Query 038305
Match_columns 414
No_of_seqs 273 out of 2034
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 16:31:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038305.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038305hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bk6_A PH stomatin; archaea, t 99.9 3.2E-27 1.1E-31 214.9 16.4 142 105-247 2-143 (188)
2 4fvg_A Stomatin; mixed alpha-b 99.9 4.5E-26 1.5E-30 195.9 11.2 131 101-232 3-133 (133)
3 1win_A Flotillin 2; BAND 7 dom 99.8 3.9E-22 1.3E-26 173.5 5.6 129 105-234 3-140 (143)
4 2rpb_A Hypothetical membrane p 99.8 7.2E-20 2.5E-24 152.5 11.2 108 114-221 6-113 (113)
5 2zuo_A MVP, major vault protei 98.9 4.9E-07 1.7E-11 95.7 26.3 153 74-227 459-655 (861)
6 3v6i_B V-type ATP synthase, su 92.2 3.5 0.00012 32.4 12.4 37 233-269 15-51 (105)
7 3v6i_B V-type ATP synthase, su 82.0 5.5 0.00019 31.2 7.4 33 231-263 24-56 (105)
8 4efa_G V-type proton ATPase su 80.2 5 0.00017 32.7 7.0 48 224-271 10-57 (119)
9 4efa_G V-type proton ATPase su 79.2 11 0.00039 30.5 8.9 45 249-293 13-57 (119)
10 2kk7_A V-type ATP synthase sub 77.4 6 0.00021 27.2 5.7 27 265-291 19-45 (52)
11 3v6i_A V-type ATP synthase sub 76.2 31 0.0011 29.8 11.7 33 231-263 10-42 (187)
12 2kk7_A V-type ATP synthase sub 70.2 9.6 0.00033 26.2 5.3 27 255-281 20-46 (52)
13 2zuo_A MVP, major vault protei 70.1 81 0.0028 33.9 14.7 23 204-226 636-658 (861)
14 2k6i_A Uncharacterized protein 65.7 6.2 0.00021 27.6 3.5 28 254-281 24-51 (56)
15 2b5u_A Colicin E3; high resolu 57.6 1.5E+02 0.0052 29.8 13.1 45 204-248 278-322 (551)
16 3v6i_A V-type ATP synthase sub 48.5 1.3E+02 0.0044 25.7 15.2 36 241-276 9-44 (187)
17 3bk6_A PH stomatin; archaea, t 44.7 37 0.0013 29.2 6.0 53 264-330 127-179 (188)
18 1l2p_A ATP synthase B chain; a 39.0 93 0.0032 21.4 8.4 21 272-292 29-49 (61)
19 1l2p_A ATP synthase B chain; a 38.9 93 0.0032 21.4 8.2 20 263-282 31-50 (61)
20 2xzm_4 40S ribosomal protein S 34.0 2.8E+02 0.0096 25.5 10.6 87 126-215 129-220 (265)
21 2acm_B Mucin-1; auto-catalytic 28.2 84 0.0029 21.7 4.2 23 199-221 30-52 (55)
22 3j20_A 30S ribosomal protein S 23.1 3.8E+02 0.013 23.4 11.8 79 126-216 108-188 (198)
23 3u5c_B RP10A, 40S ribosomal pr 23.1 1.4E+02 0.0049 27.3 6.1 90 125-217 125-216 (255)
No 1
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.95 E-value=3.2e-27 Score=214.89 Aligned_cols=142 Identities=40% Similarity=0.642 Sum_probs=131.7
Q ss_pred ccceEEEeeccceEeeeCCCceeecCCCceEEEEEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHhccchhhhHh
Q 038305 105 FVDRIAYVHSLKEEAIPIPDQSAITKDNVSILIDGVLYVKIVDPKLASYGVENPIYAVIQLAQTTMRSELGKITLDKTFE 184 (414)
Q Consensus 105 ~i~~v~~v~~~r~q~~~~~~~~v~TkD~~~v~vd~~v~yrI~dp~~~~~~~~~~~~~i~~~~~~~lR~vi~~~tl~ei~~ 184 (414)
|++++..+ ++|.++++++.+.++|+||++|.|+++++|||.||..++|++.++...+.++++++||+++|+++++++++
T Consensus 2 fi~~v~~v-d~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~dp~~~~~~v~~~~~~i~~~~~~~lR~vig~~~l~ell~ 80 (188)
T 3bk6_A 2 IFEKAVIV-DLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQVKNYIMATSQISQTTLRSVIGQAHLDELLS 80 (188)
T ss_dssp CEEECCCC-CSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESCHHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred ceEEEEEE-eeeEEEEecCCceeEcCCCCEEEEEEEEEEEECCHHHHHHHhcCHHHHHHHHHHHHHHHHHccCCHHHHHh
Confidence 67888777 99999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhcCcEEeEEEEeecCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 038305 185 ERDTLNEKIVEAINVAARDWGLQCLRYEIRDISPPRGVRAAMEMQAEAERKKRAQILESEGER 247 (414)
Q Consensus 185 ~R~~l~~~i~~~l~~~l~~~GI~I~~V~I~di~~p~~i~~ai~~~~~Aeq~~~a~i~eAe~e~ 247 (414)
+|++|...+++.+++.+.+|||+|++|.|+||+||+++.++|+++++|++++++.+.+|||++
T Consensus 81 ~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~Aere~~A~i~~Aege~ 143 (188)
T 3bk6_A 81 ERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAER 143 (188)
T ss_dssp CHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999999999999999999999998888877766655555543
No 2
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=99.93 E-value=4.5e-26 Score=195.95 Aligned_cols=131 Identities=34% Similarity=0.543 Sum_probs=108.0
Q ss_pred eecCccceEEEeeccceEeeeCCCceeecCCCceEEEEEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHhccchh
Q 038305 101 FLIPFVDRIAYVHSLKEEAIPIPDQSAITKDNVSILIDGVLYVKIVDPKLASYGVENPIYAVIQLAQTTMRSELGKITLD 180 (414)
Q Consensus 101 f~~P~i~~v~~v~~~r~q~~~~~~~~v~TkD~~~v~vd~~v~yrI~dp~~~~~~~~~~~~~i~~~~~~~lR~vi~~~tl~ 180 (414)
+..||++++.++ |+|.++++++.+.++|+|++.|.|+++++|||.||.+|+|++.|++..+..+++++||+++|+++++
T Consensus 3 l~~P~id~v~~v-d~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~Dp~~~~~~v~~~~~~l~~~~~~~lR~vig~~~ld 81 (133)
T 4fvg_A 3 LGSPSTDSAAKV-DMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNALGTKNLS 81 (133)
T ss_dssp -----------C-CCSCEEEEEEEEEEECTTCCEEEEEEEEEEEESCHHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHH
T ss_pred CCCCceeEEEEE-EeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEeehHHhHhhhhhHHHHHHHHHHHHHHHHhccccHH
Confidence 778999999988 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhHHHHHHHHHHHHHHHHhhcCcEEeEEEEeecCCcHHHHHHHHhhHHH
Q 038305 181 KTFEERDTLNEKIVEAINVAARDWGLQCLRYEIRDISPPRGVRAAMEMQAEA 232 (414)
Q Consensus 181 ei~~~R~~l~~~i~~~l~~~l~~~GI~I~~V~I~di~~p~~i~~ai~~~~~A 232 (414)
+++++|+++..++++.+++.+.+|||+|.+|.|+|++||+++.++|.++++|
T Consensus 82 eil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~~~A 133 (133)
T 4fvg_A 82 QILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEAEA 133 (133)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC-----------
T ss_pred HHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999877654
No 3
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.85 E-value=3.9e-22 Score=173.46 Aligned_cols=129 Identities=19% Similarity=0.287 Sum_probs=116.0
Q ss_pred ccceEEEeeccceEeeeCCCceeecCCCceEEEEEEEEEEec-CccccccccC--------CHHHHHHHHHHHHHHHHHh
Q 038305 105 FVDRIAYVHSLKEEAIPIPDQSAITKDNVSILIDGVLYVKIV-DPKLASYGVE--------NPIYAVIQLAQTTMRSELG 175 (414)
Q Consensus 105 ~i~~v~~v~~~r~q~~~~~~~~v~TkD~~~v~vd~~v~yrI~-dp~~~~~~~~--------~~~~~i~~~~~~~lR~vi~ 175 (414)
|++++.++ ++|.++++++.+.++|+|++.|.||++++|||. ||..+.+.+. +....+.++++++||+++|
T Consensus 3 ~i~~v~~v-dlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG 81 (143)
T 1win_A 3 SGSSGQRI-SLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILG 81 (143)
T ss_dssp CCCCCCSC-CCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEE-ECceEEEeCCcceeEcCCCCEEEEEEEEEEEECCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHh
Confidence 57888877 999999999999999999999999999999998 5776544331 2456678889999999999
Q ss_pred ccchhhhHhhHHHHHHHHHHHHHHHHhhcCcEEeEEEEeecCCcHHHHHHHHhhHHHHH
Q 038305 176 KITLDKTFEERDTLNEKIVEAINVAARDWGLQCLRYEIRDISPPRGVRAAMEMQAEAER 234 (414)
Q Consensus 176 ~~tl~ei~~~R~~l~~~i~~~l~~~l~~~GI~I~~V~I~di~~p~~i~~ai~~~~~Aeq 234 (414)
++++++++++|+.|...+.+.+++.+.+|||+|.+|.|+||++|+++.++|++++.|+.
T Consensus 82 ~~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~Ae~ 140 (143)
T 1win_A 82 TLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSGP 140 (143)
T ss_dssp HSCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCCC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999998877654
No 4
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=99.81 E-value=7.2e-20 Score=152.51 Aligned_cols=108 Identities=37% Similarity=0.723 Sum_probs=105.4
Q ss_pred ccceEeeeCCCceeecCCCceEEEEEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHhccchhhhHhhHHHHHHHH
Q 038305 114 SLKEEAIPIPDQSAITKDNVSILIDGVLYVKIVDPKLASYGVENPIYAVIQLAQTTMRSELGKITLDKTFEERDTLNEKI 193 (414)
Q Consensus 114 ~~r~q~~~~~~~~v~TkD~~~v~vd~~v~yrI~dp~~~~~~~~~~~~~i~~~~~~~lR~vi~~~tl~ei~~~R~~l~~~i 193 (414)
++|.++++++.+.++|+|++.|.|+++++|||.||.++++++.+++..+.+.++++||+++|++++++++++|++|.+.+
T Consensus 6 d~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~dp~~~~~~v~~~~~~l~~~~~~~lR~vig~~~l~ei~~~R~~i~~~i 85 (113)
T 2rpb_A 6 DLREHVIDVPPQEVICKDNVVVTVDAVVYYQVIDPVKAVYNVSDFLMAIVKLAQTNLRAIIGEMELDETLSGRDIINARL 85 (113)
T ss_dssp CCCCEEEECCCEEEECTTSCEEEECEEEEEEESCTTTCTTTTTHHHHHHHHHHHHHHHHHHTSCCTTHHHHCHHHHHHHH
T ss_pred eeeEEEEecCcceeEeCCCCEEEEEEEEEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCcHHHHHhCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCcEEeEEEEeecCCcHH
Q 038305 194 VEAINVAARDWGLQCLRYEIRDISPPRG 221 (414)
Q Consensus 194 ~~~l~~~l~~~GI~I~~V~I~di~~p~~ 221 (414)
++.+++.+.+|||+|.+|.|++++||++
T Consensus 86 ~~~l~~~~~~~Gi~v~~v~I~~i~~p~e 113 (113)
T 2rpb_A 86 REELDKITDRWGVKITRVEIQRIDPPKD 113 (113)
T ss_dssp HHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred HHHHHHHHHhcCeEEEEEEEEEecCCCC
Confidence 9999999999999999999999999964
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=98.90 E-value=4.9e-07 Score=95.69 Aligned_cols=153 Identities=11% Similarity=0.156 Sum_probs=102.7
Q ss_pred EEEecCCeEEEEEeC--cEEeEEeCCCceeecCccceEEEe----------eccceEeeeCCC------ceeecCCCceE
Q 038305 74 IRIVPEKKAFVIERF--GKYVKTLPSGIHFLIPFVDRIAYV----------HSLKEEAIPIPD------QSAITKDNVSI 135 (414)
Q Consensus 74 ~~~V~~g~~gVv~r~--Gk~~~~l~pG~hf~~P~i~~v~~v----------~~~r~q~~~~~~------~~v~TkD~~~v 135 (414)
.|.||.+.+.-++.| |+-.-+.||-+.+.-|- +.+..+ +.++...+.+.+ ..|-|+|...+
T Consensus 459 ~~rvphnaaVqvyDy~~~~~RvvfGP~lv~L~Pd-E~ftvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhArL 537 (861)
T 2zuo_A 459 SYRVPHNAAVQVYDYRAKRARVVFGPELVTLDPE-EQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARL 537 (861)
T ss_dssp EEECCTTEEEEEECSSSCCEEEECSSCEEECCSS-CEECCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCCEE
T ss_pred EEEcCCCeEEEEEecCCCceEEEECCcEEEECCC-ccEEEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCceEE
Confidence 467888888888865 55445568887666664 333222 011111222222 24779999999
Q ss_pred EEEEEEEEEec--Cc---c--ccccccCCHHHHHHHHHHHHHHHHHhccchhhhHhhHHHH-HHHHHHH-----------
Q 038305 136 LIDGVLYVKIV--DP---K--LASYGVENPIYAVIQLAQTTMRSELGKITLDKTFEERDTL-NEKIVEA----------- 196 (414)
Q Consensus 136 ~vd~~v~yrI~--dp---~--~~~~~~~~~~~~i~~~~~~~lR~vi~~~tl~ei~~~R~~l-~~~i~~~----------- 196 (414)
.+..+++|+.. |+ . ..+|.+.|+-.-+-..+.+.+|..+++.+++++..+-..| ...++-.
T Consensus 538 ~L~LsYnW~F~~~d~~~~~~~~k~Fsv~DFvGd~Ck~iaSriR~aVA~~~Fd~FHknsa~iir~aVFg~~~~~~~~~~~~ 617 (861)
T 2zuo_A 538 QLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGT 617 (861)
T ss_dssp EEEEEEEEEECCTTTTCHHHHHGGGSSSSHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC----------
T ss_pred EEEEEEEEEEeccCCCChhhhhhhccCCchHHHHHHHHHHHHHHHhhcCcHHHHhhhHHHHHHHhhcCCCcccccccccc
Confidence 99999999874 44 2 4689999999999999999999999999999999654443 3222211
Q ss_pred ----HHH--HHhhcCcEEeEEEEeecCCcH-HHHHHHH
Q 038305 197 ----INV--AARDWGLQCLRYEIRDISPPR-GVRAAME 227 (414)
Q Consensus 197 ----l~~--~l~~~GI~I~~V~I~di~~p~-~i~~ai~ 227 (414)
.++ .+...|+.|.+|.|+++.|-+ ..++++.
T Consensus 618 ~~~~~~~~~~F~~N~lvitsVDvqsvEpvDqrtrd~Lq 655 (861)
T 2zuo_A 618 LLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQ 655 (861)
T ss_dssp ---CCCSCEECTTTCEEEEEEEEEEEEESSHHHHHHHH
T ss_pred cccCcccceEEccCCeEEEEEeeeeecccCHHHHHHHH
Confidence 000 134669999999999998643 4555543
No 6
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=92.15 E-value=3.5 Score=32.36 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 038305 233 ERKKRAQILESEGERQAHINIADGKKTSVILESEAAK 269 (414)
Q Consensus 233 eq~~~a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~a 269 (414)
++.-.+++.+|..+....+..|++++...+.+|++.+
T Consensus 15 E~~L~~~lE~Ar~eA~~~v~~AEAeA~ril~eAe~~a 51 (105)
T 3v6i_B 15 EKQLLERLEAAKKEAEERVKRAEAEAKALLEEAEAKA 51 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666666666666666666555443
No 7
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=81.99 E-value=5.5 Score=31.21 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 038305 231 EAERKKRAQILESEGERQAHINIADGKKTSVIL 263 (414)
Q Consensus 231 ~Aeq~~~a~i~eAe~e~~~~i~~Ae~~a~~~~~ 263 (414)
.|.++..+.+.+||++....+..|+.++...-.
T Consensus 24 ~Ar~eA~~~v~~AEAeA~ril~eAe~~a~~l~a 56 (105)
T 3v6i_B 24 AAKKEAEERVKRAEAEAKALLEEAEAKAKALEA 56 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888888888888888877655433
No 8
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=80.20 E-value=5 Score=32.69 Aligned_cols=48 Identities=15% Similarity=0.130 Sum_probs=28.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 038305 224 AAMEMQAEAERKKRAQILESEGERQAHINIADGKKTSVILESEAAKMD 271 (414)
Q Consensus 224 ~ai~~~~~Aeq~~~a~i~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~ 271 (414)
+.|..-+.||+++...+.+|+.++...+.+|..+|+..+..-.++++.
T Consensus 10 ~GIQqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~qkE~ 57 (119)
T 4efa_G 10 NGIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDK 57 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777666666666666666666665555555444444443
No 9
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=79.22 E-value=11 Score=30.53 Aligned_cols=45 Identities=13% Similarity=0.202 Sum_probs=30.1
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 038305 249 AHINIADGKKTSVILESEAAKMDQVNRAQGEAEAIIAKAQATAKG 293 (414)
Q Consensus 249 ~~i~~Ae~~a~~~~~~AeA~ae~~~~~AegeA~a~~~~a~AeA~a 293 (414)
..+..||.++...+.+|..++...+.+|+.||++-+...+++.+.
T Consensus 13 QqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~qkE~ 57 (119)
T 4efa_G 13 ATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDK 57 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777777777777777777777766666555554
No 10
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=77.41 E-value=6 Score=27.21 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 038305 265 SEAAKMDQVNRAQGEAEAIIAKAQATA 291 (414)
Q Consensus 265 AeA~ae~~~~~AegeA~a~~~~a~AeA 291 (414)
|+.+++..+..|+.+|+.++..++.+|
T Consensus 19 A~~eA~~Il~eA~~eA~~Ii~eA~~~A 45 (52)
T 2kk7_A 19 AKAEANKIISEAEAEKAKILEKAKEEA 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444443
No 11
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=76.22 E-value=31 Score=29.83 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 038305 231 EAERKKRAQILESEGERQAHINIADGKKTSVIL 263 (414)
Q Consensus 231 ~Aeq~~~a~i~eAe~e~~~~i~~Ae~~a~~~~~ 263 (414)
.|+.+.+..+.+|+.+++..+.+|+.+++....
T Consensus 10 eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~ 42 (187)
T 3v6i_A 10 EVEAEIQALLQEAEAKAEAVKREAEEKAKALLQ 42 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666666555443
No 12
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=70.22 E-value=9.6 Score=26.15 Aligned_cols=27 Identities=33% Similarity=0.462 Sum_probs=12.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhHHH
Q 038305 255 DGKKTSVILESEAAKMDQVNRAQGEAE 281 (414)
Q Consensus 255 e~~a~~~~~~AeA~ae~~~~~AegeA~ 281 (414)
+.+++..+.+|+++++..+..|+.+|+
T Consensus 20 ~~eA~~Il~eA~~eA~~Ii~eA~~~Ae 46 (52)
T 2kk7_A 20 KAEANKIISEAEAEKAKILEKAKEEAE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444
No 13
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=70.13 E-value=81 Score=33.88 Aligned_cols=23 Identities=9% Similarity=0.050 Sum_probs=13.5
Q ss_pred cCcEEeEEEEeecCCcHHHHHHH
Q 038305 204 WGLQCLRYEIRDISPPRGVRAAM 226 (414)
Q Consensus 204 ~GI~I~~V~I~di~~p~~i~~ai 226 (414)
..|.|.+|...|..--+.+++++
T Consensus 636 tsVDvqsvEpvDqrtrd~LqkSV 658 (861)
T 2zuo_A 636 SSVDVQSVEPVDQRTRDALQRSV 658 (861)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHH
T ss_pred EEEeeeeecccCHHHHHHHHHHH
Confidence 35666777766666555544444
No 14
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=65.71 E-value=6.2 Score=27.59 Aligned_cols=28 Identities=21% Similarity=0.142 Sum_probs=12.7
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHhhHHH
Q 038305 254 ADGKKTSVILESEAAKMDQVNRAQGEAE 281 (414)
Q Consensus 254 Ae~~a~~~~~~AeA~ae~~~~~AegeA~ 281 (414)
||.++...+.+|+.+++..+..|..+|+
T Consensus 24 AE~~A~~iVeeA~~ea~~ii~eAreeAk 51 (56)
T 2k6i_A 24 AEEQAVKEIEEAKNRAEQIKAEAIEEAK 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443
No 15
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=57.58 E-value=1.5e+02 Score=29.79 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=33.7
Q ss_pred cCcEEeEEEEeecCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 038305 204 WGLQCLRYEIRDISPPRGVRAAMEMQAEAERKKRAQILESEGERQ 248 (414)
Q Consensus 204 ~GI~I~~V~I~di~~p~~i~~ai~~~~~Aeq~~~a~i~eAe~e~~ 248 (414)
-|++-.-|.+.+|-.+.++.+..++...++|+-....-+..++++
T Consensus 278 Sg~ePlYISvs~ilt~~elkqrqeee~r~~qew~~~hp~~~Aer~ 322 (551)
T 2b5u_A 278 SGHNAVYVSVSDVLSPDQVKQRQDEENRRQQEWDATHPVEAAERN 322 (551)
T ss_dssp GCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CCCCceEEEEeecCCHHHHHHHHHHHHHHHHHhhhcCcHHHHHHH
Confidence 389999999999999999999998887777776554333333333
No 16
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=48.49 E-value=1.3e+02 Score=25.74 Aligned_cols=36 Identities=28% Similarity=0.227 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 038305 241 LESEGERQAHINIADGKKTSVILESEAAKMDQVNRA 276 (414)
Q Consensus 241 ~eAe~e~~~~i~~Ae~~a~~~~~~AeA~ae~~~~~A 276 (414)
.+|+.+.+..+.+|+.+++..+.+|++++++....+
T Consensus 9 ~eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~ 44 (187)
T 3v6i_A 9 QEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQAR 44 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666666665555443333
No 17
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=44.74 E-value=37 Score=29.23 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHhhhcCC
Q 038305 264 ESEAAKMDQVNRAQGEAEAIIAKAQATAKGLAMVSQALKENGGLEAASLRVAEQYIQAFGNIAKEGN 330 (414)
Q Consensus 264 ~AeA~ae~~~~~AegeA~a~~~~a~AeA~a~~~~~eal~~~~~~~a~~~~~~~~~~e~l~~ia~~~~ 330 (414)
+||.++++.+.+|+||+++....++|. +. ++. +|.+ +..+|++++.+++.+.+
T Consensus 127 ~Aere~~A~i~~Aege~~a~~~~a~a~----~~----~~~--~~~~----l~lr~le~~~~ia~~~~ 179 (188)
T 3bk6_A 127 EAERERRARITLAEAERQAAEKLREAA----EI----ISE--HPMA----LQLRTLQTISDVAGDKS 179 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HH----HHH--CTTH----HHHHHTTC---------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH----HH----HHh--CHHH----HHHHHHHHHHHHhcCCC
Confidence 455556666777777777665554442 11 222 2433 34479999999987654
No 18
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=38.95 E-value=93 Score=21.37 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=9.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHH
Q 038305 272 QVNRAQGEAEAIIAKAQATAK 292 (414)
Q Consensus 272 ~~~~AegeA~a~~~~a~AeA~ 292 (414)
.+..|+.++++++..+.++.+
T Consensus 29 ~~~~A~~ea~~i~~~A~~eie 49 (61)
T 1l2p_A 29 AKAEAEQERTKIVAQAQAEIE 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555554444433
No 19
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=38.92 E-value=93 Score=21.37 Aligned_cols=20 Identities=40% Similarity=0.444 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhhHHHH
Q 038305 263 LESEAAKMDQVNRAQGEAEA 282 (414)
Q Consensus 263 ~~AeA~ae~~~~~AegeA~a 282 (414)
..|+.+++..+..|+.+.+.
T Consensus 31 ~~A~~ea~~i~~~A~~eie~ 50 (61)
T 1l2p_A 31 AEAEQERTKIVAQAQAEIEA 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 20
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4
Probab=34.00 E-value=2.8e+02 Score=25.46 Aligned_cols=87 Identities=15% Similarity=0.208 Sum_probs=57.3
Q ss_pred eeecCCCceEEEEEEEEEEecC-----ccccccccCCHHHHHHHHHHHHHHHHHhccchhhhHhhHHHHHHHHHHHHHHH
Q 038305 126 SAITKDNVSILIDGVLYVKIVD-----PKLASYGVENPIYAVIQLAQTTMRSELGKITLDKTFEERDTLNEKIVEAINVA 200 (414)
Q Consensus 126 ~v~TkD~~~v~vd~~v~yrI~d-----p~~~~~~~~~~~~~i~~~~~~~lR~vi~~~tl~ei~~~R~~l~~~i~~~l~~~ 200 (414)
+|.|.||..+.|-++..-+-.. -.+..|--......|+....+.+...++.+++.++... -+...+-..+...
T Consensus 129 dVkT~DGY~lRvf~i~fT~kr~~~~~q~kkt~Ya~~SQir~IRkkm~eii~~~~~~~dl~e~V~k--li~~~i~keI~k~ 206 (265)
T 2xzm_4 129 DCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKN--LIGEDYTKKIEKE 206 (265)
T ss_dssp EEEETTTEEEEEEEEEEECCCSSCCSCSSCCBCCTHHHHHHHHHHHHHHHHHHHHTCCHHHHHHH--HHTTHHHHHHHHH
T ss_pred EEEeCCCcEEEEEEEEEEecccccccccceeeeccccchHHHHHHHHHHHHHHhhhCCHHHHHHH--HccchHHHHHHHH
Confidence 4889999999998665443211 12234444456778888999999999999999999843 2445555555555
Q ss_pred HhhcCcEEeEEEEee
Q 038305 201 ARDWGLQCLRYEIRD 215 (414)
Q Consensus 201 l~~~GI~I~~V~I~d 215 (414)
+... +-+.+|.|+.
T Consensus 207 ~k~I-yPL~~V~IrK 220 (265)
T 2xzm_4 207 TKNI-FPLQNITIRK 220 (265)
T ss_dssp HTTT-CCEEEEEEEE
T ss_pred hhhc-cccceEEEEE
Confidence 5542 2344555555
No 21
>2acm_B Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=28.17 E-value=84 Score=21.72 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=15.5
Q ss_pred HHHhhcCcEEeEEEEeecCCcHH
Q 038305 199 VAARDWGLQCLRYEIRDISPPRG 221 (414)
Q Consensus 199 ~~l~~~GI~I~~V~I~di~~p~~ 221 (414)
+...+|.+.|.+|.++|+.+|-.
T Consensus 30 ~a~~~YnL~IS~vsV~dv~FPsS 52 (55)
T 2acm_B 30 EAASRYNLTISDVSVSDVPFPFS 52 (55)
T ss_dssp HHHHHHCCCEEEEEEECC-----
T ss_pred hccccccceecceeEEeccCCCc
Confidence 34558999999999999999854
No 22
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.09 E-value=3.8e+02 Score=23.43 Aligned_cols=79 Identities=14% Similarity=0.128 Sum_probs=53.6
Q ss_pred eeecCCCceEEEEEEEEEEecCccccccccCCHHHHHHHHHHHHHHHHHhccchhhhHhhH--HHHHHHHHHHHHHHHhh
Q 038305 126 SAITKDNVSILIDGVLYVKIVDPKLASYGVENPIYAVIQLAQTTMRSELGKITLDKTFEER--DTLNEKIVEAINVAARD 203 (414)
Q Consensus 126 ~v~TkD~~~v~vd~~v~yrI~dp~~~~~~~~~~~~~i~~~~~~~lR~vi~~~tl~ei~~~R--~~l~~~i~~~l~~~l~~ 203 (414)
++.|.||..+.|-++..-+ + +--......|+....+.+...++..++.++...- +.+..+|....+..
T Consensus 108 dVkT~DGy~lRvf~i~fT~-----k--ra~~sQ~~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~~eI~k~~k~I--- 177 (198)
T 3j20_A 108 NITTKDGYKLRVMAMAIAM-----R--RIQTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKKI--- 177 (198)
T ss_dssp EEECTTSCEEEEEEEEEEC-----S--SCCCTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHSHHHHHHHHHHHHHH---
T ss_pred EEEecCCCEEEEEEEEEEe-----c--cccchhhhHHHHHHHHHHHHHhccCCHHHHHHHHcCChHHHHHHHhhCcc---
Confidence 4889999999998665421 1 1223466788899999999999999999998543 55666555555443
Q ss_pred cCcEEeEEEEeec
Q 038305 204 WGLQCLRYEIRDI 216 (414)
Q Consensus 204 ~GI~I~~V~I~di 216 (414)
.-+.+|.|+.+
T Consensus 178 --yPl~~V~IrKv 188 (198)
T 3j20_A 178 --YPLRKAEIRKI 188 (198)
T ss_dssp --SCEEEEEEEEE
T ss_pred --cccceEEEEEE
Confidence 22335555554
No 23
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_B
Probab=23.07 E-value=1.4e+02 Score=27.28 Aligned_cols=90 Identities=19% Similarity=0.233 Sum_probs=56.2
Q ss_pred ceeecCCCceEEEEEEEEEEecC--ccccccccCCHHHHHHHHHHHHHHHHHhccchhhhHhhHHHHHHHHHHHHHHHHh
Q 038305 125 QSAITKDNVSILIDGVLYVKIVD--PKLASYGVENPIYAVIQLAQTTMRSELGKITLDKTFEERDTLNEKIVEAINVAAR 202 (414)
Q Consensus 125 ~~v~TkD~~~v~vd~~v~yrI~d--p~~~~~~~~~~~~~i~~~~~~~lR~vi~~~tl~ei~~~R~~l~~~i~~~l~~~l~ 202 (414)
.++.|.||..+.|-++..-+-.. -.+..|--......|+....+.+...++..++.++...- +...+-..+...+.
T Consensus 125 vdVkT~DGy~lRvf~i~fT~kr~~q~~kt~YA~~sQi~~IRkkm~eii~~~~~~~dl~e~V~kl--i~~~i~~eI~k~~k 202 (255)
T 3u5c_B 125 VTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKL--IPEVINKEIENATK 202 (255)
T ss_dssp EEEECSSSCEEEECCEEECCCCTTCCSSCCCCCSHHHHHHHHHHHHHHHHHSSSSHHHHHHHHH--TTTHHHHHHHHHHH
T ss_pred EEEEecCCCEEEEEEEEEEcccccccccceechHhHHHHHHHHHHHHHHHHhhhCCHHHHHHHH--cCchHHHHHHHHhc
Confidence 35889999999998665432111 122344445567788999999999999999999998543 23334444444444
Q ss_pred hcCcEEeEEEEeecC
Q 038305 203 DWGLQCLRYEIRDIS 217 (414)
Q Consensus 203 ~~GI~I~~V~I~di~ 217 (414)
.. .-+.+|.|+.+.
T Consensus 203 ~I-yPL~~V~IrKvK 216 (255)
T 3u5c_B 203 DI-FPLQNIHVRKVK 216 (255)
T ss_dssp TT-CCCEEEECCCEE
T ss_pred cc-cccceEEEEEEE
Confidence 32 234455555543
Done!