BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038307
         (322 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1T6M|A Chain A, X-Ray Structure Of The R70d Pi-Plc Enzyme: Insight Into
           The Role Of Calcium And Surrounding Amino Acids On
           Active Site Geometry And Catalysis.
 pdb|1T6M|B Chain B, X-Ray Structure Of The R70d Pi-Plc Enzyme: Insight Into
           The Role Of Calcium And Surrounding Amino Acids On
           Active Site Geometry And Catalysis
          Length = 299

 Score = 28.5 bits (62), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 88  YKVNDILDEKVDEVLDTEHRVSCIEQRLRTCQEYIDHEGLSQQSLVINTPKYHKRYILP 146
           YKVN   DEKV  + DT        + L     YI+   LS      N+P Y+  YI P
Sbjct: 201 YKVN--YDEKVKSIKDTMDETMNNSEDLNHL--YINFTSLSSGGTAWNSPYYYASYINP 255


>pdb|2OR2|A Chain A, Structure Of The W47aW242A MUTANT OF BACTERIAL
           Phosphatidylinositol-Specific Phospholipase C
 pdb|2OR2|B Chain B, Structure Of The W47aW242A MUTANT OF BACTERIAL
           Phosphatidylinositol-Specific Phospholipase C
          Length = 296

 Score = 28.5 bits (62), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 88  YKVNDILDEKVDEVLDTEHRVSCIEQRLRTCQEYIDHEGLSQQSLVINTPKYHKRYILP 146
           YKVN   DEKV  + DT        + L     YI+   LS      N+P Y+  YI P
Sbjct: 200 YKVN--YDEKVKSIKDTMDETMNNSEDLNHL--YINFTSLSSGGTAANSPYYYASYINP 254


>pdb|1ST6|A Chain A, Crystal Structure Of A Cytoskeletal Protein
          Length = 1069

 Score = 28.1 bits (61), Expect = 6.4,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 5/45 (11%)

Query: 64  VVETLKDYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRV 108
           VVET++D     LV    +LG    K+  ++DE+  E+   EHRV
Sbjct: 153 VVETMED-----LVTYTKNLGPGMTKMAKMIDERQQELTHQEHRV 192


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.130    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,554,866
Number of Sequences: 62578
Number of extensions: 264490
Number of successful extensions: 559
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 556
Number of HSP's gapped (non-prelim): 31
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)