Query 038311
Match_columns 207
No_of_seqs 177 out of 920
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 09:42:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038311.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038311hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02689 Bifunctional isoaspar 100.0 9.1E-45 2E-49 326.7 16.9 137 5-142 181-317 (318)
2 PRK10226 isoaspartyl peptidase 100.0 1.6E-43 3.4E-48 318.1 17.2 135 8-143 175-312 (313)
3 cd04702 ASRGL1_like ASRGL1_lik 100.0 6.7E-42 1.5E-46 300.4 16.8 131 8-141 127-260 (261)
4 cd04701 Asparaginase_2 L-Aspar 100.0 1.4E-41 3E-46 298.8 16.1 128 6-134 129-259 (260)
5 cd04512 Ntn_Asparaginase_2_lik 100.0 1.5E-40 3.2E-45 290.5 15.1 121 9-131 125-248 (248)
6 cd04703 Asparaginase_2_like A 100.0 1.1E-40 2.3E-45 290.9 13.2 120 8-131 125-246 (246)
7 COG1446 Asparaginase [Amino ac 100.0 3E-40 6.5E-45 293.8 12.3 132 6-139 170-304 (307)
8 cd04514 Taspase1_like Taspase1 100.0 2.4E-39 5.3E-44 289.8 15.7 134 7-142 136-286 (303)
9 cd04513 Glycosylasparaginase G 100.0 3.7E-39 8E-44 283.8 15.3 120 9-130 136-262 (263)
10 PF01112 Asparaginase_2: Aspar 100.0 5E-39 1.1E-43 289.8 13.4 129 7-137 179-308 (319)
11 PLN02937 Putative isoaspartyl 100.0 4.1E-38 8.8E-43 291.9 17.1 119 7-126 224-357 (414)
12 KOG1592 Asparaginase [Amino ac 100.0 3.6E-37 7.7E-42 274.2 11.7 138 6-144 181-324 (326)
13 PF08606 Prp19: Prp19/Pso4-lik 100.0 4.1E-33 8.8E-38 200.6 6.5 53 151-203 1-53 (70)
14 KOG1593 Asparaginase [Amino ac 100.0 1.7E-31 3.7E-36 234.8 12.5 119 4-124 201-323 (349)
15 KOG0289 mRNA splicing factor [ 100.0 7.5E-30 1.6E-34 235.5 5.8 71 132-203 46-116 (506)
16 PF06267 DUF1028: Family of un 84.4 9.4 0.0002 32.7 9.1 125 19-167 7-135 (190)
17 PLN02180 gamma-glutamyl transp 76.8 20 0.00044 36.0 9.8 82 10-95 418-539 (639)
18 COG3290 CitA Signal transducti 76.4 3.7 7.9E-05 40.4 4.4 102 85-191 203-330 (537)
19 TIGR00066 g_glut_trans gamma-g 73.2 27 0.00059 33.9 9.5 82 10-95 342-454 (516)
20 PF01019 G_glu_transpept: Gamm 72.1 17 0.00037 35.0 7.8 83 9-95 324-442 (510)
21 PF02183 HALZ: Homeobox associ 70.6 8.8 0.00019 25.4 3.9 29 160-188 14-42 (45)
22 COG5324 Uncharacterized conser 68.6 4.4 9.4E-05 40.0 2.9 37 161-197 141-177 (758)
23 PLN02198 glutathione gamma-glu 67.9 40 0.00086 33.3 9.4 83 10-96 367-491 (573)
24 KOG2629 Peroxisomal membrane a 66.9 13 0.00029 33.9 5.5 39 160-198 131-169 (300)
25 PRK09615 ggt gamma-glutamyltra 66.0 41 0.00089 33.3 9.1 83 10-95 390-512 (581)
26 PF06156 DUF972: Protein of un 64.3 14 0.0003 28.8 4.5 34 158-191 22-55 (107)
27 PF05499 DMAP1: DNA methyltran 62.1 24 0.00053 30.0 5.8 50 146-199 119-168 (176)
28 PF02183 HALZ: Homeobox associ 56.2 25 0.00054 23.3 4.0 29 161-189 8-36 (45)
29 KOG4467 Uncharacterized conser 55.7 13 0.00029 35.3 3.6 49 154-203 432-495 (557)
30 PRK10884 SH3 domain-containing 54.4 86 0.0019 27.0 8.1 55 144-198 83-158 (206)
31 PF08232 Striatin: Striatin fa 53.8 45 0.00099 26.7 5.9 35 155-189 1-42 (134)
32 PF01935 DUF87: Domain of unkn 53.0 39 0.00084 28.2 5.7 43 57-121 26-68 (229)
33 PRK02195 V-type ATP synthase s 50.8 42 0.00091 28.7 5.6 44 160-203 26-69 (201)
34 COG1446 Asparaginase [Amino ac 49.8 19 0.00041 33.2 3.4 28 103-130 174-201 (307)
35 PRK06718 precorrin-2 dehydroge 46.6 1.1E+02 0.0025 25.7 7.6 69 126-196 108-183 (202)
36 PRK14127 cell division protein 45.7 44 0.00096 26.2 4.5 41 150-190 22-62 (109)
37 PF06657 Cep57_MT_bd: Centroso 45.4 47 0.001 24.4 4.4 38 145-182 4-41 (79)
38 PF08581 Tup_N: Tup N-terminal 43.1 91 0.002 23.0 5.6 30 156-185 2-31 (79)
39 smart00338 BRLZ basic region l 42.4 64 0.0014 22.1 4.5 32 159-190 27-58 (65)
40 PF09631 Sen15: Sen15 protein; 42.0 23 0.00049 26.8 2.4 28 123-150 72-100 (101)
41 COG3342 Uncharacterized conser 41.8 66 0.0014 29.0 5.5 56 45-109 28-86 (265)
42 PLN02689 Bifunctional isoaspar 40.9 30 0.00066 31.9 3.4 28 103-130 186-213 (318)
43 PF00435 Spectrin: Spectrin re 40.8 44 0.00096 23.2 3.6 34 150-183 72-105 (105)
44 PRK06342 transcription elongat 40.1 74 0.0016 26.3 5.3 46 126-173 1-49 (160)
45 PF11043 DUF2856: Protein of u 39.6 1.2E+02 0.0027 22.9 5.9 28 145-172 8-35 (97)
46 KOG3156 Uncharacterized membra 39.6 62 0.0013 28.5 4.9 44 151-194 101-145 (220)
47 PF14824 Sirohm_synth_M: Siroh 39.5 6.2 0.00013 24.3 -0.9 18 22-39 2-19 (30)
48 cd04513 Glycosylasparaginase G 38.8 35 0.00075 30.7 3.4 29 102-130 136-164 (263)
49 PF02865 STAT_int: STAT protei 37.6 55 0.0012 26.0 4.0 48 156-204 60-108 (124)
50 PF06739 SBBP: Beta-propeller 37.1 77 0.0017 19.8 3.9 24 10-34 12-35 (38)
51 PLN02937 Putative isoaspartyl 37.0 36 0.00078 32.5 3.3 27 103-129 227-253 (414)
52 PLN02777 photosystem I P subun 36.8 30 0.00065 29.2 2.5 24 147-170 67-90 (167)
53 PF14584 DUF4446: Protein of u 36.7 93 0.002 25.6 5.4 42 151-192 39-80 (151)
54 PF00170 bZIP_1: bZIP transcri 35.6 1.1E+02 0.0023 20.9 4.8 32 159-190 27-58 (64)
55 TIGR01354 cyt_deam_tetra cytid 34.8 1.1E+02 0.0023 24.0 5.3 38 90-127 4-44 (127)
56 PF12395 DUF3658: Protein of u 34.2 26 0.00056 27.0 1.6 30 146-179 6-35 (111)
57 PF13234 rRNA_proc-arch: rRNA- 33.5 17 0.00036 31.8 0.5 48 154-201 15-72 (268)
58 PF14942 Muted: Organelle biog 33.0 89 0.0019 25.6 4.6 36 157-192 99-134 (145)
59 PRK10226 isoaspartyl peptidase 32.1 50 0.0011 30.4 3.4 28 103-130 177-204 (313)
60 TIGR02894 DNA_bind_RsfA transc 31.3 86 0.0019 26.4 4.3 29 162-190 101-129 (161)
61 PF05325 DUF730: Protein of un 30.4 54 0.0012 25.6 2.8 39 15-54 20-63 (122)
62 PRK14126 cell division protein 30.4 52 0.0011 24.4 2.6 20 170-189 63-82 (85)
63 PF14357 DUF4404: Domain of un 30.2 37 0.0008 25.2 1.8 15 176-190 1-15 (85)
64 PF12277 DUF3618: Protein of u 30.2 56 0.0012 21.7 2.5 16 177-192 8-23 (49)
65 PF12341 DUF3639: Protein of u 30.1 67 0.0015 19.2 2.6 18 13-32 4-21 (27)
66 PF11382 DUF3186: Protein of u 30.0 90 0.002 28.3 4.6 34 157-190 31-64 (308)
67 KOG4421 Uncharacterized conser 29.9 34 0.00074 32.8 1.9 21 159-179 329-349 (637)
68 cd04702 ASRGL1_like ASRGL1_lik 29.6 61 0.0013 29.2 3.4 28 103-130 129-156 (261)
69 KOG4005 Transcription factor X 29.6 1.1E+02 0.0024 27.6 5.0 33 162-194 115-147 (292)
70 PF14389 Lzipper-MIP1: Leucine 29.0 1.4E+02 0.003 22.3 4.7 42 149-190 45-86 (88)
71 cd04512 Ntn_Asparaginase_2_lik 29.0 64 0.0014 28.8 3.4 28 103-130 126-153 (248)
72 PF12709 Kinetocho_Slk19: Cent 29.0 1E+02 0.0022 23.4 4.0 30 158-187 49-78 (87)
73 cd04514 Taspase1_like Taspase1 28.9 62 0.0013 29.7 3.4 27 103-129 139-165 (303)
74 cd04701 Asparaginase_2 L-Aspar 28.8 65 0.0014 28.9 3.4 28 103-130 133-160 (260)
75 PF14775 NYD-SP28_assoc: Sperm 28.6 1.7E+02 0.0037 20.3 4.9 46 150-195 11-59 (60)
76 PRK00373 V-type ATP synthase s 27.9 1.3E+02 0.0029 25.4 5.0 33 160-192 27-59 (204)
77 COG3599 DivIVA Cell division i 27.8 1.2E+02 0.0026 26.4 4.8 44 153-196 25-68 (212)
78 KOG4196 bZIP transcription fac 27.2 85 0.0018 25.6 3.5 19 75-95 34-52 (135)
79 COG0100 RpsK Ribosomal protein 26.9 63 0.0014 26.2 2.7 29 9-39 27-55 (129)
80 PF01112 Asparaginase_2: Aspar 26.8 50 0.0011 30.3 2.4 27 103-129 182-208 (319)
81 COG2433 Uncharacterized conser 26.5 80 0.0017 31.9 3.9 89 102-199 251-358 (652)
82 PF01484 Col_cuticle_N: Nemato 26.0 1.4E+02 0.0031 19.2 3.9 34 153-186 18-51 (53)
83 PF04048 Sec8_exocyst: Sec8 ex 25.8 1.2E+02 0.0027 24.1 4.3 21 156-176 2-22 (142)
84 PF08702 Fib_alpha: Fibrinogen 25.1 1.4E+02 0.003 24.3 4.5 34 153-186 99-132 (146)
85 PF05103 DivIVA: DivIVA protei 25.1 30 0.00065 26.5 0.5 40 152-191 19-58 (131)
86 PRK12411 cytidine deaminase; P 24.7 1.7E+02 0.0038 23.3 4.9 40 89-128 6-48 (132)
87 PF05701 WEMBL: Weak chloropla 24.7 1.5E+02 0.0033 28.8 5.4 41 158-198 116-156 (522)
88 cd08907 START_STARD8-like C-te 24.5 1.2E+02 0.0026 26.4 4.2 57 121-179 33-90 (205)
89 PF06216 RTBV_P46: Rice tungro 24.5 1.3E+02 0.0029 27.5 4.6 34 157-190 70-103 (389)
90 PF01017 STAT_alpha: STAT prot 24.2 69 0.0015 26.7 2.6 30 157-186 120-149 (182)
91 PRK05578 cytidine deaminase; V 24.1 1.9E+02 0.0041 23.0 5.0 39 90-128 7-48 (131)
92 PF08491 SE: Squalene epoxidas 24.0 1.3E+02 0.0029 27.2 4.6 80 103-199 127-208 (276)
93 PF14723 SSFA2_C: Sperm-specif 23.7 80 0.0017 26.9 2.9 21 176-196 156-176 (179)
94 PRK06848 hypothetical protein; 23.6 1.8E+02 0.004 23.4 4.9 39 90-128 11-51 (139)
95 PLN02402 cytidine deaminase 23.5 3.2E+02 0.007 25.1 7.0 51 75-125 10-67 (303)
96 PRK11546 zraP zinc resistance 23.4 1.7E+02 0.0038 24.0 4.7 32 162-194 51-82 (143)
97 PF04380 BMFP: Membrane fusoge 23.3 1.5E+02 0.0032 21.6 3.9 27 164-190 49-75 (79)
98 PF13935 Ead_Ea22: Ead/Ea22-li 23.2 3E+02 0.0065 21.9 6.1 37 166-203 85-129 (139)
99 PHA02677 hypothetical protein; 22.7 78 0.0017 24.9 2.4 18 155-172 18-35 (108)
100 PF07716 bZIP_2: Basic region 22.4 2E+02 0.0043 19.1 4.1 27 161-187 28-54 (54)
101 PF04312 DUF460: Protein of un 22.2 98 0.0021 25.4 3.0 60 102-170 39-102 (138)
102 PF12938 M_domain: M domain of 22.2 1.1E+02 0.0023 27.3 3.5 29 166-194 179-209 (235)
103 PTZ00129 40S ribosomal protein 21.9 91 0.002 25.9 2.8 28 10-39 38-65 (149)
104 smart00150 SPEC Spectrin repea 21.8 1.1E+02 0.0023 21.1 2.9 24 150-173 69-92 (101)
105 cd06357 PBP1_AmiC Periplasmic 21.6 3.8E+02 0.0083 23.7 7.1 41 76-116 286-326 (360)
106 PF07494 Reg_prop: Two compone 21.4 1.6E+02 0.0036 16.3 3.4 21 9-30 3-23 (24)
107 PF13801 Metal_resist: Heavy-m 20.9 2.9E+02 0.0062 19.8 5.2 32 163-194 46-81 (125)
108 TIGR00309 V_ATPase_subD H(+)-t 20.4 2.2E+02 0.0048 24.2 5.0 33 160-192 25-57 (209)
109 PF05305 DUF732: Protein of un 20.3 1.8E+02 0.0038 21.2 3.9 27 72-99 46-72 (100)
110 cd00427 Ribosomal_L29_HIP Ribo 20.1 1.6E+02 0.0034 20.0 3.3 21 161-181 9-29 (57)
111 cd04703 Asparaginase_2_like A 20.0 1.2E+02 0.0025 27.2 3.3 27 102-129 126-152 (246)
No 1
>PLN02689 Bifunctional isoaspartyl peptidase/L-asparaginase
Probab=100.00 E-value=9.1e-45 Score=326.70 Aligned_cols=137 Identities=69% Similarity=1.045 Sum_probs=130.5
Q ss_pred cccCCCCceEEEEEeCCCCCEEEEecCCCCCCCCCcccCCCCccccceeeeceeEEeecCchhHHHHHhHHHHHHHHHHh
Q 038311 5 IMDGNTKRCGVRLLQGSKGNLATATSIGGMVNKMVGKIGDTPIIGSGTYANNLCAVSATGKGEAIIRHTVARDVAAVMEF 84 (207)
Q Consensus 5 ~~~~~~dTVG~v~~~D~~G~lAaaTSTGG~~~K~pGRVGDSpiiGaG~YAd~~~Avs~TG~GE~iir~~lA~~i~~~m~~ 84 (207)
..+..|||||+|++ |.+|++|++|||||+++|+|||||||||||||+|||+.+||||||+||+|||+++|++|+++|++
T Consensus 181 ~~~~~~dTVGaVal-D~~G~lAaaTSTGG~~~K~pGRVGDSpiiGaG~yAd~~~Avs~TG~GE~iir~~~A~~v~~~m~~ 259 (318)
T PLN02689 181 DGDAQPETVGCVAV-DSDGNCAAATSTGGLVNKMVGRIGDTPIIGAGTYANHLCAVSATGKGEAIIRGTVARDVAAVMEY 259 (318)
T ss_pred cCCCCCCcEEEEEE-eCCCCEEEEECCCCccCCCCcccCCCcccCCchhccCCcEEeeecchHHHHHHHHHHHHHHHHHh
Confidence 34568999999998 99999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCHHHHHHHHHHhhCCCCeEEEEEEecCCCEEEeecCCcceeEEEecCCceEEEEe
Q 038311 85 KGLSLKEASGCVIEECVPRGNVGLIVVSASSEVTMPFNTTGMFRACATEDGYSHIGIW 142 (207)
Q Consensus 85 ~g~~~~~A~~~~i~~~~~~~~gGvI~l~~~G~~~~~~nt~~M~~a~~~~DG~i~igI~ 142 (207)
+|++|++|++.+|+++++.+.+|+|++|++|+++++|||++|+|||++.++.+++.+|
T Consensus 260 ~g~s~~~A~~~~i~~~~~~~~gG~Iavd~~G~~~~~~nt~~m~~a~~~~~g~~~~~~~ 317 (318)
T PLN02689 260 KGLPLQEAVDYVIKERLPEGPAGLIAVSATGEVAMAFNTTGMFRACATEDGFMEVGIW 317 (318)
T ss_pred cCCCHHHHHHHHHHhhCcCCceEEEEEcCCccEEEEeCCcCeEEEEEeCCCceEEeec
Confidence 8999999999999887767999999999999999999999999999999999988886
No 2
>PRK10226 isoaspartyl peptidase; Provisional
Probab=100.00 E-value=1.6e-43 Score=318.08 Aligned_cols=135 Identities=45% Similarity=0.717 Sum_probs=126.1
Q ss_pred CCCCceEEEEEeCCCCCEEEEecCCCCCCCCCcccCCCCccccceeeec-eeEEeecCchhHHHHHhHHHHHHHHHHhcC
Q 038311 8 GNTKRCGVRLLQGSKGNLATATSIGGMVNKMVGKIGDTPIIGSGTYANN-LCAVSATGKGEAIIRHTVARDVAAVMEFKG 86 (207)
Q Consensus 8 ~~~dTVG~v~~~D~~G~lAaaTSTGG~~~K~pGRVGDSpiiGaG~YAd~-~~Avs~TG~GE~iir~~lA~~i~~~m~~~g 86 (207)
.++||||+|++ |.+||+|++|||||+++|+|||||||||||||+|||+ .+||||||+||+|||+++|++|+++|++.|
T Consensus 175 ~~~dTVGaVal-D~~G~lAaaTSTGG~~~K~pGRVGDSpi~GAG~yAd~~~~A~s~TG~GE~iir~~~A~~v~~~m~~gg 253 (313)
T PRK10226 175 QKMGTVGAVAL-DLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFIRALAAYDIAALMDYGG 253 (313)
T ss_pred CCCCCEEEEEE-eCCCCEEEEECCCCccCCCCCccCCCCCcCCeeeecCCceEEEeeccHHHHHHHhHHHHHHHHHHhcC
Confidence 56899999997 9999999999999999999999999999999999985 599999999999999999999999999557
Q ss_pred CCHHHHHHHHHHhhC--CCCeEEEEEEecCCCEEEeecCCcceeEEEecCCceEEEEec
Q 038311 87 LSLKEASGCVIEECV--PRGNVGLIVVSASSEVTMPFNTTGMFRACATEDGYSHIGIWT 143 (207)
Q Consensus 87 ~~~~~A~~~~i~~~~--~~~~gGvI~l~~~G~~~~~~nt~~M~~a~~~~DG~i~igI~~ 143 (207)
++|++|++.+|.++. .++.+|+|++|++|+++++|||++|+|+|...++.+++.+|+
T Consensus 254 ~~~~~A~~~~i~~~~~~~gg~gG~Iavd~~G~~~~~~nt~~M~~~~~~~~g~~~~~~~~ 312 (313)
T PRK10226 254 LSLAEACERVVMEKLPALGGSGGLIAIDHEGNVALPFNTEGMYRAWGYAGDTPTTGIYR 312 (313)
T ss_pred CCHHHHHHHHHHHHHHhcCCceEEEEEcCCCCEEEEeCCcccceEEEeCCCcEEEeecC
Confidence 999999999998754 257899999999999999999999999999999999988874
No 3
>cd04702 ASRGL1_like ASRGL1_like domains, a subfamily of the L-Asparaginase type 2-like enzymes. The wider family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue. ASRGL1, or asparaginase-like 1, has been cloned from mammalian testis cDNA libraries. It has been identified as a sperm antigen that may induce the production of autoantibodies following obstruction of the male reproductive tract, e.g. vasectomy.
Probab=100.00 E-value=6.7e-42 Score=300.44 Aligned_cols=131 Identities=44% Similarity=0.631 Sum_probs=122.1
Q ss_pred CCCCceEEEEEeCCCCCEEEEecCCCCCCCCCcccCCCCccccceeeec-eeEEeecCchhHHHHHhHHHHHHHHHHhcC
Q 038311 8 GNTKRCGVRLLQGSKGNLATATSIGGMVNKMVGKIGDTPIIGSGTYANN-LCAVSATGKGEAIIRHTVARDVAAVMEFKG 86 (207)
Q Consensus 8 ~~~dTVG~v~~~D~~G~lAaaTSTGG~~~K~pGRVGDSpiiGaG~YAd~-~~Avs~TG~GE~iir~~lA~~i~~~m~~~g 86 (207)
.++||||+|++ |.+|++|++|||||+++|+|||||||||||||+|||+ .+||||||+||+|||+++|++++++|+ .|
T Consensus 127 ~G~dTVGaval-D~~G~laaatSTgG~~~K~~GRVGDspi~GaG~yAd~~~ga~s~TG~GE~iir~~~a~~v~~~m~-~g 204 (261)
T cd04702 127 MGLGTVGAVAL-DASGNIAAATSTGGTTNKLVGRVGDTPLIGCGTYADNKVGAVSTTGHGESIMKVVLARLILDHME-QG 204 (261)
T ss_pred cCCCceEEEEE-eCCCCEEEEECCCCccCCCCCcCCCCCcCCCceeecCCceEEEeeccHHHHHHHHHHHHHHHHHH-cC
Confidence 34899999998 9999999999999999999999999999999999975 699999999999999999999999999 89
Q ss_pred CCHHHHHHHHHHhhC--CCCeEEEEEEecCCCEEEeecCCcceeEEEecCCceEEEE
Q 038311 87 LSLKEASGCVIEECV--PRGNVGLIVVSASSEVTMPFNTTGMFRACATEDGYSHIGI 141 (207)
Q Consensus 87 ~~~~~A~~~~i~~~~--~~~~gGvI~l~~~G~~~~~~nt~~M~~a~~~~DG~i~igI 141 (207)
++|+||++++|+++. .++.+|+|++|++|+++++|||++|+|+|++.+ .+++++
T Consensus 205 ~s~~eA~~~~i~~~~~~~~g~gG~Iavd~~G~~~~a~nt~~m~~a~~~~~-~~~~~~ 260 (261)
T cd04702 205 GSAQEAADKAIEYMTERVKGTGGAIVLDSSGEVGAAFNSKRMAWAYAKDG-QLHYGI 260 (261)
T ss_pred CCHHHHHHHHHHHHHHHcCCceEEEEEeCCCCEEEEeCCCCceEEEEeCC-eeEEee
Confidence 999999999998754 368899999999999999999999999999765 777765
No 4
>cd04701 Asparaginase_2 L-Asparaginase type 2. L-Asparaginase hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzyme undergoes an autoproteolytic cleavage into alpha and beta subunits to expose a threonine residue which becomes the N-terminal residue of the beta subunit. The threonine residue plays a central role in hydrolase activity. Some asparaginases can also hydrolyze L-glutamine and are termed glutaminase-asparaginase. This is a member of the Ntn-hydrolase superfamily.
Probab=100.00 E-value=1.4e-41 Score=298.77 Aligned_cols=128 Identities=53% Similarity=0.788 Sum_probs=119.5
Q ss_pred ccCCCCceEEEEEeCCCCCEEEEecCCCCCCCCCcccCCCCccccceeeec-eeEEeecCchhHHHHHhHHHHHHHHHHh
Q 038311 6 MDGNTKRCGVRLLQGSKGNLATATSIGGMVNKMVGKIGDTPIIGSGTYANN-LCAVSATGKGEAIIRHTVARDVAAVMEF 84 (207)
Q Consensus 6 ~~~~~dTVG~v~~~D~~G~lAaaTSTGG~~~K~pGRVGDSpiiGaG~YAd~-~~Avs~TG~GE~iir~~lA~~i~~~m~~ 84 (207)
..+.+||||+|++ |.+|++|++|||||+++|+|||||||||||||+|||+ .+||||||+||+|||+++|++++++|++
T Consensus 129 ~~G~~dTVGaval-D~~G~~aaatSTGG~~~K~pGRVGDSpi~GaG~yAd~~~~avs~TG~GE~iir~~~A~~v~~~~~~ 207 (260)
T cd04701 129 EQGKHGTVGAVAL-DSHGNLAAATSTGGLTNKRPGRIGDTPIIGAGTYADNWSVAVSCTGTGEYFIRVAAAHDVAARVRY 207 (260)
T ss_pred HcCCCCcEEEEEE-eCCCCEEEEECCCcccCCCCCccCCCCCCCceeeecCCcEEEEeecchHHHHHHHHHHHHHHHHHH
Confidence 3457899999997 9999999999999999999999999999999999985 5999999999999999999999999996
Q ss_pred cCCCHHHHHHHHHHhhC--CCCeEEEEEEecCCCEEEeecCCcceeEEEecC
Q 038311 85 KGLSLKEASGCVIEECV--PRGNVGLIVVSASSEVTMPFNTTGMFRACATED 134 (207)
Q Consensus 85 ~g~~~~~A~~~~i~~~~--~~~~gGvI~l~~~G~~~~~~nt~~M~~a~~~~D 134 (207)
.|++|++|++++|.++. .++++|+|++|++|+++++|||++|+|||++++
T Consensus 208 ~g~~~~~A~~~~i~~~~~~~~~~~GiIaid~~G~~~~~~nt~~m~~a~~~~~ 259 (260)
T cd04701 208 AGLSLADAAEAVIGEVLETLGGDGGLIAVDARGNVAMPFNTGGMYRGWISED 259 (260)
T ss_pred cCCCHHHHHHHHHHHHHhhcCCceEEEEEcCCccEEEEeCCCccEEEEEcCC
Confidence 69999999999998865 368899999999999999999999999998764
No 5
>cd04512 Ntn_Asparaginase_2_like Ntn-hydrolase superfamily, L-Asparaginase type 2-like enzymes. This family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoprotein. Taspase1 catalyzes the cleavage of the Mix Lineage Leukemia (MLL) nuclear protein and transcription factor TFIIA. L-Asparaginase type 2 hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzymes of this family undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=100.00 E-value=1.5e-40 Score=290.51 Aligned_cols=121 Identities=45% Similarity=0.669 Sum_probs=115.1
Q ss_pred CCCceEEEEEeCCCCCEEEEecCCCCCCCCCcccCCCCccccceeeec-eeEEeecCchhHHHHHhHHHHHHHHHHhcCC
Q 038311 9 NTKRCGVRLLQGSKGNLATATSIGGMVNKMVGKIGDTPIIGSGTYANN-LCAVSATGKGEAIIRHTVARDVAAVMEFKGL 87 (207)
Q Consensus 9 ~~dTVG~v~~~D~~G~lAaaTSTGG~~~K~pGRVGDSpiiGaG~YAd~-~~Avs~TG~GE~iir~~lA~~i~~~m~~~g~ 87 (207)
++||||+|++ |.+|++|++|||||+++|+|||||||||||||+|||+ .+||||||+||+|||+++|++++++|+ .|+
T Consensus 125 G~dTVGaval-D~~G~~aaatSTGG~~~K~pGRVGDspi~GaG~yAd~~~~a~s~TG~GE~iir~~~a~~v~~~~~-~g~ 202 (248)
T cd04512 125 GLDTVGAVAL-DGQGNLAAATSTGGMSLKLPGRVGDSPIIGAGFYADNEAGAASTTGHGEAIIRTVLARRVVELME-QGM 202 (248)
T ss_pred CcCcEEEEEE-eCCCCEEEEECCCcccCCCCCccCCCCccCceeeecCCcEEEEeeecHHHHHHHHHHHHHHHHHH-cCC
Confidence 3899999997 9999999999999999999999999999999999985 599999999999999999999999999 799
Q ss_pred CHHHHHHHHHHhhC--CCCeEEEEEEecCCCEEEeecCCcceeEEE
Q 038311 88 SLKEASGCVIEECV--PRGNVGLIVVSASSEVTMPFNTTGMFRACA 131 (207)
Q Consensus 88 ~~~~A~~~~i~~~~--~~~~gGvI~l~~~G~~~~~~nt~~M~~a~~ 131 (207)
+|++|++++|+++. .++.+|+|++|++|+++++|||++|+|+|+
T Consensus 203 ~~~~A~~~~i~~~~~~~~~~~G~Ia~d~~G~~~~a~~~~~m~~a~~ 248 (248)
T cd04512 203 AAQAAAETAVEELGSLKGGQGGVIAVDSKGEFGAAFNTAGMTVAYH 248 (248)
T ss_pred CHHHHHHHHHHHHHhhcCCeEEEEEEeCCCCEEEEECcCCceEEeC
Confidence 99999999998865 478999999999999999999999999984
No 6
>cd04703 Asparaginase_2_like A subfamily of the L-Asparaginase type 2-like enzymes. The wider family, a member of the Ntn-hydrolase superfamily, includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=100.00 E-value=1.1e-40 Score=290.94 Aligned_cols=120 Identities=35% Similarity=0.486 Sum_probs=114.7
Q ss_pred CCCCceEEEEEeCCCCCEEEEecCCCCCCCCCcccCCCCccccceeeeceeEEeecCchhHHHHHhHHHHHHHHHHhcCC
Q 038311 8 GNTKRCGVRLLQGSKGNLATATSIGGMVNKMVGKIGDTPIIGSGTYANNLCAVSATGKGEAIIRHTVARDVAAVMEFKGL 87 (207)
Q Consensus 8 ~~~dTVG~v~~~D~~G~lAaaTSTGG~~~K~pGRVGDSpiiGaG~YAd~~~Avs~TG~GE~iir~~lA~~i~~~m~~~g~ 87 (207)
.+|||||+|++ |. |++|++|||||+.+|+|||||||||||||+|||+.+||||||+||+|||+++|++++++|+ .|+
T Consensus 125 ~~~dTVG~val-D~-G~laaatSTGG~~~K~pGRVGDspi~GaG~yAd~~gavs~TG~GE~iir~~~A~~v~~~~~-~g~ 201 (246)
T cd04703 125 GGHDTVGAVAR-DG-GRLAAATSTGGRWPALAGRVGDVPQPGAGFYAGPRGAVSATGAGEAIARNTLARSAYNRLG-TGD 201 (246)
T ss_pred CCCCCEEEEEE-EC-CCEEEEECCCcccCCCCCccCCCCCCCccccccCCceEEeeecHHHHHHHHHHHHHHHHHH-cCC
Confidence 57899999997 99 9999999999999999999999999999999998999999999999999999999999999 899
Q ss_pred CHHHHHHHHHHhhC--CCCeEEEEEEecCCCEEEeecCCcceeEEE
Q 038311 88 SLKEASGCVIEECV--PRGNVGLIVVSASSEVTMPFNTTGMFRACA 131 (207)
Q Consensus 88 ~~~~A~~~~i~~~~--~~~~gGvI~l~~~G~~~~~~nt~~M~~a~~ 131 (207)
+|++|++++|+++. .++.+|+|++|+ |+++++|||++|+|||.
T Consensus 202 ~~~~A~~~~i~~~~~~~~~~~G~Iavd~-G~~~~~~~s~~m~~a~~ 246 (246)
T cd04703 202 PAQDAAKAAISRFSEATGVTAGVIAVDP-EEEGAAYSSAAMQTAVA 246 (246)
T ss_pred CHHHHHHHHHHHHHhhcCCceEEEEECC-CceEEEeCchhhhhhcC
Confidence 99999999998764 478999999999 99999999999999973
No 7
>COG1446 Asparaginase [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-40 Score=293.77 Aligned_cols=132 Identities=45% Similarity=0.665 Sum_probs=123.1
Q ss_pred ccCCCCceEEEEEeCCCCCEEEEecCCCCCCCCCcccCCCCccccceeeec-eeEEeecCchhHHHHHhHHHHHHHHHHh
Q 038311 6 MDGNTKRCGVRLLQGSKGNLATATSIGGMVNKMVGKIGDTPIIGSGTYANN-LCAVSATGKGEAIIRHTVARDVAAVMEF 84 (207)
Q Consensus 6 ~~~~~dTVG~v~~~D~~G~lAaaTSTGG~~~K~pGRVGDSpiiGaG~YAd~-~~Avs~TG~GE~iir~~lA~~i~~~m~~ 84 (207)
-+..|||||+|++ |.+||+|++|||||+++|+|||||||||||||+||++ .+||||||.||.|||.+++++|+.+|++
T Consensus 170 ~~~~~gTVGaVAl-D~~G~lAaaTSTGG~~~k~~GRVGDSPipGAG~ya~~~~~AvS~TG~GE~~ir~~~a~~i~~~~~~ 248 (307)
T COG1446 170 PDSKHGTVGAVAL-DADGNLAAATSTGGVFLKRPGRVGDSPIPGAGFYAENGAGAVSCTGVGEVIIRNALAFDIAARVRY 248 (307)
T ss_pred CcccCCceeEEEE-eCCCcEEEEEccCccccCCCCccCCCCCCCCceeecCCcceeeccchhHHHHHHhHHHHHHHHHHc
Confidence 3678999999997 9999999999999999999999999999999999987 7999999999999999999999999995
Q ss_pred cCCCHHHHHHHHHHhhCC--CCeEEEEEEecCCCEEEeecCCcceeEEEecCCceEE
Q 038311 85 KGLSLKEASGCVIEECVP--RGNVGLIVVSASSEVTMPFNTTGMFRACATEDGYSHI 139 (207)
Q Consensus 85 ~g~~~~~A~~~~i~~~~~--~~~gGvI~l~~~G~~~~~~nt~~M~~a~~~~DG~i~i 139 (207)
|.++++|+++++++.++ .+.+|+|++|++|++.++|||++|++||++.++....
T Consensus 249 -g~~l~~A~~~vv~~~~~~~g~~~G~IavD~~G~v~~~~n~~gm~~a~~~~~~~~~~ 304 (307)
T COG1446 249 -GLSLDAACERVVEEALKALGGDGGLIAVDAKGNVAAAFNTKGMLRAWIKGGGIPTT 304 (307)
T ss_pred -CCCHHHHHHHHHHHHHHhcCCcCceEEEcCCCCeeecccchhhhhheecCCCcccc
Confidence 99999999999988652 5669999999999999999999999999988775543
No 8
>cd04514 Taspase1_like Taspase1_like domains; Taspase1 catalyzes the cleavage of the mix lineage leukemia (MLL) nuclear protein and transcription factor TFIIA. Taspase1 is a threonine aspartase, a member of the Ntn hydrolase superfamily and the type 2 asparaginase family. A threonine residue acts as the active site nucleophile in both endopeptidease and protease activities to cleave polypeptide substrates after an aspartate residue. The Taspase1 proenzyme undergoes autoproteolysis into alpha and beta subunits. The N-terminal residue of the beta subunit is a threonine which is the active catalytic residue. The active enzyme is a heterotetramer.
Probab=100.00 E-value=2.4e-39 Score=289.85 Aligned_cols=134 Identities=28% Similarity=0.378 Sum_probs=121.5
Q ss_pred cCCCCceEEEEEeCCCCCEEEEecCCCCCCCCCcccCCCCccccceeeec-e------eEEeecCchhHHHHHhHHHHHH
Q 038311 7 DGNTKRCGVRLLQGSKGNLATATSIGGMVNKMVGKIGDTPIIGSGTYANN-L------CAVSATGKGEAIIRHTVARDVA 79 (207)
Q Consensus 7 ~~~~dTVG~v~~~D~~G~lAaaTSTGG~~~K~pGRVGDSpiiGaG~YAd~-~------~Avs~TG~GE~iir~~lA~~i~ 79 (207)
.+-+||||+|++ |.+|++|++|||||+++|+||||||||+||||+||++ . +||||||+||+|||+++|++++
T Consensus 136 ~G~~dTVGaVal-D~~G~~aaatSTGG~~~K~pGRVGDspi~GaG~yAd~~~~~~~~~~a~s~TG~GE~iir~~~A~~v~ 214 (303)
T cd04514 136 HGILDTVGAVCV-DKEGNIAAGVSSGGIALKHPGRVGQAATYGCGCWASKGDPFTPTSVAVSTSGCGEHLIRTQLARECA 214 (303)
T ss_pred hCCCCCEEEEEE-eCCCCEEEEECCCcccCCCCCccCCcCcCCcEEEeccCCcccCceEEEEeeccHHHHHHHHHHHHHH
Confidence 455899999998 9999999999999999999999999999999999974 3 8999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHhhC-----CCCeEEEEEEec-----CCCEEEeecCCcceeEEEecCCceEEEEe
Q 038311 80 AVMEFKGLSLKEASGCVIEECV-----PRGNVGLIVVSA-----SSEVTMPFNTTGMFRACATEDGYSHIGIW 142 (207)
Q Consensus 80 ~~m~~~g~~~~~A~~~~i~~~~-----~~~~gGvI~l~~-----~G~~~~~~nt~~M~~a~~~~DG~i~igI~ 142 (207)
++|++.+.++++|++++|.+.. .++.+|+|++++ +|+++++|||++|+|||+..+ ++++.+-
T Consensus 215 ~~~~~~~~~~~~A~~~~i~~~~~~~~~~~~~~G~I~v~~~~~~~~g~~~~~~nt~~M~~a~~~~~-~p~~~~s 286 (303)
T cd04514 215 ERLYLSDCSLEQSLQKSFQEKFFNSPELKKLAGAIVVRAEVKTGNVEILWGHTTPSMCVGYMSGQ-KPKTKIS 286 (303)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhhcccccCCceEEEEEEeccccCcEEEEEEeCCchheeeEEcCC-CCeeEEe
Confidence 9999555699999999998754 368999999999 999999999999999999766 6666653
No 9
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=100.00 E-value=3.7e-39 Score=283.81 Aligned_cols=120 Identities=31% Similarity=0.458 Sum_probs=112.0
Q ss_pred CCCceEEEEEeCCCCCEEEEecCCCCCCCCCcccCCCCccccceeeec-eeEEeecCchhHHHHHhHHHHHHHHHHhcCC
Q 038311 9 NTKRCGVRLLQGSKGNLATATSIGGMVNKMVGKIGDTPIIGSGTYANN-LCAVSATGKGEAIIRHTVARDVAAVMEFKGL 87 (207)
Q Consensus 9 ~~dTVG~v~~~D~~G~lAaaTSTGG~~~K~pGRVGDSpiiGaG~YAd~-~~Avs~TG~GE~iir~~lA~~i~~~m~~~g~ 87 (207)
+|||||+|++ |.+||+|++|||||+++|+|||||||||||||+|||+ .+||||||+||+|||+++|++|+++|+ .|+
T Consensus 136 ~~dTVGaVal-D~~G~laaatSTGG~~~K~pGRVGDspiiGaG~yAd~~~~a~s~TG~GE~iir~~~A~~v~~~m~-~G~ 213 (263)
T cd04513 136 NHDTIGMIAL-DANGNIAAGTSTSGAAFKIPGRVGDSPIPGAGAYADSEVGAAAATGDGEEMMRFLPSFQAVEYMR-QGM 213 (263)
T ss_pred CCCCEEEEEE-eCCCCEEEEECCCCccCccCCccCCCCCCCceeeecCCceEEEeeccHHHHHHHHHHHHHHHHHH-cCC
Confidence 7899999997 9999999999999999999999999999999999975 599999999999999999999999999 799
Q ss_pred CHHHHHHHHHHhhC-----CCCeEEEEEEecCCCEEEeecCC-cceeEE
Q 038311 88 SLKEASGCVIEECV-----PRGNVGLIVVSASSEVTMPFNTT-GMFRAC 130 (207)
Q Consensus 88 ~~~~A~~~~i~~~~-----~~~~gGvI~l~~~G~~~~~~nt~-~M~~a~ 130 (207)
+|++|++++|+++. +++.+|+|++|++|+++++||+. .|++++
T Consensus 214 ~~~~A~~~~i~~~~~~~~~~~~~gg~Iavd~~G~~~~~~~~~~~~~~~v 262 (263)
T cd04513 214 SPKEACLEAIKRIAKHFDGPDFEGAVVALNKKGEYGAACNGLTEFTYAV 262 (263)
T ss_pred CHHHHHHHHHHHHHHHcCcCCCcEEEEEEcCCCCEEEEEccCCCEEEEe
Confidence 99999999998753 27889999999999999999998 666653
No 10
>PF01112 Asparaginase_2: Asparaginase; InterPro: IPR000246 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Threonine peptidases are characterised by a threonine nucleophile at the N terminus of the mature enzyme. The threonine peptidases belong to clan PB or are unassigned, clan T-. The type example for this clan is the archaean proteasome beta component of Thermoplasma acidophilum. This group of sequences have a signature that places them in MEROPS peptidase family T2 (clan PB(T)). The glycosylasparaginases (3.5.1.26 from EC) are threonine peptidases. Also in this family is L-asparaginase (3.5.1.1 from EC), which catalyses the following reaction: L-asparagine + H2O = L-aspartate + NH3 Glycosylasparaginase catalyses: N4-(beta-N-acetyl-D-glucosaminyl)-L-asparagine + H(2)O = N-acetyl-beta-glucosaminylamine + L-aspartate cleaving the GlcNAc-Asn bond that links oligosaccharides to asparagine in N-linked glycoproteins. The enzyme is composed of two non-identical alpha/beta subunits joined by strong non-covalent forces and has one glycosylation site located in the alpha subunit [] and plays a major role in the degradation of glycoproteins.; GO: 0016787 hydrolase activity; PDB: 1APY_D 1APZ_C 2GEZ_E 2GL9_B 2GAC_D 2GAW_C 1AYY_A 1P4V_C 9GAF_A 1P4K_A ....
Probab=100.00 E-value=5e-39 Score=289.76 Aligned_cols=129 Identities=43% Similarity=0.686 Sum_probs=105.9
Q ss_pred cCCCCceEEEEEeCCCCCEEEEecCCCCCCCCCcccCCCCccccceeeeceeEEeecCchhHHHHHhHHHHHHHHHHhcC
Q 038311 7 DGNTKRCGVRLLQGSKGNLATATSIGGMVNKMVGKIGDTPIIGSGTYANNLCAVSATGKGEAIIRHTVARDVAAVMEFKG 86 (207)
Q Consensus 7 ~~~~dTVG~v~~~D~~G~lAaaTSTGG~~~K~pGRVGDSpiiGaG~YAd~~~Avs~TG~GE~iir~~lA~~i~~~m~~~g 86 (207)
+..+||||+|++ |.+|++|++|||||+++|+||||||||+||||+|||+..+|||||+||+|||+++|++|+++|+ .|
T Consensus 179 ~~~~dTVGaVa~-D~~G~iaaatSTGG~~~K~pGRVGdspi~GaG~yAd~~~gvs~TG~GE~iir~~lA~~i~~~~~-~g 256 (319)
T PF01112_consen 179 DSGHDTVGAVAL-DTNGNIAAATSTGGIFFKLPGRVGDSPIIGAGFYADNEVGVSCTGHGEDIIRTLLARRIVERMR-DG 256 (319)
T ss_dssp TCTC--EEEEEE-ETTS-EEEEEEEE-STTB-TTEE-STTSTTTSEEEETTTEEEEEE-HHHHHHTTHHHHHHHHHH-TT
T ss_pred cccCCCeeEEEE-ECCCCEEEEecCCCccceecccccceeecChhheeecccceeccCCHHHHHHhhHHHHHHHHhh-hc
Confidence 336999999998 9999999999999999999999999999999999997766999999999999999999999999 66
Q ss_pred CC-HHHHHHHHHHhhCCCCeEEEEEEecCCCEEEeecCCcceeEEEecCCce
Q 038311 87 LS-LKEASGCVIEECVPRGNVGLIVVSASSEVTMPFNTTGMFRACATEDGYS 137 (207)
Q Consensus 87 ~~-~~~A~~~~i~~~~~~~~gGvI~l~~~G~~~~~~nt~~M~~a~~~~DG~i 137 (207)
.. +.+++.+.|.+.++.+.+|+|++|++|+++++|||++|+++|...|+..
T Consensus 257 ~~~a~~aa~~~i~~~~~~~~~GvIav~~~G~~~~~~n~~~m~~~~~~~~~~~ 308 (319)
T PF01112_consen 257 MQSAAEAAIKRIMEKFPRGTGGVIAVDKKGNIGIAFNSPGMFRYYAVQDGTV 308 (319)
T ss_dssp -HHHHHHHHHHHHHHHHCTSEEEEEEETTS-EEEEESSSCEEEEEEEECTCE
T ss_pred cHHHHHHHHHHHHHhCCCCceEEEEEcCCCCEEEEEecCcceeeEEecCCcc
Confidence 52 4555666665656669999999999999999999999998777777644
No 11
>PLN02937 Putative isoaspartyl peptidase/L-asparaginase
Probab=100.00 E-value=4.1e-38 Score=291.86 Aligned_cols=119 Identities=26% Similarity=0.454 Sum_probs=108.0
Q ss_pred cCCCCceEEEEEeCCCCCEEEEecCCCCCCCCCcccCCCCccccceeeec--------eeEEeecCchhHHHHHhHHHHH
Q 038311 7 DGNTKRCGVRLLQGSKGNLATATSIGGMVNKMVGKIGDTPIIGSGTYANN--------LCAVSATGKGEAIIRHTVARDV 78 (207)
Q Consensus 7 ~~~~dTVG~v~~~D~~G~lAaaTSTGG~~~K~pGRVGDSpiiGaG~YAd~--------~~Avs~TG~GE~iir~~lA~~i 78 (207)
+.+|||||+|++ |.+|++|++|||||+++|+|||||||||||||+|||+ .+||||||+||+|||+++|+++
T Consensus 224 ~~~~dTVGaVal-D~~G~iAAaTSTGG~~~K~pGRVGDSPIiGAG~yAdn~~~~g~~~~~a~saTG~GE~iiR~~~A~~~ 302 (414)
T PLN02937 224 DCIMDTVGVICV-DSEGNIASGASSGGIAMKVSGRVGLAAMYGSGCWASSKGPFGAPFIVGCCVSGAGEYLMRGFAAREC 302 (414)
T ss_pred CCCCCCEEEEEE-eCCCCEEEEECCCccccCCCCccCCCCCCCceeeecCccccccCceEEEeeeccHHHHHHHHHHHHH
Confidence 357899999998 9999999999999999999999999999999999975 4999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhC-------CCCeEEEEEEecCCCEEEeecCCcc
Q 038311 79 AAVMEFKGLSLKEASGCVIEECV-------PRGNVGLIVVSASSEVTMPFNTTGM 126 (207)
Q Consensus 79 ~~~m~~~g~~~~~A~~~~i~~~~-------~~~~gGvI~l~~~G~~~~~~nt~~M 126 (207)
+.+|++.|++|++|++++|++++ .++.+|+|++|++|+++++|||++|
T Consensus 303 ~~~~~~~g~~p~~Aa~~~i~~~~~~~~~~~~~~~gGvI~vd~~g~~~~~~nt~~m 357 (414)
T PLN02937 303 CVSSSLSQAGPASACMKVLRSVIQGSSAKTTDKDAGILLVQADASVMAPGNSPSL 357 (414)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccccccCCceEEEEEeCCCCeecccCCccc
Confidence 99998789999999999998754 2488999999998776666666655
No 12
>KOG1592 consensus Asparaginase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-37 Score=274.20 Aligned_cols=138 Identities=47% Similarity=0.790 Sum_probs=131.5
Q ss_pred ccCCCCceEEEEEeCCCCCEEEEecCCCCCCCCCcccCCCCccccceeee----ceeEEeecCchhHHHHHhHHHHHHHH
Q 038311 6 MDGNTKRCGVRLLQGSKGNLATATSIGGMVNKMVGKIGDTPIIGSGTYAN----NLCAVSATGKGEAIIRHTVARDVAAV 81 (207)
Q Consensus 6 ~~~~~dTVG~v~~~D~~G~lAaaTSTGG~~~K~pGRVGDSpiiGaG~YAd----~~~Avs~TG~GE~iir~~lA~~i~~~ 81 (207)
.|..-||||+||+ |.+||+|++|||||+.+|+||||||||++|||+||+ ..+|||+||+||+|||..+||+++..
T Consensus 181 ~~~~~dTVGaV~v-D~~Gnia~gtSSGGi~lK~~GRiG~sp~yGaG~wA~~~~~~~~avstTG~GE~l~r~~lAR~~~~~ 259 (326)
T KOG1592|consen 181 FDSSLDTVGAVCV-DGEGNIAAGTSSGGIVLKMPGRIGDSPIYGAGTWAENTSERTCAVSTTGHGESLMRTNLAREISTL 259 (326)
T ss_pred cccccCcceEEEE-eCCCCEEEEeccCCeeccccCcccCCcccCccccccCCCcceEEEecCCCcHHHHHHHHHHHHHHH
Confidence 4667799999999 999999999999999999999999999999999997 47999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHhhCC--CCeEEEEEEecCCCEEEeecCCcceeEEEecCCceEEEEecc
Q 038311 82 MEFKGLSLKEASGCVIEECVP--RGNVGLIVVSASSEVTMPFNTTGMFRACATEDGYSHIGIWTS 144 (207)
Q Consensus 82 m~~~g~~~~~A~~~~i~~~~~--~~~gGvI~l~~~G~~~~~~nt~~M~~a~~~~DG~i~igI~~s 144 (207)
|+++|.++++|++.++.++++ ++.+|+|++..+|++++.||+.+|+|+|.++||+.++.|+++
T Consensus 260 l~~~gl~~~~a~~~~~~~~~~~~dg~~Gli~v~~~~~~~~~f~s~~m~w~~~t~~Gy~~~~i~~~ 324 (326)
T KOG1592|consen 260 LEYQGLSLEEAADYVLRPLLAREDGTGGLIVVSASGDVVAPFTSTGMAWAYATEDGYMEYGIEKP 324 (326)
T ss_pred HHhcccCHHHHHHhhhhhhhhhccCcccEEEEEecCCeecccCcchhhhhhhcccceeeecccCC
Confidence 999999999999999988876 899999999999999999999999999999999999999853
No 13
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=99.98 E-value=4.1e-33 Score=200.58 Aligned_cols=53 Identities=49% Similarity=0.641 Sum_probs=52.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 038311 151 LMAASIRGMLRMFQNEWDGLMQSNFASEQQHHTARQELSHALYQVIALEAMLA 203 (207)
Q Consensus 151 ~~~~sip~~l~~~q~ewda~~le~~~~~~~~~~~~~el~~~ly~~da~~~~~~ 203 (207)
|+++|||++|++|||||||+|||+|+|||||+++||||||+||||||||||||
T Consensus 1 ~~~~SIP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViA 53 (70)
T PF08606_consen 1 PTATSIPSLLSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIA 53 (70)
T ss_pred CCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999997
No 14
>KOG1593 consensus Asparaginase [Amino acid transport and metabolism]
Probab=99.97 E-value=1.7e-31 Score=234.84 Aligned_cols=119 Identities=25% Similarity=0.396 Sum_probs=112.2
Q ss_pred ccccCCCCceEEEEEeCCCCCEEEEecCCCCCCCCCcccCCCCccccceeee-ceeEEeecCchhHHHHHhHHHHHHHHH
Q 038311 4 CIMDGNTKRCGVRLLQGSKGNLATATSIGGMVNKMVGKIGDTPIIGSGTYAN-NLCAVSATGKGEAIIRHTVARDVAAVM 82 (207)
Q Consensus 4 ~~~~~~~dTVG~v~~~D~~G~lAaaTSTGG~~~K~pGRVGDSpiiGaG~YAd-~~~Avs~TG~GE~iir~~lA~~i~~~m 82 (207)
-|-+.||||||++++ |..|+++++|||.|..+|+|||||||||||+|.||| ++||+.+||+|+.+|||++++.+++.|
T Consensus 201 ~vg~~nHDTIgM~vi-d~eghi~aGTStNGar~kipGRVGDspIpGagAYAddevGaa~aTGdGDvmMRFLPs~~aVe~M 279 (349)
T KOG1593|consen 201 LVGPTNHDTIGMVVI-DTEGHIAAGTSTNGARFKIPGRVGDSPIPGAGAYADDEVGAAAATGDGDVMMRFLPSYQAVEQM 279 (349)
T ss_pred ccCCCCCCeeeEEEE-eccCceeecccCCCceeecCCccCCCCCCCccccccccccceeecCCchhHHHhhhHHHHHHHH
Confidence 466889999999998 999999999999999999999999999999999997 789999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHhh---CCCCeEEEEEEecCCCEEEeecCC
Q 038311 83 EFKGLSLKEASGCVIEEC---VPRGNVGLIVVSASSEVTMPFNTT 124 (207)
Q Consensus 83 ~~~g~~~~~A~~~~i~~~---~~~~~gGvI~l~~~G~~~~~~nt~ 124 (207)
| +|+.|.||++++|.++ ++.+.+.||++|+.|.++.+|+.-
T Consensus 280 r-~G~~P~eAa~~~i~RI~khfp~F~gAvia~n~~G~ygaaC~g~ 323 (349)
T KOG1593|consen 280 R-AGKKPAEAAQKAISRILKHFPDFSGAVIAANVLGSYGAACYGI 323 (349)
T ss_pred H-cCCChHHHHHHHHHHHHHhCccceeeEEEEeccCchhhhhccc
Confidence 9 9999999999999886 478999999999999998887653
No 15
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=7.5e-30 Score=235.48 Aligned_cols=71 Identities=39% Similarity=0.567 Sum_probs=65.8
Q ss_pred ecCCceEEEEecccCCCCCcccccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 038311 132 TEDGYSHIGIWTSFKKPIPLMAASIRGMLRMFQNEWDGLMQSNFASEQQHHTARQELSHALYQVIALEAMLA 203 (207)
Q Consensus 132 ~~DG~i~igI~~s~VkPrP~~~~sip~~l~~~q~ewda~~le~~~~~~~~~~~~~el~~~ly~~da~~~~~~ 203 (207)
+.|+.+++.+ +..+||+||+++|||++|++||||||++|||+|+|||||+++||||||+||||||||||||
T Consensus 46 s~eelV~Ik~-~~~v~pk~~satSIPalL~~lQdEWDavML~~F~LRqqL~ttrQELShaLYqhDAAcrVia 116 (506)
T KOG0289|consen 46 SIEELVEIKV-PAQVRPKPPSATSIPALLKTLQDEWDAVMLESFTLRQQLQTTRQELSHALYQHDAACRVIA 116 (506)
T ss_pred CHHHeeeccc-cccccCCCCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3456777777 3569999999999999999999999999999999999999999999999999999999997
No 16
>PF06267 DUF1028: Family of unknown function (DUF1028); InterPro: IPR010430 This is a family of bacterial and archaeal proteins with unknown function.; PDB: 2IMH_A.
Probab=84.37 E-value=9.4 Score=32.71 Aligned_cols=125 Identities=18% Similarity=0.196 Sum_probs=64.9
Q ss_pred eCC-CCCEEEEecCCCCCCCCCcccCCCCccccce-eee-ceeEEeecCchhHHHHHhHHHHHHHHHHhcCCCHHHHHHH
Q 038311 19 QGS-KGNLATATSIGGMVNKMVGKIGDTPIIGSGT-YAN-NLCAVSATGKGEAIIRHTVARDVAAVMEFKGLSLKEASGC 95 (207)
Q Consensus 19 ~D~-~G~lAaaTSTGG~~~K~pGRVGDSpiiGaG~-YAd-~~~Avs~TG~GE~iir~~lA~~i~~~m~~~g~~~~~A~~~ 95 (207)
+|. +|.+..+++|+-. -+|+=+ |+. ..|+|++=+. ..-.+.....++|+ .|.++++|++.
T Consensus 7 rdp~tg~~GvAvaS~~~------------aVGa~vp~~~~gvGavaTQ~~----tnp~~g~~~L~ll~-~G~~a~~al~~ 69 (190)
T PF06267_consen 7 RDPETGQFGVAVASSSP------------AVGARVPWARAGVGAVATQAY----TNPRLGPRGLDLLE-AGLSAEEALAA 69 (190)
T ss_dssp E-TTT--EEEEEEESSS-------------HHHHHEEEETTTEEEEEESS----S--HHHHHHHHHHH-TT--HHHHHHH
T ss_pred EcCCCCcEEEEEEecCc------------ccccccccccCCcCEEEeccc----CCHHHHHHHHHHHH-cCCCHHHHHHH
Confidence 365 4888888888643 333322 454 4677776553 34456778889998 99999999999
Q ss_pred HHHhhCCCCeEEEEEEecCCCEEEeecCCcceeEE-EecCCceEEEEecccCCCCCcccccHHHHHHHHHHHH
Q 038311 96 VIEECVPRGNVGLIVVSASSEVTMPFNTTGMFRAC-ATEDGYSHIGIWTSFKKPIPLMAASIRGMLRMFQNEW 167 (207)
Q Consensus 96 ~i~~~~~~~~gGvI~l~~~G~~~~~~nt~~M~~a~-~~~DG~i~igI~~s~VkPrP~~~~sip~~l~~~q~ew 167 (207)
++........-=+.++|++|+.....-.+...|+- ...++. .+-.+. -....-++.|.+.|++.=
T Consensus 70 l~~~D~~~~~RQ~~vvd~~G~~a~~TG~~~~~~~g~~~g~~~---~v~GN~----La~~~V~~Am~~af~~~~ 135 (190)
T PF06267_consen 70 LLAADPGREYRQLAVVDAQGRTAAFTGAECLGWAGHITGDNY---AVAGNM----LAGEEVLEAMADAFEAAT 135 (190)
T ss_dssp HHHT-TTGGG-EEEEEETTS-EEEEE-TTS-SS-EEEEETTE---EEEEES-----S-TCHHHHHHHHHHH--
T ss_pred HHhcCCCcccccEEEECCCCCeEEEECccchhhhhcccCCCE---EEECcc----CCChhHHHHHHHHHHhcc
Confidence 99765433334466789999775555444455532 333332 222111 112344557777766543
No 17
>PLN02180 gamma-glutamyl transpeptidase 4
Probab=76.79 E-value=20 Score=35.98 Aligned_cols=82 Identities=16% Similarity=0.146 Sum_probs=49.4
Q ss_pred CCceEEEEEeCCCCCEEEEecCCCCCCC-----------CCcccCCCCccc------------------cceee------
Q 038311 10 TKRCGVRLLQGSKGNLATATSIGGMVNK-----------MVGKIGDTPIIG------------------SGTYA------ 54 (207)
Q Consensus 10 ~dTVG~v~~~D~~G~lAaaTSTGG~~~K-----------~pGRVGDSpiiG------------------aG~YA------ 54 (207)
+||.-+.++ |.+|+.++.|+|=+..|- +-.|.+|-.+++ ---+.
T Consensus 418 ~~TTh~SVv-D~dGnaVS~T~Si~~~FGSgvv~p~tGi~lNN~m~~Fs~~~~~n~~gl~p~~~N~i~PGKRP~ssmsPtI 496 (639)
T PLN02180 418 QGTSHFCIV-DADRNSVSMTSTVNYGFGAGVLSPSTGIVLNNEMDDFSTPAEITPDMLPPAPTNFIEPNKRPLSSMTPLV 496 (639)
T ss_pred CCCeEEEEE-cCCCCEEEEecccCCCcCCeEEeCCceeEEcCcccccCCCcccccccCCCCCcCcCCCCCCccccCCCeE
Confidence 589888877 999999999999444221 112333333221 11000
Q ss_pred ---e-c-eeEEeecCchhHHHHHhHHHHHHHHHHhcCCCHHHHHHH
Q 038311 55 ---N-N-LCAVSATGKGEAIIRHTVARDVAAVMEFKGLSLKEASGC 95 (207)
Q Consensus 55 ---d-~-~~Avs~TG~GE~iir~~lA~~i~~~m~~~g~~~~~A~~~ 95 (207)
+ + ..++.+.| |..|.-. ++.-+...+. .|+++++|+..
T Consensus 497 v~~~g~~~lalGs~G-G~~I~~a-v~Qviln~l~-~Gm~lq~AI~a 539 (639)
T PLN02180 497 ITKDGEFVAALGGAG-GMHIIPA-VLQVFLNCFV-LNMKPKEAVES 539 (639)
T ss_pred EEeCCcEEEEEECCC-hHHHHHH-HHHHHHHHHh-CCCCHHHHHhc
Confidence 1 1 23445554 6666554 4777777776 89999998864
No 18
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=76.36 E-value=3.7 Score=40.38 Aligned_cols=102 Identities=15% Similarity=0.144 Sum_probs=60.4
Q ss_pred cCCCHHHHHHHHHHh--hCCCCeEEEEEEecCCCEEEeecCCcc-eeEEEecCCceEEEEecccCCCCCcccccHHHHHH
Q 038311 85 KGLSLKEASGCVIEE--CVPRGNVGLIVVSASSEVTMPFNTTGM-FRACATEDGYSHIGIWTSFKKPIPLMAASIRGMLR 161 (207)
Q Consensus 85 ~g~~~~~A~~~~i~~--~~~~~~gGvI~l~~~G~~~~~~nt~~M-~~a~~~~DG~i~igI~~s~VkPrP~~~~sip~~l~ 161 (207)
.|+.|+|-++-.-++ ++..-.-|+|++|++|.+. .+|-... .+++....+.+-........ || .+-+|..|+
T Consensus 203 ~glEP~EIa~l~~er~A~l~si~EGviAvd~~G~It-~~N~~A~~ll~~~~~~~~~ig~~i~~v~---~p-~~~l~~vl~ 277 (537)
T COG3290 203 LGLEPEEIATLLEERQAMLQSIKEGVIAVDKKGVIT-LINQAAQKLLGLRQPSGDPIGRSIVEVL---PP-DSDLPEVLE 277 (537)
T ss_pred hCCCHHHHHHHHHHHHHHHHHhhceEEEECCCCeEe-ehhHHHHHHhcccCcCcccccccceEee---cc-ccCcHHHHh
Confidence 489999988766544 2456778999999999874 3444421 23333322111110110111 22 577888888
Q ss_pred HHHHHHHHHH-----------------------HHhhhhHHHHHHHHHHHHHH
Q 038311 162 MFQNEWDGLM-----------------------QSNFASEQQHHTARQELSHA 191 (207)
Q Consensus 162 ~~q~ewda~~-----------------------le~~~~~~~~~~~~~el~~~ 191 (207)
..|.+.|-.. .-+|..|-+..++-+||++.
T Consensus 278 ~~~~~~~~e~~~ng~~~i~nr~pI~~~~~~~GaI~tFRdktei~~L~eqLt~v 330 (537)
T COG3290 278 TGKPQHDEEIRINGRLLVANRVPIRSGGQIVGAIITFRDKTEIKKLTEQLTGV 330 (537)
T ss_pred cCCcccchhhhcCCeEEEEEeccEEECCEEeEEEEEEecHHHHHHHHHHHHHH
Confidence 8888887665 12466666666666666553
No 19
>TIGR00066 g_glut_trans gamma-glutamyltranspeptidase. Also called gamma-glutamyltranspeptidase (ggt). Some members of this family have antibiotic synthesis or resistance activities. In the case of a cephalosporin acylase from Pseudomonas sp., the enzyme was shown to retain some gamma-glutamyltranspeptidase activity. Other, more distantly related proteins have ggt-related activities and score below the trusted cutoff.
Probab=73.17 E-value=27 Score=33.86 Aligned_cols=82 Identities=17% Similarity=0.236 Sum_probs=48.4
Q ss_pred CCceEEEEEeCCCCCEEEEecCCCCCCC-----------CCcccCCCCc-cccceee-----------------e-c-ee
Q 038311 10 TKRCGVRLLQGSKGNLATATSIGGMVNK-----------MVGKIGDTPI-IGSGTYA-----------------N-N-LC 58 (207)
Q Consensus 10 ~dTVG~v~~~D~~G~lAaaTSTGG~~~K-----------~pGRVGDSpi-iGaG~YA-----------------d-~-~~ 58 (207)
++|.=+.++ |.+|+.++.|||=+..|- +-.|.+|-.+ +|.-.+- + + ..
T Consensus 342 ~~TTh~svv-D~dGnaVs~t~Si~~~FGSg~~~~~tGi~lNN~~~~F~~~p~~~N~~~PgKRP~stmsP~iv~~~~~~~l 420 (516)
T TIGR00066 342 SQTTHFSVV-DRDGNAVSLTTTINLEFGSGVHAPDTGILLNNEMDDFSLKPGGANAVEPNKRPLSSMAPTIVLKDGKPDL 420 (516)
T ss_pred CCCEEEEEE-cCCCCEEEEEeccCCCCCCeEEeCCceEEEcccccccCCCCCCCCcCCCCCccccccCcceEEECCceEE
Confidence 588888887 999999999999544321 1122333221 2211111 0 0 11
Q ss_pred EEeecCchhHHHHHhHHHHHHHHHHhcCCCHHHHHHH
Q 038311 59 AVSATGKGEAIIRHTVARDVAAVMEFKGLSLKEASGC 95 (207)
Q Consensus 59 Avs~TG~GE~iir~~lA~~i~~~m~~~g~~~~~A~~~ 95 (207)
++.+ -|=.-|....+.-++..+. .|+++++|+..
T Consensus 421 ~~Gs--~GG~~i~~~~~qvl~~~l~-~gm~l~~AI~a 454 (516)
T TIGR00066 421 VVGS--PGGSRIITTVLQTIVRHID-YGMPLAEAVSE 454 (516)
T ss_pred EEeC--CCchHHHHHHHHHHHHHHH-cCCCHHHHHhc
Confidence 2222 2445566677777888876 89999998864
No 20
>PF01019 G_glu_transpept: Gamma-glutamyltranspeptidase; InterPro: IPR000101 Gamma-glutamyltranspeptidase (2.3.2.2 from EC) (GGT) [] catalyzes the transfer of the gamma-glutamyl moiety of glutathione to an acceptor that may be an amino acid, a peptide or water (forming glutamate). GGT plays a key role in the gamma-glutamyl cycle, a pathway for the synthesis and degradation of glutathione and drug and xenobiotic detoxification []. In prokaryotes and eukaryotes, it is an enzyme that consists of two polypeptide chains, a heavy and a light subunit, processed from a single chain precursor by an autocatalytic cleavage. The active site of GGT is known to be located in the light subunit. The sequences of mammalian and bacterial GGT show a number of regions of high similarity []. Pseudomonas cephalosporin acylases (3.5.1 from EC) that convert 7-beta-(4-carboxybutanamido)-cephalosporanic acid (GL-7ACA) into 7-aminocephalosporanic acid (7ACA) and glutaric acid are evolutionary related to GGT and also show some GGT activity []. Like GGT, these GL-7ACA acylases, are also composed of two subunits. As an autocatalytic peptidase GGT belongs to MEROPS peptidase family T3 (gamma-glutamyltransferase family, clan PB(T)). The active site residue for members of this family and family T1 is C-terminal to the autolytic cleavage site. The type example is gamma-glutamyltransferase 1 from Escherichia coli. ; GO: 0003840 gamma-glutamyltransferase activity; PDB: 2DBX_A 2Z8K_D 2Z8I_B 2DBU_D 2E0X_B 2DBW_B 2E0W_B 2DG5_A 2E0Y_C 2Z8J_C ....
Probab=72.12 E-value=17 Score=35.03 Aligned_cols=83 Identities=19% Similarity=0.276 Sum_probs=49.2
Q ss_pred CCCceEEEEEeCCCCCEEEEecCCCCCCC-----------CCcccCCCC------ccccceeee----------------
Q 038311 9 NTKRCGVRLLQGSKGNLATATSIGGMVNK-----------MVGKIGDTP------IIGSGTYAN---------------- 55 (207)
Q Consensus 9 ~~dTVG~v~~~D~~G~lAaaTSTGG~~~K-----------~pGRVGDSp------iiGaG~YAd---------------- 55 (207)
.+||.-++++ |++||..+.|+|-+..|- +..|.++-. .++.-.+.-
T Consensus 324 ~~~Tth~svv-D~~Gn~Vs~t~Si~~~FGSg~~~p~tG~~lNn~~~~F~~~~~~~~~~~~N~~~PgkRp~st~~P~iv~~ 402 (510)
T PF01019_consen 324 DGDTTHFSVV-DKDGNAVSLTQSIGSPFGSGVVVPGTGFLLNNRMSDFSPNPFGLDPGHPNALAPGKRPLSTMSPTIVFK 402 (510)
T ss_dssp TTEEEEEEEE-ETTS-EEEEEEEESSTTTTSEBETTTTEBE--GGGGSB--TTSSSTTSTTB--TT-B--B----EEEEE
T ss_pred CCCceeeeeE-CCCCCEEEeccccCCCCCccEecCcccccccccCcccccCccCCCCCCCCccccCCCCCccccceeEEe
Confidence 6788888888 999999999999876442 122222222 111100000
Q ss_pred --c-eeEEeecCchhHHHHHhHHHHHHHHHHhcCCCHHHHHHH
Q 038311 56 --N-LCAVSATGKGEAIIRHTVARDVAAVMEFKGLSLKEASGC 95 (207)
Q Consensus 56 --~-~~Avs~TG~GE~iir~~lA~~i~~~m~~~g~~~~~A~~~ 95 (207)
+ ..++.+.| |..| -...+.-++..+. .|+++++|+..
T Consensus 403 ~g~~~l~~Gs~G-G~~i-~~~~~qvl~~~l~-~g~~l~~AI~a 442 (510)
T PF01019_consen 403 DGKPVLAIGSPG-GDRI-PQAVAQVLLNYLD-FGMDLQEAIAA 442 (510)
T ss_dssp TTEEEEEEEEES-GGGH-HHHHHHHHHHHHT-TSS-HHHHHHS
T ss_pred cCCccEEeeccc-cccc-chhHHhhhhhhhc-CCCChhhhhcC
Confidence 0 24556666 6666 5556677777776 79999998754
No 21
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=70.55 E-value=8.8 Score=25.45 Aligned_cols=29 Identities=17% Similarity=0.294 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 038311 160 LRMFQNEWDGLMQSNFASEQQHHTARQEL 188 (207)
Q Consensus 160 l~~~q~ewda~~le~~~~~~~~~~~~~el 188 (207)
...|.++||++..|+=.|+.++..++..|
T Consensus 14 yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 14 YDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566666666666666666666655443
No 22
>COG5324 Uncharacterized conserved protein [Function unknown]
Probab=68.63 E-value=4.4 Score=40.04 Aligned_cols=37 Identities=24% Similarity=0.178 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhh
Q 038311 161 RMFQNEWDGLMQSNFASEQQHHTARQELSHALYQVIA 197 (207)
Q Consensus 161 ~~~q~ewda~~le~~~~~~~~~~~~~el~~~ly~~da 197 (207)
..+|+-||+.=.|.-++-||...+||||+|-||.+|-
T Consensus 141 di~~shad~gE~~l~~~L~~~~~~k~e~a~~l~~~n~ 177 (758)
T COG5324 141 DIFQSHADKGESELKELLKQTGRTKQELAHELIENNC 177 (758)
T ss_pred chhHHHHHHHHHHHHHHHHHhCccHHHHHHHHHhcCC
Confidence 4689999999888777777777789999999999983
No 23
>PLN02198 glutathione gamma-glutamylcysteinyltransferase
Probab=67.93 E-value=40 Score=33.34 Aligned_cols=83 Identities=14% Similarity=0.026 Sum_probs=50.0
Q ss_pred CCceEEEEEeCCCCCEEEEecCCCCCC-----------CCCcccCCCCccccc--------------------eee----
Q 038311 10 TKRCGVRLLQGSKGNLATATSIGGMVN-----------KMVGKIGDTPIIGSG--------------------TYA---- 54 (207)
Q Consensus 10 ~dTVG~v~~~D~~G~lAaaTSTGG~~~-----------K~pGRVGDSpiiGaG--------------------~YA---- 54 (207)
++|.-+.++ |++|+.++.|+|=+..| -+--|.+|-.+++-. -+.
T Consensus 367 ~~TTh~sVv-D~dGnaVS~T~Si~~~FGSgv~~p~tGi~lNN~m~~F~~~~~~~~~~~~~~~~~~N~i~PGKRP~ssmsP 445 (573)
T PLN02198 367 HGTSHLSII-DSERNAVSMTSTINGYFGALMLSPSTGIVLNNEMDDFSIPMKSGGNLDVPPPAPANFIRPGKRPLSSMTP 445 (573)
T ss_pred CCCEEEEEE-CCCCCEEEEeeccCCCCCCeEEeCCCceEEecCccccCCCCCCCCcccccCCCCCCcCCCCCcccccCCC
Confidence 689988887 99999999999944322 222344444333211 010
Q ss_pred -----ec--eeEEeecCchhHHHHHhHHHHHHHHHHhcCCCHHHHHHHH
Q 038311 55 -----NN--LCAVSATGKGEAIIRHTVARDVAAVMEFKGLSLKEASGCV 96 (207)
Q Consensus 55 -----d~--~~Avs~TG~GE~iir~~lA~~i~~~m~~~g~~~~~A~~~~ 96 (207)
+. ..++.+. |=.-|....+.-++..+. .|+++++|+..-
T Consensus 446 tIv~~~g~~~l~lGa~--GG~~i~~a~~qvi~~~l~-~gm~l~~AI~aP 491 (573)
T PLN02198 446 TIVLKDGKVKAAVGAS--GGANIIAGTTEVYLNHFF-LKMDPLSSVLAP 491 (573)
T ss_pred eEEEECCcEEEEEECC--CchhHHHHHHHHHHHHHh-CCCCHHHHHhcC
Confidence 00 1222222 434556667777787776 899999998643
No 24
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.93 E-value=13 Score=33.93 Aligned_cols=39 Identities=23% Similarity=0.173 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhh
Q 038311 160 LRMFQNEWDGLMQSNFASEQQHHTARQELSHALYQVIAL 198 (207)
Q Consensus 160 l~~~q~ewda~~le~~~~~~~~~~~~~el~~~ly~~da~ 198 (207)
....++--.++|-|.-+++|++.+.++||+++||.--..
T Consensus 131 ~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~ 169 (300)
T KOG2629|consen 131 FDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNT 169 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444457889999999999999999999999976544
No 25
>PRK09615 ggt gamma-glutamyltranspeptidase; Reviewed
Probab=65.96 E-value=41 Score=33.34 Aligned_cols=83 Identities=17% Similarity=0.211 Sum_probs=50.3
Q ss_pred CCceEEEEEeCCCCCEEEEecCCCCCC-----------CCCcccCCCCc-cccce-----------ee------------
Q 038311 10 TKRCGVRLLQGSKGNLATATSIGGMVN-----------KMVGKIGDTPI-IGSGT-----------YA------------ 54 (207)
Q Consensus 10 ~dTVG~v~~~D~~G~lAaaTSTGG~~~-----------K~pGRVGDSpi-iGaG~-----------YA------------ 54 (207)
+||.-+.++ |++||.++.|+|=+..| -+--|.+|-.+ +|.-. ++
T Consensus 390 ~~TTh~sVv-D~~GnaVS~T~Si~~~FGSgv~~pgtGi~lNN~m~~Fs~~pg~~n~~g~~~~~~N~i~PGKRP~stmsPt 468 (581)
T PRK09615 390 NQTTHFSVV-DKDGNAVAVTYTLNTTFGTGIVAGNSGILLNNQMDDFSAKPGVPNVYGLVGGDANAVGPNKRPLSSMSPT 468 (581)
T ss_pred CCCEEEEEE-cCCCCEEEEEcccCcCcCceEEeCCceeEEcCcccccCCCCCCCccccCCCCCcCcCCCCCcccccCCCe
Confidence 589888887 99999999999943322 12224444432 44211 11
Q ss_pred ----e-ceeEEeecCchhHHHHHhHHHHHHHHHHhcCCCHHHHHHH
Q 038311 55 ----N-NLCAVSATGKGEAIIRHTVARDVAAVMEFKGLSLKEASGC 95 (207)
Q Consensus 55 ----d-~~~Avs~TG~GE~iir~~lA~~i~~~m~~~g~~~~~A~~~ 95 (207)
+ +..-+-.+. |=.-|....+.-++..+. .|+++++|+..
T Consensus 469 iv~~~g~~~la~Gs~-GG~~i~~a~~qvi~n~l~-~gm~l~~AV~a 512 (581)
T PRK09615 469 IVVKDGKTWLVTGSP-GGSRIITTVLQMVVNSID-YGMNVAEATNA 512 (581)
T ss_pred EEEECCcEEEEEECC-CchHHHHHHHHHHHHHHh-CCCCHHHHHhC
Confidence 0 011222232 445556667788888886 89999999864
No 26
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=64.31 E-value=14 Score=28.79 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 038311 158 GMLRMFQNEWDGLMQSNFASEQQHHTARQELSHA 191 (207)
Q Consensus 158 ~~l~~~q~ewda~~le~~~~~~~~~~~~~el~~~ 191 (207)
.-+..|..+|..++-||-.||-.++.+|..|...
T Consensus 22 ~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 22 EELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788999999999999999999999888764
No 27
>PF05499 DMAP1: DNA methyltransferase 1-associated protein 1 (DMAP1); InterPro: IPR008468 DNA methylation can contribute to transcriptional silencing through several transcriptionally repressive complexes, which include methyl-CpG binding domain proteins (MBDs) and histone deacetylases (HDACs). The chief enzyme that maintains mammalian DNA methylation, DNMT1, can also establish a repressive transcription complex. The non-catalytic N terminus of DNMT1 binds to HDAC2 and DMAP1 (for DNMT1 associated protein), and can mediate transcriptional repression. DMAP1 has intrinsic transcription repressive activity, and binds to the transcriptional co-repressor TSG101. DMAP1 is targeted to replication foci through interaction with the far N terminus of DNMT1 throughout S phase, whereas HDAC2 joins DNMT1 and DMAP1 only during late S phase, providing a platform for how histones may become deacetylated in heterochromatin following replication [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=62.11 E-value=24 Score=30.01 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=42.3
Q ss_pred CCCCCcccccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 038311 146 KKPIPLMAASIRGMLRMFQNEWDGLMQSNFASEQQHHTARQELSHALYQVIALE 199 (207)
Q Consensus 146 VkPrP~~~~sip~~l~~~q~ewda~~le~~~~~~~~~~~~~el~~~ly~~da~~ 199 (207)
+.|+|++..+|=-....|+++ |+=.|.||++++...-||..-=+||+|.+
T Consensus 119 v~~~PmPTe~Ic~~fneLRsd----ivlL~eLk~a~~~~E~El~~lr~r~eal~ 168 (176)
T PF05499_consen 119 VDLNPMPTEEICQEFNELRSD----IVLLYELKQALQNCEYELQSLRHRYEALA 168 (176)
T ss_pred CCCCCCChHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHhhC
Confidence 467888888888777777765 67789999999999999999999999865
No 28
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=56.23 E-value=25 Score=23.26 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 038311 161 RMFQNEWDGLMQSNFASEQQHHTARQELS 189 (207)
Q Consensus 161 ~~~q~ewda~~le~~~~~~~~~~~~~el~ 189 (207)
..|...+|++..++=.|.++.+.++.|+.
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~aev~ 36 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRAEVQ 36 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999999998864
No 29
>KOG4467 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.73 E-value=13 Score=35.31 Aligned_cols=49 Identities=22% Similarity=0.387 Sum_probs=33.4
Q ss_pred ccHHHHHHHHHHHHHHHH-----HHhhhhHHHHHHHHH---------HHHHHHhhh-hhhhhhhh
Q 038311 154 ASIRGMLRMFQNEWDGLM-----QSNFASEQQHHTARQ---------ELSHALYQV-IALEAMLA 203 (207)
Q Consensus 154 ~sip~~l~~~q~ewda~~-----le~~~~~~~~~~~~~---------el~~~ly~~-da~~~~~~ 203 (207)
.|+ +.|+.+-.||.-.- -|.|+|-+.+..+|+ ..+++||.| |-+|+||+
T Consensus 432 aSV-avLkkll~ewkE~svkL~p~~~ltlN~tmkslr~kneEaltegg~~~slyk~adk~Ck~i~ 495 (557)
T KOG4467|consen 432 ASV-AVLKKLLGEWKELSVKLLPAETLTLNVTMKSLRHKNEEALTEGGVSQSLYKHADKACKVIA 495 (557)
T ss_pred hHH-HHHHHHHHHHHhcccccCchhhhHHhhhHHHHHHHHHHHHHhcccchhHHHHHHHHHHhhc
Confidence 444 35667778995432 366776666666555 357788976 89999997
No 30
>PRK10884 SH3 domain-containing protein; Provisional
Probab=54.43 E-value=86 Score=27.04 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=33.4
Q ss_pred ccCCCCCcccccHHHH----------HHHHHHHHHHHHHHhhh-----------hHHHHHHHHHHHHHHHhhhhhh
Q 038311 144 SFKKPIPLMAASIRGM----------LRMFQNEWDGLMQSNFA-----------SEQQHHTARQELSHALYQVIAL 198 (207)
Q Consensus 144 s~VkPrP~~~~sip~~----------l~~~q~ewda~~le~~~-----------~~~~~~~~~~el~~~ly~~da~ 198 (207)
+...+.|+...-+|.+ |..++++||...-|.=+ |+++++++++||..+--+.|.+
T Consensus 83 ~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 83 KQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred HHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777766666655 66667778765544333 6666666666666555444443
No 31
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=53.83 E-value=45 Score=26.71 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHHH-------HHHHHHhhhhHHHHHHHHHHHH
Q 038311 155 SIRGMLRMFQNEW-------DGLMQSNFASEQQHHTARQELS 189 (207)
Q Consensus 155 sip~~l~~~q~ew-------da~~le~~~~~~~~~~~~~el~ 189 (207)
++||.|.=||.|| -+--+|--.|+.....+.=|..
T Consensus 1 TLpGVl~fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r 42 (134)
T PF08232_consen 1 TLPGVLHFLQTEWHRFERDRNQWEIERAEMKARIAFLEGERR 42 (134)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999 3345666777766666655544
No 32
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=52.96 E-value=39 Score=28.17 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=29.5
Q ss_pred eeEEeecCchhHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHhhCCCCeEEEEEEecCCCEEEee
Q 038311 57 LCAVSATGKGEAIIRHTVARDVAAVMEFKGLSLKEASGCVIEECVPRGNVGLIVVSASSEVTMPF 121 (207)
Q Consensus 57 ~~Avs~TG~GE~iir~~lA~~i~~~m~~~g~~~~~A~~~~i~~~~~~~~gGvI~l~~~G~~~~~~ 121 (207)
.+=+..||.|.+ .+++.+++.+. . .....+|++|..|+|...+
T Consensus 26 ~~I~G~TGsGKS----~~~~~ll~~l~-~-----------------~~~~~~ii~D~~GEY~~~~ 68 (229)
T PF01935_consen 26 IAIFGTTGSGKS----NTVKVLLEELL-K-----------------KKGAKVIIFDPHGEYASLF 68 (229)
T ss_pred EEEECCCCCCHH----HHHHHHHHHHH-h-----------------cCCCCEEEEcCCCcchhhh
Confidence 355678999964 45555554443 1 3445899999999997777
No 33
>PRK02195 V-type ATP synthase subunit D; Provisional
Probab=50.81 E-value=42 Score=28.66 Aligned_cols=44 Identities=11% Similarity=0.047 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 038311 160 LRMFQNEWDGLMQSNFASEQQHHTARQELSHALYQVIALEAMLA 203 (207)
Q Consensus 160 l~~~q~ewda~~le~~~~~~~~~~~~~el~~~ly~~da~~~~~~ 203 (207)
+..|+.-=|+++.|-+++..+..++|+|+...+........+..
T Consensus 26 ~~lLk~KR~~Li~e~~~~~~~~~~lr~~~~~~~~~a~~~l~~a~ 69 (201)
T PRK02195 26 LPTLKLKKAQLQAEVRRAKAEAAELEQEYQKLRQAIEAWISLFS 69 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777999999999999999999999776655554444433
No 34
>COG1446 Asparaginase [Amino acid transport and metabolism]
Probab=49.81 E-value=19 Score=33.17 Aligned_cols=28 Identities=25% Similarity=0.462 Sum_probs=25.2
Q ss_pred CCeEEEEEEecCCCEEEeecCCcceeEE
Q 038311 103 RGNVGLIVVSASSEVTMPFNTTGMFRAC 130 (207)
Q Consensus 103 ~~~gGvI~l~~~G~~~~~~nt~~M~~a~ 130 (207)
.++.|++++|++|++..+.+|.+|++-.
T Consensus 174 ~gTVGaVAlD~~G~lAaaTSTGG~~~k~ 201 (307)
T COG1446 174 HGTVGAVALDADGNLAAATSTGGVFLKR 201 (307)
T ss_pred CCceeEEEEeCCCcEEEEEccCccccCC
Confidence 4789999999999999999999987754
No 35
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=46.64 E-value=1.1e+02 Score=25.70 Aligned_cols=69 Identities=17% Similarity=0.237 Sum_probs=49.6
Q ss_pred ceeEEEecCCceEEEEecccCCCCCcccccHHHHHHH-HHHHHHHHHHHhhhhHHHHH------HHHHHHHHHHhhhh
Q 038311 126 MFRACATEDGYSHIGIWTSFKKPIPLMAASIRGMLRM-FQNEWDGLMQSNFASEQQHH------TARQELSHALYQVI 196 (207)
Q Consensus 126 M~~a~~~~DG~i~igI~~s~VkPrP~~~~sip~~l~~-~q~ewda~~le~~~~~~~~~------~~~~el~~~ly~~d 196 (207)
|.+......|.+.++|..+... |.-+--|..-|.. |-.+|+.++.-...+|+++. ..|+++=..++..|
T Consensus 108 f~~Pa~~~~g~l~iaIsT~G~s--P~la~~lr~~ie~~~~~~~~~~~~~~~~~R~~~k~~~~~~~~R~~~~~~~~~~~ 183 (202)
T PRK06718 108 VVFPSALHRGKLTISVSTDGAS--PKLAKKIRDELEALYDESYESYIDFLYECRQKIKELQIEKREKQILLQEVLSSE 183 (202)
T ss_pred EEEeeEEEcCCeEEEEECCCCC--hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhh
Confidence 3444444567888999765554 5555667777776 67899999999999999884 46777766666554
No 36
>PRK14127 cell division protein GpsB; Provisional
Probab=45.70 E-value=44 Score=26.20 Aligned_cols=41 Identities=5% Similarity=0.116 Sum_probs=35.5
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038311 150 PLMAASIRGMLRMFQNEWDGLMQSNFASEQQHHTARQELSH 190 (207)
Q Consensus 150 P~~~~sip~~l~~~q~ewda~~le~~~~~~~~~~~~~el~~ 190 (207)
--...-+-.-|...-.+|+++..|+-.|+.++..++++|..
T Consensus 22 GYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e 62 (109)
T PRK14127 22 GYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDE 62 (109)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677889999999999999999999999999998864
No 37
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=45.37 E-value=47 Score=24.36 Aligned_cols=38 Identities=11% Similarity=0.224 Sum_probs=30.7
Q ss_pred cCCCCCcccccHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 038311 145 FKKPIPLMAASIRGMLRMFQNEWDGLMQSNFASEQQHH 182 (207)
Q Consensus 145 ~VkPrP~~~~sip~~l~~~q~ewda~~le~~~~~~~~~ 182 (207)
..+|.-++...+-.+|..||+|.+-+=+|...|..++.
T Consensus 4 t~r~s~~p~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~ 41 (79)
T PF06657_consen 4 TSRPSQSPGEALSEVLKALQDEFGHMKMEHQELQDEYK 41 (79)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778899999999999999988888877744444
No 38
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=43.12 E-value=91 Score=23.01 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 038311 156 IRGMLRMFQNEWDGLMQSNFASEQQHHTAR 185 (207)
Q Consensus 156 ip~~l~~~q~ewda~~le~~~~~~~~~~~~ 185 (207)
+.-+|..+..|+|+++-|....|.+-+...
T Consensus 2 l~elLd~ir~Ef~~~~~e~~~~k~~~~e~e 31 (79)
T PF08581_consen 2 LNELLDAIRQEFENLSQEANSYKHQKDEYE 31 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 346899999999999998877766554443
No 39
>smart00338 BRLZ basic region leucin zipper.
Probab=42.36 E-value=64 Score=22.11 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038311 159 MLRMFQNEWDGLMQSNFASEQQHHTARQELSH 190 (207)
Q Consensus 159 ~l~~~q~ewda~~le~~~~~~~~~~~~~el~~ 190 (207)
-+..|+.+=..+.-|+-.|+.+++.+++|+..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~ 58 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEK 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888899999888888888764
No 40
>PF09631 Sen15: Sen15 protein; InterPro: IPR018593 The Sen15 subunit of the tRNA intron-splicing endonuclease is one of the two structural subunits of this heterotetrameric enzyme. Residues 36-157 of this subunit possess a novel homodimeric fold. Each monomer consists of three alpha-helices and a mixed antiparallel/parallel beta-sheet. Two monomers of Sen15 fold with two monomers of Sen34, one of the two catalytic subunits, to form an alpha2-beta2 tetramer as part of the functional endonuclease assembly []. ; PDB: 2GW6_B.
Probab=41.99 E-value=23 Score=26.80 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=13.1
Q ss_pred CCcceeEEEecCC-ceEEEEecccCCCCC
Q 038311 123 TTGMFRACATEDG-YSHIGIWTSFKKPIP 150 (207)
Q Consensus 123 t~~M~~a~~~~DG-~i~igI~~s~VkPrP 150 (207)
+..+..|.+++|+ .+.+.++.+.+|||+
T Consensus 72 ~~ri~LAiv~~DsTiVYY~i~~GivkP~~ 100 (101)
T PF09631_consen 72 PKRILLAIVDDDSTIVYYKIHDGIVKPRQ 100 (101)
T ss_dssp --EEEEEEE-TTS-EEEEEEE--------
T ss_pred CcEEEEEEEcCCCCEEEEEEeCCccCCCC
Confidence 6677889998887 455778888999987
No 41
>COG3342 Uncharacterized conserved protein [Function unknown]
Probab=41.84 E-value=66 Score=28.99 Aligned_cols=56 Identities=16% Similarity=0.247 Sum_probs=38.9
Q ss_pred CCccccceeee-ceeEEeecCchhHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHhhC--CCCeEEEE
Q 038311 45 TPIIGSGTYAN-NLCAVSATGKGEAIIRHTVARDVAAVMEFKGLSLKEASGCVIEECV--PRGNVGLI 109 (207)
Q Consensus 45 SpiiGaG~YAd-~~~Avs~TG~GE~iir~~lA~~i~~~m~~~g~~~~~A~~~~i~~~~--~~~~gGvI 109 (207)
+++| |+. .+|||++- .+-...+...+.++|+ +|.+++||++..++..- ...+.|++
T Consensus 28 a~vP----~~~a~~GAvATQ----s~an~~~G~~gld~L~-~G~~~~eal~~ll~~d~~~~~RQvgvV 86 (265)
T COG3342 28 AIVP----WAKAGVGAVATQ----SYANPALGSAGLDLLA-QGLAAEEALAQLLNSDDERELRQVGVV 86 (265)
T ss_pred cccc----ccccCcceeeee----hhcccccchHHHHHHH-ccCCHHHHHHHHHccCcchhheeeeEE
Confidence 5566 776 56777654 4445566777889998 99999999999987532 23455544
No 42
>PLN02689 Bifunctional isoaspartyl peptidase/L-asparaginase
Probab=40.88 E-value=30 Score=31.86 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=24.9
Q ss_pred CCeEEEEEEecCCCEEEeecCCcceeEE
Q 038311 103 RGNVGLIVVSASSEVTMPFNTTGMFRAC 130 (207)
Q Consensus 103 ~~~gGvI~l~~~G~~~~~~nt~~M~~a~ 130 (207)
.++.|++++|.+|++..+.+|.++.+-+
T Consensus 186 ~dTVGaValD~~G~lAaaTSTGG~~~K~ 213 (318)
T PLN02689 186 PETVGCVAVDSDGNCAAATSTGGLVNKM 213 (318)
T ss_pred CCcEEEEEEeCCCCEEEEECCCCccCCC
Confidence 3789999999999999999999987743
No 43
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=40.76 E-value=44 Score=23.16 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=27.1
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 038311 150 PLMAASIRGMLRMFQNEWDGLMQSNFASEQQHHT 183 (207)
Q Consensus 150 P~~~~sip~~l~~~q~ewda~~le~~~~~~~~~~ 183 (207)
|+....|-..++.|++.|+.+--..-.-++.|++
T Consensus 72 ~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~Lee 105 (105)
T PF00435_consen 72 PEDSDEIQEKLEELNQRWEALCELVEERRQKLEE 105 (105)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 6677889999999999999987776666666653
No 44
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=40.13 E-value=74 Score=26.31 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=26.7
Q ss_pred ceeEEEecCCceEEEEecccCCCCCccccc---HHHHHHHHHHHHHHHHHH
Q 038311 126 MFRACATEDGYSHIGIWTSFKKPIPLMAAS---IRGMLRMFQNEWDGLMQS 173 (207)
Q Consensus 126 M~~a~~~~DG~i~igI~~s~VkPrP~~~~s---ip~~l~~~q~ewda~~le 173 (207)
|.+||..+++.-+- ..+..+|||+++.. =|.=+..|+.|.+.+-.+
T Consensus 1 ms~aF~~e~~~~~~--~~~~~~~r~~~~~~~~lT~~G~~~L~~El~~L~~~ 49 (160)
T PRK06342 1 MSVAFTKEESAETA--AETLLPDRPISPHPNLVTEAGLKALEDQLAQARAA 49 (160)
T ss_pred CCccccCCCCcccc--ccccCCCCCCCCCCceECHHHHHHHHHHHHHHHHH
Confidence 77888876653210 01224567753333 366788888888877533
No 45
>PF11043 DUF2856: Protein of unknown function (DUF2856); InterPro: IPR020500 This phage protein modulates the activity of the host recBCD nuclease and thus protects the linear double stranded DNA from exonuclease degradation [].
Probab=39.58 E-value=1.2e+02 Score=22.93 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=24.9
Q ss_pred cCCCCCcccccHHHHHHHHHHHHHHHHH
Q 038311 145 FKKPIPLMAASIRGMLRMFQNEWDGLMQ 172 (207)
Q Consensus 145 ~VkPrP~~~~sip~~l~~~q~ewda~~l 172 (207)
...|+-.+..|+...|..|.+.+|++|.
T Consensus 8 ~ddp~rCSGnSvsEVL~~~k~N~D~~~a 35 (97)
T PF11043_consen 8 ADDPRRCSGNSVSEVLDNIKNNYDAFMA 35 (97)
T ss_pred CCCcccccCccHHHHHHHHHHHHHHHHc
Confidence 3468888999999999999999999984
No 46
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=39.55 E-value=62 Score=28.49 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=35.5
Q ss_pred cccccHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 038311 151 LMAASIRGML-RMFQNEWDGLMQSNFASEQQHHTARQELSHALYQ 194 (207)
Q Consensus 151 ~~~~sip~~l-~~~q~ewda~~le~~~~~~~~~~~~~el~~~ly~ 194 (207)
....+|..-| +...+|.+.+=-|+=+|+-.|+++|+.|.|-+=.
T Consensus 101 ~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr~ei~~ 145 (220)
T KOG3156|consen 101 VDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLRHEISK 145 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556777654 4556899999999999999999999999886644
No 47
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=39.54 E-value=6.2 Score=24.28 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=11.6
Q ss_pred CCCEEEEecCCCCCCCCC
Q 038311 22 KGNLATATSIGGMVNKMV 39 (207)
Q Consensus 22 ~G~lAaaTSTGG~~~K~p 39 (207)
+|.+..+.||+|..-++.
T Consensus 2 ~g~LqI~ISTnG~sP~la 19 (30)
T PF14824_consen 2 RGPLQIAISTNGKSPRLA 19 (30)
T ss_dssp -TTEEEEEEESSS-HHHH
T ss_pred CCCeEEEEECCCCChHHH
Confidence 577888888888765443
No 48
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=38.80 E-value=35 Score=30.70 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=25.7
Q ss_pred CCCeEEEEEEecCCCEEEeecCCcceeEE
Q 038311 102 PRGNVGLIVVSASSEVTMPFNTTGMFRAC 130 (207)
Q Consensus 102 ~~~~gGvI~l~~~G~~~~~~nt~~M~~a~ 130 (207)
..+..|++++|++|++..+.+|.++++-+
T Consensus 136 ~~dTVGaValD~~G~laaatSTGG~~~K~ 164 (263)
T cd04513 136 NHDTIGMIALDANGNIAAGTSTSGAAFKI 164 (263)
T ss_pred CCCCEEEEEEeCCCCEEEEECCCCccCcc
Confidence 45899999999999999999999987743
No 49
>PF02865 STAT_int: STAT protein, protein interaction domain; InterPro: IPR013799 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the N-terminal domain, which is responsible for protein interactions. This domain has a multi-helical structure that can be subdivided into two structural sub-domains.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction; PDB: 1BGF_A 1YVL_A.
Probab=37.62 E-value=55 Score=25.98 Aligned_cols=48 Identities=23% Similarity=0.267 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 038311 156 IRGMLRMFQNEWDGLMQ-SNFASEQQHHTARQELSHALYQVIALEAMLAI 204 (207)
Q Consensus 156 ip~~l~~~q~ewda~~l-e~~~~~~~~~~~~~el~~~ly~~da~~~~~~~ 204 (207)
+=++|..||+.++-... ++|-+|=.|....+.+ +..|+++...-|-.|
T Consensus 60 ~~~ll~~Lq~~~~~~~~~~~fl~~~~l~~~~~~~-q~~y~~~P~~L~~~I 108 (124)
T PF02865_consen 60 FQNLLQELQQQASRQSQEDNFLLQHNLREIAQNF-QNRYQQNPLELARII 108 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH-HHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH-HHHhccCHHHHHHHH
Confidence 45788999999998877 6788888888888888 667898887766544
No 50
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=37.12 E-value=77 Score=19.79 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=19.8
Q ss_pred CCceEEEEEeCCCCCEEEEecCCCC
Q 038311 10 TKRCGVRLLQGSKGNLATATSIGGM 34 (207)
Q Consensus 10 ~dTVG~v~~~D~~G~lAaaTSTGG~ 34 (207)
++..--|++ |.+||+=.+.+|.|.
T Consensus 12 ~~~~~~Iav-D~~GNiYv~G~T~~~ 35 (38)
T PF06739_consen 12 QDYGNGIAV-DSNGNIYVTGYTNGN 35 (38)
T ss_pred ceeEEEEEE-CCCCCEEEEEeecCC
Confidence 456777887 999999999999874
No 51
>PLN02937 Putative isoaspartyl peptidase/L-asparaginase
Probab=36.98 E-value=36 Score=32.52 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=24.6
Q ss_pred CCeEEEEEEecCCCEEEeecCCcceeE
Q 038311 103 RGNVGLIVVSASSEVTMPFNTTGMFRA 129 (207)
Q Consensus 103 ~~~gGvI~l~~~G~~~~~~nt~~M~~a 129 (207)
.++.|+|++|++|++..+.+|.++.+-
T Consensus 227 ~dTVGaValD~~G~iAAaTSTGG~~~K 253 (414)
T PLN02937 227 MDTVGVICVDSEGNIASGASSGGIAMK 253 (414)
T ss_pred CCCEEEEEEeCCCCEEEEECCCccccC
Confidence 379999999999999999999998774
No 52
>PLN02777 photosystem I P subunit (PSI-P)
Probab=36.76 E-value=30 Score=29.22 Aligned_cols=24 Identities=17% Similarity=0.527 Sum_probs=19.2
Q ss_pred CCCCcccccHHHHHHHHHHHHHHH
Q 038311 147 KPIPLMAASIRGMLRMFQNEWDGL 170 (207)
Q Consensus 147 kPrP~~~~sip~~l~~~q~ewda~ 170 (207)
.|.+..+++.+.+++++|+.||.+
T Consensus 67 ~s~~~~~~~~~ei~k~~~e~Wd~~ 90 (167)
T PLN02777 67 APAEVETTELPEIVKTVQEAWDKV 90 (167)
T ss_pred CCcccccccHHHHHHHHHHHHhhh
Confidence 344556788999999999999964
No 53
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=36.72 E-value=93 Score=25.57 Aligned_cols=42 Identities=12% Similarity=0.155 Sum_probs=37.9
Q ss_pred cccccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038311 151 LMAASIRGMLRMFQNEWDGLMQSNFASEQQHHTARQELSHAL 192 (207)
Q Consensus 151 ~~~~sip~~l~~~q~ewda~~le~~~~~~~~~~~~~el~~~l 192 (207)
....++..+|....++.|.+-.++-+++++++++++++..++
T Consensus 39 ~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (151)
T PF14584_consen 39 KDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCV 80 (151)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356789999999999999999999999999999999998765
No 54
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=35.63 E-value=1.1e+02 Score=20.92 Aligned_cols=32 Identities=9% Similarity=0.196 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038311 159 MLRMFQNEWDGLMQSNFASEQQHHTARQELSH 190 (207)
Q Consensus 159 ~l~~~q~ewda~~le~~~~~~~~~~~~~el~~ 190 (207)
.+..|+++-+.+-.|+=.|+.+++.+++++..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~ 58 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQS 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888888877654
No 55
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=34.83 E-value=1.1e+02 Score=24.03 Aligned_cols=38 Identities=11% Similarity=0.058 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhC---CCCeEEEEEEecCCCEEEeecCCcce
Q 038311 90 KEASGCVIEECV---PRGNVGLIVVSASSEVTMPFNTTGMF 127 (207)
Q Consensus 90 ~~A~~~~i~~~~---~~~~gGvI~l~~~G~~~~~~nt~~M~ 127 (207)
-+++.+++++-+ +++..|.++++++|++..++|.+.-.
T Consensus 4 ~~~a~~a~~~ay~PyS~~~vgAa~~~~~G~i~~G~n~e~~~ 44 (127)
T TIGR01354 4 FKAAQEARKNAYAPYSNFKVGAALLTKDGRIFTGVNVENAS 44 (127)
T ss_pred HHHHHHHHHhcCCCcCCCeEEEEEEeCCCCEEEEEeecccC
Confidence 455666666654 46889999999999999999998643
No 56
>PF12395 DUF3658: Protein of unknown function ; InterPro: IPR022123 This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with PF08874 from PFAM. There are two completely conserved residues (D and R) that may be functionally important.
Probab=34.23 E-value=26 Score=26.98 Aligned_cols=30 Identities=30% Similarity=0.420 Sum_probs=23.5
Q ss_pred CCCCCcccccHHHHHHHHHHHHHHHHHHhhhhHH
Q 038311 146 KKPIPLMAASIRGMLRMFQNEWDGLMQSNFASEQ 179 (207)
Q Consensus 146 VkPrP~~~~sip~~l~~~q~ewda~~le~~~~~~ 179 (207)
..++|++. ...+.|.+||..+.-||..||-
T Consensus 6 ~~~~~ls~----~~~~~l~~eW~~L~~~n~~LR~ 35 (111)
T PF12395_consen 6 KEARPLSA----EERQRLANEWEELKEENAPLRI 35 (111)
T ss_pred ccCCCCCH----HHHHHHHHHHHHHHhCCCceEE
Confidence 44556653 5678899999999999998884
No 57
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=33.52 E-value=17 Score=31.84 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=34.6
Q ss_pred ccHHHH---HHHHHHHHH-------HHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 038311 154 ASIRGM---LRMFQNEWD-------GLMQSNFASEQQHHTARQELSHALYQVIALEAM 201 (207)
Q Consensus 154 ~sip~~---l~~~q~ewd-------a~~le~~~~~~~~~~~~~el~~~ly~~da~~~~ 201 (207)
.++|.+ |..++.|-| .-+.|+|+|++++..+++++...+.+...+.+.
T Consensus 15 ~~lP~~~~~~~~~e~~~~~i~~~~~~~v~~y~~l~~~l~~~~~~~~~~i~~p~~~~~f 72 (268)
T PF13234_consen 15 RKLPELEKKLKELEEELDAIKIEDEEDVEEYYDLRQELEELRKELRKIITSPKYCLPF 72 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCS--TTCTCCHHHHHHHHHHHHHHHHHHHHHCTCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhcccccHhHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHh
Confidence 345554 334455554 447789999999999999999998777665544
No 58
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=32.97 E-value=89 Score=25.58 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038311 157 RGMLRMFQNEWDGLMQSNFASEQQHHTARQELSHAL 192 (207)
Q Consensus 157 p~~l~~~q~ewda~~le~~~~~~~~~~~~~el~~~l 192 (207)
-.--.....||+.+|-|....++.++..-++....|
T Consensus 99 ~~~~~~~~~~we~f~~e~~~~~~~vdee~~~~~~~l 134 (145)
T PF14942_consen 99 QANREQRKQEWEEFMKEQQQKKQRVDEEFREKEERL 134 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456778999999999999999998888777655
No 59
>PRK10226 isoaspartyl peptidase; Provisional
Probab=32.13 E-value=50 Score=30.35 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=24.9
Q ss_pred CCeEEEEEEecCCCEEEeecCCcceeEE
Q 038311 103 RGNVGLIVVSASSEVTMPFNTTGMFRAC 130 (207)
Q Consensus 103 ~~~gGvI~l~~~G~~~~~~nt~~M~~a~ 130 (207)
.++.|+|++|.+|++.++.+|.++++-+
T Consensus 177 ~dTVGaValD~~G~lAaaTSTGG~~~K~ 204 (313)
T PRK10226 177 MGTVGAVALDLDGNLAAATSTGGMTNKL 204 (313)
T ss_pred CCCEEEEEEeCCCCEEEEECCCCccCCC
Confidence 3789999999999999999999987743
No 60
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=31.33 E-value=86 Score=26.38 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038311 162 MFQNEWDGLMQSNFASEQQHHTARQELSH 190 (207)
Q Consensus 162 ~~q~ewda~~le~~~~~~~~~~~~~el~~ 190 (207)
.+++|+.++-.|+-+|++++..+++|+..
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~ 129 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEK 129 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34468888899999999999888888754
No 61
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=30.44 E-value=54 Score=25.65 Aligned_cols=39 Identities=23% Similarity=0.146 Sum_probs=32.5
Q ss_pred EEEEeCCCCCEEEEec-----CCCCCCCCCcccCCCCccccceee
Q 038311 15 VRLLQGSKGNLATATS-----IGGMVNKMVGKIGDTPIIGSGTYA 54 (207)
Q Consensus 15 ~v~~~D~~G~lAaaTS-----TGG~~~K~pGRVGDSpiiGaG~YA 54 (207)
.|.+ |.+-.+..||| ||-+.+.-|--+.|.|-.|||+-.
T Consensus 20 ~ie~-dcnakvvvats~dpvts~klyfscpyeisdg~g~~~gfkr 63 (122)
T PF05325_consen 20 PIEC-DCNAKVVVATSRDPVTSGKLYFSCPYEISDGPGRGCGFKR 63 (122)
T ss_pred ceec-cCCceEEEEeccCCcccceeeecCccccccCCCCCcccee
Confidence 4556 89999999998 566778889999999999999743
No 62
>PRK14126 cell division protein ZapA; Provisional
Probab=30.38 E-value=52 Score=24.36 Aligned_cols=20 Identities=0% Similarity=0.230 Sum_probs=16.9
Q ss_pred HHHHhhhhHHHHHHHHHHHH
Q 038311 170 LMQSNFASEQQHHTARQELS 189 (207)
Q Consensus 170 ~~le~~~~~~~~~~~~~el~ 189 (207)
+.-|.|+++++++.++++|-
T Consensus 63 ia~El~k~~~~~~~l~~~~~ 82 (85)
T PRK14126 63 VIHDYIKLKEEYEKLKESMT 82 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34589999999999999874
No 63
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=30.18 E-value=37 Score=25.22 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHH
Q 038311 176 ASEQQHHTARQELSH 190 (207)
Q Consensus 176 ~~~~~~~~~~~el~~ 190 (207)
+||++|+++++||.+
T Consensus 1 kL~~~L~~L~~eL~~ 15 (85)
T PF14357_consen 1 KLQELLEKLHQELEQ 15 (85)
T ss_pred CHHHHHHHHHHHHhc
Confidence 467777777777764
No 64
>PF12277 DUF3618: Protein of unknown function (DUF3618); InterPro: IPR022062 This domain family is found in bacteria, and is approximately 50 amino acids in length.
Probab=30.17 E-value=56 Score=21.67 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHH
Q 038311 177 SEQQHHTARQELSHAL 192 (207)
Q Consensus 177 ~~~~~~~~~~el~~~l 192 (207)
++.+++.+|.+|+..|
T Consensus 8 ie~dIe~tR~~La~tv 23 (49)
T PF12277_consen 8 IERDIERTRAELAETV 23 (49)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5556666666665544
No 65
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=30.05 E-value=67 Score=19.15 Aligned_cols=18 Identities=28% Similarity=0.154 Sum_probs=14.0
Q ss_pred eEEEEEeCCCCCEEEEecCC
Q 038311 13 CGVRLLQGSKGNLATATSIG 32 (207)
Q Consensus 13 VG~v~~~D~~G~lAaaTSTG 32 (207)
|-+|++ .++-+|++||.+
T Consensus 4 i~aia~--g~~~vavaTS~~ 21 (27)
T PF12341_consen 4 IEAIAA--GDSWVAVATSAG 21 (27)
T ss_pred EEEEEc--cCCEEEEEeCCC
Confidence 456777 788899999975
No 66
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=29.99 E-value=90 Score=28.27 Aligned_cols=34 Identities=12% Similarity=0.276 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038311 157 RGMLRMFQNEWDGLMQSNFASEQQHHTARQELSH 190 (207)
Q Consensus 157 p~~l~~~q~ewda~~le~~~~~~~~~~~~~el~~ 190 (207)
|.++..|.++-+.+=.|+=.||+++++++.++..
T Consensus 31 ~~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~ 64 (308)
T PF11382_consen 31 PNLIDSLEDQFDSLREENDELRAELDALQAQLNA 64 (308)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888888888777777654
No 67
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.91 E-value=34 Score=32.85 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHhhhhHH
Q 038311 159 MLRMFQNEWDGLMQSNFASEQ 179 (207)
Q Consensus 159 ~l~~~q~ewda~~le~~~~~~ 179 (207)
-|+.|.++|.|+||-.|..=.
T Consensus 329 plskln~qwealmlrmfdvft 349 (637)
T KOG4421|consen 329 PLSKLNAQWEALMLRMFDVFT 349 (637)
T ss_pred chhhhhhHHHHHHHHHHHHHH
Confidence 478899999999999997653
No 68
>cd04702 ASRGL1_like ASRGL1_like domains, a subfamily of the L-Asparaginase type 2-like enzymes. The wider family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue. ASRGL1, or asparaginase-like 1, has been cloned from mammalian testis cDNA libraries. It has been identified as a sperm antigen that may induce the production of autoantibodies following obstruction of the male reproductive tract, e.g. vasectomy.
Probab=29.62 E-value=61 Score=29.20 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=25.3
Q ss_pred CCeEEEEEEecCCCEEEeecCCcceeEE
Q 038311 103 RGNVGLIVVSASSEVTMPFNTTGMFRAC 130 (207)
Q Consensus 103 ~~~gGvI~l~~~G~~~~~~nt~~M~~a~ 130 (207)
.+..|++++|.+|++..+.+|.++.+-+
T Consensus 129 ~dTVGavalD~~G~laaatSTgG~~~K~ 156 (261)
T cd04702 129 LGTVGAVALDASGNIAAATSTGGTTNKL 156 (261)
T ss_pred CCceEEEEEeCCCCEEEEECCCCccCCC
Confidence 5899999999999999999999987754
No 69
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=29.61 E-value=1.1e+02 Score=27.58 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 038311 162 MFQNEWDGLMQSNFASEQQHHTARQELSHALYQ 194 (207)
Q Consensus 162 ~~q~ewda~~le~~~~~~~~~~~~~el~~~ly~ 194 (207)
.|+..=..+|-++.+|++.|+.+||||...=.|
T Consensus 115 ~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~ 147 (292)
T KOG4005|consen 115 SLRAINESLLAKNHELDSELELLRQELAELKQQ 147 (292)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHH
Confidence 344444678999999999999999999876544
No 70
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=29.02 E-value=1.4e+02 Score=22.25 Aligned_cols=42 Identities=17% Similarity=0.088 Sum_probs=33.9
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038311 149 IPLMAASIRGMLRMFQNEWDGLMQSNFASEQQHHTARQELSH 190 (207)
Q Consensus 149 rP~~~~sip~~l~~~q~ewda~~le~~~~~~~~~~~~~el~~ 190 (207)
.|+.+.+||.-.+.|=.|=-.+=.|...|.+++..++.+|.+
T Consensus 45 ~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l~~ 86 (88)
T PF14389_consen 45 LPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQLFQ 86 (88)
T ss_pred cCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344667888888888888888888899999999998887753
No 71
>cd04512 Ntn_Asparaginase_2_like Ntn-hydrolase superfamily, L-Asparaginase type 2-like enzymes. This family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoprotein. Taspase1 catalyzes the cleavage of the Mix Lineage Leukemia (MLL) nuclear protein and transcription factor TFIIA. L-Asparaginase type 2 hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzymes of this family undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=28.98 E-value=64 Score=28.77 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=25.1
Q ss_pred CCeEEEEEEecCCCEEEeecCCcceeEE
Q 038311 103 RGNVGLIVVSASSEVTMPFNTTGMFRAC 130 (207)
Q Consensus 103 ~~~gGvI~l~~~G~~~~~~nt~~M~~a~ 130 (207)
.+..|++++|.+|++..+.+|.++++-+
T Consensus 126 ~dTVGavalD~~G~~aaatSTGG~~~K~ 153 (248)
T cd04512 126 LDTVGAVALDGQGNLAAATSTGGMSLKL 153 (248)
T ss_pred cCcEEEEEEeCCCCEEEEECCCcccCCC
Confidence 5899999999999999999999987743
No 72
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=28.97 E-value=1e+02 Score=23.42 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 038311 158 GMLRMFQNEWDGLMQSNFASEQQHHTARQE 187 (207)
Q Consensus 158 ~~l~~~q~ewda~~le~~~~~~~~~~~~~e 187 (207)
.-+..|++|=+++.-|+-.||.+|+.-|.|
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777887788777777765
No 73
>cd04514 Taspase1_like Taspase1_like domains; Taspase1 catalyzes the cleavage of the mix lineage leukemia (MLL) nuclear protein and transcription factor TFIIA. Taspase1 is a threonine aspartase, a member of the Ntn hydrolase superfamily and the type 2 asparaginase family. A threonine residue acts as the active site nucleophile in both endopeptidease and protease activities to cleave polypeptide substrates after an aspartate residue. The Taspase1 proenzyme undergoes autoproteolysis into alpha and beta subunits. The N-terminal residue of the beta subunit is a threonine which is the active catalytic residue. The active enzyme is a heterotetramer.
Probab=28.95 E-value=62 Score=29.67 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=24.7
Q ss_pred CCeEEEEEEecCCCEEEeecCCcceeE
Q 038311 103 RGNVGLIVVSASSEVTMPFNTTGMFRA 129 (207)
Q Consensus 103 ~~~gGvI~l~~~G~~~~~~nt~~M~~a 129 (207)
.++.|++++|++|++.++.+|.++++-
T Consensus 139 ~dTVGaValD~~G~~aaatSTGG~~~K 165 (303)
T cd04514 139 LDTVGAVCVDKEGNIAAGVSSGGIALK 165 (303)
T ss_pred CCCEEEEEEeCCCCEEEEECCCcccCC
Confidence 589999999999999999999998764
No 74
>cd04701 Asparaginase_2 L-Asparaginase type 2. L-Asparaginase hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzyme undergoes an autoproteolytic cleavage into alpha and beta subunits to expose a threonine residue which becomes the N-terminal residue of the beta subunit. The threonine residue plays a central role in hydrolase activity. Some asparaginases can also hydrolyze L-glutamine and are termed glutaminase-asparaginase. This is a member of the Ntn-hydrolase superfamily.
Probab=28.76 E-value=65 Score=28.93 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=24.8
Q ss_pred CCeEEEEEEecCCCEEEeecCCcceeEE
Q 038311 103 RGNVGLIVVSASSEVTMPFNTTGMFRAC 130 (207)
Q Consensus 103 ~~~gGvI~l~~~G~~~~~~nt~~M~~a~ 130 (207)
.++.|++++|.+|++.++.+|.++++-+
T Consensus 133 ~dTVGavalD~~G~~aaatSTGG~~~K~ 160 (260)
T cd04701 133 HGTVGAVALDSHGNLAAATSTGGLTNKR 160 (260)
T ss_pred CCcEEEEEEeCCCCEEEEECCCcccCCC
Confidence 4799999999999999999999987643
No 75
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=28.56 E-value=1.7e+02 Score=20.32 Aligned_cols=46 Identities=22% Similarity=0.235 Sum_probs=28.3
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH---HHHHHHhhh
Q 038311 150 PLMAASIRGMLRMFQNEWDGLMQSNFASEQQHHTARQ---ELSHALYQV 195 (207)
Q Consensus 150 P~~~~sip~~l~~~q~ewda~~le~~~~~~~~~~~~~---el~~~ly~~ 195 (207)
|+....+=..|..+-..+-.+.++..+|.++.+.+++ ||.+-|-|+
T Consensus 11 p~~~~~~W~~L~~~l~rY~~vL~~R~~l~~e~~~L~~qN~eLr~lLkqY 59 (60)
T PF14775_consen 11 PDEKIRLWDALENFLKRYNKVLLDRAALIQEKESLEQQNEELRSLLKQY 59 (60)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444556666667777777777777666666655 455555554
No 76
>PRK00373 V-type ATP synthase subunit D; Reviewed
Probab=27.86 E-value=1.3e+02 Score=25.43 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038311 160 LRMFQNEWDGLMQSNFASEQQHHTARQELSHAL 192 (207)
Q Consensus 160 l~~~q~ewda~~le~~~~~~~~~~~~~el~~~l 192 (207)
+..|+.-=|+++.|-+++.+++.++|+++...+
T Consensus 27 ~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~ 59 (204)
T PRK00373 27 HKLLKDKRDELIMEFFDILDEAKKLREEVEEEL 59 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666679999999999999999999988875
No 77
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=27.78 E-value=1.2e+02 Score=26.42 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=38.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 038311 153 AASIRGMLRMFQNEWDGLMQSNFASEQQHHTARQELSHALYQVI 196 (207)
Q Consensus 153 ~~sip~~l~~~q~ewda~~le~~~~~~~~~~~~~el~~~ly~~d 196 (207)
..-+-.+|..+.+++..+.-|+-.|+++++.++++|.+.=-..|
T Consensus 25 ~eEVdeFLD~V~~dye~~l~e~~~l~~~i~~L~~~l~~~~~~~~ 68 (212)
T COG3599 25 EEEVDEFLDDVIDDYEQLLDENEDLEDEIDELKEELKEAADAED 68 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 35566899999999999999999999999999999988655544
No 78
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=27.18 E-value=85 Score=25.64 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHH
Q 038311 75 ARDVAAVMEFKGLSLKEASGC 95 (207)
Q Consensus 75 A~~i~~~m~~~g~~~~~A~~~ 95 (207)
-+++=..|+ |.+-+|.++-
T Consensus 34 VReLNr~Lr--G~~reEVvrl 52 (135)
T KOG4196|consen 34 VRELNRHLR--GLSREEVVRL 52 (135)
T ss_pred HHHHHHHhc--CCCHHHHHHH
Confidence 344445553 7777776643
No 79
>COG0100 RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]
Probab=26.87 E-value=63 Score=26.20 Aligned_cols=29 Identities=24% Similarity=0.131 Sum_probs=23.2
Q ss_pred CCCceEEEEEeCCCCCEEEEecCCCCCCCCC
Q 038311 9 NTKRCGVRLLQGSKGNLATATSIGGMVNKMV 39 (207)
Q Consensus 9 ~~dTVG~v~~~D~~G~lAaaTSTGG~~~K~p 39 (207)
-++|+= .+.|.+|+.-+..|+||+.+|-+
T Consensus 27 fNNTiv--titD~~Gn~i~wassG~~gfk~~ 55 (129)
T COG0100 27 FNNTIV--TITDLTGNVIIWASSGGMGFKGS 55 (129)
T ss_pred cCCcEE--EecCCCCCEEEEEecCCceEcCC
Confidence 456643 34699999999999999999854
No 80
>PF01112 Asparaginase_2: Asparaginase; InterPro: IPR000246 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Threonine peptidases are characterised by a threonine nucleophile at the N terminus of the mature enzyme. The threonine peptidases belong to clan PB or are unassigned, clan T-. The type example for this clan is the archaean proteasome beta component of Thermoplasma acidophilum. This group of sequences have a signature that places them in MEROPS peptidase family T2 (clan PB(T)). The glycosylasparaginases (3.5.1.26 from EC) are threonine peptidases. Also in this family is L-asparaginase (3.5.1.1 from EC), which catalyses the following reaction: L-asparagine + H2O = L-aspartate + NH3 Glycosylasparaginase catalyses: N4-(beta-N-acetyl-D-glucosaminyl)-L-asparagine + H(2)O = N-acetyl-beta-glucosaminylamine + L-aspartate cleaving the GlcNAc-Asn bond that links oligosaccharides to asparagine in N-linked glycoproteins. The enzyme is composed of two non-identical alpha/beta subunits joined by strong non-covalent forces and has one glycosylation site located in the alpha subunit [] and plays a major role in the degradation of glycoproteins.; GO: 0016787 hydrolase activity; PDB: 1APY_D 1APZ_C 2GEZ_E 2GL9_B 2GAC_D 2GAW_C 1AYY_A 1P4V_C 9GAF_A 1P4K_A ....
Probab=26.81 E-value=50 Score=30.34 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=21.2
Q ss_pred CCeEEEEEEecCCCEEEeecCCcceeE
Q 038311 103 RGNVGLIVVSASSEVTMPFNTTGMFRA 129 (207)
Q Consensus 103 ~~~gGvI~l~~~G~~~~~~nt~~M~~a 129 (207)
.+..|+|++|.+|++.++-+|.++.+-
T Consensus 182 ~dTVGaVa~D~~G~iaaatSTGG~~~K 208 (319)
T PF01112_consen 182 HDTVGAVALDTNGNIAAATSTGGIFFK 208 (319)
T ss_dssp C--EEEEEEETTS-EEEEEEEE-STTB
T ss_pred CCCeeEEEEECCCCEEEEecCCCccce
Confidence 688999999999999999999998774
No 81
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=26.53 E-value=80 Score=31.88 Aligned_cols=89 Identities=16% Similarity=0.201 Sum_probs=58.5
Q ss_pred CCCeEEEEEEecCCCEEEeecCCcceeE----EEecCCceEEEEecccCCCCCcccccHHHHHHHHHHHHHHHH------
Q 038311 102 PRGNVGLIVVSASSEVTMPFNTTGMFRA----CATEDGYSHIGIWTSFKKPIPLMAASIRGMLRMFQNEWDGLM------ 171 (207)
Q Consensus 102 ~~~~gGvI~l~~~G~~~~~~nt~~M~~a----~~~~DG~i~igI~~s~VkPrP~~~~sip~~l~~~q~ewda~~------ 171 (207)
|+-..|+-++|-+|++....++.+|.++ |+..-|.+-+.- .+|.| .|...+.+..-|+|+.
T Consensus 251 PGiTtgiAvldldGevl~~~S~r~~~~~eVve~I~~lG~PvvVA--tDVtp-------~P~~V~KiAasf~A~ly~P~~d 321 (652)
T COG2433 251 PGITTGIAVLDLDGEVLDLESRRGIDRSEVVEFISELGKPVVVA--TDVTP-------APETVKKIAASFNAVLYTPDRD 321 (652)
T ss_pred CCceeeEEEEecCCcEEeeeccccCCHHHHHHHHHHcCCceEEE--ccCCC-------ChHHHHHHHHHcCCcccCCccc
Confidence 4567899999999999999999998876 555556654443 44544 3555666666666553
Q ss_pred ---------HHhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 038311 172 ---------QSNFASEQQHHTARQELSHALYQVIALE 199 (207)
Q Consensus 172 ---------le~~~~~~~~~~~~~el~~~ly~~da~~ 199 (207)
|.+.+++-..+--|.-|+-|++-|++.+
T Consensus 322 LsveEK~~~~r~~~~~~~ddH~RDALAAA~kAY~~yk 358 (652)
T COG2433 322 LSVEEKQEALRTLKISVSDDHERDALAAAYKAYLAYK 358 (652)
T ss_pred CCHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHH
Confidence 2333333334455677888888777654
No 82
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=26.05 E-value=1.4e+02 Score=19.16 Aligned_cols=34 Identities=12% Similarity=-0.013 Sum_probs=26.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 038311 153 AASIRGMLRMFQNEWDGLMQSNFASEQQHHTARQ 186 (207)
Q Consensus 153 ~~sip~~l~~~q~ewda~~le~~~~~~~~~~~~~ 186 (207)
..++|.++..+|+-++-+.-|.-..|..-+.+=+
T Consensus 18 l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d~W~ 51 (53)
T PF01484_consen 18 LITVPSIYNDIQNFQSELDDEMEEFKEISDDAWN 51 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578999999999999998888777766555433
No 83
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=25.78 E-value=1.2e+02 Score=24.11 Aligned_cols=21 Identities=19% Similarity=0.591 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 038311 156 IRGMLRMFQNEWDGLMQSNFA 176 (207)
Q Consensus 156 ip~~l~~~q~ewda~~le~~~ 176 (207)
|-..|+.++.||+-++-+.|.
T Consensus 2 l~~~l~~I~~~W~~~~~~~~~ 22 (142)
T PF04048_consen 2 LDEVLNEIKDEWPFMLTDDFN 22 (142)
T ss_pred HHHHHHHHHHHHHHHhcCCCc
Confidence 346789999999998887774
No 84
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=25.11 E-value=1.4e+02 Score=24.35 Aligned_cols=34 Identities=18% Similarity=0.062 Sum_probs=29.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 038311 153 AASIRGMLRMFQNEWDGLMQSNFASEQQHHTARQ 186 (207)
Q Consensus 153 ~~sip~~l~~~q~ewda~~le~~~~~~~~~~~~~ 186 (207)
-.++|+-|..||+=|+..-.+..+|++...+..+
T Consensus 99 i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~ 132 (146)
T PF08702_consen 99 IINQPSNIRVLQNILRSNRQKIQRLEQDIDQQER 132 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999999999998887654
No 85
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=25.11 E-value=30 Score=26.52 Aligned_cols=40 Identities=13% Similarity=0.191 Sum_probs=30.8
Q ss_pred ccccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 038311 152 MAASIRGMLRMFQNEWDGLMQSNFASEQQHHTARQELSHA 191 (207)
Q Consensus 152 ~~~sip~~l~~~q~ewda~~le~~~~~~~~~~~~~el~~~ 191 (207)
.+.-+=.-|..+.++|+.+--|+=.|+++++.++.+|.+.
T Consensus 19 d~~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~ 58 (131)
T PF05103_consen 19 DPDEVDDFLDELAEELERLQRENAELKEEIEELQAQLEEL 58 (131)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3456678899999999999999999999998888877653
No 86
>PRK12411 cytidine deaminase; Provisional
Probab=24.74 E-value=1.7e+02 Score=23.28 Aligned_cols=40 Identities=13% Similarity=0.061 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhC---CCCeEEEEEEecCCCEEEeecCCccee
Q 038311 89 LKEASGCVIEECV---PRGNVGLIVVSASSEVTMPFNTTGMFR 128 (207)
Q Consensus 89 ~~~A~~~~i~~~~---~~~~gGvI~l~~~G~~~~~~nt~~M~~ 128 (207)
+-+++++++++.+ +++.+|..+++++|++....|.+.-.+
T Consensus 6 L~~~a~~~~~~ay~pyS~~~VgAa~~t~~G~i~~G~nvEn~s~ 48 (132)
T PRK12411 6 LIQEAIEARKQAYVPYSKFQVGAALLTQDGKVYRGCNVENASY 48 (132)
T ss_pred HHHHHHHHHHhcCCCccCCceEEEEEeCCCCEEEEEEeecCCC
Confidence 3455566665554 468899999999999999999998544
No 87
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=24.65 E-value=1.5e+02 Score=28.81 Aligned_cols=41 Identities=22% Similarity=0.161 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhh
Q 038311 158 GMLRMFQNEWDGLMQSNFASEQQHHTARQELSHALYQVIAL 198 (207)
Q Consensus 158 ~~l~~~q~ewda~~le~~~~~~~~~~~~~el~~~ly~~da~ 198 (207)
.-|..-++.+...+-|....+++|..+|+|+..++=..++|
T Consensus 116 ~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A 156 (522)
T PF05701_consen 116 AELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAA 156 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999888666655
No 88
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=24.53 E-value=1.2e+02 Score=26.35 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=31.8
Q ss_pred ecCCcceeEEEecCCceEEEEec-ccCCCCCcccccHHHHHHHHHHHHHHHHHHhhhhHH
Q 038311 121 FNTTGMFRACATEDGYSHIGIWT-SFKKPIPLMAASIRGMLRMFQNEWDGLMQSNFASEQ 179 (207)
Q Consensus 121 ~nt~~M~~a~~~~DG~i~igI~~-s~VkPrP~~~~sip~~l~~~q~ewda~~le~~~~~~ 179 (207)
++.+++-.++...++...+.+|+ +..-|.||. .-+=-+|.. +..||.-|+|.+.+.|
T Consensus 33 ~~~~~vev~~kk~~d~~~l~lwk~s~ei~~~p~-~vl~rvL~d-R~~WD~~m~e~~~Ie~ 90 (205)
T cd08907 33 PGPDNTELACKKVGDGHPLRLWKVSTEVEAPPS-VVLQRVLRE-RHLWDEDLLHSQVIEA 90 (205)
T ss_pred cCCCCcEEEEEeCCCCCceEEEEEEEEecCCCH-HHHHHHhhc-hhhhhHHHHhhhhhee
Confidence 33444444554333333444443 222244444 444455666 8999999999988754
No 89
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=24.45 E-value=1.3e+02 Score=27.46 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038311 157 RGMLRMFQNEWDGLMQSNFASEQQHHTARQELSH 190 (207)
Q Consensus 157 p~~l~~~q~ewda~~le~~~~~~~~~~~~~el~~ 190 (207)
-.-.++..+||..+--.--.|++|+.+.||+|+.
T Consensus 70 e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~ 103 (389)
T PF06216_consen 70 EFERQSYSNEWISLNDQVSHLQHQNSEQRQQIRE 103 (389)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677889988877777888888888888764
No 90
>PF01017 STAT_alpha: STAT protein, all-alpha domain; InterPro: IPR013800 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the all-alpha helical domain, which consists of four long helices arranged in a bundle with a left-handed twist (coiled-coil), which in turn forms a right-handed superhelix.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 3CWG_B 1BG1_A 1Y1U_B.
Probab=24.21 E-value=69 Score=26.71 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 038311 157 RGMLRMFQNEWDGLMQSNFASEQQHHTARQ 186 (207)
Q Consensus 157 p~~l~~~q~ewda~~le~~~~~~~~~~~~~ 186 (207)
.+.|..||+...+++--.|.+|||+..+..
T Consensus 120 ~~~LD~LQ~wfe~LAe~l~qlrqqlk~l~~ 149 (182)
T PF01017_consen 120 DSSLDQLQNWFESLAEILWQLRQQLKKLEE 149 (182)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999988854
No 91
>PRK05578 cytidine deaminase; Validated
Probab=24.13 E-value=1.9e+02 Score=23.04 Aligned_cols=39 Identities=15% Similarity=0.066 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhC---CCCeEEEEEEecCCCEEEeecCCccee
Q 038311 90 KEASGCVIEECV---PRGNVGLIVVSASSEVTMPFNTTGMFR 128 (207)
Q Consensus 90 ~~A~~~~i~~~~---~~~~gGvI~l~~~G~~~~~~nt~~M~~ 128 (207)
-+++++++++-+ +++..|..+++++|++....|-++..+
T Consensus 7 ~~~a~~~~~~ay~PyS~f~Vgaa~~~~~G~i~~G~nvEna~~ 48 (131)
T PRK05578 7 IEAAIEASEKAYAPYSKFPVGAALLTDDGRIYTGCNIENASY 48 (131)
T ss_pred HHHHHHHHHhcCCCcCCCceEEEEEeCCCCEEEEEEeeCccc
Confidence 445556665544 467899999999999999999997653
No 92
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=24.00 E-value=1.3e+02 Score=27.18 Aligned_cols=80 Identities=16% Similarity=0.245 Sum_probs=48.5
Q ss_pred CCeEEEEEEecCCCEEEeecCCcceeEEEecCCceEEEEecccCCCCCcccccHHHHHHHH--HHHHHHHHHHhhhhHHH
Q 038311 103 RGNVGLIVVSASSEVTMPFNTTGMFRACATEDGYSHIGIWTSFKKPIPLMAASIRGMLRMF--QNEWDGLMQSNFASEQQ 180 (207)
Q Consensus 103 ~~~gGvI~l~~~G~~~~~~nt~~M~~a~~~~DG~i~igI~~s~VkPrP~~~~sip~~l~~~--q~ewda~~le~~~~~~~ 180 (207)
...-|+|++-..-+.--..+-.+|..|+.+. .+..+..+|.| .| .+.|...+.+.+.-||.
T Consensus 127 ~~~~G~vllGDA~nmrHPLTGgGMTVAl~Dv------~lL~~lL~~~~-----------dl~d~~~v~~~l~~f~~~Rk~ 189 (276)
T PF08491_consen 127 NWKPGVVLLGDAANMRHPLTGGGMTVALNDV------VLLRDLLSPIP-----------DLSDTKAVLEALKKFHWKRKP 189 (276)
T ss_pred CCCCCEEEEehhhcCcCCccccchhhHHHHH------HHHHHHHhhhc-----------CcccHHHHHHHHHHHHHHHcc
Confidence 3556788774333344455566677765421 11112222221 11 22355567777888999
Q ss_pred HHHHHHHHHHHHhhhhhhh
Q 038311 181 HHTARQELSHALYQVIALE 199 (207)
Q Consensus 181 ~~~~~~el~~~ly~~da~~ 199 (207)
++.+.+=|+.|||.--+|.
T Consensus 190 ~~s~iNiLA~aLY~lF~a~ 208 (276)
T PF08491_consen 190 LSSVINILAQALYSLFAAD 208 (276)
T ss_pred chHHHHHHHHHHHHHHhCC
Confidence 9999999999999987764
No 93
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=23.69 E-value=80 Score=26.94 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhh
Q 038311 176 ASEQQHHTARQELSHALYQVI 196 (207)
Q Consensus 176 ~~~~~~~~~~~el~~~ly~~d 196 (207)
.+||+|+++.+||.+.|-|.+
T Consensus 156 avRqElqELE~QL~DRl~~l~ 176 (179)
T PF14723_consen 156 AVRQELQELEFQLEDRLLQLR 176 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 468888999999999887754
No 94
>PRK06848 hypothetical protein; Validated
Probab=23.64 E-value=1.8e+02 Score=23.38 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhC--CCCeEEEEEEecCCCEEEeecCCccee
Q 038311 90 KEASGCVIEECV--PRGNVGLIVVSASSEVTMPFNTTGMFR 128 (207)
Q Consensus 90 ~~A~~~~i~~~~--~~~~gGvI~l~~~G~~~~~~nt~~M~~ 128 (207)
-++++++++..+ +.+.+|..++.++|++....|-+...+
T Consensus 11 ~~~A~~a~~~ay~ps~f~VgAa~l~~~G~i~~G~NvEnas~ 51 (139)
T PRK06848 11 IKAAEKVIEKRYRNDWHHVGAALRTKTGRIYAAVHLEAYVG 51 (139)
T ss_pred HHHHHHHHHhccCCCCCcEEEEEEeCCCCEEEEEEeecCCC
Confidence 345555555544 368899999999999999999997544
No 95
>PLN02402 cytidine deaminase
Probab=23.49 E-value=3.2e+02 Score=25.14 Aligned_cols=51 Identities=14% Similarity=0.256 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhh-------CCCCeEEEEEEecCCCEEEeecCCc
Q 038311 75 ARDVAAVMEFKGLSLKEASGCVIEEC-------VPRGNVGLIVVSASSEVTMPFNTTG 125 (207)
Q Consensus 75 A~~i~~~m~~~g~~~~~A~~~~i~~~-------~~~~~gGvI~l~~~G~~~~~~nt~~ 125 (207)
+..+..++...|.+..+-+...+... ++++..|.++++++|++....|-+.
T Consensus 10 a~~~~~l~~~~g~~~~~ll~~l~~~A~~~AyaPYS~F~VGAa~l~~~G~i~~GvNVEn 67 (303)
T PLN02402 10 ASEAESMAKQSGLTVLQLLPSLVKSAQSLARPPISKYHVGAVGLGSSGRIFLGVNLEF 67 (303)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCCCCeeeEEEEeCCCCEEEEEeeec
Confidence 33444455446888777666665442 2479999999999999999988874
No 96
>PRK11546 zraP zinc resistance protein; Provisional
Probab=23.39 E-value=1.7e+02 Score=24.01 Aligned_cols=32 Identities=25% Similarity=0.230 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 038311 162 MFQNEWDGLMQSNFASEQQHHTARQELSHALYQ 194 (207)
Q Consensus 162 ~~q~ewda~~le~~~~~~~~~~~~~el~~~ly~ 194 (207)
.+|+=-|.+--++..||++|-.-|.||- +|++
T Consensus 51 ~~q~I~~~f~~~t~~LRqqL~aKr~ELn-ALl~ 82 (143)
T PRK11546 51 AWQKIHNDFYAQTSALRQQLVSKRYEYN-ALLT 82 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHc
Confidence 3333334445567778888888777774 4444
No 97
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=23.30 E-value=1.5e+02 Score=21.58 Aligned_cols=27 Identities=11% Similarity=0.158 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038311 164 QNEWDGLMQSNFASEQQHHTARQELSH 190 (207)
Q Consensus 164 q~ewda~~le~~~~~~~~~~~~~el~~ 190 (207)
.+|+|+.--...++|+.|+.+..+|+.
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~ 75 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAA 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888888887763
No 98
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=23.23 E-value=3e+02 Score=21.90 Aligned_cols=37 Identities=27% Similarity=0.122 Sum_probs=21.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHH--------Hhhhhhhhhhhh
Q 038311 166 EWDGLMQSNFASEQQHHTARQELSHA--------LYQVIALEAMLA 203 (207)
Q Consensus 166 ewda~~le~~~~~~~~~~~~~el~~~--------ly~~da~~~~~~ 203 (207)
+||+. +|++.++..+.++|.+|-.+ ..|.+++..+|+
T Consensus 85 ~~~~~-~e~~~~a~~~~~l~~~Le~ae~~~~~~~~~~~~~~e~~~~ 129 (139)
T PF13935_consen 85 ELEQE-CENEDIALDVQKLRVELEAAEKRIAAELAEQAEAYEGEIA 129 (139)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45554 55666666666666666533 244456555553
No 99
>PHA02677 hypothetical protein; Provisional
Probab=22.69 E-value=78 Score=24.91 Aligned_cols=18 Identities=11% Similarity=0.333 Sum_probs=16.0
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 038311 155 SIRGMLRMFQNEWDGLMQ 172 (207)
Q Consensus 155 sip~~l~~~q~ewda~~l 172 (207)
=||++..+|+.|+||.+.
T Consensus 18 iVP~I~EKlR~E~~Af~k 35 (108)
T PHA02677 18 LVPGIFEKLRQEHAAFDR 35 (108)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 489999999999999874
No 100
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=22.37 E-value=2e+02 Score=19.05 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 038311 161 RMFQNEWDGLMQSNFASEQQHHTARQE 187 (207)
Q Consensus 161 ~~~q~ewda~~le~~~~~~~~~~~~~e 187 (207)
..+..+-+-+--|+-.|++++..+++|
T Consensus 28 ~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 28 EELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344555566666677777777776665
No 101
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=22.24 E-value=98 Score=25.39 Aligned_cols=60 Identities=17% Similarity=0.254 Sum_probs=41.5
Q ss_pred CCCeEEEEEEecCCCEEEeecCCcceeE----EEecCCceEEEEecccCCCCCcccccHHHHHHHHHHHHHHH
Q 038311 102 PRGNVGLIVVSASSEVTMPFNTTGMFRA----CATEDGYSHIGIWTSFKKPIPLMAASIRGMLRMFQNEWDGL 170 (207)
Q Consensus 102 ~~~~gGvI~l~~~G~~~~~~nt~~M~~a----~~~~DG~i~igI~~s~VkPrP~~~~sip~~l~~~q~ewda~ 170 (207)
|+-..|+-++|=+|++..-+++..|.++ |+.+-|.+-+.- .+|.|-|- ..+.|..-++|.
T Consensus 39 PG~ttgiAildL~G~~l~l~S~R~~~~~evi~~I~~~G~PviVA--tDV~p~P~-------~V~Kia~~f~A~ 102 (138)
T PF04312_consen 39 PGTTTGIAILDLDGELLDLKSSRNMSRSEVIEWISEYGKPVIVA--TDVSPPPE-------TVKKIARSFNAV 102 (138)
T ss_pred CCceeEEEEEecCCcEEEEEeecCCCHHHHHHHHHHcCCEEEEE--ecCCCCcH-------HHHHHHHHhCCc
Confidence 5677899999999999999999999886 444556655444 56665544 444444444443
No 102
>PF12938 M_domain: M domain of GW182
Probab=22.16 E-value=1.1e+02 Score=27.29 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=25.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHH--HHHhh
Q 038311 166 EWDGLMQSNFASEQQHHTARQELS--HALYQ 194 (207)
Q Consensus 166 ewda~~le~~~~~~~~~~~~~el~--~~ly~ 194 (207)
|..-+..|.-++|+|+.++|.+++ ++||=
T Consensus 179 ~~~q~~~~I~~~kqqI~~lqnQIa~qQal~v 209 (235)
T PF12938_consen 179 EEQQLAVQINKTKQQIQQLQNQIAAQQALYV 209 (235)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 456678889999999999999999 88884
No 103
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=21.93 E-value=91 Score=25.87 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=21.5
Q ss_pred CCceEEEEEeCCCCCEEEEecCCCCCCCCC
Q 038311 10 TKRCGVRLLQGSKGNLATATSIGGMVNKMV 39 (207)
Q Consensus 10 ~dTVG~v~~~D~~G~lAaaTSTGG~~~K~p 39 (207)
++|+ |.+-|..|+.-+..|+||+.+|-.
T Consensus 38 NNTi--ItiTD~~G~~~~w~SsG~~gfKg~ 65 (149)
T PTZ00129 38 NDTF--IHVTDLSGRETLVRVTGGMKVKAD 65 (149)
T ss_pred CCeE--EEEEcccCCEEEEEecCcceeccc
Confidence 4453 445699999999999999888743
No 104
>smart00150 SPEC Spectrin repeats.
Probab=21.75 E-value=1.1e+02 Score=21.09 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=19.5
Q ss_pred CcccccHHHHHHHHHHHHHHHHHH
Q 038311 150 PLMAASIRGMLRMFQNEWDGLMQS 173 (207)
Q Consensus 150 P~~~~sip~~l~~~q~ewda~~le 173 (207)
|+.+..|-..+..|++.|+.+...
T Consensus 69 ~~~~~~i~~~~~~l~~~w~~l~~~ 92 (101)
T smart00150 69 HPDAEEIEERLEELNERWEELKEL 92 (101)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 556778999999999999976543
No 105
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Probab=21.56 E-value=3.8e+02 Score=23.75 Aligned_cols=41 Identities=10% Similarity=0.014 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhCCCCeEEEEEEecCCC
Q 038311 76 RDVAAVMEFKGLSLKEASGCVIEECVPRGNVGLIVVSASSE 116 (207)
Q Consensus 76 ~~i~~~m~~~g~~~~~A~~~~i~~~~~~~~gGvI~l~~~G~ 116 (207)
.-+++.++..|....+++.++|+...-.+..|.+-.++.++
T Consensus 286 ~~l~~Al~~ag~~~~~~v~~aL~~~~~~~~~g~~~f~~~~~ 326 (360)
T cd06357 286 HLFARALQRAGSDDPEDVLAALLGFSFDAPQGPVRIDPDNN 326 (360)
T ss_pred HHHHHHHHHcCCCCHHHHHHHhccCcccCCCcceEEeCCCC
Confidence 33444555456555667777776532234456666666553
No 106
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=21.40 E-value=1.6e+02 Score=16.31 Aligned_cols=21 Identities=24% Similarity=0.058 Sum_probs=16.0
Q ss_pred CCCceEEEEEeCCCCCEEEEec
Q 038311 9 NTKRCGVRLLQGSKGNLATATS 30 (207)
Q Consensus 9 ~~dTVG~v~~~D~~G~lAaaTS 30 (207)
.++.|-.++. |++|++=.+|.
T Consensus 3 ~~n~I~~i~~-D~~G~lWigT~ 23 (24)
T PF07494_consen 3 PNNNIYSIYE-DSDGNLWIGTY 23 (24)
T ss_dssp SSSCEEEEEE--TTSCEEEEET
T ss_pred CCCeEEEEEE-cCCcCEEEEeC
Confidence 4677888986 99999988774
No 107
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=20.87 E-value=2.9e+02 Score=19.81 Aligned_cols=32 Identities=34% Similarity=0.269 Sum_probs=22.9
Q ss_pred HHHHHHHHHH----HhhhhHHHHHHHHHHHHHHHhh
Q 038311 163 FQNEWDGLMQ----SNFASEQQHHTARQELSHALYQ 194 (207)
Q Consensus 163 ~q~ewda~~l----e~~~~~~~~~~~~~el~~~ly~ 194 (207)
.+.++..++. +.-.+|+++...|+||...|..
T Consensus 46 Q~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~ 81 (125)
T PF13801_consen 46 QQAKLRALMDEFRQEMRALRQELRAARQELRALLAA 81 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3455555555 5567888899999999888765
No 108
>TIGR00309 V_ATPase_subD H(+)-transporting ATP synthase, vacuolar type, subunit D. Although this ATPase can run backwards, using a proton gradient to synthesize ATP, the primary biological role is to acidify some compartment, such as yeast vacuole (a lysosomal homolog) or the interior of a prokaryote.
Probab=20.36 E-value=2.2e+02 Score=24.16 Aligned_cols=33 Identities=9% Similarity=0.175 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038311 160 LRMFQNEWDGLMQSNFASEQQHHTARQELSHAL 192 (207)
Q Consensus 160 l~~~q~ewda~~le~~~~~~~~~~~~~el~~~l 192 (207)
+..|+.-=|+++.|-+++.+++.++|+++...+
T Consensus 25 ~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~ 57 (209)
T TIGR00309 25 YSLLKLKRDALIMEFRQILERAKDIKNKMEQKL 57 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677779999999999999999999998655
No 109
>PF05305 DUF732: Protein of unknown function (DUF732); InterPro: IPR007969 This entry represents several uncharacterised Mycobacterium tuberculosis proteins of unknown function.
Probab=20.35 E-value=1.8e+02 Score=21.22 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=22.8
Q ss_pred HhHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 038311 72 HTVARDVAAVMEFKGLSLKEASGCVIEE 99 (207)
Q Consensus 72 ~~lA~~i~~~m~~~g~~~~~A~~~~i~~ 99 (207)
..+++.+|..++ .|.++++.+..+.+.
T Consensus 46 i~~g~~vC~~l~-~G~~~~~v~~~v~~~ 72 (100)
T PF05305_consen 46 IALGHAVCDQLD-SGTSPEQVVDAVQAN 72 (100)
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHHHh
Confidence 458999999998 899999998887654
No 110
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=20.15 E-value=1.6e+02 Score=20.00 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHH
Q 038311 161 RMFQNEWDGLMQSNFASEQQH 181 (207)
Q Consensus 161 ~~~q~ewda~~le~~~~~~~~ 181 (207)
+.|+.++..+-.|.|+||-|.
T Consensus 9 ~eL~~~l~~l~~elf~Lr~q~ 29 (57)
T cd00427 9 EELQEKLDELKKELFNLRFQK 29 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999554
No 111
>cd04703 Asparaginase_2_like A subfamily of the L-Asparaginase type 2-like enzymes. The wider family, a member of the Ntn-hydrolase superfamily, includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=20.03 E-value=1.2e+02 Score=27.15 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=23.7
Q ss_pred CCCeEEEEEEecCCCEEEeecCCcceeE
Q 038311 102 PRGNVGLIVVSASSEVTMPFNTTGMFRA 129 (207)
Q Consensus 102 ~~~~gGvI~l~~~G~~~~~~nt~~M~~a 129 (207)
..++.|+|++|. |++..+.+|.++.+-
T Consensus 126 ~~dTVG~valD~-G~laaatSTGG~~~K 152 (246)
T cd04703 126 GHDTVGAVARDG-GRLAAATSTGGRWPA 152 (246)
T ss_pred CCCCEEEEEEEC-CCEEEEECCCcccCC
Confidence 358999999999 999999999987663
Done!