Query 038309
Match_columns 139
No_of_seqs 117 out of 207
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 16:35:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038309.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038309hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 96.9 0.00039 1.3E-08 54.3 2.4 88 24-115 347-435 (451)
2 4aps_A DI-OR tripeptide H+ sym 96.9 0.0043 1.5E-07 49.6 8.3 90 25-119 388-477 (491)
3 2gfp_A EMRD, multidrug resista 96.6 0.0037 1.3E-07 48.2 5.9 89 27-119 92-180 (375)
4 1pw4_A Glycerol-3-phosphate tr 96.5 0.0027 9.1E-08 49.6 4.8 88 27-117 123-210 (451)
5 3o7q_A L-fucose-proton symport 96.5 0.011 3.9E-07 46.0 8.2 58 26-85 120-177 (438)
6 2xut_A Proton/peptide symporte 96.5 0.0033 1.1E-07 50.8 5.0 91 26-118 408-507 (524)
7 4aps_A DI-OR tripeptide H+ sym 96.3 0.0094 3.2E-07 47.6 6.9 89 28-118 113-201 (491)
8 2cfq_A Lactose permease; trans 95.3 0.021 7.3E-07 45.6 5.1 72 45-120 334-406 (417)
9 2xut_A Proton/peptide symporte 94.8 0.11 3.6E-06 42.0 7.8 86 27-116 113-201 (524)
10 4gc0_A D-xylose-proton symport 89.8 0.75 2.6E-05 36.4 6.4 75 42-118 389-467 (491)
11 3o7q_A L-fucose-proton symport 89.8 0.45 1.5E-05 36.9 4.9 81 26-111 350-430 (438)
12 4gc0_A D-xylose-proton symport 88.2 0.41 1.4E-05 38.0 3.7 86 29-116 132-223 (491)
13 2gfp_A EMRD, multidrug resista 59.5 2 6.9E-05 32.8 0.1 57 26-85 294-350 (375)
14 2cfq_A Lactose permease; trans 53.8 1.6 5.5E-05 34.6 -1.3 57 58-117 135-191 (417)
15 3d31_C Sulfate/molybdate ABC t 41.9 59 0.002 25.0 6.0 50 28-79 88-137 (295)
16 2onk_C Molybdate/tungstate ABC 25.1 1.6E+02 0.0055 22.4 5.9 50 28-79 78-127 (284)
17 3tui_A D-methionine transport 24.5 76 0.0026 22.3 3.7 63 28-90 17-85 (217)
18 2l2t_A Receptor tyrosine-prote 21.8 1E+02 0.0035 18.9 3.4 22 95-116 14-37 (44)
19 3rlf_G Maltose transport syste 20.5 37 0.0013 25.8 1.4 50 28-79 89-138 (296)
20 2ks1_B Epidermal growth factor 20.0 1.6E+02 0.0054 17.9 4.0 25 92-116 12-38 (44)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=96.89 E-value=0.00039 Score=54.35 Aligned_cols=88 Identities=16% Similarity=0.069 Sum_probs=69.0
Q ss_pred HHHHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhh-HHHHHHhhhcchhhhcCCCchhHHHHHHHH
Q 038309 24 VGALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVV-PQMLVSLLSGPFDAVCGGGNMPAFMVGAVA 102 (139)
Q Consensus 24 ~~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVI-PQii~sl~~G~~~~lfgg~~~~A~v~ggv~ 102 (139)
....+.+.++|+..+.....-++++.+..|+ +.+|..+|++|.+.-+ -+.+.....|.+.+.+| -...+.+.+++
T Consensus 347 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~ 422 (451)
T 1pw4_A 347 TVDMICMIVIGFLIYGPVMLIGLHALELAPK--KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG--WDGGFMVMIGG 422 (451)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC--SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHhch--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHH
Confidence 3445556677887777777778888998887 6799999999999999 99999888887766544 55678888888
Q ss_pred HHHHHHHhhhccc
Q 038309 103 AALSGIVALTLLP 115 (139)
Q Consensus 103 ~liaail~~~i~p 115 (139)
.+++.++.+++..
T Consensus 423 ~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 423 SILAVILLIVVMI 435 (451)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888888776543
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=96.86 E-value=0.0043 Score=49.58 Aligned_cols=90 Identities=13% Similarity=0.134 Sum_probs=65.0
Q ss_pred HHHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHH
Q 038309 25 GALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAA 104 (139)
Q Consensus 25 ~al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~l 104 (139)
.....+.+.|+..+.....-++++.+..|+ +.+|..+|+.|.+..+-..+.+...|.+++. +....+.+.++..+
T Consensus 388 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~---~~~~~~~~~~~~~~ 462 (491)
T 4aps_A 388 WLVGSWALVILGEMLISPVGLSVTTKLAPK--AFNSQMMSMWFLSSSVGSALNAQLVTLYNAK---SEVAYFSYFGLGSV 462 (491)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHHHHTTT--TCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS---STTHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHH
Confidence 344556677888888777888999999988 6789999999999999988888777776543 34456777777777
Q ss_pred HHHHHhhhcccCCCC
Q 038309 105 LSGIVALTLLPSTTA 119 (139)
Q Consensus 105 iaail~~~i~p~~~~ 119 (139)
+++++.++..++.++
T Consensus 463 ~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 463 VLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHH
Confidence 888887777665543
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=96.59 E-value=0.0037 Score=48.17 Aligned_cols=89 Identities=16% Similarity=0.206 Sum_probs=66.0
Q ss_pred HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309 27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS 106 (139)
Q Consensus 27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia 106 (139)
++...+.|+..+.......+++++..++ ++++..+|+.+...-+-.++....++.+.+.++ -...+.+.++..+++
T Consensus 92 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~ 167 (375)
T 2gfp_A 92 IAASAMQGMGTGVGGVMARTLPRDLYER--TQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN--WRACYLFLLVLCAGV 167 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT--SSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc--HHHHHHHHHHHHHHH
Confidence 3445567888888888888999999887 678999999999999888888877777654432 345677777777777
Q ss_pred HHHhhhcccCCCC
Q 038309 107 GIVALTLLPSTTA 119 (139)
Q Consensus 107 ail~~~i~p~~~~ 119 (139)
.++.++..|++++
T Consensus 168 ~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 168 TFSMARWMPETRP 180 (375)
T ss_dssp HCCCCCSSCCCST
T ss_pred HHHHHHHCcccCC
Confidence 7756655555443
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=96.54 E-value=0.0027 Score=49.61 Aligned_cols=88 Identities=18% Similarity=0.067 Sum_probs=64.0
Q ss_pred HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHH
Q 038309 27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALS 106 (139)
Q Consensus 27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~lia 106 (139)
++..++.|+..+..+..-.+++++..++ +++|.++|+.+....+-+++..+.++.+.+.+| +-...+.+.++..++.
T Consensus 123 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~w~~~f~~~~~~~~~~ 199 (451)
T 1pw4_A 123 FVLLFLCGWFQGMGWPPCGRTMVHWWSQ--KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN-DWHAALYMPAFCAILV 199 (451)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTTCTT--THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC-CSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHCCc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHH
Confidence 3445677888888887788899999887 679999999999998888888777777555554 2344566667777766
Q ss_pred HHHhhhcccCC
Q 038309 107 GIVALTLLPST 117 (139)
Q Consensus 107 ail~~~i~p~~ 117 (139)
+++.++..|++
T Consensus 200 ~~~~~~~~~~~ 210 (451)
T 1pw4_A 200 ALFAFAMMRDT 210 (451)
T ss_dssp HHHHHHHCCCS
T ss_pred HHHHHhhccCC
Confidence 66665544443
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=96.51 E-value=0.011 Score=45.99 Aligned_cols=58 Identities=3% Similarity=0.027 Sum_probs=49.4
Q ss_pred HHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchh
Q 038309 26 ALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFD 85 (139)
Q Consensus 26 al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~ 85 (139)
-++...+.|+..+.....-.+++++..++ ++.|..+|+++.+.-+-+++..+.++.+.
T Consensus 120 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 120 FLVGLFIIAAGLGCLETAANPFVTVLGPE--SSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCS--TTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHhhHHHhhhhHHHHHHHHcCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888888888999999988 67899999999999999999988888776
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=96.45 E-value=0.0033 Score=50.85 Aligned_cols=91 Identities=15% Similarity=0.084 Sum_probs=60.5
Q ss_pred HHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCC---------CchhHH
Q 038309 26 ALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGG---------GNMPAF 96 (139)
Q Consensus 26 al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg---------~~~~A~ 96 (139)
.++.++++|+..+.....-++++++..|+ +.+|..+|++|.+.-+-+.+.+...|.+.+..+. .....+
T Consensus 408 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 485 (524)
T 2xut_A 408 QILPYALLTFGEVLVSATGLEFAYSQAPK--AMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQM 485 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHCCT--TCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHH
Confidence 34456667777777777778888888887 6799999999999999988888777765542110 012236
Q ss_pred HHHHHHHHHHHHHhhhcccCCC
Q 038309 97 MVGAVAAALSGIVALTLLPSTT 118 (139)
Q Consensus 97 v~ggv~~liaail~~~i~p~~~ 118 (139)
.+.++..++++++.+++.++.+
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~ 507 (524)
T 2xut_A 486 FFFAGFAILAAIVFALYARSYQ 507 (524)
T ss_dssp HHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 6677777777777776666544
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=96.33 E-value=0.0094 Score=47.63 Aligned_cols=89 Identities=11% Similarity=0.107 Sum_probs=66.2
Q ss_pred HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHH
Q 038309 28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSG 107 (139)
Q Consensus 28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaa 107 (139)
+...+.|+..+.....-.+++++..+++..+.|..+|++|....+-+++..+.+|.+.+.+| -...+.+.++..+++.
T Consensus 113 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--~~~~f~~~~~~~~~~~ 190 (491)
T 4aps_A 113 GSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG--YHVAFSLAAIGMFIGL 190 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHH
Confidence 34556788888888888899999998854447889999999999988888877777665433 4557777788888877
Q ss_pred HHhhhcccCCC
Q 038309 108 IVALTLLPSTT 118 (139)
Q Consensus 108 il~~~i~p~~~ 118 (139)
++.++..++..
T Consensus 191 ~~~~~~~~~~~ 201 (491)
T 4aps_A 191 LVYYFGGKKTL 201 (491)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHhCcccc
Confidence 77766655433
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=95.33 E-value=0.021 Score=45.61 Aligned_cols=72 Identities=14% Similarity=0.081 Sum_probs=50.9
Q ss_pred hHhhhhhccCCCCCceeeech-hhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccCCCCC
Q 038309 45 FAMASIFSRTSAAGQGLSLGV-LNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPSTTAD 120 (139)
Q Consensus 45 yAm~s~~i~~~g~~~GlyMGI-fN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~~~~~ 120 (139)
++.+++..|+ +.+|..+|+ +|..--+..++..+.+|.+.+.+| -..++.+.++..++++++.++..++.+++
T Consensus 334 ~~~~~~~~p~--~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g--~~~~f~~~~~~~l~~~~~~~~~~~~~~~~ 406 (417)
T 2cfq_A 334 FKYITSQFEV--RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG--FQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHHHHHHSCH--HHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH--HHHHHHHHHHHHHHHHHHHTTSSCCSCTT
T ss_pred HHHHHHHCCH--HHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHhhhcCCCch
Confidence 5667777776 457777777 587777777777777776555433 45578888888889988887766655544
No 9
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=94.81 E-value=0.11 Score=42.02 Aligned_cols=86 Identities=9% Similarity=-0.013 Sum_probs=58.8
Q ss_pred HHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeech---hhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHH
Q 038309 27 LAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGV---LNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAA 103 (139)
Q Consensus 27 l~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGI---fN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~ 103 (139)
++...+.|+..+.....-.+++++..++ ++.|..+++ .+....+-+++..+.+|.+.+.+ +-...+.+.++..
T Consensus 113 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--g~~~~f~~~~~~~ 188 (524)
T 2xut_A 113 YTGLFLIALGSGGIKPLVSSFMGDQFDQ--SNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF--GAAVAFGIPGVLM 188 (524)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHTCST--TTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccchhHHHHHHHHcCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHH
Confidence 3445667888888777778889999887 455555555 77777777777777666655433 2445677777777
Q ss_pred HHHHHHhhhcccC
Q 038309 104 ALSGIVALTLLPS 116 (139)
Q Consensus 104 liaail~~~i~p~ 116 (139)
+++.++.++..++
T Consensus 189 ~~~~~~~~~~~~~ 201 (524)
T 2xut_A 189 FVATVFFWLGRKR 201 (524)
T ss_dssp HHHHHHHHSSSSS
T ss_pred HHHHHHHHHhccc
Confidence 7777766655443
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=89.84 E-value=0.75 Score=36.43 Aligned_cols=75 Identities=19% Similarity=0.158 Sum_probs=43.6
Q ss_pred hchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhh----hcCCCchhHHHHHHHHHHHHHHHhhhcccCC
Q 038309 42 SVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDA----VCGGGNMPAFMVGAVAAALSGIVALTLLPST 117 (139)
Q Consensus 42 SmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~----lfgg~~~~A~v~ggv~~liaail~~~i~p~~ 117 (139)
.++|.+.++..|. +-++..+|+-+.+--+-.++.+...+.+.+ .-+-+....+.+-++..+++++++++..|+.
T Consensus 389 ~~~~~~~~E~fPt--~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 389 PVCWVLLSEIFPN--AIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHHHHSSCT--TTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHhCCH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 5788999999887 456667777665433333333332222211 0011223445566677778888888888876
Q ss_pred C
Q 038309 118 T 118 (139)
Q Consensus 118 ~ 118 (139)
|
T Consensus 467 k 467 (491)
T 4gc0_A 467 K 467 (491)
T ss_dssp T
T ss_pred C
Confidence 6
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=89.78 E-value=0.45 Score=36.88 Aligned_cols=81 Identities=15% Similarity=0.115 Sum_probs=54.2
Q ss_pred HHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHH
Q 038309 26 ALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAAL 105 (139)
Q Consensus 26 al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~li 105 (139)
.+..+..+|+..+..+...++++.+..+++ .+..+++.+ +-.+-+.+.....|.+.+.+|+ -..++.+.++++++
T Consensus 350 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~-~~~~~~~~~~~~~~ 424 (438)
T 3o7q_A 350 GLIALTLCSAFMSIQYPTIFSLGIKNLGQD---TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGN-IPTAELIPALCFAV 424 (438)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG---HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTS-SGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHH
Confidence 345567778888888888888878877763 666677666 4447778888777877776552 33455556666655
Q ss_pred HHHHhh
Q 038309 106 SGIVAL 111 (139)
Q Consensus 106 aail~~ 111 (139)
..++.+
T Consensus 425 ~~~~~~ 430 (438)
T 3o7q_A 425 IFIFAR 430 (438)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 555444
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=88.23 E-value=0.41 Score=37.99 Aligned_cols=86 Identities=15% Similarity=0.059 Sum_probs=57.0
Q ss_pred HHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchhhhcCCC------chhHHHHHHHH
Q 038309 29 IFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGG------NMPAFMVGAVA 102 (139)
Q Consensus 29 lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~------~~~A~v~ggv~ 102 (139)
.=.+.|+..+..+..-.+++++..|+ ++.|.++++.+.++++.+++..+.+.......+.. -...+.+..+.
T Consensus 132 ~R~l~G~g~G~~~~~~~~~i~E~~p~--~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (491)
T 4gc0_A 132 YRIIGGIGVGLASMLSPMYIAELAPA--HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIP 209 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCG--GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCH--HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhh
Confidence 34566788888888888899999998 68999999999999999998877555443332221 12234444444
Q ss_pred HHHHHHHhhhcccC
Q 038309 103 AALSGIVALTLLPS 116 (139)
Q Consensus 103 ~liaail~~~i~p~ 116 (139)
.++..++.+++.+.
T Consensus 210 ~~~~~~~~~~~peS 223 (491)
T 4gc0_A 210 ALLFLMLLYTVPES 223 (491)
T ss_dssp HHHHHHHGGGSCCC
T ss_pred hhhhhhhhhcCCCC
Confidence 44444444444333
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=59.48 E-value=2 Score=32.76 Aligned_cols=57 Identities=11% Similarity=-0.055 Sum_probs=42.0
Q ss_pred HHHHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHhhhcchh
Q 038309 26 ALAIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSLLSGPFD 85 (139)
Q Consensus 26 al~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl~~G~~~ 85 (139)
.++.+.+.|+.++.....-++++.+..|+ ++|..+|+.|.+.-+-+.+.+...|.+.
T Consensus 294 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p~---~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 350 (375)
T 2gfp_A 294 LLVPAALFFFGAGMLFPLATSGAMEPFPF---LAGTAGALVGGLQNIGSGVLASLSAMLP 350 (375)
T ss_dssp HHHHHHHHHHHHHHTSSTTHHHHHTHHHH---HHHHHHHHHHHHHHHHHHCCSTTCTHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhCCc---ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556677888888888888888888873 5899999999877666665555555543
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=53.79 E-value=1.6 Score=34.63 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=30.3
Q ss_pred CceeeechhhhhhhhHHHHHHhhhcchhhhcCCCchhHHHHHHHHHHHHHHHhhhcccCC
Q 038309 58 GQGLSLGVLNLAIVVPQMLVSLLSGPFDAVCGGGNMPAFMVGAVAAALSGIVALTLLPST 117 (139)
Q Consensus 58 ~~GlyMGIfN~~IVIPQii~sl~~G~~~~lfgg~~~~A~v~ggv~~liaail~~~i~p~~ 117 (139)
+.|..+|..+...-+-..+....+|.+.+. + ....+.++++..++..++.++..|++
T Consensus 135 ~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~-~--~~~~f~~~~~~~~~~~~~~~~~~~~~ 191 (417)
T 2cfq_A 135 RSNFEFGRARMFGCVGWALGASIVGIMFTI-N--NQFVFWLGSGCALILAVLLFFAKTDA 191 (417)
T ss_dssp HHTCCHHHHSSSTTTHHHHHHHHHHHHHHH-C--SHHHHTTTTTTTTTHHHHSCSSCCCC
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHh-c--hhHHHHHHHHHHHHHHHHHHHcCccc
Confidence 356666766665555555555545554332 2 23456666666555555555454443
No 15
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1
Probab=41.92 E-value=59 Score=25.01 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=35.4
Q ss_pred HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHh
Q 038309 28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSL 79 (139)
Q Consensus 28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl 79 (139)
+++++++...+...++|.|.+....+. ....+...++.+...+|.++.++
T Consensus 88 l~~~~~~~~l~~~lg~~~a~~l~~~~~--~~~~~~~~~~~~~~~iP~~v~~~ 137 (295)
T 3d31_C 88 LYAGFLATLLALLLGAPTGYILARFDF--PGKRLVESIIDVPVVVPHTVAGI 137 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCC--TTHHHHHHHHHGGGTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCc--chHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777788888876665443 34677788888888888887654
No 16
>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: f.58.1.1
Probab=25.10 E-value=1.6e+02 Score=22.36 Aligned_cols=50 Identities=18% Similarity=0.389 Sum_probs=35.6
Q ss_pred HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHh
Q 038309 28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSL 79 (139)
Q Consensus 28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl 79 (139)
+.+++++...+...++|.|......+. ....+...++.+...+|.++..+
T Consensus 78 l~~~~~~~~l~~~lg~~~a~~l~~~~~--~~~~~~~~~~~~~~~iP~~v~~~ 127 (284)
T 2onk_C 78 YYAALISTLIAVIFGTPLAYILARKSF--PGKSVVEGIVDLPVVIPHTVAGI 127 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCC--SSHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCc--chHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888887665443 34666777777778888777654
No 17
>3tui_A D-methionine transport system permease protein ME; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} SCOP: f.58.1.1 PDB: 3dhw_A* 3tuj_A 3tuz_A*
Probab=24.54 E-value=76 Score=22.28 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=38.4
Q ss_pred HHHHHhchHHHHHhhchhHhhhhhccCC-----CCCceeeechhhhhhhhHHHHHHhhhcch-hhhcCC
Q 038309 28 AIFTVLGIPQAITFSVPFAMASIFSRTS-----AAGQGLSLGVLNLAIVVPQMLVSLLSGPF-DAVCGG 90 (139)
Q Consensus 28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~-----g~~~GlyMGIfN~~IVIPQii~sl~~G~~-~~lfgg 90 (139)
+..++++...+...++|.+++....... ....-+.+.+.++...+|.++..+..-+. ..++|.
T Consensus 17 l~~~~~~~~l~~~lg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~~~~~~ 85 (217)
T 3tui_A 17 LAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGT 85 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTSSSCCHHHHHHHHHHHHHHHTSCHHHHHHHTHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566778888888888888877665310 01123456667777788887765533222 235554
No 18
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=21.80 E-value=1e+02 Score=18.93 Aligned_cols=22 Identities=14% Similarity=0.076 Sum_probs=10.2
Q ss_pred HHHHHHHHHH--HHHHHhhhcccC
Q 038309 95 AFMVGAVAAA--LSGIVALTLLPS 116 (139)
Q Consensus 95 A~v~ggv~~l--iaail~~~i~p~ 116 (139)
+=+++|++.+ ++...+++++-+
T Consensus 14 ~gVVgGv~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 14 AGVIGGLFILVIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EeehHHHHHHHHHHHHHHHHhhhh
Confidence 3455666663 333333444443
No 19
>3rlf_G Maltose transport system permease protein MALG; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} SCOP: f.58.1.1 PDB: 3fh6_G 2r6g_G* 3puv_G* 3pux_G* 3puy_G* 3puz_G* 3pv0_G* 3puw_G*
Probab=20.55 E-value=37 Score=25.82 Aligned_cols=50 Identities=16% Similarity=0.111 Sum_probs=36.2
Q ss_pred HHHHHhchHHHHHhhchhHhhhhhccCCCCCceeeechhhhhhhhHHHHHHh
Q 038309 28 AIFTVLGIPQAITFSVPFAMASIFSRTSAAGQGLSLGVLNLAIVVPQMLVSL 79 (139)
Q Consensus 28 ~lf~~lGIpwAs~lSmPyAm~s~~i~~~g~~~GlyMGIfN~~IVIPQii~sl 79 (139)
+++++++...+...+++.|.+....+. ....+.+.++.+...+|.++..+
T Consensus 89 l~~~~~~~~~~~~lg~~~a~~~~~~~~--~~~~~~~~~~~~~~~iP~~v~~~ 138 (296)
T 3rlf_G 89 VKVAGISAIGIVALSTTCAYAFARMRF--PGKATLLKGMLIFQMFPAVLSLV 138 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCC--TTHHHHHHHHHHHHTSCCSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccc--ccHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888889998887766444 45667777888888888765543
No 20
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=20.04 E-value=1.6e+02 Score=17.94 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=13.0
Q ss_pred chhHHHHHHHHHHHHH--HHhhhcccC
Q 038309 92 NMPAFMVGAVAAALSG--IVALTLLPS 116 (139)
Q Consensus 92 ~~~A~v~ggv~~liaa--il~~~i~p~ 116 (139)
.+-+=+++|++.++.- +.++++.-+
T Consensus 12 ~IA~gVVgGv~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 12 SIATGMVGALLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEeehhHHHHHHHHHHHHHHHHhhhh
Confidence 3456677777774433 333444443
Done!