Query 038309
Match_columns 139
No_of_seqs 117 out of 207
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 09:41:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038309.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038309hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01301 GPH_sucrose GPH fami 100.0 3.1E-30 6.7E-35 226.6 9.7 112 9-120 366-477 (477)
2 KOG0637 Sucrose transporter an 99.7 1.3E-17 2.8E-22 149.5 3.1 100 16-115 399-498 (498)
3 PRK11551 putative 3-hydroxyphe 97.3 0.0014 3E-08 53.3 7.7 90 27-119 312-401 (406)
4 TIGR00880 2_A_01_02 Multidrug 97.1 0.0034 7.4E-08 41.7 7.0 88 25-116 53-140 (141)
5 PRK05122 major facilitator sup 97.0 0.0026 5.6E-08 51.7 6.7 89 29-121 308-396 (399)
6 PF07690 MFS_1: Major Facilita 96.8 0.0039 8.5E-08 48.3 5.8 90 25-118 87-176 (352)
7 TIGR00892 2A0113 monocarboxyla 96.6 0.001 2.2E-08 56.7 1.8 100 28-130 338-441 (455)
8 TIGR00889 2A0110 nucleoside tr 96.4 0.01 2.2E-07 50.2 6.7 89 28-118 313-406 (418)
9 PRK09874 drug efflux system pr 96.4 0.023 5.1E-07 45.7 8.2 86 31-120 319-404 (408)
10 TIGR00893 2A0114 d-galactonate 96.4 0.01 2.3E-07 45.8 5.9 88 27-118 86-173 (399)
11 TIGR00879 SP MFS transporter, 96.3 0.0062 1.3E-07 48.6 4.7 75 41-119 401-475 (481)
12 TIGR00900 2A0121 H+ Antiporter 96.3 0.015 3.3E-07 45.1 6.4 85 27-115 96-180 (365)
13 PRK10489 enterobactin exporter 96.2 0.012 2.6E-07 48.5 6.0 86 26-115 315-401 (417)
14 PF13347 MFS_2: MFS/sugar tran 96.2 0.0054 1.2E-07 51.2 3.8 69 22-90 314-387 (428)
15 TIGR00792 gph sugar (Glycoside 96.1 0.022 4.9E-07 46.5 6.7 87 25-111 313-417 (437)
16 TIGR00710 efflux_Bcr_CflA drug 96.0 0.027 5.8E-07 44.6 6.6 88 27-118 97-184 (385)
17 TIGR00881 2A0104 phosphoglycer 95.9 0.044 9.5E-07 42.6 7.3 85 27-115 87-172 (379)
18 PRK03545 putative arabinose tr 95.7 0.056 1.2E-06 44.2 7.6 87 28-118 102-188 (390)
19 TIGR00891 2A0112 putative sial 95.6 0.027 5.9E-07 44.6 5.1 81 27-109 104-184 (405)
20 PRK09556 uhpT sugar phosphate 95.5 0.05 1.1E-06 46.1 7.0 87 29-117 128-216 (467)
21 PRK06814 acylglycerophosphoeth 95.5 0.075 1.6E-06 50.0 8.4 86 26-115 111-196 (1140)
22 PRK09952 shikimate transporter 95.4 0.095 2.1E-06 44.3 8.1 85 30-116 350-435 (438)
23 TIGR00899 2A0120 sugar efflux 95.3 0.072 1.6E-06 42.2 6.8 78 32-114 297-374 (375)
24 cd06174 MFS The Major Facilita 95.3 0.038 8.2E-07 42.2 5.0 86 24-113 266-351 (352)
25 TIGR00893 2A0114 d-galactonate 95.3 0.051 1.1E-06 42.0 5.6 71 40-113 328-398 (399)
26 PRK10077 xylE D-xylose transpo 95.2 0.08 1.7E-06 44.0 7.0 88 28-117 125-218 (479)
27 PRK12382 putative transporter; 95.2 0.058 1.3E-06 43.9 6.0 84 27-114 306-389 (392)
28 TIGR00901 2A0125 AmpG-related 95.2 0.15 3.3E-06 40.7 8.3 72 45-118 105-182 (356)
29 PRK10473 multidrug efflux syst 95.1 0.085 1.8E-06 42.9 6.7 87 28-118 96-182 (392)
30 TIGR00711 efflux_EmrB drug res 95.1 0.03 6.5E-07 46.3 4.0 89 28-120 95-183 (485)
31 TIGR00890 2A0111 Oxalate/Forma 95.0 0.042 9.2E-07 42.7 4.5 75 29-107 301-375 (377)
32 TIGR00895 2A0115 benzoate tran 95.0 0.028 6.1E-07 44.2 3.6 87 27-117 109-195 (398)
33 PRK11646 multidrug resistance 94.9 0.064 1.4E-06 44.8 5.6 72 45-118 319-392 (400)
34 TIGR00879 SP MFS transporter, 94.8 0.11 2.4E-06 41.5 6.6 88 26-117 130-220 (481)
35 PRK09528 lacY galactoside perm 94.8 0.16 3.5E-06 42.0 7.7 91 34-128 326-419 (420)
36 TIGR01299 synapt_SV2 synaptic 94.8 0.068 1.5E-06 50.4 6.1 83 30-118 655-737 (742)
37 PRK11102 bicyclomycin/multidru 94.8 0.15 3.2E-06 40.8 7.2 86 28-117 84-169 (377)
38 PRK10091 MFS transport protein 94.8 0.085 1.8E-06 43.2 6.0 87 28-118 96-182 (382)
39 TIGR00887 2A0109 phosphate:H+ 94.7 0.089 1.9E-06 45.2 6.2 93 24-118 116-229 (502)
40 PRK11273 glpT sn-glycerol-3-ph 94.6 0.073 1.6E-06 44.9 5.3 72 45-120 369-441 (452)
41 PRK10054 putative transporter; 94.5 0.1 2.2E-06 43.5 6.0 83 31-118 104-186 (395)
42 PRK03893 putative sialic acid 94.2 0.18 3.8E-06 42.3 6.7 66 46-115 389-455 (496)
43 TIGR00883 2A0106 metabolite-pr 94.2 0.086 1.9E-06 41.2 4.6 83 30-114 103-191 (394)
44 TIGR00899 2A0120 sugar efflux 94.2 0.2 4.4E-06 39.6 6.7 71 46-118 110-180 (375)
45 PRK08633 2-acyl-glycerophospho 94.1 0.24 5.1E-06 46.1 8.0 59 27-87 107-165 (1146)
46 PRK11551 putative 3-hydroxyphe 94.1 0.12 2.7E-06 41.9 5.5 87 27-117 107-193 (406)
47 TIGR00712 glpT glycerol-3-phos 94.1 0.17 3.6E-06 42.5 6.3 83 32-117 127-209 (438)
48 PRK11663 regulatory protein Uh 94.0 0.13 2.9E-06 43.2 5.7 64 47-114 361-424 (434)
49 PRK15403 multidrug efflux syst 94.0 0.2 4.3E-06 42.2 6.6 86 29-118 110-195 (413)
50 TIGR00898 2A0119 cation transp 93.9 0.1 2.2E-06 44.0 4.7 84 27-117 184-267 (505)
51 PRK11652 emrD multidrug resist 93.7 0.22 4.8E-06 40.5 6.2 86 28-117 101-186 (394)
52 TIGR00890 2A0111 Oxalate/Forma 93.6 0.3 6.4E-06 38.0 6.6 84 30-118 98-181 (377)
53 TIGR00898 2A0119 cation transp 93.6 0.23 4.9E-06 42.0 6.3 78 30-113 417-494 (505)
54 PRK10504 putative transporter; 93.6 0.16 3.5E-06 42.4 5.4 90 27-120 102-191 (471)
55 PRK15011 sugar efflux transpor 93.4 0.31 6.8E-06 40.2 6.8 68 49-118 131-198 (393)
56 TIGR00897 2A0118 polyol permea 93.4 0.33 7.2E-06 40.1 7.0 56 57-114 346-401 (402)
57 PRK11663 regulatory protein Uh 93.3 0.22 4.8E-06 41.9 5.9 82 32-117 120-202 (434)
58 PRK11195 lysophospholipid tran 93.3 0.21 4.6E-06 41.6 5.7 84 29-118 94-177 (393)
59 TIGR00894 2A0114euk Na(+)-depe 93.3 0.14 3.1E-06 42.9 4.6 84 29-115 137-220 (465)
60 TIGR02332 HpaX 4-hydroxyphenyl 93.2 0.24 5.3E-06 41.5 5.8 87 30-118 103-193 (412)
61 PRK10213 nepI ribonucleoside t 93.1 0.4 8.7E-06 40.0 7.0 84 29-116 114-197 (394)
62 cd06174 MFS The Major Facilita 93.0 0.29 6.2E-06 37.4 5.5 83 27-113 91-173 (352)
63 PRK09528 lacY galactoside perm 93.0 0.22 4.8E-06 41.2 5.3 59 57-118 137-195 (420)
64 PRK10077 xylE D-xylose transpo 92.9 0.33 7.1E-06 40.4 6.2 86 30-119 370-462 (479)
65 PRK15011 sugar efflux transpor 92.9 0.54 1.2E-05 38.8 7.4 61 48-113 330-390 (393)
66 TIGR01299 synapt_SV2 synaptic 92.8 0.17 3.6E-06 47.9 4.9 89 27-117 259-358 (742)
67 TIGR00900 2A0121 H+ Antiporter 92.8 0.09 2E-06 40.8 2.6 63 24-88 302-364 (365)
68 PRK06814 acylglycerophosphoeth 92.8 0.47 1E-05 44.8 7.7 57 28-86 339-395 (1140)
69 TIGR00903 2A0129 major facilit 92.7 0.38 8.3E-06 40.4 6.3 83 31-118 87-169 (368)
70 PRK09874 drug efflux system pr 92.6 0.44 9.6E-06 38.4 6.4 67 46-116 129-195 (408)
71 PRK10406 alpha-ketoglutarate t 92.6 0.4 8.6E-06 40.2 6.3 75 31-107 132-212 (432)
72 TIGR00886 2A0108 nitrite extru 92.2 0.55 1.2E-05 37.2 6.4 54 29-85 97-150 (366)
73 TIGR00805 oat sodium-independe 92.2 0.27 5.8E-06 45.0 5.2 84 28-113 177-280 (633)
74 PRK08633 2-acyl-glycerophospho 92.1 0.49 1.1E-05 44.1 6.8 82 27-111 326-407 (1146)
75 PF11700 ATG22: Vacuole efflux 92.0 0.55 1.2E-05 41.9 6.9 85 29-116 386-470 (477)
76 PRK15402 multidrug efflux syst 92.0 0.72 1.6E-05 37.8 7.1 85 30-118 108-192 (406)
77 PRK12307 putative sialic acid 91.9 0.2 4.4E-06 40.9 3.7 43 45-89 343-385 (426)
78 PRK09556 uhpT sugar phosphate 91.7 0.28 6.2E-06 41.6 4.5 66 46-113 372-448 (467)
79 PRK15034 nitrate/nitrite trans 91.7 0.58 1.3E-05 42.0 6.6 92 24-118 129-236 (462)
80 PRK10489 enterobactin exporter 91.6 0.71 1.5E-05 38.1 6.6 66 45-114 132-197 (417)
81 PF05977 MFS_3: Transmembrane 91.6 0.68 1.5E-05 41.9 7.0 86 24-113 308-393 (524)
82 PRK03633 putative MFS family t 91.5 0.54 1.2E-05 38.4 5.8 78 32-113 294-371 (381)
83 PRK09705 cynX putative cyanate 91.5 0.43 9.4E-06 39.6 5.3 84 34-119 303-386 (393)
84 PRK11043 putative transporter; 91.1 0.94 2E-05 37.0 6.8 84 30-117 101-184 (401)
85 PRK05122 major facilitator sup 91.0 1.5 3.2E-05 35.7 7.9 58 29-88 118-175 (399)
86 PRK11646 multidrug resistance 90.8 0.91 2E-05 37.9 6.6 83 30-117 106-188 (400)
87 TIGR00883 2A0106 metabolite-pr 90.6 1.4 3.1E-05 34.4 7.2 62 27-90 316-378 (394)
88 PRK14995 methyl viologen resis 90.3 0.84 1.8E-05 39.4 6.1 84 31-118 102-186 (495)
89 PRK10642 proline/glycine betai 90.3 1.9 4.2E-05 37.0 8.3 81 34-118 353-434 (490)
90 PRK10207 dipeptide/tripeptide 90.3 1 2.2E-05 39.6 6.8 83 29-113 111-193 (489)
91 PRK03699 putative transporter; 90.3 1.3 2.9E-05 36.4 7.0 83 27-112 99-181 (394)
92 TIGR00712 glpT glycerol-3-phos 89.9 1.1 2.5E-05 37.5 6.5 65 48-116 370-435 (438)
93 TIGR00882 2A0105 oligosacchari 89.4 1.2 2.6E-05 36.5 6.1 58 58-118 130-187 (396)
94 PRK10642 proline/glycine betai 88.8 1.6 3.6E-05 37.4 6.8 86 29-116 124-215 (490)
95 PRK11902 ampG muropeptide tran 88.7 3.1 6.7E-05 34.4 8.1 82 32-117 103-184 (402)
96 PRK11273 glpT sn-glycerol-3-ph 88.2 1.2 2.6E-05 37.7 5.5 85 28-116 125-210 (452)
97 PRK11010 ampG muropeptide tran 88.1 2.9 6.2E-05 36.5 7.9 68 45-116 338-405 (491)
98 TIGR00792 gph sugar (Glycoside 88.1 1.5 3.3E-05 35.9 5.9 89 27-117 103-198 (437)
99 TIGR00896 CynX cyanate transpo 88.1 2.4 5.2E-05 34.0 6.9 73 31-106 95-167 (355)
100 PRK10406 alpha-ketoglutarate t 87.8 3.9 8.5E-05 34.3 8.3 72 43-118 356-428 (432)
101 PRK09848 glucuronide transport 87.5 2.6 5.7E-05 35.4 7.1 63 27-89 323-390 (448)
102 PRK09669 putative symporter Ya 87.4 2 4.3E-05 36.2 6.3 65 24-90 110-175 (444)
103 PRK09584 tppB putative tripept 87.3 2.1 4.6E-05 37.6 6.7 78 30-109 119-196 (500)
104 PRK11462 putative transporter; 87.2 3.3 7.1E-05 35.8 7.7 67 24-92 110-177 (460)
105 TIGR00897 2A0118 polyol permea 86.9 1.9 4.2E-05 35.7 5.9 57 31-89 113-170 (402)
106 PRK10504 putative transporter; 86.7 2.9 6.3E-05 35.0 6.9 60 29-90 359-418 (471)
107 TIGR00924 yjdL_sub1_fam amino 86.6 1 2.2E-05 39.2 4.2 81 32-116 390-470 (475)
108 KOG1330 Sugar transporter/spin 86.3 0.23 5E-06 45.8 0.1 83 31-119 129-214 (493)
109 TIGR00924 yjdL_sub1_fam amino 85.9 4.8 0.0001 35.0 8.1 82 31-114 110-192 (475)
110 TIGR01301 GPH_sucrose GPH fami 85.9 2 4.4E-05 38.6 5.9 81 36-117 127-222 (477)
111 PRK12382 putative transporter; 85.6 6.5 0.00014 32.0 8.2 56 31-88 120-175 (392)
112 PRK11010 ampG muropeptide tran 85.3 4.6 9.9E-05 35.3 7.7 83 29-114 113-195 (491)
113 PRK09669 putative symporter Ya 84.5 1.8 3.9E-05 36.4 4.7 64 26-89 322-390 (444)
114 TIGR00903 2A0129 major facilit 84.5 5 0.00011 33.7 7.3 66 40-111 297-362 (368)
115 TIGR00710 efflux_Bcr_CflA drug 84.0 5.3 0.00012 31.6 6.9 78 27-112 304-382 (385)
116 TIGR02718 sider_RhtX_FptX side 83.8 4.7 0.0001 33.0 6.7 72 37-111 317-388 (390)
117 PRK03699 putative transporter; 83.7 2.6 5.5E-05 34.7 5.1 79 29-112 300-378 (394)
118 PRK03893 putative sialic acid 83.0 2.2 4.7E-05 35.8 4.5 74 27-104 112-185 (496)
119 TIGR00902 2A0127 phenyl propri 83.0 4.8 0.0001 33.1 6.5 77 29-111 299-376 (382)
120 PF03825 Nuc_H_symport: Nucleo 82.8 5.8 0.00013 34.4 7.2 84 31-116 309-398 (400)
121 PRK09584 tppB putative tripept 82.5 1.7 3.7E-05 38.2 3.9 87 28-116 387-481 (500)
122 PRK11043 putative transporter; 81.7 7.8 0.00017 31.6 7.2 38 29-69 302-339 (401)
123 TIGR00894 2A0114euk Na(+)-depe 81.6 3.5 7.7E-05 34.6 5.3 58 57-114 392-450 (465)
124 PLN00028 nitrate transmembrane 81.6 5.5 0.00012 34.4 6.6 82 30-114 131-219 (476)
125 PRK09952 shikimate transporter 81.2 6.7 0.00015 33.2 6.9 73 31-105 133-211 (438)
126 TIGR00881 2A0104 phosphoglycer 80.6 2.2 4.8E-05 33.1 3.5 60 28-89 315-374 (379)
127 TIGR00902 2A0127 phenyl propri 80.4 9.8 0.00021 31.3 7.4 57 33-93 104-160 (382)
128 TIGR00895 2A0115 benzoate tran 80.3 1.5 3.2E-05 34.5 2.4 56 26-83 341-396 (398)
129 TIGR00892 2A0113 monocarboxyla 80.2 4.9 0.00011 34.4 5.8 81 31-116 116-196 (455)
130 TIGR02718 sider_RhtX_FptX side 80.0 11 0.00024 30.8 7.6 59 58-118 130-188 (390)
131 PRK11195 lysophospholipid tran 79.5 6.1 0.00013 33.0 6.0 58 58-118 327-384 (393)
132 PRK09705 cynX putative cyanate 79.5 11 0.00024 31.3 7.5 78 27-108 101-178 (393)
133 PRK15402 multidrug efflux syst 79.0 16 0.00034 30.0 8.2 52 30-84 316-367 (406)
134 PRK15075 citrate-proton sympor 78.8 15 0.00032 30.9 8.1 56 34-91 342-398 (434)
135 PRK11128 putative 3-phenylprop 78.7 9.4 0.0002 31.3 6.8 58 58-118 125-182 (382)
136 PRK03545 putative arabinose tr 78.4 8.2 0.00018 31.6 6.3 56 57-114 325-380 (390)
137 PRK12307 putative sialic acid 77.9 5.4 0.00012 32.7 5.1 53 30-84 113-165 (426)
138 PLN00028 nitrate transmembrane 77.8 7.1 0.00015 33.7 6.1 54 57-114 379-433 (476)
139 KOG2533 Permease of the major 77.2 3 6.5E-05 37.9 3.8 72 46-119 157-232 (495)
140 TIGR00882 2A0105 oligosacchari 76.9 22 0.00049 29.1 8.5 55 57-113 339-394 (396)
141 TIGR00891 2A0112 putative sial 76.6 3.1 6.8E-05 32.9 3.3 55 33-89 338-392 (405)
142 PRK10429 melibiose:sodium symp 75.2 4.3 9.2E-05 34.8 4.0 64 26-89 327-395 (473)
143 TIGR00887 2A0109 phosphate:H+ 74.9 6.3 0.00014 33.9 5.0 73 43-118 412-492 (502)
144 TIGR02230 ATPase_gene1 F0F1-AT 74.5 6.5 0.00014 29.2 4.3 35 63-97 45-79 (100)
145 KOG3764 Vesicular amine transp 73.0 4.3 9.4E-05 37.4 3.7 79 33-115 171-249 (464)
146 COG2270 Permeases of the major 72.9 17 0.00037 33.4 7.4 88 22-116 344-431 (438)
147 PRK10207 dipeptide/tripeptide 72.9 4.1 8.9E-05 35.9 3.4 88 27-116 383-478 (489)
148 TIGR00788 fbt folate/biopterin 72.5 20 0.00044 31.2 7.6 69 45-116 373-447 (468)
149 TIGR00806 rfc RFC reduced fola 70.4 9.4 0.0002 35.5 5.3 89 27-119 119-207 (511)
150 KOG2504 Monocarboxylate transp 69.7 5.2 0.00011 36.2 3.4 87 25-114 390-476 (509)
151 PRK03633 putative MFS family t 67.9 24 0.00051 28.8 6.7 56 29-86 100-155 (381)
152 PRK14995 methyl viologen resis 66.4 27 0.00058 30.2 7.0 55 27-83 355-409 (495)
153 PRK15462 dipeptide/tripeptide 66.3 32 0.00069 31.2 7.7 69 42-112 119-187 (493)
154 PRK10133 L-fucose transporter; 65.6 19 0.00041 30.9 5.9 54 28-83 122-175 (438)
155 PF05977 MFS_3: Transmembrane 64.5 11 0.00025 34.1 4.6 87 28-118 108-194 (524)
156 TIGR00885 fucP L-fucose:H+ sym 64.1 26 0.00057 29.7 6.5 50 31-84 102-153 (410)
157 PF13347 MFS_2: MFS/sugar tran 61.9 29 0.00063 29.1 6.2 67 24-92 104-171 (428)
158 PRK11652 emrD multidrug resist 60.8 33 0.00072 27.9 6.2 53 57-115 330-382 (394)
159 PRK11902 ampG muropeptide tran 60.5 39 0.00085 27.9 6.7 76 32-115 316-391 (402)
160 PRK15075 citrate-proton sympor 57.4 30 0.00066 29.0 5.6 53 30-84 124-176 (434)
161 PF07857 DUF1632: CEO family ( 56.9 35 0.00075 28.9 5.9 88 22-118 38-140 (254)
162 PF03209 PUCC: PUCC protein; 56.7 43 0.00094 30.3 6.8 93 22-116 88-182 (403)
163 PRK10054 putative transporter; 56.6 91 0.002 26.0 8.3 45 46-93 321-365 (395)
164 COG2814 AraJ Arabinose efflux 56.3 35 0.00075 30.6 6.1 81 31-115 109-189 (394)
165 TIGR00889 2A0110 nucleoside tr 55.6 60 0.0013 27.5 7.2 40 74-116 143-182 (418)
166 PRK09848 glucuronide transport 55.5 34 0.00073 28.8 5.6 26 24-50 110-135 (448)
167 COG2211 MelB Na+/melibiose sym 55.4 45 0.00098 30.6 6.8 93 20-112 324-435 (467)
168 PF07690 MFS_1: Major Facilita 52.5 13 0.00028 28.7 2.5 51 24-76 300-350 (352)
169 PRK10429 melibiose:sodium symp 52.5 66 0.0014 27.6 7.0 35 25-60 108-143 (473)
170 KOG2816 Predicted transporter 52.2 26 0.00056 31.6 4.6 91 30-124 119-209 (463)
171 PRK11128 putative 3-phenylprop 52.1 63 0.0014 26.5 6.5 47 57-106 324-371 (382)
172 COG2271 UhpC Sugar phosphate p 49.9 32 0.00069 31.8 4.9 70 46-119 140-212 (448)
173 PTZ00207 hypothetical protein; 49.8 32 0.0007 32.1 5.0 80 32-117 129-208 (591)
174 PRK11462 putative transporter; 49.7 27 0.00058 30.2 4.2 59 29-87 324-387 (460)
175 TIGR02332 HpaX 4-hydroxyphenyl 49.4 16 0.00035 30.7 2.8 46 57-103 365-410 (412)
176 PF00083 Sugar_tr: Sugar (and 48.8 1.7 3.7E-05 35.9 -3.1 78 39-120 365-442 (451)
177 PRK11102 bicyclomycin/multidru 48.6 95 0.0021 24.8 6.9 52 57-112 318-370 (377)
178 PF00083 Sugar_tr: Sugar (and 47.8 1.7 3.7E-05 35.9 -3.2 86 31-118 110-196 (451)
179 TIGR01272 gluP glucose/galacto 45.9 92 0.002 25.5 6.6 26 93-118 93-118 (310)
180 COG2211 MelB Na+/melibiose sym 40.9 1E+02 0.0022 28.3 6.7 68 23-92 112-180 (467)
181 PRK10213 nepI ribonucleoside t 40.7 1.1E+02 0.0025 25.4 6.5 73 33-110 315-387 (394)
182 TIGR00896 CynX cyanate transpo 40.4 27 0.00058 28.0 2.6 58 32-90 294-351 (355)
183 PRK10091 MFS transport protein 40.3 1.1E+02 0.0024 25.0 6.3 44 65-109 328-371 (382)
184 cd06261 TM_PBP2 Transmembrane 39.6 34 0.00074 25.2 2.9 52 28-81 5-56 (190)
185 PRK09500 potC spermidine/putre 38.5 92 0.002 24.8 5.4 50 28-79 63-112 (256)
186 PRK10952 glycine betaine trans 38.1 54 0.0012 28.7 4.3 65 29-99 151-215 (355)
187 KOG0569 Permease of the major 37.3 1.1E+02 0.0024 28.2 6.3 67 48-118 141-209 (485)
188 KOG2325 Predicted transporter/ 37.3 50 0.0011 30.5 4.2 69 25-97 392-460 (488)
189 PF05624 LSR: Lipolysis stimul 34.0 36 0.00079 22.6 2.0 17 22-38 8-24 (49)
190 COG2223 NarK Nitrate/nitrite t 33.9 43 0.00092 30.6 3.1 67 46-118 127-198 (417)
191 TIGR00711 efflux_EmrB drug res 33.6 60 0.0013 26.9 3.7 52 30-83 355-406 (485)
192 PRK15403 multidrug efflux syst 33.5 1.3E+02 0.0028 25.3 5.8 61 59-121 345-405 (413)
193 COG2814 AraJ Arabinose efflux 33.4 97 0.0021 27.8 5.2 57 57-119 335-391 (394)
194 PRK10473 multidrug efflux syst 33.1 2.7E+02 0.0057 22.6 8.7 28 64-91 326-353 (392)
195 TIGR00788 fbt folate/biopterin 32.9 3.3E+02 0.0072 23.7 9.5 87 28-116 125-211 (468)
196 KOG3188 Uncharacterized conser 31.9 20 0.00042 30.7 0.6 22 66-90 114-135 (246)
197 KOG0255 Synaptic vesicle trans 31.2 95 0.0021 26.7 4.7 50 31-82 179-228 (521)
198 PRK15111 antimicrobial peptide 31.0 86 0.0019 26.1 4.3 60 28-92 99-158 (296)
199 TIGR00901 2A0125 AmpG-related 31.0 49 0.0011 26.4 2.8 41 27-69 313-353 (356)
200 TIGR01167 LPXTG_anchor LPXTG-m 30.4 91 0.002 17.6 3.1 18 89-106 6-23 (34)
201 PF03092 BT1: BT1 family; Int 30.2 1.8E+02 0.0038 25.4 6.2 71 44-116 107-177 (433)
202 TIGR01097 PhnE phosphonate ABC 30.0 1E+02 0.0023 24.4 4.5 66 26-94 62-128 (250)
203 KOG0569 Permease of the major 29.5 1.8E+02 0.0038 26.8 6.3 75 41-120 386-460 (485)
204 COG3402 Uncharacterized conser 27.8 85 0.0018 25.4 3.6 39 78-116 32-70 (161)
205 COG5336 Uncharacterized protei 26.6 1.9E+02 0.004 22.4 5.1 40 72-112 53-93 (116)
206 KOG0254 Predicted transporter 25.4 1.3E+02 0.0029 26.2 4.7 64 48-115 167-230 (513)
207 PF06609 TRI12: Fungal trichot 24.3 2.3E+02 0.005 26.8 6.2 82 30-118 138-222 (599)
208 PRK15034 nitrate/nitrite trans 22.4 2.2E+02 0.0047 25.8 5.5 90 24-119 350-459 (462)
209 COG0659 SUL1 Sulfate permease 22.3 1E+02 0.0022 28.6 3.5 50 41-100 38-87 (554)
210 TIGR02790 nickel_nikC nickel A 21.9 1.5E+02 0.0033 24.0 4.1 51 28-80 65-115 (258)
211 PF15099 PIRT: Phosphoinositid 21.5 40 0.00087 26.4 0.6 52 57-114 44-105 (129)
212 PF07172 GRP: Glycine rich pro 21.3 1.5E+02 0.0032 21.5 3.5 19 95-113 10-28 (95)
213 PRK10913 dipeptide transporter 21.3 1.4E+02 0.0031 25.0 3.9 50 29-80 103-152 (300)
214 PRK10133 L-fucose transporter; 21.2 3.7E+02 0.008 23.0 6.5 81 26-111 350-430 (438)
215 PRK10452 multidrug efflux syst 21.0 1.7E+02 0.0036 22.0 3.9 31 86-116 76-106 (120)
216 KOG4332 Predicted sugar transp 20.7 1.8E+02 0.0039 26.6 4.6 80 24-112 349-429 (454)
No 1
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.96 E-value=3.1e-30 Score=226.60 Aligned_cols=112 Identities=62% Similarity=1.011 Sum_probs=106.6
Q ss_pred CCCceecCCCCcchHHHHHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhc
Q 038309 9 AGGATHILPPPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVC 88 (139)
Q Consensus 9 ~~~~~~~~~p~~~~~~~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lf 88 (139)
.++.++..+|+.|+|++++++|+++||+||+++|+||+|+++.++++++|||+|||+||++||+|||+++++.|+|+++|
T Consensus 366 ~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~ 445 (477)
T TIGR01301 366 YDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLF 445 (477)
T ss_pred ccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45667777899999999999999999999999999999999999987789999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhhcccCCCCC
Q 038309 89 GGGNMPAFMVGAVAAALSGIVALTLLPSTTAD 120 (139)
Q Consensus 89 gg~~~~A~v~ggv~~liaail~~~i~p~~~~~ 120 (139)
|+++.+++.+||+++++||+++++++||++++
T Consensus 446 g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~~ 477 (477)
T TIGR01301 446 GGGNLPAFVVGAVAAFVSGLLALILLPRPRVD 477 (477)
T ss_pred CCCCeeHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999999999864
No 2
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=99.68 E-value=1.3e-17 Score=149.53 Aligned_cols=100 Identities=60% Similarity=0.913 Sum_probs=95.8
Q ss_pred CCCCcchHHHHHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhH
Q 038309 16 LPPPVGVKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPA 95 (139)
Q Consensus 16 ~~p~~~~~~~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A 95 (139)
..|...++..++.++..+|+|||+++|+||++.|..+.++|.++|+..|++|.+|+||||+++++.||||++||++|.++
T Consensus 399 ~~~~~~~p~~l~~~y~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~ 478 (498)
T KOG0637|consen 399 SSPLLTVPYGALALYAILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPA 478 (498)
T ss_pred ecchhcccHHHHHHHHHhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhH
Confidence 35888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccc
Q 038309 96 FMVGAVAAALSGIVALTLLP 115 (139)
Q Consensus 96 ~v~ggv~~liaail~~~i~p 115 (139)
++.++++++++++.++++.|
T Consensus 479 ~~~~a~s~~~~~i~al~v~~ 498 (498)
T KOG0637|consen 479 FVSGAVALLIGGIVALLVLY 498 (498)
T ss_pred HHHHHHHHHHHHHHheEecC
Confidence 99999999999999998764
No 3
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=97.27 E-value=0.0014 Score=53.25 Aligned_cols=90 Identities=21% Similarity=0.200 Sum_probs=69.7
Q ss_pred HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309 27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS 106 (139)
Q Consensus 27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia 106 (139)
.+....+|+.+....+..++++.+..|+ +.+|..+|+.|...-+.+.+.+...|.+.+. +++....+..+..+.+++
T Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~-~~~~~~~~~~~~~~~~~~ 388 (406)
T PRK11551 312 LLAGFAAGLFVVGGQSVLYALAPLFYPT--QVRGTGVGAAVAVGRLGSMAGPLLAGQLLAL-GRSTVGVIGASIPVILVA 388 (406)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHcch--hhhhhhhhHHHHhhhHHHHHHhhhHhhhhcc-CCchHHHHHHHHHHHHHH
Confidence 3455667888888888888999999988 6789999999999999988888878876654 345556677777888888
Q ss_pred HHHhhhcccCCCC
Q 038309 107 GIVALTLLPSTTA 119 (139)
Q Consensus 107 ail~~~i~p~~~~ 119 (139)
.++++++.+|++.
T Consensus 389 ~~~~~~~~~~~~~ 401 (406)
T PRK11551 389 ALAALLLVSRPSR 401 (406)
T ss_pred HHHHHHHhcchhc
Confidence 8888877666553
No 4
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.09 E-value=0.0034 Score=41.73 Aligned_cols=88 Identities=20% Similarity=0.243 Sum_probs=67.1
Q ss_pred HHHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHH
Q 038309 25 GALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAA 104 (139)
Q Consensus 25 ~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~l 104 (139)
..++.+...|+..+......++++.+..++ +.++..+|+.|....+-+.+.....+.+.+.+ +-...+.+.++..+
T Consensus 53 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 128 (141)
T TIGR00880 53 VLIIARFLQGFGAAFALVAGAALIADIYPP--EERGVALGLMSAGIALGPLLGPPLGGVLAQFL--GWRAPFLFLAILAL 128 (141)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHCCh--hhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc--chHHHHHHHHHHHH
Confidence 344566788888888888888998999887 56899999999999999888877777665432 23456777778888
Q ss_pred HHHHHhhhcccC
Q 038309 105 LSGIVALTLLPS 116 (139)
Q Consensus 105 iaail~~~i~p~ 116 (139)
++.++.+++.|+
T Consensus 129 ~~~~~~~~~~~~ 140 (141)
T TIGR00880 129 AAFILLAFLLPE 140 (141)
T ss_pred HHHHHHhhcCCC
Confidence 888777776653
No 5
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=96.97 E-value=0.0026 Score=51.67 Aligned_cols=89 Identities=18% Similarity=0.168 Sum_probs=61.3
Q ss_pred HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHH
Q 038309 29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGI 108 (139)
Q Consensus 29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaai 108 (139)
...+.|+..+..+..-.+.+.+..++ +++|..+|++|....+-+.+.+...|.+.+.+| -..++.+.++..+++.+
T Consensus 308 ~~~l~G~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~ 383 (399)
T PRK05122 308 GAALTGFGFSLVFPALGVEAVKRVPP--QNRGAALGAYSVFLDLSLGITGPLAGLVASWFG--YPSIFLAAALAALLGLA 383 (399)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHH
Confidence 34455555554443222444566666 678999999999999988887776777655544 45677788888888888
Q ss_pred HhhhcccCCCCCC
Q 038309 109 VALTLLPSTTADV 121 (139)
Q Consensus 109 l~~~i~p~~~~~~ 121 (139)
+.+++.+|+++|.
T Consensus 384 ~~~~~~~~~~~~~ 396 (399)
T PRK05122 384 LTWLLYRRAPRAV 396 (399)
T ss_pred HHHHhcccccccC
Confidence 8887777766653
No 6
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=96.75 E-value=0.0039 Score=48.27 Aligned_cols=90 Identities=21% Similarity=0.286 Sum_probs=68.1
Q ss_pred HHHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHH
Q 038309 25 GALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAA 104 (139)
Q Consensus 25 ~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~l 104 (139)
.-++...+.|+..+.....-.+++++..++ ++++.++|+.+...-+-.++..+.++.+.+.++ -...+.+.++..+
T Consensus 87 ~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~--~~~~~~~~~~~~~ 162 (352)
T PF07690_consen 87 LLLIARFLLGIGSGFFSPASNALIADWFPP--EERGRAFGILSAGFSLGSILGPLLGGFLISYFG--WRWAFLISAILSL 162 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH--HCCHHHHHHHHHH
T ss_pred HHhhhccccccccccccccccccccccchh--hhhhhccccccchhhhhhhcccchhhhhhhccc--cccccccccchhh
Confidence 455666788888888898999999999998 689999999999999999888777777655444 3446888888888
Q ss_pred HHHHHhhhcccCCC
Q 038309 105 LSGIVALTLLPSTT 118 (139)
Q Consensus 105 iaail~~~i~p~~~ 118 (139)
++.++..+..++++
T Consensus 163 ~~~il~~~~~~~~~ 176 (352)
T PF07690_consen 163 IAAILFILFLPEPP 176 (352)
T ss_dssp HHHHHHHCCC---S
T ss_pred hhhhhHhhhhhhcc
Confidence 88886544444333
No 7
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=96.60 E-value=0.001 Score=56.69 Aligned_cols=100 Identities=8% Similarity=0.098 Sum_probs=69.9
Q ss_pred HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHH
Q 038309 28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSG 107 (139)
Q Consensus 28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaa 107 (139)
+.....|+.++......++++.+..++ ++.|..+|++|.+.-+-+++....+|.+.+.+++ -...+.++++.+++++
T Consensus 338 i~~~~~G~~~g~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~-~~~~f~~~~~~~li~~ 414 (455)
T TIGR00892 338 IYCIFFGLSFGSVGALLFEVLMDLVGA--QRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKN-YKYIFYASGSIVVSAG 414 (455)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHhhH--HHHhhHHhHHHHHHHHHHHccccceeeeehhcCC-cchHHHHhhHHHHHHH
Confidence 344556666666667778888888887 5789999999999999999999888887665543 4467777777777766
Q ss_pred HHhh----hcccCCCCCCCCCcccccc
Q 038309 108 IVAL----TLLPSTTADVPPPITEAGT 130 (139)
Q Consensus 108 il~~----~i~p~~~~~~~~~~~~~~~ 130 (139)
++.+ +..-..+||++..+.|.|.
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (455)
T TIGR00892 415 LFLAIGNYINYRLLAKEQKAALEREGA 441 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5332 2334445666666666554
No 8
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=96.43 E-value=0.01 Score=50.23 Aligned_cols=89 Identities=10% Similarity=-0.004 Sum_probs=66.4
Q ss_pred HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhh-hhhhhHHHHHHhhhcchhhhcCCCch----hHHHHHHHH
Q 038309 28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLN-LAIVVPQMLVSLLSGPFDAVCGGGNM----PAFMVGAVA 102 (139)
Q Consensus 28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN-~~IVIPQii~sl~~G~~~~lfgg~~~----~A~v~ggv~ 102 (139)
+...+.|+.++........++++..|+ +.+|.++|+.| ....+-.++..+.+|.+.+.+|+.+. .++.+.+++
T Consensus 313 l~~~l~g~~~~~~~~~~~~~i~~~~p~--~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~ 390 (418)
T TIGR00889 313 LSMIVYGCAFDFFNISGSVFVEKEVPV--HIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGY 390 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 345567777776666666777888887 57999999998 45678888888888887777776554 678888888
Q ss_pred HHHHHHHhhhcccCCC
Q 038309 103 AALSGIVALTLLPSTT 118 (139)
Q Consensus 103 ~liaail~~~i~p~~~ 118 (139)
.++++++.+++.+++.
T Consensus 391 ~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 391 IAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHHHHhCCcc
Confidence 8888888876665444
No 9
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=96.37 E-value=0.023 Score=45.72 Aligned_cols=86 Identities=13% Similarity=0.081 Sum_probs=59.0
Q ss_pred HHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHh
Q 038309 31 TVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVA 110 (139)
Q Consensus 31 ~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~ 110 (139)
++.|+..+..+..-.+++....++ +..|-.+|+.+.+--+-+++..+.+|.+.+.+| -...|.+.+++.++++++.
T Consensus 319 ~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g--~~~~f~~~~~~~l~~~~~~ 394 (408)
T PRK09874 319 FLLGAADGALLPAVQTLLVYNSSN--QIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG--FRAVFLVTAGVVLFNAVYS 394 (408)
T ss_pred HHHHhhhHhhHHHHHHHHHHhCCc--ccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHH
Confidence 344555544443333444444454 578999999998888888887777777665543 4568888999999999988
Q ss_pred hhcccCCCCC
Q 038309 111 LTLLPSTTAD 120 (139)
Q Consensus 111 ~~i~p~~~~~ 120 (139)
++..+|++.+
T Consensus 395 ~~~~~~~~~~ 404 (408)
T PRK09874 395 WNSLRRRRIP 404 (408)
T ss_pred HHHHHHhcCc
Confidence 8766665543
No 10
>TIGR00893 2A0114 d-galactonate transporter.
Probab=96.37 E-value=0.01 Score=45.79 Aligned_cols=88 Identities=16% Similarity=0.196 Sum_probs=62.7
Q ss_pred HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309 27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS 106 (139)
Q Consensus 27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia 106 (139)
++...+.|+..+.....-.+++++..|+ +++|..+|+.+...-+-+++.....+.+.+.++ -...+.+.++..++.
T Consensus 86 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~ 161 (399)
T TIGR00893 86 YILRVLLGAAEAPFFPGIILIVASWFPA--SERATAVSIFNSAQGLGGIIGGPLVGWILIHFS--WQWAFIIEGVLGIIW 161 (399)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhCCH--HHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHH
Confidence 3444667777777777778888888887 578999999999999988888776666544433 345666777777777
Q ss_pred HHHhhhcccCCC
Q 038309 107 GIVALTLLPSTT 118 (139)
Q Consensus 107 ail~~~i~p~~~ 118 (139)
.++.++..|+++
T Consensus 162 ~~~~~~~~~~~~ 173 (399)
T TIGR00893 162 GVLWLKFIPDPP 173 (399)
T ss_pred HHHhhheecCCC
Confidence 766665555433
No 11
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=96.34 E-value=0.0062 Score=48.60 Aligned_cols=75 Identities=17% Similarity=0.128 Sum_probs=56.0
Q ss_pred hhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccCCCC
Q 038309 41 FSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTA 119 (139)
Q Consensus 41 lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~~~~ 119 (139)
..+.++++++..|+ +.+|..+|+.|+.-.+-+++..+..|.+.+-+ +....+.+.+++.++++++++++.|+++.
T Consensus 401 ~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~--~~~~~f~~~~~~~~~~~i~~~~~~~~~~~ 475 (481)
T TIGR00879 401 GPVPWVIVSEIFPL--SLRPKGISIAVAANWLANFIVGFLFPTMLESI--GVGGVFIFFGGLNVLGLIFVYFFLPETKG 475 (481)
T ss_pred cCeehhhhhccCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CccceehhHHHHHHHHHHHHheecccCCC
Confidence 35667777888887 57899999999999999998888777655433 24456667777788888888777776553
No 12
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=96.27 E-value=0.015 Score=45.07 Aligned_cols=85 Identities=18% Similarity=0.076 Sum_probs=62.9
Q ss_pred HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309 27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS 106 (139)
Q Consensus 27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia 106 (139)
++...+.|+..+.....-.+++++..++ ++.+..+|+.+....+-+++..+.++.+.+.++ -...+.+.++..+++
T Consensus 96 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g--~~~~~~~~~~~~~~~ 171 (365)
T TIGR00900 96 YVLAGILAIAQAFFTPAYQAMLPDLVPE--EQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG--IKWAIWVDAVGFAIS 171 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHH
Confidence 3445566777777777777888888887 578999999999999999888887777665443 345667777777777
Q ss_pred HHHhhhccc
Q 038309 107 GIVALTLLP 115 (139)
Q Consensus 107 ail~~~i~p 115 (139)
.++.+++++
T Consensus 172 ~~~~~~~~~ 180 (365)
T TIGR00900 172 ALLIVSVRI 180 (365)
T ss_pred HHHHHhccc
Confidence 766665544
No 13
>PRK10489 enterobactin exporter EntS; Provisional
Probab=96.25 E-value=0.012 Score=48.50 Aligned_cols=86 Identities=15% Similarity=0.132 Sum_probs=58.4
Q ss_pred HHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHH-HHHHHHH
Q 038309 26 ALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFM-VGAVAAA 104 (139)
Q Consensus 26 al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v-~ggv~~l 104 (139)
.++.+..+|+..+....+-++++.+..|+ +.+|..+|+++.+.-+-+.+.+...|.+.+.+|. ..++. .+++.++
T Consensus 315 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~--~~~~~~~~~~~~~ 390 (417)
T PRK10489 315 AVLCLALFGYLSAISSLLQYTLLQTQTPD--EMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTP--VASASASGFGLLI 390 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCH--HHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhch--hhHHHHHHHHHHH
Confidence 34455556666666556667888888887 5689999999999989999998888887776543 34444 4445555
Q ss_pred HHHHHhhhccc
Q 038309 105 LSGIVALTLLP 115 (139)
Q Consensus 105 iaail~~~i~p 115 (139)
++.++.+.+.+
T Consensus 391 ~~~~~~~~~~~ 401 (417)
T PRK10489 391 IGVLLLLVLGE 401 (417)
T ss_pred HHHHHHHhccc
Confidence 55555554443
No 14
>PF13347 MFS_2: MFS/sugar transport protein
Probab=96.20 E-value=0.0054 Score=51.23 Aligned_cols=69 Identities=23% Similarity=0.278 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHhchHHHHHhhchhHhhhhhccCCC-----CCceeeechhhhhhhhHHHHHHhhhcchhhhcCC
Q 038309 22 VKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSA-----AGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGG 90 (139)
Q Consensus 22 ~~~~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g-----~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg 90 (139)
-....++++++.|++++..+.+|++|+++.++.++ ++.|+++|+.|++.-+.|-+.....|.+.++.|=
T Consensus 314 ~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 314 SPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred hHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 44677788899999999999999999999997432 4579999999999999999999888887765543
No 15
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=96.07 E-value=0.022 Score=46.53 Aligned_cols=87 Identities=20% Similarity=0.201 Sum_probs=63.7
Q ss_pred HHHHHHHHhchHHHHHhhchhHhhhhhccCC-----CCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCc-------
Q 038309 25 GALAIFTVLGIPQAITFSVPFAMASIFSRTS-----AAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGN------- 92 (139)
Q Consensus 25 ~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~-----g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~------- 92 (139)
..++++++.|+.++..+.+++++++..++.. .++.|.++|++|++.-+.+.+.....|.+.+.+|=+.
T Consensus 313 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~~~~~~~~~ 392 (437)
T TIGR00792 313 LILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYVANAAQSPI 392 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCCHH
Confidence 4455667789999999999999999887621 2457999999999999999999888887766544221
Q ss_pred ------hhHHHHHHHHHHHHHHHhh
Q 038309 93 ------MPAFMVGAVAAALSGIVAL 111 (139)
Q Consensus 93 ------~~A~v~ggv~~liaail~~ 111 (139)
.....+.+++.+++.++.+
T Consensus 393 ~~~~~~~~~~~~p~i~~~~~~~~~~ 417 (437)
T TIGR00792 393 TLNGIKILMFAVPALFLLLAAIIIG 417 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234456677777777665
No 16
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=95.97 E-value=0.027 Score=44.62 Aligned_cols=88 Identities=15% Similarity=0.101 Sum_probs=62.3
Q ss_pred HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309 27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS 106 (139)
Q Consensus 27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia 106 (139)
++...+.|+..+.....-.+++++..++ +++|..+|+.+...-+-+++....++.+.+.++ -..++.+.++..++.
T Consensus 97 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~--~~~~~~~~~~~~~~~ 172 (385)
T TIGR00710 97 LVLRFVQAFGASAGSVISQALVRDIYPG--EELSRIYSILMPVLALAPAVAPLLGGYILVWLS--WHAIFAFLSLAGILL 172 (385)
T ss_pred HHHHHHHHcchhHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHH
Confidence 3345567777777777777888888886 578999999999888888887777776554432 344566666666677
Q ss_pred HHHhhhcccCCC
Q 038309 107 GIVALTLLPSTT 118 (139)
Q Consensus 107 ail~~~i~p~~~ 118 (139)
.++.++..|+.+
T Consensus 173 ~~~~~~~~~~~~ 184 (385)
T TIGR00710 173 SALIFFILPETL 184 (385)
T ss_pred HHHHHHhCCCCC
Confidence 666666555544
No 17
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=95.90 E-value=0.044 Score=42.61 Aligned_cols=85 Identities=16% Similarity=0.161 Sum_probs=55.1
Q ss_pred HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHH-hhhcchhhhcCCCchhHHHHHHHHHHH
Q 038309 27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVS-LLSGPFDAVCGGGNMPAFMVGAVAAAL 105 (139)
Q Consensus 27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~s-l~~G~~~~lfgg~~~~A~v~ggv~~li 105 (139)
++...+.|+..+.....-++++++..++ +++|..+|+.|....+-+++.. +.++.+...+ +-...+.+.++..++
T Consensus 87 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 162 (379)
T TIGR00881 87 AALWALNGIFQGMGWPPCGRTVTKWFSR--SERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY--SWHWVFIVPGIIAII 162 (379)
T ss_pred HHHHHHHHhhccccCCchHHHHHHhcCH--hhheeeEeehhccchhHHHHHHHHHHHHHHhcC--CchhHHHHHHHHHHH
Confidence 3445566777777777777888888887 5789999999998888777776 3333333332 223446666665555
Q ss_pred HHHHhhhccc
Q 038309 106 SGIVALTLLP 115 (139)
Q Consensus 106 aail~~~i~p 115 (139)
.++++++..+
T Consensus 163 ~~~~~~~~~~ 172 (379)
T TIGR00881 163 VSLICFLLLR 172 (379)
T ss_pred HHHHHheeeC
Confidence 5555554444
No 18
>PRK03545 putative arabinose transporter; Provisional
Probab=95.71 E-value=0.056 Score=44.16 Aligned_cols=87 Identities=16% Similarity=0.167 Sum_probs=61.2
Q ss_pred HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHH
Q 038309 28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSG 107 (139)
Q Consensus 28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaa 107 (139)
+...+.|+..+.......+++++..++ ++.|..+|+++....+-+.+....++.+.+.+ +-..++.+.++..++..
T Consensus 102 ~~r~~~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~--gw~~~f~~~~~~~~l~~ 177 (390)
T PRK03545 102 ISRIGIAFAHAIFWSITASLAIRVAPA--GKKAQALSLLATGTALAMVLGLPLGRVIGQYL--GWRTTFLAIGGGALITL 177 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCh--hhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh--cHHHHHHHHHHHHHHHH
Confidence 344567777777777777888888887 67899999999888888777766666655543 33456677777667776
Q ss_pred HHhhhcccCCC
Q 038309 108 IVALTLLPSTT 118 (139)
Q Consensus 108 il~~~i~p~~~ 118 (139)
++.++..|+++
T Consensus 178 ~~~~~~~~~~~ 188 (390)
T PRK03545 178 LLLIKLLPLLP 188 (390)
T ss_pred HHHHHhCCCCC
Confidence 66666555543
No 19
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=95.55 E-value=0.027 Score=44.60 Aligned_cols=81 Identities=14% Similarity=0.087 Sum_probs=56.6
Q ss_pred HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309 27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS 106 (139)
Q Consensus 27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia 106 (139)
++...+.|+..+..+....+++++..++ +++|..+|+++....+-+++..+.++.+.+.++.+-...+.++++..++.
T Consensus 104 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~ 181 (405)
T TIGR00891 104 FIARLVIGIGMGGEYGSSAAYVIESWPK--HLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181 (405)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHhCCh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 3445667777777777778888888887 67899999999988888888777666655554433445666666555554
Q ss_pred HHH
Q 038309 107 GIV 109 (139)
Q Consensus 107 ail 109 (139)
.++
T Consensus 182 ~~~ 184 (405)
T TIGR00891 182 LWL 184 (405)
T ss_pred HHH
Confidence 433
No 20
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=95.53 E-value=0.05 Score=46.11 Aligned_cols=87 Identities=14% Similarity=0.153 Sum_probs=59.5
Q ss_pred HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhh-hcCCCchhHHHHHHHHHHHHH
Q 038309 29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDA-VCGGGNMPAFMVGAVAAALSG 107 (139)
Q Consensus 29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~-lfgg~~~~A~v~ggv~~liaa 107 (139)
+..+.|+..+.......+++++..|+ +++|..+|+++....+=.++..+......+ .++++-...|.+.|+..++.+
T Consensus 128 ~r~l~G~~~~~~~~~~~~~i~~~~~~--~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~ 205 (467)
T PRK09556 128 LWALSGFFQSTGGPCSYSTITRWTPR--RKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIG 205 (467)
T ss_pred HHHHHHHHHhccchHHHHHHHHHcCc--cceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHH
Confidence 34456777777677777888999988 679999999999888877776664443333 345555566777676666666
Q ss_pred HHhhhc-ccCC
Q 038309 108 IVALTL-LPST 117 (139)
Q Consensus 108 il~~~i-~p~~ 117 (139)
++++++ +++|
T Consensus 206 i~~~~~~~~~p 216 (467)
T PRK09556 206 FIGLRYGSDSP 216 (467)
T ss_pred HHHHHhCCCCh
Confidence 666654 4443
No 21
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=95.46 E-value=0.075 Score=49.97 Aligned_cols=86 Identities=10% Similarity=0.065 Sum_probs=65.5
Q ss_pred HHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHH
Q 038309 26 ALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAAL 105 (139)
Q Consensus 26 al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~li 105 (139)
-+++..+.|+..|......++++....++ ++.+..||++++..-+-+++..+.+|.+...+ +....|++++++.++
T Consensus 111 l~~~~~l~gi~~a~~~p~~~a~l~~~~~~--~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~--~~~~~~~~~~~~~~~ 186 (1140)
T PRK06814 111 LFAALFLMGIHSALFGPIKYSILPDHLNK--DELLGANALVEAGTFIAILLGTIIGGLATISG--NFVILVALLMGIAVL 186 (1140)
T ss_pred HHHHHHHHHHHHHhhchHHHHhhHhhcCc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHH
Confidence 34456677888898889999999999998 67899999999999999999988888877654 345566555565665
Q ss_pred HHHHhhhccc
Q 038309 106 SGIVALTLLP 115 (139)
Q Consensus 106 aail~~~i~p 115 (139)
+.++++++.+
T Consensus 187 ~~~~~~~~~~ 196 (1140)
T PRK06814 187 GWLASLFIPK 196 (1140)
T ss_pred HHHHHhhCCC
Confidence 5555554443
No 22
>PRK09952 shikimate transporter; Provisional
Probab=95.37 E-value=0.095 Score=44.30 Aligned_cols=85 Identities=15% Similarity=0.135 Sum_probs=56.3
Q ss_pred HHHhchHHHHHhhchhHhhhhhccCCCCCceeeechh-hhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHH
Q 038309 30 FTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVL-NLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGI 108 (139)
Q Consensus 30 f~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIf-N~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaai 108 (139)
+...|+..+...++-++++++..|. +..+..+|+. |+.-.+-..+.....|.+.+..+++....+.+.+++++++++
T Consensus 350 ~~l~~~~~~~~~~~~~~~~~e~~p~--~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v 427 (438)
T PRK09952 350 IMLANIAHDMVVCVQQPMFTEMFGA--SYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAM 427 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCc--chhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 3444666666666667888888887 3445555553 444445666666666666555555556678888888999999
Q ss_pred HhhhcccC
Q 038309 109 VALTLLPS 116 (139)
Q Consensus 109 l~~~i~p~ 116 (139)
.+++++++
T Consensus 428 ~~~~~~~~ 435 (438)
T PRK09952 428 TALLMKDN 435 (438)
T ss_pred HHHHcccc
Confidence 88877553
No 23
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=95.33 E-value=0.072 Score=42.17 Aligned_cols=78 Identities=9% Similarity=0.010 Sum_probs=56.3
Q ss_pred HhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhh
Q 038309 32 VLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVAL 111 (139)
Q Consensus 32 ~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~ 111 (139)
+.|+.++....+.++.+.+..|+ +.|..+|++|.+.-+.+.+.++.+|.+.+.+| -...+.+.+++.+++.++.+
T Consensus 297 ~~g~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g--~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 297 LNAIFIGILAGIGMLYFQDLMPG---RAGAATTLYTNTGRVGWIIAGSVGGILAERWS--YHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHh
Confidence 33444454444445555555554 46789999999998999998888887766543 55678888999999998887
Q ss_pred hcc
Q 038309 112 TLL 114 (139)
Q Consensus 112 ~i~ 114 (139)
+++
T Consensus 372 ~~~ 374 (375)
T TIGR00899 372 LIK 374 (375)
T ss_pred eec
Confidence 764
No 24
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=95.31 E-value=0.038 Score=42.22 Aligned_cols=86 Identities=24% Similarity=0.316 Sum_probs=69.6
Q ss_pred HHHHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHH
Q 038309 24 VGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAA 103 (139)
Q Consensus 24 ~~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~ 103 (139)
......+...|+..+.......+++.+..|+ ++.|..+|+.|..--+-+.+.+...|.+.+. .+-...+.+.++..
T Consensus 266 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~--~~~~~~~~~~~~~~ 341 (352)
T cd06174 266 ALLLVALLLLGFGLGFAFPALLTLASELAPP--EARGTASGLFNTFGSLGGALGPLLAGLLLDT--GGYGGVFLILAALA 341 (352)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHhhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCcchHHHHHHHHH
Confidence 4455677788888999999999999999987 6789999999999999999988877776553 34567788888888
Q ss_pred HHHHHHhhhc
Q 038309 104 ALSGIVALTL 113 (139)
Q Consensus 104 liaail~~~i 113 (139)
+++.++.+++
T Consensus 342 ~i~~i~~~~~ 351 (352)
T cd06174 342 LLAALLLLLL 351 (352)
T ss_pred HHHHHHheec
Confidence 8888776643
No 25
>TIGR00893 2A0114 d-galactonate transporter.
Probab=95.25 E-value=0.051 Score=42.00 Aligned_cols=71 Identities=23% Similarity=0.208 Sum_probs=56.2
Q ss_pred HhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhc
Q 038309 40 TFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTL 113 (139)
Q Consensus 40 ~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i 113 (139)
.....++++++..|+ +.+|.++|+.|....+.+.+.....|.+.+.+| +-.+.+.+.+++.+++.++.+++
T Consensus 328 ~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 398 (399)
T TIGR00893 328 AGAIGWALISDNAPG--NIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG-SFAGALMVVAALALIGALSYLLL 398 (399)
T ss_pred hhhHHHHHHHhhcCh--hHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC-chhHHHHHHHHHHHHHHHHHHHh
Confidence 567778888898887 678999999999999999988887777666543 24567888888888888777653
No 26
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=95.23 E-value=0.08 Score=44.01 Aligned_cols=88 Identities=14% Similarity=0.066 Sum_probs=62.3
Q ss_pred HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhc-----C-CCchhHHHHHHH
Q 038309 28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVC-----G-GGNMPAFMVGAV 101 (139)
Q Consensus 28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lf-----g-g~~~~A~v~ggv 101 (139)
+.=++.|+..+..+....+++++..|+ +++|.+||+.+....+-+++..+.++...... + -+-...|.+.++
T Consensus 125 ~~R~l~G~~~g~~~~~~~~~i~e~~~~--~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~ 202 (479)
T PRK10077 125 IYRIIGGIGVGLASMLSPMYIAEIAPA--HIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAI 202 (479)
T ss_pred HHHHHHhhhHhHHhhHHHHHHHhhCCh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHH
Confidence 444677899999999999999999998 67999999999999888888766544332211 1 122346777778
Q ss_pred HHHHHHHHhhhcccCC
Q 038309 102 AAALSGIVALTLLPST 117 (139)
Q Consensus 102 ~~liaail~~~i~p~~ 117 (139)
..++..++.+++.++|
T Consensus 203 ~~~~~~~~~~~l~~s~ 218 (479)
T PRK10077 203 PALLFLMLLYFVPETP 218 (479)
T ss_pred HHHHHHHHHHcCCCCc
Confidence 7777766555544433
No 27
>PRK12382 putative transporter; Provisional
Probab=95.19 E-value=0.058 Score=43.86 Aligned_cols=84 Identities=20% Similarity=0.182 Sum_probs=59.8
Q ss_pred HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309 27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS 106 (139)
Q Consensus 27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia 106 (139)
+...++.|+.++..+..=.+.+.+..++ +++|..+|++|.+..+-+.+.+...|.+.+.+| -..++.+.++..+++
T Consensus 306 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g--~~~~~~~~~~~~~~~ 381 (392)
T PRK12382 306 LAGAALTGAGCSLIFPALGVEVVKRVPS--QVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG--YPSVFLAGAISAVLG 381 (392)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chHHHHHHHHHHHHH
Confidence 4445556666665544323445556665 678999999999999999888888887666544 556788888888888
Q ss_pred HHHhhhcc
Q 038309 107 GIVALTLL 114 (139)
Q Consensus 107 ail~~~i~ 114 (139)
.++.++..
T Consensus 382 ~~~~~~~~ 389 (392)
T PRK12382 382 IIVTILSF 389 (392)
T ss_pred HHHHHhhc
Confidence 88777554
No 28
>TIGR00901 2A0125 AmpG-related permease.
Probab=95.15 E-value=0.15 Score=40.73 Aligned_cols=72 Identities=13% Similarity=-0.065 Sum_probs=53.5
Q ss_pred hHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCC------chhHHHHHHHHHHHHHHHhhhcccCCC
Q 038309 45 FAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGG------NMPAFMVGAVAAALSGIVALTLLPSTT 118 (139)
Q Consensus 45 yAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~------~~~A~v~ggv~~liaail~~~i~p~~~ 118 (139)
-+++++..++ ++.|..+|+......+-+++.+..++.+...++++ -...|.+++++.+++.+..+++.++++
T Consensus 105 ~a~~~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~ 182 (356)
T TIGR00901 105 DAWRLEILSD--EELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ 182 (356)
T ss_pred HHHHHHhCCH--hhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 3667788776 67899999998888888888887777766666543 455788888888887777676655543
No 29
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=95.09 E-value=0.085 Score=42.91 Aligned_cols=87 Identities=20% Similarity=0.123 Sum_probs=55.7
Q ss_pred HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHH
Q 038309 28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSG 107 (139)
Q Consensus 28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaa 107 (139)
+...+.|+..+......++++++..++ ++++..+|+.|....+-.++..+.++.+.+.+ +-...+.+.++..++..
T Consensus 96 ~~~~l~g~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~--g~~~~~~~~~~~~~i~~ 171 (392)
T PRK10473 96 AGRFLQGIGAGCCYVVAFAILRDTLDD--RRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF--PWQSLFYTMAAMGILVL 171 (392)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--ChHHHHHHHHHHHHHHH
Confidence 344567788887787888888888877 56788888888776555455454445443322 22345666666666666
Q ss_pred HHhhhcccCCC
Q 038309 108 IVALTLLPSTT 118 (139)
Q Consensus 108 il~~~i~p~~~ 118 (139)
+++++..|+++
T Consensus 172 ~~~~~~~~~~~ 182 (392)
T PRK10473 172 LLSLFILKETR 182 (392)
T ss_pred HHHHHHcCCCC
Confidence 66665555443
No 30
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=95.06 E-value=0.03 Score=46.33 Aligned_cols=89 Identities=15% Similarity=0.180 Sum_probs=61.7
Q ss_pred HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHH
Q 038309 28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSG 107 (139)
Q Consensus 28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaa 107 (139)
+...+.|+..+.....-++++++..++ +++|..+|+++....+-+.+....+|.+.+.++ -...+.+.++..+++.
T Consensus 95 ~~~~~~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~--w~~~f~~~~~~~~~~~ 170 (485)
T TIGR00711 95 IFRVIQGFGGGPLIPLSFSTLLNIYPP--EKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH--WRWIFLINVPIGIIVV 170 (485)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC--ceehhhhhhHHHHHHH
Confidence 344556777777777777888888887 578999999999988888877776666544332 3345666666666666
Q ss_pred HHhhhcccCCCCC
Q 038309 108 IVALTLLPSTTAD 120 (139)
Q Consensus 108 il~~~i~p~~~~~ 120 (139)
++.++..|+++++
T Consensus 171 ~~~~~~~~~~~~~ 183 (485)
T TIGR00711 171 VVAFFILPRDKPA 183 (485)
T ss_pred HHHHHHcCCcccc
Confidence 6666666654443
No 31
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=95.01 E-value=0.042 Score=42.65 Aligned_cols=75 Identities=19% Similarity=0.063 Sum_probs=56.8
Q ss_pred HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHH
Q 038309 29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSG 107 (139)
Q Consensus 29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaa 107 (139)
.+...|+.++..+++-.+++++..++ +++|..+|++|...-+-+.+.+...|.+.+.+| -...+.+.+++.+++.
T Consensus 301 ~~~~~g~~~g~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 301 TVALVFFTWGGTISLFPSLVSDIFGP--ANSAANYGFLYTAKAVAGIFGGLIASHALTEIG--FEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHhccchhccHHHHHHHhhh--hhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc--hhhHHHHHHHHHHHhc
Confidence 34556777777777666788888887 678999999999999999998888887665543 4457777777776654
No 32
>TIGR00895 2A0115 benzoate transport.
Probab=95.01 E-value=0.028 Score=44.15 Aligned_cols=87 Identities=20% Similarity=0.253 Sum_probs=61.0
Q ss_pred HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309 27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS 106 (139)
Q Consensus 27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia 106 (139)
++...+.|+.++..+..-++++++..++ +.+|..+|+.+....+-+++.++.+|.+.+.+| -...+.+.++..++.
T Consensus 109 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--~~~~~~~~~~~~~~~ 184 (398)
T TIGR00895 109 LILRFLAGLGLGGLMPNLNALVSEYAPK--RFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG--WRSLFYVGGIAPLLL 184 (398)
T ss_pred HHHHHHHhcccccchhhHHHHHHHHcCH--HhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc--ceeehhhhhhHHHHH
Confidence 3445677888888888888888988887 568999999999999988888877777655433 233455555555555
Q ss_pred HHHhhhcccCC
Q 038309 107 GIVALTLLPST 117 (139)
Q Consensus 107 ail~~~i~p~~ 117 (139)
.++.++..|++
T Consensus 185 ~~~~~~~~~~~ 195 (398)
T TIGR00895 185 LLLLMRFLPES 195 (398)
T ss_pred HHHHHHhCCCC
Confidence 55555545443
No 33
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=94.87 E-value=0.064 Score=44.78 Aligned_cols=72 Identities=7% Similarity=0.075 Sum_probs=48.9
Q ss_pred hHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCC--CchhHHHHHHHHHHHHHHHhhhcccCCC
Q 038309 45 FAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGG--GNMPAFMVGAVAAALSGIVALTLLPSTT 118 (139)
Q Consensus 45 yAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg--~~~~A~v~ggv~~liaail~~~i~p~~~ 118 (139)
.+++.+..|+ +.+|-++|+.|+..-+-+.+....+|.+.+..++ .....+.+.++..+++.+.......++|
T Consensus 319 ~~~~~~~~p~--~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (400)
T PRK11646 319 ETLSASLADA--RARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLALYWQFSQKR 392 (400)
T ss_pred HHHHHhcCCc--ccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHhhch
Confidence 4566667776 6799999999999999999998888887766442 2234555566666666655444333333
No 34
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=94.84 E-value=0.11 Score=41.48 Aligned_cols=88 Identities=17% Similarity=0.063 Sum_probs=62.0
Q ss_pred HHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhh---cchhhhcCCCchhHHHHHHHH
Q 038309 26 ALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLS---GPFDAVCGGGNMPAFMVGAVA 102 (139)
Q Consensus 26 al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~---G~~~~lfgg~~~~A~v~ggv~ 102 (139)
-++...+.|+..+..+..-++++++..++ +++|..+|++|....+-+++..+.+ +.+... .+-...+.+.++.
T Consensus 130 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~--~~w~~~f~~~~~~ 205 (481)
T TIGR00879 130 LIVGRVLLGIGVGIASALVPMYLSEIAPK--ALRGALTSLYQLAITFGILVAYGFGSGKVSLNNT--LGWRIPLGLQLIP 205 (481)
T ss_pred HHHHHHHHHhhhhHHHhHHHHHHHccCCh--hhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCC--ccHHHHHHHHHHH
Confidence 34455667777888888888888998887 6789999999999998888877755 332221 2334567777777
Q ss_pred HHHHHHHhhhcccCC
Q 038309 103 AALSGIVALTLLPST 117 (139)
Q Consensus 103 ~liaail~~~i~p~~ 117 (139)
.++..++.+++.++|
T Consensus 206 ~~~~~~~~~~l~~~~ 220 (481)
T TIGR00879 206 AGLLFLGLFFLPESP 220 (481)
T ss_pred HHHHHHHHhcCCCCh
Confidence 777666666665544
No 35
>PRK09528 lacY galactoside permease; Reviewed
Probab=94.81 E-value=0.16 Score=42.04 Aligned_cols=91 Identities=12% Similarity=0.103 Sum_probs=52.0
Q ss_pred chHHHHHhhchhHhhhhhccCCCCCceeeech-hhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhh
Q 038309 34 GIPQAITFSVPFAMASIFSRTSAAGQGLSLGV-LNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALT 112 (139)
Q Consensus 34 GIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGI-fN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~ 112 (139)
|+..+.....-++.+.+..++ +..+...++ +|++-.+..++.+...|.+.+.+| -..++.+.++..++..++.++
T Consensus 326 g~~~~~~~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G--~~~~f~~~~~~~~i~~~~~~~ 401 (420)
T PRK09528 326 AFEVPFLLVGVFKYITLNFDV--RLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG--FQGTYLILGGIVLLFTLISVF 401 (420)
T ss_pred HHHHHHHHHHHHHHHHHHcCc--cceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC--chHHHHHHHHHHHHHHHHHHH
Confidence 333333333334455566666 345544444 898888888888888888776665 445666555555555555554
Q ss_pred cccCCC--CCCCCCcccc
Q 038309 113 LLPSTT--ADVPPPITEA 128 (139)
Q Consensus 113 i~p~~~--~~~~~~~~~~ 128 (139)
..++++ .+-+|.++|+
T Consensus 402 ~~~~~~~~~~~~~~~~~~ 419 (420)
T PRK09528 402 TLSGDRELSLLRRQVPEA 419 (420)
T ss_pred HhcCCchhhHHHhhCccc
Confidence 433223 3445555553
No 36
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=94.78 E-value=0.068 Score=50.43 Aligned_cols=83 Identities=19% Similarity=0.297 Sum_probs=60.8
Q ss_pred HHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHH
Q 038309 30 FTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIV 109 (139)
Q Consensus 30 f~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail 109 (139)
++++|+..+...+..++++++..|. +.+|..+|+.|...-+-.++..+.+|.+... .....|++.++.+++++++
T Consensus 655 ~~l~g~~~~~~~~~~~a~~aEl~Pt--~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~---~~~~pf~i~a~~lll~~ll 729 (742)
T TIGR01299 655 LCLFGGLSIAAWNALDVLTVELYPS--DKRATAFGFLNALCKAAAVLGILIFGSFVGI---TKAAPILFASAALACGGLL 729 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHH
Confidence 4455665566667788889999998 5689999999999988888888777765443 2344566777788888888
Q ss_pred hhhcccCCC
Q 038309 110 ALTLLPSTT 118 (139)
Q Consensus 110 ~~~i~p~~~ 118 (139)
++++ |+.+
T Consensus 730 ~~~L-PET~ 737 (742)
T TIGR01299 730 ALKL-PDTR 737 (742)
T ss_pred HHhC-CCCc
Confidence 7765 5433
No 37
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=94.77 E-value=0.15 Score=40.83 Aligned_cols=86 Identities=17% Similarity=0.184 Sum_probs=56.8
Q ss_pred HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHH
Q 038309 28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSG 107 (139)
Q Consensus 28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaa 107 (139)
+...+.|+..+.....-.+++++..++ +++|..+|+.+....+-.++..+.++.+.+.++ -...+.+.++..++..
T Consensus 84 ~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~ 159 (377)
T PRK11102 84 YMRFLHGLAAAAASVVINALMRDMFPK--EEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS--WHAIFWVLALAAILAA 159 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHH
Confidence 344556776666666666777887776 568999999998887777777666665544332 3346666666666666
Q ss_pred HHhhhcccCC
Q 038309 108 IVALTLLPST 117 (139)
Q Consensus 108 il~~~i~p~~ 117 (139)
++.++..|+.
T Consensus 160 ~~~~~~~~~~ 169 (377)
T PRK11102 160 ALVFFFIPET 169 (377)
T ss_pred HHHHHhCCcc
Confidence 6665544443
No 38
>PRK10091 MFS transport protein AraJ; Provisional
Probab=94.77 E-value=0.085 Score=43.23 Aligned_cols=87 Identities=15% Similarity=0.056 Sum_probs=57.3
Q ss_pred HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHH
Q 038309 28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSG 107 (139)
Q Consensus 28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaa 107 (139)
+.....|+..+.......+++++..++ ++++..+|+++....+-+.+....++.+.+.+ +-..++.+.++..++..
T Consensus 96 ~~r~l~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~--gwr~~f~~~~~~~~~~~ 171 (382)
T PRK10091 96 IGRLVSGFPHGAFFGVGAIVLSKIIKP--GKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF--SWRYTFLLIAVFNIAVL 171 (382)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCh--HHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc--cHHHHHHHHHHHHHHHH
Confidence 344567777777666666777777776 56788899888877777766555455443332 34457777777777666
Q ss_pred HHhhhcccCCC
Q 038309 108 IVALTLLPSTT 118 (139)
Q Consensus 108 il~~~i~p~~~ 118 (139)
+..++..|+.+
T Consensus 172 ~~~~~~lp~~~ 182 (382)
T PRK10091 172 ASIYFWVPDIR 182 (382)
T ss_pred HHHHHhCCCCC
Confidence 66666566544
No 39
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=94.70 E-value=0.089 Score=45.17 Aligned_cols=93 Identities=14% Similarity=-0.017 Sum_probs=68.1
Q ss_pred HHHHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCC-------------
Q 038309 24 VGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGG------------- 90 (139)
Q Consensus 24 ~~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg------------- 90 (139)
...++...+.|+..+..+....+++++..|+ +.+|..+++.+.+..+-+++..+....+...+.+
T Consensus 116 ~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~--~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (502)
T TIGR00887 116 ATLCFWRFWLGVGIGGDYPLSAIITSEFATK--KWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTG 193 (502)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhcCh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 3455666788999999999999999999999 6789999999999988887776654443321211
Q ss_pred --------CchhHHHHHHHHHHHHHHHhhhcccCCC
Q 038309 91 --------GNMPAFMVGAVAAALSGIVALTLLPSTT 118 (139)
Q Consensus 91 --------~~~~A~v~ggv~~liaail~~~i~p~~~ 118 (139)
+=...+.++++..++..++.+++.++|+
T Consensus 194 ~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr 229 (502)
T TIGR00887 194 SCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPR 229 (502)
T ss_pred cccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 2233667788888777777666766665
No 40
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=94.59 E-value=0.073 Score=44.94 Aligned_cols=72 Identities=17% Similarity=0.082 Sum_probs=44.5
Q ss_pred hHhhhhhccCCCCCceeeechhhhhhhhHHHH-HHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccCCCCC
Q 038309 45 FAMASIFSRTSAAGQGLSLGVLNLAIVVPQML-VSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTAD 120 (139)
Q Consensus 45 yAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii-~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~~~~~ 120 (139)
++++.+..|+ +..|..+|++|.+-.+-..+ ....+|.+.+.+| ...+|.+.++..+++.++.+++.-.++++
T Consensus 369 ~~~~~~~~p~--~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 441 (452)
T PRK11273 369 GLHALELAPK--KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG--WDGGFMVMIGGSILAVILLIVVMIGEKRH 441 (452)
T ss_pred HHHHHHHcCh--hhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 3455567776 67899999998776554433 2444555555555 45566666667777777777444334443
No 41
>PRK10054 putative transporter; Provisional
Probab=94.54 E-value=0.1 Score=43.50 Aligned_cols=83 Identities=7% Similarity=-0.024 Sum_probs=52.5
Q ss_pred HHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHh
Q 038309 31 TVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVA 110 (139)
Q Consensus 31 ~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~ 110 (139)
.+.|..++.....=.+..++..++ +++|..+|+.+...-+-.++....++.+.+ + +-...|.+.+++.+++.+++
T Consensus 104 ~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~--g~~~~f~~~~~~~~i~~i~~ 178 (395)
T PRK10054 104 ALINCAYSVFSTVLKAWFADNLSS--TSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-Q--SINLPFWLAAICSAFPLVFI 178 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--ccCcHHHHHHHHHHHHHHHH
Confidence 344555444433334555566555 567888898888887777777666666543 3 34457777888888887776
Q ss_pred hhcccCCC
Q 038309 111 LTLLPSTT 118 (139)
Q Consensus 111 ~~i~p~~~ 118 (139)
.+..|+++
T Consensus 179 ~~~~~~~~ 186 (395)
T PRK10054 179 QIWVQRSE 186 (395)
T ss_pred HHHHhccc
Confidence 66555444
No 42
>PRK03893 putative sialic acid transporter; Provisional
Probab=94.20 E-value=0.18 Score=42.29 Aligned_cols=66 Identities=12% Similarity=0.055 Sum_probs=42.5
Q ss_pred HhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHH-HHHHHHHHHHHHHhhhccc
Q 038309 46 AMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAF-MVGAVAAALSGIVALTLLP 115 (139)
Q Consensus 46 Am~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~-v~ggv~~liaail~~~i~p 115 (139)
+++++..++ +++|..+|+++.+..+-+.+..+.+|.+.+.+|-+ .++ ..+++..+++.++..+..|
T Consensus 389 ~~~~~~~~~--~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~ 455 (496)
T PRK03893 389 KLIGGYFDT--EQRAAGLGFTYNVGALGGALAPILGALIAQRLDLG--TALASLSFSLTFVVILLIGLDMP 455 (496)
T ss_pred HHHHhhCCH--HHhhcccchhhhhhhHHHHHHHHHHHHHhccCChH--HHHHHHHHHHHHHHHHHHHhcCc
Confidence 556677776 57899999999999988888888888776655533 233 3333344444444434333
No 43
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=94.20 E-value=0.086 Score=41.20 Aligned_cols=83 Identities=13% Similarity=0.085 Sum_probs=52.7
Q ss_pred HHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCC------chhHHHHHHHHH
Q 038309 30 FTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGG------NMPAFMVGAVAA 103 (139)
Q Consensus 30 f~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~------~~~A~v~ggv~~ 103 (139)
-.+.|+..+...+.-.+++++..++ +++|.++++.+....+-+++..+.++.+...++++ -...+.+.++..
T Consensus 103 r~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 180 (394)
T TIGR00883 103 RLIQGFSLGGEWGGAALYLAEYAPP--GKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLV 180 (394)
T ss_pred HHHHHhhccccccccHHHhhhcCCc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHH
Confidence 3556666666666666778888777 67899999999888888777776555544433322 234555666665
Q ss_pred HHHHHHhhhcc
Q 038309 104 ALSGIVALTLL 114 (139)
Q Consensus 104 liaail~~~i~ 114 (139)
+++-++...+.
T Consensus 181 ~~~~~~~~~~~ 191 (394)
T TIGR00883 181 LIGLYLRRNLE 191 (394)
T ss_pred HHHHHHHHhcC
Confidence 55544433333
No 44
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=94.15 E-value=0.2 Score=39.59 Aligned_cols=71 Identities=20% Similarity=0.196 Sum_probs=42.4
Q ss_pred HhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccCCC
Q 038309 46 AMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTT 118 (139)
Q Consensus 46 Am~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~~~ 118 (139)
++.....++++++.+.++|+.+....+-+++....++.+.+.+ +-...+.+.++..++..++.++..|+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~--~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T TIGR00899 110 ALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF--GFTVMFLTAALAFVLCGVLVWLFLPSYP 180 (375)
T ss_pred HHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4445555554333334467766666666666555555554433 3446777888888888887776555543
No 45
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=94.14 E-value=0.24 Score=46.12 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=44.7
Q ss_pred HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhh
Q 038309 27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAV 87 (139)
Q Consensus 27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~l 87 (139)
+++.++.|+.-+.....-+++++...++ ++.|..+|+.+....+=.++..+.+|.+...
T Consensus 107 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 107 FAVTFLLGAQSAIYSPAKYGIIPELVGK--ENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHHHHHHHHhhchHHHhhhHHhcCc--ccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344556776666666667888899887 6789999999999888888877777776554
No 46
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=94.13 E-value=0.12 Score=41.93 Aligned_cols=87 Identities=16% Similarity=0.134 Sum_probs=57.3
Q ss_pred HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309 27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS 106 (139)
Q Consensus 27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia 106 (139)
++...+.|+..+.......+++++..++ ++.|..+|+++....+-..+..+.++.+.+.+ +-...+.+.++..++.
T Consensus 107 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 182 (406)
T PRK11551 107 LVARLLTGVGLGGALPNLIALTSEAVGP--RLRGTAVSLMYCGVPFGGALASVIGVLAAGDA--AWRHIFYVGGVGPLLL 182 (406)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CHHHHHHHHHHHHHHH
Confidence 4455667887777777778888888877 57899999999888777776665544433322 2234566666666666
Q ss_pred HHHhhhcccCC
Q 038309 107 GIVALTLLPST 117 (139)
Q Consensus 107 ail~~~i~p~~ 117 (139)
.++.++..|++
T Consensus 183 ~~~~~~~l~~~ 193 (406)
T PRK11551 183 VPLLMRWLPES 193 (406)
T ss_pred HHHHHHhCCCC
Confidence 65555544443
No 47
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=94.07 E-value=0.17 Score=42.52 Aligned_cols=83 Identities=16% Similarity=0.071 Sum_probs=50.1
Q ss_pred HhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhh
Q 038309 32 VLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVAL 111 (139)
Q Consensus 32 ~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~ 111 (139)
+.|+..+..+....+.+++..|+ +++|..+|+.|...-+=.++.....+.+.... .+-..+|.+.+++.++.+++.+
T Consensus 127 l~g~~~g~~~~~~~~~i~~~~~~--~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~-~~w~~~f~~~~~~~~i~~~~~~ 203 (438)
T TIGR00712 127 LNGWFQGMGWPPCGRTMVHWWSQ--SERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF-NDWHAALYFPAICAIIVALFAF 203 (438)
T ss_pred HHHHHhhcchHHHHHHHHHhcCc--ccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHH
Confidence 34554444444445566666776 67999999999887666555543333222211 2234578887887777776666
Q ss_pred hcccCC
Q 038309 112 TLLPST 117 (139)
Q Consensus 112 ~i~p~~ 117 (139)
++.|++
T Consensus 204 ~~~~~~ 209 (438)
T TIGR00712 204 AMMRDT 209 (438)
T ss_pred HhccCC
Confidence 555443
No 48
>PRK11663 regulatory protein UhpC; Provisional
Probab=94.04 E-value=0.13 Score=43.16 Aligned_cols=64 Identities=20% Similarity=0.206 Sum_probs=46.7
Q ss_pred hhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcc
Q 038309 47 MASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLL 114 (139)
Q Consensus 47 m~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~ 114 (139)
.+++..++ +..|..+|+.|.+.-+-+.+.....|.+.+.+| -..++.+.+++++++++.+++..
T Consensus 361 ~~~~~~~~--~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~~ 424 (434)
T PRK11663 361 AAAECSHK--EAAGAATGFVGLFAYLGAALSGYPLAKVLEIWH--WTGFFVVISIAAGISALLLLPFL 424 (434)
T ss_pred HHHhcccH--hhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34454444 578999999999999988888777777666654 55677777777777777666544
No 49
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=93.97 E-value=0.2 Score=42.15 Aligned_cols=86 Identities=12% Similarity=0.074 Sum_probs=55.7
Q ss_pred HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHH
Q 038309 29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGI 108 (139)
Q Consensus 29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaai 108 (139)
.-.+.|+.-+....+.|+++.+..++ ++.+-.+|+++...-+-..+..+.++.+.+.+ +-...|.+-++..+++.+
T Consensus 110 ~r~l~Gi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~--gw~~~f~~~~~~~~i~~~ 185 (413)
T PRK15403 110 ARFIQGTSICFIATVGYVTVQEAFGQ--TKGIKLMAIITSIVLVAPIIGPLSGAALMHFV--HWKVLFAIIAVMGLIAFV 185 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHH
Confidence 33455666555556667777777666 45677788888887777777666666655443 234567777777777777
Q ss_pred HhhhcccCCC
Q 038309 109 VALTLLPSTT 118 (139)
Q Consensus 109 l~~~i~p~~~ 118 (139)
+.++..|+.+
T Consensus 186 ~~~~~lp~~~ 195 (413)
T PRK15403 186 GLLLAMPETV 195 (413)
T ss_pred HHHHhCCCCc
Confidence 6665556544
No 50
>TIGR00898 2A0119 cation transport protein.
Probab=93.87 E-value=0.1 Score=44.02 Aligned_cols=84 Identities=8% Similarity=0.028 Sum_probs=60.5
Q ss_pred HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309 27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS 106 (139)
Q Consensus 27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia 106 (139)
++...+.|+..+..+...++++++..++ +++|..+++.+++..+-.++..+.++.+.+ -...+.+.++..++.
T Consensus 184 ~~~r~l~G~~~~~~~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-----wr~~~~~~~i~~~~~ 256 (505)
T TIGR00898 184 LVFRLLVGMGIGGIWVQAVVLNTEFLPK--KQRAIVGTLIQVFFSLGLVLLPLVAYFIPD-----WRWLQLAVSLPTFLF 256 (505)
T ss_pred HHHHHHHHhhccchHHHHHHHhheecCh--hhhHHHHHHHHHHHHHHHHHHHHHHHHhhH-----HHHHHHHHHHHHHHH
Confidence 4456678888899999999999999988 578888998888887777766654444322 234566677777777
Q ss_pred HHHhhhcccCC
Q 038309 107 GIVALTLLPST 117 (139)
Q Consensus 107 ail~~~i~p~~ 117 (139)
.++.+++.++|
T Consensus 257 ~~~~~~~~esp 267 (505)
T TIGR00898 257 FLLSWFVPESP 267 (505)
T ss_pred HHHHHhcCCCh
Confidence 77776655544
No 51
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=93.66 E-value=0.22 Score=40.50 Aligned_cols=86 Identities=15% Similarity=0.207 Sum_probs=53.3
Q ss_pred HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHH
Q 038309 28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSG 107 (139)
Q Consensus 28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaa 107 (139)
+.....|+.++....+..++.....++ ++.+..+++.|+...+-+++....++.+.+.++ -..++.+.++..++..
T Consensus 101 ~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g--~~~~f~~~~~~~~~~~ 176 (394)
T PRK11652 101 AASAIQGLGTGVGGVMARTLPRDLYEG--TQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG--WRACYLFLLLLGAGVT 176 (394)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHH
Confidence 344556777776666666666666665 567888888888887777666665665544332 3445666666665555
Q ss_pred HHhhhcccCC
Q 038309 108 IVALTLLPST 117 (139)
Q Consensus 108 il~~~i~p~~ 117 (139)
++..+..|++
T Consensus 177 ~~~~~~~~~~ 186 (394)
T PRK11652 177 FSMARWMPET 186 (394)
T ss_pred HHHHHhCCcc
Confidence 5554444443
No 52
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=93.63 E-value=0.3 Score=37.96 Aligned_cols=84 Identities=14% Similarity=0.180 Sum_probs=46.7
Q ss_pred HHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHH
Q 038309 30 FTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIV 109 (139)
Q Consensus 30 f~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail 109 (139)
..+.|+..+..+......+.+..+ +++|..+|+++...-+-.++.....+.+.+. .+-...+.+.++..++..++
T Consensus 98 ~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~f~~~~~~~~~~~~~ 172 (377)
T TIGR00890 98 YGLASAGVGIAYGIALNTAVKWFP---DKRGLASGIIIGGYGLGSFILSPLITSVINL--EGVPAAFIYMGIIFLLVIVL 172 (377)
T ss_pred HHHHhHHHHHHHHhHHHHHHHHcC---cccHHHHHHHHHhcchhHhHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHH
Confidence 335666666655444454555544 3588899998887666554432222222111 12344667777777777666
Q ss_pred hhhcccCCC
Q 038309 110 ALTLLPSTT 118 (139)
Q Consensus 110 ~~~i~p~~~ 118 (139)
.++..++++
T Consensus 173 ~~~~~~~~~ 181 (377)
T TIGR00890 173 GAFLIGYPP 181 (377)
T ss_pred HHHheecCc
Confidence 665544443
No 53
>TIGR00898 2A0119 cation transport protein.
Probab=93.60 E-value=0.23 Score=41.95 Aligned_cols=78 Identities=17% Similarity=0.146 Sum_probs=52.3
Q ss_pred HHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHH
Q 038309 30 FTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIV 109 (139)
Q Consensus 30 f~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail 109 (139)
+.+.++.....+.+.|+++++..|. +.++..+|+.|.+-.+-+++.....+ .++. +....+.+-+++.++++++
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~---~~~~~~~~~~~~~~~~~~~ 490 (505)
T TIGR00898 417 AVLGKFGITSAFQMVYLYTAELYPT--VVRNLGVGVCSTMARVGSIISPFLVY-LGEK---WLFLPLVLFGGLALLAGIL 490 (505)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccH--HHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH---HHhhHHHHHHHHHHHHHHH
Confidence 3334444455566777888888887 56788899999998888888777655 4432 2334555566666666776
Q ss_pred hhhc
Q 038309 110 ALTL 113 (139)
Q Consensus 110 ~~~i 113 (139)
++++
T Consensus 491 ~~~l 494 (505)
T TIGR00898 491 TLFL 494 (505)
T ss_pred HHcC
Confidence 6654
No 54
>PRK10504 putative transporter; Provisional
Probab=93.56 E-value=0.16 Score=42.42 Aligned_cols=90 Identities=17% Similarity=0.146 Sum_probs=63.4
Q ss_pred HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309 27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS 106 (139)
Q Consensus 27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia 106 (139)
++..++.|+..+.....-++++++..++ ++++..+|+.+...-+-..+....+|.+.+.+ +-..+|.+...+.+++
T Consensus 102 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~--gw~~~f~~~~~~~~l~ 177 (471)
T PRK10504 102 LLARVLQGVGGAMMVPVGRLTVMKIVPR--EQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA--SWHWIFLINIPVGIIG 177 (471)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc--cHHHHHHHHHHHHHHH
Confidence 3445677777777777777888888887 56788899998877777777666666655443 2345777777777777
Q ss_pred HHHhhhcccCCCCC
Q 038309 107 GIVALTLLPSTTAD 120 (139)
Q Consensus 107 ail~~~i~p~~~~~ 120 (139)
.++.....|+.+.+
T Consensus 178 ~~~~~~~~~~~~~~ 191 (471)
T PRK10504 178 AIATLMLMPNYTMQ 191 (471)
T ss_pred HHHHHHhCCCcccc
Confidence 77777776665433
No 55
>PRK15011 sugar efflux transporter B; Provisional
Probab=93.43 E-value=0.31 Score=40.18 Aligned_cols=68 Identities=13% Similarity=0.141 Sum_probs=42.3
Q ss_pred hhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccCCC
Q 038309 49 SIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTT 118 (139)
Q Consensus 49 s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~~~ 118 (139)
....+++++..+.|+|++|...-+=.++....++.+.+.+| -..+|.+.++..++.++++++..|+.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g--w~~~f~~~~~~~~~~~~~~~~~~~~~~ 198 (393)
T PRK15011 131 REHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFS--FTVMYLSAAVAFIVCGVMVWLFLPSMR 198 (393)
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence 33344433334677788888877777777766666554442 335677777777777777666555543
No 56
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=93.43 E-value=0.33 Score=40.14 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=44.3
Q ss_pred CCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcc
Q 038309 57 AGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLL 114 (139)
Q Consensus 57 ~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~ 114 (139)
+++|..+|+.|...-+-+.+.....|.+.+.+| -...+.+.+++.++++++..+++
T Consensus 346 ~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g--~~~~~~~~a~~~~i~~~~~~~~~ 401 (402)
T TIGR00897 346 KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG--AIGVVWIFAALYVVSAFLTAFIR 401 (402)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHHHHHHhc
Confidence 468999999999999999999888888777654 44566677777888887777653
No 57
>PRK11663 regulatory protein UhpC; Provisional
Probab=93.35 E-value=0.22 Score=41.85 Aligned_cols=82 Identities=17% Similarity=0.175 Sum_probs=50.8
Q ss_pred HhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhh
Q 038309 32 VLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVAL 111 (139)
Q Consensus 32 ~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~ 111 (139)
+.|+..+..+..-.+++++..++ +++|..||++|...-+-.++..+..+.+.+.+| -...+.+.++..++.+++..
T Consensus 120 l~g~~~g~~~~~~~~~~~~~~~~--~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--w~~~f~~~~i~~~~~~~~~~ 195 (434)
T PRK11663 120 LNAFFQGWGWPVCAKLLTAWYSR--TERGGWWAIWNTAHNVGGALIPLVVGAIALHYG--WRYGMMIAGIIAIVVGLFLC 195 (434)
T ss_pred HHHHHHHccchHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHHHHH
Confidence 34555554444556777777776 578999999998887777776666666554433 34456665655554444444
Q ss_pred -hcccCC
Q 038309 112 -TLLPST 117 (139)
Q Consensus 112 -~i~p~~ 117 (139)
+++++|
T Consensus 196 ~~~~~~p 202 (434)
T PRK11663 196 WRLRDKP 202 (434)
T ss_pred HHcCCCH
Confidence 444443
No 58
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=93.32 E-value=0.21 Score=41.58 Aligned_cols=84 Identities=14% Similarity=0.180 Sum_probs=57.2
Q ss_pred HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHH
Q 038309 29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGI 108 (139)
Q Consensus 29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaai 108 (139)
...+.|+.-|..+..-.+++.+..|+ ++.+-.+|+++....+-+++-...+|.+.+.. -...+.+.+.+.+++.+
T Consensus 94 ~r~l~G~~~a~~~pa~~a~i~~~~~~--~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~---~~~~~~i~~~~~~~~~~ 168 (393)
T PRK11195 94 AYGLVGIGAAAYSPAKYGILTELLPG--EKLVKANGWMEGSTIAAILLGTVLGGALADPH---AEAALAVCALIYLLAAL 168 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 34567888888888888999999998 67999999999888888888877788766543 22233333333444443
Q ss_pred HhhhcccCCC
Q 038309 109 VALTLLPSTT 118 (139)
Q Consensus 109 l~~~i~p~~~ 118 (139)
+ .+..|+++
T Consensus 169 ~-~~~l~~~~ 177 (393)
T PRK11195 169 F-NLFIPRLG 177 (393)
T ss_pred H-HhcCCCCc
Confidence 3 34445433
No 59
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=93.30 E-value=0.14 Score=42.93 Aligned_cols=84 Identities=12% Similarity=0.118 Sum_probs=57.6
Q ss_pred HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHH
Q 038309 29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGI 108 (139)
Q Consensus 29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaai 108 (139)
.-.+.|+..+.....-.+++++..|+ +++|.++|+++....+-+++....++.+.+.+. +-...|.+.++..++..+
T Consensus 137 ~r~~~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~-gw~~~f~i~~~~~~~~~~ 213 (465)
T TIGR00894 137 CRVIQGLAQGSVSPATHKIIVKWAPP--KERSRLLGMSTSGFQLGTFIFLPISGWLCESWG-GWPMIFYVFGIVGCAWSL 213 (465)
T ss_pred HHHHHHHhcccchhhHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCeehhhhhHHHHHHHH
Confidence 34556777777766666777888877 578999999999988888887776666544321 223466666777666666
Q ss_pred Hhhhccc
Q 038309 109 VALTLLP 115 (139)
Q Consensus 109 l~~~i~p 115 (139)
++++..+
T Consensus 214 ~~~~~~~ 220 (465)
T TIGR00894 214 LWFVFPA 220 (465)
T ss_pred HHHHHhc
Confidence 6665443
No 60
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=93.16 E-value=0.24 Score=41.50 Aligned_cols=87 Identities=16% Similarity=0.160 Sum_probs=58.5
Q ss_pred HHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhh---cC-CCchhHHHHHHHHHHH
Q 038309 30 FTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAV---CG-GGNMPAFMVGAVAAAL 105 (139)
Q Consensus 30 f~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~l---fg-g~~~~A~v~ggv~~li 105 (139)
-.+.|+..+..+..-.+++++..++ +++|..+|+++...-+-+++..+.++.+... .+ -+-..+|.+.++..++
T Consensus 103 r~l~G~~~~~~~~~~~~~~~~~~~~--~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~ 180 (412)
T TIGR02332 103 RILVGIAEAGFLPGILLYLTFWFPA--YFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVI 180 (412)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHH
Confidence 3456777777666566777888887 5789999999998888888777766654321 11 1345677777777766
Q ss_pred HHHHhhhcccCCC
Q 038309 106 SGIVALTLLPSTT 118 (139)
Q Consensus 106 aail~~~i~p~~~ 118 (139)
.+++.++..|+++
T Consensus 181 ~~~~~~~~~~~~p 193 (412)
T TIGR02332 181 LGVMTWFWLDDSP 193 (412)
T ss_pred HHHHHhhccCCCc
Confidence 6666655544433
No 61
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=93.12 E-value=0.4 Score=39.97 Aligned_cols=84 Identities=17% Similarity=0.154 Sum_probs=56.2
Q ss_pred HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHH
Q 038309 29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGI 108 (139)
Q Consensus 29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaai 108 (139)
.-.+.|+..+.......+++++..++ ++.|..+|+++...-+-.++....++.+.+.++ -..++.+.++..++..+
T Consensus 114 ~r~l~G~~~g~~~~~~~~~i~~~~~~--~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g--w~~~f~~~~~l~~~~~l 189 (394)
T PRK10213 114 GRACLGLALGGFWAMSASLTMRLVPP--RTVPKALSVIFGAVSIALVIAAPLGSFLGELIG--WRNVFNAAAVMGVLCIF 189 (394)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHcCH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHH
Confidence 34567888888877788888888887 678889999988887777777776776655554 23455555555544444
Q ss_pred HhhhcccC
Q 038309 109 VALTLLPS 116 (139)
Q Consensus 109 l~~~i~p~ 116 (139)
+.++..|+
T Consensus 190 ~~~~~~p~ 197 (394)
T PRK10213 190 WIIKSLPS 197 (394)
T ss_pred HHHHHCCC
Confidence 43333343
No 62
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=93.00 E-value=0.29 Score=37.41 Aligned_cols=83 Identities=20% Similarity=0.260 Sum_probs=61.8
Q ss_pred HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309 27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS 106 (139)
Q Consensus 27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia 106 (139)
++.....|+..+.....-.+++++..++ ++++..+|+.+....+-+++....++.+.+.++ ....+.+.++..+++
T Consensus 91 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 166 (352)
T cd06174 91 LVGRFLLGLGGGALYPAAAALIAEWFPP--KERGRALGLFSAGFGLGALLGPLLGGLLAESLG--WRWLFLILAILGLLL 166 (352)
T ss_pred HHHHHHHHcccccccHhHHHHHHHhCCc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHH
Confidence 3445556777777777777888888887 678999999999999999998887777665533 445677777777777
Q ss_pred HHHhhhc
Q 038309 107 GIVALTL 113 (139)
Q Consensus 107 ail~~~i 113 (139)
.++..+.
T Consensus 167 ~~~~~~~ 173 (352)
T cd06174 167 ALLLLFL 173 (352)
T ss_pred HHHHHHH
Confidence 7766544
No 63
>PRK09528 lacY galactoside permease; Reviewed
Probab=92.96 E-value=0.22 Score=41.20 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=42.3
Q ss_pred CCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccCCC
Q 038309 57 AGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTT 118 (139)
Q Consensus 57 ~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~~~ 118 (139)
+++|..+|..+....+-+.+..+.+|.+.+. +....+.+.++..+++.++.++++++++
T Consensus 137 ~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~---~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 195 (420)
T PRK09528 137 RRSGFEYGRARMWGSLGWALCAFIAGILFNI---NPQINFWLGSGSALILLVLLFFAKPDAP 195 (420)
T ss_pred hhccccchhhHHhhhHHHHHHHHHHHHHHhc---CchHhHHHHHHHHHHHHHHHhccccccc
Confidence 5678899999999888888887777765432 3345677777777777777776665544
No 64
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=92.92 E-value=0.33 Score=40.36 Aligned_cols=86 Identities=17% Similarity=0.171 Sum_probs=53.7
Q ss_pred HHHhchHHHHHh-hchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchh------hhcCCCchhHHHHHHHH
Q 038309 30 FTVLGIPQAITF-SVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFD------AVCGGGNMPAFMVGAVA 102 (139)
Q Consensus 30 f~~lGIpwAs~l-SmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~------~lfgg~~~~A~v~ggv~ 102 (139)
+...++.++..+ .+.++++++..|. +.+|..+|+.+..--+-+++.+...+... +-+ +...++.+.++.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~ 445 (479)
T PRK10077 370 MLFYVAAFAMSWGPVCWVLLSEIFPN--AIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHF--HNGFSYWIYGCM 445 (479)
T ss_pred HHHHHHHHhccccchhHHHhHhhCCh--hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhc--cCccHHHHHHHH
Confidence 334444444332 4567888888887 57899999988876667666654443322 222 224566666777
Q ss_pred HHHHHHHhhhcccCCCC
Q 038309 103 AALSGIVALTLLPSTTA 119 (139)
Q Consensus 103 ~liaail~~~i~p~~~~ 119 (139)
.++++++.++..|+++.
T Consensus 446 ~~~~~~~~~~~~~e~~~ 462 (479)
T PRK10077 446 GVLAALFMWKFVPETKG 462 (479)
T ss_pred HHHHHHHHHhccccCCC
Confidence 77777777766665543
No 65
>PRK15011 sugar efflux transporter B; Provisional
Probab=92.89 E-value=0.54 Score=38.78 Aligned_cols=61 Identities=11% Similarity=0.074 Sum_probs=43.5
Q ss_pred hhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhc
Q 038309 48 ASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTL 113 (139)
Q Consensus 48 ~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i 113 (139)
..+..| ++.|.++|++|.+.-+-+.+.++.+|.+.+.+| -...+.+++++.+++.++.+++
T Consensus 330 ~~~~~p---~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g--~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK15011 330 FQDLMP---GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN--YHAVFWFALVMIIATLFCLLRI 390 (393)
T ss_pred HHHhCC---CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhh
Confidence 344444 358999999999888888898888888766553 3345566777777766666655
No 66
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=92.84 E-value=0.17 Score=47.88 Aligned_cols=89 Identities=12% Similarity=0.038 Sum_probs=60.2
Q ss_pred HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcC-----------CCchhH
Q 038309 27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCG-----------GGNMPA 95 (139)
Q Consensus 27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfg-----------g~~~~A 95 (139)
++.-.+.|+..+..+.+.++++++..|. +.+|..+|+++.+..+-.++..+.++.+...+| .+=...
T Consensus 259 lv~R~l~G~g~g~~~p~~~~~isE~~p~--~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l 336 (742)
T TIGR01299 259 LFCRLLSGFGIGGAIPIVFSYFAEFLAQ--EKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVF 336 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHH
Confidence 3345677888899999999999999998 679999999999988877776654333222111 011345
Q ss_pred HHHHHHHHHHHHHHhhhcccCC
Q 038309 96 FMVGAVAAALSGIVALTLLPST 117 (139)
Q Consensus 96 ~v~ggv~~liaail~~~i~p~~ 117 (139)
+.++++..+++.++.+++.+.|
T Consensus 337 ~~i~~lp~ll~ll~~~~lPESP 358 (742)
T TIGR01299 337 VIVCAFPCVFAIGALTFMPESP 358 (742)
T ss_pred HHHHHHHHHHHHHHHHHcCCCH
Confidence 6667777666655555554444
No 67
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=92.82 E-value=0.09 Score=40.79 Aligned_cols=63 Identities=13% Similarity=-0.004 Sum_probs=52.4
Q ss_pred HHHHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhc
Q 038309 24 VGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVC 88 (139)
Q Consensus 24 ~~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lf 88 (139)
...++.+.+.|+.++.......+++.+..|+ +.+|..+|+.|....+.+.+.+..+|.+.+.+
T Consensus 302 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~ 364 (365)
T TIGR00900 302 PLFLVLWFAIGVGYGPINVPQGTLLQRRVPA--ELLGRVFGAQFSLSHAAWPLGLILAGPLADHL 364 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455667788888888888888999999887 57899999999999999999988888766544
No 68
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=92.79 E-value=0.47 Score=44.76 Aligned_cols=57 Identities=11% Similarity=0.043 Sum_probs=43.7
Q ss_pred HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhh
Q 038309 28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDA 86 (139)
Q Consensus 28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~ 86 (139)
+.++++|+..+..+..-++++...+++ +.+|-.+|++|++..+-+.+.++.+|.+..
T Consensus 339 ~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 339 IDLFGLAAAGGLYIVPLFAALQAWANP--AHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhCCc--ccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777666677888888888 679999999999988877777776666543
No 69
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=92.65 E-value=0.38 Score=40.40 Aligned_cols=83 Identities=19% Similarity=0.167 Sum_probs=55.4
Q ss_pred HHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHh
Q 038309 31 TVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVA 110 (139)
Q Consensus 31 ~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~ 110 (139)
.+.|+.-+. +...++.+++..|+ +++|..+|+++....+-.++..+.++++.+.+ +=..+|.+.++..++..+++
T Consensus 87 ~l~G~g~~~-~~~~~~~~~~~~~~--~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~--gWr~~f~~~~~l~~~~~~~~ 161 (368)
T TIGR00903 87 LLAALGQPF-LLNAFAPAASQIRE--ERRDLVISLLSFAMYLGIIFALAAGLKIYTAG--GLQLLIIPIAAVAAAGIILV 161 (368)
T ss_pred HHHHhHhHH-HHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--chHHHHHHHHHHHHHHHHHH
Confidence 344555553 33444556788887 68999999999999999999887777766543 33456666555555556666
Q ss_pred hhcccCCC
Q 038309 111 LTLLPSTT 118 (139)
Q Consensus 111 ~~i~p~~~ 118 (139)
++..|+++
T Consensus 162 ~~~lp~~p 169 (368)
T TIGR00903 162 LAALPALP 169 (368)
T ss_pred HHHcCCCC
Confidence 65555443
No 70
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=92.64 E-value=0.44 Score=38.39 Aligned_cols=67 Identities=24% Similarity=0.272 Sum_probs=46.1
Q ss_pred HhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccC
Q 038309 46 AMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPS 116 (139)
Q Consensus 46 Am~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~ 116 (139)
+++....++ +++|..+|+.+....+-+++....+|.+.+.++ -..++.+.++..+++.++.++..++
T Consensus 129 ~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (408)
T PRK09874 129 ALIATQVPR--NKSGWALGTLSTGGVSGALLGPLAGGLLADSYG--LRPVFFITASVLFLCFLVTLFCIRE 195 (408)
T ss_pred HHHHHhcCH--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445556665 567889999998888888777776666555433 4456777777777777776655544
No 71
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=92.55 E-value=0.4 Score=40.19 Aligned_cols=75 Identities=16% Similarity=0.151 Sum_probs=53.2
Q ss_pred HHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcC------CCchhHHHHHHHHHH
Q 038309 31 TVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCG------GGNMPAFMVGAVAAA 104 (139)
Q Consensus 31 ~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfg------g~~~~A~v~ggv~~l 104 (139)
.+.|+..+..+....+++++..|+ +++|.++++.+....+-.++..+....+..+++ -+=...|.++++..+
T Consensus 132 ~l~G~g~g~~~~~~~~~i~e~~p~--~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~l 209 (432)
T PRK10406 132 LFQGLSVGGEYGTSATYMSEVAVE--GRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAV 209 (432)
T ss_pred HHHHhhhhhhHhhHHHHHHHhCCC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHH
Confidence 467888888888888999999988 678999999888877777766654444433332 233557777777776
Q ss_pred HHH
Q 038309 105 LSG 107 (139)
Q Consensus 105 iaa 107 (139)
+..
T Consensus 210 l~~ 212 (432)
T PRK10406 210 VAL 212 (432)
T ss_pred HHH
Confidence 653
No 72
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=92.22 E-value=0.55 Score=37.17 Aligned_cols=54 Identities=19% Similarity=0.171 Sum_probs=31.9
Q ss_pred HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchh
Q 038309 29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFD 85 (139)
Q Consensus 29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~ 85 (139)
...+.|+..+ .+..-.++++...++ +++|..+|+.+.+..+-..+..+.++++.
T Consensus 97 ~~~~~g~~~~-~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~i~~~l~ 150 (366)
T TIGR00886 97 LRLFIGIAGG-SFASCMPWISFFFPK--KIQGTALGLAAGWGNMGGGVAQFVMPPII 150 (366)
T ss_pred HHHHHHHhch-hhHhHHHHHHHhcCH--hhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3444566543 334445667777776 56788888887665555555554444443
No 73
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=92.20 E-value=0.27 Score=44.96 Aligned_cols=84 Identities=17% Similarity=0.169 Sum_probs=61.3
Q ss_pred HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCC----------------
Q 038309 28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGG---------------- 91 (139)
Q Consensus 28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~---------------- 91 (139)
+.-++.|+.-+..+.+-.+++.+..++ ++.+.|+|+++....+-..+..+.+|.+.+.+.+-
T Consensus 177 ~~r~l~GiG~~~~~~~~~~~i~d~~~~--~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dpr 254 (633)
T TIGR00805 177 VSQLLRGIGATPIFPLGISYIDDFAKS--KNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPR 254 (633)
T ss_pred HHHHHHhccCCcchhcCchhhhccCCc--cccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCcc
Confidence 445677777777777777888999988 68999999999999998888877777766554320
Q ss_pred ---c-hhHHHHHHHHHHHHHHHhhhc
Q 038309 92 ---N-MPAFMVGAVAAALSGIVALTL 113 (139)
Q Consensus 92 ---~-~~A~v~ggv~~liaail~~~i 113 (139)
. ...|++.|+..++.++..+++
T Consensus 255 WiGaWwl~Fli~g~l~~l~~v~l~~~ 280 (633)
T TIGR00805 255 WIGAWWIGFLICGGVALLTSIPFFFF 280 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 0 124777777777777654433
No 74
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=92.07 E-value=0.49 Score=44.09 Aligned_cols=82 Identities=18% Similarity=0.205 Sum_probs=50.3
Q ss_pred HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309 27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS 106 (139)
Q Consensus 27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia 106 (139)
++.+.++|+..+.....-++++....++ +.+|..+|+.|++-.+-.++..+.++.+.. ++-+....+.+.+...++.
T Consensus 326 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~ 402 (1146)
T PRK08633 326 LVLFFLFGFSAGLFIVPLNALIQFRAPE--KELGKVLAANNFLQNVGMLLFLALTTLFSG-LGLSPAGLFYLIALVTLIG 402 (1146)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhcCCc--cchhhhhHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHH
Confidence 3444555665555555556777777777 578999999998887777666555555444 3334444555555555554
Q ss_pred HHHhh
Q 038309 107 GIVAL 111 (139)
Q Consensus 107 ail~~ 111 (139)
.++.+
T Consensus 403 ~~~~~ 407 (1146)
T PRK08633 403 TLYTL 407 (1146)
T ss_pred HHHHH
Confidence 44443
No 75
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=92.05 E-value=0.55 Score=41.89 Aligned_cols=85 Identities=14% Similarity=0.091 Sum_probs=65.2
Q ss_pred HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHH
Q 038309 29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGI 108 (139)
Q Consensus 29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaai 108 (139)
+-.++|+..+.+.|.-=+|.+..+|+ ++.+-+.|+++++=-.--++-.+..|.+.+.+| +..+++..=.++++++.+
T Consensus 386 ~a~~~G~~~G~~qs~sRs~~~~LiP~--g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg-~~r~g~~~l~~lf~~gl~ 462 (477)
T PF11700_consen 386 LAVLIGLFMGGIQSASRSLFSRLIPP--GREAEFFGLYAITGKASSWLGPLLFGLITDATG-SQRYGFLFLLVLFLIGLI 462 (477)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhCCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHH
Confidence 34467788888888888999999999 789999999999887777777777788788875 455666666677777766
Q ss_pred HhhhcccC
Q 038309 109 VALTLLPS 116 (139)
Q Consensus 109 l~~~i~p~ 116 (139)
+.++++.+
T Consensus 463 ll~~v~~~ 470 (477)
T PF11700_consen 463 LLFFVDVE 470 (477)
T ss_pred HHhhccch
Confidence 66555443
No 76
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=92.02 E-value=0.72 Score=37.81 Aligned_cols=85 Identities=19% Similarity=0.072 Sum_probs=50.0
Q ss_pred HHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHH
Q 038309 30 FTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIV 109 (139)
Q Consensus 30 f~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail 109 (139)
..+.|+.-+....+.++++++..++ ++.+-.+|+.+....+-.++..+.++.+.+.+ +-..++.+.++..+++.+.
T Consensus 108 ~~l~G~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~--~w~~~~~~~~~~~~~~~~~ 183 (406)
T PRK15402 108 RFLQGIGLCFIGAVGYAAIQESFEE--ADAIKITALMANVALLAPLLGPLVGAALIHVL--PWRGMFVLFAALAALSFFG 183 (406)
T ss_pred HHHHHhHhhhHHHHHHHHHHHHhCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--CccHHHHHHHHHHHHHHHH
Confidence 3455666666666777878877776 34445566666554444455444445444433 2345666667676777776
Q ss_pred hhhcccCCC
Q 038309 110 ALTLLPSTT 118 (139)
Q Consensus 110 ~~~i~p~~~ 118 (139)
.++..|+.+
T Consensus 184 ~~~~~~~~~ 192 (406)
T PRK15402 184 LWRAMPETA 192 (406)
T ss_pred HHHhCCCCC
Confidence 665555443
No 77
>PRK12307 putative sialic acid transporter; Provisional
Probab=91.91 E-value=0.2 Score=40.92 Aligned_cols=43 Identities=12% Similarity=0.063 Sum_probs=32.8
Q ss_pred hHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcC
Q 038309 45 FAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCG 89 (139)
Q Consensus 45 yAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfg 89 (139)
.+++.+..|+ +++|..+|+.+.+--+-+++.....|.+.+.+|
T Consensus 343 ~~~~~~~~p~--~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g 385 (426)
T PRK12307 343 PKFLYDYFPL--EVRGLGTGLIYNLAATSGTFNSMAATWLGITMG 385 (426)
T ss_pred HHHHHHhCcH--HHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc
Confidence 3556777777 678999999998888888888777777665544
No 78
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=91.71 E-value=0.28 Score=41.60 Aligned_cols=66 Identities=14% Similarity=0.044 Sum_probs=44.7
Q ss_pred HhhhhhccCCCCCceeeechhhhhhhh-HHHHHHhhhcchhh-hcC---------CCchhHHHHHHHHHHHHHHHhhhc
Q 038309 46 AMASIFSRTSAAGQGLSLGVLNLAIVV-PQMLVSLLSGPFDA-VCG---------GGNMPAFMVGAVAAALSGIVALTL 113 (139)
Q Consensus 46 Am~s~~i~~~g~~~GlyMGIfN~~IVI-PQii~sl~~G~~~~-lfg---------g~~~~A~v~ggv~~liaail~~~i 113 (139)
+.+.+..|+ +..|..+|+.|.+.-+ ...+.....|.+.+ ..+ .+-..+|.+-+++++++.++.+++
T Consensus 372 ~~~~~~~p~--~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 372 VAAVGFVPK--KAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred HHHHhhcch--hhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 455577777 5789999999988665 66666665555544 111 234567777788888887777755
No 79
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=91.69 E-value=0.58 Score=42.03 Aligned_cols=92 Identities=24% Similarity=0.242 Sum_probs=59.4
Q ss_pred HHHHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechh----hhhhhhHHHHHHhhh-cchhhhcCCCc------
Q 038309 24 VGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVL----NLAIVVPQMLVSLLS-GPFDAVCGGGN------ 92 (139)
Q Consensus 24 ~~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIf----N~~IVIPQii~sl~~-G~~~~lfgg~~------ 92 (139)
..-+++..++|+. +..++.....++...|+ +++|..+|++ |+-..+=|++..... -++...+|.+.
T Consensus 129 ~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~--~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g 205 (462)
T PRK15034 129 GIFIVIALLCGFA-GANFASSMGNISFFFPK--AKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADG 205 (462)
T ss_pred HHHHHHHHHHHHH-HHhHHHHHHHHHHHCCH--hHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 3445566677776 66777778888888887 6799999999 888877777665422 22333444432
Q ss_pred -----hhHHHHHHHHHHHHHHHhhhcccCCC
Q 038309 93 -----MPAFMVGAVAAALSGIVALTLLPSTT 118 (139)
Q Consensus 93 -----~~A~v~ggv~~liaail~~~i~p~~~ 118 (139)
.++..+=.+..+++++++++..+.++
T Consensus 206 ~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~ 236 (462)
T PRK15034 206 SVMSLANAAWIWVPLLAIATIAAWSGMNDIA 236 (462)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 12344555666677777776655443
No 80
>PRK10489 enterobactin exporter EntS; Provisional
Probab=91.60 E-value=0.71 Score=38.08 Aligned_cols=66 Identities=14% Similarity=0.099 Sum_probs=45.2
Q ss_pred hHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcc
Q 038309 45 FAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLL 114 (139)
Q Consensus 45 yAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~ 114 (139)
.+++....++ ++++-.+|+.+...-+-+++....+|.+.+.++ -...+.+.++..+++.++.+++.
T Consensus 132 ~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~--~~~~~~~~~~~~~~~~~~~~~l~ 197 (417)
T PRK10489 132 LAATPALVGR--ENLMQAGAITMLTVRLGSVISPALGGLLIAAGG--VAWNYGLAAAGTFITLLPLLRLP 197 (417)
T ss_pred hhhhhhccCH--HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHhCC
Confidence 4566677776 567888999988888888777777776655433 23456677777777776665543
No 81
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=91.57 E-value=0.68 Score=41.86 Aligned_cols=86 Identities=21% Similarity=0.172 Sum_probs=65.7
Q ss_pred HHHHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHH
Q 038309 24 VGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAA 103 (139)
Q Consensus 24 ~~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~ 103 (139)
+.++..+.+.|+.|...++.=.+++-..+|+ +-+|=-++++++....-+-+-++..|.+-+.+| ...++.++|+.+
T Consensus 308 ~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~--~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g--~~~al~~a~~~l 383 (524)
T PF05977_consen 308 WLALIALFLAGAAWIIANSSLNTLVQLSVPD--WVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG--VRTALLIAGAAL 383 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHH
Confidence 5566777889999999887777777788887 567777888887777777777777888766644 345788899998
Q ss_pred HHHHHHhhhc
Q 038309 104 ALSGIVALTL 113 (139)
Q Consensus 104 liaail~~~i 113 (139)
++++++.++.
T Consensus 384 ll~~~~~~~~ 393 (524)
T PF05977_consen 384 LLSALIALRF 393 (524)
T ss_pred HHHHHHHHHh
Confidence 8888887754
No 82
>PRK03633 putative MFS family transporter protein; Provisional
Probab=91.54 E-value=0.54 Score=38.42 Aligned_cols=78 Identities=15% Similarity=0.066 Sum_probs=51.4
Q ss_pred HhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhh
Q 038309 32 VLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVAL 111 (139)
Q Consensus 32 ~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~ 111 (139)
++|+.....+..-.+.+.+..++ ++.+-+++.+|+.--+-+++....+|.+.+.++ ....|.+.+.+.+++.++.+
T Consensus 294 l~g~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g--~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 294 ILGAAGFTLYPVAMAWACEKVEH--HELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS--DNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred HHHHHHHhHHHHHHHHHHccCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHH
Confidence 34444444444444545555555 456778889888877888888888888766554 55677777777777776666
Q ss_pred hc
Q 038309 112 TL 113 (139)
Q Consensus 112 ~i 113 (139)
+.
T Consensus 370 ~~ 371 (381)
T PRK03633 370 RK 371 (381)
T ss_pred hc
Confidence 54
No 83
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=91.53 E-value=0.43 Score=39.56 Aligned_cols=84 Identities=17% Similarity=0.171 Sum_probs=53.4
Q ss_pred chHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhc
Q 038309 34 GIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTL 113 (139)
Q Consensus 34 GIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i 113 (139)
|+..+..+....++.....++. +..|..+|++|....+-+.+.....|++.+..|+ ...++.+..++.++..++.+++
T Consensus 303 g~g~g~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~~~~~~ 380 (393)
T PRK09705 303 GLGLGGAFPLCLLLALDHSVQP-AIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGN-YLMDWAFHALCVVGLMIITLRF 380 (393)
T ss_pred HHhccchHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHh
Confidence 4443433333333434444321 3468889999988888888887777776666553 4566777777777777777777
Q ss_pred ccCCCC
Q 038309 114 LPSTTA 119 (139)
Q Consensus 114 ~p~~~~ 119 (139)
.|+.++
T Consensus 381 ~~~~~~ 386 (393)
T PRK09705 381 APARFP 386 (393)
T ss_pred cccccc
Confidence 776553
No 84
>PRK11043 putative transporter; Provisional
Probab=91.08 E-value=0.94 Score=36.96 Aligned_cols=84 Identities=14% Similarity=0.003 Sum_probs=49.0
Q ss_pred HHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHH
Q 038309 30 FTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIV 109 (139)
Q Consensus 30 f~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail 109 (139)
..+.|+..+......-+++++..++ ++.+-.++.+|....+-..+..+.+|.+.+.++ -...+.+.++..++..++
T Consensus 101 ~~l~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g--~~~~~~~~~~~~~~~~~~ 176 (401)
T PRK11043 101 RFVQAVGVCSAAVIWQALVIDRYPA--QKANRVFATIMPLVALSPALAPLLGAWLLNHFG--WQAIFATLFAITLLLILP 176 (401)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHH
Confidence 3455665555554445667777666 445556677766555555555555555544432 334566667777777777
Q ss_pred hhhcccCC
Q 038309 110 ALTLLPST 117 (139)
Q Consensus 110 ~~~i~p~~ 117 (139)
.+++.|++
T Consensus 177 ~~~~~~~~ 184 (401)
T PRK11043 177 TLRLKPSK 184 (401)
T ss_pred HHHcCCCC
Confidence 66665543
No 85
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=91.03 E-value=1.5 Score=35.67 Aligned_cols=58 Identities=10% Similarity=-0.102 Sum_probs=38.1
Q ss_pred HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhc
Q 038309 29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVC 88 (139)
Q Consensus 29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lf 88 (139)
...+.|+..+.....-.+++.+..++ +++|..+|+.+.+.-+-.++....++.+.+.+
T Consensus 118 ~r~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~ 175 (399)
T PRK05122 118 GRLLLGIGESLAGTGSILWGIGRVGA--LHTGRVISWNGIATYGALAIGAPLGVLLYHWG 175 (399)
T ss_pred HHHHHHhhHHhhcchHHHHHHhhcCh--hhhccchhhhhhhhhHHHHHHHHHHHHHHHcc
Confidence 34567777777666666666777776 56788888887776666555555555544433
No 86
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=90.83 E-value=0.91 Score=37.95 Aligned_cols=83 Identities=17% Similarity=0.105 Sum_probs=54.4
Q ss_pred HHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHH
Q 038309 30 FTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIV 109 (139)
Q Consensus 30 f~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail 109 (139)
.++.|+..+.....=.+++.+..++ ++.|-.+|+.+...-+-+.+....+|.+.+ + +-...+.+.++..++++++
T Consensus 106 ~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~-~--g~~~~f~~~~~~~~~~~i~ 180 (400)
T PRK11646 106 CILSGLGGTLFDPPRTALVIKLIRP--HQRGRFFSLLMMQDSAGAVIGALLGSWLLQ-Y--DFRLVCATGAVLFVLAAAF 180 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--hHHHHHHHHHHHHHHHHHH
Confidence 3444555433222224666777776 678999999988888888887776776552 2 3345677777777777777
Q ss_pred hhhcccCC
Q 038309 110 ALTLLPST 117 (139)
Q Consensus 110 ~~~i~p~~ 117 (139)
+.+..|++
T Consensus 181 ~~~~~~~~ 188 (400)
T PRK11646 181 NAWLLPAY 188 (400)
T ss_pred HHHhCCcc
Confidence 66666654
No 87
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=90.61 E-value=1.4 Score=34.38 Aligned_cols=62 Identities=11% Similarity=0.019 Sum_probs=44.4
Q ss_pred HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeech-hhhhhhhHHHHHHhhhcchhhhcCC
Q 038309 27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGV-LNLAIVVPQMLVSLLSGPFDAVCGG 90 (139)
Q Consensus 27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGI-fN~~IVIPQii~sl~~G~~~~lfgg 90 (139)
+......|+..+.....-++++++..|+ +.+|.++|+ .|+...+-+.+....+|.+.+.+|.
T Consensus 316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~ 378 (394)
T TIGR00883 316 FFLVLGLALIGGMYTGPMGSFLPELFPT--EVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGD 378 (394)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhCCc--cceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCc
Confidence 3444556666666677777888888887 567888998 5666677777777777877776554
No 88
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=90.33 E-value=0.84 Score=39.36 Aligned_cols=84 Identities=13% Similarity=0.084 Sum_probs=56.4
Q ss_pred HHhchHHHHHhhchhHhhhhhc-cCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHH
Q 038309 31 TVLGIPQAITFSVPFAMASIFS-RTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIV 109 (139)
Q Consensus 31 ~~lGIpwAs~lSmPyAm~s~~i-~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail 109 (139)
++.|+..+..+..-++++.... ++ +++|.++|++....-+-+.+..+.+|.+.+.++ -...|.+.....+++.++
T Consensus 102 ~l~G~g~~~~~~~~~~~l~~~~~~~--~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g--wr~~f~i~~~~~~~~~~l 177 (495)
T PRK14995 102 ALLAIGAAMIVPATLAGIRATFTEE--KQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY--WGSVFLINVPIVLVVMGL 177 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHHHHHHHHHHHHHHHHH
Confidence 4567777776666666665554 44 578999999988888877777777777655443 345666666666666666
Q ss_pred hhhcccCCC
Q 038309 110 ALTLLPSTT 118 (139)
Q Consensus 110 ~~~i~p~~~ 118 (139)
.++..|+.+
T Consensus 178 ~~~~l~~~~ 186 (495)
T PRK14995 178 TARYVPRQA 186 (495)
T ss_pred HHHhCCCCC
Confidence 666666544
No 89
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=90.31 E-value=1.9 Score=37.03 Aligned_cols=81 Identities=17% Similarity=0.110 Sum_probs=43.4
Q ss_pred chHHHHHhhchhHhhhhhccCCCCCceeeech-hhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhh
Q 038309 34 GIPQAITFSVPFAMASIFSRTSAAGQGLSLGV-LNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALT 112 (139)
Q Consensus 34 GIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGI-fN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~ 112 (139)
|+..+...+.-.+++.+..|+ +..|..+|+ .|+..+.- .+.+...|.+.+..++...+.+ +..+..+++.+..++
T Consensus 353 g~~~~~~~g~~~~~~~~~~p~--~~Rg~~~g~~~~~~~~~g-~~~p~i~g~l~~~~~~~~~~~~-~~~~~~~i~~~~~~~ 428 (490)
T PRK10642 353 AVILNCFTGVMASTLPAMFPT--HIRYSALAAAFNISVLVA-GLTPTLAAWLVESTQNLMMPAY-YLMVVAVIGLITGVT 428 (490)
T ss_pred HHHHHHHHHHHHHHHHHHCCC--ccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCchHHHH-HHHHHHHHHHHHHHH
Confidence 333333333334555666777 567777885 77777664 4445445544333333333433 445566666666666
Q ss_pred cccCCC
Q 038309 113 LLPSTT 118 (139)
Q Consensus 113 i~p~~~ 118 (139)
+.++|+
T Consensus 429 ~pes~~ 434 (490)
T PRK10642 429 MKETAN 434 (490)
T ss_pred hccccC
Confidence 544444
No 90
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=90.29 E-value=1 Score=39.64 Aligned_cols=83 Identities=7% Similarity=0.086 Sum_probs=58.4
Q ss_pred HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHH
Q 038309 29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGI 108 (139)
Q Consensus 29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaai 108 (139)
..++.|+..+...+...+++++..|+++++.+-.++++.+.+-+-..+....+|.+.+.+| =.++|.+.++.++++-+
T Consensus 111 ~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g--w~~~F~i~~i~~~~~~~ 188 (489)
T PRK10207 111 ALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG--YSVTYNLCGAGLIIALL 188 (489)
T ss_pred HHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHHHH
Confidence 3556788888888888899999998754455667888888888877776666777666554 45678777776555544
Q ss_pred Hhhhc
Q 038309 109 VALTL 113 (139)
Q Consensus 109 l~~~i 113 (139)
..++.
T Consensus 189 ~~~~~ 193 (489)
T PRK10207 189 VYFAC 193 (489)
T ss_pred HHHHc
Confidence 44443
No 91
>PRK03699 putative transporter; Provisional
Probab=90.27 E-value=1.3 Score=36.42 Aligned_cols=83 Identities=14% Similarity=0.067 Sum_probs=46.2
Q ss_pred HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309 27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS 106 (139)
Q Consensus 27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia 106 (139)
++...+.|+..+..++.-.+++++..++ +++|..+++.|.+..+=..+..+..+.+..- ..+-...+.+.++..++.
T Consensus 99 ~~~~~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~gw~~~f~~~~~~~~~~ 175 (394)
T PRK03699 99 SIAMFVLGVVSGITMSIGTFLITHVYEG--KQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR-SIEWYWVYACIGLVYVAI 175 (394)
T ss_pred HHHHHHHHHhhHhhccchhHHhhhhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHH
Confidence 3445567777777777667777887776 5678888877655433333333322322211 112334555556666655
Q ss_pred HHHhhh
Q 038309 107 GIVALT 112 (139)
Q Consensus 107 ail~~~ 112 (139)
.++.++
T Consensus 176 ~~~~~~ 181 (394)
T PRK03699 176 FILTLF 181 (394)
T ss_pred HHHHHh
Confidence 555544
No 92
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=89.89 E-value=1.1 Score=37.55 Aligned_cols=65 Identities=18% Similarity=0.137 Sum_probs=39.3
Q ss_pred hhhhccCCCCCceeeechhhhhhhhH-HHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccC
Q 038309 48 ASIFSRTSAAGQGLSLGVLNLAIVVP-QMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPS 116 (139)
Q Consensus 48 ~s~~i~~~g~~~GlyMGIfN~~IVIP-Qii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~ 116 (139)
+.+..++ +..|.++|+.|.+-.+- +.+.....|.+.+.+| -..++.+..+..+++.+..+++.+.
T Consensus 370 ~~~~~~~--~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (438)
T TIGR00712 370 ALELAPK--KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG--WDGGFMVMIGGSILAVILLIVVMIG 435 (438)
T ss_pred HHHhcCh--hheeeehhhhchHHHhhhhhhcchhHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455565 56899999999876654 4455566666665554 3344555555555665555555443
No 93
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=89.44 E-value=1.2 Score=36.50 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=39.0
Q ss_pred CceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccCCC
Q 038309 58 GQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTT 118 (139)
Q Consensus 58 ~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~~~ 118 (139)
+.+.++|..+....+-..+..+.+|.+.+. +....|.+.++..++..+++++.+|+++
T Consensus 130 ~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~---~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (396)
T TIGR00882 130 NSNFEYGKARMFGCVGWALCASIAGILFSI---DPQIVFWLGSGFALILMLLLMFAKPKAP 187 (396)
T ss_pred hcccccchhhhhcccHHHHHHHHHhhhhcc---CchHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 345677887777777777777776665432 3445777777777777777776666543
No 94
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=88.80 E-value=1.6 Score=37.43 Aligned_cols=86 Identities=10% Similarity=0.071 Sum_probs=52.2
Q ss_pred HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcC------CCchhHHHHHHHH
Q 038309 29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCG------GGNMPAFMVGAVA 102 (139)
Q Consensus 29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfg------g~~~~A~v~ggv~ 102 (139)
.=.+.|+..+..++.-.+++++..|+ ++.|.++|++.....+-.++.++....+..+++ -+=...|.++++.
T Consensus 124 ~R~l~G~g~g~~~~~~~~~~~e~~p~--~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~ 201 (490)
T PRK10642 124 CKMAQGFSVGGEYTGASIFVAEYSPD--RKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPL 201 (490)
T ss_pred HHHHHHhHhHhhHHHHHHHHHHhCCC--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHH
Confidence 33466888888888888999999988 678999999876655554444432222222221 2334567777665
Q ss_pred HHHHHHHhhhcccC
Q 038309 103 AALSGIVALTLLPS 116 (139)
Q Consensus 103 ~liaail~~~i~p~ 116 (139)
.+++-++..++.++
T Consensus 202 ~l~~~~~~~~~~es 215 (490)
T PRK10642 202 GIIGLYLRHALEET 215 (490)
T ss_pred HHHHHHHHHcCCCC
Confidence 55544333334333
No 95
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=88.66 E-value=3.1 Score=34.36 Aligned_cols=82 Identities=13% Similarity=0.010 Sum_probs=46.4
Q ss_pred HhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhh
Q 038309 32 VLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVAL 111 (139)
Q Consensus 32 ~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~ 111 (139)
++++-.+...-.-=+++++..++ +++|.++|+.....-+-+++.+..++.+.+.+. +-...|.+.++..+++.+..+
T Consensus 103 ~~~~~~~~~~~~~~al~~~~~~~--~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~-gw~~~f~i~a~~~l~~~l~~~ 179 (402)
T PRK11902 103 LVAFLSASQDIVFDAYSTDVLHP--EERGAGAAVKVLGYRLAMLVSGGLALWLADRVL-GWGNTYLLMAGLMLAGALTTL 179 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCh--hhhhHHHHHHHHHHHHHHHHHhHHHHHHHhccc-CHHHHHHHHHHHHHHHHHHHH
Confidence 34443333333333777888777 568999998877666666665544444433221 344466666666666555544
Q ss_pred hcccCC
Q 038309 112 TLLPST 117 (139)
Q Consensus 112 ~i~p~~ 117 (139)
++ |+|
T Consensus 180 ~~-~e~ 184 (402)
T PRK11902 180 WA-PEP 184 (402)
T ss_pred hc-CCC
Confidence 44 444
No 96
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=88.25 E-value=1.2 Score=37.67 Aligned_cols=85 Identities=18% Similarity=0.080 Sum_probs=43.1
Q ss_pred HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHH-HhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309 28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLV-SLLSGPFDAVCGGGNMPAFMVGAVAAALS 106 (139)
Q Consensus 28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~-sl~~G~~~~lfgg~~~~A~v~ggv~~lia 106 (139)
++..+.|+.-+..+..--+++++..++ +++|..+|++|....+--.+. .+.+.... ... +-..++.+.++..++.
T Consensus 125 ~~~~l~gi~~g~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~-gw~~~f~i~~~~~~~~ 200 (452)
T PRK11273 125 VLLFLCGWFQGMGWPPCGRTMVHWWSQ--KERGGIVSVWNCAHNVGGGLPPLLFLLGMA-WFN-DWHAALYMPAFAAILV 200 (452)
T ss_pred HHHHHHHHHHhccchHHHHHHHHhCCh--HHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-Hhc-cHHHHHHHHHHHHHHH
Confidence 334445554443322223445565666 568999999887765442111 11111111 112 3345677766666666
Q ss_pred HHHhhhcccC
Q 038309 107 GIVALTLLPS 116 (139)
Q Consensus 107 ail~~~i~p~ 116 (139)
+++.++..++
T Consensus 201 ~~l~~~~~~~ 210 (452)
T PRK11273 201 ALFAFAMMRD 210 (452)
T ss_pred HHHHHHHccC
Confidence 6666555444
No 97
>PRK11010 ampG muropeptide transporter; Validated
Probab=88.13 E-value=2.9 Score=36.50 Aligned_cols=68 Identities=15% Similarity=0.147 Sum_probs=50.1
Q ss_pred hHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccC
Q 038309 45 FAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPS 116 (139)
Q Consensus 45 yAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~ 116 (139)
+++....+++ +-.|..+|++|.+.-+..++.+...|.+.+.+| -...|.+.+++.+++.++.++++++
T Consensus 338 ~a~~~~l~~~--~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G--~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 338 VALLMTLCNK--SFSATQFALLSALSAVGRVYVGPVAGWFVEAHG--WPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHcCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555556665 345777899999888888887777777666554 3457888899999988888877655
No 98
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=88.13 E-value=1.5 Score=35.90 Aligned_cols=89 Identities=15% Similarity=0.256 Sum_probs=49.9
Q ss_pred HHHHHHhchHHHHHhhchh-HhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCC-c----hhHHHHHH
Q 038309 27 LAIFTVLGIPQAITFSVPF-AMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGG-N----MPAFMVGA 100 (139)
Q Consensus 27 l~lf~~lGIpwAs~lSmPy-Am~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~-~----~~A~v~gg 100 (139)
++...++++.++. ..+|| ++.+...+++ ++++-..++.+++..+-.++.++..+++...++++ + ...+.+.+
T Consensus 103 ~~~~~~~~~~~~~-~~~~~~al~~~~~~~~-~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~ 180 (437)
T TIGR00792 103 YITYILLGLFYSF-VNIPYWSLVPAITLDP-RERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLA 180 (437)
T ss_pred HHHHHHHHHHHHh-hcccHhhCcccccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHH
Confidence 3344445555554 45787 4444444433 45667788888887777777777667766655531 1 12344555
Q ss_pred HHHHHHHHHhh-hcccCC
Q 038309 101 VAAALSGIVAL-TLLPST 117 (139)
Q Consensus 101 v~~liaail~~-~i~p~~ 117 (139)
+..++..++++ ++++++
T Consensus 181 ~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 181 LIGVVSLIICFFGTKERY 198 (437)
T ss_pred HHHHHHHHHHHcCCEecC
Confidence 55555555544 444443
No 99
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=88.09 E-value=2.4 Score=33.99 Aligned_cols=73 Identities=21% Similarity=0.197 Sum_probs=41.8
Q ss_pred HHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309 31 TVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS 106 (139)
Q Consensus 31 ~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia 106 (139)
.+.|+..+.....-.+++.+..+ ++.|..+|++|....+-+.+..+.++++.+.++.+-...+...++..+++
T Consensus 95 ~~~g~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~ 167 (355)
T TIGR00896 95 ALIGVGIAIINVLLPSLIKRDFP---QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLA 167 (355)
T ss_pred HHHHHHHHHHhccchHHHHHhCc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 34455444444333445555543 36899999999988888887776666655443332233444444444433
No 100
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=87.85 E-value=3.9 Score=34.29 Aligned_cols=72 Identities=11% Similarity=0.056 Sum_probs=40.5
Q ss_pred chhHhhhhhccCCCCCceeeechhhhh-hhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccCCC
Q 038309 43 VPFAMASIFSRTSAAGQGLSLGVLNLA-IVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTT 118 (139)
Q Consensus 43 mPyAm~s~~i~~~g~~~GlyMGIfN~~-IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~~~ 118 (139)
+..+++++..|+ +..|..+|+.|.. -++=.-......+.+++ . |.....+.+.++.++++.+..+++.+++|
T Consensus 356 ~~~~~~~e~fp~--~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~-~-g~~~~~~~~~~~~~~i~~~~~~~l~~~~~ 428 (432)
T PRK10406 356 ISGILKAEMFPA--QVRALGVGLSYAVANALFGGSAEYVALSLKS-I-GMETAFFWYVTLMAVVAFLVSLMLHRKGK 428 (432)
T ss_pred HHHHHHHHHCCC--CccchhhhHHHHHHHHHHHhHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 445667788887 5678888886642 11100112223333333 2 33344567778888888888777655433
No 101
>PRK09848 glucuronide transporter; Provisional
Probab=87.50 E-value=2.6 Score=35.40 Aligned_cols=63 Identities=16% Similarity=0.222 Sum_probs=47.8
Q ss_pred HHHHHHhchHHHHHhhchhHhhhhhccCCC-----CCceeeechhhhhhhhHHHHHHhhhcchhhhcC
Q 038309 27 LAIFTVLGIPQAITFSVPFAMASIFSRTSA-----AGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCG 89 (139)
Q Consensus 27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g-----~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfg 89 (139)
+..+.+.|+..+..+..+.++.+...+..+ ++.|.++|++|++.-+-+.+.....|.+.+..|
T Consensus 323 ~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G 390 (448)
T PRK09848 323 LVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSG 390 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344566788888888889999988887531 245999999999999998888776776665544
No 102
>PRK09669 putative symporter YagG; Provisional
Probab=87.40 E-value=2 Score=36.20 Aligned_cols=65 Identities=12% Similarity=0.199 Sum_probs=33.8
Q ss_pred HHHHHHHHHhchHHHHHhhchhHhh-hhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCC
Q 038309 24 VGALAIFTVLGIPQAITFSVPFAMA-SIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGG 90 (139)
Q Consensus 24 ~~al~lf~~lGIpwAs~lSmPyAm~-s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg 90 (139)
+..++...++++.+. .+.+||.-+ ++..++.+ +++-..+....+..+-.++.++...++...+++
T Consensus 110 ~~~~~~~~l~~~~~t-~~~ip~~al~~~~t~~~~-eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~ 175 (444)
T PRK09669 110 IYACVTYILLSLVYT-AINVPYCAMPGAITNDPR-ERHSLQSWRFALSFIGGLIVSVIALPLVDILGK 175 (444)
T ss_pred HHHHHHHHHHHHHHH-hhcchHHHhHHHhcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 445555566677777 577898544 44443332 333333433333344445555445555555654
No 103
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=87.32 E-value=2.1 Score=37.55 Aligned_cols=78 Identities=12% Similarity=0.130 Sum_probs=52.0
Q ss_pred HHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHH
Q 038309 30 FTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIV 109 (139)
Q Consensus 30 f~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail 109 (139)
..+.|+..+.....+.++++...++++.+.+-.++++|+.+-+-..+..+.+|.+.+.+| -..+|.++++.++++.+.
T Consensus 119 ~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g--~~~~F~i~~i~~~i~~i~ 196 (500)
T PRK09584 119 MATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG--WSVAFALSVVGMLITVVN 196 (500)
T ss_pred HHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC--HHHHHHHHHHHHHHHHHH
Confidence 345566666666677788888877644444446788888888887777777777655443 455777777666665543
No 104
>PRK11462 putative transporter; Provisional
Probab=87.20 E-value=3.3 Score=35.81 Aligned_cols=67 Identities=18% Similarity=0.287 Sum_probs=42.9
Q ss_pred HHHHHHHHHhchHHHHHhhchh-HhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCc
Q 038309 24 VGALAIFTVLGIPQAITFSVPF-AMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGN 92 (139)
Q Consensus 24 ~~al~lf~~lGIpwAs~lSmPy-Am~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~ 92 (139)
+..++..+++.+.+... .+|| |+.++..+++ +.+.-.++...++-.+-.++.++...|+.+.+|+++
T Consensus 110 ~y~~~~~~~~~~~~t~~-~ipy~al~~~lt~d~-~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~ 177 (460)
T PRK11462 110 IYAAITYTLLTLLYTVV-NIPYCALGGVITNDP-TQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDN 177 (460)
T ss_pred HHHHHHHHHHHHHHHHH-hccHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 45666666677777654 4899 5555555554 456666777776666666666666666667677543
No 105
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=86.93 E-value=1.9 Score=35.67 Aligned_cols=57 Identities=9% Similarity=-0.031 Sum_probs=31.9
Q ss_pred HHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHH-HHHhhhcchhhhcC
Q 038309 31 TVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQM-LVSLLSGPFDAVCG 89 (139)
Q Consensus 31 ~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQi-i~sl~~G~~~~lfg 89 (139)
...|+..+.....-.+.+.+..++ +++|..+|+.+...-+-+. +..+.++...+.+|
T Consensus 113 ~i~G~g~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g 170 (402)
T TIGR00897 113 GIRGLGYPLFAYSFLVWVVYNTKQ--DNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG 170 (402)
T ss_pred HHHHcchHHHHhHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 334554444333333444555566 5789999999988777663 33444444433344
No 106
>PRK10504 putative transporter; Provisional
Probab=86.65 E-value=2.9 Score=35.00 Aligned_cols=60 Identities=10% Similarity=0.100 Sum_probs=41.3
Q ss_pred HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCC
Q 038309 29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGG 90 (139)
Q Consensus 29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg 90 (139)
.+.+.|+..+..++.-.+++...+++ +..|..+|++|+..=+-+.+.....|.+.+.+|.
T Consensus 359 ~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 359 VLFLQGMVNSTRFSSMNTLTLKDLPD--NLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCH--HhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455555555555555666666776 5688999999998888888777777776666554
No 107
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=86.59 E-value=1 Score=39.20 Aligned_cols=81 Identities=16% Similarity=0.117 Sum_probs=49.1
Q ss_pred HhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhh
Q 038309 32 VLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVAL 111 (139)
Q Consensus 32 ~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~ 111 (139)
++|+.=..+...-++++++..|+ +.+|.|||+++++.-+=..+.+....... ...+...-+..-++.+++.+++.+
T Consensus 390 ~~~~ge~~~~p~~~~~~~~~aP~--~~~g~~~g~~~l~~~~g~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 465 (475)
T TIGR00924 390 FQTLGELMISPLGLSWWTKIAPQ--RLMGQMLGMWFLAQAMGSLLGGYLATFGA--VPQGVTGVFGKIGLVTLLVGVVMA 465 (475)
T ss_pred HHHHHHHHHhHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccchhhHHHHHHHHHHHHHHHHH
Confidence 33333333444445677787787 68999999999777666555544333221 122334455666677777777777
Q ss_pred hcccC
Q 038309 112 TLLPS 116 (139)
Q Consensus 112 ~i~p~ 116 (139)
++.|+
T Consensus 466 ~~~~~ 470 (475)
T TIGR00924 466 LMVPW 470 (475)
T ss_pred HHHHH
Confidence 66654
No 108
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=86.26 E-value=0.23 Score=45.79 Aligned_cols=83 Identities=18% Similarity=0.138 Sum_probs=64.1
Q ss_pred HHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCC---chhHHHHHHHHHHHHH
Q 038309 31 TVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGG---NMPAFMVGAVAAALSG 107 (139)
Q Consensus 31 ~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~---~~~A~v~ggv~~liaa 107 (139)
...||.-|+...+-=.+++...++ .+.+.-+|+||+.|-+--++ |.+.-....+- =..+|.+.|+..++.+
T Consensus 129 ~~vGiGeAs~~~ia~s~IaD~f~~--~~Rs~~~~ify~~ipvGsgl----G~vvgs~va~~~~~Wr~af~~~avl~vi~~ 202 (493)
T KOG1330|consen 129 GFVGIGEASYSPIAPSLIADSFPD--DKRSRVLGIFYFAIPVGSGL----GYVVGSVVASLTFWWRWAFRGSAVLGVIVG 202 (493)
T ss_pred HHhccchhhhcccchhHhhhcCcc--hhhhHHHHHhhhhcccccce----eEEeeeeeccCccceEEEEEeehHHHHHHH
Confidence 467999999988888888988888 68999999999988665332 22222233333 3469999999999999
Q ss_pred HHhhhcccCCCC
Q 038309 108 IVALTLLPSTTA 119 (139)
Q Consensus 108 il~~~i~p~~~~ 119 (139)
++.+++++.|..
T Consensus 203 ~L~~~f~~eP~r 214 (493)
T KOG1330|consen 203 LLVFLFVREPER 214 (493)
T ss_pred HHHHhhccCccc
Confidence 999999998875
No 109
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=85.93 E-value=4.8 Score=35.02 Aligned_cols=82 Identities=12% Similarity=0.179 Sum_probs=53.4
Q ss_pred HHhchHHHHHhhchhHhhhhhccCCC-CCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHH
Q 038309 31 TVLGIPQAITFSVPFAMASIFSRTSA-AGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIV 109 (139)
Q Consensus 31 ~~lGIpwAs~lSmPyAm~s~~i~~~g-~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail 109 (139)
.++|+..+.......++++...++++ .+++..+++++..+-+=..+..+.+|.+.+.++ -..+|.++++.++++.+.
T Consensus 110 ~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g--~~~~f~~~~~~~~~~~l~ 187 (475)
T TIGR00924 110 GTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG--YHVGFNLAAVGMVIGLLT 187 (475)
T ss_pred HHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHH
Confidence 34556555555666677787777643 356778899998888888887776666544332 345777777777776555
Q ss_pred hhhcc
Q 038309 110 ALTLL 114 (139)
Q Consensus 110 ~~~i~ 114 (139)
.++..
T Consensus 188 ~~~~~ 192 (475)
T TIGR00924 188 FFAGR 192 (475)
T ss_pred HHHcc
Confidence 44433
No 110
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=85.90 E-value=2 Score=38.61 Aligned_cols=81 Identities=10% Similarity=0.107 Sum_probs=58.8
Q ss_pred HHHHHhhchh-HhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcch--hhhcC-----------CCchhHHHHHHH
Q 038309 36 PQAITFSVPF-AMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPF--DAVCG-----------GGNMPAFMVGAV 101 (139)
Q Consensus 36 pwAs~lSmPy-Am~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~--~~lfg-----------g~~~~A~v~ggv 101 (139)
...... .|+ |+++...|+++++++...++++.+.-+=+++..+.++.. ...|+ .+-..+|.++++
T Consensus 127 ~~n~~~-~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~ 205 (477)
T TIGR01301 127 ANNMLQ-GPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDII 205 (477)
T ss_pred HHHHHH-HHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHH
Confidence 443333 355 788888888655678999999999999999988877753 22331 134568999999
Q ss_pred HHHHHHHHhhh-cccCC
Q 038309 102 AAALSGIVALT-LLPST 117 (139)
Q Consensus 102 ~~liaail~~~-i~p~~ 117 (139)
+++++.+++++ ++++|
T Consensus 206 ~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 206 LLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHeeeeeccC
Confidence 99999998886 44444
No 111
>PRK12382 putative transporter; Provisional
Probab=85.59 E-value=6.5 Score=31.97 Aligned_cols=56 Identities=9% Similarity=0.011 Sum_probs=37.1
Q ss_pred HHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhc
Q 038309 31 TVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVC 88 (139)
Q Consensus 31 ~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lf 88 (139)
.+.|+..+.......+.+.+..++ ++.|..||+.....-+...+..+.++.+.+.+
T Consensus 120 ~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~ 175 (392)
T PRK12382 120 LILGFGESQLLTGALTWGLGLVGP--KHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF 175 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCc--cccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455666665555555666777776 67888999887777666666666666554433
No 112
>PRK11010 ampG muropeptide transporter; Validated
Probab=85.33 E-value=4.6 Score=35.25 Aligned_cols=83 Identities=13% Similarity=-0.050 Sum_probs=51.3
Q ss_pred HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHH
Q 038309 29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGI 108 (139)
Q Consensus 29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaai 108 (139)
+..+.|+..+..-..--+++++..++ +++|.++|+.++..-+-.++.+...+.+.+-+ .+-...|.+.++..++..+
T Consensus 113 ~~~l~~~~~a~~~i~~~a~~~~~~~~--~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~-~GWr~~f~i~a~l~ll~~l 189 (491)
T PRK11010 113 LAVVIAFCSASQDIVFDAWKTDVLPA--EERGAGAAISVLGYRLAMLVSGGLALWLADRY-LGWQGMYWLMAALLIPCII 189 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCHHHHHHHHHHHHHHHHH
Confidence 34455665554443444778888886 56898999988777777776665555544311 1334466666666777766
Q ss_pred Hhhhcc
Q 038309 109 VALTLL 114 (139)
Q Consensus 109 l~~~i~ 114 (139)
+.++++
T Consensus 190 ~~~~~~ 195 (491)
T PRK11010 190 ATLLAP 195 (491)
T ss_pred HHHhcC
Confidence 666543
No 113
>PRK09669 putative symporter YagG; Provisional
Probab=84.52 E-value=1.8 Score=36.41 Aligned_cols=64 Identities=17% Similarity=0.105 Sum_probs=49.3
Q ss_pred HHHHHHHhchHHHHHhhchhHhhhhhccCCCC-----CceeeechhhhhhhhHHHHHHhhhcchhhhcC
Q 038309 26 ALAIFTVLGIPQAITFSVPFAMASIFSRTSAA-----GQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCG 89 (139)
Q Consensus 26 al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~-----~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfg 89 (139)
.++..+..|+..+....++.+|++..++..+. ..|++.|+.+++.=+-|.+.++.+|.+.+.+|
T Consensus 322 ~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G 390 (444)
T PRK09669 322 IFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD 390 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455678999999999999999998863222 24778899999999999998887777666543
No 114
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=84.46 E-value=5 Score=33.72 Aligned_cols=66 Identities=14% Similarity=0.176 Sum_probs=43.0
Q ss_pred HhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhh
Q 038309 40 TFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVAL 111 (139)
Q Consensus 40 ~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~ 111 (139)
.++.=+++.++..|+ +..|..+|+.|..-=+-.++.....+.+. .+....|.+-++.++++++.++
T Consensus 297 ~~~~~~~~~~~~~p~--~~rgt~~G~~~~~g~~~~~~~~~~~~~~~----~~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 297 AYAIIMDWIGKFCDK--ELHGKAAGAIGFTSRAISVALALAAMLFI----SSAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred hHHHHHHHHHHhcch--hhcCcccchhhHHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHHHH
Confidence 333344677788887 56788899988866555555444444333 1445667777888888888765
No 115
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=84.01 E-value=5.3 Score=31.62 Aligned_cols=78 Identities=14% Similarity=0.171 Sum_probs=41.9
Q ss_pred HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhh-hhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHH
Q 038309 27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAI-VVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAAL 105 (139)
Q Consensus 27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~I-VIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~li 105 (139)
+..+...|+.++..+....+...+..| +++|..++++|..- .+..+. +++..+...+....+.+.+.+..+
T Consensus 304 ~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~g~i~-----~~~~~~~~~~~~~~~~~~~~~~~~ 375 (385)
T TIGR00710 304 IGPMMFVGIGNSMISSIAMAYALEDFP---HVAGTASALFGTLRLVLGAIV-----GYLVSLIHGNTAWPMSLSCLVLAV 375 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCc---ccchHHHHHHHHHHHHHHHHH-----HHHHHhccccChHHHHHHHHHHHH
Confidence 334556677777776666665555443 46788999988653 223222 222333334444555555555555
Q ss_pred HHHHhhh
Q 038309 106 SGIVALT 112 (139)
Q Consensus 106 aail~~~ 112 (139)
.++++++
T Consensus 376 ~~~~~~~ 382 (385)
T TIGR00710 376 VSVLAFY 382 (385)
T ss_pred HHHHHHH
Confidence 5554443
No 116
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=83.80 E-value=4.7 Score=32.98 Aligned_cols=72 Identities=18% Similarity=0.259 Sum_probs=47.2
Q ss_pred HHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhh
Q 038309 37 QAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVAL 111 (139)
Q Consensus 37 wAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~ 111 (139)
.+.....-++.++...++ ++.+|..+++.|.+.-+-.++.+..+|.+.+.+| -...+.+++++.+++.++.+
T Consensus 317 ~g~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G--~~~~f~~~~~~~l~a~~~~~ 388 (390)
T TIGR02718 317 TGITSVAIYTAFMRFAGD-GDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG--YAGGFLSGTVLAVLAILLAV 388 (390)
T ss_pred HHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHhc
Confidence 344433334444455443 2467889999998888888888887887766654 34667777777777766543
No 117
>PRK03699 putative transporter; Provisional
Probab=83.68 E-value=2.6 Score=34.74 Aligned_cols=79 Identities=13% Similarity=0.131 Sum_probs=47.8
Q ss_pred HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHH
Q 038309 29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGI 108 (139)
Q Consensus 29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaai 108 (139)
+..+.|+.++..+++..+......++ +.+..+|..+.+--+=+++.+...|.+.+.+|- ..++.+.+++.+++.+
T Consensus 300 ~~~~~G~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~--~~~~~~~~~~~~~~~~ 374 (394)
T PRK03699 300 AILGLGFFSSAIYTTIITLGSQQTKV---ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGL--QAALLTANGLYAVVFV 374 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC---CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCc--hhhhhhhHHHHHHHHH
Confidence 34455666665655555555554443 234456777777777788888878887776553 3455555555666655
Q ss_pred Hhhh
Q 038309 109 VALT 112 (139)
Q Consensus 109 l~~~ 112 (139)
+++.
T Consensus 375 ~~~~ 378 (394)
T PRK03699 375 MCIL 378 (394)
T ss_pred HHHH
Confidence 5443
No 118
>PRK03893 putative sialic acid transporter; Provisional
Probab=83.01 E-value=2.2 Score=35.79 Aligned_cols=74 Identities=12% Similarity=0.086 Sum_probs=48.4
Q ss_pred HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHH
Q 038309 27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAA 104 (139)
Q Consensus 27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~l 104 (139)
++...+.|+..+..++...+++.+..++ +++|..+|+++...-+-+++.....+.+.+.++ -...+.++.+..+
T Consensus 112 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--w~~~f~~~~~~~~ 185 (496)
T PRK03893 112 FIARLVIGMGMAGEYGSSATYVIESWPK--HLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG--WRALFFIGILPII 185 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--HHHHHHHHHHHHH
Confidence 3445567888888888888888998887 567888899888777766666555555443322 2234444444333
No 119
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=82.98 E-value=4.8 Score=33.06 Aligned_cols=77 Identities=12% Similarity=0.006 Sum_probs=49.4
Q ss_pred HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhh-hhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHH
Q 038309 29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNL-AIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSG 107 (139)
Q Consensus 29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~-~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaa 107 (139)
+..+-|+..+.........++.. |+ ++++.++|++|. ..-+-.++-++.+|.+.+.+| ...+.+.++..+++.
T Consensus 299 ~q~l~g~~~~~~~~~~~~~i~~~-~~--~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g---~~~~~~~~~~~~~~~ 372 (382)
T TIGR00902 299 LQILHCGTFAVCHLAAMRYIAAQ-PG--SEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG---AGTFVFMAIIAAAAF 372 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHH
Confidence 34455555555555555556655 55 567888999884 455777777888888766654 255666666666665
Q ss_pred HHhh
Q 038309 108 IVAL 111 (139)
Q Consensus 108 il~~ 111 (139)
++++
T Consensus 373 ~~~~ 376 (382)
T TIGR00902 373 FLIP 376 (382)
T ss_pred HHHH
Confidence 5544
No 120
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=82.84 E-value=5.8 Score=34.38 Aligned_cols=84 Identities=15% Similarity=0.160 Sum_probs=49.0
Q ss_pred HHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhh-hhHHHHHHhhhcchhhhcCCCchh----HHHHHHHHHHH
Q 038309 31 TVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAI-VVPQMLVSLLSGPFDAVCGGGNMP----AFMVGAVAAAL 105 (139)
Q Consensus 31 ~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~I-VIPQii~sl~~G~~~~lfgg~~~~----A~v~ggv~~li 105 (139)
.+=|+-++.....-...+.+..|+ +-+.-.+|+++... =+--.+-++.+|.+.+.+|.+... .+.++++..++
T Consensus 309 ~lhG~tf~~~~~a~~~yi~~~~p~--~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~ 386 (400)
T PF03825_consen 309 LLHGLTFGLFHAASVRYIDRIAPP--ELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALV 386 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHHhCCc--cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHH
Confidence 445777777776666777777776 33344444444432 366677788899888877877643 23333333333
Q ss_pred HH-HHhhhcccC
Q 038309 106 SG-IVALTLLPS 116 (139)
Q Consensus 106 aa-il~~~i~p~ 116 (139)
.. +++++.|||
T Consensus 387 ~~~~f~~~fk~~ 398 (400)
T PF03825_consen 387 ILVLFVILFKPK 398 (400)
T ss_pred HHHHHHhhccCC
Confidence 33 334445554
No 121
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=82.52 E-value=1.7 Score=38.15 Aligned_cols=87 Identities=14% Similarity=0.148 Sum_probs=51.3
Q ss_pred HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchh------hhc--CCCchhHHHHH
Q 038309 28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFD------AVC--GGGNMPAFMVG 99 (139)
Q Consensus 28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~------~lf--gg~~~~A~v~g 99 (139)
..++++|+.-..+..+=++++++..|+ +.+|.+||++.+...+-..+.+...+.+. ... .++-...|..-
T Consensus 387 ~~~~l~~~ge~~~~p~g~s~~~~~aP~--~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 464 (500)
T PRK09584 387 ASYGLQSIGELMISGLGLAMVAQLVPQ--RLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQI 464 (500)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHH
Confidence 334444444445555555777788888 68999999998888777766655443111 010 11224566666
Q ss_pred HHHHHHHHHHhhhcccC
Q 038309 100 AVAAALSGIVALTLLPS 116 (139)
Q Consensus 100 gv~~liaail~~~i~p~ 116 (139)
++.+++.+++.+++.|+
T Consensus 465 ~~~~~~~a~~~~~~~~~ 481 (500)
T PRK09584 465 GIATAVIAVLMLLTAPK 481 (500)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666566555554443
No 122
>PRK11043 putative transporter; Provisional
Probab=81.70 E-value=7.8 Score=31.63 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=22.5
Q ss_pred HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhh
Q 038309 29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLA 69 (139)
Q Consensus 29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~ 69 (139)
.+..+|+..+..+..-.+...+..+ +.+|-.+|+.|..
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~g~~~~~ 339 (401)
T PRK11043 302 PFCVMAAANGAIYPIVVAQALRPFP---QATGKAAALQNTL 339 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhCc---ccChHHHHHHHHH
Confidence 3445555555555544444333333 4689999999975
No 123
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=81.65 E-value=3.5 Score=34.61 Aligned_cols=58 Identities=19% Similarity=0.165 Sum_probs=41.4
Q ss_pred CCceeeechhhhhhhhHHHHHHhhhcchhhhcCCC-chhHHHHHHHHHHHHHHHhhhcc
Q 038309 57 AGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGG-NMPAFMVGAVAAALSGIVALTLL 114 (139)
Q Consensus 57 ~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~-~~~A~v~ggv~~liaail~~~i~ 114 (139)
+..|..+|+.|+.-.+..++.....|.+.+-.+.+ -..+|.+.++..++++++..++.
T Consensus 392 ~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 450 (465)
T TIGR00894 392 RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIFG 450 (465)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeeee
Confidence 46799999999998888888877666644322212 34577888888888888777543
No 124
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=81.59 E-value=5.5 Score=34.38 Aligned_cols=82 Identities=20% Similarity=0.027 Sum_probs=42.8
Q ss_pred HHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcC-------CCchhHHHHHHHH
Q 038309 30 FTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCG-------GGNMPAFMVGAVA 102 (139)
Q Consensus 30 f~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfg-------g~~~~A~v~ggv~ 102 (139)
..+.|+..+.... ....+++..+. +++|..+|+.|...-+--.+..+..+.+...+. .+-...|.+.++.
T Consensus 131 r~l~G~~~~~~~~-~~~~i~~~~~~--~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l 207 (476)
T PLN00028 131 RFFIGFSLATFVS-CQYWMSTMFNG--KIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLL 207 (476)
T ss_pred HHHHHHHHHhhHH-HHHHHHHhcCh--hheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHH
Confidence 3456666554332 33456777777 678999999875332222222221111111110 1234567777777
Q ss_pred HHHHHHHhhhcc
Q 038309 103 AALSGIVALTLL 114 (139)
Q Consensus 103 ~liaail~~~i~ 114 (139)
.++..++.+++.
T Consensus 208 ~l~~~l~~~~~~ 219 (476)
T PLN00028 208 HIIMGILVLTLG 219 (476)
T ss_pred HHHHHHHHHHHc
Confidence 666666666544
No 125
>PRK09952 shikimate transporter; Provisional
Probab=81.20 E-value=6.7 Score=33.21 Aligned_cols=73 Identities=11% Similarity=0.070 Sum_probs=47.4
Q ss_pred HHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCC------CchhHHHHHHHHHH
Q 038309 31 TVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGG------GNMPAFMVGAVAAA 104 (139)
Q Consensus 31 ~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg------~~~~A~v~ggv~~l 104 (139)
.+.|+..+..+..-.+++++..|+ +++|.+++..++...+=.++.......+...+++ +=...|.++++..+
T Consensus 133 ~l~G~~~g~~~~~~~~~~~e~~p~--~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l 210 (438)
T PRK09952 133 AIQGFAVGGEWGGAALLAVESAPK--NKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL 210 (438)
T ss_pred HHHHhhhcccHHHHHHHHHHhCCC--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence 456777777666556788898888 5789999999888777666655444443333321 22346677766654
Q ss_pred H
Q 038309 105 L 105 (139)
Q Consensus 105 i 105 (139)
+
T Consensus 211 ~ 211 (438)
T PRK09952 211 I 211 (438)
T ss_pred H
Confidence 4
No 126
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=80.62 E-value=2.2 Score=33.14 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=41.0
Q ss_pred HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcC
Q 038309 28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCG 89 (139)
Q Consensus 28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfg 89 (139)
+....+|+-........+.++++..|+ +++|..+|++|....+-+.+.....|.+.+.+|
T Consensus 315 ~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 374 (379)
T TIGR00881 315 ICLFALGFLVYGPQMLIGVIASELAPK--KAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG 374 (379)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhcCc--chhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc
Confidence 334445544444444445667777777 678999999999998888887777777655443
No 127
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=80.43 E-value=9.8 Score=31.28 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=36.1
Q ss_pred hchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCch
Q 038309 33 LGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNM 93 (139)
Q Consensus 33 lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~ 93 (139)
.|..++.....-.+++... + ++.|..+|..+...-+-.++..+.+|.+.+.+|-+..
T Consensus 104 ~~~~~~~~~p~~~al~~~~--~--~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~ 160 (382)
T TIGR00902 104 FALFFSAGMPIGDALANTW--Q--KQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNI 160 (382)
T ss_pred HHHHHccchhHHHHHHHHH--H--HHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHH
Confidence 4444444433333443322 2 4567889999998888888888877777776664443
No 128
>TIGR00895 2A0115 benzoate transport.
Probab=80.26 E-value=1.5 Score=34.51 Aligned_cols=56 Identities=18% Similarity=0.093 Sum_probs=43.6
Q ss_pred HHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcc
Q 038309 26 ALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGP 83 (139)
Q Consensus 26 al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~ 83 (139)
.+..+.+.|+.++..+...++++++..|+ +.+|..+|+.+...-+.+.+..+.+|.
T Consensus 341 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~~g~~~~G~ 396 (398)
T TIGR00895 341 LLLLGAIAGFFVNGGQSGLYALMALFYPT--AIRATGVGWAIGIGRLGAIIGPILAGY 396 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCH--HHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 44556678888888888888998998887 568889999988877777776665554
No 129
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=80.19 E-value=4.9 Score=34.37 Aligned_cols=81 Identities=14% Similarity=0.088 Sum_probs=51.3
Q ss_pred HHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHh
Q 038309 31 TVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVA 110 (139)
Q Consensus 31 ~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~ 110 (139)
+..|+..+......++++....+ ++.|..+|+.|...-+=..+....+|.+.+.+ +-..+|.+.++..+++.++.
T Consensus 116 ~l~G~~~~~~~~~~~~~~~~~~~---~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~--gwr~~f~~~~~~~~~~~v~~ 190 (455)
T TIGR00892 116 FITGLGLAFNFQPSLTMLGKYFY---RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF--GWRGSFLILGGLLLHCCVCG 190 (455)
T ss_pred HHHHhcchhhhhHHHHHHHHHHH---hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHH
Confidence 34466666555555666666664 35789999999887766555555555554444 24456777777766666666
Q ss_pred hhcccC
Q 038309 111 LTLLPS 116 (139)
Q Consensus 111 ~~i~p~ 116 (139)
+++++.
T Consensus 191 ~~~~~~ 196 (455)
T TIGR00892 191 ALMRPV 196 (455)
T ss_pred HHhCCC
Confidence 665553
No 130
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=80.02 E-value=11 Score=30.80 Aligned_cols=59 Identities=15% Similarity=0.016 Sum_probs=33.3
Q ss_pred CceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccCCC
Q 038309 58 GQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTT 118 (139)
Q Consensus 58 ~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~~~ 118 (139)
+++.+.++.....-+=.++.+...+.+.+.+| -...|.+.++..++..+..++++|+++
T Consensus 130 ~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~g--w~~~f~~~a~l~~~~~~~~~~~~~~~~ 188 (390)
T TIGR02718 130 TLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFG--QRPAFLLVACVPLASLVCVLWLKDRAV 188 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 34555555555544454554444444444443 334667777777777777777766543
No 131
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=79.55 E-value=6.1 Score=32.96 Aligned_cols=58 Identities=17% Similarity=0.098 Sum_probs=41.0
Q ss_pred CceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccCCC
Q 038309 58 GQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTT 118 (139)
Q Consensus 58 ~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~~~ 118 (139)
++|..+++.|+.-.+=+.+.....+..+.+ +-.+.+.+.++..+++..+.+..+-+-+
T Consensus 327 ~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (393)
T PRK11195 327 GAGHSIAVQNFNENLAMLLMLGLYSLLVKL---GVPVVAVIVGFGLLVALAMALLWRWHRR 384 (393)
T ss_pred cchhHHHHHhHHHHHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468899999999888888777666655433 5667777777777777777765554433
No 132
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=79.46 E-value=11 Score=31.28 Aligned_cols=78 Identities=13% Similarity=-0.010 Sum_probs=45.5
Q ss_pred HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309 27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS 106 (139)
Q Consensus 27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia 106 (139)
++.-.+.|+.-+..+..-.+++....+ +++|..||+++....+=..+..+.++++.+.+. +-..++...++..+++
T Consensus 101 l~~r~l~Gig~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~-~w~~~~~~~~~~~~~~ 176 (393)
T PRK09705 101 LSSALLGGVGIGIIQAVMPSVIKRRFQ---QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSE-TWYQTLAWWALPAVVA 176 (393)
T ss_pred HHHHHHHHhHHHHHhhhhhHHHHHHcc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 334556677777777777777776654 468999999988776655565555554433322 2233444444444444
Q ss_pred HH
Q 038309 107 GI 108 (139)
Q Consensus 107 ai 108 (139)
.+
T Consensus 177 ~~ 178 (393)
T PRK09705 177 LF 178 (393)
T ss_pred HH
Confidence 33
No 133
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=79.03 E-value=16 Score=29.98 Aligned_cols=52 Identities=10% Similarity=0.132 Sum_probs=29.1
Q ss_pred HHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcch
Q 038309 30 FTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPF 84 (139)
Q Consensus 30 f~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~ 84 (139)
+..+|+..+......++.. ...++ +++|...++.|++..+=+.+.+...+..
T Consensus 316 ~~~~g~g~~~~~~~~~~~~-~~~~~--~~~g~~~~~~~~~~~~~~~~g~~~~~~l 367 (406)
T PRK15402 316 LSLYAFGIGLANAGLYRLT-LFSSD--VSKGTVSAAMGMLSMLIFTVGIELSKHA 367 (406)
T ss_pred HHHHHHHHHHHhhhHHHHH-hhhcc--ccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444443333322 22233 5789999999998876665555444443
No 134
>PRK15075 citrate-proton symporter; Provisional
Probab=78.75 E-value=15 Score=30.87 Aligned_cols=56 Identities=9% Similarity=-0.047 Sum_probs=29.4
Q ss_pred chHHHHHhhchhHhhhhhccCCCCCceeeechh-hhhhhhHHHHHHhhhcchhhhcCCC
Q 038309 34 GIPQAITFSVPFAMASIFSRTSAAGQGLSLGVL-NLAIVVPQMLVSLLSGPFDAVCGGG 91 (139)
Q Consensus 34 GIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIf-N~~IVIPQii~sl~~G~~~~lfgg~ 91 (139)
|+.++......+++.++..|+ +..|..+|+. |+...+=-.+.....|.+.+.+|.+
T Consensus 342 ~~~~g~~~~~~~~~~~e~~p~--~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 342 SFLYGSYNGAMVVALTEVMPA--EVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHHHHHHhhHHHHHHHHCCC--CccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 333443333344667788887 5678888874 4333321223344455555555543
No 135
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=78.70 E-value=9.4 Score=31.30 Aligned_cols=58 Identities=21% Similarity=0.198 Sum_probs=38.2
Q ss_pred CceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccCCC
Q 038309 58 GQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTT 118 (139)
Q Consensus 58 ~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~~~ 118 (139)
+.+..+|..+.+..+-+.+....+|.+.+.+|-+ ..+.+.++..++..++.+ ..|+++
T Consensus 125 ~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~--~~f~~~~~~~~~~~~~~~-~~~~~~ 182 (382)
T PRK11128 125 QIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQ--AILWILTAGVASMLLGQL-LRPTIM 182 (382)
T ss_pred hccCCcchHHHHHHHHHHHHHHHHHHHHHHcChh--HHHHHHHHHHHHHHHHHH-ccCCCC
Confidence 4566788888888899888888888876665533 345566666555554443 445443
No 136
>PRK03545 putative arabinose transporter; Provisional
Probab=78.37 E-value=8.2 Score=31.56 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=38.2
Q ss_pred CCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcc
Q 038309 57 AGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLL 114 (139)
Q Consensus 57 ~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~ 114 (139)
++.|.++|+++..--+=+.+-++.+|.+.+.+|-. ..+...++..+++.++.++..
T Consensus 325 ~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 325 DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLS--SIGYVGAALALAALVWSILIF 380 (390)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh--HHHHHHHHHHHHHHHHHHHHc
Confidence 35678888888877777777777777766554333 566667777777777666544
No 137
>PRK12307 putative sialic acid transporter; Provisional
Probab=77.91 E-value=5.4 Score=32.65 Aligned_cols=53 Identities=9% Similarity=0.046 Sum_probs=38.2
Q ss_pred HHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcch
Q 038309 30 FTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPF 84 (139)
Q Consensus 30 f~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~ 84 (139)
-.+.|+..+..+....+++++..++ +++|..+|+++...-+=.++.....+.+
T Consensus 113 r~l~G~g~g~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~lg~~~~~~l~~~l 165 (426)
T PRK12307 113 RFIVGMGMAGEYACASTYAVESWPK--HLKSKASAFLVSGFGIGNIIAAYFMPSF 165 (426)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhCCH--hHhhHhhhHHHHHHhHHHHHHHHHHHHH
Confidence 4567888888888888888888887 5688899988877666555555444433
No 138
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=77.85 E-value=7.1 Score=33.69 Aligned_cols=54 Identities=9% Similarity=-0.041 Sum_probs=33.6
Q ss_pred CCceeeechhhhhhhhHHHHHHhhhcchhhhcC-CCchhHHHHHHHHHHHHHHHhhhcc
Q 038309 57 AGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCG-GGNMPAFMVGAVAAALSGIVALTLL 114 (139)
Q Consensus 57 ~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfg-g~~~~A~v~ggv~~liaail~~~i~ 114 (139)
+..|..+|+.|..-.+=.++.. .+....+ ++-..+|.+.++.+++++++.+++.
T Consensus 379 ~~~g~~~g~~~~~g~lg~~i~~----~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 379 RSLGVISGLTGAGGNVGAVLTQ----LLFFTGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred hhchhhhhhhhccccHHHHHHH----HHHHhcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 3578888887765433333322 2211111 2235689899999999999988775
No 139
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=77.20 E-value=3 Score=37.86 Aligned_cols=72 Identities=19% Similarity=0.319 Sum_probs=54.4
Q ss_pred HhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCC----CchhHHHHHHHHHHHHHHHhhhcccCCCC
Q 038309 46 AMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGG----GNMPAFMVGAVAAALSGIVALTLLPSTTA 119 (139)
Q Consensus 46 Am~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg----~~~~A~v~ggv~~liaail~~~i~p~~~~ 119 (139)
+++++.-.+ +++|.-||+|+-...+-+|..++...-+.++=++ +=-+.|++-|+..++-++++++.+|..+.
T Consensus 157 ~~lg~wy~~--~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 157 AILGNWYGK--SERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred HHHHhhcCh--hhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 455566666 6799999999999999999988854443332222 22468999999999999999998887665
No 140
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=76.94 E-value=22 Score=29.08 Aligned_cols=55 Identities=15% Similarity=0.150 Sum_probs=39.1
Q ss_pred CCceeeech-hhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhc
Q 038309 57 AGQGLSLGV-LNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTL 113 (139)
Q Consensus 57 ~~~GlyMGI-fN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i 113 (139)
+..+...+. +|+..-+=+.+.++.+|.+.+.+| -..+|.+.+++.++.+++..+.
T Consensus 339 ~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G--~~~~f~~~~~~~~i~~~~~~~~ 394 (396)
T TIGR00882 339 RLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG--FQGAYLVLGCIVLLFTLISVFT 394 (396)
T ss_pred ceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHh
Confidence 344554444 787777788888777788766553 5678888888888888877654
No 141
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=76.60 E-value=3.1 Score=32.95 Aligned_cols=55 Identities=7% Similarity=-0.033 Sum_probs=41.4
Q ss_pred hchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcC
Q 038309 33 LGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCG 89 (139)
Q Consensus 33 lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfg 89 (139)
.|+.......+-.+++++..|+ +++|..+|+.|....+...+..+..|.+.+.+|
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 338 QQMLVQGIWGILPKHLGEYFPT--DQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred HHHHHccchhhHHHHHhhhCCc--chhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444445555777888887 678999999999999999998888888766655
No 142
>PRK10429 melibiose:sodium symporter; Provisional
Probab=75.15 E-value=4.3 Score=34.84 Aligned_cols=64 Identities=11% Similarity=0.130 Sum_probs=48.2
Q ss_pred HHHHHHHhchHHHHHhhchhHhhhhhccCCC-----CCceeeechhhhhhhhHHHHHHhhhcchhhhcC
Q 038309 26 ALAIFTVLGIPQAITFSVPFAMASIFSRTSA-----AGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCG 89 (139)
Q Consensus 26 al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g-----~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfg 89 (139)
.++...+.|+..+....++++|++..++..+ ++.|+++|..+++.=+-+-+.....|.+.++.|
T Consensus 327 ~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G 395 (473)
T PRK10429 327 IVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG 395 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3445566788899999999999999977321 335779999999988888888777777655443
No 143
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=74.90 E-value=6.3 Score=33.91 Aligned_cols=73 Identities=12% Similarity=-0.018 Sum_probs=45.6
Q ss_pred chhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCC--------CchhHHHHHHHHHHHHHHHhhhcc
Q 038309 43 VPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGG--------GNMPAFMVGAVAAALSGIVALTLL 114 (139)
Q Consensus 43 mPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg--------~~~~A~v~ggv~~liaail~~~i~ 114 (139)
+++...++..|. +..|..+|+.|.+--+-.++.+...|.+.+.-+. +-...+.+-++..++++++.+ ..
T Consensus 412 ~~~~~~~E~~p~--~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~-~l 488 (502)
T TIGR00887 412 TTFIVPGEVFPT--RYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTL-LI 488 (502)
T ss_pred hhhhhhhccCch--hHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHhe-Ee
Confidence 456666777777 5688899999988877777766666654433211 112355555556666666654 55
Q ss_pred cCCC
Q 038309 115 PSTT 118 (139)
Q Consensus 115 p~~~ 118 (139)
|+++
T Consensus 489 pEt~ 492 (502)
T TIGR00887 489 PETK 492 (502)
T ss_pred ccCC
Confidence 6544
No 144
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=74.54 E-value=6.5 Score=29.19 Aligned_cols=35 Identities=11% Similarity=0.147 Sum_probs=26.1
Q ss_pred echhhhhhhhHHHHHHhhhcchhhhcCCCchhHHH
Q 038309 63 LGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFM 97 (139)
Q Consensus 63 MGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v 97 (139)
+|.+=+.+|+|-++-..+|-++|+.|+++....+.
T Consensus 45 ~g~IG~~~v~pil~G~~lG~WLD~~~~t~~~~tl~ 79 (100)
T TIGR02230 45 FGLIGWSVAIPTLLGVAVGIWLDRHYPSPFSWTLT 79 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHH
Confidence 78888899999666565666677899998755443
No 145
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.96 E-value=4.3 Score=37.43 Aligned_cols=79 Identities=18% Similarity=0.179 Sum_probs=56.7
Q ss_pred hchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhh
Q 038309 33 LGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALT 112 (139)
Q Consensus 33 lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~ 112 (139)
+|-+.+.+-+ .||++...+++ ..+|-.||+.--||-+--++..-+||++.++ .|...|-++++.++++-+++.-+.
T Consensus 171 vgsA~~~tsg--lamlAd~f~~d-~er~~vmGialgfislG~lvgPpfGGilYe~-~Gk~aPFlVL~~v~Lld~~L~l~v 246 (464)
T KOG3764|consen 171 VGSAFADTSG--LAMLADVFPED-NERGSVMGIALGFISLGVLVGPPFGGILYEF-AGKSAPFLVLAIVLLLDGALQLLV 246 (464)
T ss_pred hhHHHHHhhh--HHHHHHHcccc-hhhhHHHHHHHHHHhccceecCCcccchHhh-cCCcCcHHHHHHHHHHHHHHHHhe
Confidence 3444444443 48888888875 5679999999999999888888888887776 466677777777766666655555
Q ss_pred ccc
Q 038309 113 LLP 115 (139)
Q Consensus 113 i~p 115 (139)
++|
T Consensus 247 i~p 249 (464)
T KOG3764|consen 247 IEP 249 (464)
T ss_pred eCc
Confidence 555
No 146
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=72.90 E-value=17 Score=33.38 Aligned_cols=88 Identities=16% Similarity=0.129 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHH
Q 038309 22 VKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAV 101 (139)
Q Consensus 22 ~~~~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv 101 (139)
.-+.+|.+=..+|=.||+.= +..+..+|+ +|.|.|+|++|++==.--++..+..+.+.+.+|+ ....+..=.+
T Consensus 344 f~i~gll~g~s~G~~qA~SR----Sy~~~lvp~--~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~-~r~g~~~i~v 416 (438)
T COG2270 344 FWILGLLVGTSLGGAQASSR----SYLARLVPK--GKEGRFFGLYALTGRAASFLGPFLVAVITQITGS-SRAGVLSIIV 416 (438)
T ss_pred HHHHHHHHHHhcchHHHHHH----HHHHHhCCC--ccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc-hhhHHHHHHH
Confidence 34455555556666666665 567888998 7999999999998665555555556666677666 4445555556
Q ss_pred HHHHHHHHhhhcccC
Q 038309 102 AAALSGIVALTLLPS 116 (139)
Q Consensus 102 ~~liaail~~~i~p~ 116 (139)
+++++-++.+.++++
T Consensus 417 ll~iGl~~L~~v~~~ 431 (438)
T COG2270 417 LLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHhhHhhEEeecCC
Confidence 666666555555554
No 147
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=72.88 E-value=4.1 Score=35.90 Aligned_cols=88 Identities=11% Similarity=0.094 Sum_probs=55.4
Q ss_pred HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhh---hc---CCC--chhHHHH
Q 038309 27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDA---VC---GGG--NMPAFMV 98 (139)
Q Consensus 27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~---lf---gg~--~~~A~v~ 98 (139)
+..+.+.|+........-++++.+..|+ +.+|..||++|++.-+-+.+.+..+..+.. .. ..+ -...+..
T Consensus 383 i~~~~l~g~Ge~~~~~~g~~~~~~~aP~--~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~ 460 (489)
T PRK10207 383 VLVYLFQSLGELFISALGLAMIAALVPQ--HLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGK 460 (489)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHH
Confidence 3455566666666666667888888888 679999999999988776666554433310 00 011 1345555
Q ss_pred HHHHHHHHHHHhhhcccC
Q 038309 99 GAVAAALSGIVALTLLPS 116 (139)
Q Consensus 99 ggv~~liaail~~~i~p~ 116 (139)
=++.+++.+++.+++.|+
T Consensus 461 ~~~~~~~~~v~~~~~~~~ 478 (489)
T PRK10207 461 IGLVTLGVAVVMALMVPW 478 (489)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666666655543
No 148
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=72.53 E-value=20 Score=31.21 Aligned_cols=69 Identities=13% Similarity=0.148 Sum_probs=46.6
Q ss_pred hHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcC-----CCchhH-HHHHHHHHHHHHHHhhhcccC
Q 038309 45 FAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCG-----GGNMPA-FMVGAVAAALSGIVALTLLPS 116 (139)
Q Consensus 45 yAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfg-----g~~~~A-~v~ggv~~liaail~~~i~p~ 116 (139)
+.+++..+|+ +..|...++++.+--+-+++.+..+|.+.+.+| -++... ++++.++.++.-.+.+ ++|+
T Consensus 373 ~~~~~~~~p~--~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~-llP~ 447 (468)
T TIGR00788 373 LVLLARLCPS--GCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLH-LLPR 447 (468)
T ss_pred HHHHHHhCCC--CceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHH-hCCC
Confidence 4666777776 567877788877777778887877888888778 555554 4445555555555544 7774
No 149
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=70.42 E-value=9.4 Score=35.52 Aligned_cols=89 Identities=8% Similarity=-0.030 Sum_probs=63.4
Q ss_pred HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309 27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS 106 (139)
Q Consensus 27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia 106 (139)
++.-+++|+.-|... -=+..++...|+ ++.+...|++|...-+-.++.++.++. ..-||-.....+-.=.+...+-
T Consensus 119 ~i~R~llGvaEA~~~-A~~syI~~WfP~--kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~ 194 (511)
T TIGR00806 119 QLMEVFYSVTMAARI-AYSSYIFSLVPP--SRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTF 194 (511)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHH
Confidence 344567788888888 666778888898 678999999999999999998887777 4445655555555444445555
Q ss_pred HHHhhhcccCCCC
Q 038309 107 GIVALTLLPSTTA 119 (139)
Q Consensus 107 ail~~~i~p~~~~ 119 (139)
+++.-+.+|++++
T Consensus 195 a~~~a~~LP~~~~ 207 (511)
T TIGR00806 195 SVFLALFLKRPKR 207 (511)
T ss_pred HHHHHHhCCCCch
Confidence 5555556776665
No 150
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=69.65 E-value=5.2 Score=36.18 Aligned_cols=87 Identities=16% Similarity=0.147 Sum_probs=66.3
Q ss_pred HHHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHH
Q 038309 25 GALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAA 104 (139)
Q Consensus 25 ~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~l 104 (139)
.-...-+.+|+--++..++++-++...+.. ++-.-..|+..++-.++.++..-..|.+.+.. ++=-..|.+.|++++
T Consensus 390 ~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~--~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t-g~Y~~~f~~~g~~~~ 466 (509)
T KOG2504|consen 390 GLIVFSILFGFCVGSFSSLTPVILVDLVGL--EKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT-GNYDHAFYFCGLCFL 466 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCh--hhcchHHHHHHHHhHHHHHcCcccceeeeecc-CCeeeehhhcChHHH
Confidence 334455667888888888888788888877 67778889999999988887665556544442 345669999999999
Q ss_pred HHHHHhhhcc
Q 038309 105 LSGIVALTLL 114 (139)
Q Consensus 105 iaail~~~i~ 114 (139)
+++++.+++.
T Consensus 467 ~s~~~~~~~~ 476 (509)
T KOG2504|consen 467 LSAVLLLILR 476 (509)
T ss_pred HHHHHHHHhH
Confidence 9999888665
No 151
>PRK03633 putative MFS family transporter protein; Provisional
Probab=67.89 E-value=24 Score=28.85 Aligned_cols=56 Identities=18% Similarity=0.119 Sum_probs=35.0
Q ss_pred HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhh
Q 038309 29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDA 86 (139)
Q Consensus 29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~ 86 (139)
..++.|+..+.....-.+.+....++ +++|..||+++...-+-+.+..+.++.+.+
T Consensus 100 ~~~l~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 155 (381)
T PRK03633 100 WRFVAGIGCAMIWVVVESALMCSGTS--RNRGRLLAAYMMVYYLGTVLGQLLVSKVST 155 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34555666665544333444555555 467888998888777777776666666543
No 152
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=66.42 E-value=27 Score=30.21 Aligned_cols=55 Identities=11% Similarity=0.065 Sum_probs=38.8
Q ss_pred HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcc
Q 038309 27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGP 83 (139)
Q Consensus 27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~ 83 (139)
...+++.|+.++..+.....++...+|+ ++.|..+|++|++-.+-+.+-....|.
T Consensus 355 ~~~~~l~G~g~g~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~lG~~~G~ai~g~ 409 (495)
T PRK14995 355 WGLMALLGFSAASALLASTSAIMAAAPP--EKAAAAGAIETMAYELGAGLGIAIFGL 409 (495)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcCCH--HhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777776666666677777 678999999999887777665443333
No 153
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=66.27 E-value=32 Score=31.24 Aligned_cols=69 Identities=12% Similarity=0.052 Sum_probs=44.4
Q ss_pred hchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhh
Q 038309 42 SVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALT 112 (139)
Q Consensus 42 SmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~ 112 (139)
....+++++..|+++.+++-..|++...+-+--.+..+..|.+.+-+ +-...|.++++.++++.+..++
T Consensus 119 ~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~--Gw~~~F~iaaigm~l~li~~~~ 187 (493)
T PRK15462 119 SNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY--SWAMGFGLAAVGMIAGLVIFLC 187 (493)
T ss_pred ccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh--ChHHHHHHHHHHHHHHHHHHHH
Confidence 33457788888775445666788887777665555555556654433 3456788888877776665544
No 154
>PRK10133 L-fucose transporter; Provisional
Probab=65.61 E-value=19 Score=30.88 Aligned_cols=54 Identities=2% Similarity=0.029 Sum_probs=31.9
Q ss_pred HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcc
Q 038309 28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGP 83 (139)
Q Consensus 28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~ 83 (139)
+...+.|+..+.....-.+++....++ ++....|++++.+..+-.++..+.+++
T Consensus 122 ~~r~l~G~g~g~~~~~~~~~v~~~~~~--~~~~~~~s~~~~~~~~G~~~g~~~g~~ 175 (438)
T PRK10133 122 VGLFIIAAGLGCLETAANPFVTVLGPE--SSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhCCh--hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666665555665554333 233334788888877777777665544
No 155
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=64.53 E-value=11 Score=34.09 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=53.2
Q ss_pred HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHH
Q 038309 28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSG 107 (139)
Q Consensus 28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaa 107 (139)
++..++|+..|...--=.|++...++++ +-.-.+++.++..-+=+++-...+|.+..++| ...+|.+-+++.+++.
T Consensus 108 ~~~fl~g~~~a~~~PA~~A~ip~lV~~~--~L~~A~al~s~~~niar~iGPalgG~Lva~~G--~~~~f~inalsfl~~i 183 (524)
T PF05977_consen 108 ILTFLLGIGSAFFNPAWQAIIPELVPKE--DLPAANALNSISFNIARIIGPALGGILVAFFG--AAAAFLINALSFLISI 183 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHh--hHHHHHHHHHHHHHHHHhccchHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 3445566666655555567888888873 33333344443333444554456777777655 4567888888888887
Q ss_pred HHhhhcccCCC
Q 038309 108 IVALTLLPSTT 118 (139)
Q Consensus 108 il~~~i~p~~~ 118 (139)
++.+.++++.+
T Consensus 184 ~~l~~~~~~~~ 194 (524)
T PF05977_consen 184 LALLRWKPPPP 194 (524)
T ss_pred HHHHHcccccc
Confidence 77666666543
No 156
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=64.12 E-value=26 Score=29.73 Aligned_cols=50 Identities=6% Similarity=0.050 Sum_probs=26.1
Q ss_pred HHhchHHHHHhh--chhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcch
Q 038309 31 TVLGIPQAITFS--VPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPF 84 (139)
Q Consensus 31 ~~lGIpwAs~lS--mPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~ 84 (139)
.+.|+..+...+ -||. ....++ ++.+-.+++.|.+..+=..+..+.++.+
T Consensus 102 ~l~G~g~g~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~lG~~~g~~i~~~l 153 (410)
T TIGR00885 102 FILTAGLGFLETAANPYI--LVMGPE--STATRRLNLAQSFNPFGSIIGMVVAQQL 153 (410)
T ss_pred HHHHhhHHHHHhhhhHHH--HHHCCH--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555443 3443 334444 3456667777766666555555444443
No 157
>PF13347 MFS_2: MFS/sugar transport protein
Probab=61.90 E-value=29 Score=29.06 Aligned_cols=67 Identities=15% Similarity=0.262 Sum_probs=42.1
Q ss_pred HHHHHHHHHhchHHHHHhhchh-HhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCc
Q 038309 24 VGALAIFTVLGIPQAITFSVPF-AMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGN 92 (139)
Q Consensus 24 ~~al~lf~~lGIpwAs~lSmPy-Am~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~ 92 (139)
+...+...++.+.|... -+|| |+.+...+++++| .--.+.=+++-.+-.++.+...+++.+.+++++
T Consensus 104 ~~~~~~~~l~~~~~t~~-~i~~~al~~~lt~~~~~R-~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~ 171 (428)
T PF13347_consen 104 VWLFVFYILFDIAYTFV-QIPYNALIPELTPDPDER-TRLSSWRMIFSMIGSLLASFLAPILVSWFGGGD 171 (428)
T ss_pred HHHHHHHHHHHHhhhhc-cCchhhcCccccccHhhh-hhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCc
Confidence 34466666667777765 6776 6666776665433 334455555666666666666777667778764
No 158
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=60.84 E-value=33 Score=27.89 Aligned_cols=53 Identities=21% Similarity=0.201 Sum_probs=30.1
Q ss_pred CCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhccc
Q 038309 57 AGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLP 115 (139)
Q Consensus 57 ~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p 115 (139)
+++|...+++|.+.-+-+.+.+...|.. ... ..+.++++..+.+.+..+...+
T Consensus 330 ~~~g~~~~~~~~~~~lg~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~ 382 (394)
T PRK11652 330 YLAGTAGALLGGLQNIGSGLAALLSAML----PQT--GQFSLGLLMTLMGLLILLCWLP 382 (394)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHc----cCC--chHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999987766655554443332 222 2455555555555544444333
No 159
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=60.54 E-value=39 Score=27.88 Aligned_cols=76 Identities=14% Similarity=0.066 Sum_probs=44.7
Q ss_pred HhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhh
Q 038309 32 VLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVAL 111 (139)
Q Consensus 32 ~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~ 111 (139)
..|+..+..++...+++.+..+.+ .++ +++.+.-+-+++.+..+|.+.+.+| ....+.+++++.+++.++.+
T Consensus 316 ~~g~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~~~G~l~~~~G--~~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 316 CGGMGTAAFVALLMALCNRSFSAT--QYA----LLSALASVGRVYVGPTSGYLVEAYG--WPGFYLMTVVIALPGLALLW 387 (402)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666767666652 344 4444444555555555666555555 34667777777777766655
Q ss_pred hccc
Q 038309 112 TLLP 115 (139)
Q Consensus 112 ~i~p 115 (139)
....
T Consensus 388 ~~~~ 391 (402)
T PRK11902 388 LMRG 391 (402)
T ss_pred HHhh
Confidence 4433
No 160
>PRK15075 citrate-proton symporter; Provisional
Probab=57.38 E-value=30 Score=29.01 Aligned_cols=53 Identities=9% Similarity=0.076 Sum_probs=34.5
Q ss_pred HHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcch
Q 038309 30 FTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPF 84 (139)
Q Consensus 30 f~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~ 84 (139)
-.+.|+..+..+..-.+++++..|+ +++|.++|+.+...-+-.++..+.++.+
T Consensus 124 R~l~G~~~g~~~~~~~~~~~e~~p~--~~rg~~~~~~~~~~~~g~~~g~~~g~~l 176 (434)
T PRK15075 124 RLLQGFSAGVELGGVSVYLAEIATP--GRKGFYTSWQSASQQVAVVFAALLGYLL 176 (434)
T ss_pred HHHhhccccccHHHHHHHHHhhCCc--ccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666655544444678888888 6789999998876555555554444443
No 161
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=56.90 E-value=35 Score=28.88 Aligned_cols=88 Identities=20% Similarity=0.206 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHhchHHHHHhhchhHhhhhhccCCC----------CCceeeechhhhhhhhHHHHHHhhhcchhhhcCCC
Q 038309 22 VKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSA----------AGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGG 91 (139)
Q Consensus 22 ~~~~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g----------~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~ 91 (139)
+-+.++++....+.| .=.|+||++..+=..| -|+|+.|+++|.+.|+=--..+- .| +||-+
T Consensus 38 i~~~g~~v~~~~~~p----~f~p~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~gr-fG----lFg~~ 108 (254)
T PF07857_consen 38 IFLVGLVVNLILGFP----PFYPWAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGR-FG----LFGLD 108 (254)
T ss_pred HHHHHHHHHHhcCCC----cceeHHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhh-ce----ecccc
Confidence 334444555555543 2367788886653322 46888888888766543222211 11 44432
Q ss_pred ----chhHHHHHHHHH-HHHHHHhhhcccCCC
Q 038309 92 ----NMPAFMVGAVAA-ALSGIVALTLLPSTT 118 (139)
Q Consensus 92 ----~~~A~v~ggv~~-liaail~~~i~p~~~ 118 (139)
..+.+-+-|+.+ ++++++-.++|++++
T Consensus 109 ~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~ 140 (254)
T PF07857_consen 109 PQVPSSPWLNYIGVALVLVSGIIFSFIKSEEK 140 (254)
T ss_pred ccccchhHHHHHHHHHHHHHHHheeeecCCCC
Confidence 345665555554 555555557888774
No 162
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=56.67 E-value=43 Score=30.29 Aligned_cols=93 Identities=12% Similarity=0.090 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHH--HH
Q 038309 22 VKVGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFM--VG 99 (139)
Q Consensus 22 ~~~~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v--~g 99 (139)
=...+.+.|.++|+.....-.-=.|+++...++ ++++-..++.=.+-.+-.++.++..|.+.+=|..+++..++ ++
T Consensus 88 g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e--~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a 165 (403)
T PF03209_consen 88 GLALAALAFLLYGLGVHASGTSFLALLADLAPE--ERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVA 165 (403)
T ss_pred HHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCH--hhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHH
Confidence 345677788888888877766666899999888 67888889888888888888888777665555666655433 23
Q ss_pred HHHHHHHHHHhhhcccC
Q 038309 100 AVAAALSGIVALTLLPS 116 (139)
Q Consensus 100 gv~~liaail~~~i~p~ 116 (139)
.+.+++.-+..+-+.+|
T Consensus 166 ~i~~~l~~ia~wg~E~r 182 (403)
T PF03209_consen 166 LIALLLNLIALWGQEPR 182 (403)
T ss_pred HHHHHHHHHHHHhcccC
Confidence 33344444444434443
No 163
>PRK10054 putative transporter; Provisional
Probab=56.63 E-value=91 Score=26.01 Aligned_cols=45 Identities=9% Similarity=0.005 Sum_probs=27.8
Q ss_pred HhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCch
Q 038309 46 AMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNM 93 (139)
Q Consensus 46 Am~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~ 93 (139)
+.+.+..|+ +..|.|.|+.|+ ..+=+.+-...+|.+.+.+|....
T Consensus 321 ~~~~~~~p~--~~~~~~~~~~~~-~~~G~~~Gp~~~G~l~~~~g~~~~ 365 (395)
T PRK10054 321 MLIDHIAPP--GMKASYFSAQSL-GWLGAAINPLVSGVILTTLPPWSL 365 (395)
T ss_pred HHHHHhCCc--ccceehHhHHHH-HHHHHHHHHHHHHHHHHHcChhhH
Confidence 344455565 678999998763 334556666667777666644433
No 164
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=56.31 E-value=35 Score=30.59 Aligned_cols=81 Identities=21% Similarity=0.315 Sum_probs=57.4
Q ss_pred HHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHh
Q 038309 31 TVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVA 110 (139)
Q Consensus 31 ~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~ 110 (139)
++.|++.+...++=.++++..+|+ +|+|=.||+.+.-..+=.++-.=.+.++-++|| =..+|..-++..+++-+..
T Consensus 109 ~~~g~a~G~f~~i~~~~a~~lvpp--~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G--WR~~F~~ia~l~ll~~~~~ 184 (394)
T COG2814 109 ALAGLAHGVFWSIAAALAARLVPP--GKRGRALALVFTGLTLATVLGVPLGTFLGQLFG--WRATFLAIAVLALLALLLL 184 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCc--cchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh--HHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999 789999999988777765543213333333332 2346666666666777777
Q ss_pred hhccc
Q 038309 111 LTLLP 115 (139)
Q Consensus 111 ~~i~p 115 (139)
+...|
T Consensus 185 ~~~lP 189 (394)
T COG2814 185 WKLLP 189 (394)
T ss_pred HHhCC
Confidence 77777
No 165
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=55.62 E-value=60 Score=27.54 Aligned_cols=40 Identities=25% Similarity=0.225 Sum_probs=19.1
Q ss_pred HHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccC
Q 038309 74 QMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPS 116 (139)
Q Consensus 74 Qii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~ 116 (139)
..+.++.+|.+. +..+..+ +.+.++..++..++++++.+.
T Consensus 143 ~~ig~~l~g~l~--~~~~~~~-f~~~~~~~~~~~~~~~~~~e~ 182 (418)
T TIGR00889 143 FIAAMWAVSLLD--IELSNIQ-LYITAGSSALLGVFALTLPDI 182 (418)
T ss_pred HHHHHHHHHHhc--ccchhHH-HHHHHHHHHHHHHHHhcCCCC
Confidence 344444444441 1222333 445566566666666555443
No 166
>PRK09848 glucuronide transporter; Provisional
Probab=55.53 E-value=34 Score=28.79 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=14.9
Q ss_pred HHHHHHHHHhchHHHHHhhchhHhhhh
Q 038309 24 VGALAIFTVLGIPQAITFSVPFAMASI 50 (139)
Q Consensus 24 ~~al~lf~~lGIpwAs~lSmPyAm~s~ 50 (139)
+..+..+.+.++.++... +||.-+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~-~~~~al~~ 135 (448)
T PRK09848 110 VYAYLTYMGLGLCYSLVN-IPYGSLAT 135 (448)
T ss_pred HHHHHHHHHHHHHHHHhc-ccHhhhhh
Confidence 344555667777776544 57744333
No 167
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=55.45 E-value=45 Score=30.57 Aligned_cols=93 Identities=16% Similarity=0.196 Sum_probs=66.2
Q ss_pred cchHHHHHHHHHHhchHHHHHhhchhHhhhhhcc-----CCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCch-
Q 038309 20 VGVKVGALAIFTVLGIPQAITFSVPFAMASIFSR-----TSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNM- 93 (139)
Q Consensus 20 ~~~~~~al~lf~~lGIpwAs~lSmPyAm~s~~i~-----~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~- 93 (139)
.+.....++..+..++.-+..+.+|.+|++..++ +-.++.|++-|+.+++.=+-+-+.....|+....+|=+.-
T Consensus 324 ~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv~~~ 403 (467)
T COG2211 324 AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGYVPNV 403 (467)
T ss_pred CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 4455666777788889999999999999998775 2225679999999999999998888777777766553321
Q ss_pred ---h----------HHHHHHHHHHHHHHHhhh
Q 038309 94 ---P----------AFMVGAVAAALSGIVALT 112 (139)
Q Consensus 94 ---~----------A~v~ggv~~liaail~~~ 112 (139)
+ ..++-+++++++++...+
T Consensus 404 ~~Q~~~al~gI~~~~~~~Pa~l~l~~~i~~~~ 435 (467)
T COG2211 404 SAQSASALFGIRFLFIILPALLLLLAAIIIFF 435 (467)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 223335566666666553
No 168
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=52.54 E-value=13 Score=28.71 Aligned_cols=51 Identities=16% Similarity=0.288 Sum_probs=40.0
Q ss_pred HHHHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHH
Q 038309 24 VGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQML 76 (139)
Q Consensus 24 ~~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii 76 (139)
...+..+..+|+.++.....-++++.+..|+ +++|..+|+.|...-+-.++
T Consensus 300 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~~~~i 350 (352)
T PF07690_consen 300 VWLIIALFLIGFGFGIVFPILFSLIQELVPP--EYRGTAFGLFNSIGSLGGII 350 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHCCCHT--CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHH
Confidence 4455567778888888888888999999887 68999999999776555443
No 169
>PRK10429 melibiose:sodium symporter; Provisional
Probab=52.52 E-value=66 Score=27.62 Aligned_cols=35 Identities=11% Similarity=0.332 Sum_probs=18.5
Q ss_pred HHHHHHHHhchHHHHHhhchh-HhhhhhccCCCCCce
Q 038309 25 GALAIFTVLGIPQAITFSVPF-AMASIFSRTSAAGQG 60 (139)
Q Consensus 25 ~al~lf~~lGIpwAs~lSmPy-Am~s~~i~~~g~~~G 60 (139)
..++.+.+.++.+.. +.+|| |+.+...+++++|..
T Consensus 108 ~~~~~~~l~~~~~t~-~~ip~~al~~~lt~~~~eR~~ 143 (473)
T PRK10429 108 FVCVTYILWGMTYTI-MDIPFWSLVPTLTLDKREREQ 143 (473)
T ss_pred HHHHHHHHHHHHHHH-HcchHHhhhHHhCCCHHHHHH
Confidence 344444455555443 45787 666666655444443
No 170
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=52.16 E-value=26 Score=31.60 Aligned_cols=91 Identities=22% Similarity=0.225 Sum_probs=69.6
Q ss_pred HHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHH
Q 038309 30 FTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIV 109 (139)
Q Consensus 30 f~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail 109 (139)
+..+.-+++++.|.=||.++..+.. +..-.++|+.|..+-.=-.+..+.++.+.+. .+-...+.++.++.+++-+.
T Consensus 119 ~~~l~g~~~~~~s~~~a~vadis~~--~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~--~~~a~~f~ia~~~~~~~~~y 194 (463)
T KOG2816|consen 119 LLGLSGGFSAIFSVGFAYVADISSE--EERSSSIGLLSGTFGAGLVIGPALGGYLVKF--LGIALVFLIAAASGILSLLY 194 (463)
T ss_pred hcccccchhhhhhhhhhheeeccch--hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHH
Confidence 5566678899999999999988877 5677888999986655555555555665555 55567888899999999999
Q ss_pred hhhcccCCCCCCCCC
Q 038309 110 ALTLLPSTTADVPPP 124 (139)
Q Consensus 110 ~~~i~p~~~~~~~~~ 124 (139)
+++..|.+..|+.++
T Consensus 195 ~~~~l~Esl~~~~~~ 209 (463)
T KOG2816|consen 195 MLLFLPESLQEKERS 209 (463)
T ss_pred HhhccccccCccccc
Confidence 999888888766655
No 171
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=52.12 E-value=63 Score=26.47 Aligned_cols=47 Identities=17% Similarity=0.080 Sum_probs=28.9
Q ss_pred CCceeeechhhhh-hhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309 57 AGQGLSLGVLNLA-IVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS 106 (139)
Q Consensus 57 ~~~GlyMGIfN~~-IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia 106 (139)
+++|.++|++|.. -.+-+.+.++.+|.+.+.+|. +.+...++..+++
T Consensus 324 ~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~---~~~~~~~~~~~~~ 371 (382)
T PRK11128 324 SEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA---GVFWVMALVALPA 371 (382)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHH
Confidence 5678889988733 344445556677887766642 3455555555444
No 172
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=49.94 E-value=32 Score=31.77 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=47.6
Q ss_pred HhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhh--cchhhhcCCCchhHHHHHHHHHHHHHHHhh-hcccCCCC
Q 038309 46 AMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLS--GPFDAVCGGGNMPAFMVGAVAAALSGIVAL-TLLPSTTA 119 (139)
Q Consensus 46 Am~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~--G~~~~lfgg~~~~A~v~ggv~~liaail~~-~i~p~~~~ 119 (139)
.+++..-+. +..|-+.++.|.+-=+---+..+.. +.+ .+.++-..+|.+.|+.+++-+++++ +.+|+|+.
T Consensus 140 ~~i~~Wfsr--~eRG~~~siWn~shNiGGal~~~~~~la~~--~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs 212 (448)
T COG2271 140 RTITHWFSR--KERGTWWSIWNTSHNIGGALAPLVALLAFF--AFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQS 212 (448)
T ss_pred HHHHHHcCc--cccCceEEEehhhhhcccchHHHHHHHHHH--HhccchhHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 456666677 4689999999987654433333322 332 2334778899999988888887777 57777764
No 173
>PTZ00207 hypothetical protein; Provisional
Probab=49.84 E-value=32 Score=32.08 Aligned_cols=80 Identities=9% Similarity=0.063 Sum_probs=41.1
Q ss_pred HhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhh
Q 038309 32 VLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVAL 111 (139)
Q Consensus 32 ~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~ 111 (139)
+.|+.-+..+......+....|+ +.|..+|+.+.+.-+-..+.+.. ...++.++....|.+-++..++.+++++
T Consensus 129 l~G~G~~~~~~~~~~~i~~~Fp~---~RG~a~Gi~~~~~gLGsaI~~~l---~~~l~~~~~~~~fl~l~vl~~vv~ll~~ 202 (591)
T PTZ00207 129 LMTLGCMLFDLGAVVTVLSVFPS---NRGAVVAIMKTFTGLGSAILGSI---QLAFFSDNTSAYFFFLMSFALVVGILAI 202 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhChh---hhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44444443333334445555554 46999999998876655443221 1112233333455555555555555555
Q ss_pred hcccCC
Q 038309 112 TLLPST 117 (139)
Q Consensus 112 ~i~p~~ 117 (139)
++...|
T Consensus 203 ~~vr~p 208 (591)
T PTZ00207 203 VFMRLP 208 (591)
T ss_pred hheeCC
Confidence 444333
No 174
>PRK11462 putative transporter; Provisional
Probab=49.71 E-value=27 Score=30.25 Aligned_cols=59 Identities=15% Similarity=0.133 Sum_probs=40.3
Q ss_pred HHHHhchHHHHHhhchhHhhhhhccC----CC-CCceeeechhhhhhhhHHHHHHhhhcchhhh
Q 038309 29 IFTVLGIPQAITFSVPFAMASIFSRT----SA-AGQGLSLGVLNLAIVVPQMLVSLLSGPFDAV 87 (139)
Q Consensus 29 lf~~lGIpwAs~lSmPyAm~s~~i~~----~g-~~~GlyMGIfN~~IVIPQii~sl~~G~~~~l 87 (139)
+..+.|+..+....++++|++..++. .| ++.|++.+..+++.=+-+-+.+...|++.++
T Consensus 324 ~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~ 387 (460)
T PRK11462 324 FIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAY 387 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445777778888999999988872 11 3457777777777667776766666665554
No 175
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=49.40 E-value=16 Score=30.65 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=32.3
Q ss_pred CCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHH
Q 038309 57 AGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAA 103 (139)
Q Consensus 57 ~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~ 103 (139)
+..|..+|+.|.+--+-+++.....|.+.+.+|+ -..++.+.++++
T Consensus 365 ~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~-~~~~~~~~~~~~ 410 (412)
T TIGR02332 365 QARAIAIAVINATGNIGSALSPFLIGILKDATGS-FNSGLWFVAALL 410 (412)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhcccccccCCC-CchhHHHHHHHH
Confidence 4578899999999999998887777776655433 344555555444
No 176
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=48.75 E-value=1.7 Score=35.94 Aligned_cols=78 Identities=14% Similarity=0.114 Sum_probs=44.5
Q ss_pred HHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccCCC
Q 038309 39 ITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTT 118 (139)
Q Consensus 39 s~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~~~ 118 (139)
...++++.++++..|. +.+...+|+.+..--+=.++.+.......+..+ ....+.+-+++.+++.+++++..|+.+
T Consensus 365 g~~~~~~~~~~ElfPt--~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~--~~~~~~i~~~~~~i~~i~~~~~lpET~ 440 (451)
T PF00083_consen 365 GWGPLPWIYTAELFPT--KVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG--GWGVFLIFAGVCLIAIIFVYFFLPETK 440 (451)
T ss_pred cccccccccccccccc--ccccccccccccccccccccccccccccccccc--ccccchhhHHHHHHHHhheeEEEeeCC
Confidence 3457888888999888 455666666655433322222222222222222 244555555666777777788888776
Q ss_pred CC
Q 038309 119 AD 120 (139)
Q Consensus 119 ~~ 120 (139)
.+
T Consensus 441 g~ 442 (451)
T PF00083_consen 441 GK 442 (451)
T ss_pred CC
Confidence 43
No 177
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=48.64 E-value=95 Score=24.76 Aligned_cols=52 Identities=17% Similarity=0.011 Sum_probs=29.0
Q ss_pred CCceeeechhhhhh-hhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhh
Q 038309 57 AGQGLSLGVLNLAI-VVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALT 112 (139)
Q Consensus 57 ~~~GlyMGIfN~~I-VIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~ 112 (139)
+..|-.+++.|..- -+.+++.++.++ ....+..+.+...+++.+++.++.++
T Consensus 318 ~~~g~~~~~~~~~~~~~g~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (377)
T PRK11102 318 HMAGTASSLAGTLRFGIGAIVGALLSL----APFTSAWPMVWSMAFCSILSILFYLY 370 (377)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHh----ccCCChHHHHHHHHHHHHHHHHHHHH
Confidence 45777888776542 345554443322 22345566666667777665544443
No 178
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=47.76 E-value=1.7 Score=35.94 Aligned_cols=86 Identities=15% Similarity=0.121 Sum_probs=54.7
Q ss_pred HHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCC-chhHHHHHHHHHHHHHHH
Q 038309 31 TVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGG-NMPAFMVGAVAAALSGIV 109 (139)
Q Consensus 31 ~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~-~~~A~v~ggv~~liaail 109 (139)
...|+.-+..+..=...+++..++ +++|.+..+++.+..+-+++..+.+-.+.+..+++ =...+.++.+..++..+.
T Consensus 110 ~~~G~~~g~~~~~~~~~~~E~~~~--~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~ 187 (451)
T PF00083_consen 110 FLIGFGIGGAYVVSPIYISEIAPP--KHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLL 187 (451)
T ss_pred cccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 445666655555555667888888 67899999999999988888765443332221211 233556666666666665
Q ss_pred hhhcccCCC
Q 038309 110 ALTLLPSTT 118 (139)
Q Consensus 110 ~~~i~p~~~ 118 (139)
.+++.++|+
T Consensus 188 ~~~~pESP~ 196 (451)
T PF00083_consen 188 RFFLPESPR 196 (451)
T ss_pred ccccccccc
Confidence 655555554
No 179
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=45.89 E-value=92 Score=25.52 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhcccCCC
Q 038309 93 MPAFMVGAVAAALSGIVALTLLPSTT 118 (139)
Q Consensus 93 ~~A~v~ggv~~liaail~~~i~p~~~ 118 (139)
.+-++++++..+++.++.++-.|+.+
T Consensus 93 ~~yl~ia~~~~~~~i~~~~~~~p~~~ 118 (310)
T TIGR01272 93 TPYLLLAGALAVLAIIFAFLPLPELQ 118 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCC
Confidence 44555666666666554444444443
No 180
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=40.91 E-value=1e+02 Score=28.31 Aligned_cols=68 Identities=21% Similarity=0.399 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhchHHHHHhhchh-HhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCc
Q 038309 23 KVGALAIFTVLGIPQAITFSVPF-AMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGN 92 (139)
Q Consensus 23 ~~~al~lf~~lGIpwAs~lSmPy-Am~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~ 92 (139)
-+-|.+...++++-...+ -+|| ||.+...++.++|--+ -+.==++-.+=+++.+...+|+.+++++++
T Consensus 112 ~~ya~vtY~l~~l~YT~v-niPy~al~~~iT~d~~ER~~l-~s~R~~~~~~g~~l~~~~~~plv~~~g~~~ 180 (467)
T COG2211 112 LIYALVTYMLLGLGYTLV-NIPYGALGPEITQDPQERASL-TSWRMVFASLGGLLVAVLFPPLVKLFGGGD 180 (467)
T ss_pred hHHHHHHHHHHHHHHHhe-eCchhhcchhhcCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 367777777777665544 3788 5555555554443322 111222334455677777888888888885
No 181
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=40.66 E-value=1.1e+02 Score=25.44 Aligned_cols=73 Identities=10% Similarity=-0.016 Sum_probs=34.4
Q ss_pred hchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHh
Q 038309 33 LGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVA 110 (139)
Q Consensus 33 lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~ 110 (139)
.|+.+......--+.+....++ +++...++.-.+.-+-+.+-+..+|.+.+.+| ....+..+++..++.++.+
T Consensus 315 ~G~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g--~~~~~~~~~~~~~~~~~~~ 387 (394)
T PRK10213 315 WGLTFALVPVGWSTWITRSLAD---QAEKAGSIQVAVIQLANTCGAAIGGYALDNIG--LTSPLMLSGTLMLLTALLV 387 (394)
T ss_pred HHHHHHhhhHHHHHHHHHHCcc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--hhhHHHHHHHHHHHHHHHH
Confidence 3444433333333344555554 23333333333333455566666777655433 3455566665555555443
No 182
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=40.42 E-value=27 Score=28.01 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=26.8
Q ss_pred HhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCC
Q 038309 32 VLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGG 90 (139)
Q Consensus 32 ~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg 90 (139)
+.|+.++..+..-.+.+....++. ++.|.++|+.|.+-.+-..+.....|.+.+.+|+
T Consensus 294 l~g~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~ 351 (355)
T TIGR00896 294 VLGLGQGGAFPLALTLIGLRSRQA-AQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN 351 (355)
T ss_pred HHHHhhhhHhHHHHHHHHHhccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444444433333333222221 3346666666655544455555555555544443
No 183
>PRK10091 MFS transport protein AraJ; Provisional
Probab=40.30 E-value=1.1e+02 Score=25.02 Aligned_cols=44 Identities=7% Similarity=-0.130 Sum_probs=23.8
Q ss_pred hhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHH
Q 038309 65 VLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIV 109 (139)
Q Consensus 65 IfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail 109 (139)
..|....+=+.+-+..+|.+.+..++ -..++.+.++..+++..+
T Consensus 328 ~~~~~~~~g~~~Gp~~~G~l~~~~~~-~~~~~~~~~~~~~~~~~~ 371 (382)
T PRK10091 328 GGQIAFNLGSAIGAYCGGMMLTLGLA-YNYVALPAALLSFAAMSS 371 (382)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHcccC-cchHHHHHHHHHHHHHHH
Confidence 34666677777777777776554333 334444444444443333
No 184
>cd06261 TM_PBP2 Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. F
Probab=39.62 E-value=34 Score=25.15 Aligned_cols=52 Identities=13% Similarity=0.274 Sum_probs=39.9
Q ss_pred HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhh
Q 038309 28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLS 81 (139)
Q Consensus 28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~ 81 (139)
++++.++...+...+++++......+. .....+..+.++...+|.++..+..
T Consensus 5 l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~iP~~~~~~~~ 56 (190)
T cd06261 5 LLLALIATLLALVLGLLLGIILARKRG--KLDRLLRRIIDLLLSLPSLVLGLLL 56 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhch--HHHHHHHHHHHHHhhccHHHHHHHH
Confidence 356677888888888999888876655 2356788999999999998877643
No 185
>PRK09500 potC spermidine/putrescine ABC transporter membrane protein; Reviewed
Probab=38.48 E-value=92 Score=24.78 Aligned_cols=50 Identities=18% Similarity=0.255 Sum_probs=34.8
Q ss_pred HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHh
Q 038309 28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSL 79 (139)
Q Consensus 28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl 79 (139)
+..++++...+...++|.|........ .+......++++...+|.++.++
T Consensus 63 l~~~~~~~~i~~~lg~~~a~~~~~~~~--~~~~~l~~~~~~~~~iP~~v~~~ 112 (256)
T PRK09500 63 LTMAVFSATFATLIGSLTAVALYRYRF--RGKKFVSGMLFVVMMSPDIVMAI 112 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHhhhHHHHHH
Confidence 346667778888888888876665443 23346677778888888887665
No 186
>PRK10952 glycine betaine transporter membrane protein; Provisional
Probab=38.08 E-value=54 Score=28.70 Aligned_cols=65 Identities=17% Similarity=0.278 Sum_probs=43.7
Q ss_pred HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHH
Q 038309 29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVG 99 (139)
Q Consensus 29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~g 99 (139)
..++++...+...++|.+++....+. ..-+...+++++..+|.++..+ ++..+||-+..+.+++.
T Consensus 151 ~l~l~a~lislliGi~lGil~a~~~~---~~~il~~il~~l~siP~fvl~i---~lv~~FG~g~~~~vi~~ 215 (355)
T PRK10952 151 ALVLTALLFCIVIGLPLGIWLARSPR---AAKIIRPLLDAMQTTPAFVYLV---PIVMLFGIGNVPGVVVT 215 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCCcHHHHHHH
Confidence 45667777788888888887776542 2345577888888899777554 34567777766655443
No 187
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=37.32 E-value=1.1e+02 Score=28.18 Aligned_cols=67 Identities=16% Similarity=0.153 Sum_probs=42.4
Q ss_pred hhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCch--hHHHHHHHHHHHHHHHhhhcccCCC
Q 038309 48 ASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNM--PAFMVGAVAAALSGIVALTLLPSTT 118 (139)
Q Consensus 48 ~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~--~A~v~ggv~~liaail~~~i~p~~~ 118 (139)
+++..|+ +-.|..--...+++++=.++....+ .++++|.++. +.+.+..+.+++.-++.+++.++||
T Consensus 141 l~E~sP~--~~RG~~g~~~~~~~~~g~ll~~~~~--l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk 209 (485)
T KOG0569|consen 141 LTEISPK--NLRGALGTLLQIGVVIGILLGQVLG--LPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPK 209 (485)
T ss_pred HhhcChh--hhccHHHHHHHHHHHHHHHHHHHHc--cHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 5677787 4556544444566666655554332 2578899996 4666666666777666666666665
No 188
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=37.29 E-value=50 Score=30.51 Aligned_cols=69 Identities=13% Similarity=0.130 Sum_probs=46.6
Q ss_pred HHHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHH
Q 038309 25 GALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFM 97 (139)
Q Consensus 25 ~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v 97 (139)
....++.++++||-.+ .=.++-|+.+.+ .+||++.|++-+..-+-.++.++..-..-+++|=.....+.
T Consensus 392 ~~~i~~~g~~~P~~~~--~~~tlySkiLgp--~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~ 460 (488)
T KOG2325|consen 392 ISFIVVFGIAFPFIST--ALDTLYSKILGP--RDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIIL 460 (488)
T ss_pred eehhheeccccccccc--hHHHHHHHHhCC--ccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHH
Confidence 3445555666663322 224777888888 68999999999988888888877666656665555444333
No 189
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=34.02 E-value=36 Score=22.63 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHhchHHH
Q 038309 22 VKVGALAIFTVLGIPQA 38 (139)
Q Consensus 22 ~~~~al~lf~~lGIpwA 38 (139)
|..++++++.++||=|-
T Consensus 8 iilg~~ll~~LigiCwC 24 (49)
T PF05624_consen 8 IILGALLLLLLIGICWC 24 (49)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67899999999999884
No 190
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=33.94 E-value=43 Score=30.59 Aligned_cols=67 Identities=27% Similarity=0.315 Sum_probs=40.3
Q ss_pred HhhhhhccCCCCCceeeechh---hhhhhhHHHHHHhhhcchhhhcCC-CchhHHHHHHHHHHHHHHHhhh-cccCCC
Q 038309 46 AMASIFSRTSAAGQGLSLGVL---NLAIVVPQMLVSLLSGPFDAVCGG-GNMPAFMVGAVAAALSGIVALT-LLPSTT 118 (139)
Q Consensus 46 Am~s~~i~~~g~~~GlyMGIf---N~~IVIPQii~sl~~G~~~~lfgg-~~~~A~v~ggv~~liaail~~~-i~p~~~ 118 (139)
+++|..-|+ ++||+.|||+ |+=..+=|++..+ +...++. .--.+..+-.+.+++++++.++ .+|.|.
T Consensus 127 ~~~s~~fP~--~~qG~AlGI~g~GN~G~av~q~~~P~----v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~ 198 (417)
T COG2223 127 PNASFFFPK--EKQGLALGIAGAGNLGVAVAQLVAPL----VAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPE 198 (417)
T ss_pred ccccccCCh--hhhhHHHHHhccccccHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence 445888898 7999999987 5555555554432 1112121 1234556666777777776664 555544
No 191
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=33.57 E-value=60 Score=26.93 Aligned_cols=52 Identities=10% Similarity=-0.091 Sum_probs=34.3
Q ss_pred HHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcc
Q 038309 30 FTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGP 83 (139)
Q Consensus 30 f~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~ 83 (139)
+.+.|+..+..+..-..++....++ ++.|..+|++|++--+-+.+.....|.
T Consensus 355 ~~l~g~g~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~g~~ig~~i~g~ 406 (485)
T TIGR00711 355 QFIRGFGMGCFFMPLTTIALSGLPP--HKIARGSSLSNFTRQLGGSIGTALITT 406 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCH--HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666665554333444455665 678999999999988887776554444
No 192
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=33.55 E-value=1.3e+02 Score=25.32 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=28.6
Q ss_pred ceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 038309 59 QGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTADV 121 (139)
Q Consensus 59 ~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~~~~~~ 121 (139)
.|...++.|...-.=--+.+..+|++... +.+.+-...+.++.++..+...+.++++|++.
T Consensus 345 ~G~a~a~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (413)
T PRK15403 345 KGTVSASLNMVILMVMAVSVEIGRWLWFN--GGRLPFHLLAVVAGVIVVFTLAGLLNRVRQHQ 405 (413)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 46666666654211111112233332222 44455555555555555555556666666553
No 193
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=33.40 E-value=97 Score=27.80 Aligned_cols=57 Identities=23% Similarity=0.202 Sum_probs=39.2
Q ss_pred CCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccCCCC
Q 038309 57 AGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTA 119 (139)
Q Consensus 57 ~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~~~~ 119 (139)
.-++++.+.||+.|-+= +..||...+- .+-.....++++..+++.+++++...+.++
T Consensus 335 ~a~sl~~aa~nlgia~G----A~lGG~v~~~--~g~~~~~~~~a~l~~~a~~~~~~~~~~~~~ 391 (394)
T COG2814 335 LAGSLNVAAFNLGIALG----AALGGLVLDA--LGYAATGWVGAALLLLALLLALLSARKDRR 391 (394)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHh--hchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34577788888877554 4456665544 455666778888888888888876655443
No 194
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=33.13 E-value=2.7e+02 Score=22.63 Aligned_cols=28 Identities=29% Similarity=0.126 Sum_probs=18.5
Q ss_pred chhhhhhhhHHHHHHhhhcchhhhcCCC
Q 038309 64 GVLNLAIVVPQMLVSLLSGPFDAVCGGG 91 (139)
Q Consensus 64 GIfN~~IVIPQii~sl~~G~~~~lfgg~ 91 (139)
|+.+....+-|.+.+..++.+...+|..
T Consensus 326 g~~~~~~~~~~~~g~~~~~~l~~~~g~~ 353 (392)
T PRK10473 326 GVASSTLGIAQVCGSSLWIWLAAVLGIS 353 (392)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5555566678888877776666555544
No 195
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=32.88 E-value=3.3e+02 Score=23.71 Aligned_cols=87 Identities=17% Similarity=0.056 Sum_probs=44.5
Q ss_pred HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHH
Q 038309 28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSG 107 (139)
Q Consensus 28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaa 107 (139)
+++.+.++..|..-..-=++..+..++..+..+.-...+-..+.+=.++.+..+|++.+.++ ....|.+.+++.++..
T Consensus 125 ~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~--~~~~f~~~a~l~ll~~ 202 (468)
T TIGR00788 125 AFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTL--TRILFLITAALLLLQL 202 (468)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcC--cchHHHHHHHHHHHHH
Confidence 34555555555554444577777776322222222222222233555666666676555443 3345666666666665
Q ss_pred HHhhhcccC
Q 038309 108 IVALTLLPS 116 (139)
Q Consensus 108 il~~~i~p~ 116 (139)
+..+++.++
T Consensus 203 ~~~~~~~E~ 211 (468)
T TIGR00788 203 FVSNLSKER 211 (468)
T ss_pred HHHHhcccc
Confidence 555555553
No 196
>KOG3188 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.90 E-value=20 Score=30.69 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=15.2
Q ss_pred hhhhhhhHHHHHHhhhcchhhhcCC
Q 038309 66 LNLAIVVPQMLVSLLSGPFDAVCGG 90 (139)
Q Consensus 66 fN~~IVIPQii~sl~~G~~~~lfgg 90 (139)
=|+.-||||++. +|++..+|.|
T Consensus 114 gNm~~viPqtii---~~WiN~fFSG 135 (246)
T KOG3188|consen 114 GNMANVIPQTII---GGWINWFFSG 135 (246)
T ss_pred hhHHHHhHHHHH---HHHHHHHHHH
Confidence 389999999984 4454445544
No 197
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=31.23 E-value=95 Score=26.74 Aligned_cols=50 Identities=18% Similarity=0.137 Sum_probs=36.4
Q ss_pred HHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhc
Q 038309 31 TVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSG 82 (139)
Q Consensus 31 ~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G 82 (139)
.+.|+.-+..+++.|.++++.+++ +.++..+.+.-++-+.|.+.-...+.
T Consensus 179 fl~G~~~~~~~~~~~~~~~E~~~~--~~R~~~~~~~~~~~~~~~~~~~~~a~ 228 (521)
T KOG0255|consen 179 FLSGFFGSGPLTVGFGLVAEIVSP--KQRGLALTLGGFFFVGGLMLPAGAAY 228 (521)
T ss_pred HHHHhhccchhHHhHhhheeecCc--chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344778888899999999999998 56777777755666677666554333
No 198
>PRK15111 antimicrobial peptide ABC transporter permease SapC; Provisional
Probab=30.98 E-value=86 Score=26.12 Aligned_cols=60 Identities=10% Similarity=0.079 Sum_probs=43.1
Q ss_pred HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCc
Q 038309 28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGN 92 (139)
Q Consensus 28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~ 92 (139)
+.+.+++...+...+++.++++.+... ....+.+.+.+++..+|.++..+.. ..+||.+.
T Consensus 99 L~ial~~~~la~viG~~lGi~ag~~~~--~~d~~l~~~~d~l~siP~l~l~ill---~~~~G~~~ 158 (296)
T PRK15111 99 VGGAFVVTLAATLCGLVLGVFAGATHG--LRSAVLNHILDTLLSIPSLLLAIIV---VAFAGPSL 158 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc--hHHHHHHHHHHHHHHhHHHHHHHHH---HHHHcccH
Confidence 345567788889999999998888654 2334678999999999999876532 23455443
No 199
>TIGR00901 2A0125 AmpG-related permease.
Probab=30.98 E-value=49 Score=26.39 Aligned_cols=41 Identities=12% Similarity=0.066 Sum_probs=29.3
Q ss_pred HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhh
Q 038309 27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLA 69 (139)
Q Consensus 27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~ 69 (139)
+...++.++..+..+..-.+++++..|+ +.+|-++|+++..
T Consensus 313 ~~~~~l~~~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~ 353 (356)
T TIGR00901 313 FLTITLEAVTGGLGTVAFVAFLSKLSNP--KFGATQMALLSSL 353 (356)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcCC--CccHHHHHHHHHH
Confidence 3334445666666666667888898888 7899999988753
No 200
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=30.35 E-value=91 Score=17.56 Aligned_cols=18 Identities=6% Similarity=-0.034 Sum_probs=11.0
Q ss_pred CCCchhHHHHHHHHHHHH
Q 038309 89 GGGNMPAFMVGAVAAALS 106 (139)
Q Consensus 89 gg~~~~A~v~ggv~~lia 106 (139)
|+.+.+.+.+.|+.++..
T Consensus 6 G~~~~~~~~~~G~~l~~~ 23 (34)
T TIGR01167 6 GESGNSLLLLLGLLLLGL 23 (34)
T ss_pred CCcccHHHHHHHHHHHHH
Confidence 445667777777744444
No 201
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=30.21 E-value=1.8e+02 Score=25.39 Aligned_cols=71 Identities=28% Similarity=0.272 Sum_probs=47.8
Q ss_pred hhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccC
Q 038309 44 PFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPS 116 (139)
Q Consensus 44 PyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~ 116 (139)
-=|++++..+.+.+..|--......+..+=.++.++.+|+..+-+ +.-..|.+.+++.++..+.++++.++
T Consensus 107 aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~--~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 107 ADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF--GPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred hhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC--CCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 346777777654444444455666677777888888888876543 34456777788878887777777774
No 202
>TIGR01097 PhnE phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context).
Probab=29.96 E-value=1e+02 Score=24.43 Aligned_cols=66 Identities=24% Similarity=0.356 Sum_probs=45.1
Q ss_pred HHHHHHHhchHHHHHhhchhHhhhhhccCCCC-CceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchh
Q 038309 26 ALAIFTVLGIPQAITFSVPFAMASIFSRTSAA-GQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMP 94 (139)
Q Consensus 26 al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~-~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~ 94 (139)
--+.++.+|...+...++|.++++......+. ...+.-.++++.-.+|-++..+ .+..+||.+..+
T Consensus 62 ~Tl~~a~~~~~i~~~igl~l~~l~~~~~~~~~~~~~~~~~~~~~~r~iP~iv~a~---i~~~~~g~g~~~ 128 (250)
T TIGR01097 62 ETLAMAILGTVLAAILALPLALLAARNITPSPWLSGLARLLLNFLRAIPELVWAL---IFVAAVGLGPFA 128 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHcchHHHHHH---HHHHHHCCChHH
Confidence 34567888999999999999998776422101 2456677888888888888765 333466665543
No 203
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=29.53 E-value=1.8e+02 Score=26.84 Aligned_cols=75 Identities=16% Similarity=0.223 Sum_probs=54.1
Q ss_pred hhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccCCCCC
Q 038309 41 FSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTAD 120 (139)
Q Consensus 41 lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~~~~~ 120 (139)
-.+||=+.++..|+ +-+...+.+-...--+=..++.+...++.+.+|+ +.|++=.+..++.++..++..|+.|-+
T Consensus 386 gpi~~fi~aELf~~--~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~---~~filF~i~~~~~~i~~~~~lPETkgr 460 (485)
T KOG0569|consen 386 GPIPWFIGAELFPQ--SARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP---YVFILFVIPLAIFLIYLYRYLPETKGR 460 (485)
T ss_pred CchhHHHHHHhCCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---hhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence 36888899999988 4455555554444444445556667777788888 777777888888888888899988743
No 204
>COG3402 Uncharacterized conserved protein [Function unknown]
Probab=27.83 E-value=85 Score=25.43 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=31.9
Q ss_pred HhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccC
Q 038309 78 SLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPS 116 (139)
Q Consensus 78 sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~ 116 (139)
+...+.+...++.++-....-+++..+++++..+++.|+
T Consensus 32 av~~~~~~~~~~~~~~w~~~a~~av~l~~~vv~l~iiP~ 70 (161)
T COG3402 32 AVAAGVLLYFVGLDPNWSSVAAVAVILLAAVVTLFIIPQ 70 (161)
T ss_pred HHHHHHHHheeccCCccHHHHHHHHHHHHHHHHhhhhhH
Confidence 446677777888888888888888888899999999984
No 205
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.60 E-value=1.9e+02 Score=22.40 Aligned_cols=40 Identities=15% Similarity=0.156 Sum_probs=21.9
Q ss_pred hHHHHHHhhhcc-hhhhcCCCchhHHHHHHHHHHHHHHHhhh
Q 038309 72 VPQMLVSLLSGP-FDAVCGGGNMPAFMVGAVAAALSGIVALT 112 (139)
Q Consensus 72 IPQii~sl~~G~-~~~lfgg~~~~A~v~ggv~~liaail~~~ 112 (139)
|--+++.++.|+ .|++||-.+.-+++ .=+.=+.++++.++
T Consensus 53 IsGilVGa~iG~llD~~agTsPwglIv-~lllGf~AG~lnv~ 93 (116)
T COG5336 53 ISGILVGAGIGWLLDKFAGTSPWGLIV-FLLLGFGAGVLNVL 93 (116)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHH-HHHHHHHHHHHHHH
Confidence 334667776555 55677766655443 33333455555554
No 206
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=25.42 E-value=1.3e+02 Score=26.19 Aligned_cols=64 Identities=16% Similarity=0.138 Sum_probs=39.0
Q ss_pred hhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhccc
Q 038309 48 ASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLP 115 (139)
Q Consensus 48 ~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p 115 (139)
.++..|+ +-+|.+...+.+++++=+++.-+.+....+. ..+=...+.++.+..++-.++ ++..|
T Consensus 167 ~sEiap~--~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~-~~~Wr~~~~~~~i~~~~~~~~-~~~~p 230 (513)
T KOG0254|consen 167 ISEIAPA--HIRGTLVSLYQLFITIGILLGYCINYGTSKV-YAGWRIPLGLALIPAVILALG-MLFLP 230 (513)
T ss_pred HhhcCCh--hhhHHHHHHHHHHHHHHHHHHHHHhhhhccC-CccHHHHHHHHHHHHHHHHHH-HHhCC
Confidence 3666666 5789999999998888777763322222111 001124666777777777777 44454
No 207
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=24.28 E-value=2.3e+02 Score=26.81 Aligned_cols=82 Identities=12% Similarity=0.204 Sum_probs=46.1
Q ss_pred HHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCC--CchhHHHHHHHHHHHHH
Q 038309 30 FTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGG--GNMPAFMVGAVAAALSG 107 (139)
Q Consensus 30 f~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg--~~~~A~v~ggv~~liaa 107 (139)
+++.|+.-+..... +..+++.+|.+ .++++.++. .+|-++....++.+-+.+.. +=.+.+.+..+...++.
T Consensus 138 ~~l~GvgaG~~~~~-~~~isEl~p~k--~R~~~~~~~----~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~ 210 (599)
T PF06609_consen 138 MVLYGVGAGVQELA-ALAISELVPNK--WRGLGLAIA----SIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIAL 210 (599)
T ss_pred HHHHHHhhHHHHHH-HHHHHHhcccc--hhhhHhHHH----HHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHH
Confidence 34445555555555 44478988874 444444433 45655555455566554443 33667777777766666
Q ss_pred HHhh-hcccCCC
Q 038309 108 IVAL-TLLPSTT 118 (139)
Q Consensus 108 il~~-~i~p~~~ 118 (139)
++.+ +-.|.++
T Consensus 211 vl~~~fY~PP~~ 222 (599)
T PF06609_consen 211 VLIFFFYFPPPR 222 (599)
T ss_pred HHHHHHhCCCch
Confidence 5544 4455443
No 208
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=22.38 E-value=2.2e+02 Score=25.83 Aligned_cols=90 Identities=13% Similarity=0.145 Sum_probs=51.5
Q ss_pred HHHHHHHHHhchHHHHHhhchhHhhhh-hccCCC--------------CCceeeechhhhh-----hhhHHHHHHhhhcc
Q 038309 24 VGALAIFTVLGIPQAITFSVPFAMASI-FSRTSA--------------AGQGLSLGVLNLA-----IVVPQMLVSLLSGP 83 (139)
Q Consensus 24 ~~al~lf~~lGIpwAs~lSmPyAm~s~-~i~~~g--------------~~~GlyMGIfN~~-----IVIPQii~sl~~G~ 83 (139)
...+.+|+..|+.=++++-+.=.+-.. .....+ .+.|...|+-+.. ..+|.++ |.
T Consensus 350 ~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~-----g~ 424 (462)
T PRK15034 350 AVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAF-----GM 424 (462)
T ss_pred HHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHH-----HH
Confidence 444556677788888887443222221 000000 1356666665432 2344333 22
Q ss_pred hhhhcCCCchhHHHHHHHHHHHHHHHhhhcccCCCC
Q 038309 84 FDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTA 119 (139)
Q Consensus 84 ~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~~~~ 119 (139)
..+.+ |...++|..-.++-+++.+++++.--|++.
T Consensus 425 ~~~~~-g~~~~~~~~~~~~~~~~~~~~w~~y~r~~~ 459 (462)
T PRK15034 425 SLNMT-GSPVGAMKVFLIFYIVCVLLTWLVYGRRKF 459 (462)
T ss_pred HHHHc-CCcHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 23343 557888999999999999999987776653
No 209
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=22.29 E-value=1e+02 Score=28.59 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=30.4
Q ss_pred hhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHH
Q 038309 41 FSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGA 100 (139)
Q Consensus 41 lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~gg 100 (139)
.+|.||.++..-|. +|+|-. +++.++.+++||-=....|-...-+.++++
T Consensus 38 ~ama~a~~aGv~p~----~GLyas------~i~~~v~alfGgs~~~i~GPt~a~~~v~a~ 87 (554)
T COG0659 38 LAMAFAIAAGVPPE----AGLYAS------IVAGIIYALFGGSRGLISGPTGAFAVVLAA 87 (554)
T ss_pred HHHHHHHHcCCCHH----HHHHHH------HHHHHHHHHHcCCccceeccchhhHHHHHH
Confidence 57778887775443 788865 567788888666644454544333444333
No 210
>TIGR02790 nickel_nikC nickel ABC transporter, permease subunit NikC. This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases.
Probab=21.91 E-value=1.5e+02 Score=23.98 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=38.0
Q ss_pred HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhh
Q 038309 28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLL 80 (139)
Q Consensus 28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~ 80 (139)
+.++.++...+...++|+++++.+... .-..+-+.+.|++..+|.++..+.
T Consensus 65 L~ia~~~~~i~~~ig~~lG~~ag~~~~--~~~~~~~~~~~~~~~iP~l~l~l~ 115 (258)
T TIGR02790 65 LGSALLVLGLVLTIGLLIGGLAGYIGG--RVDEAIMRVCDVFLSFPTIILSLA 115 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCc--HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 345667777788888899888877532 223566788999999999988763
No 211
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=21.54 E-value=40 Score=26.41 Aligned_cols=52 Identities=12% Similarity=0.071 Sum_probs=34.2
Q ss_pred CCceeeechhhhhhhhHHHHHHhhhcchhh----hcCCC------chhHHHHHHHHHHHHHHHhhhcc
Q 038309 57 AGQGLSLGVLNLAIVVPQMLVSLLSGPFDA----VCGGG------NMPAFMVGAVAAALSGIVALTLL 114 (139)
Q Consensus 57 ~~~GlyMGIfN~~IVIPQii~sl~~G~~~~----lfgg~------~~~A~v~ggv~~liaail~~~i~ 114 (139)
.+--.|- +++|-=++.+..|.... -|+.+ --+++.-.|..+++++.+||...
T Consensus 44 ~e~s~Yr------ci~pfG~vili~GvvvT~vays~n~~~si~~~~G~vlLs~GLmlL~~~alcW~~~ 105 (129)
T PF15099_consen 44 AEWSCYR------CIMPFGVVILIAGVVVTAVAYSFNSHGSIISIFGPVLLSLGLMLLACSALCWKPI 105 (129)
T ss_pred CCceEEE------EEEEehHHHHHHhhHhheeeEeecCCcchhhhehHHHHHHHHHHHHhhhheehhh
Confidence 3445565 67777677777776552 44422 23688889999999997777433
No 212
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=21.30 E-value=1.5e+02 Score=21.53 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 038309 95 AFMVGAVAAALSGIVALTL 113 (139)
Q Consensus 95 A~v~ggv~~liaail~~~i 113 (139)
+++++.++++.|.+.+--.
T Consensus 10 ~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 10 GLLLAALLLISSEVAAREL 28 (95)
T ss_pred HHHHHHHHHHHhhhhhHHh
Confidence 4556666666666666544
No 213
>PRK10913 dipeptide transporter; Provisional
Probab=21.26 E-value=1.4e+02 Score=25.00 Aligned_cols=50 Identities=12% Similarity=0.317 Sum_probs=37.6
Q ss_pred HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhh
Q 038309 29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLL 80 (139)
Q Consensus 29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~ 80 (139)
.++++....+...++|+++.+.+... .-.-+-|.+.+++..+|.++..+.
T Consensus 103 ~i~~~a~~l~~~iG~~lG~~ag~~~~--~~d~~l~~i~dv~~siP~~~l~ll 152 (300)
T PRK10913 103 LVGCLVVVLSLVMGVILGLIAGYFGG--LVDNIIMRVVDIMLALPSLLLALV 152 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44566667778888888888887643 234567899999999999987763
No 214
>PRK10133 L-fucose transporter; Provisional
Probab=21.24 E-value=3.7e+02 Score=23.05 Aligned_cols=81 Identities=16% Similarity=0.130 Sum_probs=44.6
Q ss_pred HHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHH
Q 038309 26 ALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAAL 105 (139)
Q Consensus 26 al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~li 105 (139)
++..+.++|+..+.++..=|++..+..++ ..|...+++++..+- -.+.+...|.+.+.+| +-..++.+-.++.+.
T Consensus 350 ~~~~~~l~glg~~~i~P~~~s~a~~~~~~---~~~~as~l~~~~~~g-~~~~~~i~G~l~~~~g-~~~~~~~v~~~~~~~ 424 (438)
T PRK10133 350 GLIALTLCSAFMSIQYPTIFSLGIKNLGQ---DTKYGSSFIVMTIIG-GGIVTPVMGFVSDAAG-NIPTAELIPALCFAV 424 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccch---hhccchhHHhHHhcc-chHHHHHHHHHHHhcc-chHHHHHHHHHHHHH
Confidence 35567778888888888777776666544 356677777654321 1222222333333333 233566655555555
Q ss_pred HHHHhh
Q 038309 106 SGIVAL 111 (139)
Q Consensus 106 aail~~ 111 (139)
..+.+.
T Consensus 425 ~~~~~~ 430 (438)
T PRK10133 425 IFIFAR 430 (438)
T ss_pred HHHHHH
Confidence 544443
No 215
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=21.03 E-value=1.7e+02 Score=22.02 Aligned_cols=31 Identities=10% Similarity=0.169 Sum_probs=25.3
Q ss_pred hhcCCCchhHHHHHHHHHHHHHHHhhhcccC
Q 038309 86 AVCGGGNMPAFMVGAVAAALSGIVALTLLPS 116 (139)
Q Consensus 86 ~lfgg~~~~A~v~ggv~~liaail~~~i~p~ 116 (139)
.+|-+++....-..|+++++++++.+-...+
T Consensus 76 ~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 76 VLLFDESLSLMKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 4567899999999999999999988855443
No 216
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=20.68 E-value=1.8e+02 Score=26.63 Aligned_cols=80 Identities=13% Similarity=0.099 Sum_probs=55.8
Q ss_pred HHHHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcch-hhhcCCCchhHHHHHHHH
Q 038309 24 VGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPF-DAVCGGGNMPAFMVGAVA 102 (139)
Q Consensus 24 ~~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~-~~lfgg~~~~A~v~ggv~ 102 (139)
++-+++=..+|+=|-+++ -|=+.++|++ .+ -+|.|+|-|==.+.+-++--.. ++-|--+.-++|-++.++
T Consensus 349 i~F~~~E~cvGlfwPSim----kmRsqyIPEe--ar---stimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~ 419 (454)
T KOG4332|consen 349 IGFCLFEACVGLFWPSIM----KMRSQYIPEE--AR---STIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAF 419 (454)
T ss_pred HHHHHHHHHHhhcchHHH----HHHHhhCCHH--HH---hhhhhheechhhHhhhhhheecccccCccccchhhhhhHHH
Confidence 444444577899999998 5678999984 34 4788888765555555433221 234555667899999999
Q ss_pred HHHHHHHhhh
Q 038309 103 AALSGIVALT 112 (139)
Q Consensus 103 ~liaail~~~ 112 (139)
++.+.++...
T Consensus 420 ~~~a~i~~~~ 429 (454)
T KOG4332|consen 420 LFVASILQRR 429 (454)
T ss_pred HHHHHHHHHH
Confidence 9999887764
Done!