BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038315
(246 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 99/265 (37%), Gaps = 71/265 (26%)
Query: 18 ADGIVVNTFEELEAEYVKEYRRAKGDKVWCIGPISTCNKLNTDKVERCRGENGSTVNDYE 77
A + +N+FEEL+ + + +K IGP N + V V +
Sbjct: 214 ATAVFINSFEELDDSLTNDLK-SKLKTYLNIGPF---NLITPPPV----------VPNTT 259
Query: 78 QYLKWLDSWEPGSVICSCLGSICDLATWQXXXXXXXXXASSQPFIWVIRGGERSQ----- 132
L+WL +P SV+ G++ + AS PFIW +R R
Sbjct: 260 GCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVHLPEGF 319
Query: 133 --------------------------------------EGVSAGVPLVTCPLYAEQFYNE 154
E V+ GVPL+ P + +Q N
Sbjct: 320 LEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNG 379
Query: 155 KLVMQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRNRARQL 214
++V VL IGV + G+ KSGL+ ++++ + K G+K R R L
Sbjct: 380 RMVEDVLEIGVR------IEGGVFTKSGLM-------SCFDQILSQEK-GKKLRENLRAL 425
Query: 215 GEITNRAIGVGGSSHRNIEMLIEFV 239
E +RA+G GSS N L++ V
Sbjct: 426 RETADRAVGPKGSSTENFITLVDLV 450
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 107/269 (39%), Gaps = 64/269 (23%)
Query: 21 IVVNTFEELEAEYVKEYRRAKGDKVWCIGPISTCNKLNTDKVERCRGENGSTVNDYEQYL 80
I++NTF ELE++ + + ++ IGP+ + K T ++ + + + + + L
Sbjct: 229 ILLNTFNELESDVINALS-STIPSIYPIGPLPSLLK-QTPQIHQLDSLDSNLWKEDTECL 286
Query: 81 KWLDSWEPGSVICSCLGSICDLATWQXXXXXXXXXASSQPFIWVIR-------------- 126
WL+S EPGSV+ GS + Q + F+W+IR
Sbjct: 287 DWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSE 346
Query: 127 ---------------------------------GGERSQEGVSAGVPLVTCPLYAEQFYN 153
G + E + AGVP++ P +A+Q +
Sbjct: 347 FTNEIADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTD 406
Query: 154 EKLVMQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRNRARQ 213
+ + IG+ + +KRE++ + I +++ G +G+K + +A +
Sbjct: 407 CRFICNEWEIGMEIDTN--------------VKREELAKLINEVI-AGDKGKKMKQKAME 451
Query: 214 LGEITNRAIGVGGSSHRNIEMLIEFVIQK 242
L + GG S+ N+ +I+ V+ K
Sbjct: 452 LKKKAEENTRPGGCSYMNLNKVIKDVLLK 480
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 106/272 (38%), Gaps = 65/272 (23%)
Query: 16 QSADGIVVNTFEELEAEYVKEYRRAKGDK--VWCIGPISTCNKLNTDKVERCRGENGSTV 73
+ A+GI+VNTF ELE +K + DK V+ +GP+ K + E
Sbjct: 205 KEAEGILVNTFFELEPNAIKALQEPGLDKPPVYPVGPLVNIGKQEAKQTEES-------- 256
Query: 74 NDYEQYLKWLDSWEPGSVICSCLGSICDLATWQXXXXXXXXXASSQPFIWVIRGG----- 128
+ LKWLD+ GSV+ GS L Q S Q F+WVIR
Sbjct: 257 ----ECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIAN 312
Query: 129 -----ERSQEGVSAGVPL----------VTCPLYAEQF----------------YNEKLV 157
SQ +P P +A Q +N L
Sbjct: 313 SSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLE 372
Query: 158 MQVLGIGV------------SVGIEAAVTWGLEDKSGL--VIKREKVKEAIEKLMDRGKQ 203
V GI + +V + + L ++G +++RE+V ++ LM+ G++
Sbjct: 373 SVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLME-GEE 431
Query: 204 GEKRRNRARQLGEITNRAIGVGGSSHRNIEML 235
G+ RN+ ++L E R + G+S + + ++
Sbjct: 432 GKGVRNKMKELKEAACRVLKDDGTSTKALSLV 463
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 105/265 (39%), Gaps = 66/265 (24%)
Query: 20 GIVVNTFEELEAEYVKEY--RRAKGDKVWCIGPISTCNKLNTDKVERCRGENGSTVNDYE 77
GI+VNTF +LE + K ++ +GP+ K+++ + ++
Sbjct: 214 GIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQ---------HD 264
Query: 78 QYLKWLDSWEPGSVICSCLGSI-CDLATWQXXXXXXXXXASSQPFIW------------- 123
LKWLD SV+ C GS+ Q S F+W
Sbjct: 265 LILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGF 324
Query: 124 --------------------VIR----GGERSQ-------EGVSAGVPLVTCPLYAEQFY 152
V+ GG S E + GVP++T P+YAEQ
Sbjct: 325 LEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQL 384
Query: 153 NEKLVMQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRNRAR 212
N +++ G+G+ + ++ K V+ E++++ ++ LMD+ K + +
Sbjct: 385 NAFRLVKEWGVGLGLRVDYR-------KGSDVVAAEEIEKGLKDLMDKDSIVHK---KVQ 434
Query: 213 QLGEITNRAIGVGGSSHRNIEMLIE 237
++ E++ A+ GGSS ++ LI+
Sbjct: 435 EMKEMSRNAVVDGGSSLISVGKLID 459
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 105/265 (39%), Gaps = 66/265 (24%)
Query: 20 GIVVNTFEELEAEYVKEY--RRAKGDKVWCIGPISTCNKLNTDKVERCRGENGSTVNDYE 77
GI+VNTF +LE + K ++ +GP+ K+++ + ++
Sbjct: 214 GIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQ---------HD 264
Query: 78 QYLKWLDSWEPGSVICSCLGSI-CDLATWQXXXXXXXXXASSQPFIW------------- 123
LKWLD SV+ C GS+ Q S F+W
Sbjct: 265 LILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGF 324
Query: 124 --------------------VIR----GGERSQ-------EGVSAGVPLVTCPLYAEQFY 152
V+ GG S E + GVP++T P+YAEQ
Sbjct: 325 LEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQL 384
Query: 153 NEKLVMQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRNRAR 212
N +++ G+G+ + ++ K V+ E++++ ++ LMD+ K + +
Sbjct: 385 NAFRLVKEWGVGLGLRVDYR-------KGSDVVAAEEIEKGLKDLMDKDSIVHK---KVQ 434
Query: 213 QLGEITNRAIGVGGSSHRNIEMLIE 237
++ E++ A+ GGSS ++ LI+
Sbjct: 435 EMKEMSRNAVVDGGSSLISVGKLID 459
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 95/265 (35%), Gaps = 71/265 (26%)
Query: 18 ADGIVVNTFEELEAEYVKEYRRAKGDKVWCIGPISTCNKLNTDKVERCRGENGSTVNDYE 77
A+ + +N+F + ++ +K + +GP N +R V+D
Sbjct: 216 ANAVAINSFATIHP-LIENELNSKFKLLLNVGP------FNLTTPQR-------KVSDEH 261
Query: 78 QYLKWLDSWEPGSVICSCLGSICDLATWQXXXXXXXXXASSQPFIWVIRGGERSQ----- 132
L+WLD E SV+ GS+ + PFIW RG + +
Sbjct: 262 GCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGDPKEKLPKGF 321
Query: 133 --------------------------------------EGVSAGVPLVTCPLYAEQFYNE 154
E + GVP+++ P + +Q N
Sbjct: 322 LERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNT 381
Query: 155 KLVMQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRNRARQL 214
L VL IGV V +G V+ +E +K+A+E M K G R+ + +L
Sbjct: 382 ILTESVLEIGVGV------------DNG-VLTKESIKKALELTMSSEKGGIMRQ-KIVKL 427
Query: 215 GEITNRAIGVGGSSHRNIEMLIEFV 239
E +A+ G+S + LI+ V
Sbjct: 428 KESAFKAVEQNGTSAMDFTTLIQIV 452
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 131 SQEGVSAGVPLVTCPLYAEQFYNEKLVMQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKV 190
SQEG++ P++ P +QF N + +Q LG+ + E A L + + ++ +V
Sbjct: 312 SQEGLATATPMIAVPQAVDQFGNADM-LQGLGVARKLATEEATADLLRETALALVDDPEV 370
Query: 191 KEAIEKLM-DRGKQGEKRR 208
+ ++ + ++G RR
Sbjct: 371 ARRLRRIQAEMAQEGGTRR 389
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 158 MQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEK 196
M+VL IG G AAVT + + GLV+ E++ E EK
Sbjct: 79 MKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEK 117
>pdb|3NYZ|A Chain A, Crystal Structure Of Kemp Elimination Catalyst 1a53-2
pdb|3NYZ|B Chain B, Crystal Structure Of Kemp Elimination Catalyst 1a53-2
pdb|3NZ1|A Chain A, Crystal Structure Of Kemp Elimination Catalyst 1a53-2
Complexed With Transition State Analog 5-Nitro
Benzotriazole
Length = 261
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 203 QGEKRRNRARQLGEITNRAIGVGGSSHRNIEMLIEFVIQKTRGQ 246
QG RN +L ++ A G+G S RN E + EF++ G+
Sbjct: 211 QGISERNEIEELRKLGVNAFGIGSSLMRNPEKIKEFILGSIEGR 254
>pdb|3SQG|A Chain A, Crystal Structure Of A Methyl-Coenzyme M Reductase
Purified From Black Sea Mats
pdb|3SQG|D Chain D, Crystal Structure Of A Methyl-Coenzyme M Reductase
Purified From Black Sea Mats
pdb|3SQG|G Chain G, Crystal Structure Of A Methyl-Coenzyme M Reductase
Purified From Black Sea Mats
Length = 579
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 55 NKLNTDKVERC-RGENGSTVNDYEQYLKWLDSWEPGSVICSCLGSIC 100
+KLN D +E R EN + YE Y +S GSV C + C
Sbjct: 382 DKLNMDILEEIIRAENDYALTQYEAYPTVAESHFGGSVRACCAAAGC 428
>pdb|2WE2|A Chain A, Ebv Dutpase Double Mutant Gly78asp-Asp131ser With Dump
Length = 286
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 134 GVSAGVPLVTCPLYAEQFYNEKLVMQVLGIG 164
+ +G+P+ CP F N+KL++Q +G
Sbjct: 2 AMGSGIPMEACPHIRYAFQNDKLLLQQASVG 32
>pdb|2WE1|A Chain A, Ebv Dutpase Mutant Asp131asn With Bound Dump
Length = 286
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 135 VSAGVPLVTCPLYAEQFYNEKLVMQVLGIG 164
+ +G+P+ CP F N+KL++Q +G
Sbjct: 3 MGSGIPMEACPHIRYAFQNDKLLLQQASVG 32
>pdb|2WE3|A Chain A, Ebv Dutpase Inactive Mutant Deleted Of Motif V
Length = 264
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 134 GVSAGVPLVTCPLYAEQFYNEKLVMQVLGIG 164
+ +G+P+ CP F N+KL++Q +G
Sbjct: 2 AMGSGIPMEACPHIRYAFQNDKLLLQQASVG 32
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,302,548
Number of Sequences: 62578
Number of extensions: 293653
Number of successful extensions: 854
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 830
Number of HSP's gapped (non-prelim): 23
length of query: 246
length of database: 14,973,337
effective HSP length: 96
effective length of query: 150
effective length of database: 8,965,849
effective search space: 1344877350
effective search space used: 1344877350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)