 KIPEAIRRNFELMEAEKTKLLIAAEKQKVVEKEAETERKKAVIEAEKNAQVAKILMQQKLMEKETEKRISEIEDAAFLAR 253 (322)
T ss_pred CChHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHhHhh
Confidence 99999999995 233455666677788999999999999999988876544 23555566677777777776
Q ss_pred HHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHhh-hcCCEEEeCCCCCChHHHHHHH
Q 038305 287 AQATAKGLAMVSQALKENGGLEAASLRVAEQYIQAFGNIA-KEGNTLLLPSSASSPANMIAQA 348 (414)
Q Consensus 287 a~AeA~a~~~~~eal~~~~~~~a~~~~~~~~~~e~l~~ia-~~~~~vvl~~~~~~~~~~~~~~ 348 (414)
-++.|++ +.++.....++..+.+...|+|..+.-| .++++++++.+ +++++...
T Consensus 254 ekskADA-----e~Y~a~k~AeaNKlkLTpEyLeLkk~~AIAsNsKIyfGd~---ip~~fv~~ 308 (322)
T KOG2962|consen 254 EKSKADA-----EYYRALKEAEANKLKLTPEYLELKKIDAIASNSKIYFGDK---IPNMFVDS 308 (322)
T ss_pred hhhhccH-----HHHHHHHHHhhccccCCHHHHHHHHHHHHHhcCeeeeccc---chHHHHHH
Confidence 6665554 4444444455567777888888776555 56778999764 55555443
No 15
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=99.97 E-value=7.3e-31 Score=243.75 Aligned_cols=176 Identities=35% Similarity=0.581 Sum_probs=164.4
Q ss_pred cceeEEEecCCeEEEEEeCcEEeE--EeCCCceeecCccceEEEeeccceEeeeCCCceeecCCCceEEEEEEEEEEecC
Q 038305 70 VNWGIRIVPEKKAFVIERFGKYVK--TLPSGIHFLIPFVDRIAYVHSLKEEAIPIPDQSAITKDNVSILIDGVLYVKIVD 147 (414)
Q Consensus 70 ~~~~~~~V~~g~~gVv~r~Gk~~~--~l~pG~hf~~P~i~~v~~v~~~r~q~~~~~~~~v~TkD~~~v~vd~~v~yrI~d 147 (414)
+++|+.+|++.|++||+|+|++.. .-|||+.|++||+|++..+ |+|.++++++.++++|+|.+.|.||++|+|||.|
T Consensus 51 ~~fclKiv~eYeR~VIfRLGRl~~~~~rGPGi~fvlPCIDt~~kV-DLRt~sfnVPpqeIltkDsvtvsVdAvVyyri~d 129 (288)
T KOG2621|consen 51 IWFCLKIVQEYERAVIFRLGRLRTGGARGPGLFFLLPCIDTFRKV-DLRTQSFNVPPQEILTKDSVTISVDAVVYYRISD 129 (288)
T ss_pred HHHHHHhhHHHhhhhheeeeeccccCCCCCCeEEEecccceeeee-eeeEEeecCCHHHHhcccceEEEeceEEEEEecC
Confidence 456889999999999999999976 5699999999999999999 9999999999999999999999999999999999
Q ss_pred ccccccccCCHHHHHHHHHHHHHHHHHhccchhhhHhhHHHHHHHHHHHHHHHHhhcCcEEeEEEEeecCCcHHHHHHHH
Q 038305 148 PKLASYGVENPIYAVIQLAQTTMRSELGKITLDKTFEERDTLNEKIVEAINVAARDWGLQCLRYEIRDISPPRGVRAAME 227 (414)
Q Consensus 148 p~~~~~~~~~~~~~i~~~~~~~lR~vi~~~tl~ei~~~R~~l~~~i~~~l~~~l~~~GI~I~~V~I~di~~p~~i~~ai~ 227 (414)
|...+.+++|.....+-+++..||+++|+.++.|++.+|+.++.+++..|.+....|||+|++|.|.||.+|.+.++++.
T Consensus 130 pi~sv~~V~Da~~sTr~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeRVEikDvrlp~qlqrama 209 (288)
T KOG2621|consen 130 PIIAVNNVGDADNATRLLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVERVEIKDVRLPAQLQRAMA 209 (288)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEEEEEeeeechHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 038305 228 MQAEAERKKRAQILESEGE 246 (414)
Q Consensus 228 ~~~~Aeq~~~a~i~eAe~e 246 (414)
..++|.+++.+++..||+|
T Consensus 210 aeAeA~reA~Akviaaege 228 (288)
T KOG2621|consen 210 AEAEATREARAKVIAAEGE 228 (288)
T ss_pred chhhhhhhhhhhHHHHHhh
Confidence 8777777766665554443
No 16
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=99.96 E-value=6.1e-29 Score=220.50 Aligned_cols=157 Identities=43% Similarity=0.701 Sum_probs=149.1
Q ss_pred eeEEEecCCeEEEEEeCcEEeEEeCCCceeecCccceEEEeeccceEeeeCCCceeecCCCceEEEEEEEEEEecCcccc
Q 038305 72 WGIRIVPEKKAFVIERFGKYVKTLPSGIHFLIPFVDRIAYVHSLKEEAIPIPDQSAITKDNVSILIDGVLYVKIVDPKLA 151 (414)
Q Consensus 72 ~~~~~V~~g~~gVv~r~Gk~~~~l~pG~hf~~P~i~~v~~v~~~r~q~~~~~~~~v~TkD~~~v~vd~~v~yrI~dp~~~ 151 (414)
.|+++|++|++||+++||++.++++||+||++||++++..+ +++.+.+.++...+.|+|+++|.+++++.|||.||..+
T Consensus 1 ~~~~~V~~g~~~v~~~~G~~~~~~~pG~~~~~P~~~~~~~~-~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~d~~~~ 79 (160)
T smart00244 1 AAIKVVGEGEAGVVERLGRVLRVLGPGLHFLIPFIDRVKKV-DLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVLDPLKA 79 (160)
T ss_pred CcEEEEcccEEEEEEecCccccccCCCEEEEecceeEEEEE-eeEEEeecCCceEEEecCCcEEEEeEEEEEEEccHHHH
Confidence 47999999999999999999999999999999999998888 99999999998889999999999999999999999998
Q ss_pred ccccCCHH-HHHHHHHHHHHHHHHhccchhhhHh-hHHHHHHHHHHHHHHHHhhcCcEEeEEEEeecCCcHHHHHHHHhh
Q 038305 152 SYGVENPI-YAVIQLAQTTMRSELGKITLDKTFE-ERDTLNEKIVEAINVAARDWGLQCLRYEIRDISPPRGVRAAMEMQ 229 (414)
Q Consensus 152 ~~~~~~~~-~~i~~~~~~~lR~vi~~~tl~ei~~-~R~~l~~~i~~~l~~~l~~~GI~I~~V~I~di~~p~~i~~ai~~~ 229 (414)
+++..+++ ..+.+.+++++|++++.+++++++. +|+++.+.+++.+++.+++|||+|++|.|+++++|+++.++|+++
T Consensus 80 ~~~~~~~~~~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~ai~~k 159 (160)
T smart00244 80 VYRVLDADYAVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQEAMEQQ 159 (160)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHHHHHhh
Confidence 88888877 4899999999999999999999997 799999999999999999999999999999999999999999865
No 17
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=99.96 E-value=6.8e-29 Score=224.05 Aligned_cols=170 Identities=26% Similarity=0.484 Sum_probs=119.2
Q ss_pred EEecCCeEEEEEeCcEEeEEeCCCceeecCccceEEEeeccceEeeeCCC--ceeecCCCceEEEEEEEEEEecCccccc
Q 038305 75 RIVPEKKAFVIERFGKYVKTLPSGIHFLIPFVDRIAYVHSLKEEAIPIPD--QSAITKDNVSILIDGVLYVKIVDPKLAS 152 (414)
Q Consensus 75 ~~V~~g~~gVv~r~Gk~~~~l~pG~hf~~P~i~~v~~v~~~r~q~~~~~~--~~v~TkD~~~v~vd~~v~yrI~dp~~~~ 152 (414)
++|++|++||++++|++..+++||+||++||++++..+ +++.+++++.. ..+.|+|++.+.+++.+.|+|.++..+.
T Consensus 1 ~~V~~g~~~V~~~~G~~~~~~~~G~~~~~P~~~~~~~~-~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i~~~~~~~ 79 (179)
T PF01145_consen 1 YTVPPGEVGVVVRFGKVKDVLGPGLHFVIPFIQKVYVY-PTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRIEDPPKFV 79 (179)
T ss_dssp -------------------------------EEE--S---SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEES-CCCCC
T ss_pred CEeCCCEEEEEEECCeEeEEECCCeEEEeCCcCeEEEE-eCEEEecccchhhhhhhhcccceeeeeEEEEEEechHHHHH
Confidence 58999999999999999999999999999999998877 99999999998 7899999999999999999998888776
Q ss_pred ccc----CCHHHHHHHHHHHHHHHHHhccchhhhHhhHHHHHHHHHHHHHHHHhhcCcEEeEEEEeecCCcHHHHHHHHh
Q 038305 153 YGV----ENPIYAVIQLAQTTMRSELGKITLDKTFEERDTLNEKIVEAINVAARDWGLQCLRYEIRDISPPRGVRAAMEM 228 (414)
Q Consensus 153 ~~~----~~~~~~i~~~~~~~lR~vi~~~tl~ei~~~R~~l~~~i~~~l~~~l~~~GI~I~~V~I~di~~p~~i~~ai~~ 228 (414)
... .+++..|...+++++|++++++++++++++|.++.+.+.+.+++.+.+|||+|.+|.|+++++|+++.++|++
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~i~~ 159 (179)
T PF01145_consen 80 QNYEGGEEDPENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEAIEE 159 (179)
T ss_dssp CCCSS-HCHHHHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHHHHH
T ss_pred HhhhcchhhhhhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHHHHH
Confidence 665 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHH-HHHHHHHHH
Q 038305 229 QAEAERKK-RAQILESEG 245 (414)
Q Consensus 229 ~~~Aeq~~-~a~i~eAe~ 245 (414)
++.+++++ ++.+.+||+
T Consensus 160 ~~~a~~~~~~~~~~~a~~ 177 (179)
T PF01145_consen 160 KQRAEQEAQQAEIERAEA 177 (179)
T ss_dssp HHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 99998887 555544444
No 18
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4e-25 Score=198.56 Aligned_cols=236 Identities=19% Similarity=0.262 Sum_probs=193.1
Q ss_pred cccceeEEEecCCeEEEEE-eCcEEe-EEeCCCceeecCccceEEEeeccceEeeeCCCceeecCCCceEEEEEEEEEEe
Q 038305 68 PPVNWGIRIVPEKKAFVIE-RFGKYV-KTLPSGIHFLIPFVDRIAYVHSLKEEAIPIPDQSAITKDNVSILIDGVLYVKI 145 (414)
Q Consensus 68 ~~~~~~~~~V~~g~~gVv~-r~Gk~~-~~l~pG~hf~~P~i~~v~~v~~~r~q~~~~~~~~v~TkD~~~v~vd~~v~yrI 145 (414)
..+..++|.|+.||+++++ |+|.+. +++..|+||.+||+++-.++ |+|-....+... ..|+|-++|++...|--|-
T Consensus 32 y~v~~sl~nVdgGHRAI~fnRi~Gik~~iy~EGtHf~iPwfe~pIiY-DvRarP~~i~S~-tGskDLQmVnI~lRVLsRP 109 (290)
T KOG3090|consen 32 YGVTQSLYNVDGGHRAIVFNRIGGIKDDIYPEGTHFRIPWFERPIIY-DVRARPRLISSP-TGSKDLQMVNIGLRVLSRP 109 (290)
T ss_pred heecceeEeecCCceEEEEeccccchhccccCCceEeeeccccceee-eeccCcccccCC-CCCcceeEEEeeeEEecCC
Confidence 3455689999999999998 788776 66799999999999998877 999988888776 6699999999998886553
Q ss_pred cC---ccc-cccccCCHHHHHHHHHHHHHHHHHhccchhhhHhhHHHHHHHHHHHHHHHHhhcCcEEeEEEEeecCCcHH
Q 038305 146 VD---PKL-ASYGVENPIYAVIQLAQTTMRSELGKITLDKTFEERDTLNEKIVEAINVAARDWGLQCLRYEIRDISPPRG 221 (414)
Q Consensus 146 ~d---p~~-~~~~~~~~~~~i~~~~~~~lR~vi~~~tl~ei~~~R~~l~~~i~~~l~~~l~~~GI~I~~V~I~di~~p~~ 221 (414)
.. |.. ...+.++.+..+-.++.+.|+.++++++..++++.|+.++..+++.|-++..++.|.+++|.|+.++|.++
T Consensus 110 ~~~~Lp~iyrtLG~~y~ERVLPSIinEvLKaVVAqfNASqLITQRe~VSrliRk~L~eRA~~Fni~LDDVSiT~l~F~~e 189 (290)
T KOG3090|consen 110 MADQLPEIYRTLGQNYDERVLPSIINEVLKAVVAQFNASQLITQREQVSRLIRKILTERAADFNIALDDVSITELTFGKE 189 (290)
T ss_pred ChhhhHHHHHHhccCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccceEeecceeeeeecCHH
Confidence 22 111 23456778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 038305 222 VRAAMEMQAEAERKKRAQILESEGERQAHINIADGKKTSVILESEAAKMDQVNRAQGEAEAIIAKAQATAKGLAMVSQAL 301 (414)
Q Consensus 222 i~~ai~~~~~Aeq~~~a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~~~~~AegeA~a~~~~a~AeA~a~~~~~eal 301 (414)
+..+++.++.|.|++++...- +..|+.+++..+.+|+|||++ .+++++|+
T Consensus 190 fTaAiEaKQvA~QeAqRA~F~-------------------VekA~qek~~~ivrAqGEaks-----------AqliGeAi 239 (290)
T KOG3090|consen 190 FTAAIEAKQVAAQEAQRAKFI-------------------VEKAEQEKQSAIVRAQGEAKS-----------AQLIGEAI 239 (290)
T ss_pred HHHHHHHHHHHHHHHhhhhhh-------------------hHHHHHhhhhhhhhhccchHH-----------HHHHHHHH
Confidence 999999999999988865443 233555556666667776654 56777787
Q ss_pred HhcCchhhHHHHHHHHHHHHHHHhhhcCCEEEeCCC
Q 038305 302 KENGGLEAASLRVAEQYIQAFGNIAKEGNTLLLPSS 337 (414)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~e~l~~ia~~~~~vvl~~~ 337 (414)
+ +++.+..++..+.--+.-+.+++++|+++++++
T Consensus 240 ~--nn~~fi~Lrki~aAr~IA~tia~S~NkvyL~~~ 273 (290)
T KOG3090|consen 240 K--NNPAFITLRKIEAAREIAQTIASSANKVYLSSD 273 (290)
T ss_pred h--CCccceeehhHHHHHHHHHHHhcCCCeEEeccc
Confidence 7 346667777666666677777889999999886
No 19
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.90 E-value=5.5e-22 Score=188.61 Aligned_cols=179 Identities=16% Similarity=0.228 Sum_probs=143.9
Q ss_pred EEEecCCeEEEEEeCcEEeEEeCCCceeecCccceEEEeeccceEeeeCCCceeecCCCceEEEEEEEEEEecC--ccc-
Q 038305 74 IRIVPEKKAFVIERFGKYVKTLPSGIHFLIPFVDRIAYVHSLKEEAIPIPDQSAITKDNVSILIDGVLYVKIVD--PKL- 150 (414)
Q Consensus 74 ~~~V~~g~~gVv~r~Gk~~~~l~pG~hf~~P~i~~v~~v~~~r~q~~~~~~~~v~TkD~~~v~vd~~v~yrI~d--p~~- 150 (414)
|+++.+++..++.-+|.-...+-+| .|.+|| +++..+ |+...++++..+.+.|+.|+++.|.++.+.+|.. +..
T Consensus 2 f~~~~~~~~l~itg~g~~~~~lv~~-~wvf~w-q~~q~~-~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~el 78 (428)
T KOG2668|consen 2 FKVAGASQYLAITGGGIEDIKLVKK-SWVFPW-QQCTVF-DVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADEL 78 (428)
T ss_pred CccCCccceEEeecccccCceeccc-ceeeee-eeeeEE-eecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHHH
Confidence 5567788888888777665555555 466677 888888 9999999999999999999999999888888753 222
Q ss_pred -------ccc-ccCCHHHHHHHHHHHHHHHHHhccchhhhHhhHHHHHHHHHHHHHHHHhhcCcEEeEEEEeecCCcH--
Q 038305 151 -------ASY-GVENPIYAVIQLAQTTMRSELGKITLDKTFEERDTLNEKIVEAINVAARDWGLQCLRYEIRDISPPR-- 220 (414)
Q Consensus 151 -------~~~-~~~~~~~~i~~~~~~~lR~vi~~~tl~ei~~~R~~l~~~i~~~l~~~l~~~GI~I~~V~I~di~~p~-- 220 (414)
|+. +..+...++...++++.|.++++||+++||.+|++|...+++..+.+|.++||.|.+..|.|+.+.+
T Consensus 79 L~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g~ 158 (428)
T KOG2668|consen 79 LLYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPGH 158 (428)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccch
Confidence 122 2235677888999999999999999999999999999999999999999999999999999999777
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038305 221 GVRAAMEMQAEAERKKRAQILESEGERQAHINIAD 255 (414)
Q Consensus 221 ~i~~ai~~~~~Aeq~~~a~i~eAe~e~~~~i~~Ae 255 (414)
+|..++.+...++..+++.|-.||++++.-+.+|.
T Consensus 159 ~YlssLGka~taev~rdArIgvAEAk~eaGikEa~ 193 (428)
T KOG2668|consen 159 EYLSSLGKATTAEVARDARIGVAEAKREAGIKEAT 193 (428)
T ss_pred HHHHHhhhHHHHHHHhhcccchHHhhhhcchhhhh
Confidence 79999988777777666666666655544333333
No 20
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.2e-23 Score=189.08 Aligned_cols=242 Identities=19% Similarity=0.212 Sum_probs=191.8
Q ss_pred eeccccceeEEEecCCeEEEEE-eCcEE-eEEeCCCceeecCccceEEEeeccceEeeeCCCceeecCCCceEEEEEEEE
Q 038305 65 DIIPPVNWGIRIVPEKKAFVIE-RFGKY-VKTLPSGIHFLIPFVDRIAYVHSLKEEAIPIPDQSAITKDNVSILIDGVLY 142 (414)
Q Consensus 65 ~i~~~~~~~~~~V~~g~~gVv~-r~Gk~-~~~l~pG~hf~~P~i~~v~~v~~~r~q~~~~~~~~v~TkD~~~v~vd~~v~ 142 (414)
+..-++.+++|.|+.||++|++ ||-.+ ..+++.|.||.+||.++-..+ +.+.....++.. ..|+|-.+|++...+.
T Consensus 18 v~~~~~~s~ly~vdgg~ravifdrf~gv~~~vvgegthflipw~qk~~i~-d~rs~p~~v~~i-tGskdLQ~VniTlril 95 (271)
T KOG3083|consen 18 VAGGVVNSALYNVDGGHRAVIFDRFRGVQDQVVGEGTHFLIPWVQKPIIF-DCRSRPRNVPVI-TGSKDLQNVNITLRIL 95 (271)
T ss_pred HhhhhhhhhhcccCCCceeEEeecccchhhhcccCCceeeeeeccCcEEE-eccCCCcccccc-cCchhhhcccceEEEE
Confidence 3456788999999999999998 67544 467899999999999998877 899888888776 5699999999998888
Q ss_pred EEecCc-ccc---ccccCCHHHHHHHHHHHHHHHHHhccchhhhHhhHHHHHHHHHHHHHHHHhhcCcEEeEEEEeecCC
Q 038305 143 VKIVDP-KLA---SYGVENPIYAVIQLAQTTMRSELGKITLDKTFEERDTLNEKIVEAINVAARDWGLQCLRYEIRDISP 218 (414)
Q Consensus 143 yrI~dp-~~~---~~~~~~~~~~i~~~~~~~lR~vi~~~tl~ei~~~R~~l~~~i~~~l~~~l~~~GI~I~~V~I~di~~ 218 (414)
||-... ..+ ..+.++.+..+-.+..+.|++++++++..++++.|+.++..+.+.+.+....+||.+++|.|+.+++
T Consensus 96 ~rp~~sqLP~If~~~G~dyDErVLpsI~~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltf 175 (271)
T KOG3083|consen 96 FRPVVSQLPCIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTF 175 (271)
T ss_pred ecccccccchHHHhhcccccccccccchHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhh
Confidence 874321 123 3456778888889999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 038305 219 PRGVRAAMEMQAEAERKKRAQILESEGERQAHINIADGKKTSVILESEAAKMDQVNRAQGEAEAIIAKAQATAKGLAMVS 298 (414)
Q Consensus 219 p~~i~~ai~~~~~Aeq~~~a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~~~~~AegeA~a~~~~a~AeA~a~~~~~ 298 (414)
..++.++++.|+.|+|++++...- +..||.++.+.+++||||+++....+
T Consensus 176 GkEFt~AvE~KQVAQQEAErarFv-------------------VeKAeQqk~aavIsAEGds~aA~li~----------- 225 (271)
T KOG3083|consen 176 GKEFTEAVEAKQVAQQEAERARFV-------------------VEKAEQQKKAAVISAEGDSKAAELIA----------- 225 (271)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHhhhhhhheeecccchHHHHHHH-----------
Confidence 999999999999999998866543 23355666677788888877655444
Q ss_pred HHHHhcCchhhHHHHHHHHHHHHHHHhhhcCCEEEeCCCCC
Q 038305 299 QALKENGGLEAASLRVAEQYIQAFGNIAKEGNTLLLPSSAS 339 (414)
Q Consensus 299 eal~~~~~~~a~~~~~~~~~~e~l~~ia~~~~~vvl~~~~~ 339 (414)
.++...|. ...++...+.--+.--.++.+.|+.|+|.+.+
T Consensus 226 ~sla~aG~-gLielrrlEAa~dia~~Ls~s~nv~YLp~g~s 265 (271)
T KOG3083|consen 226 NSLATAGD-GLIELRRLEAAEDIAYQLSRSRNVTYLPAGQS 265 (271)
T ss_pred HHHhhcCC-ceeeehhhhhHHHHHHHHhcCCCceeccCCcc
Confidence 44444342 23455444444455555667899999997643
No 21
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.86 E-value=2.9e-19 Score=182.43 Aligned_cols=159 Identities=19% Similarity=0.266 Sum_probs=130.7
Q ss_pred cccce--eEEEe-cCCeEEEEEe--C------cEEeEEeCCCceeecCccceEEEeeccceEeeeCCCceeecCCCceEE
Q 038305 68 PPVNW--GIRIV-PEKKAFVIER--F------GKYVKTLPSGIHFLIPFVDRIAYVHSLKEEAIPIPDQSAITKDNVSIL 136 (414)
Q Consensus 68 ~~~~~--~~~~V-~~g~~gVv~r--~------Gk~~~~l~pG~hf~~P~i~~v~~v~~~r~q~~~~~~~~v~TkD~~~v~ 136 (414)
+++|+ .+|++ +++++.|+.. | |.-.+++.+|+||++|+++...++ +++...+++....++|+||++++
T Consensus 26 v~if~~~~~y~~a~~~~aLI~~g~~~g~~~~~g~~~~vV~gGg~~v~Pi~q~~~r~-~l~~i~l~v~~~~v~t~Dg~p~~ 104 (548)
T COG2268 26 VLIFFGKRFYIIARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPIFQTIERM-SLTTIKLEVEIDNVYTKDGMPLN 104 (548)
T ss_pred HHHHHhheeEEecCCCceEEEeccccCCcccccCCccEEecCceEEecceeeeEEe-eeeeeeeeeeeeeeEecCCCccc
Confidence 34444 55654 5555555442 1 444578899999999999999999 99999999997789999999999
Q ss_pred EEEEEEEEecCcccc------ccccC----CHHHHHHHHHHHHHHHHHhccchhhhHhhHHHHHHHHHHHHHHHHhhcCc
Q 038305 137 IDGVLYVKIVDPKLA------SYGVE----NPIYAVIQLAQTTMRSELGKITLDKTFEERDTLNEKIVEAINVAARDWGL 206 (414)
Q Consensus 137 vd~~v~yrI~dp~~~------~~~~~----~~~~~i~~~~~~~lR~vi~~~tl~ei~~~R~~l~~~i~~~l~~~l~~~GI 206 (414)
++++.+.+|.|.... .++.. +....+...++++||.+++++|+.+++.+|..|.+.+.+.+..+|.+.|+
T Consensus 105 v~~~a~v~i~~~~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~k~Gl 184 (548)
T COG2268 105 VEAVAYVKIGDTFQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGL 184 (548)
T ss_pred eeEEEEEEecCCHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHHhcCe
Confidence 999999999885431 22222 56677888999999999999999999999999999999999999999999
Q ss_pred EEeEEEEeecCCc-------HHHHHHHH
Q 038305 207 QCLRYEIRDISPP-------RGVRAAME 227 (414)
Q Consensus 207 ~I~~V~I~di~~p-------~~i~~ai~ 227 (414)
.|+++.|.|+..+ ..|.++..
T Consensus 185 ~l~s~~I~~i~d~~~~~~d~~~yLda~G 212 (548)
T COG2268 185 VLDSLAINDINDTSKENQDPNNYLDALG 212 (548)
T ss_pred eeeeeeecccccccccccChhhhhhhcC
Confidence 9999999999988 77777765
No 22
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.84 E-value=4.1e-20 Score=171.40 Aligned_cols=161 Identities=21% Similarity=0.221 Sum_probs=133.5
Q ss_pred cccceeEEEecCCeEEEEEeCcEEeEEeCCCceeec----Cccc---------------eEEEeeccceEeeeCC--C--
Q 038305 68 PPVNWGIRIVPEKKAFVIERFGKYVKTLPSGIHFLI----PFVD---------------RIAYVHSLKEEAIPIP--D-- 124 (414)
Q Consensus 68 ~~~~~~~~~V~~g~~gVv~r~Gk~~~~l~pG~hf~~----P~i~---------------~v~~v~~~r~q~~~~~--~-- 124 (414)
.+.+.|.++|++|+++|++++|++.++++||.|+.+ |++. .+.++ +.+.+..... .
T Consensus 10 ~i~~~s~~iV~e~~~av~~~~Gk~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~ 88 (207)
T cd03408 10 EIKNGSQLIVREGQAAVFVNEGKVADVFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEVYFF-NTRVFTDLLWGTPAP 88 (207)
T ss_pred ccccCCEEEEcCCcEEEEEECCEEEEEecCCcceeeecCccHHHHhcChhhhCcCCceeEEEEE-ECEEEeccccCCCCC
Confidence 455678999999999999999999999988877665 4432 24555 6666554321 1
Q ss_pred --ceeecCCCceEEEEEEEEEEecCcccccccc---------CCHHHHHHHHHHHHHHHHHhccchhhhHhh--HHHHHH
Q 038305 125 --QSAITKDNVSILIDGVLYVKIVDPKLASYGV---------ENPIYAVIQLAQTTMRSELGKITLDKTFEE--RDTLNE 191 (414)
Q Consensus 125 --~~v~TkD~~~v~vd~~v~yrI~dp~~~~~~~---------~~~~~~i~~~~~~~lR~vi~~~tl~ei~~~--R~~l~~ 191 (414)
....|.|+++|.+++++.|||.||..++.++ ++....+.+.+++++|++++++++++++.+ |+++.+
T Consensus 89 ~~~~~~~~~~v~v~v~~~~~~kI~Dp~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~~ 168 (207)
T cd03408 89 VFGRDSEFGGVPLRAFGTYSLKVTDPVLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELSK 168 (207)
T ss_pred eeeeCCccceEEEEeeEEEEEEEcCHHHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHHH
Confidence 1245788899999999999999998876443 246678999999999999999999999966 999999
Q ss_pred HHHHHHHHHHhhcCcEEeEEEEeecCCcHHHHHHHHhh
Q 038305 192 KIVEAINVAARDWGLQCLRYEIRDISPPRGVRAAMEMQ 229 (414)
Q Consensus 192 ~i~~~l~~~l~~~GI~I~~V~I~di~~p~~i~~ai~~~ 229 (414)
.+++.+.+.+.+|||+|.+|.|++|++|+++.++|.++
T Consensus 169 ~v~~~l~~~~~~~Gi~i~~v~I~~i~~p~e~~~ai~~r 206 (207)
T cd03408 169 AVREALAPWFASFGLELVSVYIESISYPDEVQKLIDKR 206 (207)
T ss_pred HHHHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHhh
Confidence 99999999999999999999999999999999998753
No 23
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=99.73 E-value=2.1e-17 Score=141.92 Aligned_cols=115 Identities=23% Similarity=0.377 Sum_probs=105.2
Q ss_pred ccceEeeeCCCceeecCCCceEEEEEEEEEEecCcccccc-------c--cCCHHHHHHHHHHHHHHHHHhccchhhhHh
Q 038305 114 SLKEEAIPIPDQSAITKDNVSILIDGVLYVKIVDPKLASY-------G--VENPIYAVIQLAQTTMRSELGKITLDKTFE 184 (414)
Q Consensus 114 ~~r~q~~~~~~~~v~TkD~~~v~vd~~v~yrI~dp~~~~~-------~--~~~~~~~i~~~~~~~lR~vi~~~tl~ei~~ 184 (414)
+++.+.++++.+.++|+|++.+.|+++++|||.||..+.. + .++....+.+.+++++|.++|+|+++++++
T Consensus 3 ~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~el~~ 82 (128)
T cd03399 3 SLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEEIYE 82 (128)
T ss_pred cccceeeeccccceecCCCcEEEEEEEEEEEeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 7899999999999999999999999999999999886432 1 244677888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhcCcEEeEEEEeecCCcHHHHHHHHh
Q 038305 185 ERDTLNEKIVEAINVAARDWGLQCLRYEIRDISPPRGVRAAMEM 228 (414)
Q Consensus 185 ~R~~l~~~i~~~l~~~l~~~GI~I~~V~I~di~~p~~i~~ai~~ 228 (414)
+|++|.+++.+.++..+.+|||+|.+|.|++|++|++|.+++.+
T Consensus 83 ~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~~~ 126 (128)
T cd03399 83 DRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNLGD 126 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHcCC
Confidence 99999999999999999999999999999999999999988764
No 24
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.68 E-value=2.2e-16 Score=134.75 Aligned_cols=115 Identities=19% Similarity=0.224 Sum_probs=100.2
Q ss_pred ccceEeeeCCCceeecCCCceEEEEEEEEEEecCcccc-c---cccCCHHHHHHHHHHHHHHHHHhccchhhhH-hhHHH
Q 038305 114 SLKEEAIPIPDQSAITKDNVSILIDGVLYVKIVDPKLA-S---YGVENPIYAVIQLAQTTMRSELGKITLDKTF-EERDT 188 (414)
Q Consensus 114 ~~r~q~~~~~~~~v~TkD~~~v~vd~~v~yrI~dp~~~-~---~~~~~~~~~i~~~~~~~lR~vi~~~tl~ei~-~~R~~ 188 (414)
+++.++.+.+ ..++|+||+.|.++++++|||.++..+ + ++....+..|.+.+++++|+++|++++++++ ++|++
T Consensus 4 ~~r~~~~~~~-~~v~T~D~~~v~vd~~v~y~V~~~~~~~~~~~~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R~~ 82 (124)
T cd03400 4 STRLQEVDEK-IDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRKE 82 (124)
T ss_pred cceeeecccc-eEEECCCCCEEEEEEEEEEEEChhhHHHHHHHhCcchhheeechhHHHHHHHHhcCCCHHHHhhhhHHH
Confidence 6677776654 459999999999999999999866542 2 2333456678999999999999999999999 58999
Q ss_pred HHHHHHHHHHHHHhhcCcEEeEEEEeecCCcHHHHHHHHhh
Q 038305 189 LNEKIVEAINVAARDWGLQCLRYEIRDISPPRGVRAAMEMQ 229 (414)
Q Consensus 189 l~~~i~~~l~~~l~~~GI~I~~V~I~di~~p~~i~~ai~~~ 229 (414)
|.+++++.+++.+.+|||+|.+|+|++++||+++.++++++
T Consensus 83 i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~k 123 (124)
T cd03400 83 IESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAK 123 (124)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHHhc
Confidence 99999999999999999999999999999999999999875
No 25
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=99.59 E-value=2.8e-14 Score=119.60 Aligned_cols=115 Identities=38% Similarity=0.667 Sum_probs=102.5
Q ss_pred cceEeeeCCCceeecCCCceEEEEEEEEEEecCccccccccCCH--HHHHHHHHHHHHHHHHhccchhhhHhhHHHHHHH
Q 038305 115 LKEEAIPIPDQSAITKDNVSILIDGVLYVKIVDPKLASYGVENP--IYAVIQLAQTTMRSELGKITLDKTFEERDTLNEK 192 (414)
Q Consensus 115 ~r~q~~~~~~~~v~TkD~~~v~vd~~v~yrI~dp~~~~~~~~~~--~~~i~~~~~~~lR~vi~~~tl~ei~~~R~~l~~~ 192 (414)
.+..+.......+.|+||++|.+++++.|+|.+|..+.+..... ...+...+.+++|++++.++++++.++|++|.+.
T Consensus 4 ~~~~~~~~~~~~~~t~d~~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~ 83 (121)
T cd02106 4 LRRQTLDVPPQEVLTKDNVPVRVDAVVQYRVVDPVKALYNVRDPEDEEALRQLAQSALRSVIGKMTLDELLEDRDEIAAE 83 (121)
T ss_pred ceeEEecCCCceEEecCCCEEEEEEEEEEEEeCHHHHHHhcCCccHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHH
Confidence 34455566667799999999999999999999998666655443 4789999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCcEEeEEEEeecCCcHHHHHHHHhh
Q 038305 193 IVEAINVAARDWGLQCLRYEIRDISPPRGVRAAMEMQ 229 (414)
Q Consensus 193 i~~~l~~~l~~~GI~I~~V~I~di~~p~~i~~ai~~~ 229 (414)
+++.+...+..|||+|.+|.|+++++|+++.++++++
T Consensus 84 v~~~l~~~~~~~Gi~i~~v~i~~i~~~~~~~~ai~~~ 120 (121)
T cd02106 84 VREALQEDLDKYGIEVVDVRIKDIDPPEEVQEAMEDR 120 (121)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCHHHHHHHHhh
Confidence 9999999999999999999999999999999999764
No 26
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=99.31 E-value=1.2e-10 Score=108.25 Aligned_cols=159 Identities=23% Similarity=0.265 Sum_probs=122.9
Q ss_pred cceeEEEecCCeEEEEEeCcEEeEEeCCCceee-------------------cCccceEEEeeccceEe-eeCCCc-eee
Q 038305 70 VNWGIRIVPEKKAFVIERFGKYVKTLPSGIHFL-------------------IPFVDRIAYVHSLKEEA-IPIPDQ-SAI 128 (414)
Q Consensus 70 ~~~~~~~V~~g~~gVv~r~Gk~~~~l~pG~hf~-------------------~P~i~~v~~v~~~r~q~-~~~~~~-~v~ 128 (414)
-+.+-.+|++|+++|+++-|++..+.+||.|-+ .||-..|.++ +++... ..+... ++.
T Consensus 12 ~~GS~LiV~egQ~Avfv~~G~i~d~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~~eVyFv-n~~~~~~~kwGT~~pi~ 90 (211)
T PF13421_consen 12 KNGSQLIVREGQCAVFVNDGKIADVFGPGRYTLDTDNIPILSTLKNWKFGGESPFKAEVYFV-NTKEITNIKWGTPNPIP 90 (211)
T ss_pred cCCCEEEECCCCEEEEEECCEEEEEecCceEEEecCCchHHHHHhhhccCCCCCceEEEEEE-ECeEecCCccCCCCCee
Confidence 345678999999999999999999889999953 3555566666 555542 233222 122
Q ss_pred cCC----CceEEEEEEEEEEecCcccccc---------ccCCHHHHHHHHHHHHHHHHHhc--cchhhhHhhHHHHHHHH
Q 038305 129 TKD----NVSILIDGVLYVKIVDPKLASY---------GVENPIYAVIQLAQTTMRSELGK--ITLDKTFEERDTLNEKI 193 (414)
Q Consensus 129 TkD----~~~v~vd~~v~yrI~dp~~~~~---------~~~~~~~~i~~~~~~~lR~vi~~--~tl~ei~~~R~~l~~~i 193 (414)
-.| .+.|..-+.+.|||.||..++. ..++....+++.+...+-++++. +++.++...-.+|++.+
T Consensus 91 ~~D~~~~~v~lra~G~ys~rI~Dp~~F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a~~~eis~~~ 170 (211)
T PF13421_consen 91 YRDPEYGPVRLRAFGTYSFRIVDPVLFIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPAHLDEISEAL 170 (211)
T ss_pred ecCCCCCcEEEEEEEEEEEEEeCHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 222 3567778999999999987543 33455666777777777777774 68888889999999999
Q ss_pred HHHHHHHHhhcCcEEeEEEEeecCCcHHHHHHHHhh
Q 038305 194 VEAINVAARDWGLQCLRYEIRDISPPRGVRAAMEMQ 229 (414)
Q Consensus 194 ~~~l~~~l~~~GI~I~~V~I~di~~p~~i~~ai~~~ 229 (414)
++.++..+..+||+|.++.|.+|++|+++.+.+.+.
T Consensus 171 ~~~l~~~~~~~Gi~l~~f~I~~i~~pee~~~~i~~~ 206 (211)
T PF13421_consen 171 KEKLNPEFERYGIELVDFGIESISFPEEVQKAIDKR 206 (211)
T ss_pred HHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHHH
Confidence 999999999999999999999999999999999654
No 27
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=98.89 E-value=6.3e-08 Score=91.04 Aligned_cols=161 Identities=17% Similarity=0.236 Sum_probs=124.7
Q ss_pred ccceeEEEecCCeEEEEEeCcEEeEEe-CCCce-------------------eecCccceEEEeeccceEe-eeCCC-ce
Q 038305 69 PVNWGIRIVPEKKAFVIERFGKYVKTL-PSGIH-------------------FLIPFVDRIAYVHSLKEEA-IPIPD-QS 126 (414)
Q Consensus 69 ~~~~~~~~V~~g~~gVv~r~Gk~~~~l-~pG~h-------------------f~~P~i~~v~~v~~~r~q~-~~~~~-~~ 126 (414)
+-..++.+|.|++-++.+..|++..+. ++|.+ |..|+-+.|.++ +++++. +.+.. ++
T Consensus 36 I~nGs~l~Vrp~qmamfvn~G~I~dvf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~k~eVyfv-ntqe~~girwGT~qp 114 (345)
T COG4260 36 IQNGSILHVRPNQMAMFVNGGQIADVFAEAGYYKVTTQTLPSLFTLKRFKFGFESPFKQEVYFV-NTQEIKGIRWGTPQP 114 (345)
T ss_pred eccCcEEEEecCceEEEEcCCEEEeeecCCceeEeeecccchhhhhhcceecCCCcccceEEEE-ecceecceecCCCCC
Confidence 344578899999999999999988776 47755 234555666666 777766 55542 23
Q ss_pred eecCC-----CceEEEEEEEEEEecCcccc---------ccccCCHHHHHHHHHHHHHHHHHhccchhhh--HhhHHHHH
Q 038305 127 AITKD-----NVSILIDGVLYVKIVDPKLA---------SYGVENPIYAVIQLAQTTMRSELGKITLDKT--FEERDTLN 190 (414)
Q Consensus 127 v~TkD-----~~~v~vd~~v~yrI~dp~~~---------~~~~~~~~~~i~~~~~~~lR~vi~~~tl~ei--~~~R~~l~ 190 (414)
+.-.| ++.+...+++.|+|.||..+ .|.+++.++.+...+..+|...|..+-..-. -.+--+|+
T Consensus 115 in~~dn~~~g~l~lRa~Gtys~kvtDpi~fi~~I~g~~dvy~v~di~~q~ls~~m~al~tai~q~G~~~~~ltan~~els 194 (345)
T COG4260 115 INYFDNFYNGELFLRAHGTYSIKVTDPILFIQQIPGNRDVYTVDDINQQYLSEFMGALATAINQSGVRFSFLTANQMELS 194 (345)
T ss_pred eecccccccceeEEeecceEEEEecCHHHHHHhccCCCceEEHHHHHHHHHHHHHHHHHHHHHhcCceehhhhhhHHHHH
Confidence 33334 46777789999999999774 3566777888888888888888888754433 37788999
Q ss_pred HHHHHHHHHHHhhcCcEEeEEEEeecCCcHHHHHHHHhhH
Q 038305 191 EKIVEAINVAARDWGLQCLRYEIRDISPPRGVRAAMEMQA 230 (414)
Q Consensus 191 ~~i~~~l~~~l~~~GI~I~~V~I~di~~p~~i~~ai~~~~ 230 (414)
..+.+.|.+++..+|..|++|+|-+|++|++.+..|..+.
T Consensus 195 k~m~e~Ld~q~~q~Gm~v~sfqvaSisypde~Q~lin~r~ 234 (345)
T COG4260 195 KYMAEVLDEQWTQYGMAVDSFQVASISYPDESQALINMRN 234 (345)
T ss_pred HHHHHHHhHHHHhhCceEeeEEEEEecCcHHHHHHHHhhc
Confidence 9999999999999999999999999999999999997543
No 28
>PTZ00491 major vault protein; Provisional
Probab=98.86 E-value=1.9e-06 Score=92.64 Aligned_cols=185 Identities=14% Similarity=0.164 Sum_probs=120.5
Q ss_pred EEEecCCeEEEEEe--CcEEeEEeCCCceeecCccceEEEeeccce-----------EeeeCCC------ceeecCCCce
Q 038305 74 IRIVPEKKAFVIER--FGKYVKTLPSGIHFLIPFVDRIAYVHSLKE-----------EAIPIPD------QSAITKDNVS 134 (414)
Q Consensus 74 ~~~V~~g~~gVv~r--~Gk~~~~l~pG~hf~~P~i~~v~~v~~~r~-----------q~~~~~~------~~v~TkD~~~ 134 (414)
.|.||-+.+.=||- -++-.-+.||-+.+.-|- +.+..+ ++.. ..+.+.+ ..+-|+|...
T Consensus 464 ~~~vphn~avqvydyk~~~~Rvv~GP~~v~L~pd-E~ftvl-sLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhAr 541 (850)
T PTZ00491 464 TYKVPHNAAVQLYDYKTKKSRVVFGPDLVMLEPD-EEFTVL-SLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHAR 541 (850)
T ss_pred EEEcCCCcEEEEEEcccCceEEEECCceEEecCC-CceEEE-EecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccce
Confidence 45677777666654 344444568888888775 344333 2221 1111111 2367999999
Q ss_pred EEEEEEEEEEec----Ccc--ccccccCCHHHHHHHHHHHHHHHHHhccchhhhHhh-HHHHHHHHHHHHHHH-------
Q 038305 135 ILIDGVLYVKIV----DPK--LASYGVENPIYAVIQLAQTTMRSELGKITLDKTFEE-RDTLNEKIVEAINVA------- 200 (414)
Q Consensus 135 v~vd~~v~yrI~----dp~--~~~~~~~~~~~~i~~~~~~~lR~vi~~~tl~ei~~~-R~~l~~~i~~~l~~~------- 200 (414)
+.+...++|+.. ||. ...|.+.|+-.-.-..+.+.+|..+++.+++++..+ -.-|.+.++....+.
T Consensus 542 L~l~LsYnW~F~v~~~d~~~~~k~Fsv~DFvGd~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~r~~l 621 (850)
T PTZ00491 542 LALQLSYNWYFDVTDGNPEDAQKCFSVPDFVGDACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEVRDSL 621 (850)
T ss_pred EEEEEEEEEEEecCCCChhhHhheeccCchHHHHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCccccce
Confidence 999999999986 454 468999999999999999999999999999999944 444555555522221
Q ss_pred -HhhcCcEEeEEEEeecCCcH-HHHHHHHh-------------hHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhhh
Q 038305 201 -ARDWGLQCLRYEIRDISPPR-GVRAAMEM-------------QAEAERKKRAQILESEG--ERQAHINIADGKKTS 260 (414)
Q Consensus 201 -l~~~GI~I~~V~I~di~~p~-~i~~ai~~-------------~~~Aeq~~~a~i~eAe~--e~~~~i~~Ae~~a~~ 260 (414)
+...|+.|.+|.|+++.|=+ ..++++++ ...|.+++++..-+|++ ++++...+|+++.++
T Consensus 622 ~F~~N~lvit~VDvqsvEpvD~~tr~~LqkSVqlAiEItt~sqEa~A~h~a~~~eQea~g~Lerqk~~d~~~aE~~r 698 (850)
T PTZ00491 622 RFPANNLVITNVDVQSVEPVDERTRDSLQKSVQLAIEITTKSQEAAARHQAELLEQEARGRLERQKMHDKAKAEEQR 698 (850)
T ss_pred EEccCCeEEEEEeeeeeeecCHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHhhchhHHHhhhhHHHHHHHH
Confidence 34679999999999999643 45555542 33455555555555554 344444445544433
No 29
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=97.62 E-value=0.00036 Score=66.18 Aligned_cols=95 Identities=20% Similarity=0.212 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhcCcEEeEEEEeecCCcH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 038305 193 IVEAINVAARDWGLQCLRYEIRDISPPR-GVRAAMEMQAEAERKKRAQILESEGERQAHINIADGKKTSVILESEAAKMD 271 (414)
Q Consensus 193 i~~~l~~~l~~~GI~I~~V~I~di~~p~-~i~~ai~~~~~Aeq~~~a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~ 271 (414)
+.+.+.+.+.. -+.=..+.|.++.+-+ .+-+.+.+.+. ....|+.++.+...+|+++++..++.|+|+++.
T Consensus 121 i~~~i~~~l~~-~l~~~Gi~i~~v~i~~i~~p~~i~~ai~-------~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~ 192 (242)
T cd03405 121 LMEEIRRAVAE-EAKELGIEVVDVRIKRIDLPEEVSESVY-------RRMRAERERIAAEFRAEGEEEAERIRADADRER 192 (242)
T ss_pred HHHHHHHHHHH-HHHccCcEEEEEEEEeccCCHHHHHHHH-------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 44444444433 1222356666666532 22333322222 234455566677788888888888999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHH
Q 038305 272 QVNRAQGEAEAIIAKAQATAKGLA 295 (414)
Q Consensus 272 ~~~~AegeA~a~~~~a~AeA~a~~ 295 (414)
.+..|+|+|++..++|+++|++++
T Consensus 193 ~~~~Aea~a~a~~~~a~gea~a~~ 216 (242)
T cd03405 193 TVILAEAYREAQEIRGEGDAEAAR 216 (242)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999999999988843
No 30
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=97.50 E-value=0.00064 Score=65.52 Aligned_cols=54 Identities=24% Similarity=0.206 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 038305 240 ILESEGERQAHINIADGKKTSVILESEAAKMDQVNRAQGEAEAIIAKAQATAKG 293 (414)
Q Consensus 240 i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~~~~~AegeA~a~~~~a~AeA~a 293 (414)
...|+.++++.+.+|++++...+..|++++++.+.+|+|+|++..+.|+++++.
T Consensus 152 ~~~A~~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~ 205 (262)
T cd03407 152 INAAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRES 205 (262)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 445556666666666666665666666666666666666665555555555443
No 31
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=97.41 E-value=0.001 Score=64.13 Aligned_cols=84 Identities=17% Similarity=0.208 Sum_probs=55.0
Q ss_pred EEEEeecCCcH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 038305 210 RYEIRDISPPR-GVRAAMEMQAEAERKKRAQILESEGERQAHINIADGKKTSVILESEAAKMDQVNRAQGEAEAIIAKAQ 288 (414)
Q Consensus 210 ~V~I~di~~p~-~i~~ai~~~~~Aeq~~~a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~~~~~AegeA~a~~~~a~ 288 (414)
.+.|.++.+-+ ..-+.+.+.+. ....|+.++++.+.+|+++++..+.+|++++++.+..|+|++++..+.|+
T Consensus 161 Gi~v~~v~i~~i~~p~~i~~a~~-------~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae 233 (266)
T cd03404 161 GIEIVGVNLQDADPPEEVQDAFD-------DVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQ 233 (266)
T ss_pred CeEEEEEEEEeCCCCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHH
Confidence 57777776532 23333333322 23445556666777777777777788888888888888888888777777
Q ss_pred HHHHHHHHHHHH
Q 038305 289 ATAKGLAMVSQA 300 (414)
Q Consensus 289 AeA~a~~~~~ea 300 (414)
|++++++.+.++
T Consensus 234 ~~a~~~~~~~~a 245 (266)
T cd03404 234 GEAARFESLLAE 245 (266)
T ss_pred HHHHHHHHHHHH
Confidence 777776665444
No 32
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=97.40 E-value=0.0011 Score=63.80 Aligned_cols=59 Identities=15% Similarity=0.200 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 038305 242 ESEGERQAHINIADGKKTSVILESEAAKMDQVNRAQGEAEAIIAKAQATAKGLAMVSQA 300 (414)
Q Consensus 242 eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~~~~~AegeA~a~~~~a~AeA~a~~~~~ea 300 (414)
.|+.++++.+.+|+++++..+.+|++++++.+..|+|++++..++|+|+|++...+.++
T Consensus 160 ~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~a 218 (261)
T TIGR01933 160 IAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAE 218 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 35566677788888888888888888888888899999988888888888887665443
No 33
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=97.29 E-value=0.0057 Score=58.00 Aligned_cols=174 Identities=14% Similarity=0.215 Sum_probs=108.6
Q ss_pred ccceEeeeCCCceeecCCCceEEEEEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHhccchhhhHhhHHHHHHHH
Q 038305 114 SLKEEAIPIPDQSAITKDNVSILIDGVLYVKIVDPKLASYGVENPIYAVIQLAQTTMRSELGKITLDKTFEERDTLNEKI 193 (414)
Q Consensus 114 ~~r~q~~~~~~~~v~TkD~~~v~vd~~v~yrI~dp~~~~~~~~~~~~~i~~~~~~~lR~vi~~~tl~ei~~~R~~l~~~i 193 (414)
++....++.|......+||+.+.+...|..|- .-..+.+-...+..+-+.-++.+..+=++-+..+++++-+.+++.+
T Consensus 121 SVnPkVI~~P~i~aVAkdGIql~~kArVTVRa--Ni~rLVGGAgEeTIiARVGEgIVttiGSa~~hk~VLEnPd~ISk~V 198 (316)
T PF12127_consen 121 SVNPKVIDTPTIAAVAKDGIQLKVKARVTVRA--NIDRLVGGAGEETIIARVGEGIVTTIGSAESHKEVLENPDSISKTV 198 (316)
T ss_pred ccCCeeecCcchhhhhcCCeEEEEEEEEEEEe--cHHHhccCCCcHHHHHHHccceeeeeccchhHHHHhcCHHHHHHHH
Confidence 45566777777778899999999888777763 2234556667778888888888877777888889999989888877
Q ss_pred HHHHHHHHh-hcCcEEeEEEEeecCCcHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 038305 194 VEAINVAAR-DWGLQCLRYEIRDISPPRGVRAAMEMQAEAER-KKRAQILESEGERQAHINIADGKKTSVILESEAAKMD 271 (414)
Q Consensus 194 ~~~l~~~l~-~~GI~I~~V~I~di~~p~~i~~ai~~~~~Aeq-~~~a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~ 271 (414)
.+. -|+ .--++|.++.|-|++..+.+- .+.++.| +++..+.+|++|.+ .|.|-+.+
T Consensus 199 L~k---gLDagTAFeIlSIDIaDidVG~NIG----A~Lq~dQAeADk~iAqAkAEeR---------------RA~AvA~E 256 (316)
T PF12127_consen 199 LEK---GLDAGTAFEILSIDIADIDVGENIG----AKLQTDQAEADKRIAQAKAEER---------------RAMAVARE 256 (316)
T ss_pred Hhh---CCCcCceeEEEEeeeeccccchhhc----hhhhHHHHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 653 232 346899999999998765544 3333322 22223333332222 12233333
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHH
Q 038305 272 QVNRAQGEAEAIIAKAQATAKGLAMVSQALKENGGLEAASLR 313 (414)
Q Consensus 272 ~~~~AegeA~a~~~~a~AeA~a~~~~~eal~~~~~~~a~~~~ 313 (414)
+..+|+.+.-+ ...-+||++-+..++++++. |+...++|+
T Consensus 257 QEm~A~vqe~r-AkvVeAeaevP~A~aeAfr~-G~lGvmDYy 296 (316)
T PF12127_consen 257 QEMKAKVQEMR-AKVVEAEAEVPLAMAEAFRS-GNLGVMDYY 296 (316)
T ss_pred HHHHHHHHHHH-hHheehhhhchHHHHHHHHc-CCCcchhhh
Confidence 33333332211 12235677788888888885 444444543
No 34
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=97.29 E-value=0.0015 Score=64.92 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 038305 239 QILESEGERQAHINIADGKKTSVILESEAAKMDQVNRAQGEAEAIIAKAQATAKGLAMVSQA 300 (414)
Q Consensus 239 ~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~~~~~AegeA~a~~~~a~AeA~a~~~~~ea 300 (414)
...+||.++.+...+||++++..+..++|+++..+..|+|++++..++|+++|+++++++++
T Consensus 225 ~~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a 286 (334)
T PRK11029 225 NRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADA 286 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34456777888889999999999999999999999999999999999999999998776443
No 35
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=97.23 E-value=0.0021 Score=60.53 Aligned_cols=93 Identities=17% Similarity=0.174 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHH
Q 038305 234 RKKRAQILESEGERQAHINIADGKKTSVILESEAAKMDQVNRAQGEAEAIIAKAQATAKGLAMVSQALKENGGLEAASLR 313 (414)
Q Consensus 234 q~~~a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~~~~~AegeA~a~~~~a~AeA~a~~~~~eal~~~~~~~a~~~~ 313 (414)
+++-.++++||..+.+.+.++|++++..+..||++++..+...+|.+......+.++|+++-..+++..+.-...+..+.
T Consensus 160 ~~AM~~q~~AeR~krAailesEger~~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a~a~~~a~~~~~l~ 239 (301)
T KOG2620|consen 160 KRAMNMQNEAERMKRAAILESEGERIAQINRAEGEKESKILASEGIARQRQNIADGEAEAILAFADAVAGTSAKLVMDLK 239 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhhcchhhhHHhhhHHHHHHHHHHHhhHHHHHHHHhhcccchHHHHHHHHH
Confidence 44555678888888999999999999999999999999999999999999999999999988887776643333333333
Q ss_pred ---HH--HHHHHHHHHhh
Q 038305 314 ---VA--EQYIQAFGNIA 326 (414)
Q Consensus 314 ---~~--~~~~e~l~~ia 326 (414)
.. -+|..+++++.
T Consensus 240 ~~~g~~aasl~~a~qyIg 257 (301)
T KOG2620|consen 240 QEGGVEAASLFDAEQYIG 257 (301)
T ss_pred HhcchhhHHHHHHHHHHH
Confidence 11 44455555443
No 36
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=97.18 E-value=0.0024 Score=63.31 Aligned_cols=58 Identities=17% Similarity=0.148 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 038305 240 ILESEGERQAHINIADGKKTSVILESEAAKMDQVNRAQGEAEAIIAKAQATAKGLAMV 297 (414)
Q Consensus 240 i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~~~~~AegeA~a~~~~a~AeA~a~~~~ 297 (414)
..+||.++.+...++++++....+.++|++++.+..|+|++++..++|+++|++.+++
T Consensus 216 ~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~~~~aeA~a~a~~~~Aegea~a~~~~ 273 (317)
T TIGR01932 216 RMRSEREQIARMHRSQGEEKAEEILGKAEYEVRKILSEAYRTARIIKGEGDAEAAKIY 273 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3445666666777788888888888888888888888888888888888888876654
No 37
>PRK13665 hypothetical protein; Provisional
Probab=96.76 E-value=0.015 Score=54.93 Aligned_cols=174 Identities=14% Similarity=0.217 Sum_probs=101.5
Q ss_pred ccceEeeeCCCceeecCCCceEEEEEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHhccchhhhHhhHHHHHHHH
Q 038305 114 SLKEEAIPIPDQSAITKDNVSILIDGVLYVKIVDPKLASYGVENPIYAVIQLAQTTMRSELGKITLDKTFEERDTLNEKI 193 (414)
Q Consensus 114 ~~r~q~~~~~~~~v~TkD~~~v~vd~~v~yrI~dp~~~~~~~~~~~~~i~~~~~~~lR~vi~~~tl~ei~~~R~~l~~~i 193 (414)
++....++.|......+||+.+.+...|..|- .-..+.+-...+..+-+.-++.+..+=+.-+..+++++-+.+++.+
T Consensus 126 SVnPkVI~~P~i~aVAkdGIql~~kARVTVRa--Ni~rLVGGAgEeTIiARVGEgIVttIGSa~~hk~VLEnPd~ISk~V 203 (316)
T PRK13665 126 SVNPKVIETPFIAAVAKDGIEVKAKARVTVRA--NIDRLVGGAGEETIIARVGEGIVSTIGSSESHKEVLENPDSISKTV 203 (316)
T ss_pred ccCCeeecCCcchhhcccCeEEEEEEEEEeeh--hHHHHhCCCcceeeEeeecCceeecccCcchHHHHhcCHHHHHHHH
Confidence 55667777887788899999999988777662 1122333334444444455555555556667788888888888765
Q ss_pred HHHHHHHHh-hcCcEEeEEEEeecCCcHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 038305 194 VEAINVAAR-DWGLQCLRYEIRDISPPRGVRAAMEMQAEAER-KKRAQILESEGERQAHINIADGKKTSVILESEAAKMD 271 (414)
Q Consensus 194 ~~~l~~~l~-~~GI~I~~V~I~di~~p~~i~~ai~~~~~Aeq-~~~a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~ 271 (414)
.+ +-|+ .--++|.++.|-|++..+.+-..+ ++.| +++..+.+|++|.+ .|.|-+.+
T Consensus 204 L~---kGLDagTAFeIlSIDIADvdVG~NIGA~L----q~dQAEADk~iAqAkAEeR---------------RAmAvA~E 261 (316)
T PRK13665 204 LS---KGLDAGTAFEILSIDIADVDVGKNIGAKL----QTDQAEADKRIAQAKAEER---------------RAMAVALE 261 (316)
T ss_pred Hh---ccCCcCceeEEEEEeeeccccchhhchhh----hHHHHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 44 3333 346899999999998776554433 3222 22223333332221 12333333
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHH
Q 038305 272 QVNRAQGEAEAIIAKAQATAKGLAMVSQALKENGGLEAASLR 313 (414)
Q Consensus 272 ~~~~AegeA~a~~~~a~AeA~a~~~~~eal~~~~~~~a~~~~ 313 (414)
+..+|+.+.-+ ...-+||++-+..+++++++ |+....+|+
T Consensus 262 QEmkA~v~emr-AkvVeAeaeVP~Ama~A~r~-G~lGvmDYy 301 (316)
T PRK13665 262 QEMKAKVQEMR-AKVVEAEAEVPLAMAEALRS-GNLGVMDYY 301 (316)
T ss_pred HHHHHHHHHHH-HHhhhhhhhchHHHHHHHHc-CCCchhhhh
Confidence 33333332211 12346677888889999885 444444443
No 38
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=96.01 E-value=0.052 Score=55.77 Aligned_cols=133 Identities=13% Similarity=0.128 Sum_probs=58.6
Q ss_pred cccccCCHHHHHHHH--HHHHHHHHHhccchhhhHh--hHHHHH----HHHHHHHHHHHhhcCcEE--eEEEEeecCCcH
Q 038305 151 ASYGVENPIYAVIQL--AQTTMRSELGKITLDKTFE--ERDTLN----EKIVEAINVAARDWGLQC--LRYEIRDISPPR 220 (414)
Q Consensus 151 ~~~~~~~~~~~i~~~--~~~~lR~vi~~~tl~ei~~--~R~~l~----~~i~~~l~~~l~~~GI~I--~~V~I~di~~p~ 220 (414)
..|.+.|+...+..+ .+..|+.++ .-.+.+++. .-+++- ..|...+.+.+... +.= ..|.|.++.+-+
T Consensus 163 VqYrI~Dp~~~lf~v~~~~~~L~~~~-~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~-l~~y~~GI~V~~V~I~d 240 (419)
T PRK10930 163 VQYRVTDPEKYLFSVTSPDDSLRQAT-DSALRGVIGKYTMDRILTEGRTVIRSDTQRELEET-IRPYDMGITLLDVNFQA 240 (419)
T ss_pred EEEEECCHHHHHHhccCHHHHHHHHH-HHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHH-HhhcCCCeEEEEEEEee
Confidence 468888888776654 234444433 223334431 122221 23444555555441 111 246677775422
Q ss_pred H-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 038305 221 G-VRAAMEMQAEAERKKRAQILESEGERQAHINIADGKKTSVILESEAAKMDQVNRAQGEAEAIIAKAQATAK 292 (414)
Q Consensus 221 ~-i~~ai~~~~~Aeq~~~a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~~~~~AegeA~a~~~~a~AeA~ 292 (414)
- .=+ +...| -.....|+.++++.+.+|++.+...+.+|++++++.+..|+|.+++..++|+++|+
T Consensus 241 i~pP~---eV~~A----f~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~ 306 (419)
T PRK10930 241 ARPPE---EVKAA----FDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVA 306 (419)
T ss_pred cCCCH---HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 1 111 11112 11222333334444445554444444444444444444444444444444444443
No 39
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=94.74 E-value=0.19 Score=41.89 Aligned_cols=92 Identities=10% Similarity=0.174 Sum_probs=66.4
Q ss_pred eecCCCceEEEEEEEEEEecC----cc--ccccccCCHHHHHHHHHHHHHHHHHhccchhhhHhhHHHH-HHHHHH----
Q 038305 127 AITKDNVSILIDGVLYVKIVD----PK--LASYGVENPIYAVIQLAQTTMRSELGKITLDKTFEERDTL-NEKIVE---- 195 (414)
Q Consensus 127 v~TkD~~~v~vd~~v~yrI~d----p~--~~~~~~~~~~~~i~~~~~~~lR~vi~~~tl~ei~~~R~~l-~~~i~~---- 195 (414)
+-|+|...+.+..+++|...- +. ...|++.|+-.-.-..+.+.+|..+++.+.++...+-..+ .+.+.-
T Consensus 11 VET~DhArL~L~LsYnw~F~v~~~~~~~~~k~F~VpDFVGd~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~~ 90 (118)
T PF11978_consen 11 VETADHARLQLQLSYNWHFDVDRKDPEDAAKLFSVPDFVGDACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDEN 90 (118)
T ss_dssp EE-TT-EEEEEEEEEEEEE--TTTHHHHHHHTTSSTTHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS---
T ss_pred EeecccceeeEEEEEEEEEecCCCChhHHHHhcCCcchHHHHHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCCC
Confidence 569999999999999998653 22 4689999999999999999999999999999999554333 332221
Q ss_pred -HHHHH--HhhcCcEEeEEEEeecCC
Q 038305 196 -AINVA--ARDWGLQCLRYEIRDISP 218 (414)
Q Consensus 196 -~l~~~--l~~~GI~I~~V~I~di~~ 218 (414)
.++.. +...|+.|.+|.|+++.|
T Consensus 91 ~~~r~~~~F~~N~LvIt~vDvqsvEp 116 (118)
T PF11978_consen 91 GEVRDGLRFPANNLVITSVDVQSVEP 116 (118)
T ss_dssp E--SS-EEETTTTEEEEEEEEEEEEE
T ss_pred CCccceeEEcCCCeEEEEEeeeEecc
Confidence 11111 235699999999999864
No 40
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=94.28 E-value=0.22 Score=46.10 Aligned_cols=58 Identities=26% Similarity=0.373 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHhhhcCCE-EEeC
Q 038305 264 ESEAAKMDQVNRAQGEAEAIIAKAQATAKGLAMVSQALKENGGLEAASLRVAEQYIQAFGNIAKEGNT-LLLP 335 (414)
Q Consensus 264 ~AeA~ae~~~~~AegeA~a~~~~a~AeA~a~~~~~eal~~~~~~~a~~~~~~~~~~e~l~~ia~~~~~-vvl~ 335 (414)
.|+.++++.+.+|+|++++..++++|+++... ++ ..+..+++++++.++++.++ ++++
T Consensus 155 ~A~~~~~a~i~~A~ge~~a~~~~aea~~~~~~----------~~----~~~~~~~~e~~~~~~~~~~~~~~~~ 213 (215)
T cd03403 155 EAEREKRAKIIEAEGERQAAILLAEAAKQAAI----------NP----AALQLRELETLEEIAKEAASTVVFP 213 (215)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcc----------CH----HHHHHHHHHHHHHHHhccCCeEEee
Confidence 34555566667777777777666666665421 12 33456789999999977664 4444
No 41
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=93.60 E-value=1.3 Score=36.54 Aligned_cols=47 Identities=21% Similarity=0.200 Sum_probs=37.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 038305 224 AAMEMQAEAERKKRAQILESEGERQAHINIADGKKTSVILESEAAKM 270 (414)
Q Consensus 224 ~ai~~~~~Aeq~~~a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae 270 (414)
+.+..-..|+...+..|.+|+.+++..+..|+.++...+..|+.++.
T Consensus 7 Evl~eIk~aE~~ad~~IeeAkEe~~~~i~eAr~eareiieeaE~eA~ 53 (108)
T COG2811 7 EVLREIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAE 53 (108)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667888888899999999999999999988888877776644
No 42
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=89.60 E-value=3.2 Score=38.23 Aligned_cols=40 Identities=28% Similarity=0.296 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 038305 232 AERKKRAQILESEGERQAHINIADGKKTSVILESEAAKMD 271 (414)
Q Consensus 232 Aeq~~~a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~ 271 (414)
|++++...+.+|+.+++..+.+|+.+++..+..|+.+++.
T Consensus 20 A~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~~ 59 (198)
T PRK01558 20 AERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEAND 59 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555666666666666666665555555544443
No 43
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=89.28 E-value=18 Score=33.32 Aligned_cols=50 Identities=20% Similarity=0.158 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 038305 238 AQILESEGERQAHINIADGKKTSVILESEAAKMDQVNRAQGEAEAIIAKA 287 (414)
Q Consensus 238 a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~~~~~AegeA~a~~~~a 287 (414)
.-..+|+.+++..+.+|+.+++..+.+|+++++..+.+|+.+|+....+.
T Consensus 15 ~~~eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~~~~~~~ 64 (198)
T PRK01558 15 DGLEEAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEANDYKRHA 64 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777788888888888888888888877777777776544333
No 44
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=89.23 E-value=19 Score=34.27 Aligned_cols=14 Identities=14% Similarity=0.401 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHH
Q 038305 311 SLRVAEQYIQAFGN 324 (414)
Q Consensus 311 ~~~~~~~~~e~l~~ 324 (414)
+-.+...+++-+..
T Consensus 146 ~~~lid~~i~~l~~ 159 (246)
T TIGR03321 146 EERMVDVFVQRLRT 159 (246)
T ss_pred HHHHHHHHHHHhhc
Confidence 44566666665543
No 45
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=89.18 E-value=1.1 Score=43.50 Aligned_cols=47 Identities=38% Similarity=0.490 Sum_probs=33.6
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 038305 253 IADGKKTSVILESEAAKMDQVNRAQGEAEAIIAKAQATAKGLAMVSQA 300 (414)
Q Consensus 253 ~Ae~~a~~~~~~AeA~ae~~~~~AegeA~a~~~~a~AeA~a~~~~~ea 300 (414)
.|+.++...+.+|++++++.+.+|+|++++..+.++|++++ +.++++
T Consensus 184 ~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a-~~~~~a 230 (291)
T COG0330 184 AAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARA 230 (291)
T ss_pred HHHHHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHH-HHHHhh
Confidence 34444445677788888888888888888888888888888 444444
No 46
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=89.11 E-value=3 Score=38.79 Aligned_cols=48 Identities=15% Similarity=0.210 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhh
Q 038305 231 EAERKKRAQILESEGERQAHINIADGKKTSVILESEAAKMDQVNRAQG 278 (414)
Q Consensus 231 ~Aeq~~~a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~~~~~Aeg 278 (414)
.|+++++..+.+|+.+++..+.+|+.+++..+..|+.+.+....+++.
T Consensus 24 eA~~eA~~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s 71 (207)
T PRK01005 24 PAEEEAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQGES 71 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666666666666666666655555544444443
No 47
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=89.02 E-value=8 Score=34.08 Aligned_cols=18 Identities=17% Similarity=0.394 Sum_probs=7.6
Q ss_pred HHHHHHhhHHHHHHHHHH
Q 038305 271 DQVNRAQGEAEAIIAKAQ 288 (414)
Q Consensus 271 ~~~~~AegeA~a~~~~a~ 288 (414)
..+..|+.|+++....++
T Consensus 107 ~~~~~A~~ea~~~~~~a~ 124 (156)
T CHL00118 107 NELKQAQKYIDSLLNEAT 124 (156)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 48
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=88.29 E-value=10 Score=35.21 Aligned_cols=14 Identities=36% Similarity=0.399 Sum_probs=5.3
Q ss_pred HHHhhHHHHHHHHH
Q 038305 274 NRAQGEAEAIIAKA 287 (414)
Q Consensus 274 ~~AegeA~a~~~~a 287 (414)
..|+.+++++...+
T Consensus 136 ~~A~~eae~ii~~A 149 (205)
T PRK06231 136 KEANRQANLIIFQA 149 (205)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 49
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=88.20 E-value=18 Score=33.64 Aligned_cols=53 Identities=15% Similarity=0.230 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 038305 237 RAQILESEGERQAHINIADGKKTSVILESEAAKMDQVNRAQGEAEAIIAKAQA 289 (414)
Q Consensus 237 ~a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~~~~~AegeA~a~~~~a~A 289 (414)
...+.+|+.+++..+..|+.+++..+.+|+.+++..+..|+.+++....++..
T Consensus 19 ~eiL~eA~~eA~~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s 71 (207)
T PRK01005 19 EETLKPAEEEAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQGES 71 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677778888888888888888888888888888887777766554444
No 50
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=88.04 E-value=12 Score=33.44 Aligned_cols=8 Identities=13% Similarity=0.256 Sum_probs=3.6
Q ss_pred hhhhHhhH
Q 038305 179 LDKTFEER 186 (414)
Q Consensus 179 l~ei~~~R 186 (414)
+..++..|
T Consensus 35 i~~~le~R 42 (167)
T PRK14475 35 LAGALDAY 42 (167)
T ss_pred HHHHHHHH
Confidence 44455443
No 51
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=87.77 E-value=10 Score=34.05 Aligned_cols=10 Identities=20% Similarity=0.601 Sum_probs=5.0
Q ss_pred chhhhHhhHH
Q 038305 178 TLDKTFEERD 187 (414)
Q Consensus 178 tl~ei~~~R~ 187 (414)
++.+++..|.
T Consensus 42 pi~~~l~~R~ 51 (173)
T PRK13453 42 PLKDVMDKRE 51 (173)
T ss_pred HHHHHHHHHH
Confidence 4555554443
No 52
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=87.71 E-value=26 Score=33.45 Aligned_cols=15 Identities=7% Similarity=0.226 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHH
Q 038305 310 ASLRVAEQYIQAFGN 324 (414)
Q Consensus 310 ~~~~~~~~~~e~l~~ 324 (414)
.+..+...+++.+..
T Consensus 145 ~~~~lid~~i~~l~~ 159 (250)
T PRK14474 145 LEQQIVGIFIARLEH 159 (250)
T ss_pred HHHHHHHHHHHHhcc
Confidence 344566666655543
No 53
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=87.61 E-value=11 Score=30.97 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=18.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038305 225 AMEMQAEAERKKRAQILESEGERQAHINIADGKK 258 (414)
Q Consensus 225 ai~~~~~Aeq~~~a~i~eAe~e~~~~i~~Ae~~a 258 (414)
.|.....++.+.+..+..|+.++...+..|..++
T Consensus 4 ~i~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A 37 (103)
T PRK08404 4 VIKEIVKAEKEAEERIEKAKEEAKKIIRKAKEEA 37 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666666666666555555555443
No 54
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=87.38 E-value=14 Score=30.97 Aligned_cols=50 Identities=8% Similarity=0.201 Sum_probs=32.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 038305 225 AMEMQAEAERKKRAQILESEGERQAHINIADGKKTSVILESEAAKMDQVN 274 (414)
Q Consensus 225 ai~~~~~Aeq~~~a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~~~~ 274 (414)
.|..-+.||+++...+.+|+.++...+.+|..+|+..+..-.+.+++...
T Consensus 7 GIQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~yr~~kE~ef~ 56 (113)
T TIGR01147 7 GIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFK 56 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777777777777777777777666666655555444333
No 55
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.30 E-value=8.1 Score=35.95 Aligned_cols=94 Identities=11% Similarity=0.177 Sum_probs=55.0
Q ss_pred ecCCCceEEEEEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHhccchhhhHhhHHHHHHHHHHHHHHHHh-hcCc
Q 038305 128 ITKDNVSILIDGVLYVKIVDPKLASYGVENPIYAVIQLAQTTMRSELGKITLDKTFEERDTLNEKIVEAINVAAR-DWGL 206 (414)
Q Consensus 128 ~TkD~~~v~vd~~v~yrI~dp~~~~~~~~~~~~~i~~~~~~~lR~vi~~~tl~ei~~~R~~l~~~i~~~l~~~l~-~~GI 206 (414)
..-||+.|.....+..|- .-..+.+-...+..+-+.-++.+-.+=++....+++++-+.+++.+... -|. ...+
T Consensus 139 vam~gievkakaritvra--ni~rlvggageetviarvgegivstigss~~h~~vlenpd~isktvl~k---gld~gtaf 213 (328)
T COG4864 139 VAMNGIEVKAKARITVRA--NIERLVGGAGEETVIARVGEGIVSTIGSSDEHTKVLENPDSISKTVLEK---GLDSGTAF 213 (328)
T ss_pred eeccceEEEEEEEEEehh--hHHHHhCCCCchhhhhhhccceeeccCCCcchhhHhcCccHHHHHHHHc---cCCCCcee
Confidence 455676666654444331 1123444444555555555555444444556677888888888766542 222 3357
Q ss_pred EEeEEEEeecCCcHHHHHHH
Q 038305 207 QCLRYEIRDISPPRGVRAAM 226 (414)
Q Consensus 207 ~I~~V~I~di~~p~~i~~ai 226 (414)
+|.++.|-|+++...+-.-+
T Consensus 214 eilsidiadvdigkniga~l 233 (328)
T COG4864 214 EILSIDIADVDIGKNIGAKL 233 (328)
T ss_pred EEEEeeeecccccccccccc
Confidence 89999999998776654444
No 56
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=87.21 E-value=14 Score=33.21 Aligned_cols=11 Identities=27% Similarity=0.495 Sum_probs=5.7
Q ss_pred chhhhHhhHHH
Q 038305 178 TLDKTFEERDT 188 (414)
Q Consensus 178 tl~ei~~~R~~ 188 (414)
++..++.+|.+
T Consensus 42 pi~~~l~~R~~ 52 (175)
T PRK14472 42 PILSALEEREK 52 (175)
T ss_pred HHHHHHHHHHH
Confidence 45556655443
No 57
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=86.97 E-value=12 Score=33.53 Aligned_cols=11 Identities=27% Similarity=0.510 Sum_probs=6.1
Q ss_pred chhhhHhhHHH
Q 038305 178 TLDKTFEERDT 188 (414)
Q Consensus 178 tl~ei~~~R~~ 188 (414)
++..++..|..
T Consensus 40 pi~~~l~~R~~ 50 (173)
T PRK13460 40 VILKALDERAS 50 (173)
T ss_pred HHHHHHHHHHH
Confidence 46666655543
No 58
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=86.95 E-value=14 Score=29.44 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhccchhhhH--hhHHHHHHHHHHHHHHHHhhcCcEEeEEEEeec
Q 038305 164 QLAQTTMRSELGKITLDKTF--EERDTLNEKIVEAINVAARDWGLQCLRYEIRDI 216 (414)
Q Consensus 164 ~~~~~~lR~vi~~~tl~ei~--~~R~~l~~~i~~~l~~~l~~~GI~I~~V~I~di 216 (414)
..+++.+..+++.++.+++. ..++.+.+++++.++..+.+ -.|.+|.++++
T Consensus 44 ~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~--~~V~~V~ft~f 96 (99)
T PF03748_consen 44 PRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGK--GKVKDVYFTDF 96 (99)
T ss_pred HHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhcc--CcEEEEEEEEE
Confidence 56889999999999999998 78999999999999998854 23778887765
No 59
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=86.95 E-value=13 Score=32.77 Aligned_cols=10 Identities=10% Similarity=0.418 Sum_probs=4.9
Q ss_pred chhhhHhhHH
Q 038305 178 TLDKTFEERD 187 (414)
Q Consensus 178 tl~ei~~~R~ 187 (414)
++..++.+|.
T Consensus 29 pi~~~l~~R~ 38 (159)
T PRK13461 29 KIKAVIDSRQ 38 (159)
T ss_pred HHHHHHHHHH
Confidence 4555554443
No 60
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=86.67 E-value=16 Score=33.83 Aligned_cols=11 Identities=18% Similarity=0.302 Sum_probs=6.0
Q ss_pred chhhhHhhHHH
Q 038305 178 TLDKTFEERDT 188 (414)
Q Consensus 178 tl~ei~~~R~~ 188 (414)
.+..++.+|.+
T Consensus 77 pI~~vLe~R~~ 87 (204)
T PRK09174 77 RIGGIIETRRD 87 (204)
T ss_pred HHHHHHHHHHH
Confidence 45566655543
No 61
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=86.32 E-value=7.4 Score=31.95 Aligned_cols=56 Identities=20% Similarity=0.344 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHH
Q 038305 237 RAQILESEGERQAHINIADGKKTSVILESEAAKM----DQVNRAQGEAEAIIAKAQATAK 292 (414)
Q Consensus 237 ~a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae----~~~~~AegeA~a~~~~a~AeA~ 292 (414)
...|.++|.+.+..+..|+.+++..+..|...++ ..+..|+.+|+.++..|+.+++
T Consensus 5 i~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie 64 (103)
T PRK08404 5 IKEIVKAEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGE 64 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777766655543 3355555555555555444443
No 62
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=86.31 E-value=12 Score=33.10 Aligned_cols=14 Identities=14% Similarity=0.475 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHH
Q 038305 310 ASLRVAEQYIQAFG 323 (414)
Q Consensus 310 ~~~~~~~~~~e~l~ 323 (414)
+...++.+|.+..+
T Consensus 127 Lav~iAsk~~~~~~ 140 (154)
T PRK06568 127 EVIKLVSEYFQSVK 140 (154)
T ss_pred HHHHHHHHHHHHhc
Confidence 34556667766554
No 63
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=86.09 E-value=14 Score=32.06 Aligned_cols=11 Identities=27% Similarity=0.419 Sum_probs=5.7
Q ss_pred chhhhHhhHHH
Q 038305 178 TLDKTFEERDT 188 (414)
Q Consensus 178 tl~ei~~~R~~ 188 (414)
++..++.+|.+
T Consensus 31 Pi~~~l~~R~~ 41 (141)
T PRK08476 31 PLLKFMDNRNA 41 (141)
T ss_pred HHHHHHHHHHH
Confidence 44555555544
No 64
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=85.95 E-value=13 Score=33.23 Aligned_cols=10 Identities=20% Similarity=0.355 Sum_probs=4.8
Q ss_pred chhhhHhhHH
Q 038305 178 TLDKTFEERD 187 (414)
Q Consensus 178 tl~ei~~~R~ 187 (414)
++.+++.+|.
T Consensus 46 Pi~~~l~~R~ 55 (167)
T PRK08475 46 PLKNFYKSRI 55 (167)
T ss_pred HHHHHHHHHH
Confidence 4455554443
No 65
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=85.13 E-value=19 Score=30.77 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Q 038305 265 SEAAKMDQVNRAQGEAEAIIAKAQAT 290 (414)
Q Consensus 265 AeA~ae~~~~~AegeA~a~~~~a~Ae 290 (414)
|+..++..+..|+.+++.+...++++
T Consensus 84 a~~~~~~~~~~a~~ea~~~~~~a~~~ 109 (140)
T PRK07353 84 ADKLAAEALAEAQAEAQASKEKARRE 109 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555554444433
No 66
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=84.96 E-value=18 Score=32.00 Aligned_cols=10 Identities=20% Similarity=0.288 Sum_probs=4.9
Q ss_pred chhhhHhhHH
Q 038305 178 TLDKTFEERD 187 (414)
Q Consensus 178 tl~ei~~~R~ 187 (414)
++..++..|.
T Consensus 32 pi~~~l~~R~ 41 (164)
T PRK14473 32 PVLNLLNERT 41 (164)
T ss_pred HHHHHHHHHH
Confidence 4555554443
No 67
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=84.78 E-value=30 Score=31.28 Aligned_cols=12 Identities=17% Similarity=0.279 Sum_probs=7.2
Q ss_pred cchhhhHhhHHH
Q 038305 177 ITLDKTFEERDT 188 (414)
Q Consensus 177 ~tl~ei~~~R~~ 188 (414)
-++..++.+|..
T Consensus 47 kPI~~~l~~R~~ 58 (184)
T CHL00019 47 GVLSDLLDNRKQ 58 (184)
T ss_pred hHHHHHHHHHHH
Confidence 466777755543
No 68
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=84.63 E-value=21 Score=29.87 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=29.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 038305 249 AHINIADGKKTSVILESEAAKMDQVNRAQGEAEAIIAKAQATAK 292 (414)
Q Consensus 249 ~~i~~Ae~~a~~~~~~AeA~ae~~~~~AegeA~a~~~~a~AeA~ 292 (414)
..+..||.+|+.++..|..++...+.+|+.||+.-+...+++.+
T Consensus 9 Q~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~yr~~kE 52 (113)
T TIGR01147 9 QQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQRE 52 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777777777777777665555444433
No 69
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=84.31 E-value=5.6 Score=39.49 Aligned_cols=80 Identities=21% Similarity=0.185 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHH
Q 038305 243 SEGERQAHINIADGKKTSVILESEAAKMDQVNRAQGEAEAIIAKAQATAKGLAMVSQALKENGGLEAASLRVAEQYIQAF 322 (414)
Q Consensus 243 Ae~e~~~~i~~Ae~~a~~~~~~AeA~ae~~~~~AegeA~a~~~~a~AeA~a~~~~~eal~~~~~~~a~~~~~~~~~~e~l 322 (414)
||+++.....-||++.+..+.+|+|+++..+.+.++||.++.+.++++++..++-++++..++.... +...++++
T Consensus 287 aeAe~~r~~klaEAnk~~~~~qaqAEA~~irk~geAEA~~ieA~akaeaeqm~~ka~v~~~y~~aa~-----l~~lLeal 361 (428)
T KOG2668|consen 287 AEAEVERETKLAEANKELYNKQAQAEAELIRKQGEAEAFAIEADAKAEAEQMAAKAEVYQAYAQAAY-----LRTLLEAL 361 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHH-----HHHHHHHH
Confidence 4555566666677777778888888888888888888888888888888888888888887764433 34578888
Q ss_pred HHhhh
Q 038305 323 GNIAK 327 (414)
Q Consensus 323 ~~ia~ 327 (414)
+.++.
T Consensus 362 p~Ia~ 366 (428)
T KOG2668|consen 362 PMIAA 366 (428)
T ss_pred HHHHH
Confidence 88764
No 70
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=84.29 E-value=20 Score=32.16 Aligned_cols=13 Identities=38% Similarity=0.417 Sum_probs=7.2
Q ss_pred ccchhhhHhhHHH
Q 038305 176 KITLDKTFEERDT 188 (414)
Q Consensus 176 ~~tl~ei~~~R~~ 188 (414)
..++..++.+|.+
T Consensus 41 ~kpI~~~l~~R~~ 53 (174)
T PRK07352 41 RGFLGKILEERRE 53 (174)
T ss_pred HHHHHHHHHHHHH
Confidence 3346666755543
No 71
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=84.25 E-value=3.4 Score=36.74 Aligned_cols=80 Identities=9% Similarity=0.048 Sum_probs=59.9
Q ss_pred CceEEEEEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHhccchhhhH--hhHHHHHHHHHHHHHHHHhhcCcEEe
Q 038305 132 NVSILIDGVLYVKIVDPKLASYGVENPIYAVIQLAQTTMRSELGKITLDKTF--EERDTLNEKIVEAINVAARDWGLQCL 209 (414)
Q Consensus 132 ~~~v~vd~~v~yrI~dp~~~~~~~~~~~~~i~~~~~~~lR~vi~~~tl~ei~--~~R~~l~~~i~~~l~~~l~~~GI~I~ 209 (414)
+....|.+.+.|.+.|.... -.+ ..=.+.+++.+...+++.|.+++. ..+++|..++++.++..|..-+ .|.
T Consensus 76 ~~~~~v~i~i~l~~~n~~~~-~el----~~~~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~-~V~ 149 (159)
T COG1580 76 PKDRYVKIAITLEVANKALL-EEL----EEKKPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ-VVK 149 (159)
T ss_pred CCcEEEEEEEEEeeCCHHHH-HHH----HHhhHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCC-eeE
Confidence 55666777777776553221 000 012356889999999999999998 6799999999999999998855 888
Q ss_pred EEEEeecC
Q 038305 210 RYEIRDIS 217 (414)
Q Consensus 210 ~V~I~di~ 217 (414)
+|.++++.
T Consensus 150 dV~fT~fi 157 (159)
T COG1580 150 DVLFTNFI 157 (159)
T ss_pred EEeeehhh
Confidence 88888764
No 72
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=84.01 E-value=22 Score=31.05 Aligned_cols=17 Identities=35% Similarity=0.376 Sum_probs=6.7
Q ss_pred HHHHHHhhHHHHHHHHH
Q 038305 271 DQVNRAQGEAEAIIAKA 287 (414)
Q Consensus 271 ~~~~~AegeA~a~~~~a 287 (414)
..+..|+.++++....+
T Consensus 89 ~~~~~a~~ea~~~~~~a 105 (156)
T PRK05759 89 EAKAEAEAEAARIKAQA 105 (156)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444433333
No 73
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.60 E-value=21 Score=37.92 Aligned_cols=62 Identities=29% Similarity=0.322 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHhh
Q 038305 263 LESEAAKMDQVNRAQGEAEAIIAKAQATAKGLAMVSQALKENGGLEAASLRVAEQYIQAFGNIA 326 (414)
Q Consensus 263 ~~AeA~ae~~~~~AegeA~a~~~~a~AeA~a~~~~~eal~~~~~~~a~~~~~~~~~~e~l~~ia 326 (414)
..++++++.++.+++++|++++.+++|+|++.+.+++++...+......+ ....+++|+.++
T Consensus 409 e~~~aea~a~~a~~~~~Aea~r~kG~AEAea~r~lAEa~~~~~~a~~a~~--~~~~vq~Lp~~~ 470 (548)
T COG2268 409 EAAKAEAEAQAAEIKAEAEAIREKGKAEAEAKRALAEAIQVLGDAAAAEL--FKALVQALPEVA 470 (548)
T ss_pred HhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHHHH
Confidence 34556777888889999999999999999999999999998876632222 224555555554
No 74
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=83.38 E-value=39 Score=35.22 Aligned_cols=19 Identities=5% Similarity=0.295 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 038305 310 ASLRVAEQYIQAFGNIAKE 328 (414)
Q Consensus 310 ~~~~~~~~~~e~l~~ia~~ 328 (414)
.+-.+.+.+++.+..+..+
T Consensus 142 ~~~~lId~~i~~l~~~~~~ 160 (445)
T PRK13428 142 QQSATVDRFLDELDAMAPS 160 (445)
T ss_pred HHHHHHHHHHHHhhccCCC
Confidence 3456777888777765553
No 75
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=82.94 E-value=23 Score=32.08 Aligned_cols=11 Identities=18% Similarity=0.377 Sum_probs=5.9
Q ss_pred chhhhHhhHHH
Q 038305 178 TLDKTFEERDT 188 (414)
Q Consensus 178 tl~ei~~~R~~ 188 (414)
.+..++.+|..
T Consensus 55 PI~~~l~~R~~ 65 (181)
T PRK13454 55 RIGAVLAERQG 65 (181)
T ss_pred HHHHHHHHHHH
Confidence 45556655544
No 76
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=82.36 E-value=30 Score=31.30 Aligned_cols=10 Identities=10% Similarity=0.381 Sum_probs=5.3
Q ss_pred hhhhHhhHHH
Q 038305 179 LDKTFEERDT 188 (414)
Q Consensus 179 l~ei~~~R~~ 188 (414)
+..++.+|.+
T Consensus 52 v~~~L~~R~~ 61 (184)
T PRK13455 52 IGGMLDKRAE 61 (184)
T ss_pred HHHHHHHHHH
Confidence 4566655543
No 77
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=81.80 E-value=23 Score=27.76 Aligned_cols=27 Identities=33% Similarity=0.339 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038305 232 AERKKRAQILESEGERQAHINIADGKK 258 (414)
Q Consensus 232 Aeq~~~a~i~eAe~e~~~~i~~Ae~~a 258 (414)
++.+.+..+..|+.++...+..|..++
T Consensus 7 ae~~~~~~l~~A~~ea~~Ii~~A~~~A 33 (85)
T TIGR02926 7 AEEDAEELIEEAEEERKQRIAEAREEA 33 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445554444444444433
No 78
>PRK09098 type III secretion system protein HrpB; Validated
Probab=81.13 E-value=25 Score=33.27 Aligned_cols=35 Identities=6% Similarity=0.107 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 038305 236 KRAQILESEGERQAHINIADGKKTSVILESEAAKM 270 (414)
Q Consensus 236 ~~a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae 270 (414)
++..+.+|+.+++..+.+|+.+++..+.+|+.+.+
T Consensus 41 ~~~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e 75 (233)
T PRK09098 41 RDAVLAAARARAERIVAEARAQAEAILEAARREAD 75 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555555554433
No 79
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=81.02 E-value=20 Score=31.06 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhccchhhhH--hhHHHHHHHHHHHHHHHHhhcCcEEeEEEEeec
Q 038305 164 QLAQTTMRSELGKITLDKTF--EERDTLNEKIVEAINVAARDWGLQCLRYEIRDI 216 (414)
Q Consensus 164 ~~~~~~lR~vi~~~tl~ei~--~~R~~l~~~i~~~l~~~l~~~GI~I~~V~I~di 216 (414)
..+++.+-.+++..+.+++. ..++.|.+++++.+|..+.+ | .|.+|.++++
T Consensus 87 p~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~-g-~V~~Vyft~f 139 (142)
T PRK07718 87 FQVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE-G-KVEKVYITSF 139 (142)
T ss_pred hhhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc-C-ceEEEEEEee
Confidence 36788889999999999998 67999999999999988876 5 6888888775
No 80
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=80.90 E-value=39 Score=29.85 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=15.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 038305 247 RQAHINIADGKKTSVILESEAAKMDQVNRA 276 (414)
Q Consensus 247 ~~~~i~~Ae~~a~~~~~~AeA~ae~~~~~A 276 (414)
.+..+.+|+.+++..+.+|+..++.....+
T Consensus 61 ~e~~L~~Ar~EA~~Ii~~A~~~a~~~~~ea 90 (154)
T PRK06568 61 TNAQIKKLETLRSQMIEESNEVTKKIIQEK 90 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544443333
No 81
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=79.97 E-value=10 Score=36.94 Aligned_cols=9 Identities=22% Similarity=0.331 Sum_probs=4.4
Q ss_pred EEEEeecCC
Q 038305 210 RYEIRDISP 218 (414)
Q Consensus 210 ~V~I~di~~ 218 (414)
.+.|.|+.+
T Consensus 144 GI~I~dV~I 152 (280)
T cd03406 144 GLEIQAVRV 152 (280)
T ss_pred CcEEEEEEE
Confidence 445555543
No 82
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=78.12 E-value=8.4 Score=31.48 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=31.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 038305 225 AMEMQAEAERKKRAQILESEGERQAHINIADGKKTSVILESEAAKMD 271 (414)
Q Consensus 225 ai~~~~~Aeq~~~a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~ 271 (414)
.|...+.|+.++...+.+|+.++...+..|+.+++..+.....+++.
T Consensus 5 ~Iq~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e~ 51 (105)
T PF03179_consen 5 GIQQLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEAEE 51 (105)
T ss_dssp -SSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777777777777776666555554443
No 83
>PTZ00491 major vault protein; Provisional
Probab=77.91 E-value=13 Score=41.19 Aligned_cols=63 Identities=19% Similarity=0.179 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHH------------------HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 038305 240 ILESEGERQAHINIADGKK--TSVILESEAAKM------------------DQVNRAQGEAEAIIAKAQATAKGLAMVSQ 299 (414)
Q Consensus 240 i~eAe~e~~~~i~~Ae~~a--~~~~~~AeA~ae------------------~~~~~AegeA~a~~~~a~AeA~a~~~~~e 299 (414)
...|+.+++....+|++.- +++..+|+|++. +.+++|+++|++.++.++|+-+..++-++
T Consensus 665 Ea~A~h~a~~~eQea~g~Lerqk~~d~~~aE~~r~~llel~a~s~aves~g~a~a~a~a~aea~~ie~e~~v~~a~lra~ 744 (850)
T PTZ00491 665 EAAARHQAELLEQEARGRLERQKMHDKAKAEEQRTKLLELQAESAAVESSGQSRAEALAEAEARLIEAEAEVEQAELRAK 744 (850)
T ss_pred HHHHHHHHHHHHHHhhchhHHHhhhhHHHHHHHHHHHHHHHhHHHHHhhcchHHHHHHHHHHHHhhhhhhHHHHHHhhhH
Confidence 3444445555555555543 444455555533 34555666666666666666555555544
Q ss_pred HHH
Q 038305 300 ALK 302 (414)
Q Consensus 300 al~ 302 (414)
|++
T Consensus 745 a~~ 747 (850)
T PTZ00491 745 ALR 747 (850)
T ss_pred HHH
Confidence 443
No 84
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=77.44 E-value=59 Score=30.11 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=9.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH
Q 038305 269 KMDQVNRAQGEAEAIIAKAQAT 290 (414)
Q Consensus 269 ae~~~~~AegeA~a~~~~a~Ae 290 (414)
.+..+..++.++++.+..++.+
T Consensus 136 ~e~~~~~a~~ea~~~l~~Ae~~ 157 (204)
T PRK09174 136 AEAERAAIEASLEKKLKEAEAR 157 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333
No 85
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=77.42 E-value=51 Score=31.32 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 038305 265 SEAAKMDQVNRAQGEAEAIIAKAQATAK 292 (414)
Q Consensus 265 AeA~ae~~~~~AegeA~a~~~~a~AeA~ 292 (414)
|+..++..+..|+.+|++.+..++++.+
T Consensus 84 A~~~~~~i~~~A~~ea~~~~~~a~~~ie 111 (246)
T TIGR03321 84 AQAERQRLLDEAREEADEIREKWQEALR 111 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555444433
No 86
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=76.94 E-value=49 Score=31.61 Aligned_cols=29 Identities=7% Similarity=0.107 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 038305 264 ESEAAKMDQVNRAQGEAEAIIAKAQATAK 292 (414)
Q Consensus 264 ~AeA~ae~~~~~AegeA~a~~~~a~AeA~ 292 (414)
+|+.+++..+..|+.++++.+..++++.+
T Consensus 83 eA~~~~~~il~~A~~ea~~~~~~a~~~ie 111 (250)
T PRK14474 83 AADEQRQHLLNEAREDVATARDEWLEQLE 111 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555566555555544433
No 87
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=76.88 E-value=46 Score=28.38 Aligned_cols=7 Identities=29% Similarity=0.254 Sum_probs=3.1
Q ss_pred HHHHHHh
Q 038305 222 VRAAMEM 228 (414)
Q Consensus 222 i~~ai~~ 228 (414)
+.+.|+.
T Consensus 30 i~~~l~~ 36 (140)
T PRK07353 30 VGKVVEE 36 (140)
T ss_pred HHHHHHH
Confidence 4444443
No 88
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=76.87 E-value=39 Score=30.49 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHhhhh
Q 038305 242 ESEGERQAHINIADGKK 258 (414)
Q Consensus 242 eAe~e~~~~i~~Ae~~a 258 (414)
+|+.+.+..+.+|+.++
T Consensus 24 ea~~~~~~i~~ea~~~a 40 (188)
T PRK02292 24 EADEEAEEIIAEAEADA 40 (188)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 89
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=76.72 E-value=56 Score=29.23 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=9.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH
Q 038305 269 KMDQVNRAQGEAEAIIAKAQAT 290 (414)
Q Consensus 269 ae~~~~~AegeA~a~~~~a~Ae 290 (414)
++..+..|+.+++++...++.+
T Consensus 101 ~~~~~~~A~~ea~~~~~~a~~~ 122 (175)
T PRK14472 101 RAEITEKAHTEAKKMIASAKEE 122 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433
No 90
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=76.52 E-value=33 Score=27.88 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhHH
Q 038305 240 ILESEGERQAHINIADGKKTSVILESEAAKMDQVNRAQGEA 280 (414)
Q Consensus 240 i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~~~~~AegeA 280 (414)
+..||.++...+.+|+.++...+.+|..+++..+...+.+.
T Consensus 9 Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~ 49 (105)
T PF03179_consen 9 LLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEA 49 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666665555555555554444443333
No 91
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=76.37 E-value=54 Score=28.92 Aligned_cols=10 Identities=20% Similarity=0.358 Sum_probs=4.4
Q ss_pred chhhhHhhHH
Q 038305 178 TLDKTFEERD 187 (414)
Q Consensus 178 tl~ei~~~R~ 187 (414)
++..++.+|.
T Consensus 32 pi~~~l~~R~ 41 (164)
T PRK14471 32 PILGAVKERE 41 (164)
T ss_pred HHHHHHHHHH
Confidence 3444554443
No 92
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=76.28 E-value=65 Score=29.79 Aligned_cols=10 Identities=10% Similarity=0.318 Sum_probs=4.8
Q ss_pred chhhhHhhHH
Q 038305 178 TLDKTFEERD 187 (414)
Q Consensus 178 tl~ei~~~R~ 187 (414)
++..++.+|.
T Consensus 72 Pi~~~L~~R~ 81 (205)
T PRK06231 72 PTQRFLNKRK 81 (205)
T ss_pred HHHHHHHHHH
Confidence 3455554443
No 93
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=75.94 E-value=46 Score=27.84 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=5.0
Q ss_pred HHHHHhhhhhhHH
Q 038305 250 HINIADGKKTSVI 262 (414)
Q Consensus 250 ~i~~Ae~~a~~~~ 262 (414)
.+..|+.++...+
T Consensus 59 ~l~~a~~ea~~i~ 71 (132)
T PF00430_consen 59 KLAEAREEAQEII 71 (132)
T ss_dssp HHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444433333
No 94
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=75.67 E-value=37 Score=26.61 Aligned_cols=52 Identities=21% Similarity=0.266 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHH
Q 038305 239 QILESEGERQAHINIADGKKTSVILESEAAKMDQ----VNRAQGEAEAIIAKAQAT 290 (414)
Q Consensus 239 ~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~~----~~~AegeA~a~~~~a~Ae 290 (414)
.+..++.+.+..+..|+.++...+..|...++.. +..|+.++..++..|+.+
T Consensus 3 ~ik~ae~~~~~~l~~A~~ea~~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii~~Ak~e 58 (85)
T TIGR02926 3 EIKKAEEDAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEE 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777788877777777666554433 333444444444444433
No 95
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=75.55 E-value=62 Score=29.19 Aligned_cols=40 Identities=5% Similarity=0.053 Sum_probs=16.7
Q ss_pred HHHHHHhhhhhhHHHHHHHH----HHHHHHHHhhHHHHHHHHHH
Q 038305 249 AHINIADGKKTSVILESEAA----KMDQVNRAQGEAEAIIAKAQ 288 (414)
Q Consensus 249 ~~i~~Ae~~a~~~~~~AeA~----ae~~~~~AegeA~a~~~~a~ 288 (414)
..+..|+.+++..+..|+.+ ++..+..|+.++++....++
T Consensus 86 ~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~A~ 129 (184)
T PRK13455 86 RKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAE 129 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443322 33334444444444433333
No 96
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=74.80 E-value=58 Score=28.54 Aligned_cols=6 Identities=0% Similarity=0.268 Sum_probs=2.5
Q ss_pred HHHHHH
Q 038305 222 VRAAME 227 (414)
Q Consensus 222 i~~ai~ 227 (414)
+...|+
T Consensus 47 i~~~l~ 52 (156)
T CHL00118 47 LLKVLD 52 (156)
T ss_pred HHHHHH
Confidence 444443
No 97
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=74.74 E-value=61 Score=28.76 Aligned_cols=42 Identities=10% Similarity=0.145 Sum_probs=17.7
Q ss_pred HHHHHHHhhhhhhHHHHHHHHH----HHHHHHHhhHHHHHHHHHHH
Q 038305 248 QAHINIADGKKTSVILESEAAK----MDQVNRAQGEAEAIIAKAQA 289 (414)
Q Consensus 248 ~~~i~~Ae~~a~~~~~~AeA~a----e~~~~~AegeA~a~~~~a~A 289 (414)
+..+..|+.+++..+..|..++ +..+..|+.|+++.+..|+.
T Consensus 68 e~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~A~~ 113 (167)
T PRK14475 68 KAEREEAERQAAAMLAAAKADARRMEAEAKEKLEEQIKRRAEMAER 113 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433332 23333344444444444443
No 98
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=74.01 E-value=68 Score=28.92 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 038305 243 SEGERQAHINIADGKKTSVILESEAAKMDQ 272 (414)
Q Consensus 243 Ae~e~~~~i~~Ae~~a~~~~~~AeA~ae~~ 272 (414)
|+.+.+..+.+|+.+++..+.+|+.+++..
T Consensus 14 a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i 43 (188)
T PRK02292 14 ARARASEIRAEADEEAEEIIAEAEADAEEI 43 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555454444444433
No 99
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=73.62 E-value=70 Score=28.88 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=11.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Q 038305 269 KMDQVNRAQGEAEAIIAKAQATAK 292 (414)
Q Consensus 269 ae~~~~~AegeA~a~~~~a~AeA~ 292 (414)
++..+..|+.+++++...++.+.+
T Consensus 107 ~~~il~~A~~ea~~~~~~a~~~ie 130 (184)
T CHL00019 107 KENLINQAKEDLERLENYKNETIR 130 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555554444433
No 100
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=73.62 E-value=73 Score=29.11 Aligned_cols=36 Identities=8% Similarity=0.212 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 038305 231 EAERKKRAQILESEGERQAHINIADGKKTSVILESE 266 (414)
Q Consensus 231 ~Aeq~~~a~i~eAe~e~~~~i~~Ae~~a~~~~~~Ae 266 (414)
.+.++++..+..|+.+++..+..|+.+++..+..|+
T Consensus 27 ~~~~~a~~IL~~A~~qA~~Il~~Ae~eAe~l~~~a~ 62 (191)
T PF06188_consen 27 AAQQQAREILEDARQQAEQILQQAEEEAEALLEQAY 62 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666777777777777777666666433
No 101
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=72.59 E-value=8.3 Score=34.91 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=18.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHH
Q 038305 271 DQVNRAQGEAEAIIAKAQATAKG 293 (414)
Q Consensus 271 ~~~~~AegeA~a~~~~a~AeA~a 293 (414)
..+.+|++||++..++|+++|++
T Consensus 173 ~~~~~a~~ea~~~~~~A~gea~a 195 (196)
T cd03401 173 FVVEKAEQEKQAAVIRAEGEAEA 195 (196)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhc
Confidence 45777889999988888888875
No 102
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated
Probab=72.19 E-value=13 Score=32.19 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhccchhhhH--hhHHHHHHHHHHHHHHHHhhc-C-cEEeEEEEeec
Q 038305 164 QLAQTTMRSELGKITLDKTF--EERDTLNEKIVEAINVAARDW-G-LQCLRYEIRDI 216 (414)
Q Consensus 164 ~~~~~~lR~vi~~~tl~ei~--~~R~~l~~~i~~~l~~~l~~~-G-I~I~~V~I~di 216 (414)
+.+++.+-.++++.+.+++. +.|+.|.+++++.++..+..- | -.|.+|.++++
T Consensus 78 P~IRd~ii~lLs~~t~~eL~t~eGke~Lr~eil~~in~~L~~~~g~~~V~~VlFT~F 134 (137)
T PRK05697 78 PLIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNELLEQETGKPLVVDLLFTKY 134 (137)
T ss_pred HHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHHhhccCCCceeEEeeeee
Confidence 66889999999999999997 789999999999999999753 2 24888888775
No 103
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=71.30 E-value=39 Score=30.69 Aligned_cols=83 Identities=14% Similarity=0.124 Sum_probs=55.4
Q ss_pred eecCCC--ceEEEEEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHhccchhhhHhhHHHHHHHHHHHHHHHHhhc
Q 038305 127 AITKDN--VSILIDGVLYVKIVDPKLASYGVENPIYAVIQLAQTTMRSELGKITLDKTFEERDTLNEKIVEAINVAARDW 204 (414)
Q Consensus 127 v~TkD~--~~v~vd~~v~yrI~dp~~~~~~~~~~~~~i~~~~~~~lR~vi~~~tl~ei~~~R~~l~~~i~~~l~~~l~~~ 204 (414)
+.+.|. ..+.+.+++.|...++... ..-..-...+++.+...+++++.+|+. .+++|.+++++.+|..|.+
T Consensus 93 vNLaD~~~~r~~vki~l~~e~~d~~l~-----~EL~~r~pqIRD~Ii~~LssKt~~eL~-Gk~~LKeEI~~rIN~iL~~- 165 (181)
T PRK06654 93 GNTADTPPKTFVVKLALGYAENNKNIL-----NELGRRKVRLKDIIREYFSQKTGQELK-NESQIKAEIKARINSILRN- 165 (181)
T ss_pred EEcCCCCCceEEEEEEEEEEcCCHHHH-----HHHHhccHHHHHHHHHHHHhCCHHHHc-CHHHHHHHHHHHHHHhcCC-
Confidence 445554 3344556666654443220 000112356789999999999999999 8899999999999988875
Q ss_pred CcEEeEEEEeecC
Q 038305 205 GLQCLRYEIRDIS 217 (414)
Q Consensus 205 GI~I~~V~I~di~ 217 (414)
| .|.+|.++++.
T Consensus 166 G-kV~~VYFTeFv 177 (181)
T PRK06654 166 G-EIKDIAFTQID 177 (181)
T ss_pred C-ceEEEEEEEEE
Confidence 2 36777777653
No 104
>PLN03086 PRLI-interacting factor K; Provisional
Probab=71.15 E-value=6.6 Score=41.90 Aligned_cols=11 Identities=36% Similarity=0.715 Sum_probs=8.2
Q ss_pred hcCCEEEeCCC
Q 038305 327 KEGNTLLLPSS 337 (414)
Q Consensus 327 ~~~~~vvl~~~ 337 (414)
+++++++||+.
T Consensus 89 ~~GdKI~LPpS 99 (567)
T PLN03086 89 GNGDKIKLPPS 99 (567)
T ss_pred CCCCeEEcCHH
Confidence 36778999873
No 105
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=69.78 E-value=72 Score=27.43 Aligned_cols=7 Identities=43% Similarity=0.572 Sum_probs=2.7
Q ss_pred hhhhHhh
Q 038305 179 LDKTFEE 185 (414)
Q Consensus 179 l~ei~~~ 185 (414)
+..++.+
T Consensus 20 i~~~l~~ 26 (147)
T TIGR01144 20 LAKAIET 26 (147)
T ss_pred HHHHHHH
Confidence 3334433
No 106
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=69.62 E-value=83 Score=28.08 Aligned_cols=20 Identities=15% Similarity=0.127 Sum_probs=8.5
Q ss_pred HHHHHHhhHHHHHHHHHHHH
Q 038305 271 DQVNRAQGEAEAIIAKAQAT 290 (414)
Q Consensus 271 ~~~~~AegeA~a~~~~a~Ae 290 (414)
..+..|+.+++++...++.+
T Consensus 104 ~~~~~A~~e~~~~~~~a~~~ 123 (174)
T PRK07352 104 EIEKQAIEDMARLKQTAAAD 123 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 107
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=69.14 E-value=81 Score=27.78 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=16.4
Q ss_pred HHHHHhhhhhhHHHHHHHHHHH----HHHHHhhHHHHHHHHHHH
Q 038305 250 HINIADGKKTSVILESEAAKMD----QVNRAQGEAEAIIAKAQA 289 (414)
Q Consensus 250 ~i~~Ae~~a~~~~~~AeA~ae~----~~~~AegeA~a~~~~a~A 289 (414)
.+..|+.+++..+..|+.+++. .+..|+.+++++...+++
T Consensus 68 ~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~ 111 (164)
T PRK14471 68 LLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQAKA 111 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433332 223344444444444333
No 108
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=69.08 E-value=85 Score=28.00 Aligned_cols=22 Identities=18% Similarity=0.148 Sum_probs=9.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH
Q 038305 269 KMDQVNRAQGEAEAIIAKAQAT 290 (414)
Q Consensus 269 ae~~~~~AegeA~a~~~~a~Ae 290 (414)
++..+..|+.+++++...++.+
T Consensus 99 ~~~~~~~A~~ea~~~~~~a~~~ 120 (173)
T PRK13460 99 KNKLLEETNNEVKAQKDQAVKE 120 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 109
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=69.04 E-value=80 Score=27.66 Aligned_cols=19 Identities=11% Similarity=0.190 Sum_probs=7.2
Q ss_pred HHHhhhhhhHHHHHHHHHH
Q 038305 252 NIADGKKTSVILESEAAKM 270 (414)
Q Consensus 252 ~~Ae~~a~~~~~~AeA~ae 270 (414)
..|+.+++..+..|+.+++
T Consensus 64 ~~A~~ea~~ii~~A~~~a~ 82 (159)
T PRK09173 64 KEAEKEAADIVAAAEREAE 82 (159)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 110
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=68.79 E-value=86 Score=27.92 Aligned_cols=43 Identities=9% Similarity=0.139 Sum_probs=17.4
Q ss_pred HHHHHHHhhhhhhHHHHHHHH----HHHHHHHHhhHHHHHHHHHHHH
Q 038305 248 QAHINIADGKKTSVILESEAA----KMDQVNRAQGEAEAIIAKAQAT 290 (414)
Q Consensus 248 ~~~i~~Ae~~a~~~~~~AeA~----ae~~~~~AegeA~a~~~~a~Ae 290 (414)
+..+..|+.+++..+..|+.+ ++..+.+|+.++++....++..
T Consensus 80 e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ 126 (167)
T PRK08475 80 LKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEEL 126 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444443333322 3333444444444444444333
No 111
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=68.44 E-value=92 Score=28.13 Aligned_cols=14 Identities=7% Similarity=0.147 Sum_probs=5.4
Q ss_pred HHHHHhhhhhhHHH
Q 038305 250 HINIADGKKTSVIL 263 (414)
Q Consensus 250 ~i~~Ae~~a~~~~~ 263 (414)
.+..|+.++...+.
T Consensus 91 ~L~~Ar~EA~~ii~ 104 (181)
T PRK13454 91 ALADARAEAQRIVA 104 (181)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444433333
No 112
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=67.84 E-value=1e+02 Score=28.36 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhhhcCCEEEeCC
Q 038305 315 AEQYIQAFGNIAKEGNTLLLPS 336 (414)
Q Consensus 315 ~~~~~e~l~~ia~~~~~vvl~~ 336 (414)
.....+.+.+..++..+++...
T Consensus 107 ~~ll~~~~~~~~~~~~iV~~~e 128 (194)
T COG1390 107 QELLIEALEKLLGGELVVYLNE 128 (194)
T ss_pred HHHHHHHHHhcCCCCeEEEeCc
Confidence 3344444554444444544444
No 113
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=67.59 E-value=92 Score=27.83 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=9.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHH
Q 038305 270 MDQVNRAQGEAEAIIAKAQAT 290 (414)
Q Consensus 270 e~~~~~AegeA~a~~~~a~Ae 290 (414)
+..+..|+.++++....++.+
T Consensus 102 ~~~~~~A~~ea~~~~~~A~~~ 122 (173)
T PRK13453 102 EQIIHEANVRANGMIETAQSE 122 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555544444433
No 114
>PRK15322 invasion protein OrgB; Provisional
Probab=67.45 E-value=1e+02 Score=28.43 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhhhcCCEEEeCCCCCChHH
Q 038305 311 SLRVAEQYIQAFGNIAKEGNTLLLPSSASSPAN 343 (414)
Q Consensus 311 ~~~~~~~~~e~l~~ia~~~~~vvl~~~~~~~~~ 343 (414)
-+.+.+.|+-.+++.. ..-.+++|.++.....
T Consensus 95 LL~~le~Wl~~l~~~~-~pL~l~lP~~ak~~~~ 126 (210)
T PRK15322 95 LLTVLDEWLRDFDKPE-GQLFLTLPVNAKKDHQ 126 (210)
T ss_pred HHHHHHHHHHhCcccc-CceeEecChhhhhhHH
Confidence 3456667777776533 3446899998766533
No 115
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=66.93 E-value=60 Score=29.65 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038305 232 AERKKRAQILESEGERQAHINIA 254 (414)
Q Consensus 232 Aeq~~~a~i~eAe~e~~~~i~~A 254 (414)
|+++++..+.+|+.+++..+..|
T Consensus 39 A~~qA~~Il~~Ae~eAe~l~~~a 61 (191)
T PF06188_consen 39 ARQQAEQILQQAEEEAEALLEQA 61 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555444433
No 116
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=63.85 E-value=70 Score=33.30 Aligned_cols=9 Identities=11% Similarity=0.375 Sum_probs=4.1
Q ss_pred hhhhHhhHH
Q 038305 179 LDKTFEERD 187 (414)
Q Consensus 179 l~ei~~~R~ 187 (414)
+..++.+|.
T Consensus 26 i~~~l~~R~ 34 (445)
T PRK13428 26 VRRLMAARQ 34 (445)
T ss_pred HHHHHHHHH
Confidence 445554443
No 117
>PRK09098 type III secretion system protein HrpB; Validated
Probab=62.62 E-value=1.4e+02 Score=28.20 Aligned_cols=56 Identities=23% Similarity=0.315 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 038305 238 AQILESEGERQAHINIADGKKTSVILESEAAKMDQVNRAQGEAEAIIAKAQATAKGLA 295 (414)
Q Consensus 238 a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~~~~~AegeA~a~~~~a~AeA~a~~ 295 (414)
+.......+++..+.+|+.+++..+.+|++++++.+..|+.+++. ...+++.++.+
T Consensus 32 ~~~~~~~~~~~~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~--~~~~Gy~eG~~ 87 (233)
T PRK09098 32 AALAAVHAERDAVLAAARARAERIVAEARAQAEAILEAARREADR--SARRGYAAGLR 87 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 344445566777777777777777777777777777777766554 33344444433
No 118
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=62.53 E-value=1.1e+02 Score=26.93 Aligned_cols=44 Identities=23% Similarity=0.352 Sum_probs=20.3
Q ss_pred HHHHHHHhhhhhhHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHH
Q 038305 248 QAHINIADGKKTSVILESEA----AKMDQVNRAQGEAEAIIAKAQATA 291 (414)
Q Consensus 248 ~~~i~~Ae~~a~~~~~~AeA----~ae~~~~~AegeA~a~~~~a~AeA 291 (414)
+..+..|+.++...+..|.. ..+..+..|+.+++++...++++.
T Consensus 66 e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I 113 (164)
T PRK14473 66 EAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQA 113 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333 333455555555555554444433
No 119
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=62.50 E-value=26 Score=31.06 Aligned_cols=53 Identities=8% Similarity=-0.004 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhccchhhhH--hhHHHHHHHHHHHHHHHHhhcC--cEEeEEEEeec
Q 038305 164 QLAQTTMRSELGKITLDKTF--EERDTLNEKIVEAINVAARDWG--LQCLRYEIRDI 216 (414)
Q Consensus 164 ~~~~~~lR~vi~~~tl~ei~--~~R~~l~~~i~~~l~~~l~~~G--I~I~~V~I~di 216 (414)
+.+++.+-.+++..+.+++. +.++.|.+++++.++..+..-+ -.|.+|.++++
T Consensus 103 p~IRd~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~~l~~~~~~~~V~~VlFt~f 159 (162)
T PRK07021 103 PEVRSRLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQPLVPGQPPQVVTDVLFTAF 159 (162)
T ss_pred HHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCceeEEeeeec
Confidence 46788888999999999997 6899999999999999886532 35888888775
No 120
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=61.47 E-value=1.1e+02 Score=30.15 Aligned_cols=17 Identities=41% Similarity=0.466 Sum_probs=6.7
Q ss_pred hhHHHHHHHHHHHHHHH
Q 038305 277 QGEAEAIIAKAQATAKG 293 (414)
Q Consensus 277 egeA~a~~~~a~AeA~a 293 (414)
+.||.+...++++++++
T Consensus 197 EaEAkaa~ekAk~e~~a 213 (387)
T COG3064 197 EAEAKAAAEKAKAEAEA 213 (387)
T ss_pred HHHHHHHHHHhhhHHHH
Confidence 33333344444433333
No 121
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=61.41 E-value=73 Score=28.43 Aligned_cols=54 Identities=13% Similarity=0.219 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhccchhhhH--hhHHHHHHHHHHHHHHHHhhc-C-cEEeEEEEeec
Q 038305 163 IQLAQTTMRSELGKITLDKTF--EERDTLNEKIVEAINVAARDW-G-LQCLRYEIRDI 216 (414)
Q Consensus 163 ~~~~~~~lR~vi~~~tl~ei~--~~R~~l~~~i~~~l~~~l~~~-G-I~I~~V~I~di 216 (414)
.+.+++.+-.++++.+.+++. ..++.|.+++.+.++..++.. | -.|.+|.++++
T Consensus 110 ~p~IRd~i~~~Ls~k~~~~L~~~~gk~~Lr~el~~~i~~~l~~~~g~~~V~~VlFt~f 167 (170)
T PRK05696 110 IPLIESALLMTFSSATVDQLSTPAGKEELRQKALASVQETLQKVTGKPVVEKVLFTGF 167 (170)
T ss_pred hHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCceeEEeeeec
Confidence 356889999999999999998 679999999999999888754 3 25788888775
No 122
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=61.09 E-value=25 Score=31.96 Aligned_cols=52 Identities=17% Similarity=0.191 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhccchhhhH--hhHHHHHHHHHHHHHHHHhhcCcEEeEEEEeec
Q 038305 163 IQLAQTTMRSELGKITLDKTF--EERDTLNEKIVEAINVAARDWGLQCLRYEIRDI 216 (414)
Q Consensus 163 ~~~~~~~lR~vi~~~tl~ei~--~~R~~l~~~i~~~l~~~l~~~GI~I~~V~I~di 216 (414)
.+.+++.+-.++++.+.+++. ..++.|.+++.+.+|..+.+ | .|.+|.++++
T Consensus 126 ~p~IRD~ii~~Ls~kt~~dL~t~~Gk~~Lk~ei~~~iN~~L~~-g-~V~~VyFT~F 179 (182)
T PRK08455 126 DPVIRDIIIRILSSKTVEEVSTNKGKERLKDEIVGKLNEFLID-G-FIKNVFFTDF 179 (182)
T ss_pred hhHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHhcc-C-ceeEEEeEee
Confidence 356889999999999999998 67999999999999999976 3 5778888775
No 123
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=60.26 E-value=1.2e+02 Score=26.56 Aligned_cols=45 Identities=24% Similarity=0.313 Sum_probs=20.9
Q ss_pred HHHHHHHhhhhhhHHHHH----HHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 038305 248 QAHINIADGKKTSVILES----EAAKMDQVNRAQGEAEAIIAKAQATAK 292 (414)
Q Consensus 248 ~~~i~~Ae~~a~~~~~~A----eA~ae~~~~~AegeA~a~~~~a~AeA~ 292 (414)
+..+..|+.++...+.+| +..++..+..|+.+++++...++++.+
T Consensus 63 ~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~ 111 (159)
T PRK13461 63 ERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQ 111 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333 333444455555555555555544433
No 124
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=59.92 E-value=26 Score=31.25 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhccchhhhH--hhHHHHHHHHHHHHHHHHhhcCcEEeEEEEeec
Q 038305 164 QLAQTTMRSELGKITLDKTF--EERDTLNEKIVEAINVAARDWGLQCLRYEIRDI 216 (414)
Q Consensus 164 ~~~~~~lR~vi~~~tl~ei~--~~R~~l~~~i~~~l~~~l~~~GI~I~~V~I~di 216 (414)
+.+++.+-.++++.+.+++. ..++.|.+++++.++..+.+ | .|.+|.++++
T Consensus 111 p~Ird~i~~~Ls~~~~~~L~~~~Gk~~Lr~ei~~~in~~l~~-~-~V~~VlFt~F 163 (166)
T PRK12785 111 PRVTDAFQTYLRELRPSDLNGSAGLFRLKEELLRRVNVALAP-A-QVNAVLFKEV 163 (166)
T ss_pred hHHHHHHHHHHHhCCHHHhcChHHHHHHHHHHHHHHHhhcCC-C-ceeEEEEEee
Confidence 56788888999999999998 57999999999999998875 3 3888888775
No 125
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=59.91 E-value=1.3e+02 Score=28.47 Aligned_cols=64 Identities=23% Similarity=0.250 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-----hhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 038305 232 AERKKRAQILESEGERQAHINIAD-----GKKTSVILESEAAKMDQVNRAQGEAEAIIAKAQATAKGLA 295 (414)
Q Consensus 232 Aeq~~~a~i~eAe~e~~~~i~~Ae-----~~a~~~~~~AeA~ae~~~~~AegeA~a~~~~a~AeA~a~~ 295 (414)
||-++...+.|||..++...+.-+ .+-++.+.+-|.++--.+.+++++|+-..+.-+|++.-++
T Consensus 207 AETerkkAviEAEK~AqVa~I~~qqkl~EKetekr~~eiE~~~~LarekskADAe~Y~a~k~AeaNKlk 275 (322)
T KOG2962|consen 207 AETERKKAVIEAEKNAQVAKILMQQKLMEKETEKRISEIEDAAFLAREKSKADAEYYRALKEAEANKLK 275 (322)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHhHhhhhhhccHHHHHHHHHHhhcccc
Confidence 444555556666665554443322 2223334444444444455566666666555555554433
No 126
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=59.71 E-value=1.3e+02 Score=27.20 Aligned_cols=30 Identities=23% Similarity=0.107 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 038305 232 AERKKRAQILESEGERQAHINIADGKKTSV 261 (414)
Q Consensus 232 Aeq~~~a~i~eAe~e~~~~i~~Ae~~a~~~ 261 (414)
|+++++..+.+|+.++...+.+|+.+++..
T Consensus 14 a~~~a~~I~~eA~~~aeei~~ea~~~a~~~ 43 (185)
T PRK01194 14 REEKKKEINDEYSKRIEKLEKECDSKIQSI 43 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555554444
No 127
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=58.25 E-value=1.1e+02 Score=25.49 Aligned_cols=8 Identities=50% Similarity=0.530 Sum_probs=2.9
Q ss_pred HHHhhHHH
Q 038305 274 NRAQGEAE 281 (414)
Q Consensus 274 ~~AegeA~ 281 (414)
..|+.+++
T Consensus 87 ~ea~~~~~ 94 (132)
T PF00430_consen 87 AEAEKEAE 94 (132)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 128
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=57.75 E-value=1.1e+02 Score=25.39 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 038305 231 EAERKKRAQILESEGERQAHINIADGKKT 259 (414)
Q Consensus 231 ~Aeq~~~a~i~eAe~e~~~~i~~Ae~~a~ 259 (414)
.|..++...+.+|+.+....+.+|+.+++
T Consensus 25 eAkEe~~~~i~eAr~eareiieeaE~eA~ 53 (108)
T COG2811 25 EAKEEAEQIIKEAREEAREIIEEAEEEAE 53 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666655543
No 129
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=55.23 E-value=1.5e+02 Score=26.23 Aligned_cols=10 Identities=10% Similarity=0.033 Sum_probs=4.2
Q ss_pred HHHHHHHHHh
Q 038305 316 EQYIQAFGNI 325 (414)
Q Consensus 316 ~~~~e~l~~i 325 (414)
..|-+.+.++
T Consensus 124 ~~~~~~~i~~ 133 (155)
T PRK06569 124 TNKSEAIIKL 133 (155)
T ss_pred HhHHHHHHHH
Confidence 3444444443
No 130
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=53.82 E-value=2e+02 Score=27.32 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhH
Q 038305 240 ILESEGERQAHINIADGKKTSV 261 (414)
Q Consensus 240 i~eAe~e~~~~i~~Ae~~a~~~ 261 (414)
+..|+.+++..+..|+.+++..
T Consensus 46 l~~Ar~eA~~Ii~~A~~~a~~~ 67 (255)
T TIGR03825 46 LEKAEAEAAQIIEQAEAQAAAI 67 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 131
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=53.35 E-value=1.7e+02 Score=26.19 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038305 231 EAERKKRAQILESEGERQAHINIADGKK 258 (414)
Q Consensus 231 ~Aeq~~~a~i~eAe~e~~~~i~~Ae~~a 258 (414)
.|+.+.+..+.+|+.+.+..+.+++.++
T Consensus 5 eA~~ka~~I~~eA~~e~~~i~~~~~~~~ 32 (198)
T PF01991_consen 5 EAQEKAEEIIAEAQEEAEKILEEAEEEA 32 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554444433
No 132
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=52.55 E-value=1.7e+02 Score=25.91 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=18.2
Q ss_pred HHHHHHHhhhhhhHHHHHHHH----HHHHHHHHhhHHHHHHHHHHHH
Q 038305 248 QAHINIADGKKTSVILESEAA----KMDQVNRAQGEAEAIIAKAQAT 290 (414)
Q Consensus 248 ~~~i~~Ae~~a~~~~~~AeA~----ae~~~~~AegeA~a~~~~a~Ae 290 (414)
+..+.+|+.+++..+..|..+ .+..+.+|+.+++++...++++
T Consensus 64 ~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~a~~~ 110 (161)
T COG0711 64 EQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAE 110 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433333 3333444444444444444433
No 133
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=51.78 E-value=1.9e+02 Score=26.25 Aligned_cols=26 Identities=8% Similarity=0.059 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHH
Q 038305 243 SEGERQAHINIADGKKTSVILESEAA 268 (414)
Q Consensus 243 Ae~e~~~~i~~Ae~~a~~~~~~AeA~ 268 (414)
|+.+++..+.+|+.+++..+.+|+++
T Consensus 14 a~~~a~~I~~eA~~~aeei~~ea~~~ 39 (185)
T PRK01194 14 REEKKKEINDEYSKRIEKLEKECDSK 39 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 134
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=50.98 E-value=1.9e+02 Score=26.14 Aligned_cols=27 Identities=22% Similarity=0.147 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038305 232 AERKKRAQILESEGERQAHINIADGKK 258 (414)
Q Consensus 232 Aeq~~~a~i~eAe~e~~~~i~~Ae~~a 258 (414)
|+.+++..+.+|+.+++..+.+|+.++
T Consensus 15 A~~ea~~il~~A~~~a~~i~~~a~~~a 41 (198)
T PRK03963 15 AEQKIEYILEEAQKEAEKIKEEARKRA 41 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445554444444444333
No 135
>PRK15322 invasion protein OrgB; Provisional
Probab=50.76 E-value=2.1e+02 Score=26.52 Aligned_cols=22 Identities=9% Similarity=0.081 Sum_probs=9.5
Q ss_pred HHHHHhhhhhhHHHHHHHHHHH
Q 038305 250 HINIADGKKTSVILESEAAKMD 271 (414)
Q Consensus 250 ~i~~Ae~~a~~~~~~AeA~ae~ 271 (414)
.+.+|+.++...+.+|+.++++
T Consensus 17 l~~qA~~kA~~ii~qA~~eaE~ 38 (210)
T PRK15322 17 LEQQARRRAKRILRQAEEEAET 38 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 136
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=50.39 E-value=1.9e+02 Score=26.07 Aligned_cols=11 Identities=18% Similarity=0.329 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 038305 343 NMIAQALTMYK 353 (414)
Q Consensus 343 ~~~~~~~~~~~ 353 (414)
.++...+..++
T Consensus 132 ~~~~~~~~~~~ 142 (198)
T PRK03963 132 KLIDSRLEEIR 142 (198)
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 137
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=49.88 E-value=67 Score=30.68 Aligned_cols=21 Identities=24% Similarity=0.185 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038305 231 EAERKKRAQILESEGERQAHI 251 (414)
Q Consensus 231 ~Aeq~~~a~i~eAe~e~~~~i 251 (414)
.|+.++...+.+|+.+++...
T Consensus 48 ~Ar~eA~~Ii~~A~~~a~~~~ 68 (255)
T TIGR03825 48 KAEAEAAQIIEQAEAQAAAIR 68 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555443
No 138
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=48.63 E-value=2.7e+02 Score=27.56 Aligned_cols=8 Identities=0% Similarity=-0.255 Sum_probs=3.5
Q ss_pred cccceeEE
Q 038305 68 PPVNWGIR 75 (414)
Q Consensus 68 ~~~~~~~~ 75 (414)
+++|++++
T Consensus 28 lLIwgS~~ 35 (387)
T COG3064 28 LLIWGSLD 35 (387)
T ss_pred HHHHhhhh
Confidence 34444443
No 139
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=48.02 E-value=1.5e+02 Score=32.49 Aligned_cols=39 Identities=5% Similarity=0.115 Sum_probs=23.6
Q ss_pred HHHHHHH-HHhhcCcEEeEEE----EeecCCcHHHHHHHHhhHH
Q 038305 193 IVEAINV-AARDWGLQCLRYE----IRDISPPRGVRAAMEMQAE 231 (414)
Q Consensus 193 i~~~l~~-~l~~~GI~I~~V~----I~di~~p~~i~~ai~~~~~ 231 (414)
.-+.|++ .|...||.|++-. +-....++++.+..+++..
T Consensus 519 ~~D~iRd~~L~~~Gi~l~D~~~g~~~~~~~~~~~~~~~~~~~~~ 562 (651)
T PTZ00399 519 LCDKLRDEWLPNLGIRIEDKPDGPSVWKLDDKEELQREKEEKEA 562 (651)
T ss_pred HHHHHHHHHHHHCCCEEEEcCCCceEEEECCHHHHHHHHHHHHH
Confidence 3466777 5889999998852 2223345555555544433
No 140
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=47.88 E-value=2.6e+02 Score=26.90 Aligned_cols=32 Identities=6% Similarity=-0.011 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 038305 231 EAERKKRAQILESEGERQAHINIADGKKTSVI 262 (414)
Q Consensus 231 ~Aeq~~~a~i~eAe~e~~~~i~~Ae~~a~~~~ 262 (414)
.+..++...+.+|+.+.+..+.+|+.+++...
T Consensus 85 ~~~~ea~~~l~~a~~q~e~~~~ea~~e~e~~~ 116 (281)
T PRK06669 85 KKTDEASSIIEKLQMQIEREQEEWEEELERLI 116 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443333
No 141
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.77 E-value=1.6e+02 Score=32.70 Aligned_cols=20 Identities=35% Similarity=0.353 Sum_probs=8.3
Q ss_pred HHHhhHHHHHHHHHHHHHHH
Q 038305 225 AMEMQAEAERKKRAQILESE 244 (414)
Q Consensus 225 ai~~~~~Aeq~~~a~i~eAe 244 (414)
+++++++.+++..++..+.|
T Consensus 335 ~leeqqqreree~eqkEreE 354 (1118)
T KOG1029|consen 335 ALEEQQQREREEVEQKEREE 354 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444433333
No 142
>PRK15354 type III secretion system protein SsaK; Provisional
Probab=46.67 E-value=1.4e+02 Score=27.78 Aligned_cols=56 Identities=16% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 038305 238 AQILESEGERQAHINIADGKKTSVILESEAAKMDQVNRAQGEAEAIIAKAQATAKG 293 (414)
Q Consensus 238 a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~~~~~AegeA~a~~~~a~AeA~a 293 (414)
+....|.......+..|..++..++..|+.++.+...+|+-++++.+....-.-++
T Consensus 34 ~~e~~a~~~s~~il~~A~rkA~~I~q~A~~~~~~ll~qaqqqad~L~~~~~~~~E~ 89 (224)
T PRK15354 34 AQEQQAKRVSHAIVSSAYRKAEKIIRDAYRYQREQKVEQQQELACLRKNTLEKMEV 89 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 143
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=45.30 E-value=2.1e+02 Score=24.97 Aligned_cols=31 Identities=16% Similarity=0.182 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 038305 238 AQILESEGERQAHINIADGKKTSVILESEAA 268 (414)
Q Consensus 238 a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ 268 (414)
.....|+.+++..+..|+.+++..+.++..+
T Consensus 61 ~~L~~A~~ea~~ii~~A~~~a~~~~~~a~~~ 91 (159)
T PRK09173 61 RKRKEAEKEAADIVAAAEREAEALTAEAKRK 91 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555444443333
No 144
>PRK04057 30S ribosomal protein S3Ae; Validated
Probab=43.48 E-value=1.7e+02 Score=27.12 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=51.3
Q ss_pred eeecCCCceEEEEEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHhccchhhhHhhHHHHHHHHHHHHHHHHhhcC
Q 038305 126 SAITKDNVSILIDGVLYVKIVDPKLASYGVENPIYAVIQLAQTTMRSELGKITLDKTFEERDTLNEKIVEAINVAARDWG 205 (414)
Q Consensus 126 ~v~TkD~~~v~vd~~v~yrI~dp~~~~~~~~~~~~~i~~~~~~~lR~vi~~~tl~ei~~~R~~l~~~i~~~l~~~l~~~G 205 (414)
++.|+||..+.|-+.+.-+-. --......|+....+.+...++.++++++...- +...+...+...+...
T Consensus 101 dvkTkDGy~lRv~~i~~T~~r-------a~~sq~~~IRk~m~~~i~~~~~~~~~~e~V~~~--i~g~i~~eI~~~~k~I- 170 (203)
T PRK04057 101 DVTTKDGYKVRVKPVALTTKR-------ARTSQKHAIRKIMEEIIEEKASELTFEEFVQEI--VFGKLASEIYKEAKKI- 170 (203)
T ss_pred EEEcCCCCEEEEEEEEEEchh-------hhhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHH--ccchHHHHHHHhhhhc-
Confidence 478999999998866543210 113456778888999999999999999998432 3334444444444432
Q ss_pred cEEeEEEEeec
Q 038305 206 LQCLRYEIRDI 216 (414)
Q Consensus 206 I~I~~V~I~di 216 (414)
+-+.+|.|+.+
T Consensus 171 yPlr~veIrKv 181 (203)
T PRK04057 171 YPLRRVEIRKS 181 (203)
T ss_pred cCcceEEEEEE
Confidence 12334555444
No 145
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=42.11 E-value=3.2e+02 Score=26.27 Aligned_cols=43 Identities=14% Similarity=0.095 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 038305 234 RKKRAQILESEGERQAHINIADGKKTSVILESEAAKMDQVNRA 276 (414)
Q Consensus 234 q~~~a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~~~~~A 276 (414)
.+......++..++...+.+|+.+++..+.+|+.+++.....|
T Consensus 77 ~~a~~~l~~~~~ea~~~l~~a~~q~e~~~~ea~~e~e~~~~~a 119 (281)
T PRK06669 77 EEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIEEA 119 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555666666666666666666665554443333
No 146
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=40.61 E-value=2.7e+02 Score=24.85 Aligned_cols=8 Identities=38% Similarity=0.679 Sum_probs=4.0
Q ss_pred CCccccCC
Q 038305 403 PGFSLQNP 410 (414)
Q Consensus 403 ~~~~~~~~ 410 (414)
-||-+.++
T Consensus 161 GG~il~~~ 168 (198)
T PF01991_consen 161 GGFILESE 168 (198)
T ss_dssp SEEEEECS
T ss_pred ceEEEEEC
Confidence 35555544
No 147
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=38.91 E-value=51 Score=27.59 Aligned_cols=44 Identities=32% Similarity=0.358 Sum_probs=0.0
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 038305 251 INIADGKKTSVILESEAAKMDQVNRAQGEAEAIIAKAQATAKGL 294 (414)
Q Consensus 251 i~~Ae~~a~~~~~~AeA~ae~~~~~AegeA~a~~~~a~AeA~a~ 294 (414)
+..|+..+...+..|+.+++..+..|+.+|+.++..+.+++..+
T Consensus 69 l~~aq~~a~~~~~~A~~eA~~i~~~A~~~a~~i~~~A~~~~~~l 112 (131)
T PF05103_consen 69 LIQAQETADEIKAEAEEEAEEIIEEAQKEAEEIIEEARAEAERL 112 (131)
T ss_dssp --------------------------------------------
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555666666666666666665555555544443
No 148
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=36.13 E-value=40 Score=31.61 Aligned_cols=52 Identities=23% Similarity=0.246 Sum_probs=36.8
Q ss_pred CcHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 038305 218 PPRGVRAAMEMQAEAERKKRAQILESEGERQAHINIADGKKTSVILESEAAKM 270 (414)
Q Consensus 218 ~p~~i~~ai~~~~~Aeq~~~a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae 270 (414)
+...+...--.+++||+.+- -...||+++++.++.||++.+.+...+.+-+.
T Consensus 179 Ft~AvE~KQVAQQEAErarF-vVeKAeQqk~aavIsAEGds~aA~li~~sla~ 230 (271)
T KOG3083|consen 179 FTEAVEAKQVAQQEAERARF-VVEKAEQQKKAAVISAEGDSKAAELIANSLAT 230 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhhheeecccchHHHHHHHHHHhh
Confidence 56666666667888887764 34668888888888888887766665554433
No 149
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=35.81 E-value=2.5e+02 Score=23.17 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=23.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 038305 226 MEMQAEAERKKRAQILESEGERQAHINIADGKKTSVILESE 266 (414)
Q Consensus 226 i~~~~~Aeq~~~a~i~eAe~e~~~~i~~Ae~~a~~~~~~Ae 266 (414)
|..-++||.++...+.+|+..+...+.+|.-+++..+.+-.
T Consensus 8 IqQLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr 48 (108)
T KOG1772|consen 8 IQQLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYR 48 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666666655555554444433
No 150
>PHA00448 hypothetical protein
Probab=34.94 E-value=2e+02 Score=21.68 Aligned_cols=7 Identities=14% Similarity=-0.183 Sum_probs=2.5
Q ss_pred hhHHHHH
Q 038305 259 TSVILES 265 (414)
Q Consensus 259 ~~~~~~A 265 (414)
++.+..|
T Consensus 32 ~~A~~la 38 (70)
T PHA00448 32 TRARRLA 38 (70)
T ss_pred HHHHHHH
Confidence 3333333
No 151
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=34.80 E-value=5.7e+02 Score=28.75 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=9.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH
Q 038305 269 KMDQVNRAQGEAEAIIAKAQAT 290 (414)
Q Consensus 269 ae~~~~~AegeA~a~~~~a~Ae 290 (414)
++..+.+|+.+|+..+..++.+
T Consensus 564 ~~~~~~~~~~~a~~~l~~a~~~ 585 (782)
T PRK00409 564 EDKLLEEAEKEAQQAIKEAKKE 585 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 152
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=33.13 E-value=4.7e+02 Score=29.38 Aligned_cols=30 Identities=10% Similarity=0.122 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 038305 264 ESEAAKMDQVNRAQGEAEAIIAKAQATAKG 293 (414)
Q Consensus 264 ~AeA~ae~~~~~AegeA~a~~~~a~AeA~a 293 (414)
+.+.+++....+|+.+|+.++..++.+++.
T Consensus 554 ~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~ 583 (771)
T TIGR01069 554 ELKERERNKKLELEKEAQEALKALKKEVES 583 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555544443
No 153
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=30.83 E-value=83 Score=27.20 Aligned_cols=55 Identities=16% Similarity=0.309 Sum_probs=35.4
Q ss_pred eecCCCceEE--E-EEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHhccchhhhHhhHHHHHHHH
Q 038305 127 AITKDNVSIL--I-DGVLYVKIVDPKLASYGVENPIYAVIQLAQTTMRSELGKITLDKTFEERDTLNEKI 193 (414)
Q Consensus 127 v~TkD~~~v~--v-d~~v~yrI~dp~~~~~~~~~~~~~i~~~~~~~lR~vi~~~tl~ei~~~R~~l~~~i 193 (414)
-+|..|.+=+ + .+.|.||+.+|...+.+++.. -..+++|.++.++..+.+++.+.
T Consensus 80 ELTe~GKTKTanftTG~v~WR~rpPSv~vrgveaV------------~e~L~rmgf~rFiRTk~EinKeA 137 (170)
T COG4396 80 ELTENGKTKTANFTTGLVKWRIRPPSVKVRGVEAV------------LEWLSRMGFARFIRTKKEINKEA 137 (170)
T ss_pred HHhcCCCceeeeeeeeeEEEeecCCcceeccHHHH------------HHHHHHhhHHHHHHhHHHhcHHH
Confidence 3566664433 3 389999999998766554322 24456777777776677766543
No 154
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=29.37 E-value=3.7e+02 Score=23.18 Aligned_cols=103 Identities=19% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHH
Q 038305 238 AQILESEGERQAHINIADGKKTSVILESEAAKMDQVNRA--QGEAEAIIAKAQATAKGLAMVSQALKENGGLEAASLRVA 315 (414)
Q Consensus 238 a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~~~~~A--egeA~a~~~~a~AeA~a~~~~~eal~~~~~~~a~~~~~~ 315 (414)
+....+-.+++..+..|+.+++..+..|+.++++....+ +|-.+......+..+.......+.+.. +.-.+.
T Consensus 6 ~~~~~~~~~A~~il~~A~~~a~~i~~~A~~~~e~~~~~g~~~G~~~g~~e~~~~~~~~~~~~~~~~~~------~e~~l~ 79 (166)
T TIGR02499 6 AEDLAALAQAQAILAAARQRAEAILADAEEEAEASRQLGYEQGLEQFWQEAAAQLAEWQQEAEQLEAS------LEERLA 79 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
Q ss_pred HHHHHHHHHhhhcCCEEEeCCCCCChHHHHHHHHHHH
Q 038305 316 EQYIQAFGNIAKEGNTLLLPSSASSPANMIAQALTMY 352 (414)
Q Consensus 316 ~~~~e~l~~ia~~~~~vvl~~~~~~~~~~~~~~~~~~ 352 (414)
...+.+++++...- .+..-+..++.+.+..+
T Consensus 80 ~l~~~~~~kil~~~------~~~e~l~~lv~~al~~~ 110 (166)
T TIGR02499 80 ELVLQALEQILGEY------DEPERLVRLLRQLLRAV 110 (166)
T ss_pred HHHHHHHHHHhCCC------CCHHHHHHHHHHHHHhC
No 155
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=28.81 E-value=5.4e+02 Score=28.89 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=23.4
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 038305 252 NIADGKKTSVILESEAAKMDQVNRAQGEAEAIIAKAQA 289 (414)
Q Consensus 252 ~~Ae~~a~~~~~~AeA~ae~~~~~AegeA~a~~~~a~A 289 (414)
.+.+.+++..+..|+.+++..+.+|+.+++..+...+.
T Consensus 553 ~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 553 EELKERERNKKLELEKEAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344455556666666777777777777766655553
No 156
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=27.97 E-value=5.3e+02 Score=29.03 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=23.9
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 038305 254 ADGKKTSVILESEAAKMDQVNRAQGEAEAIIAKAQA 289 (414)
Q Consensus 254 Ae~~a~~~~~~AeA~ae~~~~~AegeA~a~~~~a~A 289 (414)
.+.+++..+.+|+.+++..+..|+.+++..+...+.
T Consensus 560 l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 560 LQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556667777777788888877776666654
No 157
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=25.27 E-value=9.4e+02 Score=27.09 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=8.8
Q ss_pred EEEecCCeEEEEEeC
Q 038305 74 IRIVPEKKAFVIERF 88 (414)
Q Consensus 74 ~~~V~~g~~gVv~r~ 88 (414)
+..|.|+...+-+.|
T Consensus 665 iRCiKPN~kM~~~~F 679 (1259)
T KOG0163|consen 665 IRCIKPNSKMIDRHF 679 (1259)
T ss_pred EEeecCccccccccc
Confidence 445666666665554
No 158
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=23.91 E-value=7.4e+02 Score=25.93 Aligned_cols=19 Identities=47% Similarity=0.564 Sum_probs=9.0
Q ss_pred HHHhhHHHHHHHHHHHHHH
Q 038305 274 NRAQGEAEAIIAKAQATAK 292 (414)
Q Consensus 274 ~~AegeA~a~~~~a~AeA~ 292 (414)
.+|+.|-+.++.+|.|+++
T Consensus 210 erae~EretiRvkA~Aeae 228 (630)
T KOG0742|consen 210 ERAEAERETIRVKAKAEAE 228 (630)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 3444444444445555544
No 159
>PF01015 Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: IPR001593 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins that have from 220 to 250 amino acids and represents Rps1 (eukaryotic) and Rps3Ae (archaeal and eukaryotic).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_4 2XZM_4 3U5C_B 3U5G_B.
Probab=23.64 E-value=4.3e+02 Score=24.23 Aligned_cols=80 Identities=18% Similarity=0.213 Sum_probs=50.8
Q ss_pred eeecCCCceEEEEEEEEEEecCccccccccC-CHHHHHHHHHHHHHHHHHhccchhhhHhhHHHHHHHHHHHHHHHHhhc
Q 038305 126 SAITKDNVSILIDGVLYVKIVDPKLASYGVE-NPIYAVIQLAQTTMRSELGKITLDKTFEERDTLNEKIVEAINVAARDW 204 (414)
Q Consensus 126 ~v~TkD~~~v~vd~~v~yrI~dp~~~~~~~~-~~~~~i~~~~~~~lR~vi~~~tl~ei~~~R~~l~~~i~~~l~~~l~~~ 204 (414)
++.|+||..+.|-....=+- ... .....|+....+.+.+.++.++++++... -+...+..++...+...
T Consensus 107 dvkT~DGy~lRvf~i~fT~~--------ra~~sq~~~IRk~m~~ii~~~~~~~~~~e~V~~--li~~~i~~eI~k~~k~I 176 (194)
T PF01015_consen 107 DVKTKDGYLLRVFCIAFTKK--------RAKSSQIKAIRKKMVEIITEEASELDLKELVKK--LIPGSIGKEIEKACKKI 176 (194)
T ss_dssp EEEETTTEEEEEEEEEEE------------TCHHHHHHHHHHHHHHHHHCCTSHHHHHHHH--HCTTHHHHHHHHHHCTT
T ss_pred EEEcCCCcEEEEEEEEEEee--------cccchHHHHHHHHHHHHHHHHhccCcHHHHHHH--HccchHHHHHHHHhccc
Confidence 47899999988875543211 122 35667888999999999999999999843 24444555555555542
Q ss_pred CcEEeEEEEeec
Q 038305 205 GLQCLRYEIRDI 216 (414)
Q Consensus 205 GI~I~~V~I~di 216 (414)
.-+.+|.|+.+
T Consensus 177 -yPl~~v~IrKv 187 (194)
T PF01015_consen 177 -YPLRNVEIRKV 187 (194)
T ss_dssp ---EEEEEEEEE
T ss_pred -cccceEEEEEE
Confidence 22345555544
No 160
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=22.94 E-value=4.4e+02 Score=21.80 Aligned_cols=42 Identities=19% Similarity=0.281 Sum_probs=24.7
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 038305 249 AHINIADGKKTSVILESEAAKMDQVNRAQGEAEAIIAKAQAT 290 (414)
Q Consensus 249 ~~i~~Ae~~a~~~~~~AeA~ae~~~~~AegeA~a~~~~a~Ae 290 (414)
..+..||.++...+.+|.-.+.+...+|+-||+.-......+
T Consensus 9 qQLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr~q 50 (108)
T KOG1772|consen 9 QQLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRSQ 50 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666666666555444433
No 161
>PLN03086 PRLI-interacting factor K; Provisional
Probab=22.93 E-value=4.8e+02 Score=28.19 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 038305 228 MQAEAERKKRAQILESEG 245 (414)
Q Consensus 228 ~~~~Aeq~~~a~i~eAe~ 245 (414)
.+.++||+.++...+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~ 27 (567)
T PLN03086 10 EKLEREQRERKQRAKLKL 27 (567)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445544444433333
No 162
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.23 E-value=3.7e+02 Score=28.55 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=7.2
Q ss_pred CccCCCCCCCCCCCC
Q 038305 28 DISSLIPRPQSNHPP 42 (414)
Q Consensus 28 ~~~~~~~~p~~~~~~ 42 (414)
||-++=-+|++-.++
T Consensus 138 DM~~LnvLpPtv~tR 152 (586)
T KOG2007|consen 138 DMAALNVLPPTVQTR 152 (586)
T ss_pred HHHHhCCCCCcccch
Confidence 444544455444444
No 163
>PTZ00321 ribosomal protein L11; Provisional
Probab=21.16 E-value=2.6e+02 Score=27.64 Aligned_cols=77 Identities=17% Similarity=0.289 Sum_probs=41.3
Q ss_pred CceEEEEEEEEEEecCccccccccCCH--HHHHHHHHH---HH-----HH-HHHhccchhhhHh----hHHHHH----HH
Q 038305 132 NVSILIDGVLYVKIVDPKLASYGVENP--IYAVIQLAQ---TT-----MR-SELGKITLDKTFE----ERDTLN----EK 192 (414)
Q Consensus 132 ~~~v~vd~~v~yrI~dp~~~~~~~~~~--~~~i~~~~~---~~-----lR-~vi~~~tl~ei~~----~R~~l~----~~ 192 (414)
|+.|.|.++|+ +...|.|.+..+ ..+|...+. ++ .+ +++|..|++++++ +..++. ..
T Consensus 97 GvpVPV~ITVy----~DKSF~F~IktPPtS~LLKKAAGI~KGS~~P~~~k~e~VG~ITlkQVyEIAkiK~~DLnal~~~~ 172 (342)
T PTZ00321 97 DVELIVRIQVY----FDKSYLFTIEPPPTAWFILRALRKKRRETGPVPLRGHYCALMTLEMAYEIAKMKPRSWGRPEYPL 172 (342)
T ss_pred CCeEeEEEEEe----CCCeEEEEECCCCHHHHHHHHhCCCCCCCCCCCCCCceEEeccHHHHHHHHHHhhhccccccccC
Confidence 56777766662 233454544433 233444432 11 23 6889999998873 223322 12
Q ss_pred ---HHHHHHHHHhhcCcEEeEEE
Q 038305 193 ---IVEAINVAARDWGLQCLRYE 212 (414)
Q Consensus 193 ---i~~~l~~~l~~~GI~I~~V~ 212 (414)
+...+-..+..+||.|+...
T Consensus 173 LesAvK~ViGTARSMGIkVeGKD 195 (342)
T PTZ00321 173 IETRVRRVVGQARRMGVCFIGVD 195 (342)
T ss_pred HHHHHHHHHhhHhcCeEEEeccc
Confidence 23333445678999998733
Done!