Query 038317
Match_columns 127
No_of_seqs 112 out of 1084
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 16:43:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038317.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038317hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hst_B Protein RV2228C/MT2287; 100.0 9.9E-33 3.4E-37 175.5 14.6 125 1-126 6-132 (141)
2 3u3g_D Ribonuclease H, RNAse H 100.0 7E-33 2.4E-37 175.8 13.2 125 1-126 6-136 (140)
3 2ehg_A Ribonuclease HI; RNAse 100.0 2.3E-31 7.8E-36 171.0 13.2 124 1-126 4-133 (149)
4 2qkb_A Ribonuclease H1, HS-RNA 100.0 3E-27 1E-31 152.5 14.4 123 1-127 10-151 (154)
5 3h08_A RNH (ribonuclease H); R 99.9 1.2E-26 4E-31 148.5 9.0 120 1-126 7-143 (146)
6 1jl1_A Ribonuclease HI; RNAse 99.9 3.8E-26 1.3E-30 147.5 9.9 120 1-126 7-142 (155)
7 2e4l_A Ribonuclease HI, RNAse 99.9 7.9E-26 2.7E-30 146.5 10.0 120 1-126 9-144 (158)
8 3qio_A GAG-POL polyprotein; RN 99.9 2E-25 6.8E-30 143.4 11.5 117 1-127 15-147 (150)
9 1ril_A Ribonuclease H; hydrola 99.9 1E-25 3.4E-30 147.0 8.4 121 1-127 11-148 (166)
10 3p1g_A Xenotropic murine leuke 99.9 5.2E-24 1.8E-28 138.6 13.2 120 1-126 26-155 (165)
11 2lsn_A Reverse transcriptase; 99.9 6.1E-24 2.1E-28 138.2 12.7 124 1-126 10-162 (165)
12 2kq2_A Ribonuclease H-related 99.9 1.3E-24 4.3E-29 139.3 4.4 120 1-127 9-137 (147)
13 1mu2_A HIV-2 RT; HIV-2 reverse 99.8 4.8E-20 1.7E-24 139.4 10.6 113 1-125 439-555 (555)
14 2zd1_A Reverse transcriptase/r 99.8 3.8E-20 1.3E-24 140.0 7.3 112 1-124 442-557 (557)
15 1zbf_A Ribonuclease H-related 99.8 2.9E-19 9.8E-24 113.4 9.1 93 1-97 14-111 (142)
16 4htu_A Ribonuclease H, RNAse H 99.8 3.8E-18 1.3E-22 106.7 10.1 91 1-95 8-103 (134)
17 1uwz_A Cytidine deaminase; CDD 93.4 0.14 4.6E-06 31.7 4.5 57 13-70 23-79 (136)
18 2fr5_A Cytidine deaminase; tet 92.4 0.17 5.9E-06 31.7 4.0 57 13-70 35-91 (146)
19 2z3g_A Blasticidin-S deaminase 88.3 0.61 2.1E-05 28.5 3.8 55 13-70 26-80 (130)
20 1r5t_A Cytidine deaminase; zin 88.1 0.78 2.7E-05 28.5 4.2 58 13-70 31-88 (142)
21 2d30_A Cytidine deaminase; pur 87.7 0.79 2.7E-05 28.5 4.0 56 14-70 33-88 (141)
22 2nx8_A TRNA-specific adenosine 87.3 0.59 2E-05 30.2 3.4 56 13-69 35-91 (179)
23 2a8n_A Cytidine and deoxycytid 86.5 0.58 2E-05 29.0 3.0 56 13-69 23-79 (144)
24 2b3j_A TRNA adenosine deaminas 85.6 0.83 2.8E-05 28.8 3.4 56 13-69 26-82 (159)
25 1wwr_A TRNA adenosine deaminas 85.5 0.81 2.8E-05 29.3 3.3 56 13-69 42-98 (171)
26 1wkq_A Guanine deaminase; doma 83.5 1 3.5E-05 28.7 3.1 54 15-69 33-87 (164)
27 3dh1_A TRNA-specific adenosine 83.3 1.2 4.1E-05 29.0 3.4 42 14-56 46-88 (189)
28 1rw3_A POL polyprotein; RNA an 82.7 0.21 7.1E-06 36.8 -0.4 54 26-80 371-428 (455)
29 2g84_A Cytidine and deoxycytid 82.6 2.5 8.4E-05 27.7 4.8 41 16-56 50-92 (197)
30 1z3a_A TRNA-specific adenosine 82.2 1 3.6E-05 28.7 2.8 54 14-68 29-83 (168)
31 3r2n_A Cytidine deaminase; str 80.6 1.5 5.2E-05 27.1 3.1 55 14-69 31-85 (138)
32 3mpz_A Cytidine deaminase; ssg 80.4 1.6 5.3E-05 27.4 3.1 55 14-69 46-100 (150)
33 4h8e_A Undecaprenyl pyrophosph 79.4 2.5 8.6E-05 28.9 4.1 91 13-113 25-121 (256)
34 2zd1_B P51 RT; P51/P66, hetero 78.9 4.8 0.00016 29.4 5.7 66 14-79 335-405 (428)
35 3b8f_A Putative blasticidin S 78.7 2.1 7.1E-05 26.5 3.2 54 15-69 24-77 (142)
36 3dmo_A Cytidine deaminase; str 75.0 4.2 0.00014 25.1 3.9 56 14-70 32-89 (138)
37 3oj6_A Blasticidin-S deaminase 72.1 10 0.00035 23.9 5.2 53 14-69 51-103 (158)
38 1p6o_A Cytosine deaminase; hyd 71.8 2.4 8.2E-05 26.8 2.3 41 14-54 34-76 (161)
39 2w4l_A DCMP deaminse, deoxycyt 69.8 3.4 0.00012 26.5 2.7 52 13-68 31-102 (178)
40 3tue_A Tryparedoxin peroxidase 66.2 26 0.00087 23.2 6.8 53 6-60 138-190 (219)
41 3sbc_A Peroxiredoxin TSA1; alp 64.4 28 0.00095 23.0 6.7 52 7-60 135-186 (216)
42 1ctt_A Cytidine deaminase; hyd 62.1 7.7 0.00026 27.0 3.4 58 13-70 208-266 (294)
43 3ugs_B Undecaprenyl pyrophosph 60.2 35 0.0012 22.8 8.7 89 15-113 9-103 (225)
44 3msh_A Hepatitis B virus X-int 58.9 24 0.00082 20.4 7.0 55 12-73 15-74 (99)
45 3gg7_A Uncharacterized metallo 58.8 4.7 0.00016 27.3 1.9 21 53-73 180-200 (254)
46 2hvw_A Deoxycytidylate deamina 55.7 24 0.00083 22.7 4.8 53 14-69 61-129 (184)
47 3cpt_A Mitogen-activated prote 55.1 19 0.00065 22.3 4.0 62 13-75 35-101 (143)
48 3ipw_A Hydrolase TATD family p 42.5 5.2 0.00018 28.2 -0.0 21 53-73 231-251 (325)
49 4eg2_A Cytidine deaminase; UMP 36.5 53 0.0018 22.9 4.3 64 6-70 206-270 (298)
50 3sgv_B Undecaprenyl pyrophosph 36.5 18 0.00061 24.7 1.9 54 14-71 19-72 (253)
51 1ctt_A Cytidine deaminase; hyd 35.5 38 0.0013 23.6 3.4 52 14-66 71-124 (294)
52 3qb8_A A654L protein; GNAT N-a 34.7 75 0.0026 19.0 4.7 33 48-80 128-160 (197)
53 3rcm_A TATD family hydrolase; 33.7 13 0.00045 25.5 0.9 20 54-73 194-213 (287)
54 3r8n_K 30S ribosomal protein S 31.1 85 0.0029 18.6 4.5 50 18-68 20-74 (117)
55 1kn6_A Prohormone convertase 1 30.2 50 0.0017 18.6 2.8 23 100-123 10-32 (90)
56 2vg0_A Short-chain Z-isoprenyl 29.7 1.2E+02 0.0042 20.0 6.9 67 41-113 28-98 (227)
57 3e2v_A 3'-5'-exonuclease; stru 28.0 23 0.00079 25.8 1.4 20 53-72 287-306 (401)
58 2vqe_K 30S ribosomal protein S 27.2 1.1E+02 0.0036 18.5 6.1 50 19-69 31-85 (129)
59 3j20_M 30S ribosomal protein S 27.0 1.1E+02 0.0038 18.6 5.3 50 19-69 29-84 (137)
60 1vq2_A DCMP deaminase, deoxycy 25.7 42 0.0014 21.5 2.2 25 42-68 103-127 (193)
61 3ewt_E Tumor necrosis factor r 25.5 48 0.0017 14.0 3.0 21 41-61 5-25 (25)
62 2g3a_A Acetyltransferase; stru 24.0 1.1E+02 0.0037 17.5 4.6 32 48-79 96-127 (152)
63 2xzm_K RPS14E; ribosome, trans 23.8 1.4E+02 0.0047 18.6 5.2 49 19-68 43-97 (151)
64 3a2v_A Probable peroxiredoxin; 23.7 1.7E+02 0.0057 19.5 5.2 42 17-60 126-167 (249)
65 1eoq_A GAG polyprotein capsid 23.4 54 0.0018 18.8 2.1 27 68-94 46-72 (96)
66 2xio_A Putative deoxyribonucle 21.3 37 0.0013 23.1 1.4 21 53-73 203-223 (301)
67 2hxv_A Diaminohydroxyphosphori 21.2 77 0.0026 22.4 3.1 36 14-53 36-71 (360)
68 1xcc_A 1-Cys peroxiredoxin; un 21.2 1.7E+02 0.0059 18.7 5.6 42 17-60 130-171 (220)
69 1sn9_A BBAT, tetrameric beta-B 21.1 57 0.002 13.3 1.4 9 116-124 9-17 (26)
70 2b3z_A Riboflavin biosynthesis 21.0 81 0.0028 22.5 3.1 36 14-53 36-71 (373)
71 3tjj_A Peroxiredoxin-4; thiore 20.9 1.9E+02 0.0065 19.1 5.4 42 17-60 184-225 (254)
72 2d4p_A Hypothetical protein TT 20.2 83 0.0029 19.2 2.7 23 49-71 80-102 (141)
No 1
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=100.00 E-value=9.9e-33 Score=175.54 Aligned_cols=125 Identities=17% Similarity=0.176 Sum_probs=112.6
Q ss_pred CcccceeecCCCeeEEEEEEecCC-CcEEEEeceeecccccHHHHHHHHHHHHHHHHHHcCCceEEEEeehHHHHHHHhc
Q 038317 1 INVDATVDVEKQVAGLGVVIRDDK-DNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTGLVSALLESDCLEVVQIVNN 79 (127)
Q Consensus 1 ~n~Dgs~~~~~~~~g~G~vi~~~~-g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sDs~~vi~~~~~ 79 (127)
+|||||+.++++.+|+|++++++. |.++...+..++ ..++++||+.|++.||+++.+.|.++|.|+|||+++++.+++
T Consensus 6 iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~i~~ 84 (141)
T 3hst_B 6 IEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIG-RATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQMSG 84 (141)
T ss_dssp EEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEE-EECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHTT
T ss_pred EEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCC-CCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHHHhC
Confidence 589999999999999999999987 666666666564 679999999999999999999999999999999999999999
Q ss_pred CCCCc-chHHHHHHHHHHHhhcCCcEEEEEecCCccHHHHHHHHhhhc
Q 038317 80 RCSSM-VEISWMISEILEMNNSFQNFRAQHTATINNSAAHALRFKICK 126 (127)
Q Consensus 80 ~~~~~-~~~~~~~~~i~~l~~~~~~~~~~~i~r~~N~~Ad~LA~~a~~ 126 (127)
.+... ..+..++.+|+.++++|..++|.||||++|+.||.|||.|++
T Consensus 85 ~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~~~N~~AD~LA~~a~~ 132 (141)
T 3hst_B 85 RWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYADRLANDAMD 132 (141)
T ss_dssp SSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCGGGCHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCCcccHHHHHHHHHHHH
Confidence 76543 468889999999999999999999999999999999999875
No 2
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=100.00 E-value=7e-33 Score=175.83 Aligned_cols=125 Identities=19% Similarity=0.142 Sum_probs=113.9
Q ss_pred CcccceeecCCCeeEEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHHHcCCc----eEEEEeehHHHHHH
Q 038317 1 INVDATVDVEKQVAGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTGLV----SALLESDCLEVVQI 76 (127)
Q Consensus 1 ~n~Dgs~~~~~~~~g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~----~v~i~sDs~~vi~~ 76 (127)
+|||||+..+++.+|+|+++++++|..+...+...+ ..|+++||+.|++.||+.+.+.+.+ +|.|+|||+++++.
T Consensus 6 iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~vi~~ 84 (140)
T 3u3g_D 6 IYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIG-ETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELIVRQ 84 (140)
T ss_dssp EEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEE-EECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHHHHH
T ss_pred EEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCC-CCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHHHHH
Confidence 589999999999999999999999988766776665 4799999999999999999999999 99999999999999
Q ss_pred HhcCCCC-cchHHHHHHHHHHH-hhcCCcEEEEEecCCccHHHHHHHHhhhc
Q 038317 77 VNNRCSS-MVEISWMISEILEM-NNSFQNFRAQHTATINNSAAHALRFKICK 126 (127)
Q Consensus 77 ~~~~~~~-~~~~~~~~~~i~~l-~~~~~~~~~~~i~r~~N~~Ad~LA~~a~~ 126 (127)
+++.++. ...+..++.+|..+ +++|..++|.||||++|+.||+|||.|++
T Consensus 85 i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~~~N~~AD~LA~~a~~ 136 (140)
T 3u3g_D 85 MQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPREKNARADELVNEAID 136 (140)
T ss_dssp HTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCGGGGHHHHHHHHHHHH
T ss_pred hCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCchhhHHHHHHHHHHHH
Confidence 9998754 34688899999999 99999999999999999999999999975
No 3
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.97 E-value=2.3e-31 Score=170.96 Aligned_cols=124 Identities=17% Similarity=0.151 Sum_probs=108.7
Q ss_pred Ccccceee-cCCCeeEE-EEEEecCCCcEEEEeceeec---ccccHHHHHHHHHHHHHHHHHHcCCceEEEEeehHHHHH
Q 038317 1 INVDATVD-VEKQVAGL-GVVIRDDKDNCIVAAIISYR---IFTNVAMAEAAAIKWGMQVALKTGLVSALLESDCLEVVQ 75 (127)
Q Consensus 1 ~n~Dgs~~-~~~~~~g~-G~vi~~~~g~~~~~~~~~~~---~~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sDs~~vi~ 75 (127)
+|||||+. .+++.+|+ |+++++ +|..+........ ...++++||+.|++.||+.+.+.|.++|.|+|||+.+++
T Consensus 4 iy~DGs~~~~n~g~~G~~G~vi~~-~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi~ 82 (149)
T 2ehg_A 4 GYFDGLCEPKNPGGIATFGFVIYL-DNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVIK 82 (149)
T ss_dssp EEEEEEEESSSSSSEEEEEEEEEC-SSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHHH
T ss_pred EEEeeccCCCCCChheEEEEEEEE-CCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHHH
Confidence 58999999 68889996 999999 7887654443332 367899999999999999999999999999999999999
Q ss_pred HHhcCCCCc-chHHHHHHHHHHHhhcCCcEEEEEecCCccHHHHHHHHhhhc
Q 038317 76 IVNNRCSSM-VEISWMISEILEMNNSFQNFRAQHTATINNSAAHALRFKICK 126 (127)
Q Consensus 76 ~~~~~~~~~-~~~~~~~~~i~~l~~~~~~~~~~~i~r~~N~~Ad~LA~~a~~ 126 (127)
++++.+... ..+..+++++..++++| .++|.||||++|+.||+||+.|++
T Consensus 83 ~i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~~~~N~~AD~LA~~a~~ 133 (149)
T 2ehg_A 83 QMNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVPREENKEADRLSRVAYE 133 (149)
T ss_dssp HHTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECCGGGCHHHHHHHHHHHH
T ss_pred HHhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcCCcccHHHHHHHHHHHH
Confidence 999986543 46889999999999988 699999999999999999999875
No 4
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.95 E-value=3e-27 Score=152.53 Aligned_cols=123 Identities=15% Similarity=0.076 Sum_probs=101.9
Q ss_pred CcccceeecCCC---eeEEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHHHcCCceEEEEeehHHHHHHH
Q 038317 1 INVDATVDVEKQ---VAGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTGLVSALLESDCLEVVQIV 77 (127)
Q Consensus 1 ~n~Dgs~~~~~~---~~g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sDs~~vi~~~ 77 (127)
++||||+.++++ .+|+|+++++..+..+ +..+.+..+++.||+.|++.||+.+.+.+.++|.|+|||+++|+.+
T Consensus 10 iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~---~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi~~i 86 (154)
T 2qkb_A 10 VYTDGCCSSNGRRRPRAGIGVYWGPGHPLNV---GIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTINGI 86 (154)
T ss_dssp EEEEEEEETTTSSSCEEEEEEECSTTCTTCE---EEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHHHHH
T ss_pred EEEccCcCCCCCCCCcEEEEEEEECCCceeE---EeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHHhhh
Confidence 589999998865 4899999998655433 2345556899999999999999999999999999999999999999
Q ss_pred hcC--------CC----CcchHHHHHHHHHHHhhcCCcEEEEEecCCc----cHHHHHHHHhhhcC
Q 038317 78 NNR--------CS----SMVEISWMISEILEMNNSFQNFRAQHTATIN----NSAAHALRFKICKR 127 (127)
Q Consensus 78 ~~~--------~~----~~~~~~~~~~~i~~l~~~~~~~~~~~i~r~~----N~~Ad~LA~~a~~~ 127 (127)
++. +. .+..+..++++|..++..+. +.|.|||++. |+.||+||+.|+++
T Consensus 87 ~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~~~~-v~~~~V~~H~g~~~N~~AD~LA~~a~~~ 151 (154)
T 2qkb_A 87 TNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMD-IQWMHVPGHSGFIGNEEADRLAREGAKQ 151 (154)
T ss_dssp HTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHTTCE-EEEEECCTTSSCHHHHHHHHHHHHHHTC
T ss_pred hhhHHHHHhccccccCCCccccHHHHHHHHHHHcCCc-eEEEEccCCCCCHhHHHHHHHHHHHHHh
Confidence 871 11 22356789999999888764 9999999855 99999999999864
No 5
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.94 E-value=1.2e-26 Score=148.52 Aligned_cols=120 Identities=19% Similarity=0.077 Sum_probs=99.5
Q ss_pred CcccceeecCCCeeEEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHHHcCCceEEEEeehHHHHHHHhcC
Q 038317 1 INVDATVDVEKQVAGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTGLVSALLESDCLEVVQIVNNR 80 (127)
Q Consensus 1 ~n~Dgs~~~~~~~~g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sDs~~vi~~~~~~ 80 (127)
++|||||.++++.+|+|+++++... ....+...+ ..|++.||+.|++.||+.+.+ ..+|.|+|||+++++.+++.
T Consensus 7 iytDGs~~~n~g~~g~G~v~~~~~~--~~~~~~~~~-~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~~~ 81 (146)
T 3h08_A 7 IYTDGAASGNPGKGGWGALLMYGSS--RKEISGYDP-ATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMNEG 81 (146)
T ss_dssp EEEEEEESSTTEEEEEEEEEEETTE--EEEEEEEEE-EECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHHSS
T ss_pred EEEecCCCCCCCceEEEEEEEECCe--eEEeecCCC-CCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHHHH
Confidence 5899999999999999999998542 333344443 578999999999999999976 58999999999999999883
Q ss_pred C-------------CCcchHHHHHHHHHHHhhcCCcEEEEEec----CCccHHHHHHHHhhhc
Q 038317 81 C-------------SSMVEISWMISEILEMNNSFQNFRAQHTA----TINNSAAHALRFKICK 126 (127)
Q Consensus 81 ~-------------~~~~~~~~~~~~i~~l~~~~~~~~~~~i~----r~~N~~Ad~LA~~a~~ 126 (127)
+ ..+.....+++++..+++++ .+.|.||| +++|+.||+|||.|++
T Consensus 82 w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~~-~v~~~~V~gH~g~~~N~~AD~LA~~a~~ 143 (146)
T 3h08_A 82 WLKRWVKNGWKTAAKKPVENIDLWQEILKLTTLH-RVTFHKVKGHSDNPYNSRADELARLAIK 143 (146)
T ss_dssp HHHHHHHTTCC----CCCTTHHHHHHHHHHHHHS-EEEEEECCC-CCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhhC-ceEEEEcCCcCCcHhHHHHHHHHHHHHH
Confidence 1 12335678999999888876 59999999 9999999999999975
No 6
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.93 E-value=3.8e-26 Score=147.54 Aligned_cols=120 Identities=13% Similarity=0.047 Sum_probs=98.2
Q ss_pred CcccceeecCCCeeEEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHHHcCCceEEEEeehHHHHHHHhc-
Q 038317 1 INVDATVDVEKQVAGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTGLVSALLESDCLEVVQIVNN- 79 (127)
Q Consensus 1 ~n~Dgs~~~~~~~~g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sDs~~vi~~~~~- 79 (127)
++||||+.++++.+|+|+++++..+... .+... +..|++.||+.|++.||+.+.+. .+|.|+|||+++++.+++
T Consensus 7 iytDGs~~~n~~~~G~G~v~~~~~~~~~--~~~~~-~~~tn~~aEl~A~~~aL~~~~~~--~~v~I~tDS~~vi~~i~~w 81 (155)
T 1jl1_A 7 IFTAGSALGNPGPGGYGAILRYRGREKT--FSAGY-TRTTNNRMELMAAIVALEALKEH--AEVILSTDSQYVRQGITQW 81 (155)
T ss_dssp EEEEEEESSTTEEEEEEEEEEETTEEEE--EEEEE-EEECHHHHHHHHHHHHHHTCCSC--CEEEEEECCHHHHHHHHTT
T ss_pred EEEccccCCCCCceEEEEEEEECCeEEE--EecCC-CCCcHHHHHHHHHHHHHHHhCcC--CcEEEEeCHHHHHHHHHHH
Confidence 5899999999999999999998654332 23334 35789999999999999999764 899999999999999997
Q ss_pred -------CCC----CcchHHHHHHHHHHHhhcCCcEEEEEec----CCccHHHHHHHHhhhc
Q 038317 80 -------RCS----SMVEISWMISEILEMNNSFQNFRAQHTA----TINNSAAHALRFKICK 126 (127)
Q Consensus 80 -------~~~----~~~~~~~~~~~i~~l~~~~~~~~~~~i~----r~~N~~Ad~LA~~a~~ 126 (127)
.+. .+.....+++++..+++. ..+.|.||| +++|+.||+||+.|++
T Consensus 82 ~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~-~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~ 142 (155)
T 1jl1_A 82 IHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ-HQIKWEWVKGHAGHPENERADELARAAAM 142 (155)
T ss_dssp HHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTT-CEEEEEECCSSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccccccCCccCCHHHHHHHHHHHcc-CceEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 221 133456789999888875 489999999 7899999999999985
No 7
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.93 E-value=7.9e-26 Score=146.45 Aligned_cols=120 Identities=13% Similarity=0.050 Sum_probs=97.8
Q ss_pred CcccceeecCCCeeEEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHHHcCCceEEEEeehHHHHHHHhc-
Q 038317 1 INVDATVDVEKQVAGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTGLVSALLESDCLEVVQIVNN- 79 (127)
Q Consensus 1 ~n~Dgs~~~~~~~~g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sDs~~vi~~~~~- 79 (127)
++||||+.++++.+|+|+|+++.. . ....+...+ ..+++.||+.|++.||+.+.+. .+|.|+|||+++|+.+++
T Consensus 9 iytDGs~~~n~g~~G~G~v~~~~~-~-~~~~~~~~~-~~tn~~aEl~A~~~AL~~~~~~--~~v~I~tDS~~vi~~i~~w 83 (158)
T 2e4l_A 9 IFTDGSCLGNPGPGGYGIVMNYKG-H-TKEMSDGFS-LTTNNRMELLAPIVALEALKEP--CKIILTSDSQYMRQGIMTW 83 (158)
T ss_dssp EEEEEEESSSSEEEEEEEEEEETT-E-EEEEEEEEE-EECHHHHHHHHHHHHHHTCSSC--CEEEEEECCHHHHHHHHTH
T ss_pred EEEcccccCCCCcEEEEEEEEECC-E-EEEEecCcC-CCccHHHHHHHHHHHHHHhccC--CeEEEEeCHHHHHHHHHHH
Confidence 589999999989999999999743 2 222334443 5789999999999999998653 899999999999999988
Q ss_pred -------CCC----CcchHHHHHHHHHHHhhcCCcEEEEEec----CCccHHHHHHHHhhhc
Q 038317 80 -------RCS----SMVEISWMISEILEMNNSFQNFRAQHTA----TINNSAAHALRFKICK 126 (127)
Q Consensus 80 -------~~~----~~~~~~~~~~~i~~l~~~~~~~~~~~i~----r~~N~~Ad~LA~~a~~ 126 (127)
.+. .+.....+++++..+++. ..+.|.||| +++|..||+||+.|++
T Consensus 84 ~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~-~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~ 144 (158)
T 2e4l_A 84 IHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQL-HQIDWRWVKGHAGHAENERCDQLARAAAE 144 (158)
T ss_dssp HHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTT-SEEEEEECCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccccccCCCcccCHHHHHHHHHHHcc-CcEEEEEccCCCCchhHHHHHHHHHHHHH
Confidence 332 233567888999888876 489999999 7799999999999985
No 8
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.93 E-value=2e-25 Score=143.36 Aligned_cols=117 Identities=15% Similarity=0.157 Sum_probs=95.7
Q ss_pred CcccceeecCCCeeEEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHHHcCCceEEEEeehHHHHHHHhcC
Q 038317 1 INVDATVDVEKQVAGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTGLVSALLESDCLEVVQIVNNR 80 (127)
Q Consensus 1 ~n~Dgs~~~~~~~~g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sDs~~vi~~~~~~ 80 (127)
++|||||..+++.+|+|+++++..+..+ .. +.+|++.||+.|++.||+.+ + .+|.|+|||+++++.+++.
T Consensus 15 iytDGs~~~n~g~~g~G~v~~~~~~~~~-----~~-~~~Tnn~aEl~A~i~AL~~~---~-~~v~i~tDS~~v~~~i~~w 84 (150)
T 3qio_A 15 FYVDGAANRETKLGKAGYVTNRGRQKVV-----TL-TDTTNQKTELQAIYLALQDS---G-LEVNIVTDSQYALGIITQW 84 (150)
T ss_dssp EEEEEEECTTTCCEEEEEEETTSCEEEE-----EE-SSCCHHHHHHHHHHHHHHHS---C-SEEEEEESCHHHHHHHHHH
T ss_pred EEEccCCCCCCCCeEEEEEEEcCCEEEE-----eC-CCCCHHHHHHHHHHHHHHhC---C-CcEEEEeCcHHHHHHHHHH
Confidence 5899999999999999999987543222 23 46799999999999999985 3 8999999999999999872
Q ss_pred --------C----CCcchHHHHHHHHHHHhhcCCcEEEEEecCCc----cHHHHHHHHhhhcC
Q 038317 81 --------C----SSMVEISWMISEILEMNNSFQNFRAQHTATIN----NSAAHALRFKICKR 127 (127)
Q Consensus 81 --------~----~~~~~~~~~~~~i~~l~~~~~~~~~~~i~r~~----N~~Ad~LA~~a~~~ 127 (127)
+ ..+.....+++++..++.++..+.|.||+++. |+.||+||++|+++
T Consensus 85 ~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 85 IHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp HHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred HHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 1 11235678899988877889999999999998 99999999999863
No 9
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.93 E-value=1e-25 Score=147.03 Aligned_cols=121 Identities=11% Similarity=0.006 Sum_probs=98.1
Q ss_pred CcccceeecCCCeeEEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHHHcCCceEEEEeehHHHHHHHhcC
Q 038317 1 INVDATVDVEKQVAGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTGLVSALLESDCLEVVQIVNNR 80 (127)
Q Consensus 1 ~n~Dgs~~~~~~~~g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sDs~~vi~~~~~~ 80 (127)
++||||+..+++.+|+|+|+++..+.... +... +..|++.||+.|++.||+.+.+. .+|.|+|||+++|+.+++.
T Consensus 11 iytDGs~~~n~g~~G~G~v~~~~~~~~~~--~~~~-~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~vi~~i~~~ 85 (166)
T 1ril_A 11 LFTDGACLGNPGPGGWAALLRFHAHEKLL--SGGE-ACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSHYLKKAFTEG 85 (166)
T ss_dssp EEEEEEESSTTEEEEEEEEECBTTBCCEE--CCEE-EEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHHHHHHHHSS
T ss_pred EEECccccCCCCCEEEEEEEEECCEEEEE--ecCC-CCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChHHHHHHHhhh
Confidence 58999999998999999999875543322 2223 35789999999999999988665 5999999999999999982
Q ss_pred ---------CC----CcchHHHHHHHHHHHhhcCCcEEEEEec----CCccHHHHHHHHhhhcC
Q 038317 81 ---------CS----SMVEISWMISEILEMNNSFQNFRAQHTA----TINNSAAHALRFKICKR 127 (127)
Q Consensus 81 ---------~~----~~~~~~~~~~~i~~l~~~~~~~~~~~i~----r~~N~~Ad~LA~~a~~~ 127 (127)
+. .+.....+++++..++..+ .+.|.||| +++|..||.||+.|+++
T Consensus 86 w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~~-~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 148 (166)
T 1ril_A 86 WLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPH-RVRFHFVKGHTGHPENERVDREARRQAQS 148 (166)
T ss_dssp HHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTTS-EEECCCCCGGGSCTHHHHHHHHHHHHHTS
T ss_pred HHHHHHhcccccccCCccCcHHHHHHHHHHHhcC-eEEEEEeeCCCCchhHHHHHHHHHHHHHH
Confidence 22 1234567899999888764 89999999 88999999999999863
No 10
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.92 E-value=5.2e-24 Score=138.58 Aligned_cols=120 Identities=13% Similarity=0.023 Sum_probs=97.3
Q ss_pred CcccceeecCCCeeEEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHHHcCCceEEEEeehHHHHHHHhcC
Q 038317 1 INVDATVDVEKQVAGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTGLVSALLESDCLEVVQIVNNR 80 (127)
Q Consensus 1 ~n~Dgs~~~~~~~~g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sDs~~vi~~~~~~ 80 (127)
++||||+.++++.+|+|+++.+. |..+. .. ..+..++++.||+.|++.||+.+ ...+|.|+|||+++++.+-..
T Consensus 26 iytDGs~~~npG~~g~G~vi~~~-~~~~~-~~-~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~vi~~iw~~ 99 (165)
T 3p1g_A 26 WYTDGSSFLQEGQRRAGAAVTTE-TEVIW-AR-ALPAGTSAQRAELIALTQALKMA---EGKKLNVYTDSRYAFATAHVH 99 (165)
T ss_dssp EEEEEEEEEETTEEEEEEEEECS-SCEEE-EE-EECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHHHHHHHHSC
T ss_pred EEEEcccCCCCCceEEEEEEEEC-CEEEE-Ee-cCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHHHHhhhhcc
Confidence 47999999999999999999874 54443 22 45567799999999999999998 368999999999999988422
Q ss_pred C-CCcchHHHHHHHHHHHhhcCCcEEEEEecCCc---------cHHHHHHHHhhhc
Q 038317 81 C-SSMVEISWMISEILEMNNSFQNFRAQHTATIN---------NSAAHALRFKICK 126 (127)
Q Consensus 81 ~-~~~~~~~~~~~~i~~l~~~~~~~~~~~i~r~~---------N~~Ad~LA~~a~~ 126 (127)
. ..+.....+++++...+.++..+.|.||+++. |+.||+|||.|++
T Consensus 100 ~~g~~v~n~dl~~~l~~~l~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~ 155 (165)
T 3p1g_A 100 SEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAM 155 (165)
T ss_dssp CCSCCCSSHHHHHHHHHHTTSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHHhcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHh
Confidence 1 22334567888887666678999999999877 8999999999875
No 11
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.92 E-value=6.1e-24 Score=138.16 Aligned_cols=124 Identities=21% Similarity=0.133 Sum_probs=97.4
Q ss_pred CcccceeecCCCe-----eEEEEEEecCCCc--EEEEeceeecccccHHHHHHHHHHHHHHHHHHcCCceEEEEeehHHH
Q 038317 1 INVDATVDVEKQV-----AGLGVVIRDDKDN--CIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTGLVSALLESDCLEV 73 (127)
Q Consensus 1 ~n~Dgs~~~~~~~-----~g~G~vi~~~~g~--~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sDs~~v 73 (127)
++|||||..++++ +|+|+++...... ....... -....+.++||+.|+..+++.+.+.+ .+|.|+|||+++
T Consensus 10 iYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~-~tnn~te~~Aei~Al~~al~~al~~~-~~v~I~TDS~Yv 87 (165)
T 2lsn_A 10 FYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSI-PLGNHTAQMAEIAAVEFACKKALKIP-GPVLVITDSFYV 87 (165)
T ss_dssp EEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEE-EESSCCHHHHHHHHHHHHHHHHHHSS-SCEEEEESCHHH
T ss_pred EEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccC-CchHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEeChHHH
Confidence 4799999999775 9999999854433 3322222 22356788999999999999998877 479999999999
Q ss_pred HHHHhc--------CC----CCcchHHHHHHHHHHHhhcCCcEEEEEecCC----------ccHHHHHHHHhhhc
Q 038317 74 VQIVNN--------RC----SSMVEISWMISEILEMNNSFQNFRAQHTATI----------NNSAAHALRFKICK 126 (127)
Q Consensus 74 i~~~~~--------~~----~~~~~~~~~~~~i~~l~~~~~~~~~~~i~r~----------~N~~Ad~LA~~a~~ 126 (127)
++.++. .+ ..+.....|++++..++..+..++|.||+.+ .|+.||+||++|..
T Consensus 88 i~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA~ 162 (165)
T 2lsn_A 88 AESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQGSY 162 (165)
T ss_dssp HHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhhh
Confidence 999975 11 2233567899999998888899999999854 59999999999863
No 12
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.90 E-value=1.3e-24 Score=139.26 Aligned_cols=120 Identities=8% Similarity=-0.035 Sum_probs=89.8
Q ss_pred CcccceeecCCCeeEEEEEEecCCCcEE-EEe-ceeecc--cccHHHHHHHHHHHHHHHHHHcCCceEEEEeehHHHHHH
Q 038317 1 INVDATVDVEKQVAGLGVVIRDDKDNCI-VAA-IISYRI--FTNVAMAEAAAIKWGMQVALKTGLVSALLESDCLEVVQI 76 (127)
Q Consensus 1 ~n~Dgs~~~~~~~~g~G~vi~~~~g~~~-~~~-~~~~~~--~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sDs~~vi~~ 76 (127)
++|||||.+ +.+|+|+++++ +|... ... ....+. ..+++.||+.|++.||+.+.+.+. +|.|+|||+.++++
T Consensus 9 iytDGs~~~--g~~G~G~vi~~-~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i~~w 84 (147)
T 2kq2_A 9 VYTDGSYVN--GQYAWAYAFVK-DGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGIAFW 84 (147)
T ss_dssp EECCCCCBT--TBCEEEEEEEE-TTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTHHHH
T ss_pred EEECCCCCC--CCcEEEEEEEE-CCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHHHHH
Confidence 589999988 89999999997 45432 211 111232 358999999999999999999999 99999999999999
Q ss_pred HhcCCCCcch-HHHHHHHHHHHhhcCCcEEEEEecC----CccHHHHHHHHhhhcC
Q 038317 77 VNNRCSSMVE-ISWMISEILEMNNSFQNFRAQHTAT----INNSAAHALRFKICKR 127 (127)
Q Consensus 77 ~~~~~~~~~~-~~~~~~~i~~l~~~~~~~~~~~i~r----~~N~~Ad~LA~~a~~~ 127 (127)
+++.+..... ...+.+.++.+.. .++|.|||+ ++|+.||+|||.|++.
T Consensus 85 ~~~~w~~~~~~~~~~~~l~~~l~~---~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 137 (147)
T 2kq2_A 85 ATGEWKAKNEFTQAYAKLMNQYRG---IYSFEKVKAHSGNEFNDYVDMKAKSALGI 137 (147)
T ss_dssp TTSSSSCCHHHHHHHHCGGGGGST---TCCBCCCCCCCCCHHHHHHHHHHHHHHTC
T ss_pred HhCCCccCCcchHHHHHHHHHhcC---CeeEEEecCcCCCcchHHHHHHHHHHHhc
Confidence 9887655432 2223333333322 789999984 6799999999999863
No 13
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.82 E-value=4.8e-20 Score=139.36 Aligned_cols=113 Identities=16% Similarity=0.078 Sum_probs=93.1
Q ss_pred CcccceeecCCCeeEEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHHHcCCceEEEEeehHHHHHHHhcC
Q 038317 1 INVDATVDVEKQVAGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTGLVSALLESDCLEVVQIVNNR 80 (127)
Q Consensus 1 ~n~Dgs~~~~~~~~g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sDs~~vi~~~~~~ 80 (127)
++||||+..+++.+|+|+++.+..+. .... ...|++.||+.|++.||+. +..+|.|+|||+++++.+++
T Consensus 439 iytDGs~~~n~g~~g~G~v~~~~~~~-----~~~~-~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i~~- 507 (555)
T 1mu2_A 439 FYTDGSCNRQSKEGKAGYVTDRGKDK-----VKKL-EQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVAS- 507 (555)
T ss_dssp EEEEEEECTTTCCEEEEEEETTSCEE-----EEEE-SSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHHT-
T ss_pred EEEcccccCCCCCceEEEEEEeCCEe-----eccC-CCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHHhc-
Confidence 47999999999999999999875432 2223 3578999999999999988 77999999999999999998
Q ss_pred CCCcchHHHHHHHHHHHhhcCCcEEEEEecC----CccHHHHHHHHhhh
Q 038317 81 CSSMVEISWMISEILEMNNSFQNFRAQHTAT----INNSAAHALRFKIC 125 (127)
Q Consensus 81 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~i~r----~~N~~Ad~LA~~a~ 125 (127)
+... ....+++++..++.++..+.|.||++ .+|+.||+||+.|+
T Consensus 508 ~~~~-~~~~l~~~~~~~~~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 508 QPTE-SESKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp CCSE-ESCHHHHHHHHHHHHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred cccc-ccHHHHHHHHHHhccCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 3322 34567777777777789999999998 46999999999874
No 14
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.81 E-value=3.8e-20 Score=140.02 Aligned_cols=112 Identities=15% Similarity=0.125 Sum_probs=88.6
Q ss_pred CcccceeecCCCeeEEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHHHcCCceEEEEeehHHHHHHHhcC
Q 038317 1 INVDATVDVEKQVAGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTGLVSALLESDCLEVVQIVNNR 80 (127)
Q Consensus 1 ~n~Dgs~~~~~~~~g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sDs~~vi~~~~~~ 80 (127)
++||||+..+++.+|+|+++.+.....+ .. ...|++.||+.|++.||+.+ ..+|.|+|||+++++.+++.
T Consensus 442 iytDGs~~~n~g~~g~g~v~~~~~~~~~-----~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i~~~ 511 (557)
T 2zd1_A 442 FYVDGAANRETKLGKAGYVTNKGRQKVV-----PL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIQAQ 511 (557)
T ss_dssp EEEEEEECTTTCCEEEEEEETTSCEEEE-----EE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHHTTC
T ss_pred EEEccCCCCCCCceEEEEEEECCcEEEe-----cC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHHhcC
Confidence 4799999999999999999985332222 23 35789999999999999998 68999999999999999984
Q ss_pred CCCcchHHHHHHHHHHHhhcCCcEEEEEecCC----ccHHHHHHHHhh
Q 038317 81 CSSMVEISWMISEILEMNNSFQNFRAQHTATI----NNSAAHALRFKI 124 (127)
Q Consensus 81 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~i~r~----~N~~Ad~LA~~a 124 (127)
.. . ....+++++...+.++..+.|.||+++ +|+.||+||++|
T Consensus 512 ~~-~-~~~~l~~~~~~~l~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 512 PD-K-SESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp CS-E-ESSHHHHHHHHHHHHCSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred Cc-c-CCHHHHHHHHHHHhcCCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 22 2 245667777766666789999999995 599999999976
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.80 E-value=2.9e-19 Score=113.44 Aligned_cols=93 Identities=13% Similarity=0.095 Sum_probs=75.6
Q ss_pred CcccceeecCCCeeEEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHHHcCCceEEEEeehHHHHHHHhcC
Q 038317 1 INVDATVDVEKQVAGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTGLVSALLESDCLEVVQIVNNR 80 (127)
Q Consensus 1 ~n~Dgs~~~~~~~~g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sDs~~vi~~~~~~ 80 (127)
++|||||..+++.+|+|+|++ ..|..+... ..+. ..|+++||++|++.||+.+.+.+. +|.|+|||+++|+++++.
T Consensus 14 iy~DGa~~gNpG~~G~G~vl~-~~g~~~~~~-~~~~-~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w~~~~ 89 (142)
T 1zbf_A 14 LSVDVGSQGNPGIVEYKGVDT-KTGEVLFER-EPIP-IGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWVKDK 89 (142)
T ss_dssp EEEEEEECSSSEEEEEEEEET-TTCCEEEEC-CCEE-EECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHHHHT
T ss_pred EEEeeccCCCCCCeEEEEEEE-eCCEEEEEe-cccC-CcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHHHHcC
Confidence 589999999999999999999 677765533 3343 578999999999999999999999 999999999999999987
Q ss_pred CC-----CcchHHHHHHHHHHH
Q 038317 81 CS-----SMVEISWMISEILEM 97 (127)
Q Consensus 81 ~~-----~~~~~~~~~~~i~~l 97 (127)
+. .+.....+++.+..+
T Consensus 90 ~~k~~~~~~v~n~dLw~~l~~~ 111 (142)
T 1zbf_A 90 KAKSTLVRNEETALIWKLVDEA 111 (142)
T ss_dssp CCCCCCCCSTTTHHHHHHHHHH
T ss_pred CccCCCCCCcccHHHHHHHHHH
Confidence 52 223456666666544
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.77 E-value=3.8e-18 Score=106.72 Aligned_cols=91 Identities=12% Similarity=0.089 Sum_probs=71.8
Q ss_pred CcccceeecCCCeeEEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHHHcCCceEEEEeehHHHHHHHhcC
Q 038317 1 INVDATVDVEKQVAGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTGLVSALLESDCLEVVQIVNNR 80 (127)
Q Consensus 1 ~n~Dgs~~~~~~~~g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sDs~~vi~~~~~~ 80 (127)
++|||||.++++.+|+|+|+++ .|..+... ..++ .+|+++||++|++.||+.+.+.+.+ |.|+|||++|++++++.
T Consensus 8 iytDGac~GNPGp~G~ggV~~~-~g~~~~~~-g~~~-~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~wi~~~ 83 (134)
T 4htu_A 8 LSVDVGSQGNPGIVEYKGVDTK-TGEVLFER-EPIP-IGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKWVKDK 83 (134)
T ss_dssp EEEEEEEETTTEEEEEEEEETT-TCCEEEEE-EEEE-EECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHHHHHT
T ss_pred EEEeeccCCCCCCeEEEEEEEE-CCEEEEEe-cCCC-CCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHHHHcC
Confidence 5899999999999999888887 66654433 3343 6899999999999999999998876 89999999999999863
Q ss_pred -CC----CcchHHHHHHHHH
Q 038317 81 -CS----SMVEISWMISEIL 95 (127)
Q Consensus 81 -~~----~~~~~~~~~~~i~ 95 (127)
+. .+.....+++.+.
T Consensus 84 ~~kt~~~~~vkN~dLw~~ld 103 (134)
T 4htu_A 84 KAKSTLVRNEETALIWKLVD 103 (134)
T ss_dssp CCCCCCCCSSTTHHHHHHHH
T ss_pred CcccCCCCCccCHHHHHHHH
Confidence 11 1224556666665
No 17
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=93.42 E-value=0.14 Score=31.72 Aligned_cols=57 Identities=14% Similarity=0.094 Sum_probs=41.3
Q ss_pred eeEEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHHHcCCceEEEEeeh
Q 038317 13 VAGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTGLVSALLESDC 70 (127)
Q Consensus 13 ~~g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sDs 70 (127)
...+|.++++.+|+++.+.............||..|+..|... -...+..+.+.+|.
T Consensus 23 ~~~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~~~~~~~~l~~~~ 79 (136)
T 1uwz_A 23 KFQVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSE-GDTEFQMLAVAADT 79 (136)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHH-TCCCEEEEEEEESC
T ss_pred CCCEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHHC-CCCCeEEEEEEeCC
Confidence 3468899998889988655543333334579999999999875 44567888888863
No 18
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=92.42 E-value=0.17 Score=31.66 Aligned_cols=57 Identities=14% Similarity=0.081 Sum_probs=41.3
Q ss_pred eeEEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHHHcCCceEEEEeeh
Q 038317 13 VAGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTGLVSALLESDC 70 (127)
Q Consensus 13 ~~g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sDs 70 (127)
...+|.++++.+|+++.+...-.........||..|+..|... -...+..+.+.+|.
T Consensus 35 ~f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~ 91 (146)
T 2fr5_A 35 RFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDL 91 (146)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESC
T ss_pred CCCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCC
Confidence 3468899998899988655543333334579999999999875 44567888888874
No 19
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=88.29 E-value=0.61 Score=28.50 Aligned_cols=55 Identities=9% Similarity=0.001 Sum_probs=39.1
Q ss_pred eeEEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHHHcCCceEEEEeeh
Q 038317 13 VAGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTGLVSALLESDC 70 (127)
Q Consensus 13 ~~g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sDs 70 (127)
...+|.++++.+|+++.+.... .......||..|+..|... -...+..+.+.+|.
T Consensus 26 ~f~VGAal~~~dG~i~~G~NvE--~~~~t~cAE~~Ai~~A~~~-G~~~~~~i~vv~~~ 80 (130)
T 2z3g_A 26 DYSVASAALSSDGRIFTGVNVY--HFTGGPCAELVVLGTAAAA-AAGNLTCIVAIGNE 80 (130)
T ss_dssp SSCEEEEEEETTSCEEEEECCC--CTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEETT
T ss_pred CCCEEEEEEecCCeEEEEeccc--cCCcccCHHHHHHHHHHHc-CCCceEEEEEEECC
Confidence 3568899998899887654432 2344679999999998864 23456788888764
No 20
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=88.06 E-value=0.78 Score=28.48 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=40.7
Q ss_pred eeEEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHHHcCCceEEEEeeh
Q 038317 13 VAGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTGLVSALLESDC 70 (127)
Q Consensus 13 ~~g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sDs 70 (127)
....|.++++.+|+++.+...-.......+.||-.|+..+...-....+..+.+.+|.
T Consensus 31 ~f~VGAAl~~~dG~i~~G~NvEnasy~~t~cAEr~Ai~~a~~~G~~~~i~~i~vv~~~ 88 (142)
T 1r5t_A 31 HFRVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMAGHRSGWKCMVICGDS 88 (142)
T ss_dssp CCCEEEEEECTTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCSCCCEEEEEESC
T ss_pred CCCEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHHHcCCCCceEEEEEEeCC
Confidence 3468899999999988766543333334579999999988864322127788888764
No 21
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=87.73 E-value=0.79 Score=28.47 Aligned_cols=56 Identities=11% Similarity=0.085 Sum_probs=40.6
Q ss_pred eEEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHHHcCCceEEEEeeh
Q 038317 14 AGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTGLVSALLESDC 70 (127)
Q Consensus 14 ~g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sDs 70 (127)
-..|.++++.+|+++.+...-.......+.||-.|+..|+.. -...+..|.+.+|.
T Consensus 33 f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~-G~~~~~aiav~~~~ 88 (141)
T 2d30_A 33 FQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSE-GDKEFVAIAIVADT 88 (141)
T ss_dssp CCEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESC
T ss_pred CcEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHC-CCCceEEEEEEeCC
Confidence 367888998899888766644433444579999999988864 23456888888775
No 22
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=87.27 E-value=0.59 Score=30.21 Aligned_cols=56 Identities=18% Similarity=0.014 Sum_probs=33.7
Q ss_pred eeEEEEEEecCCCcEEEEeceeecc-cccHHHHHHHHHHHHHHHHHHcCCceEEEEee
Q 038317 13 VAGLGVVIRDDKDNCIVAAIISYRI-FTNVAMAEAAAIKWGMQVALKTGLVSALLESD 69 (127)
Q Consensus 13 ~~g~G~vi~~~~g~~~~~~~~~~~~-~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sD 69 (127)
..-+|.||-+ +|+++..+...... .....+||..||..|.+..-...+...++|+.
T Consensus 35 ~~pVGAVIV~-~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~~l~g~tlYvT 91 (179)
T 2nx8_A 35 EIPIGCVIVK-DGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFVT 91 (179)
T ss_dssp SCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEEE
T ss_pred CCCEEEEEEE-CCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCCcccceEEEEC
Confidence 3456777776 78877644432221 22245999999999876543334455555554
No 23
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=86.55 E-value=0.58 Score=28.99 Aligned_cols=56 Identities=21% Similarity=0.068 Sum_probs=34.3
Q ss_pred eeEEEEEEecCCCcEEEEeceeecc-cccHHHHHHHHHHHHHHHHHHcCCceEEEEee
Q 038317 13 VAGLGVVIRDDKDNCIVAAIISYRI-FTNVAMAEAAAIKWGMQVALKTGLVSALLESD 69 (127)
Q Consensus 13 ~~g~G~vi~~~~g~~~~~~~~~~~~-~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sD 69 (127)
..-+|.||.+ +|+++..+...... .....+||..|+..+.+..-...+....+++.
T Consensus 23 ~~~VGAviv~-~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~~~~~tly~T 79 (144)
T 2a8n_A 23 EVPIGAVLVL-DGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYVT 79 (144)
T ss_dssp SCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEEEE
T ss_pred CCCEEEEEEE-CCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCCCccCCeEEEEC
Confidence 3456777777 78877544432221 22245899999999876543344555666643
No 24
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=85.60 E-value=0.83 Score=28.83 Aligned_cols=56 Identities=23% Similarity=0.148 Sum_probs=34.8
Q ss_pred eeEEEEEEecCCCcEEEEeceeec-ccccHHHHHHHHHHHHHHHHHHcCCceEEEEee
Q 038317 13 VAGLGVVIRDDKDNCIVAAIISYR-IFTNVAMAEAAAIKWGMQVALKTGLVSALLESD 69 (127)
Q Consensus 13 ~~g~G~vi~~~~g~~~~~~~~~~~-~~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sD 69 (127)
..-+|.||.+ +|+++..+..... ......+||..||..+.+..-...+...++++.
T Consensus 26 ~~pVGAviv~-~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tlyvT 82 (159)
T 2b3j_A 26 EVPIGAIITK-DDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVT 82 (159)
T ss_dssp SCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEEE
T ss_pred CCCEEEEEEE-CCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCCCcceeEEEEC
Confidence 3456777776 7887754442221 112345999999998877544445566677654
No 25
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=85.50 E-value=0.81 Score=29.32 Aligned_cols=56 Identities=23% Similarity=0.053 Sum_probs=35.7
Q ss_pred eeEEEEEEecCCCcEEEEeceeecc-cccHHHHHHHHHHHHHHHHHHcCCceEEEEee
Q 038317 13 VAGLGVVIRDDKDNCIVAAIISYRI-FTNVAMAEAAAIKWGMQVALKTGLVSALLESD 69 (127)
Q Consensus 13 ~~g~G~vi~~~~g~~~~~~~~~~~~-~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sD 69 (127)
..-+|.||.+ +|+++..+...... .....+||..||..|.+..-...+....+++.
T Consensus 42 ~~pVGAvIV~-dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~~l~~~tlYvT 98 (171)
T 1wwr_A 42 EVPVGAIIVK-EGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVT 98 (171)
T ss_dssp SCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEES
T ss_pred CCCEEEEEEE-CCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCCccCceEEEEC
Confidence 3456777776 78887544432221 22245899999998877544445677777754
No 26
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=83.46 E-value=1 Score=28.65 Aligned_cols=54 Identities=22% Similarity=0.152 Sum_probs=33.6
Q ss_pred EEEEEEecCCCcEEEEeceeecc-cccHHHHHHHHHHHHHHHHHHcCCceEEEEee
Q 038317 15 GLGVVIRDDKDNCIVAAIISYRI-FTNVAMAEAAAIKWGMQVALKTGLVSALLESD 69 (127)
Q Consensus 15 g~G~vi~~~~g~~~~~~~~~~~~-~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sD 69 (127)
-+|.||-+ +|+++..+...... .....+||..||..+.+..-...+...++++.
T Consensus 33 pVGAVIV~-~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~~~l~g~tlYvT 87 (164)
T 1wkq_A 33 PFGAVIVK-DGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTS 87 (164)
T ss_dssp SCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSSCTTEEEEEE
T ss_pred CEEEEEEE-CCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCCCCcCceEEEEe
Confidence 36666664 68877554432222 22245899999998876544445566677766
No 27
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=83.26 E-value=1.2 Score=29.01 Aligned_cols=42 Identities=12% Similarity=0.056 Sum_probs=26.8
Q ss_pred eEEEEEEecCCCcEEEEeceeec-ccccHHHHHHHHHHHHHHHH
Q 038317 14 AGLGVVIRDDKDNCIVAAIISYR-IFTNVAMAEAAAIKWGMQVA 56 (127)
Q Consensus 14 ~g~G~vi~~~~g~~~~~~~~~~~-~~~~~~~AE~~Al~~al~~a 56 (127)
.-+|+||-+ +|+++..+....+ ......+||..||..+.+..
T Consensus 46 ~pVGAVIV~-~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~ 88 (189)
T 3dh1_A 46 VPVGCLMVY-NNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWC 88 (189)
T ss_dssp CCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred CCEEEEEEE-CCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHH
Confidence 346777765 6887765543211 12334599999999987754
No 28
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=82.72 E-value=0.21 Score=36.75 Aligned_cols=54 Identities=13% Similarity=-0.117 Sum_probs=38.2
Q ss_pred cEEEEeceeecc---cccHHHHHHHHHHHHHHHHHHc-CCceEEEEeehHHHHHHHhcC
Q 038317 26 NCIVAAIISYRI---FTNVAMAEAAAIKWGMQVALKT-GLVSALLESDCLEVVQIVNNR 80 (127)
Q Consensus 26 ~~~~~~~~~~~~---~~~~~~AE~~Al~~al~~a~~~-~~~~v~i~sDs~~vi~~~~~~ 80 (127)
..+...++.+.. ..+..+.|+.|+..|++..... --+++.|.||+. +...+++.
T Consensus 371 ~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~-~~~~l~~~ 428 (455)
T 1rw3_A 371 RPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA-VEALVKQP 428 (455)
T ss_dssp CCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC-TTTTSSST
T ss_pred EEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh-HHHHhCCC
Confidence 345555554433 2356689999999999888664 337999999997 66666654
No 29
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=82.60 E-value=2.5 Score=27.65 Aligned_cols=41 Identities=15% Similarity=0.020 Sum_probs=27.8
Q ss_pred EEEEEecCC-CcEEEEeceeecc-cccHHHHHHHHHHHHHHHH
Q 038317 16 LGVVIRDDK-DNCIVAAIISYRI-FTNVAMAEAAAIKWGMQVA 56 (127)
Q Consensus 16 ~G~vi~~~~-g~~~~~~~~~~~~-~~~~~~AE~~Al~~al~~a 56 (127)
+|+||-+.+ |+++..+....+. .....+||..||..|-+..
T Consensus 50 vGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~a~~~~ 92 (197)
T 2g84_A 50 FAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKL 92 (197)
T ss_dssp CEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHHHHHHc
Confidence 588888766 9888765542221 2334599999999887653
No 30
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=82.17 E-value=1 Score=28.67 Aligned_cols=54 Identities=22% Similarity=0.129 Sum_probs=31.7
Q ss_pred eEEEEEEecCCCcEEEEeceeecc-cccHHHHHHHHHHHHHHHHHHcCCceEEEEe
Q 038317 14 AGLGVVIRDDKDNCIVAAIISYRI-FTNVAMAEAAAIKWGMQVALKTGLVSALLES 68 (127)
Q Consensus 14 ~g~G~vi~~~~g~~~~~~~~~~~~-~~~~~~AE~~Al~~al~~a~~~~~~~v~i~s 68 (127)
.-+|.||.+ +|+++..+...... .....+||..||..|.+..-...+....+|+
T Consensus 29 ~pVGAviV~-~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~~~~~~l~~~tlYv 83 (168)
T 1z3a_A 29 VPVGAVLVH-NNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYV 83 (168)
T ss_dssp CCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTCEEEE
T ss_pred CcEEEEEEE-CCEEEEEEEcccccCCCcchhHHHHHHHHHHHHcCCCcccccEEEE
Confidence 357777774 78877544432211 2223599999999887654333344445553
No 31
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=80.64 E-value=1.5 Score=27.07 Aligned_cols=55 Identities=15% Similarity=0.033 Sum_probs=38.0
Q ss_pred eEEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHHHcCCceEEEEee
Q 038317 14 AGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTGLVSALLESD 69 (127)
Q Consensus 14 ~g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sD 69 (127)
-..|.+++..+|+++.+...-.......+.||-.|+..|+..- ...+..|.+-+|
T Consensus 31 f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Av~~G-~~~i~aiav~~~ 85 (138)
T 3r2n_A 31 FPVGVAGFVNDGRLITGVNVENASYGLALCAECSMISALYATG-GGRLVAVYCVDG 85 (138)
T ss_dssp CCCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEECT
T ss_pred CcEEEEEEeCCCcEEEEEcccccCCCCCcCHHHHHHHHHHHcC-CCceEEEEEEcC
Confidence 3578888889999887666444333446799999999987542 334566666654
No 32
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=80.36 E-value=1.6 Score=27.45 Aligned_cols=55 Identities=13% Similarity=-0.060 Sum_probs=39.2
Q ss_pred eEEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHHHcCCceEEEEee
Q 038317 14 AGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTGLVSALLESD 69 (127)
Q Consensus 14 ~g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sD 69 (127)
-..|..++..+|+++.+...-.......+-||-.|+..|+.. -...+..|.+-+|
T Consensus 46 F~VGAAll~~dG~i~tG~NvEnasy~~t~CAEr~Ai~~Avs~-G~~~i~aiavv~~ 100 (150)
T 3mpz_A 46 FPVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSG-GGGRLVALSCVGP 100 (150)
T ss_dssp CCCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEECT
T ss_pred CCEEEEEEeCCCCEEEEEecccccCCccccHHHHHHHHHHHc-CCCceEEEEEEcC
Confidence 357888899999998776654444445678999999988864 2335566777655
No 33
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=79.42 E-value=2.5 Score=28.89 Aligned_cols=91 Identities=10% Similarity=0.061 Sum_probs=56.5
Q ss_pred eeEEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHHHcCCceEEEEeehHHHHHHHhcCCCCcchHHHHHH
Q 038317 13 VAGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTGLVSALLESDCLEVVQIVNNRCSSMVEISWMIS 92 (127)
Q Consensus 13 ~~g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sDs~~vi~~~~~~~~~~~~~~~~~~ 92 (127)
+.-+|+|. |.+|+|- ....++ ...-..+-+.++...++++.++|++.|++|.-|..- -..+..++..++.
T Consensus 25 P~HVAiIM-DGN~RwA--k~rgl~-r~~GH~~G~~~~~~iv~~c~~lGI~~lTlYaFStEN------wkRp~~EV~~Lm~ 94 (256)
T 4h8e_A 25 PEHIAIIM-DGNGRWA--KKRKMP-RIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTEN------WSRPESEVNYIMN 94 (256)
T ss_dssp CSEEEEEC-CCHHHHH--HHTTCC-HHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETTG------GGSCHHHHHHHHH
T ss_pred CCEEEEEc-CCCHHHH--HHCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEchhh------hCCCHHHHHHHHH
Confidence 34556554 7777663 222343 235668889999999999999999999999998532 1122334554443
Q ss_pred HHHHHh----hc--CCcEEEEEecCCc
Q 038317 93 EILEMN----NS--FQNFRAQHTATIN 113 (127)
Q Consensus 93 ~i~~l~----~~--~~~~~~~~i~r~~ 113 (127)
-+...+ .. -..+++++|.+..
T Consensus 95 L~~~~l~~~~~~l~~~~vrvr~iGd~~ 121 (256)
T 4h8e_A 95 LPVNFLKTFLPELIEKNVKVETIGFTD 121 (256)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEESCGG
T ss_pred HHHHHHHHHHHHHHHcCeEEEEecCcc
Confidence 333222 11 2457888887644
No 34
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=78.93 E-value=4.8 Score=29.36 Aligned_cols=66 Identities=5% Similarity=-0.204 Sum_probs=42.0
Q ss_pred eEEEEEEecCCCcEEEEeceeecccccHHHHHHHH-HHHHHHHHHHc--CC--ceEEEEeehHHHHHHHhc
Q 038317 14 AGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAA-IKWGMQVALKT--GL--VSALLESDCLEVVQIVNN 79 (127)
Q Consensus 14 ~g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~A-l~~al~~a~~~--~~--~~v~i~sDs~~vi~~~~~ 79 (127)
+.+|.++..+.|....++.-.-.......+-|.+| ++.||+.-.-. |- ..+++.||.+.+....+.
T Consensus 335 g~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~~~~~~~~~~ 405 (428)
T 2zd1_B 335 GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEY 405 (428)
T ss_dssp TEEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccHHHHHHHHHhc
Confidence 46788888777665444433322233455777777 99999765443 43 567889999876655443
No 35
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=78.70 E-value=2.1 Score=26.51 Aligned_cols=54 Identities=17% Similarity=0.040 Sum_probs=37.0
Q ss_pred EEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHHHcCCceEEEEee
Q 038317 15 GLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTGLVSALLESD 69 (127)
Q Consensus 15 g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sD 69 (127)
.+|.+++..+|+++.+...-.......+.||-.|+..+...- ...+..+.+.+|
T Consensus 24 ~VGAAl~~~dG~i~~G~NvEnas~~~~lcAEr~Ai~~a~~~G-~~~~~~~~v~~~ 77 (142)
T 3b8f_A 24 GGAAAIRVEDGTIYTSVAPDVINASTELCMETGAILEAHKFQ-KKVTHSICLARE 77 (142)
T ss_dssp EEEEEEEETTSCEEEECCCCCSSGGGCCCTTHHHHHHHHHHT-CCEEEEEEEEES
T ss_pred CEEEEEEeCCCcEEEEECcccccCCcccCHHHHHHHHHHHCC-CCcEEEEEEEec
Confidence 788999988999887655444434456799999999988641 123355666654
No 36
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=75.03 E-value=4.2 Score=25.08 Aligned_cols=56 Identities=7% Similarity=0.091 Sum_probs=40.3
Q ss_pred eEEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHHHc--CCceEEEEeeh
Q 038317 14 AGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKT--GLVSALLESDC 70 (127)
Q Consensus 14 ~g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~--~~~~v~i~sDs 70 (127)
-..|..++..+|+++.+...-.......+-||-.|+..++..- .. .+..|.+-+|.
T Consensus 32 F~VGAAll~~dG~iytG~NVEnasy~~t~CAEr~Ai~~Avs~G-~~~~~i~aiavv~~~ 89 (138)
T 3dmo_A 32 FKVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSALAAG-YRPGEFAAIAVVGET 89 (138)
T ss_dssp CCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCTTCEEEEEEEESC
T ss_pred CCEEEEEEeCCCCEEEEEeecccccccccCHHHHHHHHHHHcC-CCcccEEEEEEEcCC
Confidence 3578889999999988777544444456789999999887531 22 46677787775
No 37
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=72.06 E-value=10 Score=23.90 Aligned_cols=53 Identities=11% Similarity=0.052 Sum_probs=35.2
Q ss_pred eEEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHHHcCCceEEEEee
Q 038317 14 AGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTGLVSALLESD 69 (127)
Q Consensus 14 ~g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sD 69 (127)
-..|..++..+|+++.+...- .++..+-||-.|+..|+.. -...+..+.+-++
T Consensus 51 f~VGAAll~~dG~i~tG~NVE--n~~~~lCAEr~Ai~~Avs~-G~~~~~ai~vv~~ 103 (158)
T 3oj6_A 51 YSVASAAISDDGRVFSGVNVY--HFNGGPCAELVVLGVAAAA-GATKLTHIVAIAN 103 (158)
T ss_dssp SCEEEEEEETTSCEEEEECCC--CTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEET
T ss_pred CcEEEEEEeCCCCEEEEEccc--cCCccccHHHHHHHHHHHh-CCCceEEEEEEeC
Confidence 358999999999988766642 2444568999999888742 1123445555554
No 38
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=71.78 E-value=2.4 Score=26.75 Aligned_cols=41 Identities=5% Similarity=-0.077 Sum_probs=27.3
Q ss_pred eEEEEEEe-cCCCcEEEEeceeecc-cccHHHHHHHHHHHHHH
Q 038317 14 AGLGVVIR-DDKDNCIVAAIISYRI-FTNVAMAEAAAIKWGMQ 54 (127)
Q Consensus 14 ~g~G~vi~-~~~g~~~~~~~~~~~~-~~~~~~AE~~Al~~al~ 54 (127)
.-+|.||. +.+|+++..+...... .....+||..||..+.+
T Consensus 34 ~pVGAviVd~~~g~Ii~~G~N~~~~~~~~t~HAE~~Ai~~a~~ 76 (161)
T 1p6o_A 34 VPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGR 76 (161)
T ss_dssp CCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHHCS
T ss_pred CCEEEEEEEecCCEEEEEEECCCCCCCCcccCHHHHHHHHHHH
Confidence 45889998 5789888655432211 12246899999998765
No 39
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=69.83 E-value=3.4 Score=26.52 Aligned_cols=52 Identities=17% Similarity=0.088 Sum_probs=30.9
Q ss_pred eeEEEEEEecCCCcEEEEeceeecc-c-----------cc--------HHHHHHHHHHHHHHHHHHcCCceEEEEe
Q 038317 13 VAGLGVVIRDDKDNCIVAAIISYRI-F-----------TN--------VAMAEAAAIKWGMQVALKTGLVSALLES 68 (127)
Q Consensus 13 ~~g~G~vi~~~~g~~~~~~~~~~~~-~-----------~~--------~~~AE~~Al~~al~~a~~~~~~~v~i~s 68 (127)
..-+|.||.+.+|+++..+....+. + .+ ..+||..||..+. ...+...++|+
T Consensus 31 ~~~VGAvIV~~dg~Iia~G~N~~~~~~~d~~~~~~~~~g~p~~~~~~~t~HAE~~AI~~a~----g~~~~g~tlYv 102 (178)
T 2w4l_A 31 NSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHAELNAIMNKN----LTDVKGCSMYV 102 (178)
T ss_dssp SCCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTTTCBCHHHHHHHC--------CCTTCEEEE
T ss_pred CCCEEEEEEecCCEEEEEEECCCCcCccccccccccccCCccccccCCcCCHHHHHHHHhc----CCCccccEEEE
Confidence 3467899998889988655432221 1 22 2699999998863 23344555554
No 40
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=66.22 E-value=26 Score=23.20 Aligned_cols=53 Identities=17% Similarity=0.114 Sum_probs=37.0
Q ss_pred eeecCCCeeEEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHHHcC
Q 038317 6 TVDVEKQVAGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTG 60 (127)
Q Consensus 6 s~~~~~~~~g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~ 60 (127)
-+.+..+.+.=|.+|-|++|.+.......+ ....+..|++-.+.|||.+.+.|
T Consensus 138 v~~~~~g~~~R~tFiIDp~g~Ir~~~~~~~--~~gr~~~EvLr~l~aLQ~~~~~~ 190 (219)
T 3tue_A 138 VLEESQGVAYRGLFIIDPHGMLRQITVNDM--PVGRSVEEVLRLLEAFQFVEKHG 190 (219)
T ss_dssp CEETTTTEECEEEEEECTTSBEEEEEEECT--TCCCCHHHHHHHHHHHHHHHHC-
T ss_pred CcccCCCeeEEEEEEECCCCeEEEEEEecC--CCCCCHHHHHHHHHHhhhHHhcC
Confidence 344555566668889999997765443322 33456789999999999998775
No 41
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=64.35 E-value=28 Score=22.97 Aligned_cols=52 Identities=25% Similarity=0.118 Sum_probs=37.0
Q ss_pred eecCCCeeEEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHHHcC
Q 038317 7 VDVEKQVAGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTG 60 (127)
Q Consensus 7 ~~~~~~~~g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~ 60 (127)
+.+..+.+-=|.+|-|++|.+...... +.....+..|++-++.|||+..+.|
T Consensus 135 ~~~~~g~~~R~tFiID~~G~Ir~~~v~--~~~~grn~dEiLr~l~AlQ~~~~~~ 186 (216)
T 3sbc_A 135 LIEEEGVALRGLFIIDPKGVIRHITIN--DLPVGRNVDEALRLVEAFQWTDKNG 186 (216)
T ss_dssp EETTTTEECEEEEEECTTSBEEEEEEE--CTTBCCCHHHHHHHHHHHHHHHHHC
T ss_pred eeccCCceeeEEEEECCCCeEEEEEEc--CCCCCCCHHHHHHHHHHhhhHhhcC
Confidence 344455556678899999977654433 2233457789999999999998875
No 42
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=62.08 E-value=7.7 Score=27.02 Aligned_cols=58 Identities=10% Similarity=0.037 Sum_probs=41.5
Q ss_pred eeEEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHH-HcCCceEEEEeeh
Q 038317 13 VAGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVAL-KTGLVSALLESDC 70 (127)
Q Consensus 13 ~~g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~-~~~~~~v~i~sDs 70 (127)
....|..++..+|+++.+...-.......+.||-.|+..+...-. ...+..+.+.+|.
T Consensus 208 ~f~VGAAl~~~dG~i~tG~NvEnasy~~tlCAEr~Ai~~av~~G~~~~~i~~i~vv~~~ 266 (294)
T 1ctt_A 208 KSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKA 266 (294)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEECT
T ss_pred CCceEEEEEeCCCCEEEEEeeecCCCCCccCHHHHHHHHHHHcCCCcCCEEEEEEEecC
Confidence 356788888889988877665454455667999999998885311 1346788888875
No 43
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=60.17 E-value=35 Score=22.77 Aligned_cols=89 Identities=12% Similarity=0.059 Sum_probs=51.2
Q ss_pred EEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHHHcCCceEEEEeehHHHHHHHhcCCCCcchHHHHHHHH
Q 038317 15 GLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTGLVSALLESDCLEVVQIVNNRCSSMVEISWMISEI 94 (127)
Q Consensus 15 g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sDs~~vi~~~~~~~~~~~~~~~~~~~i 94 (127)
-+|+ |-|.+|+|-. ...++. ..-..+-..++...++++.++|++.|++|.=|..- -..+..++..++.-+
T Consensus 9 HVAi-IMDGNrRwAk--~rgl~r-~~GH~~G~~~~~~i~~~c~~lGI~~lTlYaFStEN------w~Rp~~EV~~Lm~L~ 78 (225)
T 3ugs_B 9 HLAV-VMDGNRRWAR--AKGFLA-KLGYSQGVKTMQKLMEVCMEENISNLSLFAFSTEN------WKRPKDEIDFIFELL 78 (225)
T ss_dssp EEEE-EECCCC-----------------CHHHHHHHHHHHHHHHTTCCEEEEEEEESGG------GGSCHHHHHHHHHHH
T ss_pred eEEE-eccCcHHHHH--HCCCCH-HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEcccc------cCCCHHHHHHHHHHH
Confidence 4454 4588998844 333543 45778899999999999999999999998766421 112334566555444
Q ss_pred HHHh----h--cCCcEEEEEecCCc
Q 038317 95 LEMN----N--SFQNFRAQHTATIN 113 (127)
Q Consensus 95 ~~l~----~--~~~~~~~~~i~r~~ 113 (127)
...+ . .-..+++++|.+..
T Consensus 79 ~~~l~~~~~~l~~~~vrvr~iGd~~ 103 (225)
T 3ugs_B 79 DRCLDEALEKFEKNNVRLRAIGDLS 103 (225)
T ss_dssp HHHHHHHHHHSTTTTEEEEEESCGG
T ss_pred HHHHHHHHHHHHHCCcEEEEEeChH
Confidence 4322 2 23678999997754
No 44
>3msh_A Hepatitis B virus X-interacting protein; alpha-beta proteins, profilin-like fold, roadblock/LC7 domai superfamily, protein binding; HET: PG4; 1.51A {Homo sapiens} PDB: 3ms6_A*
Probab=58.88 E-value=24 Score=20.41 Aligned_cols=55 Identities=20% Similarity=0.089 Sum_probs=35.1
Q ss_pred CeeEEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHHHcC-----CceEEEEeehHHH
Q 038317 12 QVAGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTG-----LVSALLESDCLEV 73 (127)
Q Consensus 12 ~~~g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~-----~~~v~i~sDs~~v 73 (127)
+.+=.|+++-|..|..+.+.- ..+...|-+...+ .+.|.++. ..-|.+|+|+..+
T Consensus 15 ~pgvvGvlc~D~qGLcLg~~G-----~~s~~~AG~i~~l--a~~AakL~p~~~~~P~I~LEsDs~~~ 74 (99)
T 3msh_A 15 NPSIVGVLCTDSQGLNLGCRG-----TLSDEHAGVISVL--AQQAAKLTSDPTDIPVVCLESDNGNI 74 (99)
T ss_dssp STTEEEEEEECTTCCEEEEEE-----TCCGGGHHHHHHH--HHHHHHTCCCSSCCCCEEEEETTEEE
T ss_pred cCCcEEEEEECCCCCcccccC-----CCCcccchHHHHH--HHHHHhcCCCCCCCCEEEEEeCCceE
Confidence 345679999999998776432 2344444444433 45565553 4589999999744
No 45
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0
Probab=58.82 E-value=4.7 Score=27.32 Aligned_cols=21 Identities=14% Similarity=-0.050 Sum_probs=17.6
Q ss_pred HHHHHHcCCceEEEEeehHHH
Q 038317 53 MQVALKTGLVSALLESDCLEV 73 (127)
Q Consensus 53 l~~a~~~~~~~v~i~sDs~~v 73 (127)
.+.+...+..++.+|||+..+
T Consensus 180 ~~~v~~ip~drlLlETD~P~~ 200 (254)
T 3gg7_A 180 AALIRSMPRDRVLTETDGPFL 200 (254)
T ss_dssp HHHHHHSCGGGEEECCCTTTS
T ss_pred HHHHHHcCCCeEEEeCCCCcc
Confidence 566777899999999999864
No 46
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=55.65 E-value=24 Score=22.66 Aligned_cols=53 Identities=13% Similarity=-0.007 Sum_probs=32.8
Q ss_pred eEEEEEEecCCCcEEEEeceeeccc----------------ccHHHHHHHHHHHHHHHHHHcCCceEEEEee
Q 038317 14 AGLGVVIRDDKDNCIVAAIISYRIF----------------TNVAMAEAAAIKWGMQVALKTGLVSALLESD 69 (127)
Q Consensus 14 ~g~G~vi~~~~g~~~~~~~~~~~~~----------------~~~~~AE~~Al~~al~~a~~~~~~~v~i~sD 69 (127)
.-+|.||.+ +|+++..+....+.. ....+||..||..+.+. ...+...++|+.
T Consensus 61 ~~VGAVIV~-dg~Iia~G~N~~~~~~~~c~d~g~~~~~~~~~~t~HAE~~AI~~A~~~--g~~l~g~tlYvT 129 (184)
T 2hvw_A 61 AYVGAVLVK-NNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKE--GISANNTEIYVT 129 (184)
T ss_dssp CCCEEEEEE-TTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHHHHHH--TCCCTTEEEEEE
T ss_pred CCEEEEEEE-CCEEEEEEECCCcccccccccccccccccccCCccCHHHHHHHHHHHc--CCCceeEEEEEC
Confidence 346667765 688875444332211 12469999999988653 234567777775
No 47
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=55.08 E-value=19 Score=22.29 Aligned_cols=62 Identities=18% Similarity=0.161 Sum_probs=38.6
Q ss_pred eeE-EEEEEecCCCcEEEEeceeecccccHHHHHHHH-HHHHHHHHHHcCC---ceEEEEeehHHHHH
Q 038317 13 VAG-LGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAA-IKWGMQVALKTGL---VSALLESDCLEVVQ 75 (127)
Q Consensus 13 ~~g-~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~A-l~~al~~a~~~~~---~~v~i~sDs~~vi~ 75 (127)
..| .++++.|.+|..+......-. ....+..-+.+ .-.|.+.+.++|+ +.|+.+.|+.++|.
T Consensus 35 v~Gl~aI~ItDrDGVpi~kv~~~~~-~e~~~r~s~lsTf~~A~dQ~sKLglGknksII~~Y~~yqvVq 101 (143)
T 3cpt_A 35 VEGLHAIVVSDRDGVPVIKVANDNA-PEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQ 101 (143)
T ss_dssp STTEEEEEEECTTSCEEEEEECTTS-CGGGGSHHHHHHHHHHHHHHHHHTCCCEEEEEEECSSEEEEE
T ss_pred cCCeEEEEEECCCCcEEEEecCCCC-chhhcccchhhhHHHHHHHHhhcCCCCCceEEEEecCeEEEE
Confidence 345 688999999988765553221 11233333333 5568888888877 66776766655554
No 48
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1}
Probab=42.49 E-value=5.2 Score=28.24 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=18.2
Q ss_pred HHHHHHcCCceEEEEeehHHH
Q 038317 53 MQVALKTGLVSALLESDCLEV 73 (127)
Q Consensus 53 l~~a~~~~~~~v~i~sDs~~v 73 (127)
++.+...+..++.+||||.++
T Consensus 231 ~~~v~~iPldrlLlETDaP~l 251 (325)
T 3ipw_A 231 LNVMKQIPIERLHIETDCPYC 251 (325)
T ss_dssp HHHHTTSCGGGEEECCCTTSC
T ss_pred HHHHHhCCcccEEEeCCCccc
Confidence 467778899999999999976
No 49
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=36.52 E-value=53 Score=22.91 Aligned_cols=64 Identities=14% Similarity=0.052 Sum_probs=40.6
Q ss_pred eeecCCCeeEEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHH-HcCCceEEEEeeh
Q 038317 6 TVDVEKQVAGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVAL-KTGLVSALLESDC 70 (127)
Q Consensus 6 s~~~~~~~~g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~-~~~~~~v~i~sDs 70 (127)
+|.|-++ ...|..++..+|+++.+...-.......+-||-.|+..++..-. ...+..+.+-.|.
T Consensus 206 ayaPYS~-~~vGAAl~t~dG~iytG~nvEnAay~~slcAEr~Al~~av~~G~~~~~i~aiv~v~~~ 270 (298)
T 4eg2_A 206 SHSPYTQ-NFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQAMMMGESFEDIEAAALVESA 270 (298)
T ss_dssp CBCTTTC-CCEEEEEEETTSCEEEEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEECT
T ss_pred ccCCccC-CCeEEEEEeCCCCEEEEEeeeccccCCCCCHHHHHHHHHHHCCCCccCeEEEEEEeCC
Confidence 3444433 46788888889998877664333334456799999998875311 1136677776663
No 50
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=36.47 E-value=18 Score=24.66 Aligned_cols=54 Identities=11% Similarity=0.065 Sum_probs=38.6
Q ss_pred eEEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHHHcCCceEEEEeehH
Q 038317 14 AGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTGLVSALLESDCL 71 (127)
Q Consensus 14 ~g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sDs~ 71 (127)
--+|+|. |.+|+|- ....++. ..-..+-+.++..-++++.++|++.|++|.=|.
T Consensus 19 ~HVAiIM-DGNrRwA--k~rgl~r-~~GH~~G~~~l~~i~~~c~~lGI~~lTlYaFSt 72 (253)
T 3sgv_B 19 RHVAIIM-DGNGRWA--KKQGKIR-AFGHKAGAKSVRRAVSFAANNGIEALTLYAFSS 72 (253)
T ss_dssp SEEEEEE-CCHHHHH--HHTTCCH-HHHHHHHHHHHHHHHHHHHHTTCSEEEEECC--
T ss_pred CEEEEEe-cCcHHHH--HHCCCCH-HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEch
Confidence 4566555 8778763 2233442 456788899999999999999999999996443
No 51
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=35.50 E-value=38 Score=23.56 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=34.0
Q ss_pred eEEEEEEecCCCcEEEEeceeecc--cccHHHHHHHHHHHHHHHHHHcCCceEEE
Q 038317 14 AGLGVVIRDDKDNCIVAAIISYRI--FTNVAMAEAAAIKWGMQVALKTGLVSALL 66 (127)
Q Consensus 14 ~g~G~vi~~~~g~~~~~~~~~~~~--~~~~~~AE~~Al~~al~~a~~~~~~~v~i 66 (127)
-.+|.+++..+|+++.+...-... ..-.+.||-.|+..+... -...+..|.+
T Consensus 71 f~VGAall~~dG~i~~G~NvEnas~~~~~t~CAEr~Ai~~A~~~-G~~~~~~iav 124 (294)
T 1ctt_A 71 FNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLS-GEKALAAITV 124 (294)
T ss_dssp CCCEEEEEETTSCEEEEECBCCTTSCGGGCBCHHHHHHHHHHHT-TCCCEEEEEE
T ss_pred CcEEEEEEeCCCCEEEEEcCCccCccCCCccCHHHHHHHHHHHc-CCCcEEEEEE
Confidence 467889998999988766643322 113569999999988853 2223445554
No 52
>3qb8_A A654L protein; GNAT N-acetyltransferase, acetyltransferase, COA, spermine, spermidine, transferase; HET: COA; 1.50A {Paramecium bursaria chlorella virus 1}
Probab=34.68 E-value=75 Score=19.04 Aligned_cols=33 Identities=6% Similarity=0.056 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHcCCceEEEEeehHHHHHHHhcC
Q 038317 48 AIKWGMQVALKTGLVSALLESDCLEVVQIVNNR 80 (127)
Q Consensus 48 Al~~al~~a~~~~~~~v~i~sDs~~vi~~~~~~ 80 (127)
.+..+++.|.+.|+..+.+.+++...+....+.
T Consensus 128 Ll~~~~~~a~~~g~~~i~l~~~n~~a~~~y~k~ 160 (197)
T 3qb8_A 128 LLKKTIEESSSHGFKYIYGDCTNIISQNMFEKH 160 (197)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHC
Confidence 456678889999999999999888888887764
No 53
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Probab=33.72 E-value=13 Score=25.53 Aligned_cols=20 Identities=20% Similarity=0.052 Sum_probs=15.8
Q ss_pred HHHHHcCCceEEEEeehHHH
Q 038317 54 QVALKTGLVSALLESDCLEV 73 (127)
Q Consensus 54 ~~a~~~~~~~v~i~sDs~~v 73 (127)
+.+...+..++.+|||+..+
T Consensus 194 ~~v~~ip~drlLlETD~P~l 213 (287)
T 3rcm_A 194 PLVGNIPEGRLMLESDAPYL 213 (287)
T ss_dssp HHHTTSCTTSEEECCCTTSC
T ss_pred HHHHhcCCccEEEeccCCcc
Confidence 44555689999999999864
No 54
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=31.10 E-value=85 Score=18.56 Aligned_cols=50 Identities=16% Similarity=0.106 Sum_probs=31.4
Q ss_pred EEEecCCCcEEEEecee---e--cccccHHHHHHHHHHHHHHHHHHcCCceEEEEe
Q 038317 18 VVIRDDKDNCIVAAIIS---Y--RIFTNVAMAEAAAIKWGMQVALKTGLVSALLES 68 (127)
Q Consensus 18 ~vi~~~~g~~~~~~~~~---~--~~~~~~~~AE~~Al~~al~~a~~~~~~~v~i~s 68 (127)
+.+.|..|..+...+.. + ..-+++..|.. |...+.+.+.++|++.|.|.-
T Consensus 20 vtiTD~~G~~i~~~S~G~~gfKg~rk~tp~AA~~-aa~~~~~~~~~~Gi~~v~v~v 74 (117)
T 3r8n_K 20 VTITDRQGNALGWATAGGSGFRGSRKSTPFAAQV-AAERCADAVKEYGIKNLEVMV 74 (117)
T ss_dssp EEEECTTSCCSEEEETGGGSCCGGGGSSHHHHHH-HHHHHHHHHTTSCCCEEEEEE
T ss_pred EEEEcCCCCEEEEEcCCccccCCCccCCHHHHHH-HHHHHHHHHHHhCCcEEEEEE
Confidence 35668888755443321 1 12345555544 446677888899999999876
No 55
>1kn6_A Prohormone convertase 1; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Mus musculus} SCOP: d.58.3.3
Probab=30.23 E-value=50 Score=18.59 Aligned_cols=23 Identities=26% Similarity=0.141 Sum_probs=16.0
Q ss_pred cCCcEEEEEecCCccHHHHHHHHh
Q 038317 100 SFQNFRAQHTATINNSAAHALRFK 123 (127)
Q Consensus 100 ~~~~~~~~~i~r~~N~~Ad~LA~~ 123 (127)
+|.+--..+|+ .++..||.||+.
T Consensus 10 ~~tn~waV~i~-~g~~~A~~iA~k 32 (90)
T 1kn6_A 10 QFVNEWAAEIP-GGQEAASAIAEE 32 (90)
T ss_dssp -CCCCEEEECS-STHHHHHHHHHH
T ss_pred ccceeEEEEcc-CcHHHHHHHHHH
Confidence 45555567774 557899999974
No 56
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=29.69 E-value=1.2e+02 Score=20.03 Aligned_cols=67 Identities=13% Similarity=0.052 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCceEEEEeehHHHHHHHhcCCCCcchHHHHHHHHHHHhh----cCCcEEEEEecCCc
Q 038317 41 VAMAEAAAIKWGMQVALKTGLVSALLESDCLEVVQIVNNRCSSMVEISWMISEILEMNN----SFQNFRAQHTATIN 113 (127)
Q Consensus 41 ~~~AE~~Al~~al~~a~~~~~~~v~i~sDs~~vi~~~~~~~~~~~~~~~~~~~i~~l~~----~~~~~~~~~i~r~~ 113 (127)
-..+-+.++..-++++.+.|++.|++|.=|.... ..+..++..+.+-+...+. .-..+++.+|.+..
T Consensus 28 GH~~G~~~l~~i~~~c~~~GI~~lTlYaFSteN~------kRp~~Ev~~Lm~l~~~~l~~~~~~~~~vrv~~iG~~~ 98 (227)
T 2vg0_A 28 GYRMGAAKIAEMLRWCHEAGIELATVYLLSTENL------QRDPDELAALIEIITDVVEEICAPANHWSVRTVGDLG 98 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEEEEEEEETGGG------GSCHHHHHHHHHHHHHHHHHHTCTTTCCEEEEESCGG
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeeccccc------CCCHHHHHHHHHHHHHHHHHHhccccCeEEEecCChh
Confidence 4467788999999999999999999998653211 1122345555444443322 23568888887643
No 57
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.50A {Saccharomyces cerevisiae}
Probab=27.97 E-value=23 Score=25.77 Aligned_cols=20 Identities=25% Similarity=0.175 Sum_probs=17.6
Q ss_pred HHHHHHcCCceEEEEeehHH
Q 038317 53 MQVALKTGLVSALLESDCLE 72 (127)
Q Consensus 53 l~~a~~~~~~~v~i~sDs~~ 72 (127)
++.+......++.+|||+..
T Consensus 287 ~e~v~~iPldrLLlETDaP~ 306 (401)
T 3e2v_A 287 LAVVKQIPTERLLLETDAPW 306 (401)
T ss_dssp HHHHHTSCGGGEEECCCTTS
T ss_pred HHHHHhCCchhEEEecCCCC
Confidence 57788889999999999994
No 58
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=27.22 E-value=1.1e+02 Score=18.48 Aligned_cols=50 Identities=18% Similarity=-0.038 Sum_probs=30.9
Q ss_pred EEecCCCcEEEEeceeec-----ccccHHHHHHHHHHHHHHHHHHcCCceEEEEee
Q 038317 19 VIRDDKDNCIVAAIISYR-----IFTNVAMAEAAAIKWGMQVALKTGLVSALLESD 69 (127)
Q Consensus 19 vi~~~~g~~~~~~~~~~~-----~~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sD 69 (127)
-+.|..|..+...+.... .-+++..|. +|...+.+.+.++|+..|.|.--
T Consensus 31 tiTd~~G~~~~~~SaG~~gfKg~rk~tp~AA~-~aa~~~~~~~~~~Gi~~v~V~vk 85 (129)
T 2vqe_K 31 TITDPDGNPITWSSGGVIGYKGSRKGTPYAAQ-LAALDAAKKAMAYGMQSVDVIVR 85 (129)
T ss_dssp EEECTTSCEEEECCTTTTTCCSGGGGSHHHHH-HHHHHHHHHHHTTTCCEEEEEEE
T ss_pred EEEcCCCCEEEEEeccceeEcCCCcCCHHHHH-HHHHHHHHHHHHhCCeEEEEEEE
Confidence 566888887665553211 123444333 34456777788999999988763
No 59
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.03 E-value=1.1e+02 Score=18.65 Aligned_cols=50 Identities=20% Similarity=0.050 Sum_probs=31.6
Q ss_pred EEecCCCc-EEEEeceeec-----ccccHHHHHHHHHHHHHHHHHHcCCceEEEEee
Q 038317 19 VIRDDKDN-CIVAAIISYR-----IFTNVAMAEAAAIKWGMQVALKTGLVSALLESD 69 (127)
Q Consensus 19 vi~~~~g~-~~~~~~~~~~-----~~~~~~~AE~~Al~~al~~a~~~~~~~v~i~sD 69 (127)
.+.|..|. .+...+.... .-+++..|...| ..+.+.+.++|++.|.|.--
T Consensus 29 tiTD~~G~~~i~~~S~G~~gfkg~~ksTp~AA~~aa-~~~~~~a~e~Gi~~v~V~vk 84 (137)
T 3j20_M 29 HITDITGAETISRWSGGMVVKADRDEPSPYAAMLAA-RRAAEEALEKGIVGVHIRVR 84 (137)
T ss_dssp EEEESSSCSEEEEEEGGGTCSCTTTSSSHHHHHHHH-HHHHHHHHHHTEEEEEEEEE
T ss_pred EEEcCCCCEEEEEEccceeeecCCccCCHHHHHHHH-HHHHHHHHHcCCeEEEEEEE
Confidence 45688884 5554443221 234566555555 66778889999999988643
No 60
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=25.66 E-value=42 Score=21.51 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEe
Q 038317 42 AMAEAAAIKWGMQVALKTGLVSALLES 68 (127)
Q Consensus 42 ~~AE~~Al~~al~~a~~~~~~~v~i~s 68 (127)
.+||..||..|-+.- ..+..-++|+
T Consensus 103 ~HAE~~AI~~a~~~g--~~~~g~tLYv 127 (193)
T 1vq2_A 103 IHAELNAILFAAENG--SSIEGATMYV 127 (193)
T ss_dssp BCHHHHHHHHHHHHT--CCCTTCEEEE
T ss_pred CCHHHHHHHHHHhcC--CCcCCeEEEE
Confidence 489999999876432 2334445554
No 61
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=25.53 E-value=48 Score=13.96 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCC.
Q 038317 41 VAMAEAAAIKWGMQVALKTGL. 61 (127)
Q Consensus 41 ~~~AE~~Al~~al~~a~~~~~. 61 (127)
+..||.+.+-..-++++..|+
T Consensus 5 p~IAe~M~~~~Vk~fvR~~gi. 25 (25)
T 3ewt_E 5 TTIAGVMTLSQVKGFVRKNGVx 26 (26)
T ss_pred hHHHHHHhHHHHHHHHHHcCC.
Confidence 446899999888888888764
No 62
>2g3a_A Acetyltransferase; structural genomics, PSI, protein structu initiative, midwest center for structural genomics, MCSG; 1.90A {Agrobacterium tumefaciens str} SCOP: d.108.1.1
Probab=24.02 E-value=1.1e+02 Score=17.47 Aligned_cols=32 Identities=13% Similarity=0.176 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCCceEEEEeehHHHHHHHhc
Q 038317 48 AIKWGMQVALKTGLVSALLESDCLEVVQIVNN 79 (127)
Q Consensus 48 Al~~al~~a~~~~~~~v~i~sDs~~vi~~~~~ 79 (127)
.+...++.+.+.|...+.+.+++...+....+
T Consensus 96 ll~~~~~~~~~~g~~~i~l~~~n~~a~~~y~k 127 (152)
T 2g3a_A 96 LLAMAEEEARKRGCMGAYIDTMNPDALRTYER 127 (152)
T ss_dssp HHHHHHHHHHHTTCCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEEecCccHHHHHHH
Confidence 34556788888999999999986555655554
No 63
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=23.78 E-value=1.4e+02 Score=18.58 Aligned_cols=49 Identities=8% Similarity=-0.096 Sum_probs=29.7
Q ss_pred EEecCCCc-EEEEeceeec-----ccccHHHHHHHHHHHHHHHHHHcCCceEEEEe
Q 038317 19 VIRDDKDN-CIVAAIISYR-----IFTNVAMAEAAAIKWGMQVALKTGLVSALLES 68 (127)
Q Consensus 19 vi~~~~g~-~~~~~~~~~~-----~~~~~~~AE~~Al~~al~~a~~~~~~~v~i~s 68 (127)
.+.|..|. .+...+.... .-+++..|. +|...+.+.+.++|++.|.|.-
T Consensus 43 tiTD~~G~~~~~~ssgg~~~k~~r~ksTpyAAq-~aa~~~a~~a~e~Gi~~v~V~v 97 (151)
T 2xzm_K 43 HVTDLSGRETLVRVTGGMKVKADREESSPYAAM-QAAIDVVNRCKELKINALHIKL 97 (151)
T ss_dssp EEECTTCCSEEEECCHHHHCSSGGGGSCHHHHH-HHHHHHHHHHHHHTCCEEEEEE
T ss_pred EEECCCCCEEEEEecCcceEeCCCCcCCHHHHH-HHHHHHHHHHHHcCCeEEEEEE
Confidence 45677776 4443332221 134455554 4455677888899999988875
No 64
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=23.69 E-value=1.7e+02 Score=19.50 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=29.8
Q ss_pred EEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHHHcC
Q 038317 17 GVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTG 60 (127)
Q Consensus 17 G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~ 60 (127)
+.++-|++|.++.......+ ...+..|++..+.+|+...+.+
T Consensus 126 ~~fIID~dG~I~~~~~~~~~--~gr~~~Ellr~I~alq~~~~~~ 167 (249)
T 3a2v_A 126 GVFIVDARGVIRTMLYYPME--LGRLVDEILRIVKALKLGDSLK 167 (249)
T ss_dssp EEEEECTTSBEEEEEEECTT--BCCCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEECCCCeEEEEEecCCc--ccchhHHHHHHHHHHHhccccC
Confidence 56788999988765543222 1235679999999999887664
No 65
>1eoq_A GAG polyprotein capsid protein P27; virus/viral protein; NMR {Rous sarcoma virus - prague C} SCOP: a.28.3.1
Probab=23.37 E-value=54 Score=18.78 Aligned_cols=27 Identities=11% Similarity=0.113 Sum_probs=18.3
Q ss_pred eehHHHHHHHhcCCCCcchHHHHHHHH
Q 038317 68 SDCLEVVQIVNNRCSSMVEISWMISEI 94 (127)
Q Consensus 68 sDs~~vi~~~~~~~~~~~~~~~~~~~i 94 (127)
.||+.+++.+.+...+..++..++.++
T Consensus 46 PdCk~iLkal~g~~~tl~em~~yi~~~ 72 (96)
T 1eoq_A 46 PDIQQLIRTAPSTLTTPGEIIKYVLDR 72 (96)
T ss_dssp HHHHHHHHHCCSCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHH
Confidence 789999999877655544554444444
No 66
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}
Probab=21.29 E-value=37 Score=23.08 Aligned_cols=21 Identities=14% Similarity=0.109 Sum_probs=16.9
Q ss_pred HHHHHHcCCceEEEEeehHHH
Q 038317 53 MQVALKTGLVSALLESDCLEV 73 (127)
Q Consensus 53 l~~a~~~~~~~v~i~sDs~~v 73 (127)
++++...+..++.+|||+..+
T Consensus 203 ~~~~~~~p~drlLleTD~P~~ 223 (301)
T 2xio_A 203 LEVLKSIPSEKLMIETDAPWC 223 (301)
T ss_dssp HHHHHTSCGGGEEECCCTTSC
T ss_pred HHHHHhCChHHEEEecCCCcc
Confidence 356667789999999999853
No 67
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=21.23 E-value=77 Score=22.45 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=23.8
Q ss_pred eEEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHH
Q 038317 14 AGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGM 53 (127)
Q Consensus 14 ~g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al 53 (127)
.-+|+||-+ +|+++..+... .....+||..|+..|.
T Consensus 36 ~~vGaviv~-~g~ii~~g~n~---~~~~~HAE~~Ai~~a~ 71 (360)
T 2hxv_A 36 PPVGAVVVK-DGRIIAEGFHP---YFGGPHAERMAIESAR 71 (360)
T ss_dssp CCCEEEEEE-TTEEEEEEECC---STTSCCHHHHHHHHHH
T ss_pred CCEEEEEEE-CCEEEEEEeCC---CCCCcCHHHHHHHHHH
Confidence 346777765 68777655432 2335689999999883
No 68
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=21.20 E-value=1.7e+02 Score=18.75 Aligned_cols=42 Identities=10% Similarity=0.045 Sum_probs=30.3
Q ss_pred EEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHHHcC
Q 038317 17 GVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTG 60 (127)
Q Consensus 17 G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~ 60 (127)
+.++-|++|.+......... ...+..|++..+.+|+...+.+
T Consensus 130 ~~flID~~G~I~~~~~~~~~--~g~~~~ell~~i~~lq~~~~~~ 171 (220)
T 1xcc_A 130 CLFFISPEKKIKATVLYPAT--TGRNAHEILRVLKSLQLTYTTP 171 (220)
T ss_dssp EEEEECTTSBEEEEEEECTT--BCCCHHHHHHHHHHHHHHHHSS
T ss_pred eEEEECCCCEEEEEEecCCC--CCCCHHHHHHHHHHHHhhhcCC
Confidence 66788999988775543321 2235679999999999887764
No 69
>1sn9_A BBAT, tetrameric beta-BETA-alpha mini-protein; protein design, domain swapping, oligomerization, de novo protein; HET: DBZ; 1.20A {Synthetic} SCOP: k.14.1.1 PDB: 1sna_A* 1sne_A* 1xof_B* 1xof_A*
Probab=21.10 E-value=57 Score=13.35 Aligned_cols=9 Identities=22% Similarity=0.050 Sum_probs=6.1
Q ss_pred HHHHHHHhh
Q 038317 116 AAHALRFKI 124 (127)
Q Consensus 116 ~Ad~LA~~a 124 (127)
.||+|||.-
T Consensus 9 fadelakll 17 (26)
T 1sn9_A 9 FADELAKLL 17 (26)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 578887753
No 70
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=21.02 E-value=81 Score=22.47 Aligned_cols=36 Identities=19% Similarity=0.065 Sum_probs=24.1
Q ss_pred eEEEEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHH
Q 038317 14 AGLGVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGM 53 (127)
Q Consensus 14 ~g~G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al 53 (127)
.-+|+||-+ +|+++..+... .....+||..|+..|-
T Consensus 36 ~~vGaviv~-~g~ii~~g~n~---~~~~~HAE~~Ai~~a~ 71 (373)
T 2b3z_A 36 PLVGAVVVK-DGQIVGMGAHL---KYGEAHAEVHAIHMAG 71 (373)
T ss_dssp CCCEEEEES-SSSEEEEEECC---STTSCCHHHHHHHHHG
T ss_pred CcEEEEEEE-CCEEEEEEeCC---CCCCcCHHHHHHHHhh
Confidence 356777775 68887655432 2335689999998864
No 71
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=20.93 E-value=1.9e+02 Score=19.13 Aligned_cols=42 Identities=21% Similarity=0.181 Sum_probs=30.0
Q ss_pred EEEEecCCCcEEEEeceeecccccHHHHHHHHHHHHHHHHHHcC
Q 038317 17 GVVIRDDKDNCIVAAIISYRIFTNVAMAEAAAIKWGMQVALKTG 60 (127)
Q Consensus 17 G~vi~~~~g~~~~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~ 60 (127)
+.++-|.+|.++....... .......|++.++.+|+...+.+
T Consensus 184 ~tflID~~G~I~~~~~~~~--~~~~~~~eil~~L~alq~~~~~~ 225 (254)
T 3tjj_A 184 GLFIIDDKGILRQITLNDL--PVGRSVDETLRLVQAFQYTDKHG 225 (254)
T ss_dssp EEEEECTTSBEEEEEEECT--TCCCCHHHHHHHHHHHHHHHHHC
T ss_pred eEEEECCCCeEEEEEecCC--CCCCCHHHHHHHHHhhccccccC
Confidence 5688899998876544322 22345679999999999887764
No 72
>2d4p_A Hypothetical protein TTHA1254; structural genomics, NPPSFA, national project on protein STR and functional analyses; 1.70A {Thermus thermophilus} SCOP: d.108.1.1 PDB: 2d4o_A
Probab=20.19 E-value=83 Score=19.24 Aligned_cols=23 Identities=17% Similarity=0.171 Sum_probs=19.0
Q ss_pred HHHHHHHHHHcCCceEEEEeehH
Q 038317 49 IKWGMQVALKTGLVSALLESDCL 71 (127)
Q Consensus 49 l~~al~~a~~~~~~~v~i~sDs~ 71 (127)
+-.++++|.+.|+.+|.+.+|..
T Consensus 80 l~~a~~~a~~~G~~rv~L~~~~~ 102 (141)
T 2d4p_A 80 LRAVVKSAYDAGVYEVALHLDPE 102 (141)
T ss_dssp HHHHHHHHHHTTCSEEEECCCTT
T ss_pred HHHHHHHHHHCCCCEEEEEeccc
Confidence 44578999999999999977764
Done!