Query 038307
Match_columns 322
No_of_seqs 88 out of 104
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 16:33:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038307.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038307hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gf4a1 a.8.10.1 (A:1-89) Nypo 41.8 15 0.0011 27.5 4.5 45 35-79 4-61 (89)
2 d2etsa1 a.24.26.1 (A:1-110) Hy 30.9 32 0.0024 26.3 4.9 61 30-96 42-108 (110)
3 d1r0da_ a.216.1.1 (A:) Hunting 24.3 73 0.0053 25.8 6.3 56 66-123 5-60 (194)
4 d1t3ua_ d.244.1.1 (A:) ZapA ho 22.4 38 0.0028 23.6 3.7 67 42-116 21-87 (92)
5 d2qxfa1 c.55.3.5 (A:8-474) Exo 18.7 63 0.0046 27.9 5.0 33 30-73 433-465 (467)
6 d2im8a1 a.24.26.1 (A:1-123) Hy 17.2 2.1E+02 0.015 21.8 8.5 49 47-95 58-115 (123)
7 d1xk4c1 a.39.1.2 (C:4-86) Calc 15.4 31 0.0023 24.7 1.8 28 101-131 2-33 (83)
8 d1gmua2 d.58.38.1 (A:71-138) U 15.2 29 0.0021 24.4 1.5 12 75-86 14-25 (68)
9 d1eara2 d.58.38.1 (A:75-142) U 14.9 37 0.0027 23.7 2.0 13 74-86 13-25 (68)
10 d2huja1 a.24.26.1 (A:1-120) Hy 14.9 1.9E+02 0.014 22.0 6.5 43 54-96 65-113 (120)
No 1
>d2gf4a1 a.8.10.1 (A:1-89) Nypothetical protein Vng1086c {Halobacterium salinarium [TaxId: 2242]}
Probab=41.84 E-value=15 Score=27.51 Aligned_cols=45 Identities=24% Similarity=0.169 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCchhhHHHHHHH-------------HHHHHHHHHH
Q 038307 35 KDLKNLRTQLYSAAEYFELSYTNDDQKQIVVETLK-------------DYAVKALVNT 79 (322)
Q Consensus 35 ~eLkdlrsqL~~aAeYCE~nY~~se~Kq~aLEeTK-------------~YavqALvSV 79 (322)
+||..||..|..|.+|||......+..-..++++. .||+=.|++.
T Consensus 4 eELi~LH~lLv~v~~~~e~~~~~~~~~f~~Y~~L~i~P~hIHksK~eHk~AIF~L~~~ 61 (89)
T d2gf4a1 4 DELLELHEQMVNIKDQFLGFDHVDETAFAAYEELDVEPSHVHKSKSEHKHAVFLLGNA 61 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTCCTTTTHHHHHHTCCTTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCccchhhhHHHHcCCCHHHhcCcHHHHHHHHHHHHHH
Confidence 68999999999999999976554444444566653 4777777654
No 2
>d2etsa1 a.24.26.1 (A:1-110) Hypothetical protein MW1337 {Staphylococcus aureus [TaxId: 1280]}
Probab=30.94 E-value=32 Score=26.30 Aligned_cols=61 Identities=23% Similarity=0.479 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHH------HHHHhhhhHHHHHHHHHH
Q 038307 30 FSDSLKDLKNLRTQLYSAAEYFELSYTNDDQKQIVVETLKDYAVKALVN------TVDHLGSVTYKVNDILDE 96 (322)
Q Consensus 30 F~~aL~eLkdlrsqL~~aAeYCE~nY~~se~Kq~aLEeTK~YavqALvS------VayhIgtVA~kl~~LLd~ 96 (322)
++..+.++++...+. -.-.|++..+=..+.|+++.-+++|-.. ..+++.+|.|.|..+||.
T Consensus 42 vd~~l~~w~~~a~~~------i~p~y~h~~Qie~~~en~e~lsVq~f~~~ts~KrF~e~~kSv~YtL~~i~d~ 108 (110)
T d2etsa1 42 IDSILNEIKLHREFI------IEVPYMNSRKFELLIANIEQLSVECHFKRTSRKLFIEKLKSVQYDLQNILDG 108 (110)
T ss_dssp HHHHHHHHHHTHHHH------TTSTTCCHHHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh------cCcccCCHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHhc
Confidence 344445555444433 4799999999999999999999998764 689999999999999984
No 3
>d1r0da_ a.216.1.1 (A:) Huntingtin interacting protein 12 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.31 E-value=73 Score=25.76 Aligned_cols=56 Identities=16% Similarity=0.326 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHHHHHHhhh
Q 038307 66 ETLKDYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLRTCQEYID 123 (322)
Q Consensus 66 EeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~~cek~a~ 123 (322)
|++-+-+-+=|+.++..|+..+.+|.+++.-+-+--..+++.|+ +.-++.|..+++
T Consensus 5 ~~~~d~~e~el~~~a~aI~~a~~~l~~~~~~~~~~~~~~~~ev~--~~iL~aAk~La~ 60 (194)
T d1r0da_ 5 EELGAVVDKEMAATSAAIEDAVRRIEDMMNQARHASSGVKLEVN--ERILNSCTDLMK 60 (194)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH--HHHHHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHH--HHHHHHHHHHHH
Confidence 34556666779999999999999999999876543345566554 233333666554
No 4
>d1t3ua_ d.244.1.1 (A:) ZapA homologue PA5227 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=22.43 E-value=38 Score=23.63 Aligned_cols=67 Identities=24% Similarity=0.197 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhchhhhhhHHHHHH
Q 038307 42 TQLYSAAEYFELSYTNDDQKQIVVETLKDYAVKALVNTVDHLGSVTYKVNDILDEKVDEVLDTEHRVSCIEQRLR 116 (322)
Q Consensus 42 sqL~~aAeYCE~nY~~se~Kq~aLEeTK~YavqALvSVayhIgtVA~kl~~LLd~Q~~evs~~ElrIs~l~QrV~ 116 (322)
..|..||+|+....-+-..+-..+...+ .++=|-.++||.+ ..+=+........++.+|..|.++++
T Consensus 21 e~l~~aA~~ln~k~~~l~~~~~~~~~~~-~lvmaaLnla~e~-------~~~~~~~~~~~~~~~~~i~~L~~~ie 87 (92)
T d1t3ua_ 21 ANLESAARYLDGKMREIRSSGKVIGADR-VAVMAALNITHDL-------LHRKERLDQESSSTRERVRELLDRVD 87 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCSCSHHH-HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788887765533222211222211 2344445555443 33322222334555666666666665
No 5
>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]}
Probab=18.75 E-value=63 Score=27.94 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHH
Q 038307 30 FSDSLKDLKNLRTQLYSAAEYFELSYTNDDQKQIVVETLKDYAV 73 (322)
Q Consensus 30 F~~aL~eLkdlrsqL~~aAeYCE~nY~~se~Kq~aLEeTK~Yav 73 (322)
+++++++|.+++. .+-.+++|..+||++++|+-
T Consensus 433 i~~~~~ei~~l~~-----------~~~~~~ek~~iL~~l~~y~~ 465 (467)
T d2qxfa1 433 LQGYADELQMLVQ-----------QYADDKEKVALLKALWQYAD 465 (467)
T ss_dssp HHHHHHHHHHHHH-----------HTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----------hhcCCHHHHHHHHHHHHHHH
Confidence 4566666655543 35568899999999999974
No 6
>d2im8a1 a.24.26.1 (A:1-123) Hypothetical protein YppE {Bacillus subtilis [TaxId: 1423]}
Probab=17.20 E-value=2.1e+02 Score=21.82 Aligned_cols=49 Identities=22% Similarity=0.384 Sum_probs=42.7
Q ss_pred HHHHHHh---hCCCCchhhHHHHHHHHHHHHHHHH------HHHHhhhhHHHHHHHHH
Q 038307 47 AAEYFEL---SYTNDDQKQIVVETLKDYAVKALVN------TVDHLGSVTYKVNDILD 95 (322)
Q Consensus 47 aAeYCE~---nY~~se~Kq~aLEeTK~YavqALvS------VayhIgtVA~kl~~LLd 95 (322)
|..|-.. .|++..+=..+.|+++.-+++|-.. ..+|+.+|.|.|..++|
T Consensus 58 a~~wi~~~rPky~h~~Qie~~~eN~e~lsVq~f~~kts~KrF~e~~kSV~YtL~~i~e 115 (123)
T d2im8a1 58 ALELIKVRRPKYVHKEQIEAVKDNFLELVLQSYVHHIHKKRFKDITESVLYTLHAVKD 115 (123)
T ss_dssp HHHHHHHSCCSSCCHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 4456667 6999999999999999999999875 68999999999988887
No 7
>d1xk4c1 a.39.1.2 (C:4-86) Calcyclin (S100) {Human (Homo sapiens), s100a9 (mrp14) [TaxId: 9606]}
Probab=15.42 E-value=31 Score=24.68 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=19.9
Q ss_pred hhhchhhhhhHHHHHHHHHHhhhhhc----chhhh
Q 038307 101 VLDTEHRVSCIEQRLRTCQEYIDHEG----LSQQS 131 (322)
Q Consensus 101 vs~~ElrIs~l~QrV~~cek~a~rEg----i~q~~ 131 (322)
++++|..|.+ -|.+.++||.++| ++..+
T Consensus 2 ms~LE~ai~~---ii~vFhkYa~~~G~~~tLsk~E 33 (83)
T d1xk4c1 2 MSQLERNIET---IINTFHQYSVKLGHPDTLNQGE 33 (83)
T ss_dssp CCHHHHHHHH---HHHHHHHHHTTSSSTTSBCHHH
T ss_pred cCHHHHHHHH---HHHHHHHHhCcCCCcccCCHHH
Confidence 3456665554 4888999999998 66555
No 8
>d1gmua2 d.58.38.1 (A:71-138) Urease metallochaperone UreE, C-terminal domain {Klebsiella aerogenes [TaxId: 28451]}
Probab=15.17 E-value=29 Score=24.37 Aligned_cols=12 Identities=25% Similarity=0.299 Sum_probs=10.2
Q ss_pred HHHHHHHHhhhh
Q 038307 75 ALVNTVDHLGSV 86 (322)
Q Consensus 75 ALvSVayhIgtV 86 (322)
.|+-+|||||+-
T Consensus 14 ~L~r~A~HLGNR 25 (68)
T d1gmua2 14 MLAKACYALGNR 25 (68)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHcCC
Confidence 488999999984
No 9
>d1eara2 d.58.38.1 (A:75-142) Urease metallochaperone UreE, C-terminal domain {Bacillus pasteurii [TaxId: 1474]}
Probab=14.92 E-value=37 Score=23.67 Aligned_cols=13 Identities=8% Similarity=0.143 Sum_probs=10.5
Q ss_pred HHHHHHHHHhhhh
Q 038307 74 KALVNTVDHLGSV 86 (322)
Q Consensus 74 qALvSVayhIgtV 86 (322)
..|+-+|||||+-
T Consensus 13 ~el~~~a~hlGNR 25 (68)
T d1eara2 13 QEMGKMAFEIGNR 25 (68)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC
Confidence 4578899999984
No 10
>d2huja1 a.24.26.1 (A:1-120) Hypothetical protein Lin2004 {Listeria innocua [TaxId: 1642]}
Probab=14.88 E-value=1.9e+02 Score=22.02 Aligned_cols=43 Identities=23% Similarity=0.308 Sum_probs=38.5
Q ss_pred hCCCCchhhHHHHHHHHHHHHHHHH------HHHHhhhhHHHHHHHHHH
Q 038307 54 SYTNDDQKQIVVETLKDYAVKALVN------TVDHLGSVTYKVNDILDE 96 (322)
Q Consensus 54 nY~~se~Kq~aLEeTK~YavqALvS------VayhIgtVA~kl~~LLd~ 96 (322)
.|++..+=..+.|+++.-+++|-.. ..+++.+|.|.|..+++.
T Consensus 65 ~y~h~~Qie~~~eN~e~lsVq~f~~~ts~KrF~e~~kSV~YtL~~i~~~ 113 (120)
T d2huja1 65 PYLGELQLRQACDNVQMTAVSAFNGRSFYKHFLDHYQSTKYTLTRVRDF 113 (120)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999764 689999999999988874
Done!