Query 038307
Match_columns 322
No_of_seqs 88 out of 104
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 16:33:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038307.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038307hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p8c_F ABL interactor 2; actin 100.0 4.4E-44 1.5E-48 312.5 14.1 135 19-155 2-143 (159)
2 3p8c_D Wiskott-aldrich syndrom 88.4 0.87 3E-05 42.9 6.7 71 64-134 22-97 (279)
3 3b5n_C Protein transport prote 67.4 19 0.00063 27.3 6.8 51 73-123 14-64 (70)
4 1l4a_C S-SNAP25 fusion protein 56.6 17 0.00059 28.4 5.0 49 73-121 29-77 (83)
5 2d4y_A HAP1, flagellar HOOK-as 52.0 71 0.0024 30.7 9.5 76 37-117 46-121 (463)
6 1nhl_A Synaptosomal-associated 49.0 44 0.0015 23.7 5.7 49 73-121 2-50 (54)
7 2gf4_A Protein VNG1086C; HSR14 46.8 1.2E+02 0.004 24.8 8.7 45 35-79 4-61 (100)
8 3t9o_A DGC, diguanylate cyclas 44.4 49 0.0017 26.9 6.2 51 32-83 71-121 (135)
9 1hy5_A Yersinia pestis virulen 42.7 13 0.00043 32.0 2.4 67 36-117 53-125 (136)
10 3ghg_A Fibrinogen alpha chain; 41.5 1.8E+02 0.0061 30.0 10.8 95 19-120 51-163 (562)
11 2olt_A Hypothetical protein; s 39.3 1.8E+02 0.0061 24.7 10.9 56 34-90 83-143 (227)
12 1m1j_C Fibrinogen gamma chain; 36.4 1.8E+02 0.0062 28.5 9.7 32 27-58 40-71 (409)
13 4abx_A DNA repair protein RECN 34.5 1.8E+02 0.0063 24.2 8.4 52 74-129 94-145 (175)
14 1n7s_C SNAP-25A; neuronal snar 31.6 1.4E+02 0.0048 22.6 6.5 48 74-121 26-73 (79)
15 2yo3_A General control protein 31.2 98 0.0034 29.1 6.6 30 64-93 206-235 (268)
16 1t3u_A Conserved hypothetical 30.8 36 0.0012 26.4 3.1 69 41-117 25-93 (104)
17 1n7s_D SNAP-25A; neuronal snar 28.6 1.6E+02 0.0055 21.0 7.4 53 65-117 4-56 (66)
18 1sfc_D Protein (SNAP-25B), pro 25.1 2.3E+02 0.0077 21.6 8.2 54 64-117 22-75 (87)
19 1l4a_D S-SNAP25 fusion protein 25.1 1.9E+02 0.0065 22.2 6.3 53 65-117 24-76 (87)
20 1gl2_D Syntaxin 8, vesicle tra 24.9 1.9E+02 0.0065 20.6 6.5 46 72-117 10-55 (65)
21 2w6b_A RHO guanine nucleotide 23.3 1.1E+02 0.0037 22.8 4.3 37 74-125 6-42 (56)
22 3hd7_B Syntaxin-1A; membrane p 23.1 2.8E+02 0.0095 21.9 7.7 55 63-117 11-67 (109)
23 2nps_B Syntaxin 13, vesicle-as 22.7 2.1E+02 0.0071 20.8 5.9 48 70-117 5-52 (71)
24 4g2k_A General control protein 22.4 2.6E+02 0.0088 23.7 7.0 35 83-117 44-78 (125)
25 2hfi_A Hypothetical protein YP 22.0 2.1E+02 0.0073 23.9 6.4 59 47-105 58-125 (131)
26 1wgn_A UBAP1, ubiquitin associ 20.7 60 0.0021 24.6 2.5 33 21-53 22-56 (63)
27 1fs1_B SKP1, cyclin A/CDK2-ass 20.3 1.3E+02 0.0043 24.4 4.7 16 41-56 46-61 (141)
No 1
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=100.00 E-value=4.4e-44 Score=312.48 Aligned_cols=135 Identities=23% Similarity=0.307 Sum_probs=130.9
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 038307 19 YDEVAMQQSLLFSDSLKDLKNLRTQLYSAAEYFELSYTNDDQKQIVVETLKDYAVKALVNTVDHLGSVTYKVNDILDEKV 98 (322)
Q Consensus 19 ~~E~~m~~~~~F~~aL~eLkdlrsqL~~aAeYCE~nY~~se~Kq~aLEeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~ 98 (322)
++|++|++..++++++++|+++|+||++||||||+||++++||+.||||||+||+|||||||||||+||++|++|||+|+
T Consensus 2 ~~~l~~l~~~eiP~~r~~L~~s~~nL~~vAdYCE~nY~qs~dK~~aleeTK~Ya~qsLaSVAyqIn~lA~~ll~lLd~Q~ 81 (159)
T 3p8c_F 2 MAELQMLLEEEIPGGRRALFDSYTNLERVADYCENNYIQSADKQRALEETKAYTTQSLASVAYLINTLANNVLQMLDIQA 81 (159)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhchhhhhhHHHHHHH-HHHhhhhhcchhhhhhhccCCCCccccccc------CcccCCCC
Q 038307 99 DEVLDTEHRVSCIEQRLRT-CQEYIDHEGLSQQSLVINTPKYHKRYILPV------KYIGCSLD 155 (322)
Q Consensus 99 ~evs~~ElrIs~l~QrV~~-cek~a~rEgi~q~~l~k~~pr~HKrYI~p~------kY~R~~i~ 155 (322)
++|+.||++|+||+|+|+| +||++||| ||.++++++.+|+||+ |.|+ +|+|+||+
T Consensus 82 ~~l~~mes~v~~l~Q~v~ih~EKvaRre-Ig~lT~~k~~~r~~ki-i~p~~~e~~~~Y~R~pI~ 143 (159)
T 3p8c_F 82 SQLRRMESSINHISQTVDIHKEKVARRE-IGILTTNKNTSRTHKI-IAPANLERPVRYIRKPID 143 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCEECCCCCCCSE-ECCSSCCCCCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhccccccCCcCcc-cCCCCCCCCCCCccCCCc
Confidence 9999999999999999999 99999999 9999999999999995 5553 89999998
No 2
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=88.44 E-value=0.87 Score=42.92 Aligned_cols=71 Identities=23% Similarity=0.323 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHHHH-Hhh----hhhcchhhhhhh
Q 038307 64 VVETLKDYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRTCQ-EYI----DHEGLSQQSLVI 134 (322)
Q Consensus 64 aLEeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~ce-k~a----~rEgi~q~~l~k 134 (322)
+-+++-.-+.-+|++++-|||.|+..-.+++..=..|+..+-.|++.|.+||+-.+ ++. ..|.++.+.++.
T Consensus 22 i~~eLe~V~n~tL~gilRQL~dLs~~A~dIF~eL~~e~~~~~~R~~~L~~RI~~L~~~v~~ld~~~eevSLq~~ns 97 (279)
T 3p8c_D 22 IKNELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAHSFSFRVNSLQERVDRLSVSVTQLDPKEEELSLQDITM 97 (279)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCCCTHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhc
Confidence 34567778889999999999999999999999999999999999999999999844 443 234466666654
No 3
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=67.40 E-value=19 Score=27.32 Aligned_cols=51 Identities=6% Similarity=0.161 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHHHHHhhh
Q 038307 73 VKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRTCQEYID 123 (322)
Q Consensus 73 vqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~cek~a~ 123 (322)
++-.+..|+..-.+|.+-+.+|+.|..+|..+|..+..|.+-+...++-++
T Consensus 14 Trr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~ 64 (70)
T 3b5n_C 14 TRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVA 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355567889999999999999999999999999999999999998776553
No 4
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=56.57 E-value=17 Score=28.39 Aligned_cols=49 Identities=14% Similarity=0.254 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHHHHHh
Q 038307 73 VKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRTCQEY 121 (322)
Q Consensus 73 vqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~cek~ 121 (322)
++-.+.+|+...-++.+-+.+|+.|..+|..+|..+..|.+-+...++.
T Consensus 29 Trr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~ 77 (83)
T 1l4a_C 29 TRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKN 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788999999999999999999999999999999999998864443
No 5
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=52.00 E-value=71 Score=30.69 Aligned_cols=76 Identities=13% Similarity=0.203 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHH
Q 038307 37 LKNLRTQLYSAAEYFELSYTNDDQKQIVVETLKDYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLR 116 (322)
Q Consensus 37 LkdlrsqL~~aAeYCE~nY~~se~Kq~aLEeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~ 116 (322)
|-+....|..+|..=+ ....++.||+..+..| +.+=++..+|..+-..++.-|...+++|..+=.+|..|++.|.
T Consensus 46 l~~ff~alq~la~~P~----~~~~R~~vl~~a~~La-~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~ 120 (463)
T 2d4y_A 46 LQSFFTSLQTLVSNAE----DPAARQALIGKAEGLV-NQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQIS 120 (463)
T ss_dssp HHHHHHHHHHHHHTTT----CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555554332 2456888999998887 7788888888999999999999999999999999999998886
Q ss_pred H
Q 038307 117 T 117 (322)
Q Consensus 117 ~ 117 (322)
.
T Consensus 121 ~ 121 (463)
T 2d4y_A 121 R 121 (463)
T ss_dssp H
T ss_pred H
Confidence 4
No 6
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=49.01 E-value=44 Score=23.66 Aligned_cols=49 Identities=14% Similarity=0.222 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHHHHHh
Q 038307 73 VKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRTCQEY 121 (322)
Q Consensus 73 vqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~cek~ 121 (322)
++....+++..--++.+.+..|..|-.+|..++..+.-|++-++..++.
T Consensus 2 t~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~ 50 (54)
T 1nhl_A 2 TRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKT 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHH
Confidence 3445566777777778888899999999999999999999988875553
No 7
>2gf4_A Protein VNG1086C; HSR14, structural genomics, PSI, protein structure initiativ northeast structural genomics consortium, NESG, unknown FUN; 2.07A {Halobacterium SP} SCOP: a.8.10.1
Probab=46.77 E-value=1.2e+02 Score=24.77 Aligned_cols=45 Identities=24% Similarity=0.169 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCchhhHHHHHHH-------------HHHHHHHHHH
Q 038307 35 KDLKNLRTQLYSAAEYFELSYTNDDQKQIVVETLK-------------DYAVKALVNT 79 (322)
Q Consensus 35 ~eLkdlrsqL~~aAeYCE~nY~~se~Kq~aLEeTK-------------~YavqALvSV 79 (322)
+||..||..|..|..|||..+.-..+.-..++++. .+||=.|++.
T Consensus 4 eELI~LH~lLv~V~~~~e~~~~~~~~~f~~Y~~L~I~P~hIHKsK~eHK~AIF~L~~~ 61 (100)
T 2gf4_A 4 DELLELHEQMVNIKDQFLGFDHVDETAFAAYEELDVEPSHVHKSKSEHKHAVFLLGNA 61 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTCCTTTTHHHHHHTCCTTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCchhhhHHHHHcCCChhhhcCCHHHHHHHHHHHHHH
Confidence 68999999999999999997755533445666653 4676666554
No 8
>3t9o_A DGC, diguanylate cyclase YDEH; putative zinc sensor, CZB domain, metal protein; 2.20A {Escherichia coli}
Probab=44.40 E-value=49 Score=26.91 Aligned_cols=51 Identities=2% Similarity=0.153 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHHHHh
Q 038307 32 DSLKDLKNLRTQLYSAAEYFELSYTNDDQKQIVVETLKDYAVKALVNTVDHL 83 (322)
Q Consensus 32 ~aL~eLkdlrsqL~~aAeYCE~nY~~se~Kq~aLEeTK~YavqALvSVayhI 83 (322)
.+.++|...|.+++..|.-.-..+-+.+-+...+|+..+ |-++|++++|.+
T Consensus 71 ~~f~~l~~~H~~~H~~a~~ii~~~~~g~~~~a~~~~~e~-as~~~~~~ld~~ 121 (135)
T 3t9o_A 71 PYVRLMDSAHQHMHNCGRELMLAIVENHWQDAHFDAFQE-GLLSFTAALTDY 121 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH-HHHHHHHHHHHH
Confidence 578999999999999998888888776666555665544 445555555443
No 9
>1hy5_A Yersinia pestis virulence protein YOPE; four helix UP-DOWN-UP-DOWN antiparallel bundle, beta hairpin, arginine finger, toxin; 2.25A {Yersinia pestis} SCOP: a.24.11.1
Probab=42.67 E-value=13 Score=31.97 Aligned_cols=67 Identities=13% Similarity=0.194 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHH------HHHhhhhHHHHHHHHHHHHhhhhhchhhhh
Q 038307 36 DLKNLRTQLYSAAEYFELSYTNDDQKQIVVETLKDYAVKALVNT------VDHLGSVTYKVNDILDEKVDEVLDTEHRVS 109 (322)
Q Consensus 36 eLkdlrsqL~~aAeYCE~nY~~se~Kq~aLEeTK~YavqALvSV------ayhIgtVA~kl~~LLd~Q~~evs~~ElrIs 109 (322)
-|+.+-.+|.-+.++|+. ++++||.. |.+. --|-||++..+.++++. +.++...-..|.
T Consensus 53 ~LRSL~TaLqgI~~f~Gs-------------ql~~~A~~-LL~~~IgGiPfsQWGT~Gg~vs~~v~s-A~dLt~Aa~~I~ 117 (136)
T 1hy5_A 53 PLRGSITQCQGLMQFCGG-------------ELQAEASA-ILNTPVCGIPFSQWGTIGGAASAYVAS-GVDLTQAANEIK 117 (136)
T ss_dssp HHHHHHHHHHHHHHHCCH-------------HHHHHHHH-HHHSEETTEEGGGGGCSSSHHHHHHTT-TCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccch-------------hHHHHHHH-HHhccccCccHHHhhccchHHHHHHHh-hHHHHHHHHHHH
Confidence 367788889999999987 67777744 3332 25889999999999994 456777777777
Q ss_pred hHHHHHHH
Q 038307 110 CIEQRLRT 117 (322)
Q Consensus 110 ~l~QrV~~ 117 (322)
-|.|.+.-
T Consensus 118 ~ia~~l~~ 125 (136)
T 1hy5_A 118 GLAQQMQK 125 (136)
T ss_dssp HHHHHTHH
T ss_pred HHHHHHHH
Confidence 77666553
No 10
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=41.52 E-value=1.8e+02 Score=30.01 Aligned_cols=95 Identities=8% Similarity=0.134 Sum_probs=53.5
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHH----HHHHHHhhC--CCCchhhHH-HHH-----------HHHHHHHHHHHHH
Q 038307 19 YDEVAMQQSLLFSDSLKDLKNLRTQLYS----AAEYFELSY--TNDDQKQIV-VET-----------LKDYAVKALVNTV 80 (322)
Q Consensus 19 ~~E~~m~~~~~F~~aL~eLkdlrsqL~~----aAeYCE~nY--~~se~Kq~a-LEe-----------TK~YavqALvSVa 80 (322)
+-.+..+++..|-+.+++|++...+|.+ +-.|.+.-| ++..+++.. +|+ --.|...=|-+
T Consensus 51 LQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdn-- 128 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIE-- 128 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH--
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHH--
Confidence 3456677888999999999988877753 445655544 666666542 122 11233333333
Q ss_pred HHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHHHHH
Q 038307 81 DHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRTCQE 120 (322)
Q Consensus 81 yhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~cek 120 (322)
||..+ ..|-.-|+.|..+|..||.-|. ..++.|..
T Consensus 129 -QlsnI-rvLQsnLedq~~kIQRLEvDId---iqirsCKg 163 (562)
T 3ghg_A 129 -KVQHI-QLLQKNVRAQLVDMKRLEVDID---IKIRSCRG 163 (562)
T ss_dssp -HHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHGGG
T ss_pred -HHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHhccc
Confidence 33222 3445555566666777766543 34555543
No 11
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=39.32 E-value=1.8e+02 Score=24.71 Aligned_cols=56 Identities=18% Similarity=0.036 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC-----CCCchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 038307 34 LKDLKNLRTQLYSAAEYFELSY-----TNDDQKQIVVETLKDYAVKALVNTVDHLGSVTYKV 90 (322)
Q Consensus 34 L~eLkdlrsqL~~aAeYCE~nY-----~~se~Kq~aLEeTK~YavqALvSVayhIgtVA~kl 90 (322)
+.++..+=.+|.+++|+||..= .+-+--..+.++.++++ +-++..+.++...-..+
T Consensus 83 redi~~L~~~lD~I~D~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ai~~l 143 (227)
T 2olt_A 83 RTDLLELLTQQDKIANKAKDISGRVIGRQLLIPQALQVPFIAYL-QRCIDAVGLAQQVINEL 143 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3677778888888998888641 12122223445555554 33444444444443333
No 12
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=36.39 E-value=1.8e+02 Score=28.46 Aligned_cols=32 Identities=13% Similarity=0.112 Sum_probs=25.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 038307 27 SLLFSDSLKDLKNLRTQLYSAAEYFELSYTND 58 (322)
Q Consensus 27 ~~~F~~aL~eLkdlrsqL~~aAeYCE~nY~~s 58 (322)
...+.+.|++|.++.+..+..--.|...|...
T Consensus 40 l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~ 71 (409)
T 1m1j_C 40 LLEIEGLLQQATNSTGSIEYLIQHIKTIYPSE 71 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34557788888888888888888999998774
No 13
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=34.54 E-value=1.8e+02 Score=24.24 Aligned_cols=52 Identities=12% Similarity=0.229 Sum_probs=31.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHHHHHhhhhhcchh
Q 038307 74 KALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRTCQEYIDHEGLSQ 129 (322)
Q Consensus 74 qALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~cek~a~rEgi~q 129 (322)
..|-++.++|.-++..|.+.++. +.-=..+...|.+|+......++|=|.+.
T Consensus 94 e~l~~a~~~l~d~~~~L~~y~~~----le~DP~rL~~ie~RL~~l~~L~RKyg~~~ 145 (175)
T 4abx_A 94 NELRAALESVQAIAGELRDVAEG----SAADPEALDRVEARLSALSKLKNKYGPTL 145 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT----CCCCHHHHHHHHHHHHHHHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 44555555555555555554442 22223567788899988888887776543
No 14
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=31.58 E-value=1.4e+02 Score=22.64 Aligned_cols=48 Identities=15% Similarity=0.271 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHHHHHh
Q 038307 74 KALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRTCQEY 121 (322)
Q Consensus 74 qALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~cek~ 121 (322)
+....+|+-.--++.+.+..|..|-.+|..++..+.-|.+-+...++.
T Consensus 26 ~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~ 73 (79)
T 1n7s_C 26 RRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKN 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHH
Confidence 444667778888888999999999999999999999999998875544
No 15
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=31.20 E-value=98 Score=29.10 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 038307 64 VVETLKDYAVKALVNTVDHLGSVTYKVNDI 93 (322)
Q Consensus 64 aLEeTK~YavqALvSVayhIgtVA~kl~~L 93 (322)
++.+.+.|+-.-+.++-..|+.|-.++.++
T Consensus 206 s~~~an~yTd~k~~~l~n~I~~V~n~~~q~ 235 (268)
T 2yo3_A 206 SVEEANTYTDQKMGEMNSKIKGVENKMKQI 235 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 567888898888888877777776555443
No 16
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=30.82 E-value=36 Score=26.43 Aligned_cols=69 Identities=25% Similarity=0.213 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHH
Q 038307 41 RTQLYSAAEYFELSYTNDDQKQIVVETLKDYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRT 117 (322)
Q Consensus 41 rsqL~~aAeYCE~nY~~se~Kq~aLEeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~ 117 (322)
..-|..||.|++...-.=.++-.+++..+ -++=|-+|++|-+ ..+-+....++..++.+|..|.++++.
T Consensus 25 ee~l~~aA~~vd~~~~~i~~~~~~~~~~r-~~vmaALnladel-------~~~~~~~~~~~~~~~~~i~~L~~~le~ 93 (104)
T 1t3u_A 25 RANLESAARYLDGKMREIRSSGKVIGADR-VAVMAALNITHDL-------LHRKERLDQESSSTRERVRELLDRVDR 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCSCSHHH-HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777655422111111233322 3444555555443 333333333577888888888888875
No 17
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=28.64 E-value=1.6e+02 Score=21.00 Aligned_cols=53 Identities=9% Similarity=0.178 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHH
Q 038307 65 VETLKDYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRT 117 (322)
Q Consensus 65 LEeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~ 117 (322)
+|.=.+=-...|.+.+--|..+|..+.+=|+.|..-+..++..|....-+|..
T Consensus 4 ~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~ 56 (66)
T 1n7s_D 4 RENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDE 56 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444555678889999999999999999999999999999999988888876
No 18
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=25.15 E-value=2.3e+02 Score=21.56 Aligned_cols=54 Identities=9% Similarity=0.175 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHH
Q 038307 64 VVETLKDYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRT 117 (322)
Q Consensus 64 aLEeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~ 117 (322)
++|.=.|=-...|-.++--|..+|..+..=|+.|..-|..++..|....-+|..
T Consensus 22 ~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~ 75 (87)
T 1sfc_D 22 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDE 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 556666667789999999999999999999999999999999999988888876
No 19
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=25.14 E-value=1.9e+02 Score=22.20 Aligned_cols=53 Identities=11% Similarity=0.199 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHH
Q 038307 65 VETLKDYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRT 117 (322)
Q Consensus 65 LEeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~ 117 (322)
.|.=.+=-...|-.++--|..+|..+..=|+.|...|..++..|..+.-+|..
T Consensus 24 ~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~ 76 (87)
T 1l4a_D 24 REDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDE 76 (87)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445666778889999999999999999999999999999888888888876
No 20
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=24.90 E-value=1.9e+02 Score=20.56 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHH
Q 038307 72 AVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRT 117 (322)
Q Consensus 72 avqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~ 117 (322)
....|.+.|-.|..+|..+.+=|+.|..-+.+++..|....-+|..
T Consensus 10 ~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~ 55 (65)
T 1gl2_D 10 GLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRT 55 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888899999999999999999999999999999888888875
No 21
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=23.33 E-value=1.1e+02 Score=22.77 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHHHHHhhhhh
Q 038307 74 KALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRTCQEYIDHE 125 (322)
Q Consensus 74 qALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~cek~a~rE 125 (322)
++||-+||.|. +||.++-.....+.+.++- |+-|||+
T Consensus 6 KSlVDtVYaLk--------------DqV~eL~qe~k~m~k~lEe-EqkARk~ 42 (56)
T 2w6b_A 6 KSLVDTVYALK--------------DEVQELRQDNKKMKKSLEE-EQRARKD 42 (56)
T ss_dssp HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 68999999875 3344444445555555553 4444443
No 22
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=23.07 E-value=2.8e+02 Score=21.86 Aligned_cols=55 Identities=9% Similarity=0.135 Sum_probs=45.5
Q ss_pred HHHHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHH
Q 038307 63 IVVETLK--DYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRT 117 (322)
Q Consensus 63 ~aLEeTK--~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~ 117 (322)
.+|.+.+ +-.++-|.+.+..|+.+-..|-.|+.+|..-++..|..|.....-|.-
T Consensus 11 ~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~ 67 (109)
T 3hd7_B 11 QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVER 67 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3566544 456788889999999999999999999999999999988887777664
No 23
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=22.67 E-value=2.1e+02 Score=20.79 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHH
Q 038307 70 DYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRT 117 (322)
Q Consensus 70 ~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~ 117 (322)
.-.++-|...+.-|+.+=..|-.|+..|..-|+.+|..|.....-|.-
T Consensus 5 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~ 52 (71)
T 2nps_B 5 ETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVER 52 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 345778888899999999999999999999999999988887777764
No 24
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=22.41 E-value=2.6e+02 Score=23.67 Aligned_cols=35 Identities=3% Similarity=-0.010 Sum_probs=20.7
Q ss_pred hhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHH
Q 038307 83 LGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRT 117 (322)
Q Consensus 83 IgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~ 117 (322)
||.+..-|..+-.+-+..++.+..++..+.|.+.-
T Consensus 44 ig~L~~~l~~~aN~T~~aL~~L~~q~Tslr~~~LQ 78 (125)
T 4g2k_A 44 IGNLVSRLRRLANQTAKSLELLLRVTTEERTFSLI 78 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555566666666666666553
No 25
>2hfi_A Hypothetical protein YPPE; YPPE_bacsu, GFT structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Bacillus subtilis} SCOP: a.24.26.1 PDB: 2im8_A
Probab=22.00 E-value=2.1e+02 Score=23.93 Aligned_cols=59 Identities=24% Similarity=0.307 Sum_probs=46.3
Q ss_pred HHHHHH---hhCCCCchhhHHHHHHHHHHHHHHHH------HHHHhhhhHHHHHHHHHHHHhhhhhch
Q 038307 47 AAEYFE---LSYTNDDQKQIVVETLKDYAVKALVN------TVDHLGSVTYKVNDILDEKVDEVLDTE 105 (322)
Q Consensus 47 aAeYCE---~nY~~se~Kq~aLEeTK~YavqALvS------VayhIgtVA~kl~~LLd~Q~~evs~~E 105 (322)
|-.|-. -.|++..+=..+.|+++..+++|-.. ..+++.+|.|.|..+++.=..+-+.+|
T Consensus 58 a~~~I~~~rpkY~~~~Qie~~~eNie~lsVq~f~~~TskKrF~e~~kSV~Y~L~~i~~~i~~~~~~~~ 125 (131)
T 2hfi_A 58 ALELIKVRRPKYVHKEQIEAVKDNFLELVLQSYVHHIHKKRFKDITESVLYTLHAVKDEIAREDSRLE 125 (131)
T ss_dssp HHHHHHHSCCSSSCHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHHHHHHHHCCC--
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345665 67999999999999999999999875 689999999999999886554444443
No 26
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.73 E-value=60 Score=24.63 Aligned_cols=33 Identities=12% Similarity=0.139 Sum_probs=25.7
Q ss_pred HHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHHHh
Q 038307 21 EVAMQQSLLF--SDSLKDLKNLRTQLYSAAEYFEL 53 (322)
Q Consensus 21 E~~m~~~~~F--~~aL~eLkdlrsqL~~aAeYCE~ 53 (322)
-+.|..+|-| ..|++.||..-.|+++|+||.=.
T Consensus 22 ~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFS 56 (63)
T 1wgn_A 22 CVETVVNMGYSYECVLRAMKKKGENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3455556655 46999999999999999999643
No 27
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=20.31 E-value=1.3e+02 Score=24.43 Aligned_cols=16 Identities=6% Similarity=0.005 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhhCC
Q 038307 41 RTQLYSAAEYFELSYT 56 (322)
Q Consensus 41 rsqL~~aAeYCE~nY~ 56 (322)
-.=|.+|.+||+...-
T Consensus 46 ~~iL~kVieyc~~h~~ 61 (141)
T 1fs1_B 46 AAILKKVIQWCTHHKD 61 (141)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4568999999998773
Done!