BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038317
(127 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|C4ZBV1|MURC_EUBR3 UDP-N-acetylmuramate--L-alanine ligase OS=Eubacterium rectale
(strain ATCC 33656 / VPI 0990) GN=murC PE=3 SV=1
Length = 459
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 89 WMISEILEMNNSFQNFRAQHTATINNSAAHALRFK 123
+ ISE E NSF NFR +++ +N A H FK
Sbjct: 162 YFISEACEYTNSFLNFRPRYSIILNIEAEHLDFFK 196
>sp|Q4R7M4|DTWD2_MACFA DTW domain-containing protein 2 OS=Macaca fascicularis GN=DTWD2
PE=2 SV=1
Length = 298
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 17/84 (20%)
Query: 49 IKWGMQVALKTGLVSALLESDCLEVVQIVNNRCSSMVEISWMISEILEMNNSFQ------ 102
+ QV LKT + S + + NRC S +E + + ILE NN Q
Sbjct: 194 FRHPKQVQLKTSISSQYV------IRMQPTNRCLSTLECAAVALSILEKNNYIQETLLRP 247
Query: 103 -----NFRAQHTATINNSAAHALR 121
+F+ QH A I S H L+
Sbjct: 248 LQALCSFQLQHGAQIRLSKEHLLK 271
>sp|Q8NBA8|DTWD2_HUMAN DTW domain-containing protein 2 OS=Homo sapiens GN=DTWD2 PE=2 SV=1
Length = 298
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 17/84 (20%)
Query: 49 IKWGMQVALKTGLVSALLESDCLEVVQIVNNRCSSMVEISWMISEILEMNNSFQ------ 102
+ QV LKT + S + + NRC S +E + + ILE NN Q
Sbjct: 194 FRHPKQVQLKTSISSQYV------IRMQPTNRCLSTLECAAVALSILEKNNYIQETLLRP 247
Query: 103 -----NFRAQHTATINNSAAHALR 121
+F+ QH A I S H L+
Sbjct: 248 LQALCSFQLQHGAQIRLSKEHLLK 271
>sp|Q9D0U1|DTWD2_MOUSE DTW domain-containing protein 2 OS=Mus musculus GN=Dtwd2 PE=2 SV=1
Length = 298
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 17/84 (20%)
Query: 49 IKWGMQVALKTGLVSALLESDCLEVVQIVNNRCSSMVEISWMISEILEMNNSFQ------ 102
+ QV LKT + S + + NRC S +E + + ILE NN Q
Sbjct: 194 FRLPKQVQLKTSVCSQYV------IRMQPTNRCLSTLECAAVALSILEKNNCIQETLLRP 247
Query: 103 -----NFRAQHTATINNSAAHALR 121
+F+ QH A I S + LR
Sbjct: 248 LQALCSFQLQHGAQIRLSKEYLLR 271
>sp|Q54WG6|H2AX_DICDI Histone H2A.x OS=Dictyostelium discoideum GN=H2AX PE=1 SV=1
Length = 154
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 7/49 (14%)
Query: 62 VSALLESDCLEVVQIVNNRCS-------SMVEISWMISEILEMNNSFQN 103
++A+LE E++++ +N CS + I+W + LE+N+ FQ+
Sbjct: 71 LAAVLEYLVFEILELAHNTCSISKKTRITPQHINWAVGNDLELNSLFQH 119
>sp|P70566|TMOD2_RAT Tropomodulin-2 OS=Rattus norvegicus GN=Tmod2 PE=1 SV=1
Length = 351
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 61 LVSALLESDCLEVVQIVNNRCSSMVEISWMISEILEMNNSFQNFRAQHT 109
LV AL E+D L ++I N R + I+++LE N+ F Q T
Sbjct: 274 LVEALRENDTLTEIKIDNQRQQLGTAVEMEIAQMLEENSRILKFGYQFT 322
>sp|Q9JKK7|TMOD2_MOUSE Tropomodulin-2 OS=Mus musculus GN=Tmod2 PE=1 SV=2
Length = 351
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 61 LVSALLESDCLEVVQIVNNRCSSMVEISWMISEILEMNNSFQNFRAQHT 109
LV AL E+D L ++I N R + I+++LE N+ F Q T
Sbjct: 274 LVEALRENDTLTEIKIDNQRQQLGTAVEMEIAQMLEENSRILKFGYQFT 322
>sp|Q9AAK0|CHEB2_CAUCR Chemotaxis response regulator protein-glutamate methylesterase of
group 2 operon OS=Caulobacter crescentus (strain ATCC
19089 / CB15) GN=cheB2 PE=3 SV=1
Length = 347
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 16 LGVVI----RDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALK-TGLVSALLESDC 70
LGVV+ RD +D V A + I +A EA ++ WGM A+ GL A+L D
Sbjct: 278 LGVVLTGMGRDGRDGAAVLAKVGGTI---IAQDEATSVVWGMPGAVANAGLAEAVLPLD- 333
Query: 71 LEVVQIVNNRCSSM 84
++ + +R S+
Sbjct: 334 -QIGPYIASRARSV 346
>sp|Q9NZR1|TMOD2_HUMAN Tropomodulin-2 OS=Homo sapiens GN=TMOD2 PE=1 SV=1
Length = 351
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 61 LVSALLESDCLEVVQIVNNRCSSMVEISWMISEILEMNNSFQNFRAQHT 109
LV AL E+D L ++I N R + I+++LE N+ F Q T
Sbjct: 274 LVEALKENDTLTEIKIDNQRQQLGTAVEMEIAQMLEENSRILKFGYQFT 322
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.131 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,377,241
Number of Sequences: 539616
Number of extensions: 1169248
Number of successful extensions: 3939
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3933
Number of HSP's gapped (non-prelim): 9
length of query: 127
length of database: 191,569,459
effective HSP length: 93
effective length of query: 34
effective length of database: 141,385,171
effective search space: 4807095814
effective search space used: 4807095814
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)