Query 038307
Match_columns 322
No_of_seqs 88 out of 104
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 09:40:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038307.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038307hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2546 Abl interactor ABI-1, 100.0 9.3E-36 2E-40 292.4 10.4 137 18-156 2-145 (483)
2 KOG2546 Abl interactor ABI-1, 98.8 7.2E-11 1.6E-15 117.8 -8.4 108 35-147 210-329 (483)
3 PF07815 Abi_HHR: Abl-interact 98.5 3.5E-08 7.5E-13 79.1 2.0 43 111-155 1-50 (79)
4 cd00193 t_SNARE Soluble NSF (N 80.0 11 0.00024 26.2 6.7 49 69-117 4-52 (60)
5 KOG1830 Wiskott Aldrich syndro 79.8 3.5 7.5E-05 42.9 5.5 57 66-122 24-81 (518)
6 PF05739 SNARE: SNARE domain; 77.3 15 0.00032 26.6 6.8 46 72-117 5-50 (63)
7 smart00397 t_SNARE Helical reg 76.2 24 0.00053 24.8 8.1 54 64-117 5-58 (66)
8 PF10046 BLOC1_2: Biogenesis o 61.5 86 0.0019 25.6 8.8 51 74-124 38-91 (99)
9 KOG3003 Molecular chaperone of 60.8 34 0.00073 33.0 7.2 72 35-117 87-162 (236)
10 PLN03094 Substrate binding sub 60.0 63 0.0014 32.7 9.3 84 30-116 258-347 (370)
11 PF11945 WASH_WAHD: WAHD domai 58.8 28 0.0006 34.2 6.4 51 72-125 19-69 (297)
12 PF12352 V-SNARE_C: Snare regi 58.6 38 0.00083 25.0 5.8 48 76-123 13-60 (66)
13 KOG3850 Predicted membrane pro 51.7 2.4E+02 0.0051 29.7 11.7 88 22-116 254-341 (455)
14 TIGR02492 flgK_ends flagellar 51.0 1.6E+02 0.0034 28.5 10.0 59 58-117 126-184 (322)
15 PRK07521 flgK flagellar hook-a 47.5 69 0.0015 32.8 7.4 58 59-117 122-179 (483)
16 PRK13182 racA polar chromosome 47.1 2E+02 0.0043 26.2 9.5 60 60-120 85-146 (175)
17 PF05164 ZapA: Cell division p 46.1 31 0.00066 26.4 3.7 69 42-116 21-89 (89)
18 cd07624 BAR_SNX7_30 The Bin/Am 45.7 2.3E+02 0.005 25.6 10.5 41 40-80 68-115 (200)
19 cd07667 BAR_SNX30 The Bin/Amph 44.4 1.1E+02 0.0025 29.3 7.9 54 58-134 155-208 (240)
20 PRK10972 Z-ring-associated pro 42.4 47 0.001 28.4 4.5 71 39-117 22-92 (109)
21 PF01893 UPF0058: Uncharacteri 42.2 46 0.00099 27.7 4.3 34 35-69 4-37 (89)
22 PRK08147 flgK flagellar hook-a 41.0 2E+02 0.0043 29.9 9.6 58 59-117 128-185 (547)
23 PRK07191 flgK flagellar hook-a 40.5 95 0.002 31.6 7.1 59 58-117 126-184 (456)
24 PRK07739 flgK flagellar hook-a 40.2 2.8E+02 0.006 28.8 10.4 59 58-117 138-196 (507)
25 PF10267 Tmemb_cc2: Predicted 40.2 1.4E+02 0.003 30.7 8.2 86 24-116 208-293 (395)
26 PF10481 CENP-F_N: Cenp-F N-te 40.2 2.6E+02 0.0057 28.1 9.7 84 32-117 15-113 (307)
27 PRK06665 flgK flagellar hook-a 39.3 2.6E+02 0.0057 29.9 10.4 59 58-117 138-196 (627)
28 cd07664 BAR_SNX2 The Bin/Amphi 38.5 3.5E+02 0.0076 25.6 11.1 91 29-122 23-136 (234)
29 PRK08471 flgK flagellar hook-a 38.1 1.1E+02 0.0025 32.6 7.5 58 59-117 132-189 (613)
30 PF08397 IMD: IRSp53/MIM homol 36.4 3.3E+02 0.0072 24.8 9.3 64 30-101 143-208 (219)
31 PF15175 SPATA24: Spermatogene 35.8 95 0.0021 28.4 5.6 78 29-117 32-111 (153)
32 COG1745 Predicted metal-bindin 35.2 73 0.0016 27.0 4.5 34 35-68 4-37 (94)
33 PRK06799 flgK flagellar hook-a 33.2 3.7E+02 0.0079 27.4 9.9 58 59-117 132-189 (431)
34 PF12755 Vac14_Fab1_bd: Vacuol 32.4 1.5E+02 0.0033 24.2 5.8 49 68-116 43-92 (97)
35 PRK05683 flgK flagellar hook-a 32.2 3E+02 0.0064 30.0 9.5 59 58-117 126-184 (676)
36 COG1382 GimC Prefoldin, chaper 31.2 1.6E+02 0.0035 25.7 6.1 84 34-124 12-95 (119)
37 PF06013 WXG100: Proteins of 1 30.4 2.1E+02 0.0045 20.5 10.1 66 25-92 11-76 (86)
38 PRK06945 flgK flagellar hook-a 29.7 3.7E+02 0.0079 29.1 9.7 60 58-118 127-186 (651)
39 PF10475 DUF2450: Protein of u 29.0 5.1E+02 0.011 24.6 11.1 35 19-53 51-85 (291)
40 PF12862 Apc5: Anaphase-promot 28.9 2.3E+02 0.0051 22.2 6.3 67 39-129 16-82 (94)
41 PF13901 DUF4206: Domain of un 28.2 1.8E+02 0.0039 26.6 6.2 24 29-52 65-88 (202)
42 KOG0994 Extracellular matrix g 26.9 6.2E+02 0.013 30.5 11.0 51 32-82 1658-1708(1758)
43 PRK08871 flgK flagellar hook-a 26.8 2E+02 0.0043 31.0 7.1 57 59-116 130-186 (626)
44 PF00517 GP41: Retroviral enve 26.4 1.8E+02 0.0039 26.8 5.9 39 86-124 19-64 (204)
45 PRK10869 recombination and rep 26.2 7.1E+02 0.015 26.2 10.8 54 74-131 268-321 (553)
46 TIGR00153 conserved hypothetic 25.7 5E+02 0.011 23.4 10.3 62 28-90 74-140 (216)
47 KOG3065 SNAP-25 (synaptosome-a 25.4 1.8E+02 0.0038 28.6 5.9 45 78-122 86-130 (273)
48 PF04088 Peroxin-13_N: Peroxin 22.1 1E+02 0.0023 27.8 3.4 56 32-98 26-81 (158)
49 COG1256 FlgK Flagellar hook-as 21.3 5.6E+02 0.012 27.4 9.0 19 73-91 162-180 (552)
50 TIGR00634 recN DNA repair prot 20.3 3.2E+02 0.0069 28.5 6.9 54 63-117 311-364 (563)
No 1
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=9.3e-36 Score=292.38 Aligned_cols=137 Identities=20% Similarity=0.264 Sum_probs=133.5
Q ss_pred chHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 038307 18 NYDEVAMQQSLLFSDSLKDLKNLRTQLYSAAEYFELSYTNDDQKQIVVETLKDYAVKALVNTVDHLGSVTYKVNDILDEK 97 (322)
Q Consensus 18 n~~E~~m~~~~~F~~aL~eLkdlrsqL~~aAeYCE~nY~~se~Kq~aLEeTK~YavqALvSVayhIgtVA~kl~~LLd~Q 97 (322)
-++|++|.+.-++++.++.|.+++.||.+||||||+||+|+.+|+++|||||+|++|||++||||||+||+++++|||+|
T Consensus 2 imaelq~lie~eIp~gR~al~~s~~nL~rVadycednYiQs~~kk~aleetk~~ttQslasvaYqIN~la~~~l~mL~lQ 81 (483)
T KOG2546|consen 2 IMAELQSLIESEIPDGRKALRSSYDNLPRVADYCEDNYIQSADKKAALEETKAYTTQSLASVAYQINTLAGHALRMLDLQ 81 (483)
T ss_pred cHHHHHHHHHHhccccHHHHHHHHHhhHhhhhhhhhchhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhchhhhhhHHHHHHH-HHHhhhhhcchhhhhhhccCCCCccccccc------CcccCCCCC
Q 038307 98 VDEVLDTEHRVSCIEQRLRT-CQEYIDHEGLSQQSLVINTPKYHKRYILPV------KYIGCSLDD 156 (322)
Q Consensus 98 ~~evs~~ElrIs~l~QrV~~-cek~a~rEgi~q~~l~k~~pr~HKrYI~p~------kY~R~~i~~ 156 (322)
+.+|..||++|++|+|.|++ +||+|+|| ||.+++|+.+.|+||+ |.|+ +|+|+||+.
T Consensus 82 ~~~L~~mEs~vn~isq~V~ihkekvArre-Ig~lttnk~~~r~hki-Iap~nl~~~iryvrkPid~ 145 (483)
T KOG2546|consen 82 APQLRYMESQVNHISQTVDIHKEKVARRE-IGNLTTNKGLSRQHKI-IAPANLEVPIRYVRKPIDY 145 (483)
T ss_pred HHHHHHHHhhhhhhhhhheecchhhhhhh-ccceeeccccccccce-eccccCCCCccceeccccc
Confidence 99999999999999999999 99999999 9999999999999998 8774 899999993
No 2
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=98.78 E-value=7.2e-11 Score=117.77 Aligned_cols=108 Identities=36% Similarity=0.533 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhH---
Q 038307 35 KDLKNLRTQLYSAAEYFELSYTNDDQKQIVVETLKDYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCI--- 111 (322)
Q Consensus 35 ~eLkdlrsqL~~aAeYCE~nY~~se~Kq~aLEeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l--- 111 (322)
.++..+..|+| +++|||+ |++.+.|++|.++.|+|+++|| +||+|+++.+..++++.|......++-+++|+
T Consensus 210 pv~pp~vP~~Y-~~~~~~~-~~~~s~~rm~~~n~~~~t~~~~---~~~~gt~~~sg~g~~g~q~a~~~~~~p~~~~~~~~ 284 (483)
T KOG2546|consen 210 PVLPPLVPSDY-APDYTEK-YLHQSPKRMASDNSKDYTVKAL---VDHLGTVESSGGGLFGHQNADGSTAPPRASCVQAI 284 (483)
T ss_pred ccCCCCCcccc-ccccccc-ccccchhhhhhhcccccccccc---cccccccccccccccCCcCCCCCCCCCcccccccc
Confidence 36778899999 9999999 9999999999999999999999 89999999999999999999999999987775
Q ss_pred ---------HHHHHHHHHhhhhhcchhhhhhhccCCCCccccccc
Q 038307 112 ---------EQRLRTCQEYIDHEGLSQQSLVINTPKYHKRYILPV 147 (322)
Q Consensus 112 ---------~QrV~~cek~a~rEgi~q~~l~k~~pr~HKrYI~p~ 147 (322)
.|.+.+|..|.+++|++++++...+|-+|++||.|.
T Consensus 285 q~~~~~~~~~~~~~t~~~~~s~~~lr~~q~~a~~p~q~~~~~~P~ 329 (483)
T KOG2546|consen 285 QPPVCVCSFHQQLLTCRGYISKPGLRQQQLLAVIPLQPKHPIPPN 329 (483)
T ss_pred CCceeeeecccCccccccccccccccchhhhcccccccCCCCCCc
Confidence 466677999999999999999999999999999994
No 3
>PF07815 Abi_HHR: Abl-interactor HHR; InterPro: IPR012849 The region is found towards the N terminus of a number of adaptor proteins that interact with Abl-family tyrosine kinases []. More specifically, it is termed the homeo-domain homologous region (HHR), as it is similar to the DNA-binding region of homeo-domain proteins []. Other homeo-domain proteins have been implicated in specifying positional information during embryonic development, and in the regulation of the expression of cell-type specific genes []. The Abl-interactor proteins are thought to coordinate the cytoplasmic and nuclear functions of the Abl-family kinases, and seem to be involved in cytoskeletal reorganisation, but their precise role remains unclear []. ; GO: 0005737 cytoplasm; PDB: 3P8C_F.
Probab=98.53 E-value=3.5e-08 Score=79.15 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=22.8
Q ss_pred HHHHHHH-HHHhhhhhcchhhhhhhccCCCCccccccc------CcccCCCC
Q 038307 111 IEQRLRT-CQEYIDHEGLSQQSLVINTPKYHKRYILPV------KYIGCSLD 155 (322)
Q Consensus 111 l~QrV~~-cek~a~rEgi~q~~l~k~~pr~HKrYI~p~------kY~R~~i~ 155 (322)
|+|.|+| |||+|+|| ||.++.+++.+|+||+ |.|+ +|+|+||+
T Consensus 1 i~q~v~iHkEKvARRe-IG~lT~~k~~~r~~ki-i~P~~~E~~~~Y~RkPId 50 (79)
T PF07815_consen 1 ISQTVDIHKEKVARRE-IGSLTTNKNTSRQHKI-IAPANPEPPQRYVRKPID 50 (79)
T ss_dssp HHHHHHHHHHHHHHHH-HHTT-EE-------SE-E--SS-------------
T ss_pred CchhhhhHHHHHHHHH-HhhcccccccCCccce-eCCCCCCCCCCceeccCc
Confidence 6899999 99999999 9999999999999995 5553 89999998
No 4
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=80.04 E-value=11 Score=26.25 Aligned_cols=49 Identities=12% Similarity=0.226 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHH
Q 038307 69 KDYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRT 117 (322)
Q Consensus 69 K~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~ 117 (322)
.+-.+..|...+.-|+.++..+..++..|..-|..+|..|......+..
T Consensus 4 ~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~ 52 (60)
T cd00193 4 RDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKR 52 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999999999888888877765
No 5
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=79.82 E-value=3.5 Score=42.90 Aligned_cols=57 Identities=19% Similarity=0.337 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHH-HHHhh
Q 038307 66 ETLKDYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRT-CQEYI 122 (322)
Q Consensus 66 EeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~-cek~a 122 (322)
.|+.=-|--.|+|++-||++|+.+-.|++-+=.++....-.|+|.|.||||- .-|++
T Consensus 24 ~ELecvtN~TLaniIRQLsSLSKhAEdIFGELf~da~~f~~R~NSLQ~RIDRL~vkVt 81 (518)
T KOG1830|consen 24 SELECVTNITLANIIRQLSSLSKHAEDIFGELFNDANNFNHRANSLQERIDRLAVKVT 81 (518)
T ss_pred cceeeecchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhh
Confidence 3444445567999999999999999999999999999999999999999997 33443
No 6
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=77.26 E-value=15 Score=26.59 Aligned_cols=46 Identities=13% Similarity=0.260 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHH
Q 038307 72 AVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRT 117 (322)
Q Consensus 72 avqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~ 117 (322)
.+..|...+..|+.++..+..+++.|..-|..++..|....-+|.-
T Consensus 5 ~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~ 50 (63)
T PF05739_consen 5 ELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKK 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHH
Confidence 3577889999999999999999999999999999999998888875
No 7
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=76.15 E-value=24 Score=24.80 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHH
Q 038307 64 VVETLKDYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRT 117 (322)
Q Consensus 64 aLEeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~ 117 (322)
.+.+..+-.+..|-.++.-+..++..+..+|+.|..-|..++..+......|..
T Consensus 5 ~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~ 58 (66)
T smart00397 5 QMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKK 58 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 345566777889999999999999999999999999999999998888888775
No 8
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=61.46 E-value=86 Score=25.62 Aligned_cols=51 Identities=20% Similarity=0.251 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhhhHHHHHHH---HHHHHhhhhhchhhhhhHHHHHHHHHHhhhh
Q 038307 74 KALVNTVDHLGSVTYKVNDI---LDEKVDEVLDTEHRVSCIEQRLRTCQEYIDH 124 (322)
Q Consensus 74 qALvSVayhIgtVA~kl~~L---Ld~Q~~evs~~ElrIs~l~QrV~~cek~a~r 124 (322)
..|-..|..|..-+..+... |+....+|+.+|.+|..|++.|..-..|+.+
T Consensus 38 ~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~ 91 (99)
T PF10046_consen 38 KKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKE 91 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444332 4556678889999999999999887777643
No 9
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=60.85 E-value=34 Score=33.03 Aligned_cols=72 Identities=26% Similarity=0.266 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHH----HHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhh
Q 038307 35 KDLKNLRTQLYSAAEYFELSYTNDDQKQIVVETLKDYAVKALV----NTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSC 110 (322)
Q Consensus 35 ~eLkdlrsqL~~aAeYCE~nY~~se~Kq~aLEeTK~YavqALv----SVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~ 110 (322)
+||+|-+ +.+.||| |+- .. --+..+|.+|.|++|+.+ -|||-||.....|.-=+ +..+.-..+.-
T Consensus 87 ~eLkdk~--~rs~Ad~-eNl--r~-R~~r~~edak~FaiQ~f~kdLleVaD~Le~a~~~v~ee~-----~~~d~~~~L~~ 155 (236)
T KOG3003|consen 87 QELKDKY--LRSLAEC-ENL--RD-RTIRDVEDAKKFAIQSFCKDLLEVADNLEKATECVKEES-----EKEDQKKDLKD 155 (236)
T ss_pred HHHHHHH--HHHHHHH-HHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh-----cccccchHHHH
Confidence 5555555 4555553 221 11 112368999999988755 48888887766654321 22333344555
Q ss_pred HHHHHHH
Q 038307 111 IEQRLRT 117 (322)
Q Consensus 111 l~QrV~~ 117 (322)
+-+.+.|
T Consensus 156 l~eGl~m 162 (236)
T KOG3003|consen 156 LFEGLSM 162 (236)
T ss_pred HHhHHHH
Confidence 5555555
No 10
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=60.02 E-value=63 Score=32.74 Aligned_cols=84 Identities=7% Similarity=0.150 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH---HHHHHHhhhhhch-
Q 038307 30 FSDSLKDLKNLRTQLYSAAEYFELSYTNDDQKQIVVETLKDYAVKALVNTVDHLGSVTYKVND---ILDEKVDEVLDTE- 105 (322)
Q Consensus 30 F~~aL~eLkdlrsqL~~aAeYCE~nY~~se~Kq~aLEeTK~YavqALvSVayhIgtVA~kl~~---LLd~Q~~evs~~E- 105 (322)
+.+.++++..+..+|...++-...-= ..-+....|+|+..++ .+|+....||..+...+++ +.++| ..++.+.
T Consensus 258 ~a~~~~~~~~ll~~l~~l~~~l~~ll-~~l~~~~lL~Nle~lt-~~LA~as~~l~~l~~~l~~p~~~~~L~-qtl~sl~~ 334 (370)
T PLN03094 258 AADLMEEARPLLLKIQAMAEDLQPLL-SEVRDSGLLKEVEKLT-RVAAEASEDLRRLNSSILTPENTELLR-QSIYTLTK 334 (370)
T ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHH-hhcchhhHHHHHHHHH-HHHHHHHHHHHHHHHhhcCHHHHHHHH-HHHHHHHH
Confidence 57788888888899988888777654 2222267899998876 7899999999999888777 33333 2344444
Q ss_pred --hhhhhHHHHHH
Q 038307 106 --HRVSCIEQRLR 116 (322)
Q Consensus 106 --lrIs~l~QrV~ 116 (322)
..|+.+..-|+
T Consensus 335 t~~ni~~vs~dv~ 347 (370)
T PLN03094 335 TLKHIESISSDIS 347 (370)
T ss_pred HHHHHHHHHHHHH
Confidence 44444444443
No 11
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=58.79 E-value=28 Score=34.19 Aligned_cols=51 Identities=18% Similarity=0.344 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHHHHHhhhhh
Q 038307 72 AVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRTCQEYIDHE 125 (322)
Q Consensus 72 avqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~cek~a~rE 125 (322)
++.-++...+||+.|+.++..=++.++ ..--.+++.|.+||..|+.-+++-
T Consensus 19 ti~qi~~aL~~L~~v~~diF~rI~~Rv---~~~~~~l~~i~~Ri~~~qaKi~~l 69 (297)
T PF11945_consen 19 TILQIADALEYLDKVSNDIFSRISARV---ERNRERLQAIQQRIEVAQAKIEKL 69 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777899999999999888765 455578999999999999988776
No 12
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=58.56 E-value=38 Score=24.99 Aligned_cols=48 Identities=8% Similarity=0.132 Sum_probs=40.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHHHHHhhh
Q 038307 76 LVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRTCQEYID 123 (322)
Q Consensus 76 LvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~cek~a~ 123 (322)
=-.+++.+-.+|..++.-|..|...+..+..+|..+.+.|......+.
T Consensus 13 s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~ 60 (66)
T PF12352_consen 13 SHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLK 60 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 346778888899999999999999999999999999999998655553
No 13
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=51.67 E-value=2.4e+02 Score=29.65 Aligned_cols=88 Identities=15% Similarity=0.261 Sum_probs=62.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Q 038307 22 VAMQQSLLFSDSLKDLKNLRTQLYSAAEYFELSYTNDDQKQIVVETLKDYAVKALVNTVDHLGSVTYKVNDILDEKVDEV 101 (322)
Q Consensus 22 ~~m~~~~~F~~aL~eLkdlrsqL~~aAeYCE~nY~~se~Kq~aLEeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~~ev 101 (322)
+-|++...|..-+.||++...-+....|=.|.- |....-+.+ |..++|--==|---.|---|++++++|-+||
T Consensus 254 ~~~s~~~~l~aileeL~eIk~~q~~Leesye~L------ke~~krdy~-fi~etLQEERyR~erLEEqLNdlteLqQnEi 326 (455)
T KOG3850|consen 254 PYHSQGAALDAILEELREIKETQALLEESYERL------KEQIKRDYK-FIAETLQEERYRYERLEEQLNDLTELQQNEI 326 (455)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 667888889998888888877777776655431 222222332 4557777777777788888999999998888
Q ss_pred hhchhhhhhHHHHHH
Q 038307 102 LDTEHRVSCIEQRLR 116 (322)
Q Consensus 102 s~~ElrIs~l~QrV~ 116 (322)
.++-...+|++-||+
T Consensus 327 ~nLKqElasmeerva 341 (455)
T KOG3850|consen 327 ANLKQELASMEERVA 341 (455)
T ss_pred HHHHHHHHHHHHHHH
Confidence 877766666666654
No 14
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=50.98 E-value=1.6e+02 Score=28.53 Aligned_cols=59 Identities=15% Similarity=0.303 Sum_probs=43.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHH
Q 038307 58 DDQKQIVVETLKDYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRT 117 (322)
Q Consensus 58 se~Kq~aLEeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~ 117 (322)
...++.|++..+..+ +.+=.+..+|..+-..+.+-++..+++|..+-.+|..|++.|..
T Consensus 126 ~~~r~~vl~~a~~l~-~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~lN~~I~~ 184 (322)
T TIGR02492 126 EALRQAVLESAQALA-NSFNQTSNELQDLRKGINAEIKSAVTEINSLLKQIASLNKEIQQ 184 (322)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888777776 66777777777777777777777777777777777777777763
No 15
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=47.53 E-value=69 Score=32.79 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=46.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHH
Q 038307 59 DQKQIVVETLKDYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRT 117 (322)
Q Consensus 59 e~Kq~aLEeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~ 117 (322)
..++.|+++.+..+ +.+-.+..+|..+-..+++-|+.++++|..+-.+|..|+++|..
T Consensus 122 ~~R~~vl~~a~~L~-~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~ 179 (483)
T PRK07521 122 TLAQAAVDAAQDLA-NSLNDASDAVQSARADADAEIADSVDTLNDLLAQFEDANNAVVS 179 (483)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888877 67778888888888888888888888888888888888888764
No 16
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=47.06 E-value=2e+02 Score=26.19 Aligned_cols=60 Identities=17% Similarity=0.178 Sum_probs=50.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHhhhhhchhhhhhHHHHHHHHHH
Q 038307 60 QKQIVVETLKDYAVKALVNTVDHLGSVTYKVN--DILDEKVDEVLDTEHRVSCIEQRLRTCQE 120 (322)
Q Consensus 60 ~Kq~aLEeTK~YavqALvSVayhIgtVA~kl~--~LLd~Q~~evs~~ElrIs~l~QrV~~cek 120 (322)
+...+|++-.+...+=+...-.++..+|.+|- +||... .|+.+|-.+|..|+|+|.--|.
T Consensus 85 ~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr-~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 85 VDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHR-REMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 55668888888888888888899999988885 688877 5999999999999999986443
No 17
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=46.11 E-value=31 Score=26.41 Aligned_cols=69 Identities=22% Similarity=0.257 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHH
Q 038307 42 TQLYSAAEYFELSYTNDDQKQIVVETLKDYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLR 116 (322)
Q Consensus 42 sqL~~aAeYCE~nY~~se~Kq~aLEeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~ 116 (322)
.-|.+||+|....+-.-..+-..++. ...++=|..|+++-+-.+-.....+.+ +..++.+|..|.++++
T Consensus 21 e~l~~~a~~i~~~i~~~~~~~~~~~~-~~~~vlaaLnla~e~~~~~~~~~~~~~-----~~~l~~~i~~L~~~le 89 (89)
T PF05164_consen 21 EYLRKAAELINEKINEIKKKYPKLSP-ERLAVLAALNLADELLKLKRELDELEE-----LERLEERIEELNERLE 89 (89)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCTSSH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHhhC
Confidence 34566777776555221111112222 234555777887777666655555444 5577777777777764
No 18
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=45.74 E-value=2.3e+02 Score=25.59 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhhCCCCc-----hhhHHHHHHHHHH--HHHHHHHH
Q 038307 40 LRTQLYSAAEYFELSYTNDD-----QKQIVVETLKDYA--VKALVNTV 80 (322)
Q Consensus 40 lrsqL~~aAeYCE~nY~~se-----~Kq~aLEeTK~Ya--vqALvSVa 80 (322)
+-.-|..+++.++..+...+ .=...+|-+|+|. +.|+=+|.
T Consensus 68 L~~~L~~~~~~~~~~~~~~~~l~~~~~~~f~e~Lkey~~y~~svk~~l 115 (200)
T cd07624 68 LAPLLEGVSSAVERCTAALEVLLSDHEFVFLPPLREYLLYSDAVKDVL 115 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45566677777777763311 2234778888885 34444443
No 19
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=44.41 E-value=1.1e+02 Score=29.29 Aligned_cols=54 Identities=13% Similarity=0.066 Sum_probs=39.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHHHHHhhhhhcchhhhhhh
Q 038307 58 DDQKQIVVETLKDYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRTCQEYIDHEGLSQQSLVI 134 (322)
Q Consensus 58 se~Kq~aLEeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~cek~a~rEgi~q~~l~k 134 (322)
-|+||.=+|++-+|- + .+-+++..+|.+|..+.+.|+...+-+.+| +.....+|
T Consensus 155 RdqkQ~d~E~l~E~l----~------------------~rre~~~kLe~~ie~~~~~ve~f~~~~~~E-~~~Fe~~K 208 (240)
T cd07667 155 RDQVQAEYEAKLEAV----A------------------LRKEERPKVPTDVEKCQDRVECFNADLKAD-MERWQNNK 208 (240)
T ss_pred HHHHHHHHHHHHHHH----H------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 578888888877773 1 266788888899999988888766666666 55555444
No 20
>PRK10972 Z-ring-associated protein; Provisional
Probab=42.37 E-value=47 Score=28.39 Aligned_cols=71 Identities=18% Similarity=0.271 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHH
Q 038307 39 NLRTQLYSAAEYFELSYTNDDQKQIVVETLKDYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRT 117 (322)
Q Consensus 39 dlrsqL~~aAeYCE~nY~~se~Kq~aLEeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~ 117 (322)
+-+..|..||+|.....-.-.++-.|+.. -.-++=|-. ++++.|+..=........+++.+|..|.++++-
T Consensus 22 ~e~~~L~~AA~~Ld~km~~ir~~~kv~~~-EriavmaAL-------Nl~~ELl~~k~~~~~~~~~~~~rI~~L~~~ld~ 92 (109)
T PRK10972 22 EQRDALNQAAEDLNQRLQDLKERTRVTNT-EQLVFIAAL-------NICYELAQEKAKTRDYAANMEQRIRMLQQTIEQ 92 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHH-------HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 34677899999987665332222222221 112222222 345555555444455667889999999999985
No 21
>PF01893 UPF0058: Uncharacterised protein family UPF0058; InterPro: IPR002753 These archaebacterial proteins have no known function. Members of the family are about 90-105 amino acid residues long.; PDB: 2GF4_B.
Probab=42.25 E-value=46 Score=27.67 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCchhhHHHHHHH
Q 038307 35 KDLKNLRTQLYSAAEYFELSYTNDDQKQIVVETLK 69 (322)
Q Consensus 35 ~eLkdlrsqL~~aAeYCE~nY~~se~Kq~aLEeTK 69 (322)
+||..||..|..|.+|||. ....+..-..+|++.
T Consensus 4 ~ELi~LH~lL~~v~~~~e~-~~~~~~~~~~Y~~L~ 37 (89)
T PF01893_consen 4 EELIHLHQLLVEVKKYFEE-ENNDEEDFEEYEELG 37 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TT--TTTTHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHh-ccCCccchhHHHHcC
Confidence 6899999999999999998 555555555677664
No 22
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=41.02 E-value=2e+02 Score=29.90 Aligned_cols=58 Identities=12% Similarity=0.241 Sum_probs=46.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHH
Q 038307 59 DQKQIVVETLKDYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRT 117 (322)
Q Consensus 59 e~Kq~aLEeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~ 117 (322)
-.++.||+..+..+ +.+=++..+|..+-..++.-|+..+++|..+-.+|..|+++|..
T Consensus 128 ~~r~~vl~~a~~l~-~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~ 185 (547)
T PRK08147 128 AARQALIGKAEGLV-NQFKTTDQYLRDQDKGVNTAIGSSVDQINNYAKQIASLNDQITR 185 (547)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777888888776 67777888888888888888888888888888888888888864
No 23
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=40.48 E-value=95 Score=31.58 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=47.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHH
Q 038307 58 DDQKQIVVETLKDYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRT 117 (322)
Q Consensus 58 se~Kq~aLEeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~ 117 (322)
...++.||+..+..+ +.+=.+..+|..+-..+++-++.++++|..+=.+|..|++.|..
T Consensus 126 ~~~r~~vl~~a~~la-~~~n~~~~~l~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~ 184 (456)
T PRK07191 126 PPMRQQVIESANAMA-LRFNNVNNFIVQQKKSIGQQRDATVKQINSLTRSIADYNQKILK 184 (456)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777888888776 67777888888888888888888888888888888888888864
No 24
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=40.23 E-value=2.8e+02 Score=28.76 Aligned_cols=59 Identities=12% Similarity=0.209 Sum_probs=48.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHH
Q 038307 58 DDQKQIVVETLKDYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRT 117 (322)
Q Consensus 58 se~Kq~aLEeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~ 117 (322)
.-.++.||+..+..+ +.+=.+..+|..+-..+.+-+...+++|..+=.+|..|++.|..
T Consensus 138 ~~~r~~vl~~a~~La-~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~ 196 (507)
T PRK07739 138 LGARSVVRQRAQALA-ETFNYLSQSLTDIQNDLKSEIDVTVKEINSLASQISDLNKQIAK 196 (507)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777888888877 66788888888888888888888888888888888888888764
No 25
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=40.19 E-value=1.4e+02 Score=30.72 Aligned_cols=86 Identities=16% Similarity=0.286 Sum_probs=57.3
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhh
Q 038307 24 MQQSLLFSDSLKDLKNLRTQLYSAAEYFELSYTNDDQKQIVVETLKDYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLD 103 (322)
Q Consensus 24 m~~~~~F~~aL~eLkdlrsqL~~aAeYCE~nY~~se~Kq~aLEeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~ 103 (322)
-+....|...+.||.+.+.......+=+|. + |..+.-+. .|..++|-.--|..--|-.-|+|++++.-+||..
T Consensus 208 ~~~~~~l~~~~~el~eik~~~~~L~~~~e~--L----k~~~~~e~-~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~ 280 (395)
T PF10267_consen 208 SQQNLGLQKILEELREIKESQSRLEESIEK--L----KEQYQREY-QFILEALQEERYRYERLEEQLNDLTELHQNEIYN 280 (395)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHH--H----HHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554444444332 1 11122232 3777999999999999999999999999999988
Q ss_pred chhhhhhHHHHHH
Q 038307 104 TEHRVSCIEQRLR 116 (322)
Q Consensus 104 ~ElrIs~l~QrV~ 116 (322)
+-..++|++-+|+
T Consensus 281 LKqeLa~~EEK~~ 293 (395)
T PF10267_consen 281 LKQELASMEEKMA 293 (395)
T ss_pred HHHHHHhHHHHHH
Confidence 8888888887654
No 26
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=40.15 E-value=2.6e+02 Score=28.07 Aligned_cols=84 Identities=23% Similarity=0.322 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHH----------HHHHHhhCCCCchhhHHHHHHHHHHH-----HHHHHHHHHhhhhHHHHHHHHHH
Q 038307 32 DSLKDLKNLRTQLYSA----------AEYFELSYTNDDQKQIVVETLKDYAV-----KALVNTVDHLGSVTYKVNDILDE 96 (322)
Q Consensus 32 ~aL~eLkdlrsqL~~a----------AeYCE~nY~~se~Kq~aLEeTK~Yav-----qALvSVayhIgtVA~kl~~LLd~ 96 (322)
.||+.+.++-.||.+. .|-||.+. ..+|++|=++..+|+. +.|+...+.|-.---+|.+-|..
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaL--qKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~ 92 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQRQFQLESLEAAL--QKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQV 92 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhh
Confidence 4555555555555544 45555544 3578888889999985 89999999999999999999999
Q ss_pred HHhhhhhchhhhhhHHHHHHH
Q 038307 97 KVDEVLDTEHRVSCIEQRLRT 117 (322)
Q Consensus 97 Q~~evs~~ElrIs~l~QrV~~ 117 (322)
+..+|.-+|-+++.....|..
T Consensus 93 Ke~qv~~lEgQl~s~Kkqie~ 113 (307)
T PF10481_consen 93 KESQVNFLEGQLNSCKKQIEK 113 (307)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 988888888776654444443
No 27
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=39.33 E-value=2.6e+02 Score=29.92 Aligned_cols=59 Identities=14% Similarity=0.264 Sum_probs=46.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHH
Q 038307 58 DDQKQIVVETLKDYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRT 117 (322)
Q Consensus 58 se~Kq~aLEeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~ 117 (322)
...++.||+..+..+ +.+=.+..+|..+-..+++-|+.++++|..+-.+|..|+++|..
T Consensus 138 ~a~R~~vl~~A~~La-~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qIa~LN~qI~~ 196 (627)
T PRK06665 138 LAERQVVLERAQSLG-ERIHDRYRSLERIRDMANDEIEITVEEINNILRNIADLNEQIVK 196 (627)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777888888776 67777888888888888888888888888888888888887764
No 28
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=38.49 E-value=3.5e+02 Score=25.59 Aligned_cols=91 Identities=16% Similarity=0.216 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHH--HHHHH---------HHHHhhhhHHHHHHHHHHH
Q 038307 29 LFSDSLKDLKNLRTQLYSAAEYFELSYTNDDQKQIVVETLKDYAV--KALVN---------TVDHLGSVTYKVNDILDEK 97 (322)
Q Consensus 29 ~F~~aL~eLkdlrsqL~~aAeYCE~nY~~se~Kq~aLEeTK~Yav--qALvS---------VayhIgtVA~kl~~LLd~Q 97 (322)
-|.+-.+.+.+|..||.++..=+|.- ..+.+.+-..|-+|+. ..|++ .-.+++.|..++-.+++.|
T Consensus 23 ~F~~~k~yi~~Le~~Lk~l~k~~~~l---v~~rkela~~~~efa~s~~~L~~~E~~~~ls~~l~~laev~~ki~~~~~~q 99 (234)
T cd07664 23 WFEEKQQQFENLDQQLRKLHASVESL---VCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQDQ 99 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666665555432 2344456777777774 33333 3348888888888888888
Q ss_pred Hhhhh------------hchhhhhhHHHHHHHHHHhh
Q 038307 98 VDEVL------------DTEHRVSCIEQRLRTCQEYI 122 (322)
Q Consensus 98 ~~evs------------~~ElrIs~l~QrV~~cek~a 122 (322)
+.+.. -+.+=-.++.||+.+.+.|-
T Consensus 100 a~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~ 136 (234)
T cd07664 100 AFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQ 136 (234)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76533 11111256778887755554
No 29
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=38.10 E-value=1.1e+02 Score=32.56 Aligned_cols=58 Identities=22% Similarity=0.372 Sum_probs=43.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHH
Q 038307 59 DQKQIVVETLKDYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRT 117 (322)
Q Consensus 59 e~Kq~aLEeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~ 117 (322)
-.++.||+..+..+ +.+=++..+|..+-..+++-|..++++|..+-.+|..|+++|..
T Consensus 132 ~~R~~vl~~a~~L~-~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~qI~~ 189 (613)
T PRK08471 132 AQKQALAQKTETLT-NNIKDTRERLDTLQKKVNEELKVTVDEINSLGKQIAEINKQIKE 189 (613)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667777777776 66777777777777777777888888888887777777777764
No 30
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=36.41 E-value=3.3e+02 Score=24.84 Aligned_cols=64 Identities=20% Similarity=0.343 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Q 038307 30 FSDSLKDLKNLRTQLYSAAEYFELSYTNDDQKQIVVETLKDYA--VKALVNTVDHLGSVTYKVNDILDEKVDEV 101 (322)
Q Consensus 30 F~~aL~eLkdlrsqL~~aAeYCE~nY~~se~Kq~aLEeTK~Ya--vqALvSVayhIgtVA~kl~~LLd~Q~~ev 101 (322)
+..++++|.+-+..|. +||...| |...+||=+.|. +.-+..|++|+-++-.+-..+|+...+..
T Consensus 143 ~~~~~~~v~~~~~ele---~~~~~~~-----r~al~EERrRyc~lv~~~~~~~~~~~~~~~~~~~~L~~~~~~w 208 (219)
T PF08397_consen 143 LKEALQDVTERQSELE---EFEKQSL-----REALLEERRRYCFLVEKHCSVVKSELAFHNEAVEHLQEKLDDW 208 (219)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3445677777777766 3555554 788889988887 56666677766666666555555444433
No 31
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=35.82 E-value=95 Score=28.35 Aligned_cols=78 Identities=19% Similarity=0.203 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH--HHHhhhhhchh
Q 038307 29 LFSDSLKDLKNLRTQLYSAAEYFELSYTNDDQKQIVVETLKDYAVKALVNTVDHLGSVTYKVNDILD--EKVDEVLDTEH 106 (322)
Q Consensus 29 ~F~~aL~eLkdlrsqL~~aAeYCE~nY~~se~Kq~aLEeTK~YavqALvSVayhIgtVA~kl~~LLd--~Q~~evs~~El 106 (322)
-..-||.|..=|-.||.+...-||+.+-. -|.+|+-|+. -.|+|=+=-+-+..-+- .|.+-|+.-|+
T Consensus 32 KLqfAlgeieiL~kQl~rek~afe~a~~~--vk~k~~~Es~---------k~dqL~~KC~~~~~ei~c~kqed~LngKe~ 100 (153)
T PF15175_consen 32 KLQFALGEIEILSKQLEREKLAFEKALGS--VKSKVLQESS---------KKDQLITKCNEIESEIICHKQEDILNGKEN 100 (153)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH---------HHHHHHHHHHHHHHHHHhcchhhhhccccc
Confidence 34568999999999999999999998743 3333444432 24555554444444444 67778888899
Q ss_pred hhhhHHHHHHH
Q 038307 107 RVSCIEQRLRT 117 (322)
Q Consensus 107 rIs~l~QrV~~ 117 (322)
.|++|.|+|..
T Consensus 101 ~I~eLk~~l~s 111 (153)
T PF15175_consen 101 EIKELKQRLAS 111 (153)
T ss_pred chHHHHhhhHH
Confidence 99999999996
No 32
>COG1745 Predicted metal-binding protein [General function prediction only]
Probab=35.20 E-value=73 Score=26.98 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCchhhHHHHHH
Q 038307 35 KDLKNLRTQLYSAAEYFELSYTNDDQKQIVVETL 68 (322)
Q Consensus 35 ~eLkdlrsqL~~aAeYCE~nY~~se~Kq~aLEeT 68 (322)
.||..||..|+.|-+|+|.-|--.+.=-+.+|++
T Consensus 4 eELi~LH~~l~~vkky~e~~~~~~n~~fk~YdeL 37 (94)
T COG1745 4 EELIQLHQLLVYVKKYFENEYGIDNEEFKEYDEL 37 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHc
Confidence 5899999999999999999876665544455543
No 33
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=33.18 E-value=3.7e+02 Score=27.38 Aligned_cols=58 Identities=7% Similarity=0.170 Sum_probs=41.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHH
Q 038307 59 DQKQIVVETLKDYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRT 117 (322)
Q Consensus 59 e~Kq~aLEeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~ 117 (322)
..++.|++..+.++ +.+=++..+|..+-..+++-|+.++++|..+=.+|..|+++|..
T Consensus 132 ~~r~~vl~~a~~l~-~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~ 189 (431)
T PRK06799 132 NYYDTLISETGKFT-SQLNRLAKGLDELEAQTTEDIEAHVNEFNRLAKSLAEANKKIGQ 189 (431)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777765 66666667777777777777777788888887888777777753
No 34
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=32.44 E-value=1.5e+02 Score=24.23 Aligned_cols=49 Identities=22% Similarity=0.264 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHhhhhhchhhhhhHHHHHH
Q 038307 68 LKDYAVKALVNTVDHLGS-VTYKVNDILDEKVDEVLDTEHRVSCIEQRLR 116 (322)
Q Consensus 68 TK~YavqALvSVayhIgt-VA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~ 116 (322)
..-|||+||.|++-+.+. +-.+++++++.-..-+.+.+.+|..-.+-++
T Consensus 43 VRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld 92 (97)
T PF12755_consen 43 VRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAELLD 92 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHH
Confidence 467999999999988654 3346677777777777777777776665554
No 35
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=32.17 E-value=3e+02 Score=30.03 Aligned_cols=59 Identities=12% Similarity=0.246 Sum_probs=45.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHH
Q 038307 58 DDQKQIVVETLKDYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRT 117 (322)
Q Consensus 58 se~Kq~aLEeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~ 117 (322)
...++.||+..+..+ +.+=++..+|..+-..+++-|+.++++|..+-.+|..|++.|..
T Consensus 126 ~aaRq~vl~~A~~La-~~fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~qIA~LN~qI~~ 184 (676)
T PRK05683 126 TAARQLLLTQAQGLS-KRFNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIASYNKQIAQ 184 (676)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777888887776 66777777788888888888888888888888888888887754
No 36
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=31.25 E-value=1.6e+02 Score=25.73 Aligned_cols=84 Identities=21% Similarity=0.246 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHH
Q 038307 34 LKDLKNLRTQLYSAAEYFELSYTNDDQKQIVVETLKDYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQ 113 (322)
Q Consensus 34 L~eLkdlrsqL~~aAeYCE~nY~~se~Kq~aLEeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~Q 113 (322)
+..+..++.+|..++-=-..-=.+=..=.+||+|+-.-.-.| .|..-+|++=.++. +-.-+.+++-++..|+=
T Consensus 12 l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~--~vYk~VG~llvk~~-----k~~~~~eL~er~E~Le~ 84 (119)
T COG1382 12 LAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDA--PVYKKVGNLLVKVS-----KEEAVDELEERKETLEL 84 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--HHHHHhhhHHhhhh-----HHHHHHHHHHHHHHHHH
Confidence 455666666666665311110011111234666665555444 66777888776662 34557777788888888
Q ss_pred HHHHHHHhhhh
Q 038307 114 RLRTCQEYIDH 124 (322)
Q Consensus 114 rV~~cek~a~r 124 (322)
||.+|++-..+
T Consensus 85 ri~tLekQe~~ 95 (119)
T COG1382 85 RIKTLEKQEEK 95 (119)
T ss_pred HHHHHHHHHHH
Confidence 88886665543
No 37
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=30.37 E-value=2.1e+02 Score=20.54 Aligned_cols=66 Identities=11% Similarity=0.150 Sum_probs=44.7
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 038307 25 QQSLLFSDSLKDLKNLRTQLYSAAEYFELSYTNDDQKQIVVETLKDYAVKALVNTVDHLGSVTYKVND 92 (322)
Q Consensus 25 ~~~~~F~~aL~eLkdlrsqL~~aAeYCE~nY~~se~Kq~aLEeTK~YavqALvSVayhIgtVA~kl~~ 92 (322)
.....|.....+|++...+|....++|...+- ++......+... --..++..++.-|+.++..|..
T Consensus 11 ~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~-G~a~~af~~~~~-~~~~~~~~~~~~L~~~~~~l~~ 76 (86)
T PF06013_consen 11 AAAQQLQAQADELQSQLQQLESSIDSLQASWQ-GEAADAFQDKFE-EWNQAFRQLNEALEELSQALRQ 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBT-SSTSHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-chHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888999999999999999999977776 444443333333 3335666666666666555544
No 38
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=29.75 E-value=3.7e+02 Score=29.11 Aligned_cols=60 Identities=12% Similarity=0.226 Sum_probs=44.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHHH
Q 038307 58 DDQKQIVVETLKDYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRTC 118 (322)
Q Consensus 58 se~Kq~aLEeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~c 118 (322)
...++.||+..+..+ +.+=.+..+|..+-..++.-|+..+++|..+-.+|..|+++|...
T Consensus 127 ~~~Rq~vl~~a~~La-~~fn~~~~~L~~~~~~~n~~I~~~V~~IN~l~~qIA~LN~~I~~~ 186 (651)
T PRK06945 127 PSARQTMLSNAQTLA-SQFNAAGQQLDQLRQSVNTQLTSSVTQINSYTKQIAQLNDQIAKA 186 (651)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677888887776 667777777777777777778888888888888888888777643
No 39
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=29.01 E-value=5.1e+02 Score=24.62 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=30.5
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 038307 19 YDEVAMQQSLLFSDSLKDLKNLRTQLYSAAEYFEL 53 (322)
Q Consensus 19 ~~E~~m~~~~~F~~aL~eLkdlrsqL~~aAeYCE~ 53 (322)
+....++.+..|..|+..+.+++.+|..+...|.+
T Consensus 51 L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~ 85 (291)
T PF10475_consen 51 LSREISEKSDSFFQAMSSVQELQDELEEALVICKN 85 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788889999999999999999999999974
No 40
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=28.94 E-value=2.3e+02 Score=22.18 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHHH
Q 038307 39 NLRTQLYSAAEYFELSYTNDDQKQIVVETLKDYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRTC 118 (322)
Q Consensus 39 dlrsqL~~aAeYCE~nY~~se~Kq~aLEeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~c 118 (322)
+...+|++.-|||..+-.... .. .+++-++.+-..+. .+...|.-+..|..-|.+.
T Consensus 16 ~A~d~L~~~fD~~~~~~~~~~------~~-----------------~~~~all~lA~~~~-~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 16 EALDALHRYFDYAKQSNNSSS------NS-----------------GLAYALLNLAELHR-RFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHHHHHHhhcccchh------hH-----------------HHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHH
Confidence 334456777788876654433 11 12222333334343 4566777778888888888
Q ss_pred HHhhhhhcchh
Q 038307 119 QEYIDHEGLSQ 129 (322)
Q Consensus 119 ek~a~rEgi~q 129 (322)
++.-|+.++..
T Consensus 72 re~~D~~~l~~ 82 (94)
T PF12862_consen 72 RENGDRRCLAY 82 (94)
T ss_pred HHHCCHHHHHH
Confidence 87777776654
No 41
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=28.18 E-value=1.8e+02 Score=26.63 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 038307 29 LFSDSLKDLKNLRTQLYSAAEYFE 52 (322)
Q Consensus 29 ~F~~aL~eLkdlrsqL~~aAeYCE 52 (322)
.+...|++++++|.+|..+.+|..
T Consensus 65 ~~v~~L~~v~~lR~~L~~l~~yl~ 88 (202)
T PF13901_consen 65 SHVKELRKVRELREQLSLLKDYLR 88 (202)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999973
No 42
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=26.93 E-value=6.2e+02 Score=30.54 Aligned_cols=51 Identities=16% Similarity=0.109 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 038307 32 DSLKDLKNLRTQLYSAAEYFELSYTNDDQKQIVVETLKDYAVKALVNTVDH 82 (322)
Q Consensus 32 ~aL~eLkdlrsqL~~aAeYCE~nY~~se~Kq~aLEeTK~YavqALvSVayh 82 (322)
+|-+.|+.+..++..|-+--|+.-..+.+-+.-.|.+++=|.+=|+.+-.|
T Consensus 1658 ~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~k 1708 (1758)
T KOG0994|consen 1658 SAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEK 1708 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555554444444433444444444444433333
No 43
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=26.85 E-value=2e+02 Score=30.99 Aligned_cols=57 Identities=16% Similarity=0.182 Sum_probs=42.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHH
Q 038307 59 DQKQIVVETLKDYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLR 116 (322)
Q Consensus 59 e~Kq~aLEeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~ 116 (322)
..++.||++.+..+ +.+-.+..+|..+-..++.-|+..+++|..+-.+|..|++.|.
T Consensus 130 aaRq~vl~~A~~La-~~fn~~~~~L~~~~~~vn~qi~~~V~~IN~l~~qIA~LN~qI~ 186 (626)
T PRK08871 130 GARKVVLEKAKLIS-QTLNDFHETVRQQKDVTNKKLDLGVERINQIALEIRDIHRLMM 186 (626)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888777765 5666677777777777777777777777777777777777774
No 44
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=26.37 E-value=1.8e+02 Score=26.77 Aligned_cols=39 Identities=10% Similarity=0.211 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHhhhhhchh-------hhhhHHHHHHHHHHhhhh
Q 038307 86 VTYKVNDILDEKVDEVLDTEH-------RVSCIEQRLRTCQEYIDH 124 (322)
Q Consensus 86 VA~kl~~LLd~Q~~evs~~El-------rIs~l~QrV~~cek~a~r 124 (322)
+..+...+|+.|-.+-.-+++ .|..|.+||...|+|.+.
T Consensus 19 i~q~~~~ll~~~e~~~~lL~l~v~gik~~V~~L~aRV~alE~~l~d 64 (204)
T PF00517_consen 19 IVQQQSNLLRAQEAQQHLLQLTVWGIKQGVKQLQARVLALERYLKD 64 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHHHHhhh
Confidence 344444444444333344444 444466688888888743
No 45
>PRK10869 recombination and repair protein; Provisional
Probab=26.18 E-value=7.1e+02 Score=26.23 Aligned_cols=54 Identities=17% Similarity=0.202 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHHHHHhhhhhcchhhh
Q 038307 74 KALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRTCQEYIDHEGLSQQS 131 (322)
Q Consensus 74 qALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~cek~a~rEgi~q~~ 131 (322)
..|-++.|.|.-++..|.+.++ .+.-=+.++..|++|+.......+|=|.+--.
T Consensus 268 ~~l~~~~~~l~~~~~~l~~~~~----~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~ 321 (553)
T PRK10869 268 DMLEEALIQIQEASDELRHYLD----RLDLDPNRLAELEQRLSKQISLARKHHVSPEE 321 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----hcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 3444455555555555544444 22222345677888888877777777654433
No 46
>TIGR00153 conserved hypothetical protein TIGR00153. An apparent homolog with a suggested function is Pit accessory protein from Sinorhizobium meliloti, which may be involved in phosphate (Pi) transport.
Probab=25.66 E-value=5e+02 Score=23.41 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhC-----CCCchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 038307 28 LLFSDSLKDLKNLRTQLYSAAEYFELSY-----TNDDQKQIVVETLKDYAVKALVNTVDHLGSVTYKV 90 (322)
Q Consensus 28 ~~F~~aL~eLkdlrsqL~~aAeYCE~nY-----~~se~Kq~aLEeTK~YavqALvSVayhIgtVA~kl 90 (322)
..-|.-+.++-.+-.+|..|+||++..- .+-+.-..+-++++.++ +-++..+.+++.+-..|
T Consensus 74 fitP~dReDi~~L~~~lD~I~D~i~~~a~~l~l~~~~~~~~l~~~~~~l~-~~i~~~~~~l~~av~~l 140 (216)
T TIGR00153 74 AFLPNDRRDLLELAELLDEILDSLEHAAMLYELRKFEFPEELRDEFLLVL-KITVDMIQHLHRVVEVI 140 (216)
T ss_pred ccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3445667899999999999999999653 22222222334555554 45555555555554443
No 47
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.38 E-value=1.8e+02 Score=28.56 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=40.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHHHHHhh
Q 038307 78 NTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRTCQEYI 122 (322)
Q Consensus 78 SVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~cek~a 122 (322)
-+++....++...+-+|+.|..+|..+|..+..|.+.+...|+.+
T Consensus 86 ~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l 130 (273)
T KOG3065|consen 86 KLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNL 130 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHH
Confidence 468889999999999999999999999999999999998866655
No 48
>PF04088 Peroxin-13_N: Peroxin 13, N-terminal region; InterPro: IPR007223 Peroxin-13 is a component of the peroxisomal translocation machinery with Peroxin-14 and Peroxin-17. Both termini of Peroxin-13 are oriented to the cytosol. It is required for peroxisomal association of peroxin-14 []. The proteins also contain an SH3 domain (IPR001452 from INTERPRO).; GO: 0016560 protein import into peroxisome matrix, docking, 0005777 peroxisome, 0016021 integral to membrane
Probab=22.10 E-value=1e+02 Score=27.78 Aligned_cols=56 Identities=14% Similarity=0.284 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 038307 32 DSLKDLKNLRTQLYSAAEYFELSYTNDDQKQIVVETLKDYAVKALVNTVDHLGSVTYKVNDILDEKV 98 (322)
Q Consensus 32 ~aL~eLkdlrsqL~~aAeYCE~nY~~se~Kq~aLEeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~ 98 (322)
.+.|-++..=.-.-.+|.=.|.+|.-... .-.|+++||+|+|.|=..|-++|..=+
T Consensus 26 ~tFq~IESIV~Afg~fAqMLESTy~Aths-----------SF~a~v~VAeqF~~Lk~~lgs~l~ifa 81 (158)
T PF04088_consen 26 ATFQSIESIVGAFGGFAQMLESTYMATHS-----------SFFAMVSVAEQFGRLKNTLGSILGIFA 81 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666777777777742211 237899999999999888888887543
No 49
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=21.33 E-value=5.6e+02 Score=27.42 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhhhhHHHHH
Q 038307 73 VKALVNTVDHLGSVTYKVN 91 (322)
Q Consensus 73 vqALvSVayhIgtVA~kl~ 91 (322)
-+.+..+|++||.+..++.
T Consensus 162 ~~~I~~~V~~vNsLl~qIa 180 (552)
T COG1256 162 NAEIAATVDEVNSLLKQIA 180 (552)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 50
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=20.28 E-value=3.2e+02 Score=28.47 Aligned_cols=54 Identities=13% Similarity=0.199 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHH
Q 038307 63 IVVETLKDYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRT 117 (322)
Q Consensus 63 ~aLEeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~ 117 (322)
..+..+|..--..+..+...+..+...|..+-... .++.+++.++..+.+.+..
T Consensus 311 ~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~-~~le~L~~el~~l~~~l~~ 364 (563)
T TIGR00634 311 AQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSD-ESLEALEEEVDKLEEELDK 364 (563)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHH
Confidence 34444444444466777777777777777655544 3677777777777776665
Done!