Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>038317
INVDATVDVEKQVAGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTG
LVSALLESDCLEVVQIVNNRCSSMVEISWMISEILEMNNSFQNFRAQHTATINNSAAHAL
RFKICKR

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  038317
        (127 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:1006230762 - symbol:AT1G04625 species:3702 "Ar...   110  5.2e-06   1
TAIR|locus:2201941 - symbol:AT1G10000 species:3702 "Arabi...    96  0.00026   1


>TAIR|locus:1006230762 [details] [associations]
            symbol:AT1G04625 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR012337 EMBL:CP002684 GO:GO:0003676
            SUPFAM:SSF53098 UniGene:At.20547 IPI:IPI00938819
            RefSeq:NP_001154303.1 UniGene:At.74715 ProteinModelPortal:F4I5Q9
            EnsemblPlants:AT1G04625.1 GeneID:3766658 KEGG:ath:AT1G04625
            Uniprot:F4I5Q9
        Length = 257

 Score = 110 (43.8 bits), Expect = 5.2e-06, P = 5.2e-06
 Identities = 33/104 (31%), Positives = 47/104 (45%)

Query:    17 GVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTGLVSALLESDCLEVVQI 76
             G ++RDD+   + AA     I TN   +E  A+   MQ     G      E D  EV +I
Sbjct:   107 GWLLRDDRGTFLGAAHAIGSITTNPMESELQALVMAMQHCWSRGYRKIYFEGDNKEVSEI 166

Query:    77 VNNRCSSMVEISWMISEILEMNNSFQNFRAQHTATINNSAAHAL 120
             VN R S+    +W I +I    + F+  +   T   +N AA AL
Sbjct:   167 VNGRSSNFAVFNW-IRDISAWRSKFEECKFTWTRRFSNMAADAL 209


>TAIR|locus:2201941 [details] [associations]
            symbol:AT1G10000 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004523
            "ribonuclease H activity" evidence=IEA] [GO:0009062 "fatty acid
            catabolic process" evidence=RCA] InterPro:IPR002156
            InterPro:IPR012337 PROSITE:PS50879 EMBL:CP002684 GO:GO:0003676
            SUPFAM:SSF53098 GO:GO:0004523 InterPro:IPR026960 Pfam:PF13966
            IPI:IPI00540565 RefSeq:NP_172471.1 UniGene:At.42198
            ProteinModelPortal:F4I2P2 SMR:F4I2P2 PRIDE:F4I2P2 DNASU:837535
            EnsemblPlants:AT1G10000.1 GeneID:837535 KEGG:ath:AT1G10000
            OMA:HISSTWD ArrayExpress:F4I2P2 Uniprot:F4I2P2
        Length = 303

 Score = 96 (38.9 bits), Expect = 0.00026, P = 0.00026
 Identities = 37/126 (29%), Positives = 56/126 (44%)

Query:     3 VDATVDVEKQVAGLGVVIR--DDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTG 60
             VDA    +  +AG G V +     +  I       R F +   AEA AIK  M  AL+  
Sbjct:   164 VDAAWQQQSSLAGSGWVFQATSHSEKEITTFSAGCRRFPSPLAAEAWAIKSAMLHALQLE 223

Query:    61 LVSALLESDCLEVVQIVNNRCSSMVEISWMISEILEMNNSFQNFRAQHTATINNSAAHAL 120
                 L+ SD   +V  +N+  S + EI  ++ EI  + N F++   Q    + NS A A 
Sbjct:   224 RSDLLVLSDSKSIVDALNSNVS-LNEIFGLLVEIRSIRNRFRSISFQFIPRLVNSIADAA 282

Query:   121 -RFKIC 125
              +  +C
Sbjct:   283 AKLSLC 288


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.131   0.373    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      127       127   0.00091  102 3  11 22  0.46    30
                                                     29  0.40    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  563 (60 KB)
  Total size of DFA:  124 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.35u 0.08s 12.43t   Elapsed:  00:00:02
  Total cpu time:  12.35u 0.08s 12.43t   Elapsed:  00:00:02
  Start:  Sat May 11 01:13:36 2013   End:  Sat May 11 01:13:38 2013

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