BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038314
         (565 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q55DE7|ATX2_DICDI Ataxin-2 homolog OS=Dictyostelium discoideum GN=atxn2 PE=3 SV=1
          Length = 1103

 Score = 50.8 bits (120), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 10/105 (9%)

Query: 18  SSLSEALLFATMCIIGLPVDVYIKDGSVYSGIFY-----TASVEKDYGIVLKKAKMSKKG 72
           +++ E  +F +M ++G  V V +K+G VY GI +     T S    +G+ L   KM++K 
Sbjct: 79  TAMKERTVFMSMSLVGQNVSVTLKNGDVYEGILHTTSTSTGSSGGGWGVAL---KMARKK 135

Query: 73  KSNANVANGTVIETLVILSADLVQVVAKGVQLPADGIAGNFAGDD 117
            +N  V     +  ++I + D +Q+ A GV L  D    +F   D
Sbjct: 136 DTNNRVITTLPLPLVIIEAKDFLQITATGVVL--DHYRDSFMNRD 178


>sp|Q29A33|ATX2_DROPS Ataxin-2 homolog OS=Drosophila pseudoobscura pseudoobscura GN=Atx2
           PE=3 SV=2
          Length = 1121

 Score = 37.7 bits (86), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 8/98 (8%)

Query: 24  LLFATMCIIGLPVDVYIKDGSVYSGIFYTASVEKDYGIVLKKAKMSKKGKSNANVANGTV 83
            + +   ++G  V+V ++ G++Y G+F T S   D  + L     SK      N+     
Sbjct: 72  FMHSATALVGSVVEVVLRSGNIYEGVFRTFSGNFDIALELPACIKSK------NLPEEGK 125

Query: 84  IETLVILSAD-LVQVVAKGVQLPADGIAGNFAGDDVVA 120
           +   +I  AD +V++VAK         AG F  D+ ++
Sbjct: 126 VPKHIIFPADTVVKIVAKDFDS-QYATAGAFKTDEAIS 162


>sp|Q8K1S5|KLF11_MOUSE Krueppel-like factor 11 OS=Mus musculus GN=Klf11 PE=2 SV=3
          Length = 502

 Score = 33.5 bits (75), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 64/150 (42%), Gaps = 13/150 (8%)

Query: 417 LTAANGGSAAQFSQPIVGHAGRS-QPVRYAGQYPVQAGPTYVHPSSQA-VMFGRVGGQLV 474
           L  A+G S       ++ H G S  P R+        GPT    +S +     R+   L 
Sbjct: 149 LEPASGSSCRAVMTSVIRHTGESPAPTRFP------TGPTQEQRASDSGEGQERLLDHLE 202

Query: 475 YMQPVSNDLGVAAMSPVSARPALTPHQVQFPKHQGNAAGQ--ALQLCIP-SPMVAGGLQP 531
            +Q      G+   + VS +P L      FP  +G   G   A+Q C+P +P      + 
Sbjct: 203 ALQDTRLANGLLVTNLVSCQPCLHKSGGSFPTDKGQQTGWPAAVQTCLPKNPESDLSRKI 262

Query: 532 FPVPSHIPVLQPPIPANRPIPVPGSNGLYS 561
            P+ S +PV  PP+     IPV G NGL+S
Sbjct: 263 TPLIS-VPVSSPPVLCQM-IPVAGQNGLFS 290


>sp|Q07279|NFE2_MOUSE Transcription factor NF-E2 45 kDa subunit OS=Mus musculus GN=Nfe2
           PE=1 SV=1
          Length = 373

 Score = 33.5 bits (75), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 482 DLGVAAMSPVSARPALTPHQVQFPKHQGNAAGQALQLCIPSPMVAGGLQPFPVPSHIPVL 541
           D G +   P    PA TPH  + P   GN A     + +  P+   GL   P+P H+ +L
Sbjct: 73  DAGFSLPPPSYELPASTPHVPELPYSYGNVA-----IPVSKPLTLSGLLNEPLPDHLALL 127

Query: 542 QPPIPANRPIP 552
              +P  +P P
Sbjct: 128 DIGLPVGQPKP 138


>sp|Q56A10|ZN608_MOUSE Zinc finger protein 608 OS=Mus musculus GN=Znf608 PE=2 SV=1
          Length = 1511

 Score = 33.1 bits (74), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 252 CQGPVMPAEEHPNM--AFKHSNGVSHDPAHELDKPENQCRERPTSAD 296
           C  PV+    HPN    +KH NG+ +  AH    PEN+    P S D
Sbjct: 546 CSSPVLIDCPHPNCNKKYKHINGLRYHQAHAHLDPENKLEFEPDSED 592


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.128    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 211,439,490
Number of Sequences: 539616
Number of extensions: 9313222
Number of successful extensions: 26257
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 351
Number of HSP's that attempted gapping in prelim test: 25241
Number of HSP's gapped (non-prelim): 1143
length of query: 565
length of database: 191,569,459
effective HSP length: 123
effective length of query: 442
effective length of database: 125,196,691
effective search space: 55336937422
effective search space used: 55336937422
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)