Query 038306
Match_columns 494
No_of_seqs 366 out of 2826
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 09:39:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038306.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038306hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 4.8E-66 1E-70 550.1 36.3 371 12-441 196-576 (727)
2 KOG0500 Cyclic nucleotide-gate 100.0 1.1E-54 2.5E-59 431.7 31.6 338 18-423 99-437 (536)
3 PLN03192 Voltage-dependent pot 100.0 5.3E-51 1.1E-55 458.4 38.5 319 17-410 169-488 (823)
4 KOG0499 Cyclic nucleotide-gate 100.0 1.1E-46 2.4E-51 379.4 22.1 325 19-426 333-658 (815)
5 KOG0501 K+-channel KCNQ [Inorg 100.0 6.9E-47 1.5E-51 379.6 16.0 333 15-400 323-655 (971)
6 PRK09392 ftrB transcriptional 99.6 3.9E-14 8.4E-19 136.8 13.6 153 267-453 6-158 (236)
7 PRK11753 DNA-binding transcrip 99.5 7.1E-13 1.5E-17 125.5 14.5 144 277-453 6-150 (211)
8 PRK11161 fumarate/nitrate redu 99.4 3.1E-12 6.8E-17 123.3 12.7 150 270-454 15-166 (235)
9 PRK10402 DNA-binding transcrip 99.4 4.3E-12 9.3E-17 121.8 11.6 137 283-453 23-160 (226)
10 COG0664 Crp cAMP-binding prote 99.3 2.6E-11 5.6E-16 114.1 13.9 149 272-454 4-153 (214)
11 cd00038 CAP_ED effector domain 99.3 6.7E-11 1.4E-15 99.2 11.5 103 275-399 1-103 (115)
12 PRK09391 fixK transcriptional 99.2 8E-11 1.7E-15 113.3 11.7 132 286-454 33-165 (230)
13 KOG0614 cGMP-dependent protein 99.2 2.3E-11 5E-16 123.6 7.6 116 258-400 144-259 (732)
14 KOG1113 cAMP-dependent protein 99.2 1.6E-11 3.5E-16 119.6 6.3 107 267-400 121-227 (368)
15 PF00027 cNMP_binding: Cyclic 99.2 8E-11 1.7E-15 95.2 8.3 85 293-399 1-85 (91)
16 smart00100 cNMP Cyclic nucleot 99.2 3.1E-10 6.8E-15 95.6 11.7 105 275-399 1-105 (120)
17 PF07885 Ion_trans_2: Ion chan 99.2 2.4E-10 5.1E-15 90.9 10.0 56 142-197 23-78 (79)
18 KOG0614 cGMP-dependent protein 99.1 1.2E-10 2.6E-15 118.5 9.0 117 263-400 267-384 (732)
19 TIGR03697 NtcA_cyano global ni 99.1 3E-10 6.5E-15 105.9 10.7 120 299-453 1-124 (193)
20 KOG3713 Voltage-gated K+ chann 99.1 4.4E-10 9.6E-15 114.5 12.1 60 146-205 380-439 (477)
21 PLN02868 acyl-CoA thioesterase 99.1 1.1E-09 2.4E-14 114.5 13.2 109 267-400 7-115 (413)
22 PRK13918 CRP/FNR family transc 99.1 1E-09 2.2E-14 103.1 11.4 123 290-453 5-130 (202)
23 PF00520 Ion_trans: Ion transp 98.9 1.7E-08 3.6E-13 93.6 11.8 135 11-192 60-200 (200)
24 COG2905 Predicted signal-trans 98.9 1.8E-08 3.8E-13 104.2 12.2 107 267-399 6-112 (610)
25 KOG1545 Voltage-gated shaker-l 98.8 8.5E-10 1.8E-14 107.4 -0.6 46 146-191 396-441 (507)
26 KOG1113 cAMP-dependent protein 98.7 2.1E-08 4.6E-13 98.1 7.5 113 262-400 234-346 (368)
27 KOG1419 Voltage-gated K+ chann 98.6 4.8E-07 1E-11 93.1 12.9 90 139-235 265-354 (654)
28 PRK10537 voltage-gated potassi 98.5 1.6E-06 3.4E-11 89.6 14.4 54 143-196 168-221 (393)
29 KOG1420 Ca2+-activated K+ chan 98.4 1.5E-07 3.2E-12 96.7 4.3 133 141-283 286-425 (1103)
30 KOG3684 Ca2+-activated K+ chan 98.2 3.3E-05 7.2E-10 78.4 14.0 92 140-239 284-375 (489)
31 PF01007 IRK: Inward rectifier 97.9 5.9E-05 1.3E-09 76.1 10.6 58 142-199 83-142 (336)
32 KOG4390 Voltage-gated A-type K 97.9 2.2E-06 4.9E-11 84.5 -0.1 53 146-198 359-415 (632)
33 KOG1418 Tandem pore domain K+ 97.7 3.7E-05 8E-10 80.3 5.3 58 143-200 115-172 (433)
34 KOG2968 Predicted esterase of 97.5 0.00017 3.7E-09 78.5 6.0 100 283-410 500-600 (1158)
35 KOG2968 Predicted esterase of 97.4 0.0021 4.5E-08 70.4 12.6 104 286-410 110-214 (1158)
36 KOG4404 Tandem pore domain K+ 96.7 0.0066 1.4E-07 59.5 8.4 59 144-202 187-253 (350)
37 KOG3827 Inward rectifier K+ ch 96.6 0.011 2.4E-07 59.3 9.1 57 143-199 112-170 (400)
38 KOG4404 Tandem pore domain K+ 96.3 0.00079 1.7E-08 65.7 -1.0 58 137-194 74-131 (350)
39 PRK11832 putative DNA-binding 96.0 0.093 2E-06 49.1 11.5 92 283-400 14-106 (207)
40 PF04831 Popeye: Popeye protei 95.9 0.08 1.7E-06 46.6 10.0 100 279-400 15-116 (153)
41 KOG3542 cAMP-regulated guanine 95.5 0.043 9.4E-07 58.5 7.6 110 264-400 277-388 (1283)
42 KOG1418 Tandem pore domain K+ 95.2 0.0043 9.3E-08 64.6 -0.5 48 142-189 241-296 (433)
43 PLN03223 Polycystin cation cha 91.8 7.3 0.00016 45.8 16.9 28 172-199 1398-1425(1634)
44 KOG3542 cAMP-regulated guanine 91.0 0.34 7.4E-06 51.9 5.2 90 268-392 37-126 (1283)
45 KOG3676 Ca2+-permeable cation 85.7 28 0.0006 38.9 15.4 75 156-231 601-682 (782)
46 KOG3193 K+ channel subunit [In 84.4 0.26 5.6E-06 51.6 -0.5 29 145-173 219-247 (1087)
47 COG4709 Predicted membrane pro 78.3 11 0.00024 34.6 7.7 73 207-281 4-80 (195)
48 PF08006 DUF1700: Protein of u 76.6 16 0.00034 33.5 8.6 57 207-265 4-64 (181)
49 PLN03192 Voltage-dependent pot 72.1 1.9E+02 0.0041 33.3 20.2 43 220-267 357-399 (823)
50 PF07883 Cupin_2: Cupin domain 70.8 5 0.00011 30.0 3.2 44 294-356 3-47 (71)
51 KOG2302 T-type voltage-gated C 67.4 1.3E+02 0.0028 34.9 13.9 21 462-482 1709-1729(1956)
52 PF00520 Ion_trans: Ion transp 66.8 61 0.0013 29.0 10.3 57 136-192 134-195 (200)
53 KOG2302 T-type voltage-gated C 61.5 2.4E+02 0.0051 32.9 14.6 31 167-197 1358-1389(1956)
54 PF00060 Lig_chan: Ligand-gate 59.4 10 0.00022 33.0 3.3 76 139-220 40-115 (148)
55 PF14377 DUF4414: Domain of un 57.6 18 0.00039 30.2 4.4 44 221-264 52-105 (108)
56 KOG2301 Voltage-gated Ca2+ cha 55.5 47 0.001 40.7 8.8 82 144-226 1052-1143(1592)
57 PRK13290 ectC L-ectoine syntha 53.6 50 0.0011 28.4 6.6 69 292-391 38-106 (125)
58 PF13314 DUF4083: Domain of un 52.2 83 0.0018 23.1 6.3 40 176-218 14-56 (58)
59 PF10011 DUF2254: Predicted me 52.1 72 0.0016 32.9 8.7 64 140-203 97-160 (371)
60 PF05899 Cupin_3: Protein of u 51.3 17 0.00036 28.1 3.0 29 310-356 26-54 (74)
61 PF08016 PKD_channel: Polycyst 47.9 2.1E+02 0.0045 30.0 11.6 27 171-197 392-419 (425)
62 KOG0498 K+-channel ERG and rel 43.2 1.7E+02 0.0037 33.0 10.2 44 250-293 370-418 (727)
63 PF07697 7TMR-HDED: 7TM-HD ext 42.3 1.7E+02 0.0037 27.2 9.0 60 250-310 145-207 (222)
64 TIGR03037 anthran_nbaC 3-hydro 40.8 51 0.0011 29.6 4.7 64 303-396 43-106 (159)
65 COG0662 {ManC} Mannose-6-phosp 40.5 52 0.0011 28.2 4.7 36 290-325 37-73 (127)
66 COG1917 Uncharacterized conser 40.4 54 0.0012 28.0 4.9 50 291-359 45-95 (131)
67 PRK13264 3-hydroxyanthranilate 36.0 53 0.0011 30.1 4.1 62 307-397 52-113 (177)
68 KOG1545 Voltage-gated shaker-l 35.8 80 0.0017 32.2 5.6 27 12-39 325-351 (507)
69 PF13623 SurA_N_2: SurA N-term 33.0 1.6E+02 0.0035 25.9 6.7 44 175-218 10-66 (145)
70 PHA02909 hypothetical protein; 32.2 1E+02 0.0022 22.3 4.1 25 49-73 37-61 (72)
71 COG5559 Uncharacterized conser 31.6 47 0.001 24.3 2.4 18 248-265 6-23 (65)
72 PF02037 SAP: SAP domain; Int 29.4 67 0.0014 20.8 2.7 26 209-234 5-35 (35)
73 PF14377 DUF4414: Domain of un 29.2 1.3E+02 0.0029 24.9 5.3 49 221-269 8-69 (108)
74 PHA01757 hypothetical protein 28.7 2.9E+02 0.0063 21.7 6.5 47 167-214 4-50 (98)
75 PRK06771 hypothetical protein; 28.1 3.3E+02 0.0071 22.1 7.5 41 182-222 11-51 (93)
76 KOG4440 NMDA selective glutama 28.0 1.2E+02 0.0027 33.1 5.8 52 146-197 616-667 (993)
77 PHA03029 hypothetical protein; 26.8 3E+02 0.0065 21.2 6.3 38 167-204 2-39 (92)
78 smart00835 Cupin_1 Cupin. This 26.2 1.1E+02 0.0025 26.6 4.6 55 290-357 31-86 (146)
79 TIGR00870 trp transient-recept 26.0 9.9E+02 0.021 27.0 16.4 58 13-72 472-530 (743)
80 KOG3713 Voltage-gated K+ chann 25.4 2.2E+02 0.0048 30.3 7.0 23 186-208 424-446 (477)
81 KOG2568 Predicted membrane pro 25.3 4E+02 0.0087 28.7 9.0 50 146-196 281-330 (518)
82 KOG2301 Voltage-gated Ca2+ cha 25.1 6E+02 0.013 31.7 11.4 13 171-183 636-648 (1592)
83 PF07077 DUF1345: Protein of u 25.0 1.9E+02 0.0042 26.5 6.0 50 141-190 130-179 (180)
84 TIGR00933 2a38 potassium uptak 23.4 96 0.0021 32.2 4.1 43 142-184 230-274 (390)
85 PF14841 FliG_M: FliG middle d 23.2 1E+02 0.0022 24.1 3.2 40 247-294 30-69 (79)
86 COG4325 Predicted membrane pro 21.8 5.2E+02 0.011 26.8 8.5 60 139-200 128-192 (464)
87 cd07313 terB_like_2 tellurium 21.6 4.3E+02 0.0093 21.2 7.4 60 208-267 19-81 (104)
88 COG1615 Uncharacterized conser 21.2 96 0.0021 34.6 3.5 37 153-189 220-256 (885)
89 PF12355 Dscam_C: Down syndrom 20.7 45 0.00098 27.6 0.8 27 456-484 49-75 (124)
90 KOG3609 Receptor-activated Ca2 20.6 9.6E+02 0.021 27.5 11.0 21 53-73 512-532 (822)
91 PRK09108 type III secretion sy 20.6 2.5E+02 0.0055 28.7 6.4 70 164-233 173-242 (353)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=4.8e-66 Score=550.12 Aligned_cols=371 Identities=43% Similarity=0.757 Sum_probs=328.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhhccCCCCC
Q 038306 12 LLKFLVFFQYVPRVIRIYPLFTKATRNSSKLDEATWAKAVFNLLLYLLAAHVFGALWYFFSIERETVCWKSACRKHAGCN 91 (494)
Q Consensus 12 ~l~~~~l~~~l~RLlr~~rl~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~c~ 91 (494)
.+..+.+++||+||+|+.++++.+.+..++..+++|++++++|+++++++||+||+||++|.++...||..+
T Consensus 196 ~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~-------- 267 (727)
T KOG0498|consen 196 ILVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA-------- 267 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc--------
Confidence 455555555599999999999999999999999999998889999999999999999999998888888631
Q ss_pred CcccccCCCCCCcccccccCCCCCCCCCCcccchhhhhhhcCcccCCChHHHHHHHHHHHHHhhccCCCcccccCchhhH
Q 038306 92 HGSFYCDDHSGDYTFLNEFCPIKPQNTKIFDFGIFHDALESGIVEMTDFPQKLLHCFFWGLQSLSCLGQNLNTSTYIWED 171 (494)
Q Consensus 92 ~~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yl~slYwai~t~ttvGyGdi~p~t~~E~ 171 (494)
+|+...+...+.....++||+| +++.+|++|+||+++||||+||||++|+|..|+
T Consensus 268 -------------tw~~~l~~~~~~~~~~~~fg~~------------s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~ 322 (727)
T KOG0498|consen 268 -------------TWLGSLGRLLSCYNLSFTFGIY------------SLALKYVYALYWGLSTLSTVGYGLVHANNMGEK 322 (727)
T ss_pred -------------ccccccccccccCcccccccch------------hHHHHHHHHHHHHhhHhhhccCCccCCCCcHHH
Confidence 6776532111223334667754 566799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHhh
Q 038306 172 FFAILITISGLMLFLFLIGNMQIYLQSKTIRSEEMRLKVREIEQRMPFQKLSGNLQQQIKKYQQYIWRETKGVDVENLIS 251 (494)
Q Consensus 172 ~~~i~~~i~G~~~~ayiig~i~~il~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~ri~~y~~~~~~~~~~~~e~~il~ 251 (494)
+|+|++|++|.++||++||||+++++...++..+|+.++.++++||++++||++||+||++|++|+|..++|+||+++|+
T Consensus 323 iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~ 402 (727)
T KOG0498|consen 323 IFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQ 402 (727)
T ss_pred HHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccHHHHHHHHHHHHHHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCccc
Q 038306 252 NLPRDLRRNIKRELCLDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASG 331 (494)
Q Consensus 252 ~Lp~~Lr~ei~~~l~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~ 331 (494)
+||..||.+|.+++|.++++++|+|+++|+.++.+|+.++++..|+|||+|++|||+.++||||.+|.+++...++|.
T Consensus 403 ~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~-- 480 (727)
T KOG0498|consen 403 SLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGG-- 480 (727)
T ss_pred hCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887652
Q ss_pred ccccccCCCCCccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHH----------h
Q 038306 332 SARFNNHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVF----------I 401 (494)
Q Consensus 332 t~~f~~~~~~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll----------~ 401 (494)
|++ ...+++||+|||.-+++++. .| +++||+|+|.|+++.|+++||..++ +
T Consensus 481 ---~~~---------~~~L~~Gd~~GeEl~~~~~~------~p-~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l 541 (727)
T KOG0498|consen 481 ---FFV---------VAILGPGDFFGEELLTWCLD------LP-QTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFL 541 (727)
T ss_pred ---eEE---------EEEecCCCccchHHHHHHhc------CC-CCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHH
Confidence 333 99999999999443335442 12 3679999999999999999999999 7
Q ss_pred hcccccCChhhhhhhhhhHHHHHHHHHHHHHhhhccchhh
Q 038306 402 NHQLCTYSELNWKNLMTQAARVIQDAWRRYHTRRNSTRST 441 (494)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~rr~~~~~~ 441 (494)
+|.+++|+. +|+ .++.+.+|..|+++.. |......
T Consensus 542 ~~~~r~~s~-~~r---~~aa~~iq~a~r~~~~-~~~~~~l 576 (727)
T KOG0498|consen 542 QHTFRYYSH-LWR---TWAACFIQAAWRRHIK-RKGEEEL 576 (727)
T ss_pred HhHHHHhhh-hhh---hhhhhhHHHHHHHHHH-hhccchh
Confidence 888889998 999 9999999999999988 4433333
No 2
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-54 Score=431.70 Aligned_cols=338 Identities=24% Similarity=0.346 Sum_probs=289.5
Q ss_pred HHHHHHHHHHHhhhHHHHhhhhhhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhHHHHhhhccCCCCCCcccc
Q 038306 18 FFQYVPRVIRIYPLFTKATRNSSKLDEATWAKAVFNLLLYL-LAAHVFGALWYFFSIERETVCWKSACRKHAGCNHGSFY 96 (494)
Q Consensus 18 l~~~l~RLlr~~rl~~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~c~~~~~~ 96 (494)
+.| ++||+|++|++.++.+.+.. +..+++..+.+|+.+. +++||+||+||+|+. +
T Consensus 99 ~~r-~nRllk~yRl~~F~~rTetr-T~~Pn~fri~~lv~~~~ilfHWNaClYf~iS~------~---------------- 154 (536)
T KOG0500|consen 99 LER-LNRLLKIYRLFEFFDRTETR-TTYPNAFRISKLVHYCLILFHWNACLYFLISK------A---------------- 154 (536)
T ss_pred HHH-HHHHHHHHHHHHHHHHhccc-cCCchHHHHHHHHHHHHHHHHHhhHHHHhhhH------h----------------
Confidence 345 89999999999999998864 2334455567777544 779999999999995 1
Q ss_pred cCCCCCCcccccccCCCCCCCCCCcccchhhhhhhcCcccCCChHHHHHHHHHHHHHhhccCCCcccccCchhhHHHHHH
Q 038306 97 CDDHSGDYTFLNEFCPIKPQNTKIFDFGIFHDALESGIVEMTDFPQKLLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAIL 176 (494)
Q Consensus 97 ~~~~~~~~sWi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~ 176 (494)
.|.+.++|++..- .++.|+ .+ ...++.++|+.|+||+..|+||+| -..+|.++.|.+|.|+
T Consensus 155 --~g~~~d~wvY~~i-------~d~~~~---~c------~~~n~~ReY~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~ 215 (536)
T KOG0500|consen 155 --IGFTTDDWVYPKI-------NDPEFA---TC------DAGNLTREYLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIV 215 (536)
T ss_pred --cCccccccccCCc-------cCcccc---cc------chhHHHHHHHHHHHHHhhhhhhcc-CCCCCCcCchhhHHHH
Confidence 1456788997421 111221 11 124688999999999999999999 4568899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHhhhccHH
Q 038306 177 ITISGLMLFLFLIGNMQIYLQSKTIRSEEMRLKVREIEQRMPFQKLSGNLQQQIKKYQQYIWRETKGVDVENLISNLPRD 256 (494)
Q Consensus 177 ~~i~G~~~~ayiig~i~~il~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~ri~~y~~~~~~~~~~~~e~~il~~Lp~~ 256 (494)
-.++|+++||-|+|++++++.+++....+|+++||.+++||+.|++|..|+.||.+||+|.|.+++..||+++++.||+.
T Consensus 216 d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~k 295 (536)
T KOG0500|consen 216 DTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDK 295 (536)
T ss_pred HHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccc
Q 038306 257 LRRNIKRELCLDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFN 336 (494)
Q Consensus 257 Lr~ei~~~l~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~ 336 (494)
|+.+|+.+++.+.|+++++|+++++.++.+++..+++..|.|||+|+++||++++||+|.+|.+++...||+..
T Consensus 296 L~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dDg~t~------ 369 (536)
T KOG0500|consen 296 LKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADDGVTV------ 369 (536)
T ss_pred HHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEecCCcEE------
Confidence 99999999999999999999999999999999999999999999999999999999999999999998776532
Q ss_pred cCCCCCccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhh
Q 038306 337 NHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNL 416 (494)
Q Consensus 337 ~~~~~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~ 416 (494)
...+++|++|||+++++ +.++ .+.++|+++|++++++++++|+|+|+.+. +..||+ +-+.+
T Consensus 370 ----------~~~L~~G~~FGEisIln-i~g~--~~gNRRtanvrSvGYSDlfvLskdDl~~a-----L~eYP~-a~~~L 430 (536)
T KOG0500|consen 370 ----------FVTLKAGSVFGEISILN-IKGN--KNGNRRTANVRSVGYSDLFVLSKDDLWEA-----LSEYPD-ARKRL 430 (536)
T ss_pred ----------EEEecCCceeeeeEEEE-EcCc--ccCCcceeeeeeeccceeeEeeHHHHHHH-----HHhCCH-HHHHH
Confidence 88899999999999854 4443 34457999999999999999999999999 889998 33333
Q ss_pred hhhHHHH
Q 038306 417 MTQAARV 423 (494)
Q Consensus 417 ~~~~~~~ 423 (494)
..-||.+
T Consensus 431 ~~kgr~i 437 (536)
T KOG0500|consen 431 EEKGRQI 437 (536)
T ss_pred HHHHHHH
Confidence 3334433
No 3
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=5.3e-51 Score=458.44 Aligned_cols=319 Identities=21% Similarity=0.287 Sum_probs=268.2
Q ss_pred HHHHHHHHHHHHhhhHHHHhhhhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhHHHHhhhccCCCCCCccc
Q 038306 17 VFFQYVPRVIRIYPLFTKATRNSSKLDEATWAKAVFNLL-LYLLAAHVFGALWYFFSIERETVCWKSACRKHAGCNHGSF 95 (494)
Q Consensus 17 ~l~~~l~RLlr~~rl~~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~c~~~~~ 95 (494)
++++ ++|++|+.|+.+.+.+++..+..+.....+.+++ +.++++||+||+||+++.. +
T Consensus 169 ~~l~-llrl~Rl~ri~~~~~~le~~~~~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~-------------------~- 227 (823)
T PLN03192 169 SLLG-LLRFWRLRRVKQLFTRLEKDIRFSYFWIRCARLLSVTLFLVHCAGCLYYLIADR-------------------Y- 227 (823)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------------c-
Confidence 3344 4455555555555555544332222222344444 5557899999999999931 0
Q ss_pred ccCCCCCCcccccccCCCCCCCCCCcccchhhhhhhcCcccCCChHHHHHHHHHHHHHhhccCCCcccccCchhhHHHHH
Q 038306 96 YCDDHSGDYTFLNEFCPIKPQNTKIFDFGIFHDALESGIVEMTDFPQKLLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAI 175 (494)
Q Consensus 96 ~~~~~~~~~sWi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i 175 (494)
...+++|+..... + ..+.+++.+|++|+|||++|||||||||++|.|..|++|++
T Consensus 228 ----~~~~~~Wi~~~~~---------~------------~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i 282 (823)
T PLN03192 228 ----PHQGKTWIGAVIP---------N------------FRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFII 282 (823)
T ss_pred ----CCCCCchHHHhhh---------c------------cccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHH
Confidence 1234689864111 1 13678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHhhhccH
Q 038306 176 LITISGLMLFLFLIGNMQIYLQSKTIRSEEMRLKVREIEQRMPFQKLSGNLQQQIKKYQQYIWRETKGVDVENLISNLPR 255 (494)
Q Consensus 176 ~~~i~G~~~~ayiig~i~~il~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~ri~~y~~~~~~~~~~~~e~~il~~Lp~ 255 (494)
++|++|+++|||+||+|++++.+.++++.+|+++|+.+++||+++++|+.||.||++|+++.|+.. +.+++++++.||+
T Consensus 283 ~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~~-~~~~~~~l~~Lp~ 361 (823)
T PLN03192 283 FYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKAE-SLNQQQLIDQLPK 361 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc-cccHHHHHHHcCH
Confidence 999999999999999999999999999999999999999999999999999999999999999754 5788999999999
Q ss_pred HHHHHHHHHHHHHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCccccccc
Q 038306 256 DLRRNIKRELCLDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARF 335 (494)
Q Consensus 256 ~Lr~ei~~~l~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f 335 (494)
+||.++..+++.+.++++++|++++++++.+++..++++.|+|||.|+.+||.++++|||.+|.|+++..+++
T Consensus 362 ~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~------- 434 (823)
T PLN03192 362 SICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGE------- 434 (823)
T ss_pred HHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999865443
Q ss_pred ccCCCCCccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCCh
Q 038306 336 NNHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSE 410 (494)
Q Consensus 336 ~~~~~~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~ 410 (494)
++.++..+.+|++|||.+++. . .+++++++|.++|+++.|++++|.++ ++.+|+
T Consensus 435 -------~e~~l~~l~~Gd~FGE~~~l~---~------~p~~~t~ra~~~s~ll~l~~~~f~~l-----l~~~p~ 488 (823)
T PLN03192 435 -------KERVVGTLGCGDIFGEVGALC---C------RPQSFTFRTKTLSQLLRLKTSTLIEA-----MQTRQE 488 (823)
T ss_pred -------cceeeEEccCCCEecchHHhc---C------CCCCCeEEEcccEEEEEEEHHHHHHH-----HHHhhH
Confidence 344588999999999998842 2 23677999999999999999999999 777776
No 4
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-46 Score=379.40 Aligned_cols=325 Identities=18% Similarity=0.316 Sum_probs=284.4
Q ss_pred HHHHHHHHHHhhhHHHHhhhhhhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhHHHHhhhccCCCCCCccccc
Q 038306 19 FQYVPRVIRIYPLFTKATRNSSKLDEATWAKAVFNLLLYL-LAAHVFGALWYFFSIERETVCWKSACRKHAGCNHGSFYC 97 (494)
Q Consensus 19 ~~~l~RLlr~~rl~~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~c~~~~~~~ 97 (494)
+| ++|.+++.-++.+.++++.. ..++|+..+.+-+.|+ +++|..||+||..+- +-
T Consensus 333 wR-~~R~lK~~sF~e~~~~Le~i-~s~~y~~RV~rT~~YmlyilHinacvYY~~Sa--------------------yq-- 388 (815)
T KOG0499|consen 333 WR-ANRMLKYTSFFEFNHHLESI-MSKAYIYRVIRTTGYLLYILHINACVYYWASA--------------------YQ-- 388 (815)
T ss_pred hh-hhhHHHHHHHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHHhhhHHHHHHHHh--------------------hc--
Confidence 45 77777777777667766654 5566777777777666 789999999999883 11
Q ss_pred CCCCCCcccccccCCCCCCCCCCcccchhhhhhhcCcccCCChHHHHHHHHHHHHHhhccCCCcccccCchhhHHHHHHH
Q 038306 98 DDHSGDYTFLNEFCPIKPQNTKIFDFGIFHDALESGIVEMTDFPQKLLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILI 177 (494)
Q Consensus 98 ~~~~~~~sWi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~ 177 (494)
|.+.+-|+++. -...|++|+|||+-|++|+| |...|+|..|++|..+.
T Consensus 389 --glG~~rWVydg-----------------------------~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~ 436 (815)
T KOG0499|consen 389 --GLGTTRWVYDG-----------------------------EGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLN 436 (815)
T ss_pred --ccccceeEEcC-----------------------------CCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHH
Confidence 45778999742 22579999999999999999 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHhhhccHHH
Q 038306 178 TISGLMLFLFLIGNMQIYLQSKTIRSEEMRLKVREIEQRMPFQKLSGNLQQQIKKYQQYIWRETKGVDVENLISNLPRDL 257 (494)
Q Consensus 178 ~i~G~~~~ayiig~i~~il~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~ri~~y~~~~~~~~~~~~e~~il~~Lp~~L 257 (494)
-+.|+++||.+||.|-.++...+..+..|+..||..-.||++.+||+++|.||+.+|+|.|+.++..||.++++.||..|
T Consensus 437 w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~kl 516 (815)
T KOG0499|consen 437 WFMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKL 516 (815)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCccccccccc
Q 038306 258 RRNIKRELCLDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNN 337 (494)
Q Consensus 258 r~ei~~~l~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~ 337 (494)
|.+++..++...+.++.+|++++.+.+..++.+++.+.|.|||+|++.||++++||+|..|+|++....+|
T Consensus 517 q~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~--------- 587 (815)
T KOG0499|consen 517 QLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDG--------- 587 (815)
T ss_pred eeeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999854443
Q ss_pred CCCCCccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhh
Q 038306 338 HRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLM 417 (494)
Q Consensus 338 ~~~~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~ 417 (494)
++++..+.+|++|||++|+. ..+ ..+|+++|+|.++|.+++|+++|+.++ +.+||+ .-+++.
T Consensus 588 ------~~Vl~tL~~GsVFGEISLLa-igG-----~nRRTAnV~a~Gf~nLfvL~KkdLnei-----l~~YP~-sq~iLr 649 (815)
T KOG0499|consen 588 ------TKVLVTLKAGSVFGEISLLA-IGG-----GNRRTANVVAHGFANLFVLDKKDLNEI-----LVHYPD-SQRILR 649 (815)
T ss_pred ------CEEEEEecccceeeeeeeee-ecC-----CCccchhhhhcccceeeEecHhHHHHH-----HHhCcc-HHHHHH
Confidence 34599999999999999852 222 246999999999999999999999999 999998 444444
Q ss_pred hhHHHHHHH
Q 038306 418 TQAARVIQD 426 (494)
Q Consensus 418 ~~~~~~~q~ 426 (494)
..+|.++.+
T Consensus 650 kkAr~llk~ 658 (815)
T KOG0499|consen 650 KKARVLLKQ 658 (815)
T ss_pred HHHHHHHHh
Confidence 555555543
No 5
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.9e-47 Score=379.61 Aligned_cols=333 Identities=18% Similarity=0.280 Sum_probs=280.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhhccCCCCCCcc
Q 038306 15 FLVFFQYVPRVIRIYPLFTKATRNSSKLDEATWAKAVFNLLLYLLAAHVFGALWYFFSIERETVCWKSACRKHAGCNHGS 94 (494)
Q Consensus 15 ~~~l~~~l~RLlr~~rl~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~c~~~~ 94 (494)
++.-++ +.||||+.|+-|++++...+ .-+..++.+..|.+++||+||+||.||..+. .
T Consensus 323 LFSaLK-VVRLLRLGRVaRKLD~YlEY----GAA~LvLLlC~y~lvAHWlACiWysIGd~ev-----------------~ 380 (971)
T KOG0501|consen 323 LFSALK-VVRLLRLGRVARKLDHYLEY----GAAVLVLLLCVYGLVAHWLACIWYSIGDYEV-----------------R 380 (971)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHhheeccchhe-----------------e
Confidence 445556 88999999999999877642 1122233444677999999999999994111 1
Q ss_pred cccCCCCCCcccccccCCCCCCCCCCcccchhhhhhhcCcccCCChHHHHHHHHHHHHHhhccCCCcccccCchhhHHHH
Q 038306 95 FYCDDHSGDYTFLNEFCPIKPQNTKIFDFGIFHDALESGIVEMTDFPQKLLHCFFWGLQSLSCLGQNLNTSTYIWEDFFA 174 (494)
Q Consensus 95 ~~~~~~~~~~sWi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~ 174 (494)
.+-++....++|+.....+ .+.+++|..-..... +..++-...|+.|+||.++.|||||||.|.|.|+.|++|+
T Consensus 381 ~~~~n~i~~dsWL~kLa~~---~~tpY~~~~s~~~~~---~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~ 454 (971)
T KOG0501|consen 381 DEMDNTIQPDSWLWKLAND---IGTPYNYNLSNKGTL---VGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFG 454 (971)
T ss_pred cccccccccchHHHHHHhh---cCCCceeccCCCcee---ecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHH
Confidence 1122245668999876542 445555541111111 1356777899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHhhhcc
Q 038306 175 ILITISGLMLFLFLIGNMQIYLQSKTIRSEEMRLKVREIEQRMPFQKLSGNLQQQIKKYQQYIWRETKGVDVENLISNLP 254 (494)
Q Consensus 175 i~~~i~G~~~~ayiig~i~~il~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~ri~~y~~~~~~~~~~~~e~~il~~Lp 254 (494)
+++|++|+++||-|+|+++.|++++.+.+..|.+.++.+.+||+-..+|+.|.+||..|.--.|...+|+|.+++|...|
T Consensus 455 v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CP 534 (971)
T KOG0501|consen 455 VCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCP 534 (971)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccc
Q 038306 255 RDLRRNIKRELCLDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSAR 334 (494)
Q Consensus 255 ~~Lr~ei~~~l~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~ 334 (494)
.++|.+|..++.++.....|.|+-.|+..++.|+..++.....|||.|++.||..|.++||++|.+++...++.
T Consensus 535 KDMkADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDEV------ 608 (971)
T KOG0501|consen 535 KDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDEV------ 608 (971)
T ss_pred cccccceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCcE------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999865432
Q ss_pred cccCCCCCccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHH
Q 038306 335 FNNHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVF 400 (494)
Q Consensus 335 f~~~~~~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll 400 (494)
+.++++||+||+...- .. ....+.++|+|+++|++..|.|+.+.++|
T Consensus 609 ------------VAILGKGDVFGD~FWK-----~~--t~~qs~ANVRALTYcDLH~IKrd~Ll~VL 655 (971)
T KOG0501|consen 609 ------------VAILGKGDVFGDEFWK-----EN--TLGQSAANVRALTYCDLHMIKRDKLLKVL 655 (971)
T ss_pred ------------EEEeecCccchhHHhh-----hh--hhhhhhhhhhhhhhhhhhHHhHHHHHHHH
Confidence 8999999999998331 11 12346789999999999999999999994
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.56 E-value=3.9e-14 Score=136.76 Aligned_cols=153 Identities=14% Similarity=0.114 Sum_probs=120.1
Q ss_pred HHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCcccc
Q 038306 267 LDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSK 346 (494)
Q Consensus 267 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~ 346 (494)
.+.+..+++|+.++++.++.+....+.+.|++|++|+++|+.++++|||.+|.|+++...+|. +.+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~--------------~~~ 71 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDR--------------ETT 71 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCc--------------eEE
Confidence 457889999999999999999999999999999999999999999999999999999754432 334
Q ss_pred ccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHHHHHH
Q 038306 347 KDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAARVIQD 426 (494)
Q Consensus 347 ~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~~~q~ 426 (494)
+..+.+|++||+.+++ ... ++.++++|+++|+++.|++++|.++ +..+|. +. ......+..
T Consensus 72 i~~~~~g~~~g~~~~~---~~~------~~~~~~~A~~~~~~~~i~~~~~~~l-----~~~~p~--l~---~~~~~~l~~ 132 (236)
T PRK09392 72 LAILRPVSTFILAAVV---LDA------PYLMSARTLTRSRVLMIPAELVREA-----MSEDPG--FM---RAVVFELAG 132 (236)
T ss_pred EEEeCCCchhhhHHHh---CCC------CCceEEEEcCceEEEEEeHHHHHHH-----HHHCHH--HH---HHHHHHHHH
Confidence 8899999999999763 222 3567999999999999999999999 555554 22 222223333
Q ss_pred HHHHHHhhhccchhhhhccchhhhhhh
Q 038306 427 AWRRYHTRRNSTRSTGEIDSSLQVAIS 453 (494)
Q Consensus 427 ~~~~~~~rr~~~~~~~~~e~r~~~~~~ 453 (494)
.+....+ +...+...++++|++..+.
T Consensus 133 ~~~~~~~-~~~~~~~~~~~~Rla~~Ll 158 (236)
T PRK09392 133 CYRGLVK-SLKNQKLRSSAERLANYLL 158 (236)
T ss_pred HHHHHHH-HHHHhhcCCHHHHHHHHHH
Confidence 3444445 5666667788888886553
No 7
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.47 E-value=7.1e-13 Score=125.51 Aligned_cols=144 Identities=11% Similarity=0.174 Sum_probs=110.7
Q ss_pred hcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeec-CCcccccccccCCCCCccccccccCCCCe
Q 038306 277 KKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSK-SRASGSARFNNHRDNDNKSKKDHLKDGDF 355 (494)
Q Consensus 277 ~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~t~~f~~~~~~~~e~~~~~l~~G~~ 355 (494)
+.+|++.++.+...++.+.|++|++|+.+|+.++.+|||.+|.++++..+ +| ++..+..+.+|++
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g--------------~~~~~~~~~~g~~ 71 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEG--------------KEMILSYLNQGDF 71 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCC--------------CEEEEEEcCCCCE
Confidence 46899999999999999999999999999999999999999999999654 33 3344889999999
Q ss_pred echhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHHHHHHHHHHHHhhh
Q 038306 356 CGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAARVIQDAWRRYHTRR 435 (494)
Q Consensus 356 fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~rr 435 (494)
||+.+++ ... +++..+++|.++|+++.|++++|.++ +..+|. +. ..+.+.+.+.. ....+ +
T Consensus 72 ~g~~~~~---~~~-----~~~~~~~~a~~~~~v~~i~~~~~~~l-----~~~~p~--~~--~~~~~~~~~~l-~~~~~-~ 132 (211)
T PRK11753 72 IGELGLF---EEG-----QERSAWVRAKTACEVAEISYKKFRQL-----IQVNPD--IL--MALSAQMARRL-QNTSR-K 132 (211)
T ss_pred Eeehhhc---cCC-----CCceEEEEEcCcEEEEEEcHHHHHHH-----HHHCHH--HH--HHHHHHHHHHH-HHHHH-H
Confidence 9999763 221 13566899999999999999999999 655554 22 02334343333 33344 5
Q ss_pred ccchhhhhccchhhhhhh
Q 038306 436 NSTRSTGEIDSSLQVAIS 453 (494)
Q Consensus 436 ~~~~~~~~~e~r~~~~~~ 453 (494)
...+.+.++++|+++.|-
T Consensus 133 ~~~~~~~~~~~Rl~~~L~ 150 (211)
T PRK11753 133 VGDLAFLDVTGRIAQTLL 150 (211)
T ss_pred HHHHHhcChhhHHHHHHH
Confidence 566777889999886654
No 8
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.39 E-value=3.1e-12 Score=123.33 Aligned_cols=150 Identities=13% Similarity=0.153 Sum_probs=112.2
Q ss_pred hhhchhhhcCcHHHHHHHHhccce-eeecCCCEEEccCCCCCeEEEEEeeEEEEEeec-CCcccccccccCCCCCccccc
Q 038306 270 LKKVEEFKKLDEATLDALCDCVKP-AFFIERAHIVREDYPIDEMLFVVQGKLWNYTSK-SRASGSARFNNHRDNDNKSKK 347 (494)
Q Consensus 270 l~~i~~F~~~s~~~l~~l~~~l~~-~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~t~~f~~~~~~~~e~~~ 347 (494)
+.+.+.|..++++.++.|....+. +.|+||+.|+++||.++++|||.+|.|+++..+ +| ++.++
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G--------------~e~i~ 80 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQG--------------DEQIT 80 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCC--------------CEEEE
Confidence 334444556999999999988864 679999999999999999999999999999764 33 34458
Q ss_pred cccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHHHHHHH
Q 038306 348 DHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAARVIQDA 427 (494)
Q Consensus 348 ~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~~~q~~ 427 (494)
.++.+|++||+.+++ .. ....+++|+++|+++.|++++|.++ +..+|. +. ......+...
T Consensus 81 ~~~~~gd~~g~~~~~---~~-------~~~~~~~a~~~~~i~~ip~~~f~~l-----~~~~p~--~~---~~~~~~~~~~ 140 (235)
T PRK11161 81 GFHLAGDLVGFDAIG---SG-------QHPSFAQALETSMVCEIPFETLDDL-----SGKMPK--LR---QQIMRLMSGE 140 (235)
T ss_pred EeccCCceecccccc---CC-------CCcceEEEeccEEEEEEEHHHHHHH-----HHHChH--HH---HHHHHHHHHH
Confidence 888999999987541 11 1234799999999999999999999 655554 32 2223333334
Q ss_pred HHHHHhhhccchhhhhccchhhhhhhh
Q 038306 428 WRRYHTRRNSTRSTGEIDSSLQVAISQ 454 (494)
Q Consensus 428 ~~~~~~rr~~~~~~~~~e~r~~~~~~~ 454 (494)
.....+ +...+...++++|+++.|-.
T Consensus 141 ~~~~~~-~~~~l~~~~~~~Rla~~L~~ 166 (235)
T PRK11161 141 IKGDQE-MILLLSKKNAEERLAAFIYN 166 (235)
T ss_pred HHHHHH-HHHHHhCCCHHHHHHHHHHH
Confidence 444455 66667778899999988765
No 9
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.36 E-value=4.3e-12 Score=121.77 Aligned_cols=137 Identities=17% Similarity=0.170 Sum_probs=98.2
Q ss_pred HHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeec-CCcccccccccCCCCCccccccccCCCCeechhhh
Q 038306 283 TLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSK-SRASGSARFNNHRDNDNKSKKDHLKDGDFCGEELV 361 (494)
Q Consensus 283 ~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fGe~~l 361 (494)
|...+....+.+.|++|++|+.+||.++++|||.+|.|+++..+ +| ++.++.++.+|++||+.++
T Consensus 23 ~~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G--------------~e~~~~~~~~g~~~G~~~~ 88 (226)
T PRK10402 23 FSFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANG--------------KVSLIDFFAAPCFIGEIEL 88 (226)
T ss_pred CCHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCC--------------CEeeeeecCCCCeEEeehh
Confidence 34467888999999999999999999999999999999999754 33 3445889999999999976
Q ss_pred hhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHHHHHHHHHHHHhhhccchhh
Q 038306 362 AWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAARVIQDAWRRYHTRRNSTRST 441 (494)
Q Consensus 362 ~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~rr~~~~~~ 441 (494)
+ .. .+++.+++|.++|+++.+++++|.++ +...|. -.. .+.+.+.+.... ..+ +......
T Consensus 89 ~---~~------~~~~~~~~A~~~~~i~~i~~~~~~~l-----l~~~p~-~~~---~~~~~l~~~~~~-~~~-~~~~~~~ 148 (226)
T PRK10402 89 I---DK------DHETKAVQAIEECWCLALPMKDCRPL-----LLNDAL-FLR---KLCKFLSHKNYR-NIV-SLTQNQS 148 (226)
T ss_pred h---cC------CCCCccEEEeccEEEEEEEHHHHHHH-----HhcCHH-HHH---HHHHHHHHHHHH-HHH-HHHHhcc
Confidence 3 22 23567999999999999999999998 554554 122 222222222222 222 2222334
Q ss_pred hhccchhhhhhh
Q 038306 442 GEIDSSLQVAIS 453 (494)
Q Consensus 442 ~~~e~r~~~~~~ 453 (494)
.++++|+++.|-
T Consensus 149 ~~~~~Rla~~L~ 160 (226)
T PRK10402 149 FPLENRLAAFIL 160 (226)
T ss_pred ChHHHHHHHHHH
Confidence 478888887664
No 10
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.32 E-value=2.6e-11 Score=114.13 Aligned_cols=149 Identities=17% Similarity=0.182 Sum_probs=111.1
Q ss_pred hchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeec-CCcccccccccCCCCCcccccccc
Q 038306 272 KVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSK-SRASGSARFNNHRDNDNKSKKDHL 350 (494)
Q Consensus 272 ~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~t~~f~~~~~~~~e~~~~~l 350 (494)
..+.|...+++....+....+.+.+++|+.|+.+||+++.+|+|.+|.++++... +| ++.++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G--------------~~~~~~~~ 69 (214)
T COG0664 4 ENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDG--------------REIILGFL 69 (214)
T ss_pred cccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCC--------------cEEEEEEe
Confidence 3456666777777777789999999999999999999999999999999999764 23 34458899
Q ss_pred CCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHHHHHHHHHH
Q 038306 351 KDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAARVIQDAWRR 430 (494)
Q Consensus 351 ~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 430 (494)
.+|++||+.+++. .. +++++++|+++|+++.+++++|.++ +..+|. +. ......+......
T Consensus 70 ~~g~~fg~~~l~~---~~------~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~p~--l~---~~l~~~~~~~l~~ 130 (214)
T COG0664 70 GPGDFFGELALLG---GD------PRSASAVALTDVEVLEIPRKDFLEL-----LAESPK--LA---LALLRLLARRLRQ 130 (214)
T ss_pred cCCchhhhHHHhc---CC------CccceEEEcceEEEEEecHHHHHHH-----HhhCcH--HH---HHHHHHHHHHHHH
Confidence 9999999998742 11 3678999999999999999999998 444333 33 2222233333333
Q ss_pred HHhhhccchhhhhccchhhhhhhh
Q 038306 431 YHTRRNSTRSTGEIDSSLQVAISQ 454 (494)
Q Consensus 431 ~~~rr~~~~~~~~~e~r~~~~~~~ 454 (494)
... +.........++|+++.+..
T Consensus 131 ~~~-~~~~~~~~~~~~r~~~~l~~ 153 (214)
T COG0664 131 ALE-RLSLLARKDVEERLARFLLN 153 (214)
T ss_pred HHH-HHHHHhhccHHHHHHHHHHH
Confidence 344 55556677888898866653
No 11
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.25 E-value=6.7e-11 Score=99.20 Aligned_cols=103 Identities=25% Similarity=0.398 Sum_probs=88.3
Q ss_pred hhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCC
Q 038306 275 EFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGD 354 (494)
Q Consensus 275 ~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~ 354 (494)
+|..++++.+..++..++.+.+.+|++|+.+|+.++++|||.+|.++++..+.+. ++..+..+.+|+
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g-------------~~~~~~~~~~g~ 67 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDG-------------REQIVGFLGPGD 67 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCC-------------cEEEEEecCCcc
Confidence 4778999999999999999999999999999999999999999999998764221 234488899999
Q ss_pred eechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHH
Q 038306 355 FCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNV 399 (494)
Q Consensus 355 ~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~l 399 (494)
+||...++ ... ++..+++|.++|.++.|++++|.++
T Consensus 68 ~~g~~~~~---~~~------~~~~~~~a~~~~~~~~i~~~~~~~~ 103 (115)
T cd00038 68 LFGELALL---GNG------PRSATVRALTDSELLVLPRSDFRRL 103 (115)
T ss_pred CcChHHHh---cCC------CCCceEEEcCceEEEEEeHHHHHHH
Confidence 99999763 111 2456899999999999999999999
No 12
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.22 E-value=8e-11 Score=113.29 Aligned_cols=132 Identities=12% Similarity=0.055 Sum_probs=98.7
Q ss_pred HHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeec-CCcccccccccCCCCCccccccccCCCCeechhhhhhh
Q 038306 286 ALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSK-SRASGSARFNNHRDNDNKSKKDHLKDGDFCGEELVAWA 364 (494)
Q Consensus 286 ~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fGe~~l~~~ 364 (494)
.+....+.+.|++|++|+.+||.++++|||.+|.|+++..+ +| ++.++..+.+|++||+..
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G--------------~e~i~~~~~~Gd~fG~~~---- 94 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDG--------------RRQIGAFHLPGDVFGLES---- 94 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCC--------------cEEEEEEecCCceecccC----
Confidence 45667788999999999999999999999999999999754 33 344588889999999641
Q ss_pred cCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHHHHHHHHHHHHhhhccchhhhhc
Q 038306 365 MDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAARVIQDAWRRYHTRRNSTRSTGEI 444 (494)
Q Consensus 365 l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~rr~~~~~~~~~ 444 (494)
. .++..+++|+++|+++.|++++|.++ +...|. +. ......+........+ +...+...++
T Consensus 95 --~------~~~~~~~~A~~ds~v~~i~~~~f~~l-----~~~~p~--l~---~~l~~~l~~~l~~~~~-~~~~l~~~~~ 155 (230)
T PRK09391 95 --G------STHRFTAEAIVDTTVRLIKRRSLEQA-----AATDVD--VA---RALLSLTAGGLRHAQD-HMLLLGRKTA 155 (230)
T ss_pred --C------CcCCeEEEEcCceEEEEEEHHHHHHH-----HhhChH--HH---HHHHHHHHHHHHHHHH-HHHHHcCCCH
Confidence 1 12457999999999999999999999 555554 33 2222233333344445 6666777889
Q ss_pred cchhhhhhhh
Q 038306 445 DSSLQVAISQ 454 (494)
Q Consensus 445 e~r~~~~~~~ 454 (494)
++|++..|..
T Consensus 156 ~~Rla~~Ll~ 165 (230)
T PRK09391 156 MERVAAFLLE 165 (230)
T ss_pred HHHHHHHHHH
Confidence 9999877753
No 13
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.21 E-value=2.3e-11 Score=123.57 Aligned_cols=116 Identities=22% Similarity=0.356 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCccccccccc
Q 038306 258 RRNIKRELCLDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNN 337 (494)
Q Consensus 258 r~ei~~~l~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~ 337 (494)
|..-..++..+.+.+..|+++++.+.+++++.+|.+..|.+|.+|+++||+++++|.+.+|.+++... |+
T Consensus 144 Kd~~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~--g~-------- 213 (732)
T KOG0614|consen 144 KDVGAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSRE--GK-------- 213 (732)
T ss_pred CCccHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEeeC--Ce--------
Confidence 33345566688888899999999999999999999999999999999999999999999999999853 22
Q ss_pred CCCCCccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHH
Q 038306 338 HRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVF 400 (494)
Q Consensus 338 ~~~~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll 400 (494)
.+..+++|..|||.++++.. .|+++|+|+++|.+|.|+|+-|+.++
T Consensus 214 --------ll~~m~~gtvFGELAILync---------tRtAsV~alt~~~lWaidR~vFq~IM 259 (732)
T KOG0614|consen 214 --------LLGKMGAGTVFGELAILYNC---------TRTASVRALTDVRLWAIDREVFQAIM 259 (732)
T ss_pred --------eeeccCCchhhhHHHHHhCC---------cchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 28899999999999997532 38999999999999999999999998
No 14
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.21 E-value=1.6e-11 Score=119.60 Aligned_cols=107 Identities=15% Similarity=0.209 Sum_probs=96.2
Q ss_pred HHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCcccc
Q 038306 267 LDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSK 346 (494)
Q Consensus 267 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~ 346 (494)
.+.+.+.-+|.+++++.+.+++..|.++.++.|+.|+++|+.++.+|+|.+|.+++|..+. .
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~~~---~--------------- 182 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVNGT---Y--------------- 182 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEECCe---E---------------
Confidence 4566777899999999999999999999999999999999999999999999999997521 1
Q ss_pred ccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHH
Q 038306 347 KDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVF 400 (494)
Q Consensus 347 ~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll 400 (494)
+..+.+|+.|||.+|++ .+||.+|+.|.+++.+|.|++..|..++
T Consensus 183 v~~~~~g~sFGElALmy---------n~PRaATv~a~t~~klWgldr~SFrrIi 227 (368)
T KOG1113|consen 183 VTTYSPGGSFGELALMY---------NPPRAATVVAKSLKKLWGLDRTSFRRII 227 (368)
T ss_pred EeeeCCCCchhhhHhhh---------CCCcccceeeccccceEEEeeceeEEEe
Confidence 78899999999999964 2468999999999999999999999885
No 15
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.18 E-value=8e-11 Score=95.17 Aligned_cols=85 Identities=20% Similarity=0.235 Sum_probs=72.1
Q ss_pred eeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCeechhhhhhhcCCCCCCC
Q 038306 293 PAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSSN 372 (494)
Q Consensus 293 ~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~ 372 (494)
.+.|++|++|+++|+.++++|||.+|.++++..+.+. ++.++..+.+|++||+.+++. ..
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~-------------~~~~~~~~~~g~~~g~~~~~~---~~---- 60 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDG-------------KEQIIFFLGPGDIFGEIELLT---GK---- 60 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTS-------------EEEEEEEEETTEEESGHHHHH---TS----
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceecc-------------eeeeecceeeeccccceeecC---CC----
Confidence 3679999999999999999999999999999876432 223478899999999998853 11
Q ss_pred CCCcccEEEEcceEEEEEeCHHHHHHH
Q 038306 373 LPISTRTIQALTKVEAFALMADDLKNV 399 (494)
Q Consensus 373 ~~~r~~tv~A~~~~~l~~is~~df~~l 399 (494)
++..+++|.++|+++.|++++|.++
T Consensus 61 --~~~~~~~a~~~~~~~~i~~~~~~~~ 85 (91)
T PF00027_consen 61 --PSPFTVIALTDSEVLRIPREDFLQL 85 (91)
T ss_dssp --BBSSEEEESSSEEEEEEEHHHHHHH
T ss_pred --ccEEEEEEccCEEEEEEeHHHHHHH
Confidence 3667999999999999999999999
No 16
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.17 E-value=3.1e-10 Score=95.59 Aligned_cols=105 Identities=22% Similarity=0.302 Sum_probs=88.3
Q ss_pred hhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCC
Q 038306 275 EFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGD 354 (494)
Q Consensus 275 ~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~ 354 (494)
+|.+++++.++.++..++.+.+++|++|+++|+.++++|||.+|.++++..+.+. ++..+..+.+|+
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g-------------~~~~~~~~~~g~ 67 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDG-------------REQILGILGPGD 67 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCC-------------ceEEEEeecCCc
Confidence 4778999999999999999999999999999999999999999999999764211 234488999999
Q ss_pred eechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHH
Q 038306 355 FCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNV 399 (494)
Q Consensus 355 ~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~l 399 (494)
+||+..++. ... .+...+++|.++|+++.++.+++...
T Consensus 68 ~~g~~~~~~--~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~ 105 (120)
T smart00100 68 FFGELALLT--NSR-----RAASATAVALELATLLRIDFRDFLQL 105 (120)
T ss_pred eechhhhcc--CCC-----cccceEEEEEeeEEEEccCHHHHHHH
Confidence 999997631 111 13556899999999999999999988
No 17
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.16 E-value=2.4e-10 Score=90.86 Aligned_cols=56 Identities=13% Similarity=0.335 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038306 142 QKLLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQIYLQ 197 (494)
Q Consensus 142 ~~Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il~ 197 (494)
..|..|+||+++|+||+||||+.|.+...++++++.+++|..++++.++.+++.+.
T Consensus 23 ~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 23 WSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp TSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34678999999999999999999999999999999999999999999999998875
No 18
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.14 E-value=1.2e-10 Score=118.48 Aligned_cols=117 Identities=21% Similarity=0.352 Sum_probs=103.0
Q ss_pred HHHHHHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCC
Q 038306 263 RELCLDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDND 342 (494)
Q Consensus 263 ~~l~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~ 342 (494)
..-++++|+++|+|+++|++.+..++..++...|..|++|+++|+.++.+|+|.+|.|.+...+.+. .
T Consensus 267 ~~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~------------~ 334 (732)
T KOG0614|consen 267 HEQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGS------------T 334 (732)
T ss_pred HHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCC------------C
Confidence 4456789999999999999999999999999999999999999999999999999999998765442 2
Q ss_pred ccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcce-EEEEEeCHHHHHHHH
Q 038306 343 NKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTK-VEAFALMADDLKNVF 400 (494)
Q Consensus 343 ~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~-~~l~~is~~df~~ll 400 (494)
++..+..+..||+|||-+|+. + ..|++++.|..+ ++++.|+++.|.+++
T Consensus 335 q~~~lr~l~kGd~FGE~al~~--e-------dvRtAniia~~~gv~cl~lDresF~~li 384 (732)
T KOG0614|consen 335 QPQELRTLNKGDYFGERALLG--E-------DVRTANIIAQAPGVECLTLDRESFKKLI 384 (732)
T ss_pred chhHHhhccccchhhHHHhhc--c-------CccchhhhccCCCceEEEecHHHHHHhc
Confidence 455699999999999998852 2 248899999888 999999999999986
No 19
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.13 E-value=3e-10 Score=105.87 Aligned_cols=120 Identities=14% Similarity=0.114 Sum_probs=88.8
Q ss_pred CCEEEccCCCCCeEEEEEeeEEEEEeec-CCcccccccccCCCCCccccccccCCCCeechhhhhhhcCCCCCCCCCCcc
Q 038306 299 RAHIVREDYPIDEMLFVVQGKLWNYTSK-SRASGSARFNNHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPIST 377 (494)
Q Consensus 299 ge~I~~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~ 377 (494)
|+.|+++||.++++|+|.+|.|+++..+ +| ++.++..+.+|++||+.+++ ...+ .++.
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G--------------~e~~l~~~~~g~~~G~~~~~---~~~~----~~~~ 59 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESG--------------EEITVALLRENSVFGVLSLI---TGHR----SDRF 59 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCC--------------cEeeeEEccCCCEeeeeeec---cCCC----Cccc
Confidence 7899999999999999999999999754 33 34458999999999998763 2221 1234
Q ss_pred cEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHHHHHHHHHH---HHhhhccchhhhhccchhhhhhh
Q 038306 378 RTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAARVIQDAWRR---YHTRRNSTRSTGEIDSSLQVAIS 453 (494)
Q Consensus 378 ~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~---~~~rr~~~~~~~~~e~r~~~~~~ 453 (494)
.+++|.++|+++.+++++|.++ +..+|. +.+.+++....+ ... +...+...++++|+++.|-
T Consensus 60 ~~~~A~~~~~v~~i~~~~~~~l-----~~~~p~--------l~~~~~~~l~~~l~~~~~-~~~~l~~~~~~~Rla~~L~ 124 (193)
T TIGR03697 60 YHAVAFTRVELLAVPIEQVEKA-----IEEDPD--------LSMLLLQGLSSRILQTEM-MIETLAHRDMGSRLVSFLL 124 (193)
T ss_pred eEEEEecceEEEEeeHHHHHHH-----HHHChH--------HHHHHHHHHHHHHHHHHH-HHHHHHhCCHHHHHHHHHH
Confidence 5799999999999999999999 666665 233333333333 333 5556677889999997654
No 20
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.12 E-value=4.4e-10 Score=114.52 Aligned_cols=60 Identities=12% Similarity=0.237 Sum_probs=51.0
Q ss_pred HHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 038306 146 HCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQIYLQSKTIRSEE 205 (494)
Q Consensus 146 ~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~~~~~~~~ 205 (494)
.+++||+.|||||||||++|.|..-++++..+.+.|+++.|+=|..|.+=+....+..++
T Consensus 380 a~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~ 439 (477)
T KOG3713|consen 380 AGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKA 439 (477)
T ss_pred chhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999776666655544444433
No 21
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.07 E-value=1.1e-09 Score=114.53 Aligned_cols=109 Identities=17% Similarity=0.284 Sum_probs=93.7
Q ss_pred HHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCcccc
Q 038306 267 LDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSK 346 (494)
Q Consensus 267 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~ 346 (494)
.+.+.++++|++++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+++. +.+
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~g--------------e~~ 72 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEE--------------SRP 72 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCC--------------cEE
Confidence 456788999999999999999999999999999999999999999999999999999765321 233
Q ss_pred ccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHH
Q 038306 347 KDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVF 400 (494)
Q Consensus 347 ~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll 400 (494)
+..+.+|++||+. + .. .++.++++|.++|+++.|++++|..+.
T Consensus 73 l~~l~~Gd~fG~~-l----~~------~~~~~~~~A~~d~~v~~ip~~~~~~~~ 115 (413)
T PLN02868 73 EFLLKRYDYFGYG-L----SG------SVHSADVVAVSELTCLVLPHEHCHLLS 115 (413)
T ss_pred EEEeCCCCEeehh-h----CC------CCcccEEEECCCEEEEEEcHHHHhhhc
Confidence 7888999999975 3 21 236679999999999999999999774
No 22
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.07 E-value=1e-09 Score=103.11 Aligned_cols=123 Identities=16% Similarity=0.129 Sum_probs=87.2
Q ss_pred ccceeeecCCCEEEccCC--CCCeEEEEEeeEEEEEeec-CCcccccccccCCCCCccccccccCCCCeechhhhhhhcC
Q 038306 290 CVKPAFFIERAHIVREDY--PIDEMLFVVQGKLWNYTSK-SRASGSARFNNHRDNDNKSKKDHLKDGDFCGEELVAWAMD 366 (494)
Q Consensus 290 ~l~~~~~~~ge~I~~~Ge--~~~~lyfI~~G~v~v~~~~-~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fGe~~l~~~l~ 366 (494)
.++.+.|++|++|+++|| .++.+|+|.+|.|+++..+ +| ++.++..+.+|++||+.+++ .
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G--------------~e~~l~~~~~Gd~~G~~~~~---~ 67 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEG--------------NALTLRYVRPGEYFGEEALA---G 67 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCC--------------CEEEEEEecCCCeechHHhc---C
Confidence 467889999999999999 7799999999999999764 33 44558999999999997542 1
Q ss_pred CCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHHHHHHHHHHHHhhhccchhhhhccc
Q 038306 367 DPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAARVIQDAWRRYHTRRNSTRSTGEIDS 446 (494)
Q Consensus 367 ~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~rr~~~~~~~~~e~ 446 (494)
+ +++.+++|.++|+++.|++++|. +. .+. .+.+.+.+.... ..+ +...+....+++
T Consensus 68 -~------~~~~~~~A~~~~~v~~i~~~~~~-----------~~-~~~---~l~~~l~~~~~~-~~~-~~~~l~~~~~~~ 123 (202)
T PRK13918 68 -A------ERAYFAEAVTDSRIDVLNPALMS-----------AE-DNL---VLTQHLVRTLAR-AYE-SIYRLVGQRLKN 123 (202)
T ss_pred -C------CCCceEEEcCceEEEEEEHHHcC-----------hh-hHH---HHHHHHHHHHHH-HHH-HHHHHHhCchHH
Confidence 1 24568999999999999998762 11 111 222222222111 122 444556677889
Q ss_pred hhhhhhh
Q 038306 447 SLQVAIS 453 (494)
Q Consensus 447 r~~~~~~ 453 (494)
|+++.|-
T Consensus 124 Rla~~Ll 130 (202)
T PRK13918 124 RIAAALL 130 (202)
T ss_pred HHHHHHH
Confidence 9997764
No 23
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=98.88 E-value=1.7e-08 Score=93.65 Aligned_cols=135 Identities=17% Similarity=0.245 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhhccCCCC
Q 038306 11 KLLKFLVFFQYVPRVIRIYPLFTKATRNSSKLDEATWAKAVFNLLLYLLAAHVFGALWYFFSIERETVCWKSACRKHAGC 90 (494)
Q Consensus 11 ~~l~~~~l~~~l~RLlr~~rl~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~c 90 (494)
..+++++++| +.|++|+.|..+.+++....+. .........+++++++.|+.||+++.+.......|+.
T Consensus 60 ~~~~~~~~l~-~~R~l~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~--------- 128 (200)
T PF00520_consen 60 SLLRIFRLLR-LLRLLRLLRRFRSLRRLLRALI-RSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCD--------- 128 (200)
T ss_dssp HCHHHHHHHH-HHHHHHHHHTTTSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS--------------
T ss_pred ceEEEEEeec-cccccccccccccccccccccc-cccccccccccccccccccccchhheecccccccccc---------
Confidence 3556666666 6666666666666665543322 2222333344456678999999999988422111100
Q ss_pred CCcccccCCCCCCcccccccCCCCCCCCCCcccchhhhhhhcCcccCCChHHHHHHHHHHHHHhhccCCCcccccC----
Q 038306 91 NHGSFYCDDHSGDYTFLNEFCPIKPQNTKIFDFGIFHDALESGIVEMTDFPQKLLHCFFWGLQSLSCLGQNLNTST---- 166 (494)
Q Consensus 91 ~~~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yl~slYwai~t~ttvGyGdi~p~---- 166 (494)
..+....+ ....+..+.|..|+||++.++|+.|+||+.+.
T Consensus 129 -------------~~~~~~~~-----------------------~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~ 172 (200)
T PF00520_consen 129 -------------PTWDSEND-----------------------IYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSA 172 (200)
T ss_dssp ---------------SS---------------------------SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHT
T ss_pred -------------cccccccc-----------------------cccccccccccccccccccccccCCccccccccccc
Confidence 00000000 01335667799999999999999999999887
Q ss_pred -chhhHHHH-HHHHHHHHHHHHHHHHHH
Q 038306 167 -YIWEDFFA-ILITISGLMLFLFLIGNM 192 (494)
Q Consensus 167 -t~~E~~~~-i~~~i~G~~~~ayiig~i 192 (494)
+..+.++. +++.+++.++++.++|.|
T Consensus 173 ~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 173 RSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 88999998 666666668888888865
No 24
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.87 E-value=1.8e-08 Score=104.22 Aligned_cols=107 Identities=15% Similarity=0.221 Sum_probs=93.8
Q ss_pred HHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCcccc
Q 038306 267 LDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSK 346 (494)
Q Consensus 267 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~ 346 (494)
.+++.++|.|..++++.+.+|...++...|.+||.|+..|.+...+|+|.+|.|+++..+|. .
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g~--v--------------- 68 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGGE--V--------------- 68 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCCe--e---------------
Confidence 56788999999999999999999999999999999999999999999999999999976543 2
Q ss_pred ccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHH
Q 038306 347 KDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNV 399 (494)
Q Consensus 347 ~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~l 399 (494)
+..+.+|+.||-.+++. ..+ ......|.+|+-+|.|+++.|.++
T Consensus 69 ~~~~~~gdlFg~~~l~~---~~~------~~~~~~aeedsl~y~lp~s~F~ql 112 (610)
T COG2905 69 LDRLAAGDLFGFSSLFT---ELN------KQRYMAAEEDSLCYLLPKSVFMQL 112 (610)
T ss_pred eeeeccCccccchhhcc---cCC------CcceeEeeccceEEecCHHHHHHH
Confidence 88999999999998842 221 123678888999999999999999
No 25
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=98.78 E-value=8.5e-10 Score=107.39 Aligned_cols=46 Identities=13% Similarity=0.343 Sum_probs=41.3
Q ss_pred HHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHH
Q 038306 146 HCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGN 191 (494)
Q Consensus 146 ~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~ 191 (494)
.||+||++|||||||||..|.|..-+++..++.+.|++-.|.=+..
T Consensus 396 daFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPV 441 (507)
T KOG1545|consen 396 DAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPV 441 (507)
T ss_pred ccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccE
Confidence 5899999999999999999999999999999999999877765443
No 26
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.74 E-value=2.1e-08 Score=98.14 Aligned_cols=113 Identities=14% Similarity=0.223 Sum_probs=100.0
Q ss_pred HHHHHHHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCC
Q 038306 262 KRELCLDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDN 341 (494)
Q Consensus 262 ~~~l~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~ 341 (494)
...+|.+.|.++|++..+.......++..+.++.|.+|+.|..+|+.++.+|+|.+|.|.+....+| .
T Consensus 234 krkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~--v---------- 301 (368)
T KOG1113|consen 234 KRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG--V---------- 301 (368)
T ss_pred hhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCC--e----------
Confidence 5668899999999999999999999999999999999999999999999999999999988754333 1
Q ss_pred CccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHH
Q 038306 342 DNKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVF 400 (494)
Q Consensus 342 ~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll 400 (494)
...+..|++|||.+++.+ .+|.+++.|.+...+..++++.|+.|+
T Consensus 302 -----~vkl~~~dyfge~al~~~---------~pr~Atv~a~~~~kc~~~dk~~ferll 346 (368)
T KOG1113|consen 302 -----EVKLKKGDYFGELALLKN---------LPRAATVVAKGRLKCAKLDKPRFERLL 346 (368)
T ss_pred -----EEEechhhhcchHHHHhh---------chhhceeeccCCceeeeeChHHHHHHh
Confidence 338999999999998642 247889999999999999999999995
No 27
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.60 E-value=4.8e-07 Score=93.06 Aligned_cols=90 Identities=16% Similarity=0.211 Sum_probs=68.2
Q ss_pred ChHHHHHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcc
Q 038306 139 DFPQKLLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQIYLQSKTIRSEEMRLKVREIEQRMP 218 (494)
Q Consensus 139 ~~~~~Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~~~~~~~~~~~~~~~i~~~m~ 218 (494)
+-+.-|-.|++|.+.|+|||||||.+|+|..-++++.++.++|+.+||.--|-+++=+.-+-+++ ..=++|-+
T Consensus 265 ~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQeq-------~RQKHf~r 337 (654)
T KOG1419|consen 265 DEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQEQ-------HRQKHFNR 337 (654)
T ss_pred ccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHHH-------HHHHHHHh
Confidence 34578999999999999999999999999999999999999999999987666666443222111 11235556
Q ss_pred CCCCCHHHHHHHHHHHH
Q 038306 219 FQKLSGNLQQQIKKYQQ 235 (494)
Q Consensus 219 ~~~lp~~L~~ri~~y~~ 235 (494)
.++.-..|.+-.-+||-
T Consensus 338 rr~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 338 RRNPAASLIQCAWRYYA 354 (654)
T ss_pred hcchHHHHHHHHHHHHh
Confidence 66666777766666664
No 28
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.52 E-value=1.6e-06 Score=89.62 Aligned_cols=54 Identities=19% Similarity=0.275 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038306 143 KLLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQIYL 196 (494)
Q Consensus 143 ~Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il 196 (494)
.+..|+||++.|+|||||||+.|.+...++|+++++++|+.+|++.++.+...+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999999999887644
No 29
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.44 E-value=1.5e-07 Score=96.67 Aligned_cols=133 Identities=13% Similarity=0.234 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCC
Q 038306 141 PQKLLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQIYLQSKTIRSEEMRLKVREIEQRMPFQ 220 (494)
Q Consensus 141 ~~~Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~~~~~~~~~~~~~~~i~~~m~~~ 220 (494)
.--|..|+|+.++||+||||||+...|...+.|.++.++.|..+||-.+..+..++.+.++-.-+|+..- .++
T Consensus 286 rltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~eh-------gkk 358 (1103)
T KOG1420|consen 286 RLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEH-------GKK 358 (1103)
T ss_pred cchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhc-------CCe
Confidence 3568899999999999999999999999999999999999999999999999999987765444443211 111
Q ss_pred CC---CHHHHHHHHHHHHHHHHh-hcCCC-HHHHhhhccHHHHHHHHHHHHHHHhhhchhhhc--CcHHH
Q 038306 221 KL---SGNLQQQIKKYQQYIWRE-TKGVD-VENLISNLPRDLRRNIKRELCLDLLKKVEEFKK--LDEAT 283 (494)
Q Consensus 221 ~l---p~~L~~ri~~y~~~~~~~-~~~~~-e~~il~~Lp~~Lr~ei~~~l~~~~l~~i~~F~~--~s~~~ 283 (494)
++ ..-..+.|..|++-..++ ...++ |--++...||+|--| .++.....++++|++ +++-.
T Consensus 359 hivvcghityesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqgtvmnp~d 425 (1103)
T KOG1420|consen 359 HIVVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQGTVMNPHD 425 (1103)
T ss_pred eEEEecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecccccChhh
Confidence 11 112344555565543333 33344 334788999988655 355666777888886 44433
No 30
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=98.17 E-value=3.3e-05 Score=78.39 Aligned_cols=92 Identities=13% Similarity=0.100 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccC
Q 038306 140 FPQKLLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQIYLQSKTIRSEEMRLKVREIEQRMPF 219 (494)
Q Consensus 140 ~~~~Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~~~~~~~~~~~~~~~i~~~m~~ 219 (494)
...-|+.|++....|..++||||++|.|..-+..+++.-++|+.+.|.+++.++.=+. ...--+.+++||-+
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKLe--------Lt~aEKhVhNFMmD 355 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKLE--------LTKAEKHVHNFMMD 355 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 5567999999999999999999999999999999999999999999999988876554 33334578888888
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 038306 220 QKLSGNLQQQIKKYQQYIWR 239 (494)
Q Consensus 220 ~~lp~~L~~ri~~y~~~~~~ 239 (494)
.++.+++++-..+=++..|.
T Consensus 356 tqLTk~~KnAAA~VLqeTW~ 375 (489)
T KOG3684|consen 356 TQLTKEHKNAAANVLQETWL 375 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888877776666664
No 31
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.93 E-value=5.9e-05 Score=76.14 Aligned_cols=58 Identities=16% Similarity=0.342 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhhccCCCcc--cccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038306 142 QKLLHCFFWGLQSLSCLGQNL--NTSTYIWEDFFAILITISGLMLFLFLIGNMQIYLQSK 199 (494)
Q Consensus 142 ~~Yl~slYwai~t~ttvGyGd--i~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~~ 199 (494)
..+..+|+|++.|+||||||. ++|....-.++.++=+++|.++.|+++|.+-+=++.-
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP 142 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRP 142 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 467899999999999999998 6777777778888889999999999999887766543
No 32
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=97.91 E-value=2.2e-06 Score=84.55 Aligned_cols=53 Identities=15% Similarity=0.397 Sum_probs=47.3
Q ss_pred HHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHh
Q 038306 146 HCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLF----LIGNMQIYLQS 198 (494)
Q Consensus 146 ~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ay----iig~i~~il~~ 198 (494)
.+|+|.++||||.||||.+|.|...++|..++.+.|+++.|. |+++.+.|..+
T Consensus 359 aaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYHQ 415 (632)
T KOG4390|consen 359 AAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQ 415 (632)
T ss_pred HhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHHhh
Confidence 789999999999999999999999999999999999998886 55777777654
No 33
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.72 E-value=3.7e-05 Score=80.25 Aligned_cols=58 Identities=14% Similarity=0.348 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038306 143 KLLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQIYLQSKT 200 (494)
Q Consensus 143 ~Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~~~ 200 (494)
-+..|+||+++++||+|||++.|.|...++++|+..++|+=++..+++.++..+...-
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~ 172 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSL 172 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999999999887543
No 34
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.46 E-value=0.00017 Score=78.46 Aligned_cols=100 Identities=17% Similarity=0.159 Sum_probs=82.9
Q ss_pred HHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeec-CCcccccccccCCCCCccccccccCCCCeechhhh
Q 038306 283 TLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSK-SRASGSARFNNHRDNDNKSKKDHLKDGDFCGEELV 361 (494)
Q Consensus 283 ~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fGe~~l 361 (494)
++..+-..+.-....+|+.++++||.+|.+|+|.+|.++..... +++ ..++..++.||.+|+...
T Consensus 500 ~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k--------------~~i~~EygrGd~iG~~E~ 565 (1158)
T KOG2968|consen 500 FLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGK--------------KEIVGEYGRGDLIGEVEM 565 (1158)
T ss_pred HHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCcc--------------chhhhhccCcceeehhHH
Confidence 45666677788899999999999999999999999999988653 332 234889999999999976
Q ss_pred hhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCCh
Q 038306 362 AWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSE 410 (494)
Q Consensus 362 ~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~ 410 (494)
+ ..+ +|..|+.|+-++++.+|+..-|..+ ...||+
T Consensus 566 l---t~~------~R~tTv~AvRdSelariPe~l~~~i-----k~ryP~ 600 (1158)
T KOG2968|consen 566 L---TKQ------PRATTVMAVRDSELARIPEGLLNFI-----KLRYPQ 600 (1158)
T ss_pred h---hcC------CccceEEEEeehhhhhccHHHHHHH-----HHhccH
Confidence 4 222 3677999999999999999999988 778887
No 35
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.36 E-value=0.0021 Score=70.39 Aligned_cols=104 Identities=12% Similarity=0.038 Sum_probs=81.8
Q ss_pred HHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCeechh-hhhhh
Q 038306 286 ALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFCGEE-LVAWA 364 (494)
Q Consensus 286 ~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fGe~-~l~~~ 364 (494)
+++.+++...+..|++|++.|+..+.+|.+.+|...++..++.. ++..+....+|+-|... +++.+
T Consensus 110 ~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g-------------~~~llk~V~~G~~~tSllSiLd~ 176 (1158)
T KOG2968|consen 110 ELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDG-------------KEYLLKTVPPGGSFTSLLSILDS 176 (1158)
T ss_pred eechhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCC-------------ceeeEeeccCCCchHhHHHHHHh
Confidence 44588888899999999999999999999999999998765321 44558889999776655 45444
Q ss_pred cCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCCh
Q 038306 365 MDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSE 410 (494)
Q Consensus 365 l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~ 410 (494)
+.+.+ + +.++..++|.++|.+..++.+.|..+ +..||+
T Consensus 177 l~~~p-s--~~~~i~akA~t~~tv~~~p~~sF~~~-----~~k~P~ 214 (1158)
T KOG2968|consen 177 LPGFP-S--LSRTIAAKAATDCTVARIPYTSFRES-----FHKNPE 214 (1158)
T ss_pred ccCCC-c--ccceeeeeeecCceEEEeccchhhhh-----hccChH
Confidence 43332 2 24677889999999999999999998 777776
No 36
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.73 E-value=0.0066 Score=59.50 Aligned_cols=59 Identities=12% Similarity=0.260 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhccCCCcccccCc-------hhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 038306 144 LLHCFFWGLQSLSCLGQNLNTSTY-------IWED-FFAILITISGLMLFLFLIGNMQIYLQSKTIR 202 (494)
Q Consensus 144 Yl~slYwai~t~ttvGyGdi~p~t-------~~E~-~~~i~~~i~G~~~~ayiig~i~~il~~~~~~ 202 (494)
|..|+||.+.|+||+|+||.++.- ..++ .++.+.+++|..+++-.++.+.-.+..++..
T Consensus 187 yfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~~~ 253 (350)
T KOG4404|consen 187 YFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMNAE 253 (350)
T ss_pred hhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 678999999999999999987732 2333 5667777888888888887777766655543
No 37
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=96.59 E-value=0.011 Score=59.35 Aligned_cols=57 Identities=14% Similarity=0.349 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhccCCCccccc--CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038306 143 KLLHCFFWGLQSLSCLGQNLNTS--TYIWEDFFAILITISGLMLFLFLIGNMQIYLQSK 199 (494)
Q Consensus 143 ~Yl~slYwai~t~ttvGyGdi~p--~t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~~ 199 (494)
-...||-|++-|=||+|||--.+ .-+.-.+..++-+++|+++-|+++|.+-+=++.-
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarP 170 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARP 170 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 45688999999999999997543 3344456666778899999999999887766543
No 38
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.25 E-value=0.00079 Score=65.75 Aligned_cols=58 Identities=14% Similarity=0.241 Sum_probs=47.3
Q ss_pred CCChHHHHHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038306 137 MTDFPQKLLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQI 194 (494)
Q Consensus 137 ~~~~~~~Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~ 194 (494)
.....=++.-|||||++.+||+|||-.+|.|..-++|+|+..++|+-+--..+.++++
T Consensus 74 ~ag~qWkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gE 131 (350)
T KOG4404|consen 74 KAGPQWKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGE 131 (350)
T ss_pred ccccccccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHH
Confidence 3344446778999999999999999999999999999999999998765555544443
No 39
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=96.02 E-value=0.093 Score=49.13 Aligned_cols=92 Identities=8% Similarity=0.001 Sum_probs=67.9
Q ss_pred HHHHHHhccceeeecCCCEE-EccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCeechhhh
Q 038306 283 TLDALCDCVKPAFFIERAHI-VREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFCGEELV 361 (494)
Q Consensus 283 ~l~~l~~~l~~~~~~~ge~I-~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fGe~~l 361 (494)
..+.+....++..+++|..+ .......+.+++|.+|.|.+... ++ -. +....+...||-...
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr~-d~-ll---------------~~t~~aP~IlGl~~~ 76 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRRE-EN-VL---------------IGITQAPYIMGLADG 76 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEec-CC-eE---------------EEeccCCeEeecccc
Confidence 45667777788899999997 54444447899999999999533 22 22 667788889997643
Q ss_pred hhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHH
Q 038306 362 AWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVF 400 (494)
Q Consensus 362 ~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll 400 (494)
+.+.. ....++|.++|+++.+++++|.+++
T Consensus 77 ---~~~~~------~~~~l~ae~~c~~~~i~~~~~~~ii 106 (207)
T PRK11832 77 ---LMKND------IPYKLISEGNCTGYHLPAKQTITLI 106 (207)
T ss_pred ---cCCCC------ceEEEEEcCccEEEEeeHHHHHHHH
Confidence 22211 2357999999999999999999994
No 40
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=95.94 E-value=0.08 Score=46.62 Aligned_cols=100 Identities=11% Similarity=0.127 Sum_probs=72.2
Q ss_pred CcHHHHHHHHhc-cceeeecCCCEEEccCC-CCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 279 LDEATLDALCDC-VKPAFFIERAHIVREDY-PIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 279 ~s~~~l~~l~~~-l~~~~~~~ge~I~~~Ge-~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
.|....+.|+.. .+.....+|+.-..||. +.|.+-++++|.+++... |.. +..+.|.+|.
T Consensus 15 Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~--g~f----------------LH~I~p~qFl 76 (153)
T PF04831_consen 15 VSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCD--GRF----------------LHYIYPYQFL 76 (153)
T ss_pred CCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEEC--CEe----------------eEeecccccc
Confidence 567777778777 56677999999999995 668999999999999863 221 4455566655
Q ss_pred chhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHH
Q 038306 357 GEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVF 400 (494)
Q Consensus 357 Ge~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll 400 (494)
..-... +...... ..-..|+.|.++|..++++|+.+..++
T Consensus 77 DSPEW~-s~~~s~~---~~FQVTitA~~~Cryl~W~R~kL~~~l 116 (153)
T PF04831_consen 77 DSPEWE-SLRPSED---DKFQVTITAEEDCRYLCWPREKLYLLL 116 (153)
T ss_pred cChhhh-ccccCCC---CeEEEEEEEcCCcEEEEEEHHHHHHHH
Confidence 554431 1211111 224579999999999999999999884
No 41
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=95.46 E-value=0.043 Score=58.47 Aligned_cols=110 Identities=14% Similarity=0.228 Sum_probs=84.7
Q ss_pred HHHHHHhhhchhhhcCcHHHHHHHHhccceee-ecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCC
Q 038306 264 ELCLDLLKKVEEFKKLDEATLDALCDCVKPAF-FIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDND 342 (494)
Q Consensus 264 ~l~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~-~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~ 342 (494)
+...++..+.|-|.+++-...++||..|-... =..|.+|+..|+.-+..+.|++|.|++..++|.
T Consensus 277 eqLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk-------------- 342 (1283)
T KOG3542|consen 277 EQLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGK-------------- 342 (1283)
T ss_pred HHHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCc--------------
Confidence 33467788889999999999999998887555 468999999999999999999999999998875
Q ss_pred ccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEE-EEcceEEEEEeCHHHHHHHH
Q 038306 343 NKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTI-QALTKVEAFALMADDLKNVF 400 (494)
Q Consensus 343 ~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv-~A~~~~~l~~is~~df~~ll 400 (494)
...+.-|+-||...- .+.+ .-..-+ .-+.||+..+|...|+-.++
T Consensus 343 ----~e~l~mGnSFG~~PT---~dkq------ym~G~mRTkVDDCqFVciaqqDycrIl 388 (1283)
T KOG3542|consen 343 ----REELKMGNSFGAEPT---PDKQ------YMIGEMRTKVDDCQFVCIAQQDYCRIL 388 (1283)
T ss_pred ----eEEeecccccCCCCC---cchh------hhhhhhheecccceEEEeehhhHHHHH
Confidence 445667888887621 1100 001112 35788999999999999997
No 42
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=95.24 E-value=0.0043 Score=64.65 Aligned_cols=48 Identities=19% Similarity=0.353 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhhccCCCcccccCchhhH--------HHHHHHHHHHHHHHHHHH
Q 038306 142 QKLLHCFFWGLQSLSCLGQNLNTSTYIWED--------FFAILITISGLMLFLFLI 189 (494)
Q Consensus 142 ~~Yl~slYwai~t~ttvGyGdi~p~t~~E~--------~~~i~~~i~G~~~~ayii 189 (494)
--|+.|+||+++++|||||||+.|.+...+ .+..+..++|...++.+.
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 357899999999999999999999987755 577788888888877776
No 43
>PLN03223 Polycystin cation channel protein; Provisional
Probab=91.82 E-value=7.3 Score=45.83 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038306 172 FFAILITISGLMLFLFLIGNMQIYLQSK 199 (494)
Q Consensus 172 ~~~i~~~i~G~~~~ayiig~i~~il~~~ 199 (494)
.|..+++++..++.-++|+-|...++..
T Consensus 1398 YFfSFILLV~FILLNMFIAII~DSFsEV 1425 (1634)
T PLN03223 1398 YFYSYNIFVFMILFNFLLAIICDAFGEV 1425 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555543
No 44
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=91.00 E-value=0.34 Score=51.94 Aligned_cols=90 Identities=14% Similarity=0.178 Sum_probs=69.6
Q ss_pred HHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccc
Q 038306 268 DLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKK 347 (494)
Q Consensus 268 ~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~ 347 (494)
..+.+...|.++-..-++.++...+.+.++...++|+.|+++...|++.+|.|-+..
T Consensus 37 ~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g----------------------- 93 (1283)
T KOG3542|consen 37 EQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG----------------------- 93 (1283)
T ss_pred HHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec-----------------------
Confidence 356667888888888899999999999999999999999999999999999986531
Q ss_pred cccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeC
Q 038306 348 DHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALM 392 (494)
Q Consensus 348 ~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is 392 (494)
...-|...||-- .. ..|+.+.-.++.+++++++
T Consensus 94 qi~mp~~~fgkr-----~g-------~~r~~nclllq~semivid 126 (1283)
T KOG3542|consen 94 QIYMPYGCFGKR-----TG-------QNRTHNCLLLQESEMIVID 126 (1283)
T ss_pred ceecCccccccc-----cc-------cccccceeeecccceeeee
Confidence 123355566655 11 1266777888888888874
No 45
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=85.72 E-value=28 Score=38.92 Aligned_cols=75 Identities=16% Similarity=0.187 Sum_probs=51.1
Q ss_pred ccCCCcccccCch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHHhhccCCCCCHHHHH
Q 038306 156 SCLGQNLNTSTYI------WEDFFAILITISGLMLFLFLIGNMQIYLQSKTIRS-EEMRLKVREIEQRMPFQKLSGNLQQ 228 (494)
Q Consensus 156 ttvGyGdi~p~t~------~E~~~~i~~~i~G~~~~ayiig~i~~il~~~~~~~-~~~~~~~~~i~~~m~~~~lp~~L~~ 228 (494)
.|+|+||...... .-.+|.+++.++.++++-.+|+-|++-.......+ .+++..-.++-- |-++++|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~~iL-~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAATIL-MLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH-HHHhcCCHHHHH
Confidence 6899999865432 23466677777777788888888888777666655 555555544443 446889988887
Q ss_pred HHH
Q 038306 229 QIK 231 (494)
Q Consensus 229 ri~ 231 (494)
+-+
T Consensus 680 ~~~ 682 (782)
T KOG3676|consen 680 RFR 682 (782)
T ss_pred HHh
Confidence 733
No 46
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=84.36 E-value=0.26 Score=51.56 Aligned_cols=29 Identities=14% Similarity=0.271 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhccCCCcccccCchhhHHH
Q 038306 145 LHCFFWGLQSLSCLGQNLNTSTYIWEDFF 173 (494)
Q Consensus 145 l~slYwai~t~ttvGyGdi~p~t~~E~~~ 173 (494)
..|+||.++|++||||||..|.-..-.++
T Consensus 219 f~s~y~v~vtfstvgygd~~pd~w~sql~ 247 (1087)
T KOG3193|consen 219 FTSFYFVMVTFSTVGYGDWYPDYWASQLC 247 (1087)
T ss_pred eeeEEEEEEEEeeccccccccccchhhHH
Confidence 36899999999999999999954444333
No 47
>COG4709 Predicted membrane protein [Function unknown]
Probab=78.27 E-value=11 Score=34.56 Aligned_cols=73 Identities=19% Similarity=0.234 Sum_probs=53.7
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhh--cCCCHHHHhhhc--cHHHHHHHHHHHHHHHhhhchhhhcCcH
Q 038306 207 RLKVREIEQRMPFQKLSGNLQQQIKKYQQYIWRET--KGVDVENLISNL--PRDLRRNIKRELCLDLLKKVEEFKKLDE 281 (494)
Q Consensus 207 ~~~~~~i~~~m~~~~lp~~L~~ri~~y~~~~~~~~--~~~~e~~il~~L--p~~Lr~ei~~~l~~~~l~~i~~F~~~s~ 281 (494)
.+-++++++|++ ++|++.++.+..+|+-++... .+.+|+++..+| |.++-.|+..+.-.+-...-|-+.+.+.
T Consensus 4 ~efL~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~ 80 (195)
T COG4709 4 TEFLNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRR 80 (195)
T ss_pred HHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHH
Confidence 456778888985 899999999999998777653 456699999998 6777777776665555554455544443
No 48
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=76.65 E-value=16 Score=33.52 Aligned_cols=57 Identities=25% Similarity=0.464 Sum_probs=45.3
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHh--hcCCCHHHHhhhc--cHHHHHHHHHHH
Q 038306 207 RLKVREIEQRMPFQKLSGNLQQQIKKYQQYIWRE--TKGVDVENLISNL--PRDLRRNIKREL 265 (494)
Q Consensus 207 ~~~~~~i~~~m~~~~lp~~L~~ri~~y~~~~~~~--~~~~~e~~il~~L--p~~Lr~ei~~~l 265 (494)
++-+++++.+++ ++|++-++++.+||+-+.+. ..|.+|+++.++| |.++-+++..+.
T Consensus 4 ~efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 4 NEFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 456788888996 69999999999999988765 3467899999998 667766666554
No 49
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=72.10 E-value=1.9e+02 Score=33.27 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCHHHHhhhccHHHHHHHHHHHHH
Q 038306 220 QKLSGNLQQQIKKYQQYIWRETKGVDVENLISNLPRDLRRNIKRELCL 267 (494)
Q Consensus 220 ~~lp~~L~~ri~~y~~~~~~~~~~~~e~~il~~Lp~~Lr~ei~~~l~~ 267 (494)
..+|+.|+.+|..++.... ++.-.+++.+++....++...+..
T Consensus 357 ~~Lp~~Lr~~i~~~l~~~~-----l~~~~lF~~~s~~~l~~L~~~~~~ 399 (823)
T PLN03192 357 DQLPKSICKSICQHLFLPV-----VEKVYLFKGVSREILLLLVTKMKA 399 (823)
T ss_pred HHcCHHHHHHHHHHHHHHH-----HhhCcchhcCCHHHHHHHHHhhhe
Confidence 3689999999988775432 223357888888887777666543
No 50
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=70.78 E-value=5 Score=30.00 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=31.8
Q ss_pred eeecCCCEEEccCCCCC-eEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 294 AFFIERAHIVREDYPID-EMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 294 ~~~~~ge~I~~~Ge~~~-~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
..++||+..-..-.... ++++|.+|.+.+.. ++. ...+.+|+.+
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~-~~~------------------~~~l~~Gd~~ 47 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV-DGE------------------RVELKPGDAI 47 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEE-TTE------------------EEEEETTEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEE-ccE------------------EeEccCCEEE
Confidence 45778887655555555 99999999999983 332 5667788876
No 51
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=67.38 E-value=1.3e+02 Score=34.88 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=14.4
Q ss_pred hhcCCCCCCCCCCCCCCCCCC
Q 038306 462 LQGINFPNRTPQYLPQPQGET 482 (494)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~ 482 (494)
+.+-+.|+++|..++.-|+..
T Consensus 1709 gp~pr~p~gsp~lp~~~pg~a 1729 (1956)
T KOG2302|consen 1709 GPGPRLPTGSPGLPGRGPGGA 1729 (1956)
T ss_pred CCCCCCCCCCCCCCCCCCCCC
Confidence 567778888777766666543
No 52
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=66.77 E-value=61 Score=28.96 Aligned_cols=57 Identities=16% Similarity=0.077 Sum_probs=32.8
Q ss_pred cCCChHHHHHHHHHHHHHhhccCCCcccccCchhh-----HHHHHHHHHHHHHHHHHHHHHH
Q 038306 136 EMTDFPQKLLHCFFWGLQSLSCLGQNLNTSTYIWE-----DFFAILITISGLMLFLFLIGNM 192 (494)
Q Consensus 136 ~~~~~~~~Yl~slYwai~t~ttvGyGdi~p~t~~E-----~~~~i~~~i~G~~~~ayiig~i 192 (494)
.+.........++-.++.++...--|+--+..... ..+..+..+...++.++++.++
T Consensus 134 ~~~~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nl 195 (200)
T PF00520_consen 134 ENDIYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNL 195 (200)
T ss_dssp ---SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHH
Confidence 44555666777788888887766666665545554 3455555555555555555443
No 53
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=61.52 E-value=2.4e+02 Score=32.92 Aligned_cols=31 Identities=10% Similarity=0.311 Sum_probs=16.0
Q ss_pred chhhHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 038306 167 YIWEDFFA-ILITISGLMLFLFLIGNMQIYLQ 197 (494)
Q Consensus 167 t~~E~~~~-i~~~i~G~~~~ayiig~i~~il~ 197 (494)
|++-.+|. ++..|+..++...++|.+..-+.
T Consensus 1358 npwmllYfIsfllIvsffVlnmfVgvvvenfh 1389 (1956)
T KOG2302|consen 1358 NPWMLLYFISFLLIVSFFVLNMFVGVVVENFH 1389 (1956)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45544443 34445555566666666655443
No 54
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=59.35 E-value=10 Score=32.99 Aligned_cols=76 Identities=11% Similarity=0.099 Sum_probs=50.8
Q ss_pred ChHHHHHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcc
Q 038306 139 DFPQKLLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQIYLQSKTIRSEEMRLKVREIEQRMP 218 (494)
Q Consensus 139 ~~~~~Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~~~~~~~~~~~~~~~i~~~m~ 218 (494)
........++++.+.+++. +-++..|.+...+++.++..+++.++.++.-+++++.+..... ...++.+++..+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~-----~~~i~sl~dL~~ 113 (148)
T PF00060_consen 40 RWRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPKY-----EPPIDSLEDLAN 113 (148)
T ss_dssp -HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-----TSS-SSHHHHHT
T ss_pred cCcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc-----CCCCCCHHHHHH
Confidence 3456677788888888776 4467899999999999999999999999999999998874432 223444555444
Q ss_pred CC
Q 038306 219 FQ 220 (494)
Q Consensus 219 ~~ 220 (494)
..
T Consensus 114 ~~ 115 (148)
T PF00060_consen 114 SG 115 (148)
T ss_dssp HS
T ss_pred CC
Confidence 43
No 55
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=57.58 E-value=18 Score=30.24 Aligned_cols=44 Identities=18% Similarity=0.416 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhh----------cCCCHHHHhhhccHHHHHHHHHH
Q 038306 221 KLSGNLQQQIKKYQQYIWRET----------KGVDVENLISNLPRDLRRNIKRE 264 (494)
Q Consensus 221 ~lp~~L~~ri~~y~~~~~~~~----------~~~~e~~il~~Lp~~Lr~ei~~~ 264 (494)
-||.++|..|...+.-.-... ...+...++..||+.||.+|...
T Consensus 52 ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 689999999999997654321 12345679999999999999764
No 56
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=55.47 E-value=47 Score=40.73 Aligned_cols=82 Identities=11% Similarity=0.129 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHH-----HHHHHHHH----HH-hhhhhhHHHHHHHHHH
Q 038306 144 LLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLF-----LIGNMQIY----LQ-SKTIRSEEMRLKVREI 213 (494)
Q Consensus 144 Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ay-----iig~i~~i----l~-~~~~~~~~~~~~~~~i 213 (494)
+..-+|=++-+ +.++-|-+.+.+....+|-++..++|.++..- +|.+...- .. .....+.++...+..+
T Consensus 1052 W~~i~~~~ids-~~~~~~p~~~~~~~~~~ffvifii~~~ff~lnlFvgvII~nf~~q~~~~~~~~~~~eq~~~~~~~~~l 1130 (1592)
T KOG2301|consen 1052 WPDIMYAAIDS-RGVNAQPILESNLYMYLFFVIFIIIGSFFTLNLFVGVIIDNFNQQKGKAGGTFMTEEQKKRLNAAKKL 1130 (1592)
T ss_pred HHHHHHHHhhh-hccCcCCcccccccceeehhhhhhHHhhhheeeeEEEEEechhhhchhhhhhhhhHHHHHHHHHHHHh
Confidence 33344444433 45565666666677777777776776655432 22222221 11 2233444455555555
Q ss_pred HhhccCCCCCHHH
Q 038306 214 EQRMPFQKLSGNL 226 (494)
Q Consensus 214 ~~~m~~~~lp~~L 226 (494)
...=..+.+|+.+
T Consensus 1131 ~sk~~~r~ipr~~ 1143 (1592)
T KOG2301|consen 1131 GSKPPQRPIPRPR 1143 (1592)
T ss_pred cCCCCCCCCCCCc
Confidence 5555666666554
No 57
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=53.59 E-value=50 Score=28.38 Aligned_cols=69 Identities=6% Similarity=0.022 Sum_probs=41.2
Q ss_pred ceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCeechhhhhhhcCCCCCC
Q 038306 292 KPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSS 371 (494)
Q Consensus 292 ~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~ 371 (494)
....+.||..+-.--....++++|++|.+.+...++++ ...+.+||.+--- ..
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~-----------------~~~L~aGD~i~~~-------~~--- 90 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGE-----------------VHPIRPGTMYALD-------KH--- 90 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCE-----------------EEEeCCCeEEEEC-------CC---
Confidence 34567888755322112247999999999987322122 5678899987422 11
Q ss_pred CCCCcccEEEEcceEEEEEe
Q 038306 372 NLPISTRTIQALTKVEAFAL 391 (494)
Q Consensus 372 ~~~~r~~tv~A~~~~~l~~i 391 (494)
..-.+++.++++++++
T Consensus 91 ----~~H~~~N~e~~~~l~v 106 (125)
T PRK13290 91 ----DRHYLRAGEDMRLVCV 106 (125)
T ss_pred ----CcEEEEcCCCEEEEEE
Confidence 1124555577877765
No 58
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=52.23 E-value=83 Score=23.06 Aligned_cols=40 Identities=13% Similarity=0.159 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHhhcc
Q 038306 176 LITISGLMLFLFLIGNMQIYLQSKT---IRSEEMRLKVREIEQRMP 218 (494)
Q Consensus 176 ~~~i~G~~~~ayiig~i~~il~~~~---~~~~~~~~~~~~i~~~m~ 218 (494)
.+.+++.+.|+.+ +-.++.+.+ +......+|+|++-+.+.
T Consensus 14 ~l~vl~~~~Ftl~---IRri~~~s~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 14 ILIVLFGASFTLF---IRRILINSNAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHHHHHHHH---HHHHHHhccccccchhHHHHHHHHHHHHHc
Confidence 3344444455544 344444433 233357888888877664
No 59
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=52.11 E-value=72 Score=32.92 Aligned_cols=64 Identities=17% Similarity=0.269 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 038306 140 FPQKLLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQIYLQSKTIRS 203 (494)
Q Consensus 140 ~~~~Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~~~~~~ 203 (494)
..--|+.+|-|++..+.+++-++.......-..+++++.+++.++|-|.|..++..++--+--.
T Consensus 97 vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ii~ 160 (371)
T PF10011_consen 97 VLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSNIIA 160 (371)
T ss_pred HHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3456899999999999888866542222223777888888888889999988888876444333
No 60
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=51.26 E-value=17 Score=28.05 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=23.2
Q ss_pred CeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 310 DEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 310 ~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
+++.+|++|.|.+...++. ...+.+||.|
T Consensus 26 ~E~~~vleG~v~it~~~G~------------------~~~~~aGD~~ 54 (74)
T PF05899_consen 26 DEFFYVLEGEVTITDEDGE------------------TVTFKAGDAF 54 (74)
T ss_dssp EEEEEEEEEEEEEEETTTE------------------EEEEETTEEE
T ss_pred CEEEEEEEeEEEEEECCCC------------------EEEEcCCcEE
Confidence 8889999999999876432 5677888887
No 61
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=47.89 E-value=2.1e+02 Score=29.95 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 038306 171 DFFAILITISGLMLFLFLI-GNMQIYLQ 197 (494)
Q Consensus 171 ~~~~i~~~i~G~~~~ayii-g~i~~il~ 197 (494)
.+++.+..+.-.++..+++ +-+.+++.
T Consensus 392 ~~lg~l~~~~~~~~~~~illNl~iaIi~ 419 (425)
T PF08016_consen 392 PVLGPLFFFSFMFLVFFILLNLFIAIIN 419 (425)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433 44444443
No 62
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=43.20 E-value=1.7e+02 Score=33.01 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=35.4
Q ss_pred hhhccHHHHHHHHHHHHHHHhh-----hchhhhcCcHHHHHHHHhccce
Q 038306 250 ISNLPRDLRRNIKRELCLDLLK-----KVEEFKKLDEATLDALCDCVKP 293 (494)
Q Consensus 250 l~~Lp~~Lr~ei~~~l~~~~l~-----~i~~F~~~s~~~l~~l~~~l~~ 293 (494)
..+||++||+.|..+...+... .-.+++++|++....|..++-.
T Consensus 370 ~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~ 418 (727)
T KOG0498|consen 370 RRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCL 418 (727)
T ss_pred hccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhH
Confidence 4689999999999888776654 4478999999988888887743
No 63
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=42.33 E-value=1.7e+02 Score=27.18 Aligned_cols=60 Identities=22% Similarity=0.299 Sum_probs=40.5
Q ss_pred hhhccHHHHHHHHHHHHHHHhhhchhh-hcCcHHHHHHHHhccceee--ecCCCEEEccCCCCC
Q 038306 250 ISNLPRDLRRNIKRELCLDLLKKVEEF-KKLDEATLDALCDCVKPAF--FIERAHIVREDYPID 310 (494)
Q Consensus 250 l~~Lp~~Lr~ei~~~l~~~~l~~i~~F-~~~s~~~l~~l~~~l~~~~--~~~ge~I~~~Ge~~~ 310 (494)
...+|+. ...+...+...++.-.-.| ...++...+.......+.. +.+|+.|+++|++.+
T Consensus 145 ~~~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 145 SSNLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred ccCCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 3455666 3444444444444332222 3366778888899999998 999999999999765
No 64
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=40.79 E-value=51 Score=29.62 Aligned_cols=64 Identities=13% Similarity=0.254 Sum_probs=41.0
Q ss_pred EccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEE
Q 038306 303 VREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQA 382 (494)
Q Consensus 303 ~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A 382 (494)
++..+ .+++|++++|.+.+...++|+.. ...+.+|++|=-- .. .+ .+-++
T Consensus 43 ~H~~~-tdE~FyqleG~~~l~v~d~g~~~---------------~v~L~eGd~flvP--------~g---vp---HsP~r 92 (159)
T TIGR03037 43 FHDDP-GEEFFYQLKGEMYLKVTEEGKRE---------------DVPIREGDIFLLP--------PH---VP---HSPQR 92 (159)
T ss_pred cccCC-CceEEEEEcceEEEEEEcCCcEE---------------EEEECCCCEEEeC--------CC---CC---ccccc
Confidence 44433 68999999999999776654322 5678899987221 11 11 13445
Q ss_pred cceEEEEEeCHHHH
Q 038306 383 LTKVEAFALMADDL 396 (494)
Q Consensus 383 ~~~~~l~~is~~df 396 (494)
.++|.+++|.+..-
T Consensus 93 ~~~t~~LvIE~~r~ 106 (159)
T TIGR03037 93 PAGSIGLVIERKRP 106 (159)
T ss_pred CCCcEEEEEEeCCC
Confidence 57788888776543
No 65
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=40.46 E-value=52 Score=28.18 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=26.8
Q ss_pred ccceeeecCCCEE-EccCCCCCeEEEEEeeEEEEEee
Q 038306 290 CVKPAFFIERAHI-VREDYPIDEMLFVVQGKLWNYTS 325 (494)
Q Consensus 290 ~l~~~~~~~ge~I-~~~Ge~~~~lyfI~~G~v~v~~~ 325 (494)
......++||+-+ .+--...++.|+|++|...+...
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~ 73 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG 73 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC
Confidence 4455667788775 44444578999999999999864
No 66
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=40.37 E-value=54 Score=27.97 Aligned_cols=50 Identities=24% Similarity=0.204 Sum_probs=38.3
Q ss_pred cceeeecCCCEEEccCCC-CCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCeechh
Q 038306 291 VKPAFFIERAHIVREDYP-IDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFCGEE 359 (494)
Q Consensus 291 l~~~~~~~ge~I~~~Ge~-~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fGe~ 359 (494)
+....+.||..+-.--.+ .+...+|.+|.+++... +. ...+.+||++-.-
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~-g~------------------~~~l~~Gd~i~ip 95 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE-GE------------------KKELKAGDVIIIP 95 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec-CC------------------ceEecCCCEEEEC
Confidence 345668888888776665 77899999999999875 32 5678899998544
No 67
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=35.99 E-value=53 Score=30.06 Aligned_cols=62 Identities=11% Similarity=0.241 Sum_probs=40.7
Q ss_pred CCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceE
Q 038306 307 YPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKV 386 (494)
Q Consensus 307 e~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~ 386 (494)
+..++++++++|.+.+...++|+.. ...+.+|++|=-- . +.+. +-++..+|
T Consensus 52 ~~tdE~FyqleG~~~l~v~d~g~~~---------------~v~L~eGd~fllP--------~---gvpH---sP~r~~~t 102 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQEDGKRR---------------DVPIREGEMFLLP--------P---HVPH---SPQREAGS 102 (177)
T ss_pred CCCceEEEEECCeEEEEEEcCCcee---------------eEEECCCCEEEeC--------C---CCCc---CCccCCCe
Confidence 4568999999999998887655322 5678899987221 1 1111 23445788
Q ss_pred EEEEeCHHHHH
Q 038306 387 EAFALMADDLK 397 (494)
Q Consensus 387 ~l~~is~~df~ 397 (494)
..++|.+..-.
T Consensus 103 v~LviE~~r~~ 113 (177)
T PRK13264 103 IGLVIERKRPE 113 (177)
T ss_pred EEEEEEeCCCC
Confidence 88888665443
No 68
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=35.85 E-value=80 Score=32.17 Aligned_cols=27 Identities=11% Similarity=0.165 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHhhhh
Q 038306 12 LLKFLVFFQYVPRVIRIYPLFTKATRNS 39 (494)
Q Consensus 12 ~l~~~~l~~~l~RLlr~~rl~~~~~~~~ 39 (494)
+||.++|.| +.|++++.|-.+-++.+.
T Consensus 325 ILRViRLVR-VFRIFKLSRHSkGLQILG 351 (507)
T KOG1545|consen 325 ILRVIRLVR-VFRIFKLSRHSKGLQILG 351 (507)
T ss_pred HHHHHHHHH-HhhheeeccccchHHHHH
Confidence 344444444 444444444444444333
No 69
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=33.04 E-value=1.6e+02 Score=25.95 Aligned_cols=44 Identities=25% Similarity=0.434 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-------------hhhHHHHHHHHHHHhhcc
Q 038306 175 ILITISGLMLFLFLIGNMQIYLQSKT-------------IRSEEMRLKVREIEQRMP 218 (494)
Q Consensus 175 i~~~i~G~~~~ayiig~i~~il~~~~-------------~~~~~~~~~~~~i~~~m~ 218 (494)
+++.++|..+||+|++-+.+.-.... -...+|+.+++...+.++
T Consensus 10 lLi~vIglAL~aFIv~d~~~~~~~~~~~~~~VG~VnGe~Is~~ef~~~v~~~~~~~k 66 (145)
T PF13623_consen 10 LLIIVIGLALFAFIVGDFRSGSGFFGSSQNVVGEVNGEKISYQEFQQRVEQATENYK 66 (145)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcCCCCCeeEeECCEEcCHHHHHHHHHHHHHHHH
Confidence 57788999999999977644322111 134567777777765443
No 70
>PHA02909 hypothetical protein; Provisional
Probab=32.25 E-value=1e+02 Score=22.34 Aligned_cols=25 Identities=8% Similarity=0.389 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 038306 49 KAVFNLLLYLLAAHVFGALWYFFSI 73 (494)
Q Consensus 49 ~~~~~ll~~~~~~H~~aC~w~~i~~ 73 (494)
++++..++|+-+...+||.+.+++.
T Consensus 37 sfilfviiflsmftilacsyvyiai 61 (72)
T PHA02909 37 SFILFVIIFLSMFTILACSYVYIAI 61 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555567889999999984
No 71
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=31.57 E-value=47 Score=24.32 Aligned_cols=18 Identities=33% Similarity=0.667 Sum_probs=15.7
Q ss_pred HHhhhccHHHHHHHHHHH
Q 038306 248 NLISNLPRDLRRNIKREL 265 (494)
Q Consensus 248 ~il~~Lp~~Lr~ei~~~l 265 (494)
++++.||.+|+.++...+
T Consensus 6 elfqkLPDdLKrEvldY~ 23 (65)
T COG5559 6 ELFQKLPDDLKREVLDYI 23 (65)
T ss_pred HHHHHCcHHHHHHHHHHH
Confidence 589999999999997765
No 72
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=29.39 E-value=67 Score=20.80 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=19.2
Q ss_pred HHHHHHhhccCCCCC-----HHHHHHHHHHH
Q 038306 209 KVREIEQRMPFQKLS-----GNLQQQIKKYQ 234 (494)
Q Consensus 209 ~~~~i~~~m~~~~lp-----~~L~~ri~~y~ 234 (494)
++.++.++++.+++| .+|..|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 356788888888887 46888888775
No 73
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=29.23 E-value=1.3e+02 Score=24.90 Aligned_cols=49 Identities=16% Similarity=0.263 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhh---------cCC---C-HHHHhhhccHHHHHHHHHHHHHHH
Q 038306 221 KLSGNLQQQIKKYQQYIWRET---------KGV---D-VENLISNLPRDLRRNIKRELCLDL 269 (494)
Q Consensus 221 ~lp~~L~~ri~~y~~~~~~~~---------~~~---~-e~~il~~Lp~~Lr~ei~~~l~~~~ 269 (494)
-||.+++.+|..-....-... ... + ..++|..||++||.+|........
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~~ 69 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRER 69 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHHH
Confidence 478999999855544321100 000 1 357999999999999988776554
No 74
>PHA01757 hypothetical protein
Probab=28.71 E-value=2.9e+02 Score=21.68 Aligned_cols=47 Identities=17% Similarity=0.320 Sum_probs=33.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 038306 167 YIWEDFFAILITISGLMLFLFLIGNMQIYLQSKTIRSEEMRLKVREIE 214 (494)
Q Consensus 167 t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~~~~~~~~~~~~~~~i~ 214 (494)
+..|-.+--|+...|++.-+|++|.+..+.... .+.+.|..-++++.
T Consensus 4 ~l~e~al~gf~a~~g~l~~~fii~e~~hlynek-~~nenf~~AvD~m~ 50 (98)
T PHA01757 4 TLLEGALYGFFAVTGALSASFIIGEIVHLYNEK-QRNENFAKAIDQMS 50 (98)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-hhhHhHHHHHHHHH
Confidence 456777778888899999999999998876543 33345555555543
No 75
>PRK06771 hypothetical protein; Provisional
Probab=28.14 E-value=3.3e+02 Score=22.14 Aligned_cols=41 Identities=12% Similarity=0.272 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCCC
Q 038306 182 LMLFLFLIGNMQIYLQSKTIRSEEMRLKVREIEQRMPFQKL 222 (494)
Q Consensus 182 ~~~~ayiig~i~~il~~~~~~~~~~~~~~~~i~~~m~~~~l 222 (494)
++.|-|+...+..+....+.+....+.+++.+.+.+.--..
T Consensus 11 ~~~~i~i~~~l~~~~~~~~~~~k~ie~~L~~I~~~~Gi~~~ 51 (93)
T PRK06771 11 IFGFIYIVEKLTKIEKKTDARLKRMEDRLQLITKEMGIVDR 51 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 33445567777778777777777888888888777654433
No 76
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=28.00 E-value=1.2e+02 Score=33.07 Aligned_cols=52 Identities=10% Similarity=0.142 Sum_probs=41.1
Q ss_pred HHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038306 146 HCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQIYLQ 197 (494)
Q Consensus 146 ~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il~ 197 (494)
.+++|+-..+..-|-|+-+|.+..-+++.+++.=+.+++.|-.-+++++.+-
T Consensus 616 sAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFLV 667 (993)
T KOG4440|consen 616 SAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLV 667 (993)
T ss_pred hhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhee
Confidence 5677777777777888889999999999998887777777777777777654
No 77
>PHA03029 hypothetical protein; Provisional
Probab=26.81 E-value=3e+02 Score=21.24 Aligned_cols=38 Identities=26% Similarity=0.181 Sum_probs=26.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 038306 167 YIWEDFFAILITISGLMLFLFLIGNMQIYLQSKTIRSE 204 (494)
Q Consensus 167 t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~~~~~~~ 204 (494)
++.|.+|-++..++=.++.-.+||-+=..+.+.++.+.
T Consensus 2 ~d~ei~~~ii~~iiyiilila~igiiwg~llsi~k~ra 39 (92)
T PHA03029 2 DDAEIVFLIIAIIIYIILILAIIGIIWGFLLSINKIRA 39 (92)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888887777777777777777666665554443
No 78
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=26.20 E-value=1.1e+02 Score=26.60 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=35.2
Q ss_pred ccceeeecCCCEEEccCC-CCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCeec
Q 038306 290 CVKPAFFIERAHIVREDY-PIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFCG 357 (494)
Q Consensus 290 ~l~~~~~~~ge~I~~~Ge-~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fG 357 (494)
.+....+.||...-..-. ...++++|++|...+...+.+. ++.....+.+||.+-
T Consensus 31 ~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~-------------~~~~~~~l~~GD~~~ 86 (146)
T smart00835 31 SAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNG-------------NKVYDARLREGDVFV 86 (146)
T ss_pred EEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCC-------------CeEEEEEecCCCEEE
Confidence 344456778877654433 2568999999999988643210 122366788988773
No 79
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=25.96 E-value=9.9e+02 Score=26.95 Aligned_cols=58 Identities=9% Similarity=0.045 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 038306 13 LKFLVFFQYVPRVIRIYPLFTKATRNSSKLDEATWA-KAVFNLLLYLLAAHVFGALWYFFS 72 (494)
Q Consensus 13 l~~~~l~~~l~RLlr~~rl~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~H~~aC~w~~i~ 72 (494)
+=+..++. ..|++.+.|.++.+......+. ..+. .++..+++++++.=-+||.++.+-
T Consensus 472 ~a~~~~l~-~~rll~~~~~~~~lGp~~i~l~-~mi~~dl~~F~~i~~v~l~aF~~~~~~l~ 530 (743)
T TIGR00870 472 FAFALVLS-WLNLLYIFRGNQHLGPLQIMIG-RMILGDILRFLFIYAVVLFGFACGLNQLY 530 (743)
T ss_pred HHHHHHHH-HHHHHHHHhhchhcCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444 5666666666666554433221 1122 233334444433334555555554
No 80
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=25.41 E-value=2.2e+02 Score=30.26 Aligned_cols=23 Identities=13% Similarity=0.345 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHH
Q 038306 186 LFLIGNMQIYLQSKTIRSEEMRL 208 (494)
Q Consensus 186 ayiig~i~~il~~~~~~~~~~~~ 208 (494)
..|+.+.+...+.....+...+.
T Consensus 424 tiIv~nF~~~y~~~k~~~~~~~~ 446 (477)
T KOG3713|consen 424 TIIVNNFSMYYSELKAREKAPKR 446 (477)
T ss_pred HhHhhhHHHHHHHHHHHHHhhhh
Confidence 34666666666555554444333
No 81
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=25.30 E-value=4e+02 Score=28.74 Aligned_cols=50 Identities=8% Similarity=-0.007 Sum_probs=31.6
Q ss_pred HHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038306 146 HCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQIYL 196 (494)
Q Consensus 146 ~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il 196 (494)
.++--.+..+.+.|||-+.| +-.....-.+.+-+..++++-+.+-+..+-
T Consensus 281 ~Tlsr~LlLIVSlGYGIVkP-~Lg~~l~rv~~ig~~~~i~s~i~~l~~~~g 330 (518)
T KOG2568|consen 281 KTLSRLLLLIVSLGYGIVKP-TLGGTLLRVCQIGVIYFIASEILGLARVIG 330 (518)
T ss_pred HHHHHHHHHHHhcCcceEec-CcchHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 34556677788999999888 555555555555555555555555444443
No 82
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=25.06 E-value=6e+02 Score=31.66 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 038306 171 DFFAILITISGLM 183 (494)
Q Consensus 171 ~~~~i~~~i~G~~ 183 (494)
.++-++++++|-.
T Consensus 636 ~i~Fi~~~l~gn~ 648 (1592)
T KOG2301|consen 636 AIYFIAYFLFGNL 648 (1592)
T ss_pred hhHHHHHHHHHHH
Confidence 3444555555543
No 83
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=25.01 E-value=1.9e+02 Score=26.50 Aligned_cols=50 Identities=4% Similarity=0.047 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHH
Q 038306 141 PQKLLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIG 190 (494)
Q Consensus 141 ~~~Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig 190 (494)
.=.|..-+|+|++.-+|..=.|+.+.+..=+-....=.+++.++.+.+++
T Consensus 130 ~P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~ilA 179 (180)
T PF07077_consen 130 EPDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVILA 179 (180)
T ss_pred CCCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34578889999999999988899988887777777777777766666654
No 84
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=23.42 E-value=96 Score=32.18 Aligned_cols=43 Identities=16% Similarity=0.094 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhhccCCCccc--ccCchhhHHHHHHHHHHHHHH
Q 038306 142 QKLLHCFFWGLQSLSCLGQNLN--TSTYIWEDFFAILITISGLML 184 (494)
Q Consensus 142 ~~Yl~slYwai~t~ttvGyGdi--~p~t~~E~~~~i~~~i~G~~~ 184 (494)
.....+++.++++++|.|+... ..-+..=.++.+++|++|...
T Consensus 230 ~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~~ 274 (390)
T TIGR00933 230 GALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGCS 274 (390)
T ss_pred HHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCCC
Confidence 4456778889999999998743 333445567778888888654
No 85
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=23.15 E-value=1e+02 Score=24.07 Aligned_cols=40 Identities=15% Similarity=0.476 Sum_probs=27.7
Q ss_pred HHHhhhccHHHHHHHHHHHHHHHhhhchhhhcCcHHHHHHHHhcccee
Q 038306 247 ENLISNLPRDLRRNIKRELCLDLLKKVEEFKKLDEATLDALCDCVKPA 294 (494)
Q Consensus 247 ~~il~~Lp~~Lr~ei~~~l~~~~l~~i~~F~~~s~~~l~~l~~~l~~~ 294 (494)
.++|..||+.+|.++...+ --+..++++.++.+-..++..
T Consensus 30 A~VL~~lp~e~r~~v~~Ri--------a~~~~v~~~~i~~ie~~L~~~ 69 (79)
T PF14841_consen 30 AEVLSQLPEELRAEVVRRI--------ARLESVSPEVIEEIEEVLEEK 69 (79)
T ss_dssp HHHHHTS-HHHHHHHHHHH--------HTCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHH--------HccCCCCHHHHHHHHHHHHHH
Confidence 3588889988888775553 456678888888777766543
No 86
>COG4325 Predicted membrane protein [Function unknown]
Probab=21.81 E-value=5.2e+02 Score=26.84 Aligned_cols=60 Identities=15% Similarity=0.223 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHHHHhhccCC-----CcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038306 139 DFPQKLLHCFFWGLQSLSCLG-----QNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQIYLQSKT 200 (494)
Q Consensus 139 ~~~~~Yl~slYwai~t~ttvG-----yGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~~~ 200 (494)
.....++..|-|++..++||| ||-..| ..-...+++..|+..+.+-|.+..++..++-.+
T Consensus 128 vvLa~FlctFvysl~vlrtvg~e~d~~g~FIp--~~avtv~lLlaiisig~~iyfl~~l~~siq~~n 192 (464)
T COG4325 128 VVLAIFLCTFVYSLGVLRTVGEERDGQGAFIP--KVAVTVSLLLAIISIGALIYFLHHLMHSIQIDN 192 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCcccccee--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999997 333444 233455566666666777777777776655443
No 87
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=21.56 E-value=4.3e+02 Score=21.16 Aligned_cols=60 Identities=8% Similarity=0.025 Sum_probs=37.8
Q ss_pred HHHHHHHhhccC-CCCCHHHHHHHHHHHHHHHHhhcCCC--HHHHhhhccHHHHHHHHHHHHH
Q 038306 208 LKVREIEQRMPF-QKLSGNLQQQIKKYQQYIWRETKGVD--VENLISNLPRDLRRNIKRELCL 267 (494)
Q Consensus 208 ~~~~~i~~~m~~-~~lp~~L~~ri~~y~~~~~~~~~~~~--e~~il~~Lp~~Lr~ei~~~l~~ 267 (494)
+....+..+|.. .++++.-+.+++..++..-....... -..+-..+++..|..+...+..
T Consensus 19 ~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~ 81 (104)
T cd07313 19 EERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWE 81 (104)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345667777776 48999999999998876654322222 1223445567777776655543
No 88
>COG1615 Uncharacterized conserved protein [Function unknown]
Probab=21.18 E-value=96 Score=34.59 Aligned_cols=37 Identities=5% Similarity=0.074 Sum_probs=32.4
Q ss_pred HhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHH
Q 038306 153 QSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLI 189 (494)
Q Consensus 153 ~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayii 189 (494)
.+.++-||-||+..-+.+.+++.+.+++++.+|..+.
T Consensus 220 g~~~GA~YTDI~~~lP~~~iL~aial~~aia~f~ai~ 256 (885)
T COG1615 220 GTFTGAGYTDINAQLPAKLILIAIALLCAIAFFSAIF 256 (885)
T ss_pred CcccccCceeeeeeccHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999998877665
No 89
>PF12355 Dscam_C: Down syndrome cell adhesion molecule C terminal ; InterPro: IPR021012 This entry is specific to the insecta, predominantly Drosophila spp. This entry is found in association with PF00047 from PFAM, PF07679 from PFAM and PF00041 from PFAM. The Down syndrome cell adhesion molecule (Dscam) belongs to a family of cell membrane molecules involved in the differentiation of the nervous system. This is the C-terminal cytoplasmic tail region of Dscam. In Drosophila melanogaster (Fruit fly) the gene has at least 59 different transcripts. Dscam may play a role in the nervous and immune systems [].
Probab=20.68 E-value=45 Score=27.62 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=15.9
Q ss_pred hHHHHhhhcCCCCCCCCCCCCCCCCCCCC
Q 038306 456 ASLLNALQGINFPNRTPQYLPQPQGETET 484 (494)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (494)
.+.++..|. .-+++||.|||||---++
T Consensus 49 rrs~gs~~~--~~~gSPePPpPPPRn~D~ 75 (124)
T PF12355_consen 49 RRSVGSARN--PGNGSPEPPPPPPRNHDV 75 (124)
T ss_pred eeccccccC--CCCCCCCCCCcCCCCCCC
Confidence 333444444 457788888877765543
No 90
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=20.59 E-value=9.6e+02 Score=27.48 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 038306 53 NLLLYLLAAHVFGALWYFFSI 73 (494)
Q Consensus 53 ~ll~~~~~~H~~aC~w~~i~~ 73 (494)
.|+++-|.+|.+--.||+...
T Consensus 512 ~lvl~aF~iGl~qLy~yy~~~ 532 (822)
T KOG3609|consen 512 VLVLVAFSIGLNQLYDYYLNR 532 (822)
T ss_pred HHHHHHHHhccchHhhhhcch
Confidence 333444778888889999884
No 91
>PRK09108 type III secretion system protein HrcU; Validated
Probab=20.56 E-value=2.5e+02 Score=28.74 Aligned_cols=70 Identities=9% Similarity=0.143 Sum_probs=39.8
Q ss_pred ccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCCCCHHHHHHHHHH
Q 038306 164 TSTYIWEDFFAILITISGLMLFLFLIGNMQIYLQSKTIRSEEMRLKVREIEQRMPFQKLSGNLQQQIKKY 233 (494)
Q Consensus 164 ~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~ri~~y 233 (494)
.+......++.++..++..+..++++-.+....-+...-.++.+-.-+++++-+|+.--+++++.|+|+-
T Consensus 173 ~~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrRq~ 242 (353)
T PRK09108 173 SPPDLAQILWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERKRL 242 (353)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 3444555566666666666666666655555554433333333333456666666666666666666543
Done!