BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038306
(494 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
Channel
Length = 137
Score = 126 bits (317), Expect = 2e-29, Method: Composition-based stats.
Identities = 62/130 (47%), Positives = 92/130 (70%), Gaps = 12/130 (9%)
Query: 270 LKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRA 329
+++V F+ +DE LDA+C+ +KP F E++++VRE P++EMLF+++G+L + T+
Sbjct: 8 VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67
Query: 330 SGSARFNNHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAF 389
SG F N + LK+GDFCG+EL+ WA+D S SNLP STRT++ALT+VEAF
Sbjct: 68 SG---FYN---------RSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAF 115
Query: 390 ALMADDLKNV 399
AL+AD+LK V
Sbjct: 116 ALIADELKFV 125
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 238 WRETKGVDVENLISNLPRDLRRNIKRELCLDLLKKVEEFKKLDEATLDALCDCVKPAFFI 297
W G+DV L+ + P +LR +I L +LL ++ F+ L +L +K +F
Sbjct: 46 WSVNNGIDVSELLKDFPDELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCA 104
Query: 298 ERAHIVREDYPIDEMLFVVQGKL 320
++R+ + + FV G +
Sbjct: 105 PGEFLIRQGDALQAIYFVCSGSM 127
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 14/112 (12%)
Query: 262 KRELCLDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLW 321
KR++ + L KV + LD+ + D ++P F + IV + P DE +++G
Sbjct: 151 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGS-- 208
Query: 322 NYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSSNL 373
+A +N+ + L D+ GE +A M+ P ++ +
Sbjct: 209 ----------AAVLQRRSENEEFVEVGRLGPSDYFGE--IALLMNRPKAATV 248
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 14/112 (12%)
Query: 262 KRELCLDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLW 321
KR++ + L KV + LD+ + D ++P F + IV + P DE +++G
Sbjct: 147 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGS-- 204
Query: 322 NYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSSNL 373
+A +N+ + L D+ GE +A M+ P ++ +
Sbjct: 205 ----------AAVLQRRSENEEFVEVGRLGPSDYFGE--IALLMNRPRAATV 244
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 14/112 (12%)
Query: 262 KRELCLDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLW 321
KR++ + L KV + LD+ + D ++P F + IV + P DE +++G
Sbjct: 149 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGS-- 206
Query: 322 NYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSSNL 373
+A +N+ + L D+ GE +A M+ P ++ +
Sbjct: 207 ----------AAVLQRRSENEEFVEVGRLGPSDYFGE--IALLMNRPRAATV 246
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 402 NHQLCT---YSELNWKNLMTQAARVIQDAWRRYHTRRNS 437
NH LC S + +L R +W RYHTRRNS
Sbjct: 34 NHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNS 72
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 261 IKRELCLDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKL 320
IK ++ LK V F+ L E L L D ++ + +I+R+ D + +GK+
Sbjct: 150 IKHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKV 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,825,327
Number of Sequences: 62578
Number of extensions: 544964
Number of successful extensions: 1254
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1244
Number of HSP's gapped (non-prelim): 10
length of query: 494
length of database: 14,973,337
effective HSP length: 103
effective length of query: 391
effective length of database: 8,527,803
effective search space: 3334370973
effective search space used: 3334370973
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)