BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038320
(467 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 123/349 (35%), Positives = 173/349 (49%), Gaps = 22/349 (6%)
Query: 97 NGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFL-GSLEKLRYLNLSGASFAGN 155
N ++ Q G I P L LK L YL L+ N F G IP+FL G+ + L L+LSG F G
Sbjct: 253 NISSNQFVGPIPP--LPLKSLQYLSLAENKFTG-EIPDFLSGACDTLTGLDLSGNHFYGA 309
Query: 156 IPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATN 215
+PP FG+ S L+ L L++ +S D L ++ L+ L+L + S G TN
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDT--LLKMRGLKVLDLSFNEFS--GELPESLTN 365
Query: 216 MLPSLSELHLPACGLFE--FPPXXXXXXXXXXXXXXXXXXXXXXIPQWLLNISKLAHLDL 273
+ SL L L + P IP L N S+L L L
Sbjct: 366 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425
Query: 274 SANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIE 333
S N L G IP + +++ LR+L L N ++ G+IP++L + L L L NDL GEI
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLETLILDFNDLTGEI-- 482
Query: 334 FVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSS 393
LS C N L + L N L G +P +G+LENL IL+L N F G+IP +G+ S
Sbjct: 483 -PSGLSNCTN--LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539
Query: 394 LRELYLHNNLMDGTIPKSLGKLSHLVVLD-ISGNPWI-----GLVTEVH 436
L L L+ NL +GTIP ++ K S + + I+G ++ G+ E H
Sbjct: 540 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 588
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 127/424 (29%), Positives = 180/424 (42%), Gaps = 66/424 (15%)
Query: 83 LKLRSPEIPD-SFTDNGTTYQLEGEISPSVLDLK-HLNYLDLSLNNFRGSRIPNFLGSLE 140
LK+R ++ D SF + GE+ S+ +L L LDLS NNF G +PN + +
Sbjct: 340 LKMRGLKVLDLSFN------EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393
Query: 141 K-LRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQ-YLN- 197
L+ L L F G IPP+ N S L L L+ Y S + LS+L L+ +LN
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 198 LEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPXXXXXXXXXXXXXXXXXXXXXX 257
LEG Q + +L L L L P
Sbjct: 454 LEG--------EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 258 IPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIP----KDLGS 313
IP+W+ + LA L LS N+ GNIP + SL LDL+ N L G IP K G
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN-LFNGTIPAAMFKQSGK 564
Query: 314 LCNLW----------------DLDLSGNDLDGEII--EFVDRLSK---CA---------- 342
+ + + +GN L+ + I E ++RLS C
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624
Query: 343 ------NSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRE 396
N S+ LD+ N L G++P +G + L IL L N GSIP+ +G+L L
Sbjct: 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 684
Query: 397 LYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEV----HFSKLKNLKELHIAKYS 452
L L +N +DG IP+++ L+ L +D+S N G + E+ F K L + Y
Sbjct: 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP 744
Query: 453 LAPR 456
L PR
Sbjct: 745 L-PR 747
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 132/491 (26%), Positives = 197/491 (40%), Gaps = 116/491 (23%)
Query: 25 RLSTCQSIARCVQNEKEALLKIKASVTDPSGRLSSWTG-EDCCKWEGVICDNSTGKVVQL 83
+ S QS+ R E L+ K + D + L W+ ++ C ++GV C + KV +
Sbjct: 3 QASPSQSLYR----EIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCRDD--KVTSI 55
Query: 84 KLRSPEIPDSFT----------DNGTTYQLEGEISPSVLDLK---HLNYLDLSLNNFRGS 130
L S + F+ + + I+ SV K L LDLS N+ G
Sbjct: 56 DLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGP 115
Query: 131 RIP-NFLGSLEKLRYLNLSGAS--FAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWL 187
LGS L++LN+S + F G + L+SL++LDL+ S ++ V W+
Sbjct: 116 VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISG--ANVVGWV 172
Query: 188 --SRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPXXXXXXXXXX 245
L++L + G +S ++ + C EF
Sbjct: 173 LSDGCGELKHLAISGNKIS----------------GDVDVSRCVNLEF------------ 204
Query: 246 XXXXXXXXXXXXIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIG- 304
IP +L + S L HLD+S N L G+ A + T L+ L++S N +G
Sbjct: 205 -LDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 262
Query: 305 --------------------GQIPKDLGSLCN-LWDLDLSGNDLDGEIIEFVDRLSKCAN 343
G+IP L C+ L LDLSGN G + F S +
Sbjct: 263 IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322
Query: 344 SSLESLDLGQNNLGGFLP-NSLGQLENLKILQLWGNLFRGSIPESIGNLS---------- 392
+L NN G LP ++L ++ LK+L L N F G +PES+ NLS
Sbjct: 323 LALS-----SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377
Query: 393 -----------------SLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEV 435
+L+ELYL NN G IP +L S LV L +S N G +
Sbjct: 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 437
Query: 436 --HFSKLKNLK 444
SKL++LK
Sbjct: 438 LGSLSKLRDLK 448
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 97/205 (47%), Gaps = 37/205 (18%)
Query: 273 LSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIP-KDLGSLCNLWDLDLSGNDLDGEI 331
LS +++ G++ F SL LDLS NSL G LGS L L++S N LD
Sbjct: 84 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--- 139
Query: 332 IEFVDRLSKCAN-SSLESLDLGQNNLGG------FLPNSLGQLE---------------- 368
F ++S +SLE LDL N++ G L + G+L+
Sbjct: 140 --FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS 197
Query: 369 ---NLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISG 425
NL+ L + N F IP +G+ S+L+ L + N + G +++ + L +L+IS
Sbjct: 198 RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256
Query: 426 NPWIGLVTEVHFSKLKNLKELHIAK 450
N ++G + + LK+L+ L +A+
Sbjct: 257 NQFVGPIPPL---PLKSLQYLSLAE 278
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 123/349 (35%), Positives = 173/349 (49%), Gaps = 22/349 (6%)
Query: 97 NGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFL-GSLEKLRYLNLSGASFAGN 155
N ++ Q G I P L LK L YL L+ N F G IP+FL G+ + L L+LSG F G
Sbjct: 250 NISSNQFVGPIPP--LPLKSLQYLSLAENKFTG-EIPDFLSGACDTLTGLDLSGNHFYGA 306
Query: 156 IPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATN 215
+PP FG+ S L+ L L++ +S D L ++ L+ L+L + S G TN
Sbjct: 307 VPPFFGSCSLLESLALSSNNFSGELPMDT--LLKMRGLKVLDLSFNEFS--GELPESLTN 362
Query: 216 MLPSLSELHLPACGLFE--FPPXXXXXXXXXXXXXXXXXXXXXXIPQWLLNISKLAHLDL 273
+ SL L L + P IP L N S+L L L
Sbjct: 363 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 422
Query: 274 SANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIE 333
S N L G IP + +++ LR+L L N ++ G+IP++L + L L L NDL GEI
Sbjct: 423 SFNYLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLETLILDFNDLTGEI-- 479
Query: 334 FVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSS 393
LS C N L + L N L G +P +G+LENL IL+L N F G+IP +G+ S
Sbjct: 480 -PSGLSNCTN--LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 536
Query: 394 LRELYLHNNLMDGTIPKSLGKLSHLVVLD-ISGNPWI-----GLVTEVH 436
L L L+ NL +GTIP ++ K S + + I+G ++ G+ E H
Sbjct: 537 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 585
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 120/399 (30%), Positives = 172/399 (43%), Gaps = 61/399 (15%)
Query: 83 LKLRSPEIPD-SFTDNGTTYQLEGEISPSVLDLK-HLNYLDLSLNNFRGSRIPNFLGSLE 140
LK+R ++ D SF + GE+ S+ +L L LDLS NNF G +PN + +
Sbjct: 337 LKMRGLKVLDLSFN------EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 390
Query: 141 K-LRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQ-YLN- 197
L+ L L F G IPP+ N S L L L+ Y S + LS+L L+ +LN
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 198 LEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPXXXXXXXXXXXXXXXXXXXXXX 257
LEG Q + +L L L L P
Sbjct: 451 LEG--------EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 502
Query: 258 IPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIP----KDLGS 313
IP+W+ + LA L LS N+ GNIP + SL LDL+ N L G IP K G
Sbjct: 503 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN-LFNGTIPAAMFKQSGK 561
Query: 314 LCNLW----------------DLDLSGNDLDGEII--EFVDRLSK---CA---------- 342
+ + + +GN L+ + I E ++RLS C
Sbjct: 562 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 621
Query: 343 ------NSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRE 396
N S+ LD+ N L G++P +G + L IL L N GSIP+ +G+L L
Sbjct: 622 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 681
Query: 397 LYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEV 435
L L +N +DG IP+++ L+ L +D+S N G + E+
Sbjct: 682 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 131/486 (26%), Positives = 195/486 (40%), Gaps = 116/486 (23%)
Query: 30 QSIARCVQNEKEALLKIKASVTDPSGRLSSWTG-EDCCKWEGVICDNSTGKVVQLKLRSP 88
QS+ R E L+ K + D + L W+ ++ C ++GV C + KV + L S
Sbjct: 5 QSLYR----EIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCRDD--KVTSIDLSSK 57
Query: 89 EIPDSFT----------DNGTTYQLEGEISPSVLDLK---HLNYLDLSLNNFRGSRIP-N 134
+ F+ + + I+ SV K L LDLS N+ G
Sbjct: 58 PLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLT 117
Query: 135 FLGSLEKLRYLNLSGAS--FAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWL--SRL 190
LGS L++LN+S + F G + L+SL++LDL+ S ++ V W+
Sbjct: 118 SLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISG--ANVVGWVLSDGC 174
Query: 191 SSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPXXXXXXXXXXXXXXX 250
L++L + G +S ++ + C EF
Sbjct: 175 GELKHLAISGNKIS----------------GDVDVSRCVNLEF-------------LDVS 205
Query: 251 XXXXXXXIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIG------ 304
IP +L + S L HLD+S N L G+ A + T L+ L++S N +G
Sbjct: 206 SNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP 264
Query: 305 ---------------GQIPKDLGSLCN-LWDLDLSGNDLDGEIIEFVDRLSKCANSSLES 348
G+IP L C+ L LDLSGN G + F S + +L
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS- 323
Query: 349 LDLGQNNLGGFLP-NSLGQLENLKILQLWGNLFRGSIPESIGNLS--------------- 392
NN G LP ++L ++ LK+L L N F G +PES+ NLS
Sbjct: 324 ----SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 379
Query: 393 ------------SLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEV--HFS 438
+L+ELYL NN G IP +L S LV L +S N G + S
Sbjct: 380 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 439
Query: 439 KLKNLK 444
KL++LK
Sbjct: 440 KLRDLK 445
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 56/115 (48%), Gaps = 7/115 (6%)
Query: 264 NISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLS 323
N + LD+S N L G IP +M L L+L N I G IP ++G L L LDLS
Sbjct: 627 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND-ISGSIPDEVGDLRGLNILDLS 685
Query: 324 GNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGN 378
N LDG I + + L+ L +DL NNL G +P +GQ E + N
Sbjct: 686 SNKLDGRIPQAMSALTM-----LTEIDLSNNNLSGPIP-EMGQFETFPPAKFLNN 734
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 97/205 (47%), Gaps = 37/205 (18%)
Query: 273 LSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIP-KDLGSLCNLWDLDLSGNDLDGEI 331
LS +++ G++ F SL LDLS NSL G LGS L L++S N LD
Sbjct: 81 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--- 136
Query: 332 IEFVDRLSKCAN-SSLESLDLGQNNLGG------FLPNSLGQLE---------------- 368
F ++S +SLE LDL N++ G L + G+L+
Sbjct: 137 --FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS 194
Query: 369 ---NLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISG 425
NL+ L + N F IP +G+ S+L+ L + N + G +++ + L +L+IS
Sbjct: 195 RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 253
Query: 426 NPWIGLVTEVHFSKLKNLKELHIAK 450
N ++G + + LK+L+ L +A+
Sbjct: 254 NQFVGPIPPL---PLKSLQYLSLAE 275
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 107/381 (28%), Positives = 159/381 (41%), Gaps = 84/381 (22%)
Query: 35 CVQNEKEALLKIKASVTDPSGRLSSW-TGEDCC--KWEGVICDNSTG--KVVQLKLRSPE 89
C +K+ALL+IK + +P+ LSSW DCC W GV+CD T +V L L
Sbjct: 3 CNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 90 IPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDL-SLNNFRGSRIPNFLGSLEKLRYLNLS 148
+P + I S+ +L +LN+L + +NN G IP + L +L YL ++
Sbjct: 62 LPKPY-----------PIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYIT 109
Query: 149 GASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGS 208
+ +G IP + +L LD F Y++L +S L +L + +G +S A
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLD---FSYNALSGTLPPSISSLPNLVGITFDGNRISGA-- 164
Query: 209 SWVQATNMLPSLSELHLPACGLFEFPPXXXXXXXXXXXXXXXXXXXXXXIPQWLLNISKL 268
IP + SKL
Sbjct: 165 -------------------------------------------------IPDSYGSFSKL 175
Query: 269 -AHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDL 327
+ +S N L G IP FAN+ +L +DLS N ++ G GS N + L+ N L
Sbjct: 176 FTSMTISRNRLTGKIPPTFANL-NLAFVDLSRN-MLEGDASVLFGSDKNTQKIHLAKNSL 233
Query: 328 DGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPES 387
++ + LSK +L LDL N + G LP L QL+ L L + N G IP+
Sbjct: 234 AFDLGKV--GLSK----NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287
Query: 388 IGNLSSLR-ELYLHNNLMDGT 407
GNL Y +N + G+
Sbjct: 288 -GNLQRFDVSAYANNKCLCGS 307
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 98/191 (51%), Gaps = 10/191 (5%)
Query: 267 KLAHLDLSANNLQGN--IPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSG 324
++ +LDLS NL IP + AN+ L L + + + G IP + L L L ++
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 325 NDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSI 384
++ G I +F+ ++ +L +LD N L G LP S+ L NL + GN G+I
Sbjct: 111 TNVSGAIPDFLSQIK-----TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165
Query: 385 PESIGNLSSL-RELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNL 443
P+S G+ S L + + N + G IP + L +L +D+S N G + V F KN
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDAS-VLFGSDKNT 223
Query: 444 KELHIAKYSLA 454
+++H+AK SLA
Sbjct: 224 QKIHLAKNSLA 234
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 34/218 (15%)
Query: 258 IPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNL 317
IP + +++L +L ++ N+ G IPD + + +L LD S N+L G +P + SL NL
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-SGTLPPSISSLPNL 151
Query: 318 WDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWG 377
+ GN + G I + SK S+ + +N L G +P + L NL + L
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKL----FTSMTISRNRLTGKIPPTFANL-NLAFVDLSR 206
Query: 378 NLFRG--------------------SIPESIGNL---SSLRELYLHNNLMDGTIPKSLGK 414
N+ G S+ +G + +L L L NN + GT+P+ L +
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266
Query: 415 LSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYS 452
L L L++S N G + + NL+ ++ Y+
Sbjct: 267 LKFLHSLNVSFNNLCGEIPQG-----GNLQRFDVSAYA 299
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%)
Query: 352 GQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKS 411
G NNL G +P ++ +L L L + G+IP+ + + +L L N + GT+P S
Sbjct: 85 GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144
Query: 412 LGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRLTLVF 461
+ L +LV + GN G + + + S K + I++ L ++ F
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 78/150 (52%), Gaps = 12/150 (8%)
Query: 264 NISKLAHLDLSANNLQ--GNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLD 321
++++L L L N L+ I + M SL++LD+S+NS+ + D +L L+
Sbjct: 346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405
Query: 322 LSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFR 381
+S N L D + +C ++ LDL N + +P + +LE L+ L + N +
Sbjct: 406 MSSNIL-------TDTIFRCLPPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLK 457
Query: 382 GSIPESI-GNLSSLRELYLHNNLMDGTIPK 410
S+P+ I L+SL++++LH N D + P+
Sbjct: 458 -SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 10/150 (6%)
Query: 262 LLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDL-GSLCNLWDL 320
L ++ L +L L+ N LQ F +T+L+EL L EN L +P + L NL L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL--QSLPDGVFDKLTNLTYL 138
Query: 321 DLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLF 380
+L+ N L D+L+ +L LDL N L +L LK L+L+ N
Sbjct: 139 NLAHNQLQSLPKGVFDKLT-----NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Query: 381 RGSIPESI-GNLSSLRELYLHNNLMDGTIP 409
+ S+P+ + L+SL+ ++LH+N D T P
Sbjct: 194 K-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 76/181 (41%), Gaps = 26/181 (14%)
Query: 270 HLDLSANNLQGNIPDAFANMTSLRELDLSENSL--IGGQIPKDLGSLCNLWDLDLSGNDL 327
LDL +N L AF +T LR L L++N L + I K+L +L LW ++ N L
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW---VTDNKL 97
Query: 328 DGEIIEFVDRLSKCAN-------------------SSLESLDLGQNNLGGFLPNSLGQLE 368
I D+L A + L L LG N L +L
Sbjct: 98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157
Query: 369 NLKILQLWGNLFRGSIPE-SIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNP 427
+LK L+L+ N + +PE + L+ L+ L L NN + + L L +L + NP
Sbjct: 158 SLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216
Query: 428 W 428
W
Sbjct: 217 W 217
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 30/120 (25%)
Query: 259 PQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLW 318
P+ +++KL +L L N LQ F +TSL+EL L N L ++P+ G+
Sbjct: 126 PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL--KRVPE--GAF---- 177
Query: 319 DLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGN 378
D+L++ L++L L N L + LE LK+LQL N
Sbjct: 178 -----------------DKLTE-----LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 79/177 (44%), Gaps = 8/177 (4%)
Query: 273 LSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEII 332
L +N L G AF +T L +LDLS+N+ + P L +L L L L E+
Sbjct: 62 LHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQ-ELG 120
Query: 333 EFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPE-SIGNL 391
+ R ++L+ L L NNL N+ L NL L L GN S+PE + L
Sbjct: 121 PGLFR----GLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI-PSVPEHAFRGL 175
Query: 392 SSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
SL L LH N + P + L L+ L + N L EV L++L+ L +
Sbjct: 176 HSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEV-LVPLRSLQYLRL 231
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%)
Query: 375 LWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTE 434
L GN S + +L L+LH+N + G + L+ L LD+S N + +V
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 435 VHFSKLKNLKELHIAKYSL 453
F L +L LH+ + L
Sbjct: 98 TTFRGLGHLHTLHLDRCGL 116
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 12/148 (8%)
Query: 265 ISKLAHLDLSANNLQGNIPDAF--ANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDL 322
+ +L L L N L+ A NM+SL LD+S NSL + ++ L+L
Sbjct: 376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435
Query: 323 SGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRG 382
S N L G + +C ++ LDL N + +P + L+ L+ L + N +
Sbjct: 436 SSNMLTGSVF-------RCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLK- 486
Query: 383 SIPESIGN-LSSLRELYLHNNLMDGTIP 409
S+P+ + + L+SL+ ++LH+N D T P
Sbjct: 487 SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 110 SVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFA--GNIPPSFGNLSSLQ 167
S + L +LDLS N+F + G+L KL +L LS A F +P + +LS +
Sbjct: 116 SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCI- 174
Query: 168 ILDLNTFYYSSLESDDVE 185
+LDL +++ E++ ++
Sbjct: 175 LLDLVSYHIKGGETESLQ 192
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 268 LAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSG 324
L +LD+S N LQ NI + M SLR LDLS N + K+ G+L L L LS
Sbjct: 102 LEYLDVSHNRLQ-NI--SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA 155
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 95/217 (43%), Gaps = 31/217 (14%)
Query: 113 DLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPS-FGNLSSLQILDL 171
+L HL L+LS N G + F +L L+L+ N P S F NL LQ+L+L
Sbjct: 371 NLSHLQTLNLSHNEPLGLQSQAF-KECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNL 429
Query: 172 NTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLF 231
Y L++ + L+ L L++LNL+G + + SL L L +CGL
Sbjct: 430 T---YCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLL 486
Query: 232 EFPPXXXXXXXXXXXXXXXXXXXXXXIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTS 291
Q ++ K++H+DLS N+L + D+ +++
Sbjct: 487 SID------------------------QQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKG 522
Query: 292 LRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLD 328
+ L+L+ NS I P+ L L ++LS N LD
Sbjct: 523 IY-LNLAANS-INIISPRLLPILSQQSTINLSHNPLD 557
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 80/195 (41%), Gaps = 41/195 (21%)
Query: 265 ISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSL------------------IGGQ 306
++L LDL+A +L+G +P + L++L LS N I G
Sbjct: 274 FTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN 332
Query: 307 IPK-DLGSLC-----NLWDLDLSGNDLDGEIIEFVDRLSKCAN------SSLESLDLGQN 354
+ K LG C NL LDLS ND++ S C + S L++L+L N
Sbjct: 333 VKKLHLGVGCLEKLGNLQTLDLSHNDIEA---------SDCCSLQLKNLSHLQTLNLSHN 383
Query: 355 NLGGFLPNSLGQLENLKILQLWGNLFRGSIPES-IGNLSSLRELYLHNNLMDGTIPKSLG 413
G + + L++L L + P+S NL L+ L L +D + L
Sbjct: 384 EPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLA 443
Query: 414 KLSHLVVLDISGNPW 428
L L L++ GN +
Sbjct: 444 GLPVLRHLNLKGNHF 458
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 72/146 (49%), Gaps = 10/146 (6%)
Query: 266 SKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDL-GSLCNLWDLDLSG 324
++ +LDL N+L+ F +TSL +L L N L +P + L +L L+LS
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL--QSLPNGVFNKLTSLTYLNLST 85
Query: 325 NDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSI 384
N L D+L++ L+ L L N L +L LK L+L+ N + S+
Sbjct: 86 NQLQSLPNGVFDKLTQ-----LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SV 139
Query: 385 PESI-GNLSSLRELYLHNNLMDGTIP 409
P+ + L+SL+ ++LH+N D T P
Sbjct: 140 PDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 349 LDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGN-LSSLRELYLHNNLMDGT 407
LDL N+L +L +L L L GN + S+P + N L+SL L L N +
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 408 IPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRLTLVFN 462
KL+ L L ++ N L V F KL LK+L + + L VF+
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGV-FDKLTQLKDLRLYQNQLKSVPDGVFD 145
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 9/194 (4%)
Query: 258 IPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNL 317
+P+ + ++L LDL N ++ D FA+ L EL+L+EN ++ P +L NL
Sbjct: 26 VPEGIPTETRL--LDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNL 82
Query: 318 WDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWG 377
L L N L + L S+L LD+ +N + L L NLK L++
Sbjct: 83 RTLGLRSNRLKLIPLGVFTGL-----SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137
Query: 378 NLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHF 437
N + L+SL +L L + ++L L L+VL + + I + + F
Sbjct: 138 NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR-HLNINAIRDYSF 196
Query: 438 SKLKNLKELHIAKY 451
+L LK L I+ +
Sbjct: 197 KRLYRLKVLEISHW 210
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 14/152 (9%)
Query: 263 LNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDL 322
L S + DLS + + + F++ T L +L L++N I L +L L+L
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNL 330
Query: 323 SGN---DLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNL 379
S N +D + E +D+L E LDL N++ S L NLK L L N
Sbjct: 331 SQNFLGSIDSRMFENLDKL--------EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382
Query: 380 FRGSIPESI-GNLSSLRELYLHNNLMDGTIPK 410
+ S+P+ I L+SL++++LH N D + P+
Sbjct: 383 LK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%)
Query: 344 SSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNL 403
+ L L+L QN LG L+ L++L L N R +S L +L+EL L N
Sbjct: 323 THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382
Query: 404 MDGTIPKSLGKLSHLVVLDISGNPW 428
+ +L+ L + + NPW
Sbjct: 383 LKSVPDGIFDRLTSLQKIWLHTNPW 407
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 116 HLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIP-PSFGNLSSLQILDLNTF 174
H+NY+DLSLN+ +F L+ L++L + + I +F LSSL IL L+
Sbjct: 31 HVNYVDLSLNSIAELNETSF-SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 175 YYSSLESDDVEWLSRLS--SLQYLNLEGVDLS 204
+ LE+ L+ L +L NL+G LS
Sbjct: 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLS 121
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 94/217 (43%), Gaps = 31/217 (14%)
Query: 113 DLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPS-FGNLSSLQILDL 171
+L+HL YL+LS N G F +L L+++ P S F NL L++L+L
Sbjct: 373 NLRHLQYLNLSYNEPLGLEDQAF-KECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNL 431
Query: 172 NTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLF 231
+ + L++ + L+ L L++LNL+G S M+ SL L L +C L
Sbjct: 432 S---HCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLL 488
Query: 232 EFPPXXXXXXXXXXXXXXXXXXXXXXIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTS 291
Q + + HLDLS N+L G+ DA +++
Sbjct: 489 SID------------------------QQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKG 524
Query: 292 LRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLD 328
L L+++ N+ I P L +L ++LS N LD
Sbjct: 525 LY-LNMASNN-IRIIPPHLLPALSQQSIINLSHNPLD 559
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 81/195 (41%), Gaps = 41/195 (21%)
Query: 265 ISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSL------------------IGGQ 306
+++ LDL+A +L G +P M SL++L L+ NS I G
Sbjct: 276 FTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGN 334
Query: 307 IPK-DLGSLC-----NLWDLDLSGNDLDGEIIEFVDRLSKCAN------SSLESLDLGQN 354
+ K DLG+ C NL LDLS +D++ S C N L+ L+L N
Sbjct: 335 MRKLDLGTRCLEKLENLQKLDLSHSDIEA---------SDCCNLQLKNLRHLQYLNLSYN 385
Query: 355 NLGGFLPNSLGQLENLKILQLWGNLFRGSIPES-IGNLSSLRELYLHNNLMDGTIPKSLG 413
G + + L++L + P S NL LR L L + L+D + L
Sbjct: 386 EPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLA 445
Query: 414 KLSHLVVLDISGNPW 428
L L L++ GN +
Sbjct: 446 GLQDLRHLNLQGNSF 460
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 65/143 (45%), Gaps = 23/143 (16%)
Query: 291 SLRELDLSENSLIGGQIPKDLGSLCNLWD-LDLSG---NDLDGEII--EFVDRLSKCANS 344
S+ E D EN ++ +PKD LW LDLS ++ I +F+ RL NS
Sbjct: 202 SIDEDDDIENRMV---MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS 258
Query: 345 SLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLM 404
E LP + L NL++L L N S+P +G+ L+ Y +N++
Sbjct: 259 LTE------------LPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYFFDNMV 305
Query: 405 DGTIPKSLGKLSHLVVLDISGNP 427
T+P G L +L L + GNP
Sbjct: 306 -TTLPWEFGNLCNLQFLGVEGNP 327
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 258 IPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNL 317
+P + N+S L LDLS N L +P + L+ +N + +P + G+LCNL
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVTT--LPWEFGNLCNL 318
Query: 318 WDLDLSGNDLDGEIIEFVDRLS 339
L + GN L+ + ++ + S
Sbjct: 319 QFLGVEGNPLEKQFLKILTEKS 340
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 73/166 (43%), Gaps = 11/166 (6%)
Query: 265 ISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSG 324
+SKL L L N ++ AF + SLR LDL E + L NL L+L+
Sbjct: 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194
Query: 325 NDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSI 384
+L EI + L+ LDL N+L P S L +L+ L + + +
Sbjct: 195 CNLR-EIPNLTPLIK------LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247
Query: 385 PESIGNLSSLRELYL-HNNLMDGTIPKSL-GKLSHLVVLDISGNPW 428
+ NL SL E+ L HNNL +P L L HL + + NPW
Sbjct: 248 RNAFDNLQSLVEINLAHNNLT--LLPHDLFTPLHHLERIHLHHNPW 291
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 89/228 (39%), Gaps = 37/228 (16%)
Query: 73 CDNSTGKVVQLKLRSPEIPDSFTDNGTTYQL-EGEIS----PSVLDLKHLNYLDLSLNNF 127
C N KV+ ++ E+PD + N L E +I S L+HL L LS N+
Sbjct: 41 CSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100
Query: 128 RGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWL 187
R I F G L L L L +F LS L+ L L + +ES
Sbjct: 101 RTIEIGAFNG-LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN---NPIESIPSYAF 156
Query: 188 SRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPXXXXXXXXXXXX 247
+R+ SL+ L+L +L + A L +L L+L C L E P
Sbjct: 157 NRIPSLRRLDLG--ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN------------ 202
Query: 248 XXXXXXXXXXIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLREL 295
L + KL LDLS N+L P +F + L++L
Sbjct: 203 --------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 346 LESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPE-SIGNLSSLRELYLHNNLM 404
LE L L +N++ + L NL L+L+ N +IP + LS L+EL+L NN +
Sbjct: 90 LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPI 148
Query: 405 DGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLA--PRLT 458
+ + ++ L LD+ + ++E F L NL+ L++A +L P LT
Sbjct: 149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLT 204
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%)
Query: 114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNT 173
L L L ++ N+F+ + +P+ L L +L+LS P +F +LSSLQ+L+++
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 174 FYYSSLESDDVEWLSRLSSLQY 195
+ SL++ + L+ L L Y
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDY 230
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 265 ISKLAHLDLSANNLQGN-IPDAFANMTSLRELDLSENSLIGGQI-PKDLGSLCNLWDLDL 322
+S L L ++ N+ Q N +PD F + +L LDLS+ L Q+ P SL +L L++
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL--EQLSPTAFNSLSSLQVLNM 206
Query: 323 SGNDLDGEIIEFVDRL-SKCANSSLESLDLGQNNL 356
S N+ +D KC N SL+ LD N++
Sbjct: 207 SHNNFFS-----LDTFPYKCLN-SLQVLDYSLNHI 235
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 71/166 (42%), Gaps = 11/166 (6%)
Query: 265 ISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSG 324
+SKL L L N ++ AF + SLR LDL E + L NL L+L
Sbjct: 106 LSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGM 165
Query: 325 NDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSI 384
+L D + A LE L+L N L P S L +L+ L L
Sbjct: 166 CNLK-------DIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIE 218
Query: 385 PESIGNLSSLRELYL-HNNLMDGTIPKSL-GKLSHLVVLDISGNPW 428
+ +L SL EL L HNNLM ++P L L L + ++ NPW
Sbjct: 219 RNAFDDLKSLEELNLSHNNLM--SLPHDLFTPLHRLERVHLNHNPW 262
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Query: 346 LESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMD 405
LE L L +N + + L +L L+L+ N ++ LS LREL+L NN ++
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE 120
Query: 406 GTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLA--PRLT 458
+ ++ L LD+ + ++E F L NL+ L++ +L P LT
Sbjct: 121 SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLT 175
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%)
Query: 114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNT 173
L L L ++ N+F+ + +P+ L L +L+LS P +F +LSSLQ+L+++
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 174 FYYSSLESDDVEWLSRLSSLQY 195
+ SL++ + L+ L L Y
Sbjct: 528 NNFFSLDTFPYKCLNSLQVLDY 549
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 271 LDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKD--LGSLCNLWDLDLSGNDLD 328
LDLS N L+ +F + L+ LDLS + Q +D SL +L L L+GN +
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI---QTIEDGAYQSLSHLSTLILTGNPIQ 113
Query: 329 GEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRG-SIPES 387
+ LS SL+ L + NL +G L+ LK L + NL + +PE
Sbjct: 114 SLALGAFSGLS-----SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 168
Query: 388 IGNLSSLRELYLHNN 402
NL++L L L +N
Sbjct: 169 FSNLTNLEHLDLSSN 183
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 265 ISKLAHLDLSANNLQGN-IPDAFANMTSLRELDLSENSLIGGQI-PKDLGSLCNLWDLDL 322
+S L L ++ N+ Q N +PD F + +L LDLS+ L Q+ P SL +L L++
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL--EQLSPTAFNSLSSLQVLNM 525
Query: 323 SGNDLDGEIIEFVDRL-SKCANSSLESLDLGQNNL 356
S N+ +D KC N SL+ LD N++
Sbjct: 526 SHNNFFS-----LDTFPYKCLN-SLQVLDYSLNHI 554
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 5/122 (4%)
Query: 159 SFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLP 218
SF + LQ+LDL+ ++E + LS LS+L L G + + L
Sbjct: 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI---LTGNPIQSLALGAFSGLSSLQ 127
Query: 219 SLSELHLPACGLFEFPPXXXXXXXXXXXXXXXXXXXXXXIPQWLLNISKLAHLDLSANNL 278
L + L FP +P++ N++ L HLDLS+N +
Sbjct: 128 KLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Query: 279 QG 280
Q
Sbjct: 186 QS 187
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 287 ANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDL 327
++ +L+EL+++ N + ++P+ +L NL LDLS N +
Sbjct: 145 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 107 ISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSL 166
+S + L L+ L +LD +N + + SL L YL++S F LSSL
Sbjct: 412 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 471
Query: 167 QILDL--NTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELH 224
++L + N+F + L + + L +L +L+L L + + A N L SL L+
Sbjct: 472 EVLKMAGNSFQENFLP----DIFTELRNLTFLDLSQCQLEQLSPT---AFNSLSSLQVLN 524
Query: 225 LPACGLF 231
+ F
Sbjct: 525 MSHNNFF 531
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%)
Query: 114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNT 173
L L L ++ N+F+ + +P+ L L +L+LS P +F +LSSLQ+L+++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 174 FYYSSLESDDVEWLSRLSSLQY 195
+ SL++ + L+ L L Y
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDY 525
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 271 LDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKD--LGSLCNLWDLDLSGNDLD 328
LDLS N L+ +F + L+ LDLS + Q +D SL +L L L+GN +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI---QTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 329 GEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRG-SIPES 387
+ LS SL+ L + NL +G L+ LK L + NL + +PE
Sbjct: 90 SLALGAFSGLS-----SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144
Query: 388 IGNLSSLRELYLHNN 402
NL++L L L +N
Sbjct: 145 FSNLTNLEHLDLSSN 159
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 265 ISKLAHLDLSANNLQGN-IPDAFANMTSLRELDLSENSLIGGQI-PKDLGSLCNLWDLDL 322
+S L L ++ N+ Q N +PD F + +L LDLS+ L Q+ P SL +L L++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL--EQLSPTAFNSLSSLQVLNM 501
Query: 323 SGNDLDGEIIEFVDRL-SKCANSSLESLDLGQNNL 356
S N+ +D KC N SL+ LD N++
Sbjct: 502 SHNNFFS-----LDTFPYKCLN-SLQVLDYSLNHI 530
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 287 ANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDG 329
++ +L+EL+++ N + ++P+ +L NL LDLS N +
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 5/122 (4%)
Query: 159 SFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLP 218
SF + LQ+LDL+ ++E + LS LS+L L G + + L
Sbjct: 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI---LTGNPIQSLALGAFSGLSSLQ 103
Query: 219 SLSELHLPACGLFEFPPXXXXXXXXXXXXXXXXXXXXXXIPQWLLNISKLAHLDLSANNL 278
L + L FP +P++ N++ L HLDLS+N +
Sbjct: 104 KLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Query: 279 QG 280
Q
Sbjct: 162 QS 163
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 107 ISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSL 166
+S + L L+ L +LD +N + + SL L YL++S F LSSL
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447
Query: 167 QILDL--NTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELH 224
++L + N+F + L + + L +L +L+L L + + A N L SL L+
Sbjct: 448 EVLKMAGNSFQENFLP----DIFTELRNLTFLDLSQCQLEQLSPT---AFNSLSSLQVLN 500
Query: 225 LPACGLF 231
+ F
Sbjct: 501 MSHNNFF 507
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 71/166 (42%), Gaps = 11/166 (6%)
Query: 265 ISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSG 324
+SKL L L N ++ AF + SLR LDL E + L NL L+L
Sbjct: 106 LSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGM 165
Query: 325 NDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSI 384
+L D + A LE L+L N L P S L +L+ L L
Sbjct: 166 CNLK-------DIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIE 218
Query: 385 PESIGNLSSLRELYL-HNNLMDGTIPKSL-GKLSHLVVLDISGNPW 428
+ +L SL EL L HNNLM ++P L L L + ++ NPW
Sbjct: 219 RNAFDDLKSLEELNLSHNNLM--SLPHDLFTPLHRLERVHLNHNPW 262
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Query: 346 LESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMD 405
LE L L +N + + L +L L+L+ N ++ LS LREL+L NN ++
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE 120
Query: 406 GTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLA--PRLT 458
+ ++ L LD+ + ++E F L NL+ L++ +L P LT
Sbjct: 121 SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLT 175
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Query: 346 LESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMD 405
LE L LG+N++ + L +L L+L+ N + LS LREL+L NN ++
Sbjct: 101 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160
Query: 406 GTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLA--PRLT 458
+ ++ L+ LD+ + ++E F L NLK L++ ++ P LT
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLT 215
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 97/226 (42%), Gaps = 46/226 (20%)
Query: 266 SKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSL----IGG---------------- 305
S +L+L NN+Q D F ++ L L L NS+ +G
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134
Query: 306 --QIPKD-LGSLCNLWDLDLSGNDLD------------------GEI--IEFVDRLSKCA 342
IP L L +L L N ++ GE+ +E++ +
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194
Query: 343 NSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNN 402
+L+ L+LG N+ +PN L L L+ L++ GN F P S LSSL++L++ N+
Sbjct: 195 LFNLKYLNLGMCNIKD-MPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252
Query: 403 LMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
+ + L+ LV L+++ N L ++ F+ L+ L ELH+
Sbjct: 253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDL-FTPLRYLVELHL 297
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 96 DNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGN 155
D G +LE + L +L YL+L + N + +PN L L L L +SG F
Sbjct: 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MPN-LTPLVGLEELEMSGNHFPEI 233
Query: 156 IPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLS 204
P SF LSSL+ L + S +E + + L+SL LNL +LS
Sbjct: 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFD---GLASLVELNLAHNNLS 279
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 67/146 (45%), Gaps = 10/146 (6%)
Query: 262 LLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDL-GSLCNLWDL 320
L ++ L +L L+ N LQ F +T+L+EL L EN L +P + L NL L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL--QSLPDGVFDKLTNLTYL 138
Query: 321 DLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLF 380
L N L D+L ++L LDL N L +L LK L L N
Sbjct: 139 YLYHNQLQSLPKGVFDKL-----TNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQL 193
Query: 381 RGSIPESI-GNLSSLRELYLHNNLMD 405
+ S+P+ + L+SL ++L NN D
Sbjct: 194 K-SVPDGVFDRLTSLTHIWLLNNPWD 218
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 360 LPNSL-GQLENLKILQLWGNLFRGSIPESI-GNLSSLRELYLHNNLMDGTIPKSLGKLSH 417
LPN + +L NLK L L N + S+P+ + L++L LYL++N + KL++
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTN 158
Query: 418 LVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448
L LD+ N L V F KL LK+L +
Sbjct: 159 LTRLDLDNNQLQSLPEGV-FDKLTQLKQLSL 188
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 345 SLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESI-GNLSSLRELYLHNNL 403
+LES++ G N L G++ LK L L N + S+P+ I L+SL++++LH N
Sbjct: 171 NLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLK-SVPDGIFDRLTSLQKIWLHTNP 229
Query: 404 MDGTIPK 410
D + P+
Sbjct: 230 WDCSCPR 236
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 7/164 (4%)
Query: 266 SKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGN 325
+ L +LDLS N + + F + L LD ++L SL NL LD+S
Sbjct: 373 TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431
Query: 326 DLDGEIIEFVDRLSKCANSSLESLDLGQNNLG-GFLPNSLGQLENLKILQLWGNLFRGSI 384
+ LS SLE L + N+ FLP+ +L NL L L
Sbjct: 432 HTRVAFNGIFNGLS-----SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486
Query: 385 PESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPW 428
P + +LSSL+ L + +N + +L+ L + + NPW
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNT 173
L L L ++ N+F+ + +P+ L L +L+LS P +F +LSSLQ+L++ +
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 174 FYYSSLESDDVEWLSRLSSLQ 194
+ L+S RL+SLQ
Sbjct: 504 ---NQLKSVPDGIFDRLTSLQ 521
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 271 LDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKD--LGSLCNLWDLDLSGNDLD 328
LDLS N L+ +F + L+ LDLS + Q +D SL +L L L+GN +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI---QTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 329 GEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRG-SIPES 387
+ LS SL+ L + NL +G L+ LK L + NL + +PE
Sbjct: 90 SLALGAFSGLS-----SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144
Query: 388 IGNLSSLRELYLHNN 402
NL++L L L +N
Sbjct: 145 FSNLTNLEHLDLSSN 159
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 5/121 (4%)
Query: 159 SFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLP 218
SF + LQ+LDL+ ++E + LS LS+L L G + + L
Sbjct: 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI---LTGNPIQSLALGAFSGLSSLQ 103
Query: 219 SLSELHLPACGLFEFPPXXXXXXXXXXXXXXXXXXXXXXIPQWLLNISKLAHLDLSANNL 278
L + L FP +P++ N++ L HLDLS+N +
Sbjct: 104 KLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Query: 279 Q 279
Q
Sbjct: 162 Q 162
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 9/130 (6%)
Query: 107 ISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSL 166
+S + L L+ L +LD +N + + SL L YL++S F LSSL
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447
Query: 167 QILDL--NTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELH 224
++L + N+F + L + + L +L +L+L L + + A N L SL L+
Sbjct: 448 EVLKMAGNSFQENFLP----DIFTELRNLTFLDLSQCQLEQLSPT---AFNSLSSLQVLN 500
Query: 225 LPACGLFEFP 234
+ + L P
Sbjct: 501 MASNQLKSVP 510
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 287 ANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDL 327
++ +L+EL+++ N + ++P+ +L NL LDLS N +
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%)
Query: 346 LESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMD 405
L L+L +N L G PN+ +++ LQL N + + L L+ L L++N +
Sbjct: 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115
Query: 406 GTIPKSLGKLSHLVVLDISGNPW 428
+P S L+ L L+++ NP+
Sbjct: 116 CVMPGSFEHLNSLTSLNLASNPF 138
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 265 ISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSL 302
+ L L+L N L G P+AF + ++EL L EN +
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%)
Query: 343 NSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNN 402
++++SLDL N + L NL++L L + ++ +L SL L L +N
Sbjct: 51 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 110
Query: 403 LMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIA 449
+ G LS L L++ GNP+ L F L NL+ L I
Sbjct: 111 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 157
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 73/155 (47%), Gaps = 36/155 (23%)
Query: 291 SLRELDLSENSLIGGQIPKD-LGSLCNLWDLDLSGNDLDG--------EIIEFVD----- 336
SL+ L LS+N L Q + L +L NL LD+S N E + F++
Sbjct: 388 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG 447
Query: 337 -RLSK-CANSSLESLDLGQNNLGG---FLP---------NSLGQLEN------LKILQLW 376
R+ K C +LE LD+ NNL FLP N L L + L ++++
Sbjct: 448 IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKIA 507
Query: 377 GNLFRGSIPESI-GNLSSLRELYLHNNLMDGTIPK 410
N + S+P+ I L+SL++++LH N D + P+
Sbjct: 508 SNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 541
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 159 SFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLP 218
+F +L SL+ LDL+ + SSL S W LSSL+YLNL G G T++ P
Sbjct: 95 AFYSLGSLEHLDLSDNHLSSLSSS---WFGPLSSLKYLNLMGNPYQTLG-----VTSLFP 146
Query: 219 SLSELHLPACG 229
+L+ L G
Sbjct: 147 NLTNLQTLRIG 157
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 10/96 (10%)
Query: 103 LEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASF----AGNIPP 158
+EG+ S+ L+HL+ D L++ S + G L L+YLNL G + ++ P
Sbjct: 91 IEGDAFYSLGSLEHLDLSDNHLSSLSSS----WFGPLSSLKYLNLMGNPYQTLGVTSLFP 146
Query: 159 SFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQ 194
+ NL +L+I ++ TF S + D L+ L+ L+
Sbjct: 147 NLTNLQTLRIGNVETF--SEIRRIDFAGLTSLNELE 180
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 100 TYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGA 150
+ Q GEI +L LK+L LD+S N F +P+ EK+R+LNLS
Sbjct: 401 SMQKTGEI---LLTLKNLTSLDISRNTFHP--MPDSCQWPEKMRFLNLSST 446
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%)
Query: 343 NSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNN 402
++++SLDL N + L NL++L L + ++ +L SL L L +N
Sbjct: 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84
Query: 403 LMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIA 449
+ G LS L L++ GNP+ L F L NL+ L I
Sbjct: 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 159 SFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLP 218
+F +L SL+ LDL+ + SSL S W LSSL+YLNL G G T++ P
Sbjct: 69 AFYSLGSLEHLDLSDNHLSSLSS---SWFGPLSSLKYLNLMGNPYQTLG-----VTSLFP 120
Query: 219 SLSELHLPACGLFE 232
+L+ L G E
Sbjct: 121 NLTNLQTLRIGNVE 134
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 73/155 (47%), Gaps = 36/155 (23%)
Query: 291 SLRELDLSENSLIGGQIPKD-LGSLCNLWDLDLSGNDLDG--------EIIEFVD----- 336
SL+ L LS+N L Q + L +L NL LD+S N E + F++
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG 421
Query: 337 -RLSK-CANSSLESLDLGQNNLGG---FLP---------NSLGQLEN------LKILQLW 376
R+ K C +LE LD+ NNL FLP N L L + L ++++
Sbjct: 422 IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKIS 481
Query: 377 GNLFRGSIPESI-GNLSSLRELYLHNNLMDGTIPK 410
N + S+P+ I L+SL++++LH N D + P+
Sbjct: 482 RNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 10/96 (10%)
Query: 103 LEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASF----AGNIPP 158
+EG+ S+ L+HL+ D L++ S + G L L+YLNL G + ++ P
Sbjct: 65 IEGDAFYSLGSLEHLDLSDNHLSSLSSS----WFGPLSSLKYLNLMGNPYQTLGVTSLFP 120
Query: 159 SFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQ 194
+ NL +L+I ++ TF S + D L+ L+ L+
Sbjct: 121 NLTNLQTLRIGNVETF--SEIRRIDFAGLTSLNELE 154
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 100 TYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGA 150
+ Q GEI +L LK+L LD+S N F +P+ EK+R+LNLS
Sbjct: 375 SMQKTGEI---LLTLKNLTSLDISRNTFHP--MPDSCQWPEKMRFLNLSST 420
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 7/121 (5%)
Query: 306 QIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLG 365
Q+P DL + N+ L+L+ N L R S+ L SLD+G N + P
Sbjct: 23 QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQ-----LTSLDVGFNTISKLEPELCQ 75
Query: 366 QLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISG 425
+L LK+L L N ++ ++L EL+L +N + K +L+ LD+S
Sbjct: 76 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH 135
Query: 426 N 426
N
Sbjct: 136 N 136
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 87/211 (41%), Gaps = 21/211 (9%)
Query: 266 SKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGN 325
+ L LDLS NNL D+FA + L L N+ I L L N+ L+L +
Sbjct: 253 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN-IQHLFSHSLHGLFNVRYLNLKRS 311
Query: 326 DLDGEI----IEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNL-- 379
I + +D S LE L++ N++ G N L NLK L L +
Sbjct: 312 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 371
Query: 380 FRGSIPESIGNL--SSLRELYLHNNLMDGTIPKSLGKLSHLVVLD---------ISGNPW 428
R E+ +L S L L L N + + L HL VLD ++G W
Sbjct: 372 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 431
Query: 429 IGL--VTEVHFSKLKNLKELHIAKYSLAPRL 457
GL + E++ S K L +L ++L P L
Sbjct: 432 RGLENIFEIYLSYNKYL-QLTRNSFALVPSL 461
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 122/331 (36%), Gaps = 53/331 (16%)
Query: 114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGA--SFAGNIPPSFGNL--SSLQIL 169
LK L +L++ N+ G + F G L L+YL+LS + S +F +L S L IL
Sbjct: 333 LKCLEHLNMEDNDIPGIKSNMFTG-LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 391
Query: 170 DLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACG 229
+L S +ESD WL L L L L + G W N+ E++L
Sbjct: 392 NLTKNKISKIESDAFSWLGHLEVLD-LGLNEIGQELTGQEWRGLENIF----EIYLSYNK 446
Query: 230 LFEFPPXXXXX--XXXXXXXXXXXXXXXXXIPQWLLNISKLAHLDLSANNLQGNIPDAFA 287
+ P + L LDLS NN+ D
Sbjct: 447 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 506
Query: 288 NMTSLRELDLSENSLI--------GGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLS 339
+ L LDL N+L GG I L L +L L+L N D +E L
Sbjct: 507 GLEKLEILDLQHNNLARLWKHANPGGPI-YFLKGLSHLHILNLESNGFDEIPVEVFKDLF 565
Query: 340 KCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESI-GNLSSLRELY 398
+ L+ +DLG NNL ++P S+ N SL+ L
Sbjct: 566 E-----LKIIDLGLNNL-------------------------NTLPASVFNNQVSLKSLN 595
Query: 399 LHNNLMDGTIPKSLG-KLSHLVVLDISGNPW 428
L NL+ K G +L LD+ NP+
Sbjct: 596 LQKNLITSVEKKVFGPAFRNLTELDMRFNPF 626
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 21/172 (12%)
Query: 266 SKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSL----IGGQIPKDLGSLCNLWDLD 321
+ L L L +N++Q + F +L LDLS N L +G Q+ + +L
Sbjct: 102 TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ-----ELL 156
Query: 322 LSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLP---NSLGQLENLKI--LQLW 376
LS N + E +D ANSSL+ L+L N + F P +++G+L L + +QL
Sbjct: 157 LSNNKIQALKSEELDIF---ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 213
Query: 377 GNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKS-LG-KLSHLVVLDISGN 426
+L E + N +S+R L L N+ + T + LG K ++L +LD+S N
Sbjct: 214 PSLTEKLCLE-LAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 263
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 7/121 (5%)
Query: 306 QIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLG 365
Q+P DL + N+ L+L+ N L R S+ L SLD+G N + P
Sbjct: 28 QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQ-----LTSLDVGFNTISKLEPELCQ 80
Query: 366 QLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISG 425
+L LK+L L N ++ ++L EL+L +N + K +L+ LD+S
Sbjct: 81 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH 140
Query: 426 N 426
N
Sbjct: 141 N 141
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 87/211 (41%), Gaps = 21/211 (9%)
Query: 266 SKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGN 325
+ L LDLS NNL D+FA + L L N+ I L L N+ L+L +
Sbjct: 258 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN-IQHLFSHSLHGLFNVRYLNLKRS 316
Query: 326 DLDGEI----IEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNL-- 379
I + +D S LE L++ N++ G N L NLK L L +
Sbjct: 317 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 376
Query: 380 FRGSIPESIGNL--SSLRELYLHNNLMDGTIPKSLGKLSHLVVLD---------ISGNPW 428
R E+ +L S L L L N + + L HL VLD ++G W
Sbjct: 377 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 436
Query: 429 IGL--VTEVHFSKLKNLKELHIAKYSLAPRL 457
GL + E++ S K L +L ++L P L
Sbjct: 437 RGLENIFEIYLSYNKYL-QLTRNSFALVPSL 466
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 122/331 (36%), Gaps = 53/331 (16%)
Query: 114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGA--SFAGNIPPSFGNL--SSLQIL 169
LK L +L++ N+ G + F G L L+YL+LS + S +F +L S L IL
Sbjct: 338 LKCLEHLNMEDNDIPGIKSNMFTG-LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 396
Query: 170 DLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACG 229
+L S +ESD WL L L L L + G W N+ E++L
Sbjct: 397 NLTKNKISKIESDAFSWLGHLEVLD-LGLNEIGQELTGQEWRGLENIF----EIYLSYNK 451
Query: 230 LFEFPPXXXXX--XXXXXXXXXXXXXXXXXIPQWLLNISKLAHLDLSANNLQGNIPDAFA 287
+ P + L LDLS NN+ D
Sbjct: 452 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 511
Query: 288 NMTSLRELDLSENSLI--------GGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLS 339
+ L LDL N+L GG I L L +L L+L N D +E L
Sbjct: 512 GLEKLEILDLQHNNLARLWKHANPGGPI-YFLKGLSHLHILNLESNGFDEIPVEVFKDLF 570
Query: 340 KCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESI-GNLSSLRELY 398
+ L+ +DLG NNL ++P S+ N SL+ L
Sbjct: 571 E-----LKIIDLGLNNL-------------------------NTLPASVFNNQVSLKSLN 600
Query: 399 LHNNLMDGTIPKSLG-KLSHLVVLDISGNPW 428
L NL+ K G +L LD+ NP+
Sbjct: 601 LQKNLITSVEKKVFGPAFRNLTELDMRFNPF 631
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 21/172 (12%)
Query: 266 SKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSL----IGGQIPKDLGSLCNLWDLD 321
+ L L L +N++Q + F +L LDLS N L +G Q+ + +L
Sbjct: 107 TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ-----ELL 161
Query: 322 LSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLP---NSLGQLENLKI--LQLW 376
LS N + E +D ANSSL+ L+L N + F P +++G+L L + +QL
Sbjct: 162 LSNNKIQALKSEELDIF---ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 218
Query: 377 GNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKS-LG-KLSHLVVLDISGN 426
+L E + N +S+R L L N+ + T + LG K ++L +LD+S N
Sbjct: 219 PSLTEKLCLE-LAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 268
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 7/121 (5%)
Query: 306 QIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLG 365
Q+P DL + N+ L+L+ N L R S+ L SLD+G N + P
Sbjct: 18 QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQ-----LTSLDVGFNTISKLEPELCQ 70
Query: 366 QLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISG 425
+L LK+L L N ++ ++L EL+L +N + K +L+ LD+S
Sbjct: 71 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH 130
Query: 426 N 426
N
Sbjct: 131 N 131
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 87/211 (41%), Gaps = 21/211 (9%)
Query: 266 SKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGN 325
+ L LDLS NNL D+FA + L L N+ I L L N+ L+L +
Sbjct: 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN-IQHLFSHSLHGLFNVRYLNLKRS 306
Query: 326 DLDGEI----IEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNL-- 379
I + +D S LE L++ N++ G N L NLK L L +
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366
Query: 380 FRGSIPESIGNL--SSLRELYLHNNLMDGTIPKSLGKLSHLVVLD---------ISGNPW 428
R E+ +L S L L L N + + L HL VLD ++G W
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426
Query: 429 IGL--VTEVHFSKLKNLKELHIAKYSLAPRL 457
GL + E++ S K L +L ++L P L
Sbjct: 427 RGLENIFEIYLSYNKYL-QLTRNSFALVPSL 456
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 122/331 (36%), Gaps = 53/331 (16%)
Query: 114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGA--SFAGNIPPSFGNL--SSLQIL 169
LK L +L++ N+ G + F G L L+YL+LS + S +F +L S L IL
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTG-LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386
Query: 170 DLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACG 229
+L S +ESD WL L L L L + G W N+ E++L
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLD-LGLNEIGQELTGQEWRGLENIF----EIYLSYNK 441
Query: 230 LFEFPPXXXXXX--XXXXXXXXXXXXXXXXIPQWLLNISKLAHLDLSANNLQGNIPDAFA 287
+ P + L LDLS NN+ D
Sbjct: 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501
Query: 288 NMTSLRELDLSENSLI--------GGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLS 339
+ L LDL N+L GG I L L +L L+L N D +E L
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANPGGPI-YFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560
Query: 340 KCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESI-GNLSSLRELY 398
+ L+ +DLG NNL ++P S+ N SL+ L
Sbjct: 561 E-----LKIIDLGLNNL-------------------------NTLPASVFNNQVSLKSLN 590
Query: 399 LHNNLMDGTIPKSLG-KLSHLVVLDISGNPW 428
L NL+ K G +L LD+ NP+
Sbjct: 591 LQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 21/172 (12%)
Query: 266 SKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSL----IGGQIPKDLGSLCNLWDLD 321
+ L L L +N++Q + F +L LDLS N L +G Q+ + +L
Sbjct: 97 TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ-----ELL 151
Query: 322 LSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLP---NSLGQLENLKI--LQLW 376
LS N + E +D ANSSL+ L+L N + F P +++G+L L + +QL
Sbjct: 152 LSNNKIQALKSEELDIF---ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208
Query: 377 GNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKS-LG-KLSHLVVLDISGN 426
+L E + N +S+R L L N+ + T + LG K ++L +LD+S N
Sbjct: 209 PSLTEKLCLE-LAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 79/151 (52%), Gaps = 9/151 (5%)
Query: 262 LLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLD 321
L ++ KL L+ + +L+ N P ++ +L+EL+++ N + ++P+ +L NL LD
Sbjct: 101 LSSLQKLVALETNLASLE-NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 157
Query: 322 LSGNDLDGEIIEFVD-RLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLF 380
LS N + I D R+ SLDL N + P + ++ LK L L N
Sbjct: 158 LSSNKIQS--IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQL 214
Query: 381 RGSIPESI-GNLSSLRELYLHNNLMDGTIPK 410
+ S+P+ I L+SL++++LH N D + P+
Sbjct: 215 K-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 244
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 271 LDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKD--LGSLCNLWDLDLSGNDLD 328
LDLS N L+ +F + L+ LDLS + Q +D SL +L L L+GN +
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI---QTIEDGAYQSLSHLSTLILTGNPIQ 91
Query: 329 GEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRG-SIPES 387
+ LS SL+ L + NL +G L+ LK L + NL + +PE
Sbjct: 92 SLALGAFSGLS-----SLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 146
Query: 388 IGNLSSLRELYLHNN 402
NL++L L L +N
Sbjct: 147 FSNLTNLEHLDLSSN 161
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 5/122 (4%)
Query: 159 SFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLP 218
SF + LQ+LDL+ ++E + LS LS+L L G + + L
Sbjct: 49 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI---LTGNPIQSLALGAFSGLSSLQ 105
Query: 219 SLSELHLPACGLFEFPPXXXXXXXXXXXXXXXXXXXXXXIPQWLLNISKLAHLDLSANNL 278
L L L FP +P++ N++ L HLDLS+N +
Sbjct: 106 KLVALETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Query: 279 QG 280
Q
Sbjct: 164 QS 165
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 35.0 bits (79), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 9/151 (5%)
Query: 262 LLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLD 321
L ++ KL ++ + +L+ N P ++ +L+EL+++ N + ++P+ +L NL LD
Sbjct: 99 LSSLQKLVAVETNLASLE-NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 322 LSGNDLDGEIIEFVD-RLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLF 380
LS N + I D R+ SLDL N + P + ++ LK L L N
Sbjct: 156 LSSNKIQS--IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQL 212
Query: 381 RGSIPESI-GNLSSLRELYLHNNLMDGTIPK 410
+ S+P+ I L+SL++++LH N D + P+
Sbjct: 213 K-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 271 LDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKD--LGSLCNLWDLDLSGNDLD 328
LDLS N L+ +F + L+ LDLS + Q +D SL +L L L+GN +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI---QTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 329 GEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRG-SIPES 387
+ LS SL+ L + NL +G L+ LK L + NL + +PE
Sbjct: 90 SLALGAFSGLS-----SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144
Query: 388 IGNLSSLRELYLHNN 402
NL++L L L +N
Sbjct: 145 FSNLTNLEHLDLSSN 159
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 68/172 (39%), Gaps = 10/172 (5%)
Query: 109 PSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQI 168
P V + ++ Y + LN ++ IP+ L K L+ + G+ SF + LQ+
Sbjct: 2 PCVEVVPNITYQCMELNFYK---IPDNLPFSTKNLDLSFNPLRHLGSY--SFFSFPELQV 56
Query: 169 LDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPAC 228
LDL+ ++E + LS LS+L L G + + L L +
Sbjct: 57 LDLSRCEIQTIEDGAYQSLSHLSTLI---LTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 229 GLFEFPPXXXXXXXXXXXXXXXXXXXXXXIPQWLLNISKLAHLDLSANNLQG 280
L FP +P++ N++ L HLDLS+N +Q
Sbjct: 114 SLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 9/151 (5%)
Query: 262 LLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLD 321
L ++ KL ++ + +L+ N P ++ +L+EL+++ N + ++P+ +L NL LD
Sbjct: 101 LSSLQKLVAVETNLASLE-NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 157
Query: 322 LSGNDLDGEIIEFVD-RLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLF 380
LS N + I D R+ SLDL N + P + ++ LK L L N
Sbjct: 158 LSSNKIQS--IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQL 214
Query: 381 RGSIPESI-GNLSSLRELYLHNNLMDGTIPK 410
+ S+P+ I L+SL++++LH N D + P+
Sbjct: 215 K-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 244
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 271 LDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKD--LGSLCNLWDLDLSGNDLD 328
LDLS N L+ +F + L+ LDLS + Q +D SL +L L L+GN +
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEI---QTIEDGAYQSLSHLSTLILTGNPIQ 91
Query: 329 GEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRG-SIPES 387
+ LS SL+ L + NL +G L+ LK L + NL + +PE
Sbjct: 92 SLALGAFSGLS-----SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 146
Query: 388 IGNLSSLRELYLHNN 402
NL++L L L +N
Sbjct: 147 FSNLTNLEHLDLSSN 161
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 5/122 (4%)
Query: 159 SFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLP 218
SF + LQ+LDL+ ++E + LS LS+L L G + + L
Sbjct: 49 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI---LTGNPIQSLALGAFSGLSSLQ 105
Query: 219 SLSELHLPACGLFEFPPXXXXXXXXXXXXXXXXXXXXXXIPQWLLNISKLAHLDLSANNL 278
L + L FP +P++ N++ L HLDLS+N +
Sbjct: 106 KLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Query: 279 QG 280
Q
Sbjct: 164 QS 165
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 9/151 (5%)
Query: 262 LLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLD 321
L ++ KL ++ + +L+ N P ++ +L+EL+++ N + ++P+ +L NL LD
Sbjct: 100 LSSLQKLVAVETNLASLE-NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 156
Query: 322 LSGNDLDGEIIEFVD-RLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLF 380
LS N + I D R+ SLDL N + P + ++ LK L L N
Sbjct: 157 LSSNKIQS--IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQL 213
Query: 381 RGSIPESI-GNLSSLRELYLHNNLMDGTIPK 410
+ S+P+ I L+SL++++LH N D + P+
Sbjct: 214 K-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 243
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 271 LDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKD--LGSLCNLWDLDLSGNDLD 328
LDLS N L+ +F + L+ LDLS + Q +D SL +L L L+GN +
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEI---QTIEDGAYQSLSHLSTLILTGNPIQ 90
Query: 329 GEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRG-SIPES 387
+ LS SL+ L + NL +G L+ LK L + NL + +PE
Sbjct: 91 SLALGAFSGLS-----SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 145
Query: 388 IGNLSSLRELYLHNN 402
NL++L L L +N
Sbjct: 146 FSNLTNLEHLDLSSN 160
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 10/173 (5%)
Query: 108 SPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQ 167
SP V + ++ Y + LN ++ IP+ L K L+ + G+ SF + LQ
Sbjct: 2 SPCVEVVPNITYQCMELNFYK---IPDNLPFSTKNLDLSWNPLRHLGSY--SFFSFPELQ 56
Query: 168 ILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPA 227
+LDL+ ++E + LS LS+L L G + + L L +
Sbjct: 57 VLDLSRCEIQTIEDGAYQSLSHLSTLI---LTGNPIQSLALGAFSGLSSLQKLVAVETNL 113
Query: 228 CGLFEFPPXXXXXXXXXXXXXXXXXXXXXXIPQWLLNISKLAHLDLSANNLQG 280
L FP +P++ N++ L HLDLS+N +Q
Sbjct: 114 ASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 77/176 (43%), Gaps = 33/176 (18%)
Query: 265 ISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSEN---------------SLIG--GQI 307
++ L L+ S+N + P AN+T+L LD+S N SLI QI
Sbjct: 150 LTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI 207
Query: 308 P--KDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLG 365
LG L NL +L L+GN L + + L+ N L LDL N + P L
Sbjct: 208 SDITPLGILTNLDELSLNGNQL-----KDIGTLASLTN--LTDLDLANNQISNLAP--LS 258
Query: 366 QLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKS-LGKLSHLVV 420
L L L+L N P + L++L L L+ N ++ P S L L++L +
Sbjct: 259 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTL 312
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 9/151 (5%)
Query: 262 LLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLD 321
L ++ KL ++ + +L+ N P ++ +L+EL+++ N + ++P+ +L NL LD
Sbjct: 100 LSSLQKLVAVETNLASLE-NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 156
Query: 322 LSGNDLDGEIIEFVD-RLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLF 380
LS N + I D R+ SLDL N + P + ++ LK L L N
Sbjct: 157 LSSNKIQS--IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQL 213
Query: 381 RGSIPESI-GNLSSLRELYLHNNLMDGTIPK 410
+ S+P+ I L+SL++++LH N D + P+
Sbjct: 214 K-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 243
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 271 LDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKD--LGSLCNLWDLDLSGNDLD 328
LDLS N L+ +F + L+ LDLS + Q +D SL +L L L+GN +
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI---QTIEDGAYQSLSHLSTLILTGNPIQ 90
Query: 329 GEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRG-SIPES 387
+ LS SL+ L + NL +G L+ LK L + NL + +PE
Sbjct: 91 SLALGAFSGLS-----SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 145
Query: 388 IGNLSSLRELYLHNN 402
NL++L L L +N
Sbjct: 146 FSNLTNLEHLDLSSN 160
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 5/122 (4%)
Query: 159 SFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLP 218
SF + LQ+LDL+ ++E + LS LS+L L G + + L
Sbjct: 48 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI---LTGNPIQSLALGAFSGLSSLQ 104
Query: 219 SLSELHLPACGLFEFPPXXXXXXXXXXXXXXXXXXXXXXIPQWLLNISKLAHLDLSANNL 278
L + L FP +P++ N++ L HLDLS+N +
Sbjct: 105 KLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Query: 279 QG 280
Q
Sbjct: 163 QS 164
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 34/173 (19%)
Query: 259 PQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSL--IGGQIPKDLGSLCN 316
P + +L L L LQ P F + +L+ L L +N+L + +DLG+L +
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 156
Query: 317 LWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLW 376
L+ L G I V + SL+ L L QN + P++ L L L L+
Sbjct: 157 LF--------LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 208
Query: 377 GNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWI 429
N NLS+L ++L L L L ++ NPW+
Sbjct: 209 AN-----------NLSALPT-------------EALAPLRALQYLRLNDNPWV 237
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 34/173 (19%)
Query: 259 PQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSL--IGGQIPKDLGSLCN 316
P + +L L L LQ P F + +L+ L L +N+L + +DLG+L +
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 317 LWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLW 376
L+ L G I V + SL+ L L QN + P++ L L L L+
Sbjct: 158 LF--------LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209
Query: 377 GNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWI 429
N NLS+L ++L L L L ++ NPW+
Sbjct: 210 AN-----------NLSALPT-------------EALAPLRALQYLRLNDNPWV 238
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 46/105 (43%)
Query: 345 SLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLM 404
+++SLDL N + + L + NL+ L L N +S +L SL L L N +
Sbjct: 27 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 86
Query: 405 DGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIA 449
LS L L++ GNP+ L FS L L+ L +
Sbjct: 87 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG 131
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 11/65 (16%)
Query: 110 SVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGA---SFAGNIPPSFGNLSSL 166
++L LK+L +D+S N+F +P EK++YLNLS S G IP +L
Sbjct: 382 TLLTLKNLTNIDISKNSFHS--MPETCQWPEKMKYLNLSSTRIHSVTGCIP------KTL 433
Query: 167 QILDL 171
+ILD+
Sbjct: 434 EILDV 438
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 159 SFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLP 218
SF +L SL+ LDL+ Y S+L S W LSSL +LNL G G T++
Sbjct: 69 SFSSLGSLEHLDLSYNYLSNLSS---SWFKPLSSLTFLNLLGNPYKTLG-----ETSLFS 120
Query: 219 SLSELHLPACG 229
L++L + G
Sbjct: 121 HLTKLQILRVG 131
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 369 NLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSL-GKLSHLVVLDISGNP 427
N +IL L N P +L +L+ELYL +N + G +P + L+ L VLD+ N
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ 99
Query: 428 WIGLVTEVHFSKLKNLKELHIA--KYSLAPR 456
L + V F +L +LKEL + K + PR
Sbjct: 100 LTVLPSAV-FDRLVHLKELFMCCNKLTELPR 129
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 56/125 (44%), Gaps = 11/125 (8%)
Query: 283 PDAFANMTSLRELDLSENSLIGGQIPKDL-GSLCNLWDLDLSGNDLDGEIIEFVDRLSKC 341
P F ++ +L+EL L N L G +P + SL L LDL N L DRL
Sbjct: 57 PGVFDSLINLKELYLGSNQL--GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH- 113
Query: 342 ANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPE-SIGNLSSLRELYLH 400
L+ L + N L LP + +L +L L L N + SIP + LSSL YL
Sbjct: 114 ----LKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLF 167
Query: 401 NNLMD 405
N D
Sbjct: 168 GNPWD 172
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 46/105 (43%)
Query: 345 SLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLM 404
+++SLDL N + + L + NL+ L L N +S +L SL L L N +
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 405 DGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIA 449
LS L L++ GNP+ L FS L L+ L +
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG 157
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 111/267 (41%), Gaps = 57/267 (21%)
Query: 159 SFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLP 218
SF +L SL+ LDL+ Y S+L S W LSSL +LNL G G T++
Sbjct: 95 SFSSLGSLEHLDLSYNYLSNLSS---SWFKPLSSLTFLNLLGNPYKTLG-----ETSLFS 146
Query: 219 SLSELHLPACGLFEFPPXXXXXXXXXXXXXXXXXXXXXXIPQWLLNISKLAHLDLSANNL 278
L++L + G + ++ L L++ A++L
Sbjct: 147 HLTKLQILRVGNMDTFTKIQRKD--------------------FAGLTFLEELEIDASDL 186
Query: 279 QGNIPDAFANMTSLRELDLS-ENSLIGGQIPKDLGSLCNLWDLDLSGNDLD--------- 328
Q P + ++ ++ L L + ++ +I D+ S ++ L+L DLD
Sbjct: 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS--SVECLELRDTDLDTFHFSELST 244
Query: 329 GE----IIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSI 384
GE I +F R K + SL + N + G L L+ N + S+
Sbjct: 245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLE-----------LEFSRNQLK-SV 292
Query: 385 PESI-GNLSSLRELYLHNNLMDGTIPK 410
P+ I L+SL++++LH N D + P+
Sbjct: 293 PDGIFDRLTSLQKIWLHTNPWDCSCPR 319
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Query: 262 LLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLD 321
L++ KL +LD+S N + + F +TSL L ++ NS + + NL LD
Sbjct: 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479
Query: 322 LSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKIL 373
LS L+ D L + L+ L++ NNL + QL +L L
Sbjct: 480 LSKCQLEQISWGVFDTLHR-----LQLLNMSHNNLLFLDSSHYNQLYSLSTL 526
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 81/186 (43%), Gaps = 13/186 (6%)
Query: 266 SKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGN 325
S ++DLS N L+ +F+N + L+ LDLS + + K L +L +L L+GN
Sbjct: 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE-DKAWHGLHHLSNLILTGN 90
Query: 326 DLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRG-SI 384
I+ S +SLE+L + L +GQL LK L + N +
Sbjct: 91 P-----IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKL 145
Query: 385 PESIGNLSSLRELYLHNNLMDGTIPKSLGKLSH----LVVLDISGNPWIGLVTEVHFSKL 440
P NL++L + L N + L L + LD+S NP I + + F +
Sbjct: 146 PAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP-IDFIQDQAFQGI 204
Query: 441 KNLKEL 446
K L EL
Sbjct: 205 K-LHEL 209
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Query: 262 LLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLD 321
L++ KL +LD+S N + + F +TSL L ++ NS + + NL LD
Sbjct: 415 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 474
Query: 322 LSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKIL 373
LS L+ D L + L+ L++ NNL + QL +L L
Sbjct: 475 LSKCQLEQISWGVFDTLHR-----LQLLNMSHNNLLFLDSSHYNQLYSLSTL 521
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 81/186 (43%), Gaps = 13/186 (6%)
Query: 266 SKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGN 325
S ++DLS N L+ +F+N + L+ LDLS + + K L +L +L L+GN
Sbjct: 27 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE-DKAWHGLHHLSNLILTGN 85
Query: 326 DLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRG-SI 384
I+ S +SLE+L + L +GQL LK L + N +
Sbjct: 86 P-----IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKL 140
Query: 385 PESIGNLSSLRELYLHNNLMDGTIPKSLGKLSH----LVVLDISGNPWIGLVTEVHFSKL 440
P NL++L + L N + L L + LD+S NP I + + F +
Sbjct: 141 PAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP-IDFIQDQAFQGI 199
Query: 441 KNLKEL 446
K L EL
Sbjct: 200 K-LHEL 204
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 101/261 (38%), Gaps = 46/261 (17%)
Query: 168 ILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPA 227
+LDL S L DD + L L +L +N +K +A + L L +L++
Sbjct: 58 LLDLQNNDISELRKDDFKGLQHLYALVLVN------NKISKIHEKAFSPLRKLQKLYISK 111
Query: 228 CGLFEFPPXXXXXXXXXXXXXXXXXXXXXXIPQWLLNISKLAHLDLSANNLQ--GNIPDA 285
L E PP + L N++ + ++ N L+ G P A
Sbjct: 112 NHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCI---EMGGNPLENSGFEPGA 168
Query: 286 FANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSS 345
F + L L +SE L G IPKDL N +L L N + +E + R SK
Sbjct: 169 FDGL-KLNYLRISEAKLTG--IPKDLPETLN--ELHLDHNKIQAIELEDLLRYSK----- 218
Query: 346 LESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMD 405
L L LG N + +EN S+ L +LREL+L NN +
Sbjct: 219 LYRLGLGHN--------QIRMIEN----------------GSLSFLPTLRELHLDNNKL- 253
Query: 406 GTIPKSLGKLSHLVVLDISGN 426
+P L L L V+ + N
Sbjct: 254 SRVPAGLPDLKLLQVVYLHTN 274
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 76/176 (43%), Gaps = 33/176 (18%)
Query: 265 ISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSEN---------------SLIG--GQI 307
++ L L S+N + P AN+T+L LD+S N SLI QI
Sbjct: 150 LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI 207
Query: 308 P--KDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLG 365
LG L NL +L L+GN L + + L+ N L LDL N + P L
Sbjct: 208 SDITPLGILTNLDELSLNGNQL-----KDIGTLASLTN--LTDLDLANNQISNLAP--LS 258
Query: 366 QLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKS-LGKLSHLVV 420
L L L+L N P + L++L L L+ N ++ P S L L++L +
Sbjct: 259 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTL 312
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 76/176 (43%), Gaps = 33/176 (18%)
Query: 265 ISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSEN---------------SLIG--GQI 307
++ L L S+N + P AN+T+L LD+S N SLI QI
Sbjct: 150 LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI 207
Query: 308 P--KDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLG 365
LG L NL +L L+GN L + + L+ N L LDL N + P L
Sbjct: 208 SDITPLGILTNLDELSLNGNQL-----KDIGTLASLTN--LTDLDLANNQISNLAP--LS 258
Query: 366 QLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKS-LGKLSHLVV 420
L L L+L N P + L++L L L+ N ++ P S L L++L +
Sbjct: 259 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTL 312
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
Query: 261 WLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLI-----GGQIPKDLGSLC 315
WLLN L +DLS N L+ + F M L L +S N L+ G IP
Sbjct: 243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT------ 296
Query: 316 NLWDLDLSGNDL 327
L LDLS N L
Sbjct: 297 -LKVLDLSHNHL 307
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 80/200 (40%), Gaps = 35/200 (17%)
Query: 264 NISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLS 323
N KL L +S NNL+ D F TSL+ L LS N L DL + +L+ ++S
Sbjct: 139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHANVS 194
Query: 324 GNDLDGEIIEF-VDRLSKCANS----------SLESLDLGQNNL--GGFLPNSLGQLENL 370
N L I V+ L NS L L L NNL +L N G +E
Sbjct: 195 YNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVE-- 252
Query: 371 KILQLWGNLFRGSIPESIGNLSSLRELYLHN------NLMDGTIPKSLGKLSHLVVLDIS 424
+ L N + + L LY+ N NL IP L VLD+S
Sbjct: 253 --VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT-------LKVLDLS 303
Query: 425 GNPWIGL-VTEVHFSKLKNL 443
N + + + F +L+NL
Sbjct: 304 HNHLLHVERNQPQFDRLENL 323
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
Query: 261 WLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLI-----GGQIPKDLGSLC 315
WLLN L +DLS N L+ + F M L L +S N L+ G IP
Sbjct: 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP------- 301
Query: 316 NLWDLDLSGNDL 327
L LDLS N L
Sbjct: 302 TLKVLDLSHNHL 313
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 80/200 (40%), Gaps = 35/200 (17%)
Query: 264 NISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLS 323
N KL L +S NNL+ D F TSL+ L LS N L DL + +L+ ++S
Sbjct: 145 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHANVS 200
Query: 324 GNDLDGEIIEF-VDRLSKCANS----------SLESLDLGQNNL--GGFLPNSLGQLENL 370
N L I V+ L NS L L L NNL +L N G +E
Sbjct: 201 YNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVE-- 258
Query: 371 KILQLWGNLFRGSIPESIGNLSSLRELYLHN------NLMDGTIPKSLGKLSHLVVLDIS 424
+ L N + + L LY+ N NL IP L VLD+S
Sbjct: 259 --VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT-------LKVLDLS 309
Query: 425 GNPWIGL-VTEVHFSKLKNL 443
N + + + F +L+NL
Sbjct: 310 HNHLLHVERNQPQFDRLENL 329
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 69/165 (41%), Gaps = 28/165 (16%)
Query: 265 ISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLD--- 321
++KL L+L N LQ F ++T L L L+ N L +P LG +L LD
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL--ASLP--LGVFDHLTQLDKLY 113
Query: 322 LSGNDLDGEIIEFVDRLSKCAN-------------------SSLESLDLGQNNLGGFLPN 362
L GN L DRL+K ++L++L L N L
Sbjct: 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173
Query: 363 SLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGT 407
+ +L L+ + L+GN F S E++ +RE N + DGT
Sbjct: 174 AFDRLGKLQTITLFGNQFDCSRCETLYLSQWIRE--NSNKVKDGT 216
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 130/329 (39%), Gaps = 49/329 (14%)
Query: 114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSG--ASFAGNIPPSFGNL--SSLQIL 169
LK+L YL++ NN ++ F G L L+YL+LS S +F +L S L L
Sbjct: 328 LKYLEYLNMDDNNIPSTKSNTFTG-LVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTL 386
Query: 170 DLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACG 229
+L + S + + WL +L L L L ++ +G W N+ E++L
Sbjct: 387 NLTKNHISKIANGTFSWLGQLRILD-LGLNEIEQKLSGQEWRGLRNIF----EIYLSYNK 441
Query: 230 LFEFPPXXXXXXXXXXXXXXXXXXXXXXIPQWLLNISKLAHLDLSANNLQGNIPDAFANM 289
+ + + +L L ++D+S P F +
Sbjct: 442 YLQL--------------STSSFALVPSLQRLMLRRVALKNVDIS--------PSPFRPL 479
Query: 290 TSLRELDLSENSLIGGQIPKD-LGSLCNLWDLDLSGNDLD--------GEIIEFVDRLSK 340
+L LDLS N++ I +D L L NL LD N+L G + F+ LS
Sbjct: 480 RNLTILDLSNNNI--ANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSH 537
Query: 341 CANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLH 400
+LES L + +G F L LK + L N P + +SLR L L
Sbjct: 538 LHILNLESNGLDEIPVGVF-----KNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQ 592
Query: 401 NNLMDGTIPKSLG-KLSHLVVLDISGNPW 428
NL+ G +L LD+ NP+
Sbjct: 593 KNLITSVEKDVFGPPFQNLNSLDMRFNPF 621
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 13/174 (7%)
Query: 260 QWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWD 319
Q + + L LDL +N++ + F N +L +LDLS N L ++ +
Sbjct: 91 QTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQEL 150
Query: 320 LDLSGN--DLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWG 377
L L E +EF+ NSSL LDL N L F P + L L L
Sbjct: 151 LLAKNKILALRSEELEFL------GNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNN 204
Query: 378 NLFRGSIPESIG---NLSSLRELYLHNNLMDGTIPKSLG--KLSHLVVLDISGN 426
+ E + + +S++ L L NN + T + K ++L LD+S N
Sbjct: 205 AQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYN 258
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 57/136 (41%), Gaps = 5/136 (3%)
Query: 266 SKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCN--LWDLDLS 323
S L LDLS+N L+ P F + L L L+ L K L N + +L L+
Sbjct: 171 SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLA 230
Query: 324 GNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGS 383
N L + S ++L LDL NNL S L +L+ L L N +
Sbjct: 231 NNQL---LATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRL 287
Query: 384 IPESIGNLSSLRELYL 399
P S LS+LR L L
Sbjct: 288 SPRSFYGLSNLRYLSL 303
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 5/140 (3%)
Query: 286 FANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSS 345
F +SLR+LDLS N L P ++ L+ L L+ L+ + E + + +N+S
Sbjct: 167 FLGNSSLRKLDLSSNPLKEFS-PGCFQTIGKLFALLLNNAQLNPHLTEKL--CWELSNTS 223
Query: 346 LESLDLGQNNLGGFLPNSLGQLE--NLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNL 403
+++L L N L ++ L+ NL L L N S L SLR L L N
Sbjct: 224 IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNN 283
Query: 404 MDGTIPKSLGKLSHLVVLDI 423
+ P+S LS+L L +
Sbjct: 284 IQRLSPRSFYGLSNLRYLSL 303
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 258 IPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNL 317
+P+ L N L +DLS N + +F+NMT L L LS N L P+ L +L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL-RCIPPRTFDGLKSL 104
Query: 318 WDLDLSGNDL 327
L L GND+
Sbjct: 105 RLLSLHGNDI 114
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 31/79 (39%)
Query: 349 LDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTI 408
+DL N + S + L L L N R P + L SLR L LH N +
Sbjct: 59 IDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118
Query: 409 PKSLGKLSHLVVLDISGNP 427
+ LS L L I NP
Sbjct: 119 EGAFNDLSALSHLAIGANP 137
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 67/155 (43%), Gaps = 31/155 (20%)
Query: 286 FANMTSLRELDLSEN---------------SLIG--GQIP--KDLGSLCNLWDLDLSGND 326
AN+T+L LD+S N SLI QI LG L NL +L L+GN
Sbjct: 173 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 232
Query: 327 LDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPE 386
L + + L+ N L LDL N + P L L L L+L N P
Sbjct: 233 L-----KDIGTLASLTN--LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP- 282
Query: 387 SIGNLSSLRELYLHNNLMDGTIPKS-LGKLSHLVV 420
+ L++L L L+ N ++ P S L L++L +
Sbjct: 283 -LAGLTALTNLELNENQLEDISPISNLKNLTYLTL 316
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 67/155 (43%), Gaps = 31/155 (20%)
Query: 286 FANMTSLRELDLSEN---------------SLIG--GQIP--KDLGSLCNLWDLDLSGND 326
AN+T+L LD+S N SLI QI LG L NL +L L+GN
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 227
Query: 327 LDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPE 386
L + + L+ N L LDL N + P L L L L+L N P
Sbjct: 228 L-----KDIGTLASLTN--LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP- 277
Query: 387 SIGNLSSLRELYLHNNLMDGTIPKS-LGKLSHLVV 420
+ L++L L L+ N ++ P S L L++L +
Sbjct: 278 -LAGLTALTNLELNENQLEDISPISNLKNLTYLTL 311
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 67/155 (43%), Gaps = 31/155 (20%)
Query: 286 FANMTSLRELDLSEN---------------SLIG--GQIP--KDLGSLCNLWDLDLSGND 326
AN+T+L LD+S N SLI QI LG L NL +L L+GN
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 227
Query: 327 LDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPE 386
L + + L+ N L LDL N + P L L L L+L N P
Sbjct: 228 L-----KDIGTLASLTN--LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP- 277
Query: 387 SIGNLSSLRELYLHNNLMDGTIPKS-LGKLSHLVV 420
+ L++L L L+ N ++ P S L L++L +
Sbjct: 278 -LAGLTALTNLELNENQLEDISPISNLKNLTYLTL 311
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 67/155 (43%), Gaps = 31/155 (20%)
Query: 286 FANMTSLRELDLSEN---------------SLIG--GQIP--KDLGSLCNLWDLDLSGND 326
AN+T+L LD+S N SLI QI LG L NL +L L+GN
Sbjct: 172 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 231
Query: 327 LDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPE 386
L + + L+ N L LDL N + P L L L L+L N P
Sbjct: 232 L-----KDIGTLASLTN--LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP- 281
Query: 387 SIGNLSSLRELYLHNNLMDGTIPKS-LGKLSHLVV 420
+ L++L L L+ N ++ P S L L++L +
Sbjct: 282 -LAGLTALTNLELNENQLEDISPISNLKNLTYLTL 315
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%)
Query: 344 SSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNL 403
S + + L N L LE+LK L L N +S LSS+R L L++N
Sbjct: 81 SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ 140
Query: 404 MDGTIPKSLGKLSHLVVLDISGNPW 428
+ P + L L L++ NP+
Sbjct: 141 ITTVAPGAFDTLHSLSTLNLLANPF 165
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 68/165 (41%), Gaps = 28/165 (16%)
Query: 265 ISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLD--- 321
++KL L+L N LQ F ++T L L L+ N L +P LG +L LD
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL--ASLP--LGVFDHLTQLDKLY 113
Query: 322 LSGNDLDGEIIEFVDRLSKCAN-------------------SSLESLDLGQNNLGGFLPN 362
L GN L DRL+K ++L++L L N L
Sbjct: 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173
Query: 363 SLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGT 407
+ +L L+ + L+GN F S E + +RE N + DGT
Sbjct: 174 AFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRE--NSNKVKDGT 216
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 78/197 (39%), Gaps = 35/197 (17%)
Query: 258 IPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNL 317
P +S L H + A L +PD L L L+ N L +P + SL L
Sbjct: 96 FPDQAFRLSHLQHXTIDAAGLX-ELPDTXQQFAGLETLTLARNPLRA--LPASIASLNRL 152
Query: 318 WDLD-------------LSGNDLDGEIIEFVD----RL---------SKCAN-SSLESLD 350
+L L+ D GE V+ RL + AN +L+SL
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLK 212
Query: 351 LGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHN--NLMDGTI 408
+ + L P ++ L L+ L L G + P G + L+ L L + NL+ T+
Sbjct: 213 IRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL--TL 269
Query: 409 PKSLGKLSHLVVLDISG 425
P + +L+ L LD+ G
Sbjct: 270 PLDIHRLTQLEKLDLRG 286
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 16/119 (13%)
Query: 118 NYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYS 177
N L + N S + + L KL L+L G + N PP FG + L+ L L S
Sbjct: 207 NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC--S 264
Query: 178 SLESDDVEWLSRLSSLQYLNLEG-VDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPP 235
+L + ++ + RL+ L+ L+L G V+LS+ LPSL LPA + PP
Sbjct: 265 NLLTLPLD-IHRLTQLEKLDLRGCVNLSR-----------LPSLIA-QLPANCIILVPP 310
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 57/135 (42%), Gaps = 8/135 (5%)
Query: 268 LAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDL 327
L LDLS N LQ ++P + +L LD+S N L + L L L +L L GN+L
Sbjct: 80 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNEL 137
Query: 328 DGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPES 387
+ K LE L L NNL L LENL L L N +IP+
Sbjct: 138 KTLPPGLLTPTPK-----LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG 191
Query: 388 IGNLSSLRELYLHNN 402
L +LH N
Sbjct: 192 FFGSHLLPFAFLHGN 206
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 57/135 (42%), Gaps = 8/135 (5%)
Query: 268 LAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDL 327
L LDLS N LQ ++P + +L LD+S N L + L L L +L L GN+L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNEL 136
Query: 328 DGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPES 387
+ K LE L L NNL L LENL L L N +IP+
Sbjct: 137 KTLPPGLLTPTPK-----LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG 190
Query: 388 IGNLSSLRELYLHNN 402
L +LH N
Sbjct: 191 FFGSHLLPFAFLHGN 205
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 57/135 (42%), Gaps = 8/135 (5%)
Query: 268 LAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDL 327
L LDLS N LQ ++P + +L LD+S N L + L L L +L L GN+L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNEL 136
Query: 328 DGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPES 387
+ K LE L L NNL L LENL L L N +IP+
Sbjct: 137 KTLPPGLLTPTPK-----LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG 190
Query: 388 IGNLSSLRELYLHNN 402
L +LH N
Sbjct: 191 FFGSHLLPFAFLHGN 205
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 57/135 (42%), Gaps = 8/135 (5%)
Query: 268 LAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDL 327
L LDLS N LQ ++P + +L LD+S N L + L L L +L L GN+L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNEL 136
Query: 328 DGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPES 387
+ K LE L L NNL L LENL L L N +IP+
Sbjct: 137 KTLPPGLLTPTPK-----LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG 190
Query: 388 IGNLSSLRELYLHNN 402
L +LH N
Sbjct: 191 FFGSHLLPFAFLHGN 205
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 57/135 (42%), Gaps = 8/135 (5%)
Query: 268 LAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDL 327
L LDLS N LQ ++P + +L LD+S N L + L L L +L L GN+L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNEL 136
Query: 328 DGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPES 387
+ K LE L L NNL L LENL L L N +IP+
Sbjct: 137 KTLPPGLLTPTPK-----LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG 190
Query: 388 IGNLSSLRELYLHNN 402
L +LH N
Sbjct: 191 FFGSHLLPFAFLHGN 205
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 67/297 (22%), Positives = 118/297 (39%), Gaps = 88/297 (29%)
Query: 184 VEWLSRLSSLQYLNLEGVDLSKAG--SSWVQATNM---------------LPSLSELHLP 226
++ + L++L+YLNL G ++ S+ V+ TN+ L +L EL+L
Sbjct: 59 IQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLN 118
Query: 227 ACGLFEFPPXXXXXXXXXXXXXXXXXXXXXXIPQWLLNISKLAHLDLSANNLQGNIPD-- 284
+ + P L N++K L+L AN+ N+ D
Sbjct: 119 EDNISDISP--------------------------LANLTKXYSLNLGANH---NLSDLS 149
Query: 285 AFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDG--------------E 330
+N T L L ++E S + P + +L +L+ L L+ N ++
Sbjct: 150 PLSNXTGLNYLTVTE-SKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTA 206
Query: 331 IIEFVDRLSKCANSS-LESLDLGQNNLGGFLP--------------------NSLGQLEN 369
+ + ++ AN + L SL +G N + P N++ L
Sbjct: 207 YVNQITDITPVANXTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTK 266
Query: 370 LKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGN 426
LK L + N + S + NLS L L+L+NN + + +G L++L L +S N
Sbjct: 267 LKXLNVGSN--QISDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQN 321
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 116 HLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIP-PSFGNLSSLQILDLNTF 174
H+NY+DLSLN+ +F L+ L++L + + I +F LSSL IL L+
Sbjct: 31 HVNYVDLSLNSIAELNETSF-SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 175 YYSSLESDDVEWLSRLS--SLQYLNLEGVDLS 204
+ LE+ L+ L +L NL+G LS
Sbjct: 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLS 121
>pdb|3JQ0|A Chain A, Crystal Structure Of Susd Superfamily Protein
(Yp_001299712.1) From Bacteroides Vulgatus Atcc 8482 At
1.13 A Resolution
Length = 493
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 144 YLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGV 201
Y + +G SF G L+ LQ+ FY+ ++D W + L ++ + +GV
Sbjct: 276 YCDENGNSFVGTPDAQLNGLTQLQVR--REFYFKGFRNNDTRWTTSLKAVYKKDAQGV 331
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 86/200 (43%), Gaps = 42/200 (21%)
Query: 267 KLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQ----IPKDLGS---LCNLWD 319
K+A++DL N++ F + L+ LDL +N+L IP S L L
Sbjct: 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPK 398
Query: 320 LDLSGNDL--------DGEIIEFV-------------DRLSKCA-------NSSLESLDL 351
++L+ N + + +I+ F+ +R S C+ N SLE L L
Sbjct: 399 INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458
Query: 352 GQNNLGGFLPNSLG-----QLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDG 406
G+N L L L +L++L L N P +L++LR L L++N +
Sbjct: 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL-- 516
Query: 407 TIPKSLGKLSHLVVLDISGN 426
T+ ++L +LDIS N
Sbjct: 517 TVLSHNDLPANLEILDISRN 536
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 1/113 (0%)
Query: 342 ANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHN 401
A SS+ LDL + L++LK+L L N E+ L +L+ L L
Sbjct: 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323
Query: 402 NLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLA 454
NL+ + L + +D+ N I ++ + F L+ L+ L + +L
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALT 375
>pdb|3GNM|L Chain L, The Crystal Structure Of The Jaa-f11 Monoclonal Antibody
Fab Fragment
Length = 219
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 12/110 (10%)
Query: 80 VVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSL 139
+ ++ R +PD F+ +G+ +IS D + Y F+GS +P GS
Sbjct: 53 IYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEADDLGVYYC------FQGSHVPFTFGSG 106
Query: 140 EKLRYLNLSGASFAGNIPPSFGNLSS---LQILDLNTFYYSSLESDDVEW 186
KL A PPS L+S + LN FY + +V+W
Sbjct: 107 TKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDI---NVKW 153
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Query: 320 LDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNL 379
L+L N L D+L++ L L L QN + +L L IL L N
Sbjct: 33 LELESNKLQSLPHGVFDKLTQ-----LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 380 FRGSIPESI-GNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPW 428
+ S+P + L+ L+EL L N + +L+ L + + NPW
Sbjct: 88 LQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136
>pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110
pdb|2QXL|B Chain B, Crystal Structure Analysis Of Sse1, A Yeast Hsp110
Length = 658
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 110 SVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASF-AGNIPPSFGNLSSLQI 168
SVL + +D+ +N P+ +G K RYL +G + NI + NL +
Sbjct: 13 SVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNTVANLKRIIG 72
Query: 169 LDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSL 220
LD +++ E + + S+L L G ++ AG V + L ++
Sbjct: 73 LD---YHHPDFEQESKHFTSKLVELDDKKT-GAEVRFAGEKHVFSATQLAAM 120
>pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex
Length = 668
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 110 SVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASF-AGNIPPSFGNLSSLQI 168
SVL + +D+ +N P+ +G K RYL +G + NI + NL +
Sbjct: 16 SVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNTVANLKRIIG 75
Query: 169 LDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSL 220
LD +++ E + + S+L L G ++ AG V + L ++
Sbjct: 76 LD---YHHPDFEQESKHFTSKLVELDDKKT-GAEVRFAGEKHVFSATQLAAM 123
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 8/114 (7%)
Query: 113 DLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASF-AGNIPPSFGNLSSLQILDL 171
+L HL L+LS N + F +L L+L+ + F NL L++L+L
Sbjct: 374 NLSHLQSLNLSYNEPLSLKTEAF-KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432
Query: 172 NTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHL 225
+ +S L+ + L +LQ+LNL+G K +Q TN L +L L +
Sbjct: 433 S---HSLLDISSEQLFDGLPALQHLNLQGNHFPKGN---IQKTNSLQTLGRLEI 480
>pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70
pdb|3D2F|C Chain C, Crystal Structure Of A Complex Of Sse1p And Hsp70
Length = 675
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 110 SVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASF-AGNIPPSFGNLSSLQI 168
SVL + +D+ +N P+ +G K RYL +G + NI + NL +
Sbjct: 14 SVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNTVANLKRIIG 73
Query: 169 LDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSL 220
LD +++ E + + S+L L G ++ AG V + L ++
Sbjct: 74 LD---YHHPDFEQESKHFTSKLVELDDKKT-GAEVRFAGEKHVFSATQLAAM 121
>pdb|2UYL|A Chain A, Crystal Structure Of A Monoclonal Antibody Directed
Against An Antigenic Determinant Common To Ogawa And
Inaba Serotypes Of Vibrio Cholerae O1
pdb|2UYL|M Chain M, Crystal Structure Of A Monoclonal Antibody Directed
Against An Antigenic Determinant Common To Ogawa And
Inaba Serotypes Of Vibrio Cholerae O1
pdb|2UYL|V Chain V, Crystal Structure Of A Monoclonal Antibody Directed
Against An Antigenic Determinant Common To Ogawa And
Inaba Serotypes Of Vibrio Cholerae O1
pdb|2UYL|X Chain X, Crystal Structure Of A Monoclonal Antibody Directed
Against An Antigenic Determinant Common To Ogawa And
Inaba Serotypes Of Vibrio Cholerae O1
Length = 219
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 12/110 (10%)
Query: 80 VVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSL 139
+ ++ R +PD F+ +G+ EIS + + Y F+GS +P G
Sbjct: 53 IYKVSNRFSGVPDRFSGSGSGTDFTLEISRVEAEDLGVYYC------FQGSHVPRTFGGG 106
Query: 140 EKLRYLNLSGASFAGNIPPSFGNLSS---LQILDLNTFYYSSLESDDVEW 186
KL A PPS L+S + LN FY + +V+W
Sbjct: 107 TKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDI---NVKW 153
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 57/135 (42%), Gaps = 8/135 (5%)
Query: 268 LAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDL 327
L LDLS N LQ ++P + +L LD+S N L + L L L +L L GN+L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNEL 136
Query: 328 DGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPES 387
+ K LE L L N+L L LENL L L N +IP+
Sbjct: 137 KTLPPGLLTPTPK-----LEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLY-TIPKG 190
Query: 388 IGNLSSLRELYLHNN 402
L +LH N
Sbjct: 191 FFGSHLLPFAFLHGN 205
>pdb|1TET|L Chain L, Crystal Structure Of An Anticholera Toxin Peptide Complex
At 2.3 Angstroms
Length = 216
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 11/100 (11%)
Query: 80 VVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNN-FRGSRIPNFLGS 138
+ ++ R +PD F+ +G+ L + + DL + F+GS IP GS
Sbjct: 53 IYKVSNRFSGVPDRFSGSGSGTDF-------TLKISRVEAEDLGVYYCFQGSHIPFTFGS 105
Query: 139 LEKLRYLNLSGASFAGNIPPSFGNLSS---LQILDLNTFY 175
KL A PPS L+S + LN FY
Sbjct: 106 GTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFY 145
>pdb|3MCK|L Chain L, Crystal Structure Of Anti-Beta-Amyloid Antibody C705
pdb|3MCK|A Chain A, Crystal Structure Of Anti-Beta-Amyloid Antibody C705
Length = 219
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 12/110 (10%)
Query: 80 VVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSL 139
+ ++ R +PD F+ +G+ +IS + + Y F+GSR+P G+
Sbjct: 53 IYKVSNRFSGVPDRFSGSGSGTDFTLKISSVEAEDLGVFYC------FQGSRVPLTFGAG 106
Query: 140 EKLRYLNLSGASFAGNIPPSFGNLSS---LQILDLNTFYYSSLESDDVEW 186
KL A PPS L+S + LN FY + +V+W
Sbjct: 107 TKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDI---NVKW 153
>pdb|3IFO|L Chain L, X-Ray Structure Of Amyloid Beta Peptide:antibody (Abeta1-
7:10d5) Complex
pdb|3IFO|B Chain B, X-Ray Structure Of Amyloid Beta Peptide:antibody (Abeta1-
7:10d5) Complex
Length = 219
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 14/111 (12%)
Query: 80 VVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNN-FRGSRIPNFLGS 138
+ ++ R +PD F+ +G+ L +K + DL + F+GS +P G+
Sbjct: 53 IYKVSNRFSGVPDRFSGSGSGTDF-------TLKIKKVEAEDLGIYYCFQGSHVPLTFGA 105
Query: 139 LEKLRYLNLSGASFAGNIPPSFGNLSS---LQILDLNTFYYSSLESDDVEW 186
KL A PPS L+S + LN FY + +V+W
Sbjct: 106 GTKLELERADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDI---NVKW 153
>pdb|1ZEA|L Chain L, Structure Of The Anti-Cholera Toxin Antibody Fab Fragment
Te33 In Complex With A D-Peptide
Length = 216
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 11/100 (11%)
Query: 80 VVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNN-FRGSRIPNFLGS 138
+ ++ R +PD F+ +G+ L + + DL + F+GS IP GS
Sbjct: 53 IYKVSNRFSGVPDRFSGSGSGTDF-------TLKISRVEAEDLGVYYCFQGSHIPFTFGS 105
Query: 139 LEKLRYLNLSGASFAGNIPPSFGNLSS---LQILDLNTFY 175
KL A PPS L+S + LN FY
Sbjct: 106 GTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFY 145
>pdb|1CLZ|L Chain L, Igg Fab (Igg3, Kappa) Fragment (Mbr96) Complexed With
Lewis Y Nonoate Methyl Ester
Length = 219
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 14/111 (12%)
Query: 80 VVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNN-FRGSRIPNFLGS 138
+ ++ R +PD F+ +G+ L + + DL + F+GS +P GS
Sbjct: 53 IYKVSNRFSGVPDRFSGSGSGTDF-------TLKISRVEAEDLGVYYCFQGSHVPFTFGS 105
Query: 139 LEKLRYLNLSGASFAGNIPPSFGNLSS---LQILDLNTFYYSSLESDDVEW 186
KL A PPS L+S + LN FY + +V+W
Sbjct: 106 GTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDI---NVKW 153
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 6/135 (4%)
Query: 268 LAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDL 327
+ + L N ++ P AF+ LR +DLS N I P L +L L L GN
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGN-- 90
Query: 328 DGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPES 387
+I E L + SL+ L L N + ++ L NL +L L+ N + +
Sbjct: 91 --KITELPKSLFE-GLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGT 147
Query: 388 IGNLSSLRELYLHNN 402
L +++ ++L N
Sbjct: 148 FSPLRAIQTMHLAQN 162
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 267 KLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDL 311
KL +DLS N + PDAF + SL L L N + ++PK L
Sbjct: 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT--ELPKSL 99
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 6/135 (4%)
Query: 268 LAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDL 327
+ + L N ++ P AF+ LR +DLS N I P L +L L L GN
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGN-- 90
Query: 328 DGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPES 387
+I E L + SL+ L L N + ++ L NL +L L+ N + +
Sbjct: 91 --KITELPKSLFE-GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT 147
Query: 388 IGNLSSLRELYLHNN 402
L +++ ++L N
Sbjct: 148 FSPLRAIQTMHLAQN 162
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 267 KLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDL 311
KL +DLS N + PDAF + SL L L N + ++PK L
Sbjct: 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT--ELPKSL 99
>pdb|1F3D|L Chain L, Catalytic Antibody 4b2 In Complex With Its Amidinium
Hapten.
pdb|1F3D|J Chain J, Catalytic Antibody 4b2 In Complex With Its Amidinium
Hapten
Length = 219
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
Query: 80 VVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNN-FRGSRIPNFLGS 138
+ ++ R +PD F+ +G+ L + + DL + F+GS +P G
Sbjct: 53 IYKVSKRFSGVPDRFSGSGSGTDF-------TLKISRVEAEDLGVYYCFQGSHVPYTFGG 105
Query: 139 LEKLRYLNLSGASFAGNIPPSFGNLSS---LQILDLNTFYYSSLESDDVEW 186
KL A PPS L+S + LN FY + +V+W
Sbjct: 106 GTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDI---NVKW 153
>pdb|3NZ8|B Chain B, Crystal Structure Of The Hiv-2 Neutralizing Fab Fragment
7c8
pdb|3NZ8|L Chain L, Crystal Structure Of The Hiv-2 Neutralizing Fab Fragment
7c8
Length = 218
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 11/100 (11%)
Query: 80 VVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNN-FRGSRIPNFLGS 138
+ ++ R +PD F+ +G+ L + + DL + F+GS +P GS
Sbjct: 53 IYKVSNRFSGVPDRFSGSGSGTDF-------TLKISRVEAEDLGVYYCFQGSHVPFTFGS 105
Query: 139 LEKLRYLNLSGASFAGNIPPSFGNLSS---LQILDLNTFY 175
KL A PPS L+S + LN FY
Sbjct: 106 GTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFY 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,408,645
Number of Sequences: 62578
Number of extensions: 557513
Number of successful extensions: 1843
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1298
Number of HSP's gapped (non-prelim): 338
length of query: 467
length of database: 14,973,337
effective HSP length: 102
effective length of query: 365
effective length of database: 8,590,381
effective search space: 3135489065
effective search space used: 3135489065
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)