Query 038306
Match_columns 494
No_of_seqs 366 out of 2826
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 16:32:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038306.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038306hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bpz_A Potassium/sodium hyperp 100.0 7.3E-30 2.5E-34 239.0 21.1 181 197-410 2-182 (202)
2 2ptm_A Hyperpolarization-activ 100.0 3.7E-30 1.3E-34 240.1 18.6 181 198-410 2-182 (198)
3 3ukn_A Novel protein similar t 100.0 5.6E-31 1.9E-35 248.3 11.5 201 193-432 1-201 (212)
4 3beh_A MLL3241 protein; transm 100.0 1.2E-30 4E-35 265.9 10.9 178 141-410 159-336 (355)
5 4f8a_A Potassium voltage-gated 99.8 2.2E-18 7.5E-23 153.7 11.7 135 246-410 5-139 (160)
6 3dn7_A Cyclic nucleotide bindi 99.7 6.7E-17 2.3E-21 149.1 12.8 154 267-454 6-161 (194)
7 2a9h_A Voltage-gated potassium 99.7 3.6E-16 1.2E-20 139.1 11.7 64 142-205 83-146 (155)
8 4ev0_A Transcription regulator 99.7 4.7E-16 1.6E-20 145.7 13.2 151 270-454 1-152 (216)
9 3mdp_A Cyclic nucleotide-bindi 99.7 6.7E-16 2.3E-20 134.5 12.9 130 268-433 6-139 (142)
10 3ocp_A PRKG1 protein; serine/t 99.7 2.3E-16 7.9E-21 137.5 9.7 127 252-410 7-133 (139)
11 3d0s_A Transcriptional regulat 99.7 6.4E-16 2.2E-20 146.2 13.0 154 267-454 5-159 (227)
12 3fx3_A Cyclic nucleotide-bindi 99.7 6.3E-16 2.2E-20 147.2 13.1 156 264-453 7-163 (237)
13 1orq_C Potassium channel; volt 99.6 1.3E-15 4.3E-20 144.6 14.6 57 142-198 164-220 (223)
14 1wgp_A Probable cyclic nucleot 99.6 6E-16 2E-20 134.3 10.7 118 268-399 6-125 (137)
15 1zyb_A Transcription regulator 99.6 1.6E-15 5.3E-20 144.4 14.4 154 267-453 17-173 (232)
16 2pqq_A Putative transcriptiona 99.6 1.4E-15 4.7E-20 133.5 12.4 116 267-410 4-120 (149)
17 3dv8_A Transcriptional regulat 99.6 1.6E-15 5.5E-20 142.4 13.4 155 268-456 3-160 (220)
18 3iwz_A CAP-like, catabolite ac 99.6 2.4E-15 8.3E-20 142.2 14.4 154 267-453 10-169 (230)
19 3dkw_A DNR protein; CRP-FNR, H 99.6 1.6E-15 5.5E-20 143.2 11.7 151 267-453 8-162 (227)
20 3idb_B CAMP-dependent protein 99.6 3.5E-15 1.2E-19 133.5 13.3 117 261-400 31-147 (161)
21 3gyd_A CNMP-BD protein, cyclic 99.6 2.1E-15 7.3E-20 138.8 11.9 137 246-410 13-154 (187)
22 3e97_A Transcriptional regulat 99.6 2.7E-15 9.1E-20 142.3 12.4 154 267-456 5-160 (231)
23 2gau_A Transcriptional regulat 99.6 2.9E-15 9.8E-20 142.1 12.3 148 272-453 14-162 (232)
24 4h33_A LMO2059 protein; bilaye 99.6 1.1E-15 3.7E-20 133.5 8.2 92 144-235 44-135 (137)
25 2z69_A DNR protein; beta barre 99.6 9.7E-15 3.3E-19 128.9 14.3 130 267-431 11-141 (154)
26 2ih3_C Voltage-gated potassium 99.6 5.1E-15 1.8E-19 126.6 11.7 60 142-201 60-119 (122)
27 3vou_A ION transport 2 domain 99.6 1.1E-14 3.6E-19 129.1 13.2 86 144-229 53-148 (148)
28 1vp6_A CNBD, cyclic-nucleotide 99.6 1.4E-14 4.9E-19 125.6 12.4 123 267-431 10-132 (138)
29 2fmy_A COOA, carbon monoxide o 99.6 4.7E-15 1.6E-19 139.5 9.9 146 268-454 4-149 (220)
30 3ryp_A Catabolite gene activat 99.6 1.9E-14 6.5E-19 134.1 13.3 147 274-453 2-149 (210)
31 3pna_A CAMP-dependent protein 99.6 2.2E-14 7.5E-19 127.3 12.8 110 264-400 34-143 (154)
32 2d93_A RAP guanine nucleotide 99.6 2.5E-15 8.6E-20 130.1 5.9 116 257-399 5-122 (134)
33 2oz6_A Virulence factor regula 99.5 4E-14 1.4E-18 131.5 12.8 145 279-453 1-146 (207)
34 1ft9_A Carbon monoxide oxidati 99.5 8.3E-15 2.8E-19 138.2 8.1 144 269-453 1-144 (222)
35 3shr_A CGMP-dependent protein 99.5 1.8E-14 6.2E-19 142.2 10.4 125 249-400 20-144 (299)
36 4ava_A Lysine acetyltransferas 99.5 1.2E-13 4E-18 138.5 14.8 114 267-410 12-126 (333)
37 3kcc_A Catabolite gene activat 99.5 8.9E-14 3.1E-18 134.7 12.9 144 277-453 55-199 (260)
38 3shr_A CGMP-dependent protein 99.5 1.3E-13 4.5E-18 135.9 14.2 119 264-410 153-273 (299)
39 1o5l_A Transcriptional regulat 99.5 6.9E-14 2.4E-18 131.1 9.3 149 273-454 4-153 (213)
40 3of1_A CAMP-dependent protein 99.5 3.2E-13 1.1E-17 128.7 13.7 113 266-410 5-117 (246)
41 3of1_A CAMP-dependent protein 99.4 2.9E-13 9.9E-18 129.0 11.4 109 265-399 122-230 (246)
42 3tnp_B CAMP-dependent protein 99.4 4.8E-13 1.7E-17 138.6 13.7 116 262-400 139-254 (416)
43 3eff_K Voltage-gated potassium 99.4 2.9E-13 1E-17 118.5 10.2 58 143-200 40-97 (139)
44 2qcs_B CAMP-dependent protein 99.4 9.8E-13 3.4E-17 128.9 14.2 109 264-399 35-143 (291)
45 2r9r_B Paddle chimera voltage 99.4 4.8E-13 1.6E-17 141.8 12.5 60 142-201 374-433 (514)
46 1o7f_A CAMP-dependent RAP1 gua 99.4 8.8E-14 3E-18 146.1 6.8 126 253-400 27-153 (469)
47 3e6c_C CPRK, cyclic nucleotide 99.4 2.3E-13 7.8E-18 130.7 9.0 145 272-453 13-158 (250)
48 3la7_A Global nitrogen regulat 99.4 1.3E-12 4.5E-17 124.9 14.0 142 281-454 30-175 (243)
49 2qcs_B CAMP-dependent protein 99.4 1.4E-12 4.8E-17 127.8 14.3 120 264-410 153-273 (291)
50 4din_B CAMP-dependent protein 99.4 1.1E-12 3.8E-17 134.3 11.0 117 262-399 242-358 (381)
51 2bgc_A PRFA; bacterial infecti 99.4 2.3E-12 8E-17 122.7 12.3 145 277-454 2-150 (238)
52 4din_B CAMP-dependent protein 99.4 8.3E-13 2.8E-17 135.2 8.5 109 264-399 126-234 (381)
53 2q67_A Potassium channel prote 99.4 7.4E-12 2.5E-16 105.5 12.7 60 143-202 49-108 (114)
54 3tnp_B CAMP-dependent protein 99.3 3.4E-12 1.2E-16 132.2 11.6 117 267-399 266-382 (416)
55 1o7f_A CAMP-dependent RAP1 gua 99.3 4.5E-12 1.5E-16 133.0 11.4 116 264-410 333-450 (469)
56 4f7z_A RAP guanine nucleotide 99.3 3.2E-12 1.1E-16 146.5 10.6 123 257-400 31-153 (999)
57 2k1e_A Water soluble analogue 99.3 1.3E-12 4.4E-17 108.2 3.8 60 143-202 40-99 (103)
58 3b02_A Transcriptional regulat 99.3 1.9E-11 6.4E-16 112.7 10.5 119 294-453 2-121 (195)
59 3cf6_E RAP guanine nucleotide 99.2 2.7E-11 9.2E-16 132.9 11.4 126 248-400 13-140 (694)
60 3ouf_A Potassium channel prote 99.2 1.1E-10 3.8E-15 95.3 11.8 55 144-198 33-87 (97)
61 3ldc_A Calcium-gated potassium 99.2 5.7E-11 2E-15 93.9 7.8 54 143-196 28-81 (82)
62 4f7z_A RAP guanine nucleotide 99.2 1.2E-10 4.2E-15 133.4 13.4 111 264-400 333-445 (999)
63 2zcw_A TTHA1359, transcription 99.1 5.9E-11 2E-15 109.8 8.1 125 287-453 1-128 (202)
64 3pjs_K KCSA, voltage-gated pot 99.1 4.8E-12 1.7E-16 114.1 -2.6 62 142-203 66-127 (166)
65 1xl4_A Inward rectifier potass 99.0 1E-09 3.6E-14 107.9 10.2 56 143-198 82-137 (301)
66 1p7b_A Integral membrane chann 99.0 6.3E-10 2.1E-14 110.7 7.4 57 143-199 96-152 (333)
67 3um7_A Potassium channel subfa 98.9 3.3E-09 1.1E-13 104.0 10.2 57 143-199 115-171 (309)
68 2qks_A KIR3.1-prokaryotic KIR 98.8 8.5E-09 2.9E-13 102.2 7.8 57 143-199 78-134 (321)
69 3sya_A G protein-activated inw 98.7 8.3E-08 2.8E-12 95.2 13.0 59 143-201 91-151 (340)
70 4gx0_A TRKA domain protein; me 98.7 7.1E-08 2.4E-12 103.6 11.8 53 144-196 52-105 (565)
71 3um7_A Potassium channel subfa 98.6 1.9E-08 6.6E-13 98.6 5.4 60 144-203 225-290 (309)
72 3ukm_A Potassium channel subfa 98.6 4.9E-08 1.7E-12 94.3 8.1 55 143-197 93-147 (280)
73 3spc_A Inward-rectifier K+ cha 98.5 3.6E-07 1.2E-11 90.8 11.7 58 143-200 94-153 (343)
74 3ukm_A Potassium channel subfa 98.5 6E-08 2.1E-12 93.7 5.2 56 143-198 201-263 (280)
75 3rvy_A ION transport protein; 98.5 1.2E-07 4.2E-12 92.7 7.2 61 141-201 178-244 (285)
76 1lnq_A MTHK channels, potassiu 98.4 2E-08 6.7E-13 100.7 -1.9 56 144-199 46-101 (336)
77 4dxw_A Navrh, ION transport pr 96.8 0.0056 1.9E-07 57.3 10.0 54 143-196 165-223 (229)
78 3fjs_A Uncharacterized protein 64.6 21 0.00071 28.5 7.3 67 291-390 38-104 (114)
79 3rns_A Cupin 2 conserved barre 64.1 21 0.00072 32.5 8.1 68 291-391 39-106 (227)
80 3kg2_A Glutamate receptor 2; I 59.7 9.4 0.00032 41.8 5.7 55 143-198 563-617 (823)
81 2ozj_A Cupin 2, conserved barr 56.5 26 0.00088 27.6 6.5 42 296-356 45-86 (114)
82 1yhf_A Hypothetical protein SP 54.5 38 0.0013 26.5 7.2 67 292-391 43-109 (115)
83 1orq_C Potassium channel; volt 49.3 23 0.00078 32.0 5.6 17 56-72 139-155 (223)
84 2pfw_A Cupin 2, conserved barr 48.5 49 0.0017 25.8 7.0 67 292-391 37-103 (116)
85 3lwc_A Uncharacterized protein 48.0 29 0.001 28.1 5.5 44 294-357 45-88 (119)
86 1o5u_A Novel thermotoga mariti 47.1 45 0.0015 26.1 6.3 46 292-357 34-79 (101)
87 3h8u_A Uncharacterized conserv 44.4 23 0.00078 28.4 4.3 48 291-356 41-89 (125)
88 2gu9_A Tetracenomycin polyketi 44.1 25 0.00086 27.2 4.5 46 292-356 24-72 (113)
89 1yfu_A 3-hydroxyanthranilate-3 42.3 21 0.00071 31.3 3.8 61 308-397 54-115 (174)
90 1v70_A Probable antibiotics sy 42.2 31 0.0011 26.0 4.7 46 292-356 31-77 (105)
91 4e2g_A Cupin 2 conserved barre 41.7 28 0.00096 27.9 4.5 47 291-356 43-89 (126)
92 1dgw_A Canavalin; duplicated s 38.0 21 0.00073 31.2 3.3 51 291-356 43-93 (178)
93 2r9r_B Paddle chimera voltage 37.9 37 0.0013 35.2 5.6 18 246-263 469-486 (514)
94 3bcw_A Uncharacterized protein 36.5 19 0.00066 29.5 2.6 43 296-357 56-98 (123)
95 3es4_A Uncharacterized protein 36.2 23 0.00079 28.9 3.0 43 296-357 49-91 (116)
96 1ors_C Potassium channel; volt 35.8 23 0.00078 29.4 3.0 7 25-31 102-108 (132)
97 3ibm_A Cupin 2, conserved barr 33.4 40 0.0014 29.0 4.3 45 293-356 60-104 (167)
98 2fqp_A Hypothetical protein BP 32.9 18 0.00062 27.8 1.8 47 293-356 22-69 (97)
99 1zvf_A 3-hydroxyanthranilate 3 32.2 27 0.00093 30.6 2.9 91 282-397 12-117 (176)
100 4b29_A Dimethylsulfoniopropion 32.2 58 0.002 29.6 5.2 43 296-356 139-181 (217)
101 2b8m_A Hypothetical protein MJ 31.8 41 0.0014 26.5 3.8 31 295-325 33-63 (117)
102 2bnm_A Epoxidase; oxidoreducta 31.5 38 0.0013 29.7 3.9 47 295-356 123-172 (198)
103 3d82_A Cupin 2, conserved barr 30.4 79 0.0027 23.7 5.3 51 309-392 50-100 (102)
104 3rns_A Cupin 2 conserved barre 29.9 96 0.0033 27.9 6.5 68 291-391 155-223 (227)
105 2kyh_A KVAP, voltage-gated pot 29.7 19 0.00064 30.7 1.4 23 13-36 106-128 (147)
106 3d0j_A Uncharacterized protein 29.6 36 0.0012 28.7 3.1 67 303-394 44-110 (140)
107 2opk_A Hypothetical protein; p 29.5 42 0.0014 26.6 3.5 33 307-356 51-83 (112)
108 2kyh_A KVAP, voltage-gated pot 29.4 37 0.0013 28.7 3.3 10 22-31 117-126 (147)
109 2f4p_A Hypothetical protein TM 28.9 71 0.0024 26.6 5.1 45 293-356 52-97 (147)
110 3es1_A Cupin 2, conserved barr 28.4 37 0.0013 29.7 3.2 46 293-356 83-128 (172)
111 2q30_A Uncharacterized protein 28.3 76 0.0026 24.2 4.9 46 293-356 37-84 (110)
112 1vj2_A Novel manganese-contain 27.5 47 0.0016 26.7 3.6 44 294-356 53-96 (126)
113 3jzv_A Uncharacterized protein 26.7 37 0.0013 29.3 2.9 44 294-356 58-101 (166)
114 3kgz_A Cupin 2 conserved barre 26.3 38 0.0013 28.9 2.8 43 295-356 50-92 (156)
115 3i7d_A Sugar phosphate isomera 26.2 41 0.0014 28.8 3.0 45 293-356 47-93 (163)
116 3lag_A Uncharacterized protein 26.1 23 0.00078 27.6 1.2 37 291-327 19-56 (98)
117 3l2h_A Putative sugar phosphat 25.9 39 0.0013 28.5 2.9 46 292-356 49-96 (162)
118 1o4t_A Putative oxalate decarb 24.2 57 0.002 26.5 3.5 45 293-356 61-106 (133)
119 4i4a_A Similar to unknown prot 24.2 57 0.0019 26.0 3.5 44 294-356 39-82 (128)
120 1y9q_A Transcriptional regulat 24.1 83 0.0028 27.2 4.8 44 294-356 109-154 (192)
121 1uij_A Beta subunit of beta co 24.0 47 0.0016 33.4 3.4 52 290-356 50-101 (416)
122 3bu7_A Gentisate 1,2-dioxygena 23.9 40 0.0014 33.7 2.8 47 292-356 126-172 (394)
123 2qnk_A 3-hydroxyanthranilate 3 23.4 57 0.002 30.8 3.6 63 306-397 48-110 (286)
124 2i45_A Hypothetical protein; n 22.5 31 0.001 26.8 1.4 68 297-396 36-103 (107)
125 2ea7_A 7S globulin-1; beta bar 21.9 54 0.0018 33.2 3.4 53 289-356 61-113 (434)
126 1sfn_A Conserved hypothetical 21.7 70 0.0024 29.3 3.9 49 290-357 166-215 (246)
127 1lr5_A Auxin binding protein 1 21.2 66 0.0023 27.1 3.4 54 293-356 45-98 (163)
128 3h7j_A Bacilysin biosynthesis 20.9 81 0.0028 28.8 4.2 34 291-324 36-69 (243)
129 2oa2_A BH2720 protein; 1017534 20.7 1.1E+02 0.0036 25.4 4.6 34 293-326 47-81 (148)
130 4axo_A EUTQ, ethanolamine util 20.7 68 0.0023 27.3 3.3 30 308-356 83-112 (151)
131 3cew_A Uncharacterized cupin p 20.2 58 0.002 25.9 2.7 45 293-356 30-76 (125)
132 1fi2_A Oxalate oxidase, germin 20.2 1.4E+02 0.0048 26.2 5.5 55 291-356 74-129 (201)
133 2cav_A Protein (canavalin); vi 20.0 60 0.0021 32.9 3.3 52 290-356 87-138 (445)
No 1
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.97 E-value=7.3e-30 Score=238.95 Aligned_cols=181 Identities=24% Similarity=0.335 Sum_probs=163.7
Q ss_pred HhhhhhhHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHhhhccHHHHHHHHHHHHHHHhhhchhh
Q 038306 197 QSKTIRSEEMRLKVREIEQRMPFQKLSGNLQQQIKKYQQYIWRETKGVDVENLISNLPRDLRRNIKRELCLDLLKKVEEF 276 (494)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~ri~~y~~~~~~~~~~~~e~~il~~Lp~~Lr~ei~~~l~~~~l~~i~~F 276 (494)
++++++..+|+++|+.+++||+.++||.+|+.||++||+|.|. .++.+++++++.||+.||.++..+++.+++.++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 4678899999999999999999999999999999999999997 478899999999999999999999999999999999
Q ss_pred hcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 277 KKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 277 ~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
.+++++++..++..++.+.|+||++|+++|+.++.+|||.+|.|+++..+ |. ...+.+|++|
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~-g~-----------------~~~l~~G~~f 142 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKG-NK-----------------EMKLSDGSYF 142 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECTT-SC-----------------CEEEETTCEE
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEECC-Ce-----------------EEEEcCCCEe
Confidence 99999999999999999999999999999999999999999999998643 22 3367999999
Q ss_pred chhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCCh
Q 038306 357 GEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSE 410 (494)
Q Consensus 357 Ge~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~ 410 (494)
|+.+++. + .+++++++|.++|+++.|++++|.++ +..+|.
T Consensus 143 Ge~~~~~---~------~~~~~~v~a~~~~~l~~i~~~~f~~l-----l~~~p~ 182 (202)
T 3bpz_A 143 GEICLLT---R------GRRTASVRADTYCRLYSLSVDNFNEV-----LEEYPM 182 (202)
T ss_dssp CHHHHHH---C------SBCSSEEEESSCEEEEEEEHHHHHHH-----HHHSGG
T ss_pred ccHHHhc---C------CCcccEEEEeeEEEEEEEEHHHHHHH-----HHHCHH
Confidence 9998853 1 23678999999999999999999999 777775
No 2
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.97 E-value=3.7e-30 Score=240.10 Aligned_cols=181 Identities=22% Similarity=0.341 Sum_probs=165.4
Q ss_pred hhhhhhHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHhhhccHHHHHHHHHHHHHHHhhhchhhh
Q 038306 198 SKTIRSEEMRLKVREIEQRMPFQKLSGNLQQQIKKYQQYIWRETKGVDVENLISNLPRDLRRNIKRELCLDLLKKVEEFK 277 (494)
Q Consensus 198 ~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~ri~~y~~~~~~~~~~~~e~~il~~Lp~~Lr~ei~~~l~~~~l~~i~~F~ 277 (494)
+++++..+|+++|+.+++||+.+++|.+|+.||++||+|.|+ .++.+++++++.||+.||.++..+++.+++.++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 578889999999999999999999999999999999999997 4688899999999999999999999999999999999
Q ss_pred cCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCeec
Q 038306 278 KLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFCG 357 (494)
Q Consensus 278 ~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fG 357 (494)
+++++++..++..++.+.|.||++|+++|+.++.+|||.+|.|+++..+ |+ ++..+.+|++||
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~-g~----------------~~~~l~~G~~fG 143 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSD-GV----------------IATSLSDGSYFG 143 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTT-SC----------------EEEEECTTCEES
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEecC-Ce----------------EEEEecCCCEec
Confidence 9999999999999999999999999999999999999999999999743 32 288999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCCh
Q 038306 358 EELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSE 410 (494)
Q Consensus 358 e~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~ 410 (494)
+.+++. + .+++++++|.++|+++.|++++|.++ +..+|.
T Consensus 144 e~~~~~---~------~~~~~~~~a~~~~~l~~i~~~~f~~l-----l~~~p~ 182 (198)
T 2ptm_A 144 EICLLT---R------ERRVASVKCETYCTLFSLSVQHFNQV-----LDEFPA 182 (198)
T ss_dssp CHHHHH---S------SCCSSEEEESSCEEEEEEEHHHHHHH-----HHHCHH
T ss_pred hHHHcC---C------CccceEEEEeeEEEEEEEeHHHHHHH-----HHHChH
Confidence 998853 1 23678999999999999999999999 777775
No 3
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=5.6e-31 Score=248.33 Aligned_cols=201 Identities=20% Similarity=0.343 Sum_probs=168.4
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHhhhccHHHHHHHHHHHHHHHhhh
Q 038306 193 QIYLQSKTIRSEEMRLKVREIEQRMPFQKLSGNLQQQIKKYQQYIWRETKGVDVENLISNLPRDLRRNIKRELCLDLLKK 272 (494)
Q Consensus 193 ~~il~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~ri~~y~~~~~~~~~~~~e~~il~~Lp~~Lr~ei~~~l~~~~l~~ 272 (494)
++|+++++++..+|+++|+.+++||+.+++|++||.||++||+|.|..+++.+++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 468899999999999999999999999999999999999999999998889999999999999999999999998877 7
Q ss_pred chhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCC
Q 038306 273 VEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKD 352 (494)
Q Consensus 273 i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~ 352 (494)
+|+|++++++++..++..++++.|.||++|+++||.++.+|||.+|.|+++.. + . ++..+.+
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~--~-~---------------~~~~l~~ 141 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKD--N-T---------------VLAILGK 141 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESS--S-C---------------EEEEECT
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEEC--C-e---------------EEEEecC
Confidence 99999999999999999999999999999999999999999999999999862 2 1 2889999
Q ss_pred CCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHHHHHHHHHHHH
Q 038306 353 GDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAARVIQDAWRRYH 432 (494)
Q Consensus 353 G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~ 432 (494)
|++||+.+++ .+.. ++++++++|.++|+++.|++++|.++ +..+|. ++..+.+....++.
T Consensus 142 G~~fGe~~~~---~~~~----~~~~~~v~a~~~~~l~~i~~~~f~~l-----l~~~p~--------~~~~~~~~l~~~l~ 201 (212)
T 3ukn_A 142 GDLIGSDSLT---KEQV----IKTNANVKALTYCDLQYISLKGLREV-----LRLYPE--------YAQKFVSEIQHDLT 201 (212)
T ss_dssp TCEEECSCCS---SSSC----CBBCSEEEESSCEEEEEEEHHHHHHH-----HHHCHH--------HHHHHHHHHHHHEE
T ss_pred CCCcCcHHhc---cCCC----CCcceEEEEcccEEEEEEeHHHHHHH-----HHHChH--------HHHHHHHHHHHhhc
Confidence 9999999763 2210 14788999999999999999999999 777775 44556555555443
No 4
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.96 E-value=1.2e-30 Score=265.91 Aligned_cols=178 Identities=22% Similarity=0.287 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCC
Q 038306 141 PQKLLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQIYLQSKTIRSEEMRLKVREIEQRMPFQ 220 (494)
Q Consensus 141 ~~~Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~~~~~~~~~~~~~~~i~~~m~~~ 220 (494)
+..|..|+||+++|||||||||+.|.|..++++++++|++|.+++++.+|.+++.+.+..++
T Consensus 159 f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~------------------ 220 (355)
T 3beh_A 159 FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRR------------------ 220 (355)
T ss_dssp HSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
T ss_pred cccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 34688999999999999999999999999999999999999999999999998876532110
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCCCHHHHhhhccHHHHHHHHHHHHHHHhhhchhhhcCcHHHHHHHHhccceeeecCCC
Q 038306 221 KLSGNLQQQIKKYQQYIWRETKGVDVENLISNLPRDLRRNIKRELCLDLLKKVEEFKKLDEATLDALCDCVKPAFFIERA 300 (494)
Q Consensus 221 ~lp~~L~~ri~~y~~~~~~~~~~~~e~~il~~Lp~~Lr~ei~~~l~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge 300 (494)
+++. ...+.++++++|++++++.++.++..++.+.|+|||
T Consensus 221 ----------~~~~------------------------------~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge 260 (355)
T 3beh_A 221 ----------GDFV------------------------------RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGA 260 (355)
T ss_dssp ----------HHHH------------------------------HHHC--------------------------------
T ss_pred ----------Hhhc------------------------------ccchhhhcccccccCCHHHHHHHHHhceEEEECCCC
Confidence 0000 024678889999999999999999999999999999
Q ss_pred EEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEE
Q 038306 301 HIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTI 380 (494)
Q Consensus 301 ~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv 380 (494)
.|+++||.++++|||.+|.|+++..+ ...+.+|++||+.+++ .+ .++++++
T Consensus 261 ~I~~~G~~~~~ly~I~~G~v~v~~~~--------------------~~~l~~G~~fGe~~~l---~~------~~~~~~~ 311 (355)
T 3beh_A 261 VICRIGEPGDRMFFVVEGSVSVATPN--------------------PVELGPGAFFGEMALI---SG------EPRSATV 311 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeCCCcCceEEEEEeeEEEEEECC--------------------eeEECCCCEEeehHHh---CC------CCcceEE
Confidence 99999999999999999999998643 2367899999999774 22 2367899
Q ss_pred EEcceEEEEEeCHHHHHHHHhhcccccCCh
Q 038306 381 QALTKVEAFALMADDLKNVFINHQLCTYSE 410 (494)
Q Consensus 381 ~A~~~~~l~~is~~df~~ll~~~~~~~~~~ 410 (494)
+|.++|+++.|++++|.++ ++.+|+
T Consensus 312 ~A~~~~~l~~i~~~~f~~l-----l~~~p~ 336 (355)
T 3beh_A 312 SAATTVSLLSLHSADFQML-----CSSSPE 336 (355)
T ss_dssp ------------------------------
T ss_pred EECccEEEEEEeHHHHHHH-----HHHCHH
Confidence 9999999999999999999 777775
No 5
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.76 E-value=2.2e-18 Score=153.73 Aligned_cols=135 Identities=24% Similarity=0.326 Sum_probs=111.2
Q ss_pred HHHHhhhccHHHHHHHHHHHHHHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEee
Q 038306 246 VENLISNLPRDLRRNIKRELCLDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTS 325 (494)
Q Consensus 246 e~~il~~Lp~~Lr~ei~~~l~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~ 325 (494)
.+++++.||+.||.++..+++.++++++|+|++++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|+++..
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~ 84 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD 84 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC
Confidence 45599999999999999999999999999999999999999999999999999999999999999999999999999862
Q ss_pred cCCcccccccccCCCCCccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhccc
Q 038306 326 KSRASGSARFNNHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQL 405 (494)
Q Consensus 326 ~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~ 405 (494)
+ .++..+.+|++||+.+++ ... ..++.++++|.++|+++.|++++|.++ +
T Consensus 85 ~------------------~~~~~~~~G~~fG~~~~~---~~~----~~~~~~~~~a~~~~~v~~i~~~~~~~l-----~ 134 (160)
T 4f8a_A 85 D------------------EVVAILGKGDVFGDVFWK---EAT----LAQSCANVRALTYCDLHVIKRDALQKV-----L 134 (160)
T ss_dssp T------------------EEEEEEETTCEEECCTTT---CSS----CCBCSSEEEESSCEEEEEEEHHHHHHH-----H
T ss_pred C------------------EEEEEecCCCEeCcHHHh---cCc----ccceEEEEEECCceEEEEEcHHHHHHH-----H
Confidence 1 128899999999999773 211 024678999999999999999999999 6
Q ss_pred ccCCh
Q 038306 406 CTYSE 410 (494)
Q Consensus 406 ~~~~~ 410 (494)
+.+|.
T Consensus 135 ~~~p~ 139 (160)
T 4f8a_A 135 EFYTA 139 (160)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 66664
No 6
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.70 E-value=6.7e-17 Score=149.11 Aligned_cols=154 Identities=11% Similarity=0.095 Sum_probs=117.6
Q ss_pred HHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeec-CCcccccccccCCCCCccc
Q 038306 267 LDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSK-SRASGSARFNNHRDNDNKS 345 (494)
Q Consensus 267 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~t~~f~~~~~~~~e~ 345 (494)
..++++++.|.+++++.++.+...++.+.|++|++|+++|++++.+|||.+|.|+++..+ +| ++.
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G--------------~e~ 71 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKG--------------IEQ 71 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTS--------------CEE
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCC--------------CEE
Confidence 567888999999999999999999999999999999999999999999999999999754 33 344
Q ss_pred cccccCCCCeechh-hhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHHHH
Q 038306 346 KKDHLKDGDFCGEE-LVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAARVI 424 (494)
Q Consensus 346 ~~~~l~~G~~fGe~-~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 424 (494)
++.++.+|++||+. +++. . .++.++++|+++|+++.|++++|.++ +..+|. +. ......+
T Consensus 72 ~~~~~~~g~~~ge~~~~~~---~------~~~~~~~~a~~~~~v~~i~~~~~~~l-----~~~~p~--~~---~~~~~~~ 132 (194)
T 3dn7_A 72 TTQFAIENWWLSDYMAFQK---Q------QPADFYIQSVENCELLSITYTEQENL-----FERIPA--LE---RYFRLVY 132 (194)
T ss_dssp EEEEEETTCEECCHHHHHH---T------CBCSSEEEESSCEEEEEEEHHHHHHH-----HHHCTT--HH---HHHHHHH
T ss_pred EEEEccCCcEEeehHHHhc---C------CCCceEEEEECCEEEEEEeHHHHHHH-----HHhCHH--HH---HHHHHHH
Confidence 58899999999987 4432 1 23567999999999999999999999 666665 33 3445555
Q ss_pred HHHHHHHHhhhccchhhhhccchhhhhhhh
Q 038306 425 QDAWRRYHTRRNSTRSTGEIDSSLQVAISQ 454 (494)
Q Consensus 425 q~~~~~~~~rr~~~~~~~~~e~r~~~~~~~ 454 (494)
........+ +...+...++++|+++.+..
T Consensus 133 ~~~l~~~~~-~~~~l~~~~~~~Rl~~~L~~ 161 (194)
T 3dn7_A 133 QKSFAAAQL-RSKFQHMYSKEEQYHNFSSR 161 (194)
T ss_dssp HHHHHHHHH-HHHHHHHC------------
T ss_pred HHHHHHHHH-HHHHHhcCCHHHHHHHHHHH
Confidence 666666677 88888899999999987754
No 7
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.66 E-value=3.6e-16 Score=139.11 Aligned_cols=64 Identities=8% Similarity=0.347 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 038306 142 QKLLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQIYLQSKTIRSEE 205 (494)
Q Consensus 142 ~~Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~~~~~~~~ 205 (494)
..|..|+||+++|+|||||||+.|.|..+++++++.+++|+.++++++|.+++.+.+...+..+
T Consensus 83 ~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~~ 146 (155)
T 2a9h_A 83 ISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRG 146 (155)
T ss_dssp TSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC----
T ss_pred CcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999998876654433
No 8
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.66 E-value=4.7e-16 Score=145.69 Aligned_cols=151 Identities=15% Similarity=0.156 Sum_probs=119.9
Q ss_pred hhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeec-CCcccccccccCCCCCcccccc
Q 038306 270 LKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSK-SRASGSARFNNHRDNDNKSKKD 348 (494)
Q Consensus 270 l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~t~~f~~~~~~~~e~~~~ 348 (494)
|+++|+|++++++.++.+...++.+.|++|++|+++|+.++++|||.+|.|+++..+ +| ++.++.
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g--------------~~~~~~ 66 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGG--------------QERTLA 66 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSS--------------CEEEEE
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCC--------------CEEEEE
Confidence 467899999999999999999999999999999999999999999999999999753 33 344589
Q ss_pred ccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHHHHHHHH
Q 038306 349 HLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAARVIQDAW 428 (494)
Q Consensus 349 ~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 428 (494)
.+.+|++||+.+++. + .++.++++|.++|+++.|++++|.++ +..+|. +. ......+....
T Consensus 67 ~~~~g~~~G~~~~~~---~------~~~~~~~~a~~~~~v~~i~~~~~~~l-----~~~~p~--~~---~~~~~~l~~~~ 127 (216)
T 4ev0_A 67 LLGPGELFGEMSLLD---E------GERSASAVAVEDTELLALFREDYLAL-----IRRLPL--VA---HNLAALLARRL 127 (216)
T ss_dssp EECTTCEECHHHHHH---C------CBCSSEEEESSSEEEEEEEHHHHHHH-----HHHCHH--HH---HHHHHHHHHHH
T ss_pred EecCCCEEeehhhcC---C------CCcceEEEEcCCEEEEEEcHHHHHHH-----HHHCcH--HH---HHHHHHHHHHH
Confidence 999999999998752 2 13567999999999999999999999 655654 33 22333344444
Q ss_pred HHHHhhhccchhhhhccchhhhhhhh
Q 038306 429 RRYHTRRNSTRSTGEIDSSLQVAISQ 454 (494)
Q Consensus 429 ~~~~~rr~~~~~~~~~e~r~~~~~~~ 454 (494)
....+ +...+...++++|+++.+..
T Consensus 128 ~~~~~-~~~~~~~~~~~~Rl~~~L~~ 152 (216)
T 4ev0_A 128 READL-ELDLLSFEEARNRVAYALLK 152 (216)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHhcCCHHHHHHHHHHH
Confidence 44555 77777888899999977753
No 9
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.66 E-value=6.7e-16 Score=134.50 Aligned_cols=130 Identities=12% Similarity=0.149 Sum_probs=105.2
Q ss_pred HHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeec-CCcccccccccCCCCCcccc
Q 038306 268 DLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSK-SRASGSARFNNHRDNDNKSK 346 (494)
Q Consensus 268 ~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~t~~f~~~~~~~~e~~ 346 (494)
+.++++|+|++++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+ +| ++.+
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g--------------~~~~ 71 (142)
T 3mdp_A 6 ERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGA--------------GSAA 71 (142)
T ss_dssp TGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC----------------------
T ss_pred HHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCC--------------CceE
Confidence 46889999999999999999999999999999999999999999999999999999653 22 2344
Q ss_pred ---ccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHHH
Q 038306 347 ---KDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAARV 423 (494)
Q Consensus 347 ---~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~~ 423 (494)
+..+.+|++||+.+++ .. .++.++++|.++|+++.|++++|.++ +..+|. ++..+
T Consensus 72 ~~~~~~~~~G~~fG~~~~~---~~------~~~~~~~~a~~~~~~~~i~~~~~~~l-----~~~~p~--------~~~~l 129 (142)
T 3mdp_A 72 NSTVCSVVPGAIFGVSSLI---KP------YHYTSSARATKPVRVVDINGARLREM-----SENNQA--------LGQVL 129 (142)
T ss_dssp -CEEEEECTTCEECGGGSS---TT------CBCSSEEEESSCEEEEEEEHHHHHHH-----HHHCHH--------HHHHH
T ss_pred eeeEEEecCCCEechHHHc---CC------CCceEEEEECCcEEEEEEeHHHHHHH-----HHHChH--------HHHHH
Confidence 7889999999999773 22 24677999999999999999999999 666665 44555
Q ss_pred HHHHHHHHHh
Q 038306 424 IQDAWRRYHT 433 (494)
Q Consensus 424 ~q~~~~~~~~ 433 (494)
++.....+.+
T Consensus 130 ~~~l~~~l~~ 139 (142)
T 3mdp_A 130 MNNVAAAVLA 139 (142)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 10
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.66 E-value=2.3e-16 Score=137.55 Aligned_cols=127 Identities=17% Similarity=0.253 Sum_probs=110.2
Q ss_pred hccHHHHHHHHHHHHHHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCccc
Q 038306 252 NLPRDLRRNIKRELCLDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASG 331 (494)
Q Consensus 252 ~Lp~~Lr~ei~~~l~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~ 331 (494)
++|..+|.+.......+++.++++|++++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|++.. + |.
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~-g~-- 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-E-GV-- 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE-T-TE--
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE-C-CE--
Confidence 5788888888888899999999999999999999999999999999999999999999999999999999964 2 22
Q ss_pred ccccccCCCCCccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCCh
Q 038306 332 SARFNNHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSE 410 (494)
Q Consensus 332 t~~f~~~~~~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~ 410 (494)
++..+.+|++||+.+++. . .++.++++|.++|+++.|++++|.++ +..+|.
T Consensus 83 --------------~~~~~~~G~~fGe~~~l~---~------~~~~~~~~a~~~~~v~~i~~~~~~~l-----~~~~p~ 133 (139)
T 3ocp_A 83 --------------KLCTMGPGKVFGELAILY---N------CTRTATVKTLVNVKLWAIDRQCFQTI-----MMRTGL 133 (139)
T ss_dssp --------------EEEEECTTCEESCHHHHH---C------CCCSSEEEESSCEEEEEEEHHHHHHH-----HTC---
T ss_pred --------------EEEEeCCCCEeccHHHHC---C------CCcceEEEECcceEEEEEcHHHHHHH-----HhhChH
Confidence 288899999999998753 1 13677999999999999999999999 555554
No 11
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.65 E-value=6.4e-16 Score=146.18 Aligned_cols=154 Identities=18% Similarity=0.244 Sum_probs=123.9
Q ss_pred HHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeec-CCcccccccccCCCCCccc
Q 038306 267 LDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSK-SRASGSARFNNHRDNDNKS 345 (494)
Q Consensus 267 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~t~~f~~~~~~~~e~ 345 (494)
.+.++++|+|.+++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +| ++.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g--------------~~~ 70 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDG--------------REN 70 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTS--------------CEE
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCC--------------cEE
Confidence 457899999999999999999999999999999999999999999999999999999764 33 344
Q ss_pred cccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHHHHH
Q 038306 346 KKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAARVIQ 425 (494)
Q Consensus 346 ~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~~~q 425 (494)
++..+.+|++||+.+++ .+. ++.++++|.++|+++.|++++|.++ +..+|. +. ......+.
T Consensus 71 ~~~~~~~G~~~G~~~~~---~~~------~~~~~~~A~~~~~v~~i~~~~~~~l-----~~~~p~--~~---~~~~~~l~ 131 (227)
T 3d0s_A 71 LLTIMGPSDMFGELSIF---DPG------PRTSSATTITEVRAVSMDRDALRSW-----IADRPE--IS---EQLLRVLA 131 (227)
T ss_dssp EEEEECTTCEESCHHHH---SCS------CCSSEEEESSCEEEEEEEHHHHHHT-----TSSCHH--HH---HHHHHHHH
T ss_pred EEEEecCCCEEeeHHHc---CCC------CceeEEEEcccEEEEEEeHHHHHHH-----HHHChH--HH---HHHHHHHH
Confidence 58899999999999874 222 3667999999999999999999998 666654 33 22333334
Q ss_pred HHHHHHHhhhccchhhhhccchhhhhhhh
Q 038306 426 DAWRRYHTRRNSTRSTGEIDSSLQVAISQ 454 (494)
Q Consensus 426 ~~~~~~~~rr~~~~~~~~~e~r~~~~~~~ 454 (494)
.......+ +...+...++++|+++.|-.
T Consensus 132 ~~l~~~~~-~~~~l~~~~~~~Rl~~~L~~ 159 (227)
T 3d0s_A 132 RRLRRTNN-NLADLIFTDVPGRVAKQLLQ 159 (227)
T ss_dssp HHHHHHHH-HHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHhcCCHHHHHHHHHHH
Confidence 44444555 67777888899999877653
No 12
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.65 E-value=6.3e-16 Score=147.17 Aligned_cols=156 Identities=10% Similarity=0.048 Sum_probs=124.3
Q ss_pred HHHHHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeec-CCcccccccccCCCCC
Q 038306 264 ELCLDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSK-SRASGSARFNNHRDND 342 (494)
Q Consensus 264 ~l~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~t~~f~~~~~~~ 342 (494)
....+.++++|+|.+++++.++.+...++.+.|++|++|+++|+.++.+|||.+|.|+++..+ +|
T Consensus 7 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G-------------- 72 (237)
T 3fx3_A 7 EAQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTG-------------- 72 (237)
T ss_dssp HHHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTS--------------
T ss_pred HHHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCC--------------
Confidence 344678999999999999999999999999999999999999999999999999999999754 33
Q ss_pred ccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHH
Q 038306 343 NKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAAR 422 (494)
Q Consensus 343 ~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~ 422 (494)
++.++..+.+|++||+.+++. .. ++.++++|.++|+++.|++++|.++ +..+|. +. .....
T Consensus 73 ~~~~~~~~~~G~~~G~~~~~~---~~------~~~~~~~a~~~~~v~~i~~~~~~~l-----~~~~p~--~~---~~~~~ 133 (237)
T 3fx3_A 73 SEAVVSVFTRGESFGEAVALR---NT------PYPVSAEAVTPCEVMHIPSPVFVSL-----MRRDPE--IC---ISILA 133 (237)
T ss_dssp CEEEEEEEETTEEECHHHHHH---TC------CCSSEEEESSSEEEEEEEHHHHHHH-----HHHCHH--HH---HHHHH
T ss_pred CEEEEEEeCCCCEechHHHhc---CC------CCCceEEECCceEEEEEcHHHHHHH-----HHHCHH--HH---HHHHH
Confidence 344588999999999998752 21 3567999999999999999999999 655554 22 22222
Q ss_pred HHHHHHHHHHhhhccchhhhhccchhhhhhh
Q 038306 423 VIQDAWRRYHTRRNSTRSTGEIDSSLQVAIS 453 (494)
Q Consensus 423 ~~q~~~~~~~~rr~~~~~~~~~e~r~~~~~~ 453 (494)
.+........+ +...+...++++|+++.+-
T Consensus 134 ~l~~~l~~~~~-~~~~l~~~~~~~Rl~~~L~ 163 (237)
T 3fx3_A 134 TTFGHLHSLVA-QLEQLKAQTGAQRVAEFLL 163 (237)
T ss_dssp HHHHHHHHHHH-HHHHCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHhcCCHHHHHHHHHH
Confidence 33333444455 6777788889999886664
No 13
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.65 E-value=1.3e-15 Score=144.55 Aligned_cols=57 Identities=14% Similarity=0.369 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038306 142 QKLLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQIYLQS 198 (494)
Q Consensus 142 ~~Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~ 198 (494)
..|..|+||+++|+|||||||++|.|..++++++++|++|..++|+.+|.+++.+++
T Consensus 164 ~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 164 KSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp CSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999998874
No 14
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.64 E-value=6e-16 Score=134.32 Aligned_cols=118 Identities=49% Similarity=0.854 Sum_probs=97.6
Q ss_pred HHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccc
Q 038306 268 DLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKK 347 (494)
Q Consensus 268 ~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~ 347 (494)
++++++++|.+++++.++.++..++.+.|++|++|+++||.++.+|||.+|.|+++...+|+ +.++
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~--------------~~~~ 71 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR--------------SGFY 71 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCS--------------SSSS
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCc--------------ceee
Confidence 35788999999999999999999999999999999999999999999999999976444443 3336
Q ss_pred c--ccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHH
Q 038306 348 D--HLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNV 399 (494)
Q Consensus 348 ~--~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~l 399 (494)
. .+.+|++||+.++++.+...+...+++++++++|.++|+++.|++++|.++
T Consensus 72 ~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l 125 (137)
T 1wgp_A 72 NRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFV 125 (137)
T ss_dssp CEEECCTTCBSSTHHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHH
T ss_pred eeeeecCCCEecHHHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHH
Confidence 6 999999999998522234433222234678999999999999999999999
No 15
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.64 E-value=1.6e-15 Score=144.35 Aligned_cols=154 Identities=12% Similarity=0.127 Sum_probs=123.1
Q ss_pred HHHhhhchhhhcCcHHHHHHHHhc--cceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeec-CCcccccccccCCCCCc
Q 038306 267 LDLLKKVEEFKKLDEATLDALCDC--VKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSK-SRASGSARFNNHRDNDN 343 (494)
Q Consensus 267 ~~~l~~i~~F~~~s~~~l~~l~~~--l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~t~~f~~~~~~~~ 343 (494)
...+.++|+|.+++++.++.++.. ++.+.|++|++|+++|+.++.+|||.+|.|+++..+ +| +
T Consensus 17 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G--------------~ 82 (232)
T 1zyb_A 17 FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKEN--------------I 82 (232)
T ss_dssp HTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGG--------------S
T ss_pred HHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCC--------------C
Confidence 556889999999999999999998 999999999999999999999999999999998653 33 3
Q ss_pred cccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHHH
Q 038306 344 KSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAARV 423 (494)
Q Consensus 344 e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~~ 423 (494)
+.++..+.+|++||+.+++ ... +++.++++|+++|+++.|++++|.++ +..+|. +. ......
T Consensus 83 ~~~l~~~~~G~~fG~~~~~---~~~-----~~~~~~~~A~~~~~v~~i~~~~~~~l-----~~~~p~--~~---~~l~~~ 144 (232)
T 1zyb_A 83 YTVIEQIEAPYLIEPQSLF---GMN-----TNYASSYVAHTEVHTVCISKAFVLSD-----LFRYDI--FR---LNYMNI 144 (232)
T ss_dssp CEEEEEEESSEEECGGGGS---SSC-----CBCSSEEEESSCEEEEEEEHHHHHHT-----GGGSHH--HH---HHHHHH
T ss_pred EEEEEEccCCCeeeehHHh---CCC-----CCCceEEEEccceEEEEEEHHHHHHH-----hccCHH--HH---HHHHHH
Confidence 4458899999999999873 222 12567999999999999999999998 666664 32 222333
Q ss_pred HHHHHHHHHhhhccchhhhhccchhhhhhh
Q 038306 424 IQDAWRRYHTRRNSTRSTGEIDSSLQVAIS 453 (494)
Q Consensus 424 ~q~~~~~~~~rr~~~~~~~~~e~r~~~~~~ 453 (494)
+........+ +...+...++++|+++.+.
T Consensus 145 l~~~l~~~~~-~~~~l~~~~~~~Rl~~~L~ 173 (232)
T 1zyb_A 145 VSNRAQNLYS-RLWDEPTLDLKSKIIRFFL 173 (232)
T ss_dssp HHHHHHHHHH-HTTSCCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHhhcCHHHHHHHHHH
Confidence 3444455555 7777888899999886654
No 16
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.64 E-value=1.4e-15 Score=133.52 Aligned_cols=116 Identities=23% Similarity=0.233 Sum_probs=101.1
Q ss_pred HHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeec-CCcccccccccCCCCCccc
Q 038306 267 LDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSK-SRASGSARFNNHRDNDNKS 345 (494)
Q Consensus 267 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~t~~f~~~~~~~~e~ 345 (494)
.++++++++|.+++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+ +| ++.
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g--------------~~~ 69 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDG--------------REN 69 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTS--------------SEE
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCC--------------cEE
Confidence 356888999999999999999999999999999999999999999999999999999764 23 344
Q ss_pred cccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCCh
Q 038306 346 KKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSE 410 (494)
Q Consensus 346 ~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~ 410 (494)
++..+.+|++||+.+++ .. .++.++++|.++|+++.|++++|.++ +..+|.
T Consensus 70 ~~~~~~~g~~~G~~~~~---~~------~~~~~~~~a~~~~~~~~i~~~~~~~l-----~~~~p~ 120 (149)
T 2pqq_A 70 MLAVVGPSELIGELSLF---DP------GPRTATGTALTEVKLLALGHGDLQPW-----LNVRPE 120 (149)
T ss_dssp EEEEECTTCEESGGGGT---SC------EECSSEEEESSCEEEEEEEGGGHHHH-----HHHCTH
T ss_pred EEEEcCCcCEechHHhc---CC------CCcceEEEEccceEEEEEeHHHHHHH-----HHhCcH
Confidence 58899999999999774 22 13677999999999999999999999 777775
No 17
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.63 E-value=1.6e-15 Score=142.44 Aligned_cols=155 Identities=12% Similarity=0.091 Sum_probs=122.1
Q ss_pred HHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeec-CCcccccccccCCCCCcccc
Q 038306 268 DLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSK-SRASGSARFNNHRDNDNKSK 346 (494)
Q Consensus 268 ~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~t~~f~~~~~~~~e~~ 346 (494)
++++++|+|.+++++.++.+...++.+.|++|++|+++|+.++.+|||.+|.|+++..+ +| ++.+
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G--------------~~~~ 68 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEG--------------REIT 68 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTS--------------CEEE
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCC--------------CEEE
Confidence 57889999999999999999999999999999999999999999999999999999754 33 3445
Q ss_pred ccccCCCCe--echhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHHHH
Q 038306 347 KDHLKDGDF--CGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAARVI 424 (494)
Q Consensus 347 ~~~l~~G~~--fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 424 (494)
+..+.+|++ ||+.+++ .+. ++.++++|.++|+++.|++++|.++ +..+|. +. ......+
T Consensus 69 ~~~~~~G~~~~~g~~~~~---~~~------~~~~~~~a~~~~~~~~i~~~~~~~l-----~~~~p~--~~---~~~~~~l 129 (220)
T 3dv8_A 69 LYRLFDMDMCLLSASCIM---RSI------QFEVTIEAEKDTDLWIIPAEIYKGI-----MKDSAP--VA---NYTNELM 129 (220)
T ss_dssp EEEECTTCEESGGGGGGC---TTC------CCCCEEEESSCEEEEEEEHHHHHHH-----HHHCHH--HH---HHHHHHH
T ss_pred EEecCCCCeeehhHHHHh---CCC------CCceEEEEeeeeEEEEEEHHHHHHH-----HHHCHH--HH---HHHHHHH
Confidence 889999999 7888763 222 3567999999999999999999999 665654 33 2223333
Q ss_pred HHHHHHHHhhhccchhhhhccchhhhhhhhhh
Q 038306 425 QDAWRRYHTRRNSTRSTGEIDSSLQVAISQGA 456 (494)
Q Consensus 425 q~~~~~~~~rr~~~~~~~~~e~r~~~~~~~~~ 456 (494)
........+ +...+...++++|+++.+-.-+
T Consensus 130 ~~~l~~~~~-~~~~~~~~~~~~Rl~~~L~~~~ 160 (220)
T 3dv8_A 130 ATRFSDVMW-LIEQIMWKSLDKRVASFLLEET 160 (220)
T ss_dssp HHHHHHHHH-HHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHhcCCHHHHHHHHHHHhh
Confidence 344444455 6677788889999998876543
No 18
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.63 E-value=2.4e-15 Score=142.21 Aligned_cols=154 Identities=11% Similarity=0.144 Sum_probs=111.5
Q ss_pred HHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeec-CCcccccccccCCCCCccc
Q 038306 267 LDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSK-SRASGSARFNNHRDNDNKS 345 (494)
Q Consensus 267 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~t~~f~~~~~~~~e~ 345 (494)
...+++.++|.+++++.++.+...++.+.|++|++|+++|+.++.+|||.+|.|+++..+ +| ++.
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G--------------~~~ 75 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDD--------------REL 75 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTS--------------CEE
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCC--------------CEE
Confidence 456788899999999999999999999999999999999999999999999999999754 33 344
Q ss_pred cccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccC-----ChhhhhhhhhhH
Q 038306 346 KKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTY-----SELNWKNLMTQA 420 (494)
Q Consensus 346 ~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~-----~~~~~~~~~~~~ 420 (494)
++..+.+|++||+.+++ ..+ +++.++++|.++|+++.|++++|.++ +..+ |. +. ...
T Consensus 76 ~~~~~~~g~~~G~~~~~---~~~-----~~~~~~~~a~~~~~v~~i~~~~~~~l-----~~~~~~~~~p~--~~---~~~ 137 (230)
T 3iwz_A 76 VLGYFGSGEFVGEMGLF---IES-----DTREVILRTRTQCELAEISYERLQQL-----FQTSLSPDAPR--IL---YAI 137 (230)
T ss_dssp EEEEECTTCEESCGGGT---SCC-----SBCCSEEEESSCEEEEEEEHHHHHHH-----HHTTTGGGHHH--HH---HHH
T ss_pred EEEEecCCCEEEehhhh---cCC-----CCceeEEEEcCcEEEEEEeHHHHHHH-----HHHhcccCCcH--HH---HHH
Confidence 58999999999999774 222 23667999999999999999999999 5555 43 22 122
Q ss_pred HHHHHHHHHHHHhhhccchhhhhccchhhhhhh
Q 038306 421 ARVIQDAWRRYHTRRNSTRSTGEIDSSLQVAIS 453 (494)
Q Consensus 421 ~~~~q~~~~~~~~rr~~~~~~~~~e~r~~~~~~ 453 (494)
...+........+ +...+...++++|+++.|-
T Consensus 138 ~~~l~~~l~~~~~-~~~~l~~~~~~~Rl~~~L~ 169 (230)
T 3iwz_A 138 GVQLSKRLLDTTR-KASRLAFLDVTDRIVRTLH 169 (230)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHhcCCHHHHHHHHHH
Confidence 2223333344445 7777888899999886664
No 19
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.62 E-value=1.6e-15 Score=143.16 Aligned_cols=151 Identities=15% Similarity=0.134 Sum_probs=120.2
Q ss_pred HHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeec-CCcccccccccCCCCCccc
Q 038306 267 LDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSK-SRASGSARFNNHRDNDNKS 345 (494)
Q Consensus 267 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~t~~f~~~~~~~~e~ 345 (494)
.++++++|+|.+++++.++.+...++.+.|++|++|+++|+.++.+|||.+|.|+++..+ +| ++.
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G--------------~~~ 73 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEG--------------QEK 73 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGG--------------CCB
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCC--------------CEE
Confidence 467899999999999999999999999999999999999999999999999999998643 23 344
Q ss_pred cccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHHHHH
Q 038306 346 KKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAARVIQ 425 (494)
Q Consensus 346 ~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~~~q 425 (494)
++..+.+|++||+.+++ .+. +.+.++++|.++|+++.|++++|.++ +..+|. +...+++
T Consensus 74 ~~~~~~~g~~~G~~~~~---~~~-----~~~~~~~~a~~~~~v~~i~~~~~~~l-----~~~~p~--------~~~~~~~ 132 (227)
T 3dkw_A 74 ILEVTNERNTFAEAMMF---MDT-----PNYVATAQAVVPSQLFRFSNKAYLRQ-----LQDNTP--------LALALLA 132 (227)
T ss_dssp CCCEECTTEEESCTTTT---TTC-----SBCSSCEEESSCCEEEEEESHHHHHH-----HSSCTH--------HHHHHHH
T ss_pred EEEEcCCCCEeeeHHhc---CCC-----CCCceEEEEcCcEEEEEEeHHHHHHH-----HHHCHH--------HHHHHHH
Confidence 58899999999999763 221 12567999999999999999999999 766775 2233333
Q ss_pred HHH---HHHHhhhccchhhhhccchhhhhhh
Q 038306 426 DAW---RRYHTRRNSTRSTGEIDSSLQVAIS 453 (494)
Q Consensus 426 ~~~---~~~~~rr~~~~~~~~~e~r~~~~~~ 453 (494)
... ....+ +...+...++++|+++.+-
T Consensus 133 ~l~~~l~~~~~-~~~~~~~~~~~~Rl~~~L~ 162 (227)
T 3dkw_A 133 KLSTRLHQRID-EIETLSLKNATHRVVRYLL 162 (227)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHhcCCHHHHHHHHHH
Confidence 333 33334 5666777888999886653
No 20
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.62 E-value=3.5e-15 Score=133.46 Aligned_cols=117 Identities=15% Similarity=0.165 Sum_probs=102.0
Q ss_pred HHHHHHHHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCC
Q 038306 261 IKRELCLDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRD 340 (494)
Q Consensus 261 i~~~l~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~ 340 (494)
-......+.+.++++|++++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++...+|
T Consensus 31 ~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g------------ 98 (161)
T 3idb_B 31 DQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDG------------ 98 (161)
T ss_dssp HHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETT------------
T ss_pred HHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCC------------
Confidence 33445678999999999999999999999999999999999999999999999999999999974444
Q ss_pred CCccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHH
Q 038306 341 NDNKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVF 400 (494)
Q Consensus 341 ~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll 400 (494)
++.++..+.+|++||+.+++ .. .++.++++|.++|+++.|++++|.+++
T Consensus 99 --~~~~~~~~~~G~~fGe~~~~---~~------~~~~~~v~A~~~~~~~~i~~~~~~~l~ 147 (161)
T 3idb_B 99 --VGRCVGNYDNRGSFGELALM---YN------TPRAATITATSPGALWGLDRVTFRRII 147 (161)
T ss_dssp --EEEEEEEEESCCEECGGGGT---CC------CCCSSEEEESSSEEEEEEEHHHHHHHH
T ss_pred --CeEEEEEcCCCCEechHHHH---cC------CCcccEEEECCCeEEEEEeHHHHHHHH
Confidence 23448899999999999874 22 236789999999999999999999994
No 21
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.62 E-value=2.1e-15 Score=138.79 Aligned_cols=137 Identities=15% Similarity=0.183 Sum_probs=112.0
Q ss_pred HHHHhhhccHHH----HHHHHHHHHHHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEE
Q 038306 246 VENLISNLPRDL----RRNIKRELCLDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLW 321 (494)
Q Consensus 246 e~~il~~Lp~~L----r~ei~~~l~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~ 321 (494)
+....+.++|++ +.+.......+.++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 334444444433 2344555667899999999999999999999999999999999999999999999999999999
Q ss_pred EEeec-CCcccccccccCCCCCccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHH
Q 038306 322 NYTSK-SRASGSARFNNHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVF 400 (494)
Q Consensus 322 v~~~~-~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll 400 (494)
++..+ +| ++.++..+.+|++||+.+++. .. ++.++++|.++|+++.|++++|.++
T Consensus 93 v~~~~~~g--------------~~~~~~~~~~G~~fGe~~~l~---~~------~~~~~v~A~~~~~v~~i~~~~~~~l- 148 (187)
T 3gyd_A 93 VIKDIPNK--------------GIQTIAKVGAGAIIGEMSMID---GM------PRSASCVASLPTDFAVLSRDALYQL- 148 (187)
T ss_dssp EEEEETTT--------------EEEEEEEEETTCEESHHHHHH---CC------CCSSEEEEEEEEEEEEEEHHHHHHH-
T ss_pred EEEECCCC--------------CeEEEEEccCCCeeeeHHHhC---CC------CeeEEEEECCCeEEEEEcHHHHHHH-
Confidence 99764 33 334588999999999998742 21 3677999999999999999999999
Q ss_pred hhcccccCCh
Q 038306 401 INHQLCTYSE 410 (494)
Q Consensus 401 ~~~~~~~~~~ 410 (494)
+..+|.
T Consensus 149 ----~~~~p~ 154 (187)
T 3gyd_A 149 ----LANMPK 154 (187)
T ss_dssp ----HHHCHH
T ss_pred ----HHHChH
Confidence 666665
No 22
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.61 E-value=2.7e-15 Score=142.27 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=118.2
Q ss_pred HHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeec-CCcccccccccCCCCCccc
Q 038306 267 LDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSK-SRASGSARFNNHRDNDNKS 345 (494)
Q Consensus 267 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~t~~f~~~~~~~~e~ 345 (494)
.++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+ +| ++.
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g--------------~~~ 70 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGG--------------RER 70 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC----------------CEE
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCC--------------ceE
Confidence 467899999999999999999999999999999999999999999999999999999754 33 344
Q ss_pred cccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHHHHH
Q 038306 346 KKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAARVIQ 425 (494)
Q Consensus 346 ~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~~~q 425 (494)
++..+.+|++||+.+++ .. .++.++++|.++|+++.|++++|.++ +..+|. +. ......+.
T Consensus 71 ~~~~~~~g~~~G~~~~~---~~------~~~~~~~~a~~~~~v~~i~~~~~~~l-----~~~~p~--~~---~~~~~~l~ 131 (231)
T 3e97_A 71 VLGDIYAPGVVGETAVL---AH------QERSASVRALTPVRTLMLHREHFELI-----LRRHPR--VL---WNLAEMLA 131 (231)
T ss_dssp EEEEEESSEEESTTTTT---CC------CCCCEEEEESSCEEEEEECHHHHHHH-----HHHCHH--HH---HHHHHHHH
T ss_pred EEEecCCCCEEeeHHHh---CC------CCceEEEEECCcEEEEEEeHHHHHHH-----HHHCHH--HH---HHHHHHHH
Confidence 58899999999999763 22 23678999999999999999999999 665664 22 11122222
Q ss_pred HHHHHHHhhhccchhhhhcc-chhhhhhhhhh
Q 038306 426 DAWRRYHTRRNSTRSTGEID-SSLQVAISQGA 456 (494)
Q Consensus 426 ~~~~~~~~rr~~~~~~~~~e-~r~~~~~~~~~ 456 (494)
.......+ +.. ...+++ +|+++.+..-+
T Consensus 132 ~~l~~~~~-~~~--~~~~~~~~Rl~~~L~~~~ 160 (231)
T 3e97_A 132 RRVTFLND-ELI--AFGQNTEAALTHVFANLY 160 (231)
T ss_dssp HHHHHHHH-HHH--HHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHH--HhccChHHHHHHHHHHHH
Confidence 33333344 333 555666 99988776433
No 23
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.61 E-value=2.9e-15 Score=142.14 Aligned_cols=148 Identities=12% Similarity=0.140 Sum_probs=117.9
Q ss_pred hchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeec-CCcccccccccCCCCCcccccccc
Q 038306 272 KVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSK-SRASGSARFNNHRDNDNKSKKDHL 350 (494)
Q Consensus 272 ~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~t~~f~~~~~~~~e~~~~~l 350 (494)
++|+|..++++.++.+...++.+.|+||++|+++|+.++.+|||.+|.|+++..+ +| ++.++..+
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g--------------~~~~~~~~ 79 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYG--------------RFHISRIV 79 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-------------------CCCEEEEE
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCC--------------CEEEEEEe
Confidence 5699999999999999999999999999999999999999999999999999653 23 34458999
Q ss_pred CCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHHHHHHHHHH
Q 038306 351 KDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAARVIQDAWRR 430 (494)
Q Consensus 351 ~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 430 (494)
.+|++||+.+++. +. ++.++++|.++|+++.|++++|.++ +..+|. +. ......+......
T Consensus 80 ~~G~~~G~~~~~~---~~------~~~~~~~A~~~~~v~~i~~~~~~~l-----~~~~p~--~~---~~~~~~l~~~l~~ 140 (232)
T 2gau_A 80 KPGQFFGMRPYFA---EE------TCSSTAIAVENSKVLAIPVEAIEAL-----LKGNTS--FC---RYFLKALAKELGY 140 (232)
T ss_dssp CTTCEESHHHHHH---TS------CCSSEEEESSCEEEEEEEHHHHHHH-----HHHCHH--HH---HHHHHHHHHHHHH
T ss_pred CCCCEeeeehhhC---CC------CcceEEEEecceEEEEEEHHHHHHH-----HHHCHH--HH---HHHHHHHHHHHHH
Confidence 9999999998752 21 3567999999999999999999999 666664 32 2233334444455
Q ss_pred HHhhhccchhhhhccchhhhhhh
Q 038306 431 YHTRRNSTRSTGEIDSSLQVAIS 453 (494)
Q Consensus 431 ~~~rr~~~~~~~~~e~r~~~~~~ 453 (494)
..+ +...+...++++|+++.+-
T Consensus 141 ~~~-~~~~l~~~~~~~Rl~~~L~ 162 (232)
T 2gau_A 141 AER-RTVTLTQKHVRGRLAETLL 162 (232)
T ss_dssp HHH-HHHHHHHSCHHHHHHHHHH
T ss_pred HHH-HHHHHhcCCHHHHHHHHHH
Confidence 555 6777888899999997774
No 24
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.60 E-value=1.1e-15 Score=133.49 Aligned_cols=92 Identities=7% Similarity=0.157 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccCCCCC
Q 038306 144 LLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQIYLQSKTIRSEEMRLKVREIEQRMPFQKLS 223 (494)
Q Consensus 144 Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~~~~~~~~~~~~~~~i~~~m~~~~lp 223 (494)
|..|+||+++|+|||||||++|.|..+++++++++++|++++|++++.+++.+........+.+......+...+..+++
T Consensus 44 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (137)
T 4h33_A 44 YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDLT 123 (137)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC---------------------
T ss_pred HHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 77999999999999999999999999999999999999999999999999988766555443333322333333445666
Q ss_pred HHHHHHHHHHHH
Q 038306 224 GNLQQQIKKYQQ 235 (494)
Q Consensus 224 ~~L~~ri~~y~~ 235 (494)
++....++++++
T Consensus 124 ~~~i~~l~~~l~ 135 (137)
T 4h33_A 124 KEEIAVVEQFLT 135 (137)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 666666666654
No 25
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.60 E-value=9.7e-15 Score=128.90 Aligned_cols=130 Identities=16% Similarity=0.186 Sum_probs=106.0
Q ss_pred HHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeec-CCcccccccccCCCCCccc
Q 038306 267 LDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSK-SRASGSARFNNHRDNDNKS 345 (494)
Q Consensus 267 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~t~~f~~~~~~~~e~ 345 (494)
.++++++++|..++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+ +| ++.
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g--------------~~~ 76 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEG--------------QEK 76 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-------------------
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCC--------------CEE
Confidence 567899999999999999999999999999999999999999999999999999999653 23 334
Q ss_pred cccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHHHHH
Q 038306 346 KKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAARVIQ 425 (494)
Q Consensus 346 ~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~~~q 425 (494)
++..+.+|++||+.+++ ... +++.++++|.++|+++.|++++|.++ +..+|. +...+++
T Consensus 77 ~~~~~~~G~~~G~~~~~---~~~-----~~~~~~~~a~~~~~~~~i~~~~~~~l-----~~~~p~--------~~~~l~~ 135 (154)
T 2z69_A 77 ILEVTNERNTFAEAMMF---MDT-----PNYVATAQAVVPSQLFRFSNKAYLRQ-----LQDNTP--------LALALLA 135 (154)
T ss_dssp CCEEECTTEEESGGGGG---SSC-----SBCSSEEEESSSEEEEEEEHHHHHHH-----HTTCHH--------HHHHHHH
T ss_pred EEEEccCCCeeccHhhc---cCC-----CCCceEEEEccceEEEEECHHHHHHH-----HHHChH--------HHHHHHH
Confidence 48899999999999874 221 12567999999999999999999999 666664 4455555
Q ss_pred HHHHHH
Q 038306 426 DAWRRY 431 (494)
Q Consensus 426 ~~~~~~ 431 (494)
....++
T Consensus 136 ~~~~rl 141 (154)
T 2z69_A 136 KLSTRL 141 (154)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 26
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.60 E-value=5.1e-15 Score=126.60 Aligned_cols=60 Identities=8% Similarity=0.345 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038306 142 QKLLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQIYLQSKTI 201 (494)
Q Consensus 142 ~~Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~~~~ 201 (494)
..|..|+||++.|+|||||||++|.|..+++++++.+++|..++++.+|.+++.+.+..+
T Consensus 60 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 60 ITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358899999999999999999999999999999999999999999999999999886544
No 27
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.59 E-value=1.1e-14 Score=129.10 Aligned_cols=86 Identities=19% Similarity=0.318 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHh----hhhhhHHHHHHHHHH
Q 038306 144 LLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQI------YLQS----KTIRSEEMRLKVREI 213 (494)
Q Consensus 144 Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~------il~~----~~~~~~~~~~~~~~i 213 (494)
|..|+||+++|+|||||||++|.|..+++++++.+++|+.+++++++.++. +... .+....+..++++++
T Consensus 53 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i 132 (148)
T 3vou_A 53 PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAI 132 (148)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999886 3332 344556667788999
Q ss_pred HhhccCCCCCHHHHHH
Q 038306 214 EQRMPFQKLSGNLQQQ 229 (494)
Q Consensus 214 ~~~m~~~~lp~~L~~r 229 (494)
++++++++.|++|+.|
T Consensus 133 ~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 133 EKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHTTC------
T ss_pred HHHHHhcCCCcCCCCC
Confidence 9999999999999875
No 28
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.57 E-value=1.4e-14 Score=125.57 Aligned_cols=123 Identities=27% Similarity=0.296 Sum_probs=102.3
Q ss_pred HHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCcccc
Q 038306 267 LDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSK 346 (494)
Q Consensus 267 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~ 346 (494)
.++++++++|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+
T Consensus 10 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~-------------------- 69 (138)
T 1vp6_A 10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN-------------------- 69 (138)
T ss_dssp HHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS--------------------
T ss_pred HHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC--------------------
Confidence 567999999999999999999999999999999999999999999999999999997532
Q ss_pred ccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHHHHHH
Q 038306 347 KDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAARVIQD 426 (494)
Q Consensus 347 ~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~~~q~ 426 (494)
...+.+|++||+.+++. +. ++..+++|.++|+++.|++++|.++ +..+|. +...+.+.
T Consensus 70 ~~~~~~G~~~G~~~~~~---~~------~~~~~~~a~~~~~~~~i~~~~~~~l-----~~~~p~--------~~~~~~~~ 127 (138)
T 1vp6_A 70 PVELGPGAFFGEMALIS---GE------PRSATVSAATTVSLLSLHSADFQML-----CSSSPE--------IAEIFRKT 127 (138)
T ss_dssp CEEECTTCEECHHHHHH---CC------CCSSCEEESSSEEEEEEEHHHHHHH-----HHHCHH--------HHHHHHHH
T ss_pred cceECCCCEeeehHhcc---CC------CceeEEEECCCEEEEEECHHHHHHH-----HHHCHH--------HHHHHHHH
Confidence 23678999999998753 21 2567999999999999999999999 666664 44555554
Q ss_pred HHHHH
Q 038306 427 AWRRY 431 (494)
Q Consensus 427 ~~~~~ 431 (494)
...++
T Consensus 128 ~~~r~ 132 (138)
T 1vp6_A 128 ALERR 132 (138)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 44433
No 29
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.57 E-value=4.7e-15 Score=139.55 Aligned_cols=146 Identities=12% Similarity=0.158 Sum_probs=118.7
Q ss_pred HHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccc
Q 038306 268 DLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKK 347 (494)
Q Consensus 268 ~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~ 347 (494)
.++.++|+|.+++++.+..+...++.+.|++|++|+++|+.++.+|||.+|.|+++...+| ++.++
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G--------------~~~~~ 69 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYED--------------KEFTL 69 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSS--------------CEEEE
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCC--------------CEEEE
Confidence 3577899999999999999999999999999999999999999999999999999644444 34458
Q ss_pred cccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHHHHHHH
Q 038306 348 DHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAARVIQDA 427 (494)
Q Consensus 348 ~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~~~q~~ 427 (494)
..+.+|++||+. +.++++|.++|+++.|++++|.++ +..+|. +. ......+...
T Consensus 70 ~~~~~G~~~G~~----------------~~~~~~A~~~~~v~~i~~~~~~~l-----~~~~p~--~~---~~~~~~~~~~ 123 (220)
T 2fmy_A 70 AILEAGDIFCTH----------------TRAFIQAMEDTTILYTDIRNFQNI-----VVEFPA--FS---LNMVKVLGDL 123 (220)
T ss_dssp EEEETTCEEESC----------------SSSEEEESSSEEEEEEEHHHHHHH-----HHHCTH--HH---HHHHHHHHHH
T ss_pred EEcCCCCEeCCc----------------cceEEEEcCcEEEEEEeHHHHHHH-----HHHCHH--HH---HHHHHHHHHH
Confidence 899999999981 456999999999999999999999 666775 22 2233344444
Q ss_pred HHHHHhhhccchhhhhccchhhhhhhh
Q 038306 428 WRRYHTRRNSTRSTGEIDSSLQVAISQ 454 (494)
Q Consensus 428 ~~~~~~rr~~~~~~~~~e~r~~~~~~~ 454 (494)
.....+ +...+...++++|+++.+-.
T Consensus 124 ~~~~~~-~~~~l~~~~~~~Rl~~~L~~ 149 (220)
T 2fmy_A 124 LKNSLT-IINGLVFKDARLRLAEFLVQ 149 (220)
T ss_dssp HHHHHH-HHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHcCCHHHHHHHHHHH
Confidence 455555 77778888999999977753
No 30
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.57 E-value=1.9e-14 Score=134.07 Aligned_cols=147 Identities=10% Similarity=0.127 Sum_probs=111.4
Q ss_pred hhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeec-CCcccccccccCCCCCccccccccCC
Q 038306 274 EEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSK-SRASGSARFNNHRDNDNKSKKDHLKD 352 (494)
Q Consensus 274 ~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~t~~f~~~~~~~~e~~~~~l~~ 352 (494)
++++.++++.++.+...++.+.|++|++|+++|+.++++|||.+|.|+++..+ +| ++.++..+.+
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g--------------~~~~~~~~~~ 67 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEG--------------KEMILSYLNQ 67 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTC--------------CEEEEEEEET
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCC--------------CEEEEEEcCC
Confidence 45677999999999999999999999999999999999999999999999753 33 3445889999
Q ss_pred CCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHHHHHHHHHHHH
Q 038306 353 GDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAARVIQDAWRRYH 432 (494)
Q Consensus 353 G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~ 432 (494)
|++||+.+++ ... +++.++++|.++|+++.|++++|.++ +..+|. +. ......+........
T Consensus 68 g~~~G~~~~~---~~~-----~~~~~~~~a~~~~~v~~i~~~~~~~l-----~~~~p~--~~---~~~~~~l~~~l~~~~ 129 (210)
T 3ryp_A 68 GDFIGELGLF---EEG-----QERSAWVRAKTACEVAEISYKKFRQL-----IQVNPD--IL---MRLSAQMARRLQVTS 129 (210)
T ss_dssp TCEESCTTTT---STT-----CBCSSEEEESSCEEEEEEEHHHHHHH-----HHHCTH--HH---HHHHHHHHHHHHHHH
T ss_pred CCEeeeHHHh---cCC-----CCceEEEEECCcEEEEEEcHHHHHHH-----HHHChH--HH---HHHHHHHHHHHHHHH
Confidence 9999999764 222 13667999999999999999999999 666665 22 122222333334444
Q ss_pred hhhccchhhhhccchhhhhhh
Q 038306 433 TRRNSTRSTGEIDSSLQVAIS 453 (494)
Q Consensus 433 ~rr~~~~~~~~~e~r~~~~~~ 453 (494)
+ +...+...++++|+++.+-
T Consensus 130 ~-~~~~~~~~~~~~Rl~~~L~ 149 (210)
T 3ryp_A 130 E-KVGNLAFLDVTGRIAQTLL 149 (210)
T ss_dssp H-HHHHHHHSCHHHHHHHHHH
T ss_pred H-HHHHHhhCCHHHHHHHHHH
Confidence 4 6677778889999886664
No 31
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.56 E-value=2.2e-14 Score=127.33 Aligned_cols=110 Identities=18% Similarity=0.299 Sum_probs=97.0
Q ss_pred HHHHHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCc
Q 038306 264 ELCLDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDN 343 (494)
Q Consensus 264 ~l~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~ 343 (494)
....+++.++++|.+++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++. + ++
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~-~~-------------- 97 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-N-NE-------------- 97 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE-T-TE--------------
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE-C-CE--------------
Confidence 3446789999999999999999999999999999999999999999999999999999996 2 22
Q ss_pred cccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHH
Q 038306 344 KSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVF 400 (494)
Q Consensus 344 e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll 400 (494)
.+..+.+|++||+.+++. .. ++.++++|+++|+++.|++++|.+++
T Consensus 98 --~~~~~~~G~~fGe~~~~~---~~------~~~~~v~A~~~~~~~~i~~~~~~~ll 143 (154)
T 3pna_A 98 --WATSVGEGGSFGELALIY---GT------PRAATVKAKTNVKLWGIDRDSYRRIL 143 (154)
T ss_dssp --EEEEECTTCEECCHHHHH---CC------CCSSEEEESSCEEEEEEEHHHHHHHT
T ss_pred --EEEEecCCCEeeehHhhc---CC------CcceEEEECcceEEEEEeHHHHHHHH
Confidence 177899999999998853 11 35679999999999999999999993
No 32
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.55 E-value=2.5e-15 Score=130.13 Aligned_cols=116 Identities=12% Similarity=0.189 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHhhhchhhhcCcHHHHHHHHhccceeeec-CCCEEEccCCCCCeEEEEEeeEEEEEeecCCccccccc
Q 038306 257 LRRNIKRELCLDLLKKVEEFKKLDEATLDALCDCVKPAFFI-ERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARF 335 (494)
Q Consensus 257 Lr~ei~~~l~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~-~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f 335 (494)
.|.+-......+++.++++|..++++.+..++..++.+.|. +|++|+++|+.++.+|||.+|.|+++..++.
T Consensus 5 ~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~g~------- 77 (134)
T 2d93_A 5 SSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPDGK------- 77 (134)
T ss_dssp CCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECSSSC-------
T ss_pred hcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcCCCc-------
Confidence 33333334446678899999999999999999999999999 9999999999999999999999999963332
Q ss_pred ccCCCCCccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEE-EEcceEEEEEeCHHHHHHH
Q 038306 336 NNHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTI-QALTKVEAFALMADDLKNV 399 (494)
Q Consensus 336 ~~~~~~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv-~A~~~~~l~~is~~df~~l 399 (494)
...+.+|++||+.+++ .. .++.+++ +|.++|+++.|++++|.++
T Consensus 78 -----------~~~l~~G~~fG~~~~~---~~------~~~~~~~~~a~~~~~~~~i~~~~~~~l 122 (134)
T 2d93_A 78 -----------VENLFMGNSFGITPTL---DK------QYMHGIVRTKVDDCQFVCIAQQDYWRI 122 (134)
T ss_dssp -----------EEEECTTCEESCCSSS---CC------EECCSEEEESSSSEEEEEEEHHHHHHH
T ss_pred -----------EEEecCCCccChhHhc---CC------CcceeEEEEEecceEEEEEeHHHHHHH
Confidence 2457899999999763 22 1355678 9999999999999999999
No 33
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.54 E-value=4e-14 Score=131.52 Aligned_cols=145 Identities=13% Similarity=0.160 Sum_probs=109.2
Q ss_pred CcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeec-CCcccccccccCCCCCccccccccCCCCeec
Q 038306 279 LDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSK-SRASGSARFNNHRDNDNKSKKDHLKDGDFCG 357 (494)
Q Consensus 279 ~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fG 357 (494)
+|++.++.++..++.+.|+||++|+++|+.++.+|||.+|.|+++..+ +| ++.++..+.+|++||
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G--------------~~~~~~~~~~g~~~G 66 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDG--------------REMIIGYLNSGDFFG 66 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTS--------------CEEEEEEEETTCEES
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCC--------------CEEEEEEcCCCCCcc
Confidence 578899999999999999999999999999999999999999999754 33 344589999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHHHHHHHHHHHHhhhcc
Q 038306 358 EELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAARVIQDAWRRYHTRRNS 437 (494)
Q Consensus 358 e~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~rr~~ 437 (494)
+.+++ .... . .+++.++++|.++|+++.|++++|.++ +..+|. +. ......+........+ +..
T Consensus 67 ~~~~~---~~~~-~-~~~~~~~~~A~~~~~v~~i~~~~~~~l-----~~~~p~--~~---~~~~~~l~~~~~~~~~-~~~ 130 (207)
T 2oz6_A 67 ELGLF---EKEG-S-EQERSAWVRAKVECEVAEISYAKFREL-----SQQDSE--IL---YTLGSQMADRLRKTTR-KVG 130 (207)
T ss_dssp CTTTC---C-------CBCCSEEEESSCEEEEEEEHHHHHHH-----HHHCHH--HH---HHHHHHHHHHHHHHHH-HHH
T ss_pred cHHHh---cCCC-C-CCCcceEEEECCcEEEEEECHHHHHHH-----HHHCHH--HH---HHHHHHHHHHHHHHHH-HHH
Confidence 99763 2210 0 003667999999999999999999999 665664 22 1112222333334444 666
Q ss_pred chhhhhccchhhhhhh
Q 038306 438 TRSTGEIDSSLQVAIS 453 (494)
Q Consensus 438 ~~~~~~~e~r~~~~~~ 453 (494)
.+...++++|+++.+-
T Consensus 131 ~l~~~~~~~Rl~~~L~ 146 (207)
T 2oz6_A 131 DLAFLDVTGRVARTLL 146 (207)
T ss_dssp HHHHCCHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHH
Confidence 7778889999886654
No 34
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.54 E-value=8.3e-15 Score=138.16 Aligned_cols=144 Identities=11% Similarity=0.046 Sum_probs=114.4
Q ss_pred HhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCcccccc
Q 038306 269 LLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKD 348 (494)
Q Consensus 269 ~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~ 348 (494)
++.++|+|..++++.+..++..++.+.|++|++|+++|+.++++|||.+|.|+++...+| ++.++.
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G--------------~~~~~~ 66 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEE--------------REISLF 66 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETT--------------EEEEEE
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCC--------------CEEEEE
Confidence 367889999999999999999999999999999999999999999999999999743344 344588
Q ss_pred ccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHHHHHHHH
Q 038306 349 HLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAARVIQDAW 428 (494)
Q Consensus 349 ~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 428 (494)
.+.+|++|| . ++.++++|.++|+++.|++++|.++ +..+|. +. ......+....
T Consensus 67 ~~~~G~~fG-~---------------~~~~~~~A~~~~~v~~i~~~~~~~l-----~~~~p~--~~---~~~~~~l~~~l 120 (222)
T 1ft9_A 67 YLTSGDMFC-M---------------HSGCLVEATERTEVRFADIRTFEQK-----LQTCPS--MA---WGLIAILGRAL 120 (222)
T ss_dssp EEETTCEEE-S---------------CSSCEEEESSCEEEEEECHHHHHHH-----HHHCGG--GH---HHHHHHHHHHH
T ss_pred EcCCCCEec-C---------------CCCEEEEEccceEEEEEeHHHHHHH-----HHHChH--HH---HHHHHHHHHHH
Confidence 999999999 1 2567999999999999999999999 666665 22 22233334444
Q ss_pred HHHHhhhccchhhhhccchhhhhhh
Q 038306 429 RRYHTRRNSTRSTGEIDSSLQVAIS 453 (494)
Q Consensus 429 ~~~~~rr~~~~~~~~~e~r~~~~~~ 453 (494)
....+ +...+...++++|+++.+-
T Consensus 121 ~~~~~-~~~~l~~~~~~~Rl~~~L~ 144 (222)
T 1ft9_A 121 TSCMR-TIEDLMFHDIKQRIAGFFI 144 (222)
T ss_dssp HHHHH-HHHHHHTHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHhcCCHHHHHHHHHH
Confidence 44555 6677788889999886553
No 35
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.53 E-value=1.8e-14 Score=142.16 Aligned_cols=125 Identities=15% Similarity=0.257 Sum_probs=111.1
Q ss_pred HhhhccHHHHHHHHHHHHHHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCC
Q 038306 249 LISNLPRDLRRNIKRELCLDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSR 328 (494)
Q Consensus 249 il~~Lp~~Lr~ei~~~l~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~ 328 (494)
-..++|+..|.+....+..+.++++++|++++++.+..++..++.+.|++|++|+++||.++.+|||.+|.|+++. + |
T Consensus 20 ~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~-~-g 97 (299)
T 3shr_A 20 SMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-E-G 97 (299)
T ss_dssp --CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE-T-T
T ss_pred ccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE-C-C
Confidence 4567999999999999999999999999999999999999999999999999999999999999999999999964 2 2
Q ss_pred cccccccccCCCCCccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHH
Q 038306 329 ASGSARFNNHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVF 400 (494)
Q Consensus 329 ~~~t~~f~~~~~~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll 400 (494)
. ++..+.+|++||+.+++. . .+|+++++|.++|+++.|++++|.+++
T Consensus 98 ~----------------~~~~~~~G~~fGe~~ll~---~------~~~~~tv~a~~~~~l~~i~~~~~~~i~ 144 (299)
T 3shr_A 98 V----------------KLCTMGPGKVFGELAILY---N------CTRTATVKTLVNVKLWAIDRQCFQTIM 144 (299)
T ss_dssp E----------------EEEEECTTCEESCSGGGT---T------TBCCSEEEESSCEEEEEECHHHHHHHH
T ss_pred E----------------EEEEeCCCCeeeHhHHhc---C------CCCCcEEEEcCCeEEEEEcHHHHHHHh
Confidence 2 278899999999998742 2 247889999999999999999999993
No 36
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.51 E-value=1.2e-13 Score=138.49 Aligned_cols=114 Identities=13% Similarity=0.147 Sum_probs=100.4
Q ss_pred HHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecC-CcccccccccCCCCCccc
Q 038306 267 LDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKS-RASGSARFNNHRDNDNKS 345 (494)
Q Consensus 267 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~-~~~~t~~f~~~~~~~~e~ 345 (494)
.+.++++|+|++++++.+..++..++.+.|++|++|+++||.++++|||.+|.|+++..+. |+ +
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~--------------~- 76 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGV--------------A- 76 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCC--------------E-
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCc--------------E-
Confidence 4678999999999999999999999999999999999999999999999999999997643 32 2
Q ss_pred cccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCCh
Q 038306 346 KKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSE 410 (494)
Q Consensus 346 ~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~ 410 (494)
++..+.+|++||+.+++. . .+++++++|+++|+++.|++++|.++ + .+|.
T Consensus 77 ~~~~~~~G~~fGe~~l~~---~------~~~~~~v~A~~~~~~~~i~~~~~~~l-----~-~~p~ 126 (333)
T 4ava_A 77 IIARALPGMIVGEIALLR---D------SPRSATVTTIEPLTGWTGGRGAFATM-----V-HIPG 126 (333)
T ss_dssp EEEEECTTCEESHHHHHH---T------CBCSSEEEESSCEEEEEECHHHHHHH-----H-HSTT
T ss_pred EEEEecCCCEeeHHHhcC---C------CCceEEEEEecCEEEEEEcHHHHHHH-----H-hChH
Confidence 488999999999998853 1 24778999999999999999999999 5 5664
No 37
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.51 E-value=8.9e-14 Score=134.65 Aligned_cols=144 Identities=10% Similarity=0.140 Sum_probs=109.9
Q ss_pred hcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeec-CCcccccccccCCCCCccccccccCCCCe
Q 038306 277 KKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSK-SRASGSARFNNHRDNDNKSKKDHLKDGDF 355 (494)
Q Consensus 277 ~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~t~~f~~~~~~~~e~~~~~l~~G~~ 355 (494)
..++++.++.+...++.+.|++|++|+++|+.++.+|||.+|.|+++..+ +| ++.++..+.+|++
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G--------------~e~~~~~~~~G~~ 120 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEG--------------KEMILSYLNQGDF 120 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTC--------------CEEEEEEEETTCE
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCC--------------CEEEEEEcCCCCE
Confidence 45899999999999999999999999999999999999999999999753 33 3445899999999
Q ss_pred echhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHHHHHHHHHHHHhhh
Q 038306 356 CGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAARVIQDAWRRYHTRR 435 (494)
Q Consensus 356 fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~rr 435 (494)
||+.+++ ... +++.++++|+++|+++.|++++|.++ +..+|. +. ......+........+ +
T Consensus 121 ~Ge~~~~---~~~-----~~~~~~~~A~~~~~l~~i~~~~~~~l-----~~~~p~--l~---~~l~~~l~~~l~~~~~-~ 181 (260)
T 3kcc_A 121 IGELGLF---EEG-----QERSAWVRAKTACEVAEISYKKFRQL-----IQVNPD--IL---MRLSAQMARRLQVTSE-K 181 (260)
T ss_dssp ESCTTTT---STT-----CBCCSEEEESSCEEEEEEEHHHHHHH-----HHHCTH--HH---HHHHHHHHHHHHHHHH-H
T ss_pred EeehHHh---CCC-----CCCceEEEECCCeEEEEEcHHHHHHH-----HHHCHH--HH---HHHHHHHHHHHHHHHH-H
Confidence 9999764 222 13677999999999999999999999 666665 22 1222233333344445 6
Q ss_pred ccchhhhhccchhhhhhh
Q 038306 436 NSTRSTGEIDSSLQVAIS 453 (494)
Q Consensus 436 ~~~~~~~~~e~r~~~~~~ 453 (494)
...+...++++|+++.|-
T Consensus 182 ~~~l~~~~~~~Rla~~Ll 199 (260)
T 3kcc_A 182 VGNLAFLLVTGRIAQTLL 199 (260)
T ss_dssp HHHHHHCCHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHH
Confidence 677778889999886654
No 38
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.50 E-value=1.3e-13 Score=135.89 Aligned_cols=119 Identities=20% Similarity=0.350 Sum_probs=104.4
Q ss_pred HHHHHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeec--CCcccccccccCCCC
Q 038306 264 ELCLDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSK--SRASGSARFNNHRDN 341 (494)
Q Consensus 264 ~l~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~--~~~~~t~~f~~~~~~ 341 (494)
..+..++.++++|..++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+ +|
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g------------- 219 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNE------------- 219 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSC-------------
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCC-------------
Confidence 445778999999999999999999999999999999999999999999999999999999754 23
Q ss_pred CccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCCh
Q 038306 342 DNKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSE 410 (494)
Q Consensus 342 ~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~ 410 (494)
++.++..+.+|++||+.+++ .. .+++++++|.++|+++.|++++|.++ +..+|.
T Consensus 220 -~~~~~~~l~~G~~fGe~~ll---~~------~~~~~tv~a~~~~~l~~i~~~~f~~l-----l~~~p~ 273 (299)
T 3shr_A 220 -DPVFLRTLGKGDWFGEKALQ---GE------DVRTANVIAAEAVTCLVIDRDSFKHL-----IGGLDD 273 (299)
T ss_dssp -CCEEEEEEETTCEECGGGGS---SS------EECSSEEEESSSEEEEEEEHHHHHHH-----HTTCCC
T ss_pred -cceEEEEcCCCCEeChHHHh---CC------CCcceEEEECCCEEEEEEeHHHHHHH-----HccHHH
Confidence 34458899999999999874 22 24778999999999999999999999 777775
No 39
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.48 E-value=6.9e-14 Score=131.10 Aligned_cols=149 Identities=15% Similarity=0.167 Sum_probs=99.6
Q ss_pred chhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeec-CCcccccccccCCCCCccccccccC
Q 038306 273 VEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSK-SRASGSARFNNHRDNDNKSKKDHLK 351 (494)
Q Consensus 273 i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~t~~f~~~~~~~~e~~~~~l~ 351 (494)
-|.|.+.++.....+...++.+.|++|++|+++|+.++.+|||.+|.|+++..+ +| ++.++..+.
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G--------------~~~~~~~~~ 69 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENG--------------KTLEIDEIK 69 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTS--------------CEEEEEEEC
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCC--------------CEEEEEEec
Confidence 367888888899999999999999999999999999999999999999999753 33 344588999
Q ss_pred CCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHHHHHHHHHHH
Q 038306 352 DGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAARVIQDAWRRY 431 (494)
Q Consensus 352 ~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 431 (494)
+|++||+.+++ ... +++.++++|.++|+++.|++++|.++ +..+|.. .. .+.+.+.++ ....
T Consensus 70 ~G~~~G~~~~~---~~~-----~~~~~~~~A~~~~~v~~i~~~~~~~l-----~~~~p~~-~~---~l~~~l~~~-~~~~ 131 (213)
T 1o5l_A 70 PVQIIASGFIF---SSE-----PRFPVNVVAGENSKILSIPKEVFLDL-----LMKDREL-LL---FFLKDVSEH-FRVV 131 (213)
T ss_dssp SSEESSGGGTT---SSS-----CBCSSEEEESSSEEEEEEEHHHHHHH-----HHHCHHH-HH---HHHHHHHHH-HHHH
T ss_pred CCCEeeeHHHh---cCC-----CCceEEEEEccceEEEEEeHHHHHHH-----HHHCHHH-HH---HHHHHHHHH-HHHH
Confidence 99999999763 221 13667999999999999999999999 6666651 11 233333333 3334
Q ss_pred Hhhhccchhhhhccchhhhhhhh
Q 038306 432 HTRRNSTRSTGEIDSSLQVAISQ 454 (494)
Q Consensus 432 ~~rr~~~~~~~~~e~r~~~~~~~ 454 (494)
.+ +...+...++++|+++.+..
T Consensus 132 ~~-~~~~l~~~~~~~Rl~~~L~~ 153 (213)
T 1o5l_A 132 SE-KLFFLTTKTLREKLMNFLVR 153 (213)
T ss_dssp HH-HHHHHHCC------------
T ss_pred HH-HHHHHhhCCHHHHHHHHHHH
Confidence 45 67778888999999987754
No 40
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.47 E-value=3.2e-13 Score=128.69 Aligned_cols=113 Identities=18% Similarity=0.193 Sum_probs=99.0
Q ss_pred HHHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccc
Q 038306 266 CLDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKS 345 (494)
Q Consensus 266 ~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~ 345 (494)
..+.++++++|++++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++.. +..
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~~--~~~--------------- 67 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVN--DNK--------------- 67 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEEST--TSC---------------
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEEC--CEE---------------
Confidence 367889999999999999999999999999999999999999999999999999999852 211
Q ss_pred cccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCCh
Q 038306 346 KKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSE 410 (494)
Q Consensus 346 ~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~ 410 (494)
+..+.+|++||+.+++. . .+++++++|.++|+++.|++++|.++ +..++.
T Consensus 68 -~~~~~~g~~fGe~~l~~---~------~~~~~tv~a~~~~~~~~i~~~~~~~~-----~~~~~~ 117 (246)
T 3of1_A 68 -VNSSGPGSSFGELALMY---N------SPRAATVVATSDCLLWALDRLTFRKI-----LLGSSF 117 (246)
T ss_dssp -CEEECTTCEECHHHHHH---T------CCCSSEEEESSCEEEEEEEHHHHHHT-----TTTTTS
T ss_pred -EEecCCCCeeehhHHhc---C------CCCCcEEEECCCeEEEEEEhHHHHHH-----HHHhHH
Confidence 78899999999998853 1 23678999999999999999999998 555554
No 41
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.45 E-value=2.9e-13 Score=128.96 Aligned_cols=109 Identities=20% Similarity=0.248 Sum_probs=97.4
Q ss_pred HHHHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCcc
Q 038306 265 LCLDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNK 344 (494)
Q Consensus 265 l~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e 344 (494)
++..++.++++|+.+++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+++
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~---------------- 185 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG---------------- 185 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE----------------
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc----------------
Confidence 3456788899999999999999999999999999999999999999999999999999875432
Q ss_pred ccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHH
Q 038306 345 SKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNV 399 (494)
Q Consensus 345 ~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~l 399 (494)
++..+.+|++||+.+++. . .+|.++++|.++|+++.|++++|.++
T Consensus 186 -~~~~l~~g~~fGe~~~~~---~------~~~~~~v~a~~~~~~~~i~~~~f~~l 230 (246)
T 3of1_A 186 -VINKLKDHDYFGEVALLN---D------LPRQATVTATKRTKVATLGKSGFQRL 230 (246)
T ss_dssp -EEEEEETTCEECHHHHHH---T------CBCSSEEEESSCEEEEEEEHHHHHHH
T ss_pred -eEEEcCCCCcccHHHHhC---C------CCcccEEEECCCEEEEEEeHHHHHHH
Confidence 288999999999998853 2 24778999999999999999999999
No 42
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.45 E-value=4.8e-13 Score=138.57 Aligned_cols=116 Identities=16% Similarity=0.198 Sum_probs=102.1
Q ss_pred HHHHHHHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCC
Q 038306 262 KRELCLDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDN 341 (494)
Q Consensus 262 ~~~l~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~ 341 (494)
......+.+.++++|++++++.+..|+..++.+.|++|++|+++|+.++.+|||.+|.|+++...+|
T Consensus 139 ~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G------------- 205 (416)
T 3tnp_B 139 QRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDG------------- 205 (416)
T ss_dssp HHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSS-------------
T ss_pred HHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCC-------------
Confidence 3445578899999999999999999999999999999999999999999999999999999975444
Q ss_pred CccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHH
Q 038306 342 DNKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVF 400 (494)
Q Consensus 342 ~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll 400 (494)
++.++..+.+|++||+.+++. . .+|.++++|.++|+++.|++++|.+++
T Consensus 206 -~~~~v~~l~~G~~fGe~all~---~------~pr~atv~A~~d~~l~~i~r~~f~~ll 254 (416)
T 3tnp_B 206 -VGRCVGNYDNRGSFGELALMY---N------TPKAATITATSPGALWGLDRVTFRRII 254 (416)
T ss_dssp -CEEEEEEEESCCEECGGGGTS---C------CCCSSEEEESSSEEEEEEEHHHHHHHH
T ss_pred -CEEEEEEecCCCEEeeHHHhc---C------CCcccEEEEccCeEEEEEeehhhhhhh
Confidence 234488999999999998742 2 247889999999999999999999996
No 43
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.44 E-value=2.9e-13 Score=118.52 Aligned_cols=58 Identities=10% Similarity=0.431 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038306 143 KLLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQIYLQSKT 200 (494)
Q Consensus 143 ~Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~~~ 200 (494)
.|..|+||+++|+|||||||++|.|..+++++++.+++|+.+++++++.+++.+.+..
T Consensus 40 ~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~ 97 (139)
T 3eff_K 40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGRE 97 (139)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHH
T ss_pred CHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999998775443
No 44
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.43 E-value=9.8e-13 Score=128.93 Aligned_cols=109 Identities=18% Similarity=0.275 Sum_probs=97.2
Q ss_pred HHHHHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCc
Q 038306 264 ELCLDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDN 343 (494)
Q Consensus 264 ~l~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~ 343 (494)
....+.+.++++|++++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++. +| . .
T Consensus 35 ~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~g-~-~------------ 99 (291)
T 2qcs_B 35 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NN-E-W------------ 99 (291)
T ss_dssp HHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE-TT-E-E------------
T ss_pred HHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE-CC-e-E------------
Confidence 3457789999999999999999999999999999999999999999999999999999987 32 2 1
Q ss_pred cccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHH
Q 038306 344 KSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNV 399 (494)
Q Consensus 344 e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~l 399 (494)
+..+.+|++||+.+++ .. .++.++++|.++|+++.|++++|.++
T Consensus 100 ---~~~l~~G~~fGe~~l~---~~------~~~~~tv~a~~~~~~~~i~~~~~~~~ 143 (291)
T 2qcs_B 100 ---ATSVGEGGSFGELALI---YG------TPRAATVKAKTNVKLWGIDRDSYRRI 143 (291)
T ss_dssp ---EEEECTTCEECGGGGT---CC------CBCSSEEEESSCEEEEEEEHHHHHHH
T ss_pred ---EEEcCCCCccchHHHh---cC------CCCceEEEECCCEEEEEEEhHHHHHH
Confidence 7889999999999874 22 24778999999999999999999999
No 45
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.43 E-value=4.8e-13 Score=141.77 Aligned_cols=60 Identities=15% Similarity=0.239 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038306 142 QKLLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQIYLQSKTI 201 (494)
Q Consensus 142 ~~Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~~~~ 201 (494)
..|..|+||++.|||||||||+.|.+..++++++++|++|++++++.+|.+.+.+.....
T Consensus 374 ~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~ 433 (514)
T 2r9r_B 374 PSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH 433 (514)
T ss_dssp SSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred cchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457799999999999999999999999999999999999999999999999887766544
No 46
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.43 E-value=8.8e-14 Score=146.05 Aligned_cols=126 Identities=19% Similarity=0.174 Sum_probs=109.1
Q ss_pred ccHHHHHHHHHHHHHHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeec-CCccc
Q 038306 253 LPRDLRRNIKRELCLDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSK-SRASG 331 (494)
Q Consensus 253 Lp~~Lr~ei~~~l~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~ 331 (494)
.|+..|.+-......+.+.++++|.+++++.+..++..++.+.|++|++|+++||.++.+|||.+|.|+++..+ +|..
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~- 105 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQ- 105 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGG-
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCC-
Confidence 46777777777788899999999999999999999999999999999999999999999999999999999754 2211
Q ss_pred ccccccCCCCCccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHH
Q 038306 332 SARFNNHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVF 400 (494)
Q Consensus 332 t~~f~~~~~~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll 400 (494)
++.++..+.+|++||+.+ +. . .+++++++|.++|+++.|++++|.+++
T Consensus 106 -----------~~~~~~~~~~G~~fGe~~-l~---~------~~~~~tv~A~~~~~l~~i~~~~~~~l~ 153 (469)
T 1o7f_A 106 -----------DAVTICTLGIGTAFGESI-LD---N------TPRHATIVTRESSELLRIEQEDFKALW 153 (469)
T ss_dssp -----------GCEEEEEECTTCEECGGG-GG---T------CBCSSEEEESSSEEEEEEEHHHHHHHH
T ss_pred -----------cceEEEEccCCCCcchhh-hC---C------CCccceEEEccceeEEEEcHHHHHHHH
Confidence 235589999999999987 42 1 246789999999999999999999995
No 47
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.43 E-value=2.3e-13 Score=130.69 Aligned_cols=145 Identities=10% Similarity=0.014 Sum_probs=112.5
Q ss_pred hchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeec-CCcccccccccCCCCCcccccccc
Q 038306 272 KVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSK-SRASGSARFNNHRDNDNKSKKDHL 350 (494)
Q Consensus 272 ~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~t~~f~~~~~~~~e~~~~~l 350 (494)
++..+..++++.++.+...++.+.|++|++|+++|++++.+|||.+|.|+++..+ +| ++.++..+
T Consensus 13 ~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G--------------~~~~~~~~ 78 (250)
T 3e6c_C 13 AIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDG--------------SEKLLYYA 78 (250)
T ss_dssp CSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTS--------------CEEEEEEE
T ss_pred hccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCC--------------CEEEEEEe
Confidence 3333478999999999999999999999999999999999999999999999753 33 34458999
Q ss_pred CCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHHHHHHHHHH
Q 038306 351 KDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAARVIQDAWRR 430 (494)
Q Consensus 351 ~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 430 (494)
.+|++||+ ++ .+ . +.++++|+++|+++.|++++|.++ +..+|. +. ......+......
T Consensus 79 ~~G~~~G~--~l---~~------~-~~~~~~A~~~~~v~~i~~~~~~~l-----~~~~p~--~~---~~l~~~l~~~l~~ 136 (250)
T 3e6c_C 79 GGNSLIGK--LY---PT------G-NNIYATAMEPTRTCWFSEKSLRTV-----FRTDED--MI---FEIFKNYLTKVAY 136 (250)
T ss_dssp CTTCEECC--CS---CC------S-CCEEEEESSSEEEEEECHHHHHHH-----HHHCTH--HH---HHHHHHHHHHHHH
T ss_pred cCCCEEee--ec---CC------C-CceEEEEcccEEEEEEcHHHHHHH-----HHHCHH--HH---HHHHHHHHHHHHH
Confidence 99999999 32 21 2 457999999999999999999999 666665 22 1222233333344
Q ss_pred HHhhhccchhhhhccchhhhhhh
Q 038306 431 YHTRRNSTRSTGEIDSSLQVAIS 453 (494)
Q Consensus 431 ~~~rr~~~~~~~~~e~r~~~~~~ 453 (494)
..+ +...+...++++|+++.|-
T Consensus 137 ~~~-~~~~~~~~~~~~Rl~~~L~ 158 (250)
T 3e6c_C 137 YAR-QVAEMNTYNPTIRILRLFY 158 (250)
T ss_dssp HHH-HHHHHTTSCHHHHHHHHHH
T ss_pred HHH-HHHHHhcCCHHHHHHHHHH
Confidence 445 6677778889999887774
No 48
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.42 E-value=1.3e-12 Score=124.95 Aligned_cols=142 Identities=12% Similarity=0.075 Sum_probs=107.5
Q ss_pred HHHHHHHHhccc---eeeecCCCEEEccCCCCCeEEEEEeeEEEEEeec-CCcccccccccCCCCCccccccccCCCCee
Q 038306 281 EATLDALCDCVK---PAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSK-SRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 281 ~~~l~~l~~~l~---~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
+++++.+..... .+.|++|++|+++|+.++.+|||.+|.|+++..+ +| ++.++.++.+|++|
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G--------------~~~~l~~~~~g~~~ 95 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAG--------------EEITVALLRENSVF 95 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTC--------------CEEEEEEECTTCEE
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCC--------------CEEEEEEecCCCEE
Confidence 677888888888 9999999999999999999999999999999754 33 34458999999999
Q ss_pred chhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHHHHHHHHHHHHhhhc
Q 038306 357 GEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAARVIQDAWRRYHTRRN 436 (494)
Q Consensus 357 Ge~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~rr~ 436 (494)
|+.+++ ...+ .++.++++|+++|+++.|++++|.++ +..+|. +. ......+........+ +.
T Consensus 96 G~~~~~---~~~~----~~~~~~~~A~~~~~v~~i~~~~~~~l-----~~~~p~--~~---~~l~~~l~~~l~~~~~-~~ 157 (243)
T 3la7_A 96 GVLSLL---TGNK----SDRFYHAVAFTPVELLSAPIEQVEQA-----LKENPE--LS---MLMLRGLSSRILQTEM-MI 157 (243)
T ss_dssp SCHHHH---SSCC----SBCCEEEEESSSEEEEEEEHHHHHHH-----HTTCHH--HH---HHHHHHHHHHHHHHHH-HH
T ss_pred cchHHh---CCCC----CcceEEEEEccceEEEEEcHHHHHHH-----HHHCHH--HH---HHHHHHHHHHHHHHHH-HH
Confidence 999874 2221 12447899999999999999999999 665554 22 1222223333344444 66
Q ss_pred cchhhhhccchhhhhhhh
Q 038306 437 STRSTGEIDSSLQVAISQ 454 (494)
Q Consensus 437 ~~~~~~~~e~r~~~~~~~ 454 (494)
..+...++++|+++.|-.
T Consensus 158 ~~l~~~~~~~Rla~~L~~ 175 (243)
T 3la7_A 158 ETLAHRDMGSRLVSFLLI 175 (243)
T ss_dssp HHHHCSSHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHH
Confidence 677778899999877653
No 49
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.42 E-value=1.4e-12 Score=127.80 Aligned_cols=120 Identities=20% Similarity=0.277 Sum_probs=101.4
Q ss_pred HHHHHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeec-CCcccccccccCCCCC
Q 038306 264 ELCLDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSK-SRASGSARFNNHRDND 342 (494)
Q Consensus 264 ~l~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~t~~f~~~~~~~ 342 (494)
.+...++.++++|..+++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++... ++.
T Consensus 153 ~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~------------- 219 (291)
T 2qcs_B 153 KMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENE------------- 219 (291)
T ss_dssp HHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTS-------------
T ss_pred HHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCC-------------
Confidence 344567888999999999999999999999999999999999999999999999999998643 221
Q ss_pred ccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCCh
Q 038306 343 NKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSE 410 (494)
Q Consensus 343 ~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~ 410 (494)
++.++..+.+|++||+.+++ .. .+|+++++|.++|+++.|++++|.++ +..+|.
T Consensus 220 ~~~~~~~l~~G~~fGe~~ll---~~------~~~~~tv~a~~~~~~~~i~~~~f~~~-----l~~~p~ 273 (291)
T 2qcs_B 220 EFVEVGRLGPSDYFGEIALL---MN------RPKAATVVARGPLKCVKLDRPRFERV-----LGPCSD 273 (291)
T ss_dssp CEEEEEEECTTCEECSGGGT---CC------CCCSSEEEEEEEEEEEEEEHHHHHHH-----HCCHHH
T ss_pred ccEEEEEeCCCCEecHHHHc---CC------CCcceEEEECCcEEEEEEcHHHHHHH-----hccHHH
Confidence 23448899999999999874 22 23778999999999999999999999 555554
No 50
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.38 E-value=1.1e-12 Score=134.30 Aligned_cols=117 Identities=20% Similarity=0.279 Sum_probs=100.8
Q ss_pred HHHHHHHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCC
Q 038306 262 KRELCLDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDN 341 (494)
Q Consensus 262 ~~~l~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~ 341 (494)
...++..++.++++|..+++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+.+.
T Consensus 242 ~~~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~------------ 309 (381)
T 4din_B 242 KRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPN------------ 309 (381)
T ss_dssp HHHHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSS------------
T ss_pred HHHHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCC------------
Confidence 34556778999999999999999999999999999999999999999999999999999999753211
Q ss_pred CccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHH
Q 038306 342 DNKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNV 399 (494)
Q Consensus 342 ~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~l 399 (494)
.++.++..+.+|++||+.+++ .. .+|+++++|.++|+++.|++++|.++
T Consensus 310 ~~~~~v~~l~~Gd~fGe~all---~~------~~r~~tv~A~~~~~ll~i~~~~f~~l 358 (381)
T 4din_B 310 EEYVEVGRLGPSDYFGEIALL---LN------RPRAATVVARGPLKCVKLDRPRFERV 358 (381)
T ss_dssp SCCCEEEEECTTCEECTTGGG---SC------CBCSSEEEESSCBEEEEEEHHHHHHH
T ss_pred CceEEEEEeCCCCEechHHHh---CC------CCceeEEEEcCCEEEEEEeHHHHHHH
Confidence 023348899999999999884 22 24788999999999999999999999
No 51
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.38 E-value=2.3e-12 Score=122.72 Aligned_cols=145 Identities=12% Similarity=0.113 Sum_probs=106.1
Q ss_pred hcCcHHHHHHHHh--ccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeec-CCcccccccccCCCCCccccccccCCC
Q 038306 277 KKLDEATLDALCD--CVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSK-SRASGSARFNNHRDNDNKSKKDHLKDG 353 (494)
Q Consensus 277 ~~~s~~~l~~l~~--~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~t~~f~~~~~~~~e~~~~~l~~G 353 (494)
++++++.+..++. .++.+.|++|++|+++|+.++++|||.+|.|+++..+ +| ++.++..+ +|
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G--------------~e~~~~~~-~G 66 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENG--------------TIMNLQYY-KG 66 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTS--------------CEEEEEEE-ES
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCC--------------CEEEEEEc-CC
Confidence 4688888998885 5999999999999999999999999999999999754 33 34457888 99
Q ss_pred CeechhhhhhhcCCCCCCCCCCcccEEEEc-ceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHHHHHHHHHHHH
Q 038306 354 DFCGEELVAWAMDDPSSSNLPISTRTIQAL-TKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAARVIQDAWRRYH 432 (494)
Q Consensus 354 ~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~-~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~ 432 (494)
++||+.+++ ...+. ++..++.|+ ++|+++.|++++|.++ +..+|. +. ......+........
T Consensus 67 ~~~Ge~~~~---~~~~~----~~~~~~~a~~~~~~v~~i~~~~~~~l-----~~~~p~--~~---~~~~~~l~~~l~~~~ 129 (238)
T 2bgc_A 67 AFVIMSGFI---DTETS----VGYYNLEVISEQATAYVIKINELKEL-----LSKNLT--HF---FYVFQTLQKQVSYSL 129 (238)
T ss_dssp SEEEESBCT---TTCCB----SCCCEEEECSSEEEEEEEEHHHHHHH-----HHHCHH--HH---HHHHHHHHHHHHHHH
T ss_pred CEecchhhh---cCCCc----CcceeEEEEEcceEEEEEeHHHHHHH-----HHHCHH--HH---HHHHHHHHHHHHHHH
Confidence 999999763 22210 013578888 5999999999999999 555554 22 122223333344445
Q ss_pred hhhccchhhhhccchhhhhhhh
Q 038306 433 TRRNSTRSTGEIDSSLQVAISQ 454 (494)
Q Consensus 433 ~rr~~~~~~~~~e~r~~~~~~~ 454 (494)
+ +...+...++++|+++.|-.
T Consensus 130 ~-~~~~~~~~~~~~Rla~~L~~ 150 (238)
T 2bgc_A 130 A-KFNDFSINGKLGSICSQLLI 150 (238)
T ss_dssp H-HHHHHHTTHHHHHHHHHHHH
T ss_pred H-HHHHHHccCHHHHHHHHHHH
Confidence 5 67777888899999977754
No 52
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.36 E-value=8.3e-13 Score=135.23 Aligned_cols=109 Identities=17% Similarity=0.271 Sum_probs=97.1
Q ss_pred HHHHHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCc
Q 038306 264 ELCLDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDN 343 (494)
Q Consensus 264 ~l~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~ 343 (494)
....+.+.++++|++++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++.. ++.
T Consensus 126 ~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~~--~~~------------- 190 (381)
T 4din_B 126 TALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVN--GEW------------- 190 (381)
T ss_dssp HHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEET--TEE-------------
T ss_pred HHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEEC--CeE-------------
Confidence 34467899999999999999999999999999999999999999999999999999999962 221
Q ss_pred cccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHH
Q 038306 344 KSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNV 399 (494)
Q Consensus 344 e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~l 399 (494)
+..+.+|++||+.+++. . .+|.++++|.++|+++.|++++|.++
T Consensus 191 ---v~~l~~G~~fGe~all~---~------~~r~atv~A~~~~~l~~i~~~~f~~l 234 (381)
T 4din_B 191 ---VTNISEGGSFGELALIY---G------TPRAATVKAKTDLKLWGIDRDSYRRI 234 (381)
T ss_dssp ---EEEEESSCCBCGGGGTS---C------CBCSSEEEESSSCEEEEEEHHHHHHH
T ss_pred ---eeeCCCCCEEEchHHhc---C------CCcceEEEECCCEEEEEEchHHHHHh
Confidence 77899999999998742 2 24778999999999999999999999
No 53
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.36 E-value=7.4e-12 Score=105.51 Aligned_cols=60 Identities=17% Similarity=0.335 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 038306 143 KLLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQIYLQSKTIR 202 (494)
Q Consensus 143 ~Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~~~~~ 202 (494)
.|..|+||+++|+|||||||++|.|..+++++++.+++|..++++.++.+++.+...+..
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~ 108 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSIL 108 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999999999999999999988654433
No 54
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.34 E-value=3.4e-12 Score=132.17 Aligned_cols=117 Identities=12% Similarity=0.212 Sum_probs=95.6
Q ss_pred HHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCcccc
Q 038306 267 LDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSK 346 (494)
Q Consensus 267 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~ 346 (494)
..++.++++|..++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+.+... ....++.+
T Consensus 266 ~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~-------~~~g~~~~ 338 (416)
T 3tnp_B 266 ESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSE-------VEENGAVE 338 (416)
T ss_dssp SSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC-------------------CE
T ss_pred HHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCccc-------ccCCceeE
Confidence 34677889999999999999999999999999999999999999999999999999965421000 00113456
Q ss_pred ccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHH
Q 038306 347 KDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNV 399 (494)
Q Consensus 347 ~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~l 399 (494)
+..+.+|++||+.+++ .. .+|+++++|.++|+++.|++++|.++
T Consensus 339 l~~l~~G~~fGE~all---~~------~~r~~tv~A~~~~~ll~I~~~~f~~l 382 (416)
T 3tnp_B 339 IARCFRGQYFGELALV---TN------KPRAASAHAIGTVKCLAMDVQAFERL 382 (416)
T ss_dssp EEEECTTCEESGGGGT---CC------SCCSSEEEEEEEEEEEEEEHHHHHHH
T ss_pred EEEeCCCCEecHHHHh---CC------CCceeEEEEcCCeEEEEEEHHHHHHH
Confidence 8999999999999874 22 24788999999999999999999999
No 55
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.32 E-value=4.5e-12 Score=132.99 Aligned_cols=116 Identities=12% Similarity=0.134 Sum_probs=99.5
Q ss_pred HHHHHHhhhchhhhcCcHHHHHHHHhccce-eeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCC
Q 038306 264 ELCLDLLKKVEEFKKLDEATLDALCDCVKP-AFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDND 342 (494)
Q Consensus 264 ~l~~~~l~~i~~F~~~s~~~l~~l~~~l~~-~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~ 342 (494)
....+.+.++++|.+++++.+..++..++. +.|++|++|+++||.++.+|||.+|.|+++..+. .
T Consensus 333 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~--~------------ 398 (469)
T 1o7f_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK--G------------ 398 (469)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTT--E------------
T ss_pred HHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCC--e------------
Confidence 344678999999999999999999999985 4899999999999999999999999999986422 1
Q ss_pred ccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcc-eEEEEEeCHHHHHHHHhhcccccCCh
Q 038306 343 NKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALT-KVEAFALMADDLKNVFINHQLCTYSE 410 (494)
Q Consensus 343 ~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~-~~~l~~is~~df~~ll~~~~~~~~~~ 410 (494)
++..+.+|++||+.+++ .. .++.++++|.+ +|+++.|++++|.++ +..+|.
T Consensus 399 ---~~~~l~~G~~fGe~~ll---~~------~~~~~tv~a~~~~~~~~~i~~~~f~~l-----l~~~p~ 450 (469)
T 1o7f_A 399 ---VVCTLHEGDDFGKLALV---ND------APRAASIVLREDNCHFLRVDKEDFNRI-----LRDVEA 450 (469)
T ss_dssp ---EEEEEETTCEECGGGGT---CC------SCCSSEEEESSSSEEEEEEEHHHHHHH-----HHHTTC
T ss_pred ---eEEEecCCCEEEEehhh---cC------CCceEEEEEecCCEEEEEEcHHHHHHH-----HHHChH
Confidence 28899999999999874 22 24788999998 799999999999999 666665
No 56
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.31 E-value=3.2e-12 Score=146.51 Aligned_cols=123 Identities=19% Similarity=0.199 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHhhhchhhhcCcHHHHHHHHhccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccc
Q 038306 257 LRRNIKRELCLDLLKKVEEFKKLDEATLDALCDCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFN 336 (494)
Q Consensus 257 Lr~ei~~~l~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~ 336 (494)
-|.+=-.++-...|+++++|+++++..+.+|+..|+.+.|.+|++|+++||.++.+|+|.+|.|.++..+.+..
T Consensus 31 ~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~------ 104 (999)
T 4f7z_A 31 ERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSH------ 104 (999)
T ss_dssp SCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCT------
T ss_pred cCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCC------
Confidence 34333334445678999999999999999999999999999999999999999999999999999997542221
Q ss_pred cCCCCCccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHH
Q 038306 337 NHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVF 400 (494)
Q Consensus 337 ~~~~~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll 400 (494)
..+.++..+.+|+.||+ ++++ . .+|+++++|.++|++++|++++|..++
T Consensus 105 -----~~~~~v~~l~~G~sFGE-all~---n------~pRtaTv~a~~~s~l~~l~r~~F~~i~ 153 (999)
T 4f7z_A 105 -----QDAVTICTLGIGTAFGE-SILD---N------TPRHATIVTRESSELLRIEQEDFKALW 153 (999)
T ss_dssp -----TSCEEEEEEETTCEECG-GGGG---T------CCCSSEEEESSSEEEEEEEHHHHHHHH
T ss_pred -----CCceeEEEecCCcchhh-hhcc---C------CCcceEEEeccceEEEEEEHHHHHHHH
Confidence 13456889999999999 5542 1 248899999999999999999999995
No 57
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.28 E-value=1.3e-12 Score=108.24 Aligned_cols=60 Identities=8% Similarity=0.164 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 038306 143 KLLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQIYLQSKTIR 202 (494)
Q Consensus 143 ~Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~~~~~ 202 (494)
.|..|+||++.|+|||||||++|.+..+++++++.+++|..+++++++.+++.+.+..++
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~ 99 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREEE 99 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999999999999999999999999999999999988765443
No 58
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.25 E-value=1.9e-11 Score=112.68 Aligned_cols=119 Identities=16% Similarity=0.158 Sum_probs=88.6
Q ss_pred eeecCCCEEEccCCCCCeEEEEEeeEEEEEeec-CCcccccccccCCCCCccccccccCCCCeechhhhhhhcCCCCCCC
Q 038306 294 AFFIERAHIVREDYPIDEMLFVVQGKLWNYTSK-SRASGSARFNNHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSSN 372 (494)
Q Consensus 294 ~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~-~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~ 372 (494)
+.|++|++|+++|++++.+|||.+|.|+++..+ +| ++.++..+.+|++||+ +++ ..
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g--------------~~~~~~~~~~G~~~Ge-~~~---~~----- 58 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDG--------------RLITLRHVLPGDYFGE-EAL---EG----- 58 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTS--------------CEEEEEEECTTCEECG-GGG---TC-----
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCC--------------CEEEEEEecCCCEech-hhh---CC-----
Confidence 578999999999999999999999999999754 33 3445889999999999 874 22
Q ss_pred CCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHHHHHHHHHHHHhhhccchhhhhccchhhhhh
Q 038306 373 LPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAARVIQDAWRRYHTRRNSTRSTGEIDSSLQVAI 452 (494)
Q Consensus 373 ~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~rr~~~~~~~~~e~r~~~~~ 452 (494)
.++.++++|.++|+++.|++++|. |.+. ......+........+ +...+...++++|+++.|
T Consensus 59 -~~~~~~~~A~~~~~v~~i~~~~~~-------------p~~~---~~~~~~l~~~l~~~~~-~~~~l~~~~~~~Rl~~~L 120 (195)
T 3b02_A 59 -KAYRYTAEAMTEAVVQGLEPRAMD-------------HEAL---HRVARNLARQMRRVQA-YEAHLQTGELRARIARYL 120 (195)
T ss_dssp -SBCSSEEEESSSEEEEEECGGGCC-------------HHHH---HHHHHHHHHHHHHHHH-HHHHHTSSCHHHHHHHHH
T ss_pred -CCceeEEEECCcEEEEEEcHHHcC-------------HHHH---HHHHHHHHHHHHHHHH-HHHHHhcCCHHHHHHHHH
Confidence 236779999999999999999876 2222 1222222333344444 666677788889988665
Q ss_pred h
Q 038306 453 S 453 (494)
Q Consensus 453 ~ 453 (494)
.
T Consensus 121 ~ 121 (195)
T 3b02_A 121 L 121 (195)
T ss_dssp H
T ss_pred H
Confidence 4
No 59
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.22 E-value=2.7e-11 Score=132.90 Aligned_cols=126 Identities=11% Similarity=0.116 Sum_probs=103.9
Q ss_pred HHhhhccHHHHHHHHHHHHHHHhhhchhhhcCcHHHHHHHHhccc-eeeecCCCEEEccCCCCCeEEEEEeeEEEEEeec
Q 038306 248 NLISNLPRDLRRNIKRELCLDLLKKVEEFKKLDEATLDALCDCVK-PAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSK 326 (494)
Q Consensus 248 ~il~~Lp~~Lr~ei~~~l~~~~l~~i~~F~~~s~~~l~~l~~~l~-~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~ 326 (494)
.++... +..|.+-......+.+.++++|.+++++.+..++..++ .+.|++|++|+++||.++.+|||.+|.|+++..+
T Consensus 13 ~iL~k~-p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~g 91 (694)
T 3cf6_E 13 MILRKP-PGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYG 91 (694)
T ss_dssp HHHHSC-GGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEETT
T ss_pred HHHcCC-hhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEeC
Confidence 345433 33454444455577899999999999999999999998 7899999999999999999999999999998642
Q ss_pred CCcccccccccCCCCCccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcc-eEEEEEeCHHHHHHHH
Q 038306 327 SRASGSARFNNHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALT-KVEAFALMADDLKNVF 400 (494)
Q Consensus 327 ~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~-~~~l~~is~~df~~ll 400 (494)
. . ++..+.+|++||+.+++. + .++.++++|.+ +|+++.|++++|.+++
T Consensus 92 -~-~---------------il~~l~~Gd~fGe~al~~---~------~~~~~tv~A~edd~~ll~I~~~~f~~ll 140 (694)
T 3cf6_E 92 -K-G---------------VVCTLHEGDDFGKLALVN---D------APRAASIVLREDNCHFLRVDKEDFNRIL 140 (694)
T ss_dssp -T-E---------------EEEEEETTCEECHHHHHH---T------CBCSSEEEECSSSEEEEEEEHHHHHHHT
T ss_pred -C-E---------------EEEEeCCCCEeehHHHhC---C------CCceEEEEEeeCceEEEEEeHHHHHHHH
Confidence 1 1 288999999999998752 1 13678999999 5999999999999995
No 60
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.21 E-value=1.1e-10 Score=95.33 Aligned_cols=55 Identities=16% Similarity=0.318 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038306 144 LLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQIYLQS 198 (494)
Q Consensus 144 Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~ 198 (494)
|..|+||+++|+|||||||+.|.+..+++++++.+++|..+++++++.++..++.
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~ 87 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 87 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6789999999999999999999999999999999999999999999999988763
No 61
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.17 E-value=5.7e-11 Score=93.90 Aligned_cols=54 Identities=11% Similarity=0.305 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038306 143 KLLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQIYL 196 (494)
Q Consensus 143 ~Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il 196 (494)
.|..|+||+++|+|||||||+.|.|..+++++++.+++|..++++.++.+++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999999999998875
No 62
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.16 E-value=1.2e-10 Score=133.42 Aligned_cols=111 Identities=12% Similarity=0.107 Sum_probs=96.1
Q ss_pred HHHHHHhhhchhhhcCcHHHHHHHHhccceee-ecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCC
Q 038306 264 ELCLDLLKKVEEFKKLDEATLDALCDCVKPAF-FIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDND 342 (494)
Q Consensus 264 ~l~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~-~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~ 342 (494)
+...+.+.+++.|.+++...+..++..+.... +..|++|+++||.++.+|||.+|.|+|+...++
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~-------------- 398 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKG-------------- 398 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTE--------------
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCc--------------
Confidence 44567789999999999999999999999765 577999999999999999999999999864322
Q ss_pred ccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcce-EEEEEeCHHHHHHHH
Q 038306 343 NKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTK-VEAFALMADDLKNVF 400 (494)
Q Consensus 343 ~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~-~~l~~is~~df~~ll 400 (494)
.+..+++|++||+.+++ .+ .+|.+||+|.++ |++++|+|+||.+++
T Consensus 399 ---~v~~L~~Gd~FGElALL---~~------~PR~aTV~a~~d~c~fl~i~k~df~~il 445 (999)
T 4f7z_A 399 ---VVCTLHEGDDFGKLALV---ND------APRAASIVLREDNCHFLRVDKEDGNRIL 445 (999)
T ss_dssp ---EEEEEETTCEECGGGGT---CS------CBCSSEEEESSSSEEEEEEEHHHHHHHH
T ss_pred ---ceEEecCCCcccchhhc---cC------CCeeEEEEEecCceEEEEeeHHHHHHHH
Confidence 17889999999999984 33 258899999985 999999999999999
No 63
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.14 E-value=5.9e-11 Score=109.84 Aligned_cols=125 Identities=15% Similarity=0.135 Sum_probs=88.2
Q ss_pred HHhccceeeecCCCEEEccCCCC--CeEEEEEeeEEEEEeec-CCcccccccccCCCCCccccccccCCCCeechhhhhh
Q 038306 287 LCDCVKPAFFIERAHIVREDYPI--DEMLFVVQGKLWNYTSK-SRASGSARFNNHRDNDNKSKKDHLKDGDFCGEELVAW 363 (494)
Q Consensus 287 l~~~l~~~~~~~ge~I~~~Ge~~--~~lyfI~~G~v~v~~~~-~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fGe~~l~~ 363 (494)
+...++.+.|++|++|+++|+++ +.+|||.+|.|+++..+ +| ++.++..+.+|++||+ +++.
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G--------------~~~~~~~~~~g~~~G~-~~l~ 65 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEG--------------NALTLRLVRPGGFFGE-EALF 65 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTS--------------CEEEEEEECTTCEECT-HHHH
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCC--------------cEEEEEEecCCCEeee-hhcC
Confidence 35678899999999999999999 99999999999999754 33 3445889999999999 6642
Q ss_pred hcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHhhcccccCChhhhhhhhhhHHHHHHHHHHHHHhhhccchhhhh
Q 038306 364 AMDDPSSSNLPISTRTIQALTKVEAFALMADDLKNVFINHQLCTYSELNWKNLMTQAARVIQDAWRRYHTRRNSTRSTGE 443 (494)
Q Consensus 364 ~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~~ll~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~rr~~~~~~~~ 443 (494)
.. ++.++++|+++|+++.| +++|. |.+. ......+........+ +...+...+
T Consensus 66 ---~~------~~~~~~~A~~~~~v~~i-~~~~~-------------p~~~---~~~~~~l~~~l~~~~~-~~~~~~~~~ 118 (202)
T 2zcw_A 66 ---GQ------ERIYFAEAATDVRLEPL-PENPD-------------PELL---KDLAQHLSQGLAEAYR-RIERLATQR 118 (202)
T ss_dssp ---TC------CBCSEEEESSCEEEEEC-CSSCC-------------HHHH---HHHHHHHHHHHHHHHH-HHHHHHHCC
T ss_pred ---CC------CcceEEEEcccEEEEEE-hHhcC-------------HHHH---HHHHHHHHHHHHHHHH-HHHHHhcCC
Confidence 11 35679999999999999 87754 2222 1112222233334444 666777788
Q ss_pred ccchhhhhhh
Q 038306 444 IDSSLQVAIS 453 (494)
Q Consensus 444 ~e~r~~~~~~ 453 (494)
+++|+++.|-
T Consensus 119 ~~~Rl~~~L~ 128 (202)
T 2zcw_A 119 LKNRMAAALL 128 (202)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8899886654
No 64
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.07 E-value=4.8e-12 Score=114.09 Aligned_cols=62 Identities=10% Similarity=0.386 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 038306 142 QKLLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQIYLQSKTIRS 203 (494)
Q Consensus 142 ~~Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~~~~~~ 203 (494)
..|..|+||+++|+|||||||++|.|..+++++++.+++|++++++++|.+++.+.......
T Consensus 66 ~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~ 127 (166)
T 3pjs_K 66 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQ 127 (166)
T ss_dssp CSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHH
T ss_pred CCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999887655433
No 65
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.00 E-value=1e-09 Score=107.90 Aligned_cols=56 Identities=11% Similarity=0.207 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038306 143 KLLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQIYLQS 198 (494)
Q Consensus 143 ~Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~ 198 (494)
.|..|+||++.|+|||||||++|.+...++++++.+++|++++|+++|.+.+.+..
T Consensus 82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~ 137 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 137 (301)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46799999999999999999999999999999999999999999999988887753
No 66
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.97 E-value=6.3e-10 Score=110.67 Aligned_cols=57 Identities=14% Similarity=0.241 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038306 143 KLLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQIYLQSK 199 (494)
Q Consensus 143 ~Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~~ 199 (494)
.|..|+||++.|+|||||||++|.+...++++++.+++|++++|+++|.+.+.+...
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~ 152 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARP 152 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999999999999999999887644
No 67
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.92 E-value=3.3e-09 Score=104.00 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038306 143 KLLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQIYLQSK 199 (494)
Q Consensus 143 ~Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~~ 199 (494)
.|..|+||+++|+|||||||++|.|...++|+++.+++|+.+++++++.++..+...
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~ 171 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS 171 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999999999999999999988643
No 68
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.78 E-value=8.5e-09 Score=102.16 Aligned_cols=57 Identities=16% Similarity=0.288 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038306 143 KLLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQIYLQSK 199 (494)
Q Consensus 143 ~Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~~ 199 (494)
.|..|+||++.|+|||||||+.|.+...++++++.+++|++++|+++|.+.+.+...
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~ 134 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQP 134 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999887754
No 69
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.73 E-value=8.3e-08 Score=95.23 Aligned_cols=59 Identities=12% Similarity=0.289 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhhccCCCcccccC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038306 143 KLLHCFFWGLQSLSCLGQNLNTST--YIWEDFFAILITISGLMLFLFLIGNMQIYLQSKTI 201 (494)
Q Consensus 143 ~Yl~slYwai~t~ttvGyGdi~p~--t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~~~~ 201 (494)
.+..++||++.|+|||||||+.|+ +..-++++++.+++|.++.|+.+|.+.+-+..-.+
T Consensus 91 sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ 151 (340)
T 3sya_A 91 GFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKK 151 (340)
T ss_dssp STTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred CHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 345899999999999999999996 67889999999999999999999988887765443
No 70
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.68 E-value=7.1e-08 Score=103.61 Aligned_cols=53 Identities=17% Similarity=0.324 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 038306 144 LLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGN-MQIYL 196 (494)
Q Consensus 144 Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~-i~~il 196 (494)
|..|+||+++|+|||||||++|.|..+++++++++++|++++++.++. +.+.+
T Consensus 52 ~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999988 44443
No 71
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.64 E-value=1.9e-08 Score=98.61 Aligned_cols=60 Identities=13% Similarity=0.184 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhccCCCcccccCchhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 038306 144 LLHCFFWGLQSLSCLGQNLNTSTYIWED------FFAILITISGLMLFLFLIGNMQIYLQSKTIRS 203 (494)
Q Consensus 144 Yl~slYwai~t~ttvGyGdi~p~t~~E~------~~~i~~~i~G~~~~ayiig~i~~il~~~~~~~ 203 (494)
|+.|+||++.|+|||||||++|.+...+ +++++++++|..+++++++.+++.+....++.
T Consensus 225 ~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r~ 290 (309)
T 3um7_A 225 KLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRRT 290 (309)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTC
T ss_pred HHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7799999999999999999999998886 59999999999999999999999887766544
No 72
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.64 E-value=4.9e-08 Score=94.33 Aligned_cols=55 Identities=15% Similarity=0.234 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038306 143 KLLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQIYLQ 197 (494)
Q Consensus 143 ~Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il~ 197 (494)
.|..|+||+++|+|||||||++|.|...++|+++.+++|+.+++++++.++..+.
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~ 147 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRIT 147 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999887554
No 73
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.55 E-value=3.6e-07 Score=90.80 Aligned_cols=58 Identities=16% Similarity=0.381 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhhccCCCcccccC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038306 143 KLLHCFFWGLQSLSCLGQNLNTST--YIWEDFFAILITISGLMLFLFLIGNMQIYLQSKT 200 (494)
Q Consensus 143 ~Yl~slYwai~t~ttvGyGdi~p~--t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~~~ 200 (494)
.+..+|||++.|+|||||||+.|+ +..-++++++.+++|.++.|..+|.+.+-+..-.
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~ 153 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPK 153 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred CHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 467899999999999999999864 7889999999999999999999998887776543
No 74
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.52 E-value=6e-08 Score=93.69 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhccCCCcccccCchh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038306 143 KLLHCFFWGLQSLSCLGQNLNTSTYIW-------EDFFAILITISGLMLFLFLIGNMQIYLQS 198 (494)
Q Consensus 143 ~Yl~slYwai~t~ttvGyGdi~p~t~~-------E~~~~i~~~i~G~~~~ayiig~i~~il~~ 198 (494)
.|+.|+||++.|+|||||||+.|.+.. -++++++.+++|..+++++++.+++++..
T Consensus 201 s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~ 263 (280)
T 3ukm_A 201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHEL 263 (280)
T ss_dssp CHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHH
T ss_pred chhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999998885 49999999999999999999999887653
No 75
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=98.51 E-value=1.2e-07 Score=92.71 Aligned_cols=61 Identities=10% Similarity=-0.019 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhhccCCCc-ccc-cCchhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038306 141 PQKLLHCFFWGLQSLSCLGQN-LNT-STYIWE----DFFAILITISGLMLFLFLIGNMQIYLQSKTI 201 (494)
Q Consensus 141 ~~~Yl~slYwai~t~ttvGyG-di~-p~t~~E----~~~~i~~~i~G~~~~ayiig~i~~il~~~~~ 201 (494)
+.-+..|+||++.|+||+||| |+. |.+..- ..|.+++++.|.++.+..+|.+.+-+.....
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~ 244 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ 244 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345669999999999999999 985 665543 7888999999999999999988887665443
No 76
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.40 E-value=2e-08 Score=100.74 Aligned_cols=56 Identities=11% Similarity=0.339 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038306 144 LLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQIYLQSK 199 (494)
Q Consensus 144 Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~~ 199 (494)
|..|+||+++|+|||||||+.|.|..+++++++++++|..+++++++.++..+...
T Consensus 46 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44789999999999999999999999999999999999999999999998877643
No 77
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=96.79 E-value=0.0056 Score=57.26 Aligned_cols=54 Identities=15% Similarity=0.170 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhccCCCccccc----CchhhHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 038306 143 KLLHCFFWGLQSLSCLGQNLNTS----TYIWEDFFAI-LITISGLMLFLFLIGNMQIYL 196 (494)
Q Consensus 143 ~Yl~slYwai~t~ttvGyGdi~p----~t~~E~~~~i-~~~i~G~~~~ayiig~i~~il 196 (494)
..-.|++|.+.++|+.|++|+-. .+..-.+|-+ ++.+.+.++....++-+.+-.
T Consensus 165 ~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f 223 (229)
T 4dxw_A 165 DLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVV 223 (229)
T ss_dssp SHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34589999999999999999721 1222233333 333333455555555444433
No 78
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=64.57 E-value=21 Score=28.51 Aligned_cols=67 Identities=12% Similarity=0.117 Sum_probs=44.7
Q ss_pred cceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCeechhhhhhhcCCCCC
Q 038306 291 VKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSS 370 (494)
Q Consensus 291 l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~ 370 (494)
+....++||..+-.--....++++|.+|.+++...+ + ...+.+|+.+--- ..
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~~--~-----------------~~~l~~Gd~i~ip-------~~-- 89 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVDG--A-----------------QRRLHQGDLLYLG-------AG-- 89 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEETT--E-----------------EEEECTTEEEEEC-------TT--
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEECC--E-----------------EEEECCCCEEEEC-------CC--
Confidence 344567888887655556679999999999987632 1 5678898886322 11
Q ss_pred CCCCCcccEEEEcceEEEEE
Q 038306 371 SNLPISTRTIQALTKVEAFA 390 (494)
Q Consensus 371 ~~~~~r~~tv~A~~~~~l~~ 390 (494)
..-.+++.+++.++.
T Consensus 90 -----~~H~~~~~~~~~~~~ 104 (114)
T 3fjs_A 90 -----AAHDVNAITNTSLLV 104 (114)
T ss_dssp -----CCEEEEESSSEEEEE
T ss_pred -----CcEEEEeCCCcEEEE
Confidence 123677788876554
No 79
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=64.11 E-value=21 Score=32.49 Aligned_cols=68 Identities=13% Similarity=0.199 Sum_probs=50.6
Q ss_pred cceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCeechhhhhhhcCCCCC
Q 038306 291 VKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSS 370 (494)
Q Consensus 291 l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~ 370 (494)
+....+.||+.+-..-.+.+.+++|++|.+++...+ + ...+.+|+++=-- ..
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~~--~-----------------~~~l~~Gd~~~~p-------~~-- 90 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIEN--N-----------------KKTISNGDFLEIT-------AN-- 90 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEESS--C-----------------EEEEETTEEEEEC-------SS--
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEECC--E-----------------EEEECCCCEEEEC-------CC--
Confidence 345568999999877778899999999999998642 2 5677898886211 11
Q ss_pred CCCCCcccEEEEcceEEEEEe
Q 038306 371 SNLPISTRTIQALTKVEAFAL 391 (494)
Q Consensus 371 ~~~~~r~~tv~A~~~~~l~~i 391 (494)
....++|.++|.++.+
T Consensus 91 -----~~H~~~a~~~~~~l~i 106 (227)
T 3rns_A 91 -----HNYSIEARDNLKLIEI 106 (227)
T ss_dssp -----CCEEEEESSSEEEEEE
T ss_pred -----CCEEEEECCCcEEEEE
Confidence 2347889999999977
No 80
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=59.75 E-value=9.4 Score=41.77 Aligned_cols=55 Identities=9% Similarity=0.140 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhccCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038306 143 KLLHCFFWGLQSLSCLGQNLNTSTYIWEDFFAILITISGLMLFLFLIGNMQIYLQS 198 (494)
Q Consensus 143 ~Yl~slYwai~t~ttvGyGdi~p~t~~E~~~~i~~~i~G~~~~ayiig~i~~il~~ 198 (494)
....+++|++.++++.| ++..|.+...+++.+++++++.++.+...+++++.+..
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45678999999999988 78899999999999999999999999999999999874
No 81
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=56.51 E-value=26 Score=27.60 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=29.3
Q ss_pred ecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 296 FIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 296 ~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
+.+|..+-.-.....++++|.+|.+.+...+ + ...+.+|+.+
T Consensus 45 ~~~g~~~~~H~h~~~e~~~vl~G~~~~~i~~--~-----------------~~~l~~Gd~i 86 (114)
T 2ozj_A 45 FADGESVSEEEYFGDTLYLILQGEAVITFDD--Q-----------------KIDLVPEDVL 86 (114)
T ss_dssp EETTSSCCCBCCSSCEEEEEEEEEEEEEETT--E-----------------EEEECTTCEE
T ss_pred ECCCCccccEECCCCeEEEEEeCEEEEEECC--E-----------------EEEecCCCEE
Confidence 5566654433445678999999999987532 2 5578899886
No 82
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=54.49 E-value=38 Score=26.49 Aligned_cols=67 Identities=12% Similarity=0.071 Sum_probs=42.5
Q ss_pred ceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCeechhhhhhhcCCCCCC
Q 038306 292 KPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSS 371 (494)
Q Consensus 292 ~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~ 371 (494)
....+.||..+-.--....++++|.+|.+.+... + + ...+.+|+.+--- ..
T Consensus 43 ~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~~-~-~-----------------~~~l~~Gd~~~ip-------~~--- 93 (115)
T 1yhf_A 43 TVFSLDKGQEIGRHSSPGDAMVTILSGLAEITID-Q-E-----------------TYRVAEGQTIVMP-------AG--- 93 (115)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEESEEEEEET-T-E-----------------EEEEETTCEEEEC-------TT---
T ss_pred EEEEECCCCccCCEECCCcEEEEEEeCEEEEEEC-C-E-----------------EEEECCCCEEEEC-------CC---
Confidence 4455778877644333467999999999998753 2 1 4567888887321 11
Q ss_pred CCCCcccEEEEcceEEEEEe
Q 038306 372 NLPISTRTIQALTKVEAFAL 391 (494)
Q Consensus 372 ~~~~r~~tv~A~~~~~l~~i 391 (494)
..-.+++.++++++.+
T Consensus 94 ----~~H~~~~~~~~~~~~v 109 (115)
T 1yhf_A 94 ----IPHALYAVEAFQMLLV 109 (115)
T ss_dssp ----SCEEEEESSCEEEEEE
T ss_pred ----CCEEEEECCCceEEEE
Confidence 1225667777777654
No 83
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=49.32 E-value=23 Score=31.96 Aligned_cols=17 Identities=12% Similarity=0.028 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 038306 56 LYLLAAHVFGALWYFFS 72 (494)
Q Consensus 56 ~~~~~~H~~aC~w~~i~ 72 (494)
..+++.|+.||+||++.
T Consensus 139 ~~~~~~~~~~~~~~~~e 155 (223)
T 1orq_C 139 AVMLTVLYGAFAIYIVE 155 (223)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44467899999998876
No 84
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=48.51 E-value=49 Score=25.81 Aligned_cols=67 Identities=13% Similarity=0.013 Sum_probs=42.5
Q ss_pred ceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCeechhhhhhhcCCCCCC
Q 038306 292 KPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSS 371 (494)
Q Consensus 292 ~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~ 371 (494)
....+.||..+-.--....++++|.+|.+.+... + + ...+.+|+.+--- ..
T Consensus 37 ~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~-~-~-----------------~~~l~~Gd~~~ip-------~~--- 87 (116)
T 2pfw_A 37 VKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNVD-G-V-----------------IKVLTAGDSFFVP-------PH--- 87 (116)
T ss_dssp EEEEECTTEEEEEECCSSEEEEEEEEECEEEEET-T-E-----------------EEEECTTCEEEEC-------TT---
T ss_pred EEEEECCCCcCCcEECCcceEEEEEeeEEEEEEC-C-E-----------------EEEeCCCCEEEEC-------cC---
Confidence 4455778876533233467899999999998762 2 2 5678899886211 11
Q ss_pred CCCCcccEEEEcceEEEEEe
Q 038306 372 NLPISTRTIQALTKVEAFAL 391 (494)
Q Consensus 372 ~~~~r~~tv~A~~~~~l~~i 391 (494)
..-.+++.+++.++.+
T Consensus 88 ----~~H~~~~~~~~~~l~v 103 (116)
T 2pfw_A 88 ----VDHGAVCPTGGILIDT 103 (116)
T ss_dssp ----CCEEEEESSCEEEEEE
T ss_pred ----CceeeEeCCCcEEEEE
Confidence 1225667778877766
No 85
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=48.05 E-value=29 Score=28.06 Aligned_cols=44 Identities=14% Similarity=0.258 Sum_probs=31.7
Q ss_pred eeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCeec
Q 038306 294 AFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFCG 357 (494)
Q Consensus 294 ~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fG 357 (494)
..+.||..+-.. ...+++++|++|.+++.. + ++ ...+.+||.+-
T Consensus 45 ~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~-~-g~-----------------~~~l~~GD~v~ 88 (119)
T 3lwc_A 45 GRYAPGQSLTET-MAVDDVMIVLEGRLSVST-D-GE-----------------TVTAGPGEIVY 88 (119)
T ss_dssp EEECTTCEEEEE-CSSEEEEEEEEEEEEEEE-T-TE-----------------EEEECTTCEEE
T ss_pred EEECCCCCcCcc-CCCCEEEEEEeCEEEEEE-C-CE-----------------EEEECCCCEEE
Confidence 446777665433 367899999999999986 2 32 55788999873
No 86
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=47.10 E-value=45 Score=26.09 Aligned_cols=46 Identities=17% Similarity=0.120 Sum_probs=32.8
Q ss_pred ceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCeec
Q 038306 292 KPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFCG 357 (494)
Q Consensus 292 ~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fG 357 (494)
-...+.||..-.. ....++++|++|.+.+...++ + ...+.+||.+-
T Consensus 34 ~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~~g-~-----------------~~~l~~GD~i~ 79 (101)
T 1o5u_A 34 PIWEKEVSEFDWY--YDTNETCYILEGKVEVTTEDG-K-----------------KYVIEKGDLVT 79 (101)
T ss_dssp CEEEECSEEEEEE--CSSCEEEEEEEEEEEEEETTC-C-----------------EEEEETTCEEE
T ss_pred EEEEeCCCccccc--CCceEEEEEEeCEEEEEECCC-C-----------------EEEECCCCEEE
Confidence 3455677776544 456899999999999876422 2 56788999873
No 87
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=44.37 E-value=23 Score=28.42 Aligned_cols=48 Identities=21% Similarity=0.162 Sum_probs=31.8
Q ss_pred cceeeecCCCEEEccCCC-CCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 291 VKPAFFIERAHIVREDYP-IDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 291 l~~~~~~~ge~I~~~Ge~-~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
+....+.||..+-.--.. ..++++|++|.+++...++ + ...+.+|+.+
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~~-~-----------------~~~l~~Gd~~ 89 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNG-I-----------------VTHLKAGDIA 89 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECSTT-C-----------------EEEEETTEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEECCC-e-----------------EEEeCCCCEE
Confidence 334557788776443344 3688999999999875232 2 5567888876
No 88
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=44.08 E-value=25 Score=27.23 Aligned_cols=46 Identities=17% Similarity=0.136 Sum_probs=31.9
Q ss_pred ceeeecCCCEEEcc--CCC-CCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 292 KPAFFIERAHIVRE--DYP-IDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 292 ~~~~~~~ge~I~~~--Ge~-~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
....+.||..+-.. -.. ..++++|.+|.+.+...+ + ...+.+|+.+
T Consensus 24 ~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~~--~-----------------~~~l~~Gd~~ 72 (113)
T 2gu9_A 24 AEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVDG--H-----------------TQALQAGSLI 72 (113)
T ss_dssp EEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEETT--E-----------------EEEECTTEEE
T ss_pred EEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEECC--E-----------------EEEeCCCCEE
Confidence 34457888876543 333 679999999999987632 1 4567788876
No 89
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=42.28 E-value=21 Score=31.30 Aligned_cols=61 Identities=15% Similarity=0.268 Sum_probs=38.8
Q ss_pred CCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcc-eE
Q 038306 308 PIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALT-KV 386 (494)
Q Consensus 308 ~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~-~~ 386 (494)
..++++++++|.+.+-..++|+.. ...+.+|++|=-- . +.+ -+-++-+ +|
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~---------------~v~l~eGE~f~lP--------~---gvp---H~P~r~~~e~ 104 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRE---------------RADLKEGDIFLLP--------P---HVR---HSPQRPEAGS 104 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEE---------------EEEECTTCEEEEC--------T---TCC---EEEEBCCTTC
T ss_pred CCceEEEEEeeEEEEEEEcCCcee---------------eEEECCCCEEEeC--------C---CCC---cCccccCCCC
Confidence 457999999999999877654222 5678899998321 1 111 1334455 67
Q ss_pred EEEEeCHHHHH
Q 038306 387 EAFALMADDLK 397 (494)
Q Consensus 387 ~l~~is~~df~ 397 (494)
..+.+.+..-.
T Consensus 105 ~~lviE~~r~~ 115 (174)
T 1yfu_A 105 ACLVIERQRPA 115 (174)
T ss_dssp EEEEEEECCCT
T ss_pred EEEEEEeCCCC
Confidence 77777665443
No 90
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=42.21 E-value=31 Score=26.04 Aligned_cols=46 Identities=9% Similarity=0.052 Sum_probs=31.0
Q ss_pred ceeeecCCCEEEccCCC-CCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 292 KPAFFIERAHIVREDYP-IDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 292 ~~~~~~~ge~I~~~Ge~-~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
....+.||..+-.--.. .+++++|.+|.+.+... + + ...+.+|+.+
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~-~-~-----------------~~~l~~Gd~~ 77 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVG-E-E-----------------EALLAPGMAA 77 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEET-T-E-----------------EEEECTTCEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEEC-C-E-----------------EEEeCCCCEE
Confidence 34457788776433333 35799999999998753 2 1 5567888876
No 91
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=41.67 E-value=28 Score=27.86 Aligned_cols=47 Identities=11% Similarity=0.085 Sum_probs=33.1
Q ss_pred cceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 291 VKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 291 l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
+....+.||..+-.--....++++|.+|.+++...+ + ...+.+|+.+
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~--~-----------------~~~l~~Gd~~ 89 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTIGE--E-----------------TRVLRPGMAY 89 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEETT--E-----------------EEEECTTEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEECC--E-----------------EEEeCCCCEE
Confidence 344567788776544444578999999999987632 1 5677888876
No 92
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=38.05 E-value=21 Score=31.17 Aligned_cols=51 Identities=14% Similarity=0.120 Sum_probs=34.9
Q ss_pred cceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 291 VKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 291 l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
+....+.||.....-...++++++|++|.+++...+.+... ...+.+||.+
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~---------------~~~l~~GDv~ 93 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD---------------TYKLDQGDAI 93 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEE---------------EEEEETTEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcE---------------EEEECCCCEE
Confidence 44556788877654444568999999999988764322111 5578899887
No 93
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=37.89 E-value=37 Score=35.20 Aligned_cols=18 Identities=0% Similarity=0.010 Sum_probs=0.0
Q ss_pred HHHHhhhccHHHHHHHHH
Q 038306 246 VENLISNLPRDLRRNIKR 263 (494)
Q Consensus 246 e~~il~~Lp~~Lr~ei~~ 263 (494)
.+.-..+|.+.++.++..
T Consensus 469 ~~s~~~el~e~~~~~~~~ 486 (514)
T 2r9r_B 469 SKSDYMEIQEGVNNSNED 486 (514)
T ss_dssp ------------------
T ss_pred cccccccccccccccccc
Confidence 334456666666665544
No 94
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=36.53 E-value=19 Score=29.49 Aligned_cols=43 Identities=12% Similarity=0.026 Sum_probs=29.2
Q ss_pred ecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCeec
Q 038306 296 FIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFCG 357 (494)
Q Consensus 296 ~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fG 357 (494)
..||..-.+..+ .+++++|++|.+.+...+ |+ ...+.+||.+-
T Consensus 56 ~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~~-g~-----------------~~~l~~GD~~~ 98 (123)
T 3bcw_A 56 STSGSFQSNTTG-YIEYCHIIEGEARLVDPD-GT-----------------VHAVKAGDAFI 98 (123)
T ss_dssp EEEEEEECCCTT-EEEEEEEEEEEEEEECTT-CC-----------------EEEEETTCEEE
T ss_pred ECCCceeeEcCC-CcEEEEEEEEEEEEEECC-Ce-----------------EEEECCCCEEE
Confidence 445555543322 279999999999998643 32 55788999874
No 95
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=36.20 E-value=23 Score=28.87 Aligned_cols=43 Identities=12% Similarity=0.106 Sum_probs=29.3
Q ss_pred ecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCeec
Q 038306 296 FIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFCG 357 (494)
Q Consensus 296 ~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fG 357 (494)
..||..-... +..+++++|++|.+.+...++ + ...+++||.|-
T Consensus 49 ~tPG~~~~~~-~~~~E~~~iLeG~~~lt~ddG-~-----------------~~~l~aGD~~~ 91 (116)
T 3es4_A 49 AEPGIYNYAG-RDLEETFVVVEGEALYSQADA-D-----------------PVKIGPGSIVS 91 (116)
T ss_dssp ECSEEEEECC-CSEEEEEEEEECCEEEEETTC-C-----------------CEEECTTEEEE
T ss_pred cCCceeECee-CCCcEEEEEEEeEEEEEeCCC-e-----------------EEEECCCCEEE
Confidence 3455554443 223589999999999987543 2 56788999874
No 96
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=35.82 E-value=23 Score=29.36 Aligned_cols=7 Identities=14% Similarity=0.581 Sum_probs=2.5
Q ss_pred HHHHhhh
Q 038306 25 VIRIYPL 31 (494)
Q Consensus 25 Llr~~rl 31 (494)
++|+.|+
T Consensus 102 v~Rvlkl 108 (132)
T 1ors_C 102 LLRFLRI 108 (132)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 97
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=33.42 E-value=40 Score=29.00 Aligned_cols=45 Identities=13% Similarity=-0.038 Sum_probs=30.6
Q ss_pred eeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 293 PAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 293 ~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
...+.||..+-.--....++++|.+|.+.+...+ + ...+.+|+++
T Consensus 60 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~~--~-----------------~~~l~~Gd~i 104 (167)
T 3ibm_A 60 YFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLDD--R-----------------VEPLTPLDCV 104 (167)
T ss_dssp EEEECTTCBCCCBBCSSCEEEEEEESEEEEEETT--E-----------------EEEECTTCEE
T ss_pred EEEECCCCCCCCccCCCcEEEEEEeCEEEEEECC--E-----------------EEEECCCCEE
Confidence 3456666654333335679999999999987532 1 5677888887
No 98
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=32.89 E-value=18 Score=27.77 Aligned_cols=47 Identities=15% Similarity=0.072 Sum_probs=30.2
Q ss_pred eeeecCCCEEEccCCCCC-eEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 293 PAFFIERAHIVREDYPID-EMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 293 ~~~~~~ge~I~~~Ge~~~-~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
...+.||...-.--.... ++++|.+|.+++...++.+ ...+.+|+.+
T Consensus 22 ~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~-----------------~~~l~~Gd~~ 69 (97)
T 2fqp_A 22 EWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSV-----------------TSQLTRGVSY 69 (97)
T ss_dssp EEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEEE-----------------EEEECTTCCE
T ss_pred EEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCCE-----------------EEEEcCCCEE
Confidence 455677765422222333 5999999999987643211 5678888887
No 99
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=32.24 E-value=27 Score=30.58 Aligned_cols=91 Identities=13% Similarity=0.089 Sum_probs=52.2
Q ss_pred HHHHHHHhccce----eeecCCCEEEc-cC----------CCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCcccc
Q 038306 282 ATLDALCDCVKP----AFFIERAHIVR-ED----------YPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSK 346 (494)
Q Consensus 282 ~~l~~l~~~l~~----~~~~~ge~I~~-~G----------e~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~ 346 (494)
+.+++....+++ +....+++++. -| +..++++++++|.+.+-..++|.-. .+..
T Consensus 12 ~wl~e~~~~~~PPV~Nk~v~~~~~~V~~vgGPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~-----------~~~~ 80 (176)
T 1zvf_A 12 KWLKENEGLLKPPVNNYCLHKGGFTVMIVGGPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAE-----------PKFI 80 (176)
T ss_dssp HHHHHHGGGGSSSSCEEEEECSSEEEEEECSSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSS-----------CEEE
T ss_pred HHHHHhHhhcCCCcCCEEEecCCEEEEEEcCCCcCCcCcCCCCceEEEEEeCEEEEEEEcCCCcc-----------ccee
Confidence 345666677777 44434666542 22 2346899999999999877644100 0011
Q ss_pred ccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHH
Q 038306 347 KDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEAFALMADDLK 397 (494)
Q Consensus 347 ~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~is~~df~ 397 (494)
...+.+|++|=-- .. .+. +-++-.++..+.+.+..-.
T Consensus 81 dv~i~eGdmfllP-------~g----vpH---sP~r~~e~v~lviErkR~~ 117 (176)
T 1zvf_A 81 DIIINEGDSYLLP-------GN----VPH---SPVRFADTVGIVVEQDRPG 117 (176)
T ss_dssp EEEECTTEEEEEC-------TT----CCE---EEEECTTCEEEEEEECCCS
T ss_pred eEEECCCCEEEcC-------CC----CCc---CCcccCCcEEEEEEecCCC
Confidence 5678899998321 11 111 3334567777777665443
No 100
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=32.16 E-value=58 Score=29.55 Aligned_cols=43 Identities=14% Similarity=0.040 Sum_probs=28.3
Q ss_pred ecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 296 FIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 296 ~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
+.||-..=.--...+++|+|++|.+++...+++ ...+++|+.+
T Consensus 139 l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~g~------------------~~~l~pGd~v 181 (217)
T 4b29_A 139 WGPGLDYGWHEHLPEELYSVVSGRALFHLRNAP------------------DLMLEPGQTR 181 (217)
T ss_dssp ECSSCEEEEEECSSEEEEEEEEECEEEEETTSC------------------CEEECTTCEE
T ss_pred ECCCCcCCCCCCCCceEEEEEeCCEEEEECCCC------------------EEecCCCCEE
Confidence 344433322234567999999999988764332 5677888886
No 101
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=31.76 E-value=41 Score=26.50 Aligned_cols=31 Identities=6% Similarity=0.049 Sum_probs=20.0
Q ss_pred eecCCCEEEccCCCCCeEEEEEeeEEEEEee
Q 038306 295 FFIERAHIVREDYPIDEMLFVVQGKLWNYTS 325 (494)
Q Consensus 295 ~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~ 325 (494)
.+.||..+-.--....++++|.+|.+.+...
T Consensus 33 ~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~ 63 (117)
T 2b8m_A 33 VLPRGEQMPKHYSNSYVHLIIIKGEMTLTLE 63 (117)
T ss_dssp EEETTCBCCCEECSSCEEEEEEESEEEEEET
T ss_pred EECCCCcCCCEeCCCcEEEEEEeCEEEEEEC
Confidence 4556654322222456899999999988763
No 102
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=31.47 E-value=38 Score=29.65 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=30.5
Q ss_pred eecCCCEEE---ccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 295 FFIERAHIV---REDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 295 ~~~~ge~I~---~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
.+.||...- .-.....++++|++|.+++...+++... ...+.+||.+
T Consensus 123 ~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~---------------~~~l~~GD~~ 172 (198)
T 2bnm_A 123 DVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPK---------------EALLPTGASM 172 (198)
T ss_dssp EECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCE---------------EEEECTTCEE
T ss_pred EEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcc---------------cEEECCCCEE
Confidence 456665433 1223446899999999999875422111 5678899987
No 103
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=30.39 E-value=79 Score=23.71 Aligned_cols=51 Identities=16% Similarity=0.170 Sum_probs=33.1
Q ss_pred CCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEE
Q 038306 309 IDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTKVEA 388 (494)
Q Consensus 309 ~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l 388 (494)
..++++|.+|.+.+...+ . ...+.+|+.+--- +. ..-.+.+.++|.+
T Consensus 50 ~~e~~~v~~G~~~~~~~~-~------------------~~~l~~Gd~~~ip-------~~-------~~H~~~~~~~~~~ 96 (102)
T 3d82_A 50 TDEVFIVMEGTLQIAFRD-Q------------------NITLQAGEMYVIP-------KG-------VEHKPMAKEECKI 96 (102)
T ss_dssp CCEEEEEEESEEEEECSS-C------------------EEEEETTEEEEEC-------TT-------CCBEEEEEEEEEE
T ss_pred CcEEEEEEeCEEEEEECC-E------------------EEEEcCCCEEEEC-------CC-------CeEeeEcCCCCEE
Confidence 378999999999887532 1 4567788876211 11 1124556678888
Q ss_pred EEeC
Q 038306 389 FALM 392 (494)
Q Consensus 389 ~~is 392 (494)
+.++
T Consensus 97 l~i~ 100 (102)
T 3d82_A 97 MIIE 100 (102)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8775
No 104
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=29.92 E-value=96 Score=27.91 Aligned_cols=68 Identities=13% Similarity=0.146 Sum_probs=45.6
Q ss_pred cceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCeechhhhhhhcCCCCC
Q 038306 291 VKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSS 370 (494)
Q Consensus 291 l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~ 370 (494)
+....+.||..+-..-...+++++|.+|.+++... + + ...+.+|+.+=-- ..
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~-g-~-----------------~~~l~~Gd~i~ip-------~~-- 206 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYVD-G-K-----------------PFIVKKGESAVLP-------AN-- 206 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEET-T-E-----------------EEEEETTEEEEEC-------TT--
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEEC-C-E-----------------EEEECCCCEEEEC-------CC--
Confidence 44566889988765555567899999999998753 2 2 5677888886321 11
Q ss_pred CCCCCcccEEEE-cceEEEEEe
Q 038306 371 SNLPISTRTIQA-LTKVEAFAL 391 (494)
Q Consensus 371 ~~~~~r~~tv~A-~~~~~l~~i 391 (494)
....+.+ .++++++.+
T Consensus 207 -----~~H~~~~~~~~~~~ll~ 223 (227)
T 3rns_A 207 -----IPHAVEAETENFKMLLI 223 (227)
T ss_dssp -----SCEEEECCSSCEEEEEE
T ss_pred -----CcEEEEeCCCCEEEEEE
Confidence 1235777 788877643
No 105
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=29.68 E-value=19 Score=30.68 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHh
Q 038306 13 LKFLVFFQYVPRVIRIYPLFTKAT 36 (494)
Q Consensus 13 l~~~~l~~~l~RLlr~~rl~~~~~ 36 (494)
+++++++| +.|++|+.|+.+.++
T Consensus 106 lr~lRvlR-llRv~Rllrl~r~~~ 128 (147)
T 2kyh_A 106 LAGLGLFR-LVRLLRFLRILLIIS 128 (147)
T ss_dssp HHHHTCCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHH
Confidence 44555555 555555555544443
No 106
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=29.63 E-value=36 Score=28.67 Aligned_cols=67 Identities=9% Similarity=0.037 Sum_probs=40.4
Q ss_pred EccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEE
Q 038306 303 VREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQA 382 (494)
Q Consensus 303 ~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A 382 (494)
++..+..|++|+|++|.+.+...+++... .+.-...+.+|+++--- +.- --+-.|
T Consensus 44 ~h~H~~tDE~Fivl~G~l~i~~rd~~~~~-----------~~d~~V~l~~Ge~yvVP--------kGv------eH~p~a 98 (140)
T 3d0j_A 44 LEIHHSTDEQFILSAGKAILITAEKENDK-----------FNIELTLMEKGKVYNVP--------AEC------WFYSIT 98 (140)
T ss_dssp EEEESSCCEEEEEEESCEEEEEEEEETTE-----------EEEEEEECCTTCCEEEC--------TTC------EEEEEE
T ss_pred hccCCCCCeEEEEEecEEEEEEecCcCCC-----------CccceEEecCCCEEEeC--------CCc------cCcccC
Confidence 34556779999999999999876421100 00115677898887321 111 113456
Q ss_pred cceEEEEEeCHH
Q 038306 383 LTKVEAFALMAD 394 (494)
Q Consensus 383 ~~~~~l~~is~~ 394 (494)
.++|.++.+...
T Consensus 99 ~~e~~vLLiEp~ 110 (140)
T 3d0j_A 99 QKDTKMMYVQDS 110 (140)
T ss_dssp CTTCEEEEEEES
T ss_pred CCceEEEEEEeC
Confidence 777888777654
No 107
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=29.52 E-value=42 Score=26.58 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=23.9
Q ss_pred CCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 307 YPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 307 e~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
...+++++|++|.+++...++.. ...+.+||.+
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~~~-----------------~~~l~~Gd~i 83 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGDTA-----------------PRVMRPGDWL 83 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTCSS-----------------CEEECTTEEE
T ss_pred CCccEEEEEEeCeEEEEECCEEE-----------------EEEECCCCEE
Confidence 35568999999999987643210 1578899887
No 108
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=29.41 E-value=37 Score=28.75 Aligned_cols=10 Identities=30% Similarity=0.544 Sum_probs=3.6
Q ss_pred HHHHHHHhhh
Q 038306 22 VPRVIRIYPL 31 (494)
Q Consensus 22 l~RLlr~~rl 31 (494)
+.|++|+.|.
T Consensus 117 v~Rllrl~r~ 126 (147)
T 2kyh_A 117 LLRFLRILLI 126 (147)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 109
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=28.86 E-value=71 Score=26.57 Aligned_cols=45 Identities=24% Similarity=0.300 Sum_probs=30.6
Q ss_pred eeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccc-cccCCCCee
Q 038306 293 PAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKK-DHLKDGDFC 356 (494)
Q Consensus 293 ~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~-~~l~~G~~f 356 (494)
...+.||..+-.--....++++|.+|.+.+...+ . . ..+.+|+.+
T Consensus 52 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~-~------------------~~~~l~~Gd~i 97 (147)
T 2f4p_A 52 DVVFEPGARTHWHSHPGGQILIVTRGKGFYQERG-K------------------PARILKKGDVV 97 (147)
T ss_dssp EEEECTTCEECSEECTTCEEEEEEEEEEEEEETT-S------------------CCEEEETTCEE
T ss_pred EEEECCCCccCceECCCceEEEEEeCEEEEEECC-E------------------EEEEECCCCEE
Confidence 4456777765332334478999999999987532 1 3 567888887
No 110
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=28.42 E-value=37 Score=29.65 Aligned_cols=46 Identities=9% Similarity=0.030 Sum_probs=29.5
Q ss_pred eeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 293 PAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 293 ~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
...++||...-.--....+..+|++|.+++...++. ...+.+||.+
T Consensus 83 ~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~ge------------------~~~L~~GDsi 128 (172)
T 3es1_A 83 VVDMLPGKESPMHRTNSIDYGIVLEGEIELELDDGA------------------KRTVRQGGII 128 (172)
T ss_dssp EEEECTTCBCCCBCCSEEEEEEEEESCEEEECGGGC------------------EEEECTTCEE
T ss_pred EEEECCCCCCCCeecCceEEEEEEeCEEEEEECCCe------------------EEEECCCCEE
Confidence 345666653322222334688999999999764322 5678899998
No 111
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=28.27 E-value=76 Score=24.21 Aligned_cols=46 Identities=11% Similarity=0.000 Sum_probs=29.9
Q ss_pred eeeecCCCEEEccCCC-CCeE-EEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 293 PAFFIERAHIVREDYP-IDEM-LFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 293 ~~~~~~ge~I~~~Ge~-~~~l-yfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
...+.||..+-.--.. ..++ ++|.+|.+++...++. ...+.+|+.+
T Consensus 37 ~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~~~------------------~~~l~~Gd~~ 84 (110)
T 2q30_A 37 SFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDGDA------------------VIPAPRGAVL 84 (110)
T ss_dssp EEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGGGC------------------EEEECTTEEE
T ss_pred EEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCCCE------------------EEEECCCCEE
Confidence 3456788766433223 2466 8999999988753222 5678898876
No 112
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=27.51 E-value=47 Score=26.70 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=28.9
Q ss_pred eeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 294 AFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 294 ~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
..+.||...-.--....++++|.+|.+++...+ + ...+.+|+++
T Consensus 53 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~--~-----------------~~~l~~Gd~i 96 (126)
T 1vj2_A 53 FTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQ--G-----------------EETVEEGFYI 96 (126)
T ss_dssp EEEEEEEEEEEECCSSCEEEEEEESEEEEECSS--C-----------------EEEEETTEEE
T ss_pred EEECCCCcCCceeCCCcEEEEEEEeEEEEEECC--E-----------------EEEECCCCEE
Confidence 345566554332334679999999999887532 1 4567788876
No 113
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=26.69 E-value=37 Score=29.30 Aligned_cols=44 Identities=11% Similarity=0.026 Sum_probs=29.1
Q ss_pred eeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 294 AFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 294 ~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
..+.||..+-.--....++++|.+|.+++... + + ...+.+|+++
T Consensus 58 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v~-g-~-----------------~~~l~~GD~i 101 (166)
T 3jzv_A 58 FEVGPGGHSTLERHQHAHGVMILKGRGHAMVG-R-A-----------------VSAVAPYDLV 101 (166)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEECEEEEET-T-E-----------------EEEECTTCEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEEC-C-E-----------------EEEeCCCCEE
Confidence 34556655433334456899999999998753 2 2 5677888876
No 114
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=26.26 E-value=38 Score=28.85 Aligned_cols=43 Identities=12% Similarity=0.043 Sum_probs=28.4
Q ss_pred eecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 295 FFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 295 ~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
.+.||..+-.--....++++|.+|.+++... + + ...+.+|+++
T Consensus 50 ~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v~-g-~-----------------~~~l~~Gd~i 92 (156)
T 3kgz_A 50 EVDEGGYSTLERHAHVHAVMIHRGHGQCLVG-E-T-----------------ISDVAQGDLV 92 (156)
T ss_dssp EEEEEEECCCBBCSSCEEEEEEEEEEEEEET-T-E-----------------EEEEETTCEE
T ss_pred EECCCCccCceeCCCcEEEEEEeCEEEEEEC-C-E-----------------EEEeCCCCEE
Confidence 3456554433333456899999999998753 2 2 5567788876
No 115
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=26.19 E-value=41 Score=28.76 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=29.9
Q ss_pred eeeecCCCEE--EccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 293 PAFFIERAHI--VREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 293 ~~~~~~ge~I--~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
...+.||... .+.....+++++|++|.+++...+ + ...+.+|+.+
T Consensus 47 ~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~~--~-----------------~~~l~~GD~i 93 (163)
T 3i7d_A 47 LVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDDQ--G-----------------EHPMVPGDCA 93 (163)
T ss_dssp EEEECTTCBSSSSEEESSCCEEEEEEESCEEEEETT--E-----------------EEEECTTCEE
T ss_pred EEEECCCCcCCCCccCCCCcEEEEEEECEEEEEECC--E-----------------EEEeCCCCEE
Confidence 4556777644 222233479999999999988632 1 5567788876
No 116
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=26.08 E-value=23 Score=27.61 Aligned_cols=37 Identities=8% Similarity=0.005 Sum_probs=25.3
Q ss_pred cceeeecCCCEEEccCCCCC-eEEEEEeeEEEEEeecC
Q 038306 291 VKPAFFIERAHIVREDYPID-EMLFVVQGKLWNYTSKS 327 (494)
Q Consensus 291 l~~~~~~~ge~I~~~Ge~~~-~lyfI~~G~v~v~~~~~ 327 (494)
.+...++||+-+-..-...+ ..|+|.+|.+++...++
T Consensus 19 V~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~ 56 (98)
T 3lag_A 19 VTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDG 56 (98)
T ss_dssp EEEEEECTTEECCSEECCSCEEEEESSCBC-CEECTTS
T ss_pred EEEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCCC
Confidence 45567889988765544444 67888899999876543
No 117
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=25.86 E-value=39 Score=28.53 Aligned_cols=46 Identities=15% Similarity=0.095 Sum_probs=30.7
Q ss_pred ceeeecCCCE-E-EccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 292 KPAFFIERAH-I-VREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 292 ~~~~~~~ge~-I-~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
....+.||.. . .+......++++|++|.+.+...+ + ...+.+||++
T Consensus 49 ~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~~--~-----------------~~~l~~Gd~i 96 (162)
T 3l2h_A 49 HLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTMEN--D-----------------QYPIAPGDFV 96 (162)
T ss_dssp EEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEETT--E-----------------EEEECTTCEE
T ss_pred EEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEECC--E-----------------EEEeCCCCEE
Confidence 3455777763 2 222235679999999999987532 1 5567888886
No 118
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=24.23 E-value=57 Score=26.55 Aligned_cols=45 Identities=13% Similarity=0.129 Sum_probs=30.2
Q ss_pred eeeecCCCEEEccCCC-CCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 293 PAFFIERAHIVREDYP-IDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 293 ~~~~~~ge~I~~~Ge~-~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
...+.||..+-.--.. ..++++|.+|.+.+... ++ ...+.+|+.+
T Consensus 61 ~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~--~~-----------------~~~l~~Gd~i 106 (133)
T 1o4t_A 61 RMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDN--GK-----------------DVPIKAGDVC 106 (133)
T ss_dssp EEEECTTCEEEEEECCSEEEEEEEEESEEEEEET--TE-----------------EEEEETTEEE
T ss_pred EEEECCCCccCceECCCccEEEEEEeCEEEEEEC--CE-----------------EEEeCCCcEE
Confidence 4457788765322223 36899999999998753 22 5567888886
No 119
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=24.21 E-value=57 Score=26.00 Aligned_cols=44 Identities=16% Similarity=0.186 Sum_probs=28.5
Q ss_pred eeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 294 AFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 294 ~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
..+.||...-.--....++++|.+|.+.+...+ + ...+.+|+++
T Consensus 39 ~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i~~--~-----------------~~~l~~Gd~~ 82 (128)
T 4i4a_A 39 CIVRPETKSFRHSHNEYELFIVIQGNAIIRIND--E-----------------DFPVTKGDLI 82 (128)
T ss_dssp EEECTTEECCCBCCSSEEEEEEEESEEEEEETT--E-----------------EEEEETTCEE
T ss_pred EEECCCCccCCEecCCeEEEEEEeCEEEEEECC--E-----------------EEEECCCcEE
Confidence 345566533222234568999999999887632 1 5567888886
No 120
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=24.13 E-value=83 Score=27.23 Aligned_cols=44 Identities=11% Similarity=0.243 Sum_probs=30.3
Q ss_pred eeecCCCEEEc-c-CCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 294 AFFIERAHIVR-E-DYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 294 ~~~~~ge~I~~-~-Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
..+.||..... . .....++++|++|.+.+... ++ ...+.+||.+
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~--~~-----------------~~~l~~GD~i 154 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFD--EQ-----------------WHELQQGEHI 154 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEET--TE-----------------EEEECTTCEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEEC--CE-----------------EEEeCCCCEE
Confidence 45677776542 1 23346999999999998763 22 5578899987
No 121
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=24.00 E-value=47 Score=33.40 Aligned_cols=52 Identities=15% Similarity=0.113 Sum_probs=37.0
Q ss_pred ccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 290 CVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 290 ~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
.+....+.||..+..--...+++++|++|.+++...+.+... ...+.+||++
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~---------------~~~l~~GDv~ 101 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRD---------------SYNLHPGDAQ 101 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEE---------------EEEECTTEEE
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCe---------------EEEecCCCEE
Confidence 455677889887665555677999999999988754332211 5578888887
No 122
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=23.92 E-value=40 Score=33.68 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=33.0
Q ss_pred ceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 292 KPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 292 ~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
....+.||+.+-.--....++|||++|.-.....++. ...+.+||++
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v~G~------------------~~~~~~GD~i 172 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVDGH------------------KVELGANDFV 172 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEEETTE------------------EEEECTTCEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEEECCE------------------EEEEcCCCEE
Confidence 5567788887755444556899999998755444432 4567899887
No 123
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=23.36 E-value=57 Score=30.82 Aligned_cols=63 Identities=10% Similarity=0.149 Sum_probs=41.6
Q ss_pred CCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcce
Q 038306 306 DYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPISTRTIQALTK 385 (494)
Q Consensus 306 Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r~~tv~A~~~ 385 (494)
-+..+++|++.+|.+.+-..++|+.. ...+.+|++|=- ++ +-+ .+=++-.+
T Consensus 48 ~~~~dE~FyqlkG~m~l~~~d~g~~~---------------~V~i~eGemfll--------P~---gv~---HsP~r~~e 98 (286)
T 2qnk_A 48 IEEGEEVFYQLEGDMVLRVLEQGKHR---------------DVVIRQGEIFLL--------PA---RVP---HSPQRFAN 98 (286)
T ss_dssp ECSSCEEEEEEESCEEEEEEETTEEE---------------EEEECTTEEEEE--------CT---TCC---EEEEECTT
T ss_pred CCCCCeEEEEEeCeEEEEEEeCCcee---------------eEEECCCeEEEe--------CC---CCC---cCCcccCC
Confidence 44578999999999999877644222 467889998831 11 111 23455678
Q ss_pred EEEEEeCHHHHH
Q 038306 386 VEAFALMADDLK 397 (494)
Q Consensus 386 ~~l~~is~~df~ 397 (494)
|..++|.+..-.
T Consensus 99 t~gLviE~~R~~ 110 (286)
T 2qnk_A 99 TVGLVVERRRLE 110 (286)
T ss_dssp CEEEEEEECCCT
T ss_pred eEEEEEeecCCC
Confidence 888888765544
No 124
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=22.47 E-value=31 Score=26.80 Aligned_cols=68 Identities=10% Similarity=0.088 Sum_probs=38.8
Q ss_pred cCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCeechhhhhhhcCCCCCCCCCCc
Q 038306 297 IERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFCGEELVAWAMDDPSSSNLPIS 376 (494)
Q Consensus 297 ~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~r 376 (494)
.+|+...+..+...++++|.+|.+++...+++ ...+.+|+.+--- .. .
T Consensus 36 ~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~~~------------------~~~l~~Gd~~~ip-------~~----~--- 83 (107)
T 2i45_A 36 LLGDYGWHTHGYSDKVLFAVEGDMAVDFADGG------------------SMTIREGEMAVVP-------KS----V--- 83 (107)
T ss_dssp EEEECCCBCC--CCEEEEESSSCEEEEETTSC------------------EEEECTTEEEEEC-------TT----C---
T ss_pred CCCCCcceeCCCCCEEEEEEeCEEEEEECCCc------------------EEEECCCCEEEEC-------CC----C---
Confidence 45543333333338999999999998764312 5678899887211 11 1
Q ss_pred ccEEEEcceEEEEEeCHHHH
Q 038306 377 TRTIQALTKVEAFALMADDL 396 (494)
Q Consensus 377 ~~tv~A~~~~~l~~is~~df 396 (494)
.-.+++.+++.++.++....
T Consensus 84 ~H~~~~~~~~~~l~i~~~~~ 103 (107)
T 2i45_A 84 SHRPRSENGCSLVLIELSDP 103 (107)
T ss_dssp CEEEEEEEEEEEEEEECC--
T ss_pred cEeeEeCCCeEEEEEECCCc
Confidence 12344456788887765443
No 125
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=21.93 E-value=54 Score=33.16 Aligned_cols=53 Identities=13% Similarity=0.001 Sum_probs=37.6
Q ss_pred hccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 289 DCVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 289 ~~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
..+-...+.||..+..--..+++++||++|.+.+...+.+... ...+.+||++
T Consensus 61 ~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~---------------~~~l~~GDv~ 113 (434)
T 2ea7_A 61 YRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRD---------------SYILEQGHAQ 113 (434)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEE---------------EEEEETTEEE
T ss_pred EEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCE---------------EEEeCCCCEE
Confidence 3455677889988766655677999999999988764332111 5567888887
No 126
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=21.70 E-value=70 Score=29.33 Aligned_cols=49 Identities=16% Similarity=0.103 Sum_probs=35.3
Q ss_pred ccceeeecCCCEEEc-cCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCeec
Q 038306 290 CVKPAFFIERAHIVR-EDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFCG 357 (494)
Q Consensus 290 ~l~~~~~~~ge~I~~-~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~fG 357 (494)
.+....++||..+-. .-....+.++|++|.+.+... ++ ...+.+||++-
T Consensus 166 ~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~~--~~-----------------~~~l~~GD~~~ 215 (246)
T 1sfn_A 166 MVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLE--EN-----------------YYPVTAGDIIW 215 (246)
T ss_dssp EEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEET--TE-----------------EEEEETTCEEE
T ss_pred EEEEEEECCCCccCcccCCCceEEEEEEECEEEEEEC--CE-----------------EEEcCCCCEEE
Confidence 455667889877653 445567999999999988752 22 55788999873
No 127
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=21.22 E-value=66 Score=27.10 Aligned_cols=54 Identities=9% Similarity=-0.045 Sum_probs=31.5
Q ss_pred eeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 293 PAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 293 ~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
...+.||..+-.--....++++|.+|.+.+...+++++. ..+.....+.+|+++
T Consensus 45 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~----------~~~~~~~~l~~Gd~i 98 (163)
T 1lr5_A 45 LQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKY----------PGQPQEIPFFQNTTF 98 (163)
T ss_dssp EEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSS----------CCSCEEEEECTTEEE
T ss_pred EEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccc----------cCccEEEEeCCCCEE
Confidence 445667765422122356799999999998875422100 001115678898886
No 128
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=20.92 E-value=81 Score=28.75 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=25.8
Q ss_pred cceeeecCCCEEEccCCCCCeEEEEEeeEEEEEe
Q 038306 291 VKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYT 324 (494)
Q Consensus 291 l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~ 324 (494)
+....+.||..+-.--....++++|++|.+++..
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~ 69 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV 69 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE
Confidence 4445578888775544557789999999999886
No 129
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=20.72 E-value=1.1e+02 Score=25.36 Aligned_cols=34 Identities=15% Similarity=-0.014 Sum_probs=22.0
Q ss_pred eeeecCCCEEEc-cCCCCCeEEEEEeeEEEEEeec
Q 038306 293 PAFFIERAHIVR-EDYPIDEMLFVVQGKLWNYTSK 326 (494)
Q Consensus 293 ~~~~~~ge~I~~-~Ge~~~~lyfI~~G~v~v~~~~ 326 (494)
...+.||..+-. .-...+++++|++|.+.+...+
T Consensus 47 ~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~ 81 (148)
T 2oa2_A 47 LMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGH 81 (148)
T ss_dssp EEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEES
T ss_pred EEEECCCCccCceECCCCcEEEEEEeCEEEEEECC
Confidence 345667765422 2222458999999999988643
No 130
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=20.70 E-value=68 Score=27.28 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=23.5
Q ss_pred CCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 308 PIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 308 ~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
..+++++|++|.+++.. + |+ ...+.+||.+
T Consensus 83 ~~eE~~yVLeG~~~l~i-~-g~-----------------~~~l~~GD~i 112 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII-D-GR-----------------KVSASSGELI 112 (151)
T ss_dssp SSEEEEEEEEEEEEEEE-T-TE-----------------EEEEETTCEE
T ss_pred CCcEEEEEEEeEEEEEE-C-CE-----------------EEEEcCCCEE
Confidence 45789999999999985 3 32 5678899987
No 131
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=20.18 E-value=58 Score=25.92 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=27.8
Q ss_pred eeeecCCCEEE--ccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 293 PAFFIERAHIV--REDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 293 ~~~~~~ge~I~--~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
...+.||..+- ..-+..+.+|+|.+|.+.+...+ + ...+.+|+++
T Consensus 30 ~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~~--~-----------------~~~l~~Gd~i 76 (125)
T 3cew_A 30 INHLPAGAGVPFVHSHKQNEEIYGILSGKGFITIDG--E-----------------KIELQAGDWL 76 (125)
T ss_dssp EEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEETT--E-----------------EEEEETTEEE
T ss_pred EEEECCCCCCCCCccCCCceEEEEEEeCEEEEEECC--E-----------------EEEeCCCCEE
Confidence 34566776542 22233345777999999887532 1 4567788876
No 132
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=20.16 E-value=1.4e+02 Score=26.18 Aligned_cols=55 Identities=20% Similarity=0.123 Sum_probs=33.6
Q ss_pred cceeeecCCCEEEc-cCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 291 VKPAFFIERAHIVR-EDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 291 l~~~~~~~ge~I~~-~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
+....+.||...-. .....+++++|++|.+++...+++..+ .+.....+.+|+.+
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~-----------~~~~~~~l~~GD~~ 129 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSG-----------NKLYSRVVRAGETF 129 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGT-----------TCEEEEEEETTCEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCC-----------CeEEEEEECCCCEE
Confidence 34456788876532 233357999999999998764331000 01114568899887
No 133
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=20.05 E-value=60 Score=32.92 Aligned_cols=52 Identities=13% Similarity=0.104 Sum_probs=36.6
Q ss_pred ccceeeecCCCEEEccCCCCCeEEEEEeeEEEEEeecCCcccccccccCCCCCccccccccCCCCee
Q 038306 290 CVKPAFFIERAHIVREDYPIDEMLFVVQGKLWNYTSKSRASGSARFNNHRDNDNKSKKDHLKDGDFC 356 (494)
Q Consensus 290 ~l~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~v~~~~~~~~~t~~f~~~~~~~~e~~~~~l~~G~~f 356 (494)
.+-...+.||..+..--..+++++||++|.+++...+.+... ...+.+||++
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~---------------~~~l~~GDv~ 138 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD---------------TYKLDQGDAI 138 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEE---------------EEEEETTEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCE---------------EEEecCCCEE
Confidence 445567888877765555678999999999988754322111 5678888887
Done!