Query 038320
Match_columns 467
No_of_seqs 419 out of 4614
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 09:48:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038320.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038320hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.4E-49 5.2E-54 432.5 34.6 401 37-455 28-442 (968)
2 PLN00113 leucine-rich repeat r 100.0 6E-41 1.3E-45 366.5 29.8 357 79-451 94-462 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.6E-36 3.5E-41 286.9 6.5 375 66-457 52-432 (873)
4 KOG4194 Membrane glycoprotein 100.0 2E-35 4.2E-40 279.6 3.5 354 79-457 53-408 (873)
5 KOG0444 Cytoskeletal regulator 100.0 3.7E-34 8E-39 273.0 -7.2 324 106-451 46-372 (1255)
6 KOG0444 Cytoskeletal regulator 100.0 1.3E-32 2.7E-37 262.5 -6.0 336 101-458 17-356 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 1.7E-29 3.7E-34 229.7 -7.2 254 187-454 202-541 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 2.4E-29 5.3E-34 228.7 -8.9 336 101-463 78-527 (565)
9 KOG0618 Serine/threonine phosp 99.9 4.6E-27 9.9E-32 234.2 1.1 204 241-451 240-486 (1081)
10 PLN03210 Resistant to P. syrin 99.9 3.6E-23 7.9E-28 227.4 27.0 316 110-452 553-904 (1153)
11 PLN03210 Resistant to P. syrin 99.9 6.8E-23 1.5E-27 225.2 25.3 300 133-454 551-883 (1153)
12 KOG0618 Serine/threonine phosp 99.9 1.9E-24 4.1E-29 215.7 -1.1 315 117-454 47-420 (1081)
13 PRK15387 E3 ubiquitin-protein 99.9 1.1E-21 2.4E-26 201.3 18.1 263 115-434 201-463 (788)
14 PRK15387 E3 ubiquitin-protein 99.9 4.5E-21 9.8E-26 196.9 18.2 257 101-414 211-467 (788)
15 PRK15370 E3 ubiquitin-protein 99.8 3.7E-20 7.9E-25 191.4 16.3 328 32-405 57-428 (754)
16 cd00116 LRR_RI Leucine-rich re 99.8 4.8E-21 1.1E-25 183.5 3.9 288 120-428 3-319 (319)
17 cd00116 LRR_RI Leucine-rich re 99.8 8.6E-21 1.9E-25 181.7 2.4 236 215-453 48-319 (319)
18 PRK15370 E3 ubiquitin-protein 99.8 1.1E-18 2.3E-23 180.6 14.7 248 140-430 178-429 (754)
19 KOG4237 Extracellular matrix p 99.8 4.9E-21 1.1E-25 174.6 -3.9 274 116-404 68-358 (498)
20 KOG4237 Extracellular matrix p 99.8 9.2E-21 2E-25 172.8 -4.9 278 142-454 69-359 (498)
21 KOG0617 Ras suppressor protein 99.7 1.9E-18 4E-23 140.4 -5.0 166 111-288 29-194 (264)
22 KOG0617 Ras suppressor protein 99.6 4.4E-18 9.5E-23 138.3 -5.1 184 239-434 30-217 (264)
23 PLN03150 hypothetical protein; 99.6 2.9E-14 6.3E-19 147.1 12.7 150 33-202 367-526 (623)
24 KOG1909 Ran GTPase-activating 99.4 3E-13 6.4E-18 122.5 2.8 189 263-453 89-310 (382)
25 KOG1909 Ran GTPase-activating 99.3 2E-13 4.2E-18 123.7 0.4 252 107-380 22-310 (382)
26 KOG3207 Beta-tubulin folding c 99.2 4.2E-12 9E-17 118.3 3.0 215 213-432 116-342 (505)
27 PLN03150 hypothetical protein; 99.2 4.6E-11 9.9E-16 123.5 9.6 107 345-452 419-526 (623)
28 KOG3207 Beta-tubulin folding c 99.2 2.4E-12 5.2E-17 119.9 -0.0 188 136-327 117-313 (505)
29 COG4886 Leucine-rich repeat (L 99.2 4.6E-11 1E-15 117.9 8.9 197 119-332 97-294 (394)
30 KOG1259 Nischarin, modulator o 99.2 5.7E-12 1.2E-16 111.9 1.7 209 234-456 206-414 (490)
31 COG4886 Leucine-rich repeat (L 99.2 4.9E-11 1.1E-15 117.7 8.4 201 143-364 96-297 (394)
32 KOG0532 Leucine-rich repeat (L 99.2 1.1E-12 2.3E-17 125.9 -4.6 174 243-431 76-249 (722)
33 PF14580 LRR_9: Leucine-rich r 99.1 2.4E-11 5.1E-16 103.3 3.7 109 112-231 16-126 (175)
34 KOG0532 Leucine-rich repeat (L 99.1 1.8E-12 4E-17 124.3 -4.8 195 217-427 74-271 (722)
35 PF14580 LRR_9: Leucine-rich r 99.1 1.1E-10 2.4E-15 99.3 5.2 61 138-205 17-78 (175)
36 KOG4658 Apoptotic ATPase [Sign 99.0 9.4E-11 2E-15 123.9 3.6 109 113-229 543-653 (889)
37 KOG1259 Nischarin, modulator o 99.0 6E-11 1.3E-15 105.5 0.9 212 104-330 203-414 (490)
38 KOG4658 Apoptotic ATPase [Sign 99.0 2.6E-10 5.6E-15 120.7 4.6 163 108-279 564-730 (889)
39 KOG0531 Protein phosphatase 1, 98.9 8.3E-11 1.8E-15 116.3 -2.0 244 112-382 69-319 (414)
40 KOG0531 Protein phosphatase 1, 98.8 5.3E-10 1.2E-14 110.6 -1.6 243 137-405 69-318 (414)
41 PF13855 LRR_8: Leucine rich r 98.8 4.3E-09 9.4E-14 73.5 3.4 59 345-403 2-60 (61)
42 PF13855 LRR_8: Leucine rich r 98.8 3.8E-09 8.2E-14 73.8 2.9 59 393-452 2-60 (61)
43 KOG2120 SCF ubiquitin ligase, 98.7 9.8E-11 2.1E-15 104.1 -8.0 181 116-326 186-374 (419)
44 COG5238 RNA1 Ran GTPase-activa 98.7 2.6E-09 5.7E-14 93.9 0.3 240 216-457 28-319 (388)
45 KOG2120 SCF ubiquitin ligase, 98.6 1.1E-09 2.4E-14 97.4 -4.2 181 266-451 185-373 (419)
46 COG5238 RNA1 Ran GTPase-activa 98.6 1.1E-08 2.4E-13 90.1 0.8 193 238-430 88-317 (388)
47 PF08263 LRRNT_2: Leucine rich 98.6 9.7E-08 2.1E-12 61.1 4.6 38 37-74 2-43 (43)
48 KOG1859 Leucine-rich repeat pr 98.5 2.2E-09 4.8E-14 106.3 -7.0 103 345-453 188-291 (1096)
49 KOG2982 Uncharacterized conser 98.5 3.1E-08 6.7E-13 88.4 0.3 84 366-449 197-287 (418)
50 KOG1859 Leucine-rich repeat pr 98.4 3.4E-09 7.5E-14 104.9 -8.2 125 292-428 166-291 (1096)
51 KOG4341 F-box protein containi 98.3 1.8E-08 4E-13 93.9 -4.4 59 115-173 138-199 (483)
52 KOG2982 Uncharacterized conser 98.3 2.6E-07 5.7E-12 82.6 2.9 226 141-375 46-286 (418)
53 KOG4341 F-box protein containi 98.3 3E-08 6.4E-13 92.5 -3.5 283 140-453 138-438 (483)
54 KOG1644 U2-associated snRNP A' 98.1 9.5E-06 2.1E-10 68.9 6.2 106 139-251 41-149 (233)
55 KOG3665 ZYG-1-like serine/thre 98.0 1.2E-06 2.5E-11 91.0 0.7 135 115-256 122-264 (699)
56 KOG3665 ZYG-1-like serine/thre 98.0 2.3E-06 5E-11 88.8 2.1 153 291-449 123-283 (699)
57 KOG4579 Leucine-rich repeat (L 98.0 2.1E-07 4.6E-12 73.7 -4.3 107 193-302 29-135 (177)
58 PF12799 LRR_4: Leucine Rich r 98.0 4.1E-06 9E-11 53.6 2.2 36 141-177 2-37 (44)
59 KOG4579 Leucine-rich repeat (L 98.0 2.5E-07 5.5E-12 73.3 -4.2 59 367-427 76-134 (177)
60 PF12799 LRR_4: Leucine Rich r 97.9 1.4E-05 3.1E-10 51.1 3.6 34 394-428 3-36 (44)
61 PRK15386 type III secretion pr 97.9 6.5E-05 1.4E-09 72.2 9.5 139 110-276 47-187 (426)
62 KOG1644 U2-associated snRNP A' 97.8 2.6E-05 5.7E-10 66.2 4.9 110 115-229 42-151 (233)
63 KOG2739 Leucine-rich acidic nu 97.7 1.6E-05 3.4E-10 70.4 2.5 113 107-224 35-149 (260)
64 PRK15386 type III secretion pr 97.7 0.00013 2.9E-09 70.1 8.2 137 262-427 48-188 (426)
65 KOG1947 Leucine rich repeat pr 97.5 3.3E-05 7.1E-10 78.4 1.0 18 363-380 357-374 (482)
66 KOG2123 Uncharacterized conser 97.3 1.3E-05 2.7E-10 71.4 -3.8 99 345-447 20-123 (388)
67 KOG2739 Leucine-rich acidic nu 97.3 0.00015 3.3E-09 64.3 2.3 104 346-451 45-153 (260)
68 KOG2123 Uncharacterized conser 97.1 1.5E-05 3.3E-10 70.9 -6.0 105 113-224 17-123 (388)
69 PF13306 LRR_5: Leucine rich r 97.1 0.0023 5E-08 51.9 7.3 37 136-173 8-44 (129)
70 KOG1947 Leucine rich repeat pr 97.1 0.00017 3.8E-09 73.0 0.7 225 216-454 186-440 (482)
71 PF13306 LRR_5: Leucine rich r 97.0 0.0021 4.5E-08 52.2 6.2 94 345-444 36-129 (129)
72 KOG4308 LRR-containing protein 96.1 0.0001 2.2E-09 73.4 -8.4 189 243-431 88-305 (478)
73 KOG4308 LRR-containing protein 95.8 0.0001 2.2E-09 73.4 -9.5 211 219-429 88-331 (478)
74 PF00560 LRR_1: Leucine Rich R 95.0 0.008 1.7E-07 31.9 0.3 19 142-161 2-20 (22)
75 PF00560 LRR_1: Leucine Rich R 94.9 0.011 2.5E-07 31.3 0.8 11 395-405 3-13 (22)
76 PF13504 LRR_7: Leucine rich r 92.6 0.074 1.6E-06 26.1 1.2 11 142-152 3-13 (17)
77 KOG3864 Uncharacterized conser 91.6 0.056 1.2E-06 46.5 0.1 33 345-377 152-185 (221)
78 KOG3864 Uncharacterized conser 91.0 0.04 8.6E-07 47.4 -1.3 83 345-427 102-187 (221)
79 PF13516 LRR_6: Leucine Rich r 91.0 0.068 1.5E-06 28.9 0.0 18 392-409 2-19 (24)
80 PF13516 LRR_6: Leucine Rich r 90.0 0.14 3.1E-06 27.5 0.8 21 315-335 2-22 (24)
81 smart00370 LRR Leucine-rich re 88.5 0.32 6.9E-06 26.7 1.6 18 164-181 2-19 (26)
82 smart00369 LRR_TYP Leucine-ric 88.5 0.32 6.9E-06 26.7 1.6 18 164-181 2-19 (26)
83 KOG0473 Leucine-rich repeat pr 88.5 0.0095 2.1E-07 52.2 -7.0 88 110-204 37-124 (326)
84 KOG0473 Leucine-rich repeat pr 85.2 0.014 3.1E-07 51.1 -7.6 59 368-428 65-123 (326)
85 KOG4242 Predicted myosin-I-bin 84.0 5.6 0.00012 39.1 8.2 16 193-208 216-231 (553)
86 smart00364 LRR_BAC Leucine-ric 79.0 1.5 3.2E-05 24.2 1.4 20 441-460 2-21 (26)
87 smart00368 LRR_RI Leucine rich 78.2 2.3 5.1E-05 23.8 2.2 23 315-337 2-24 (28)
88 smart00365 LRR_SD22 Leucine-ri 69.1 4.3 9.4E-05 22.4 1.8 14 441-454 2-15 (26)
89 KOG3763 mRNA export factor TAP 62.8 4.9 0.00011 40.3 2.0 89 366-457 216-315 (585)
90 PF07172 GRP: Glycine rich pro 62.5 5.8 0.00012 30.0 1.9 21 10-30 7-27 (95)
91 KOG3763 mRNA export factor TAP 61.8 3.5 7.6E-05 41.3 0.9 15 192-206 271-285 (585)
92 smart00367 LRR_CC Leucine-rich 52.2 13 0.00028 20.2 1.8 12 416-427 2-13 (26)
93 KOG4242 Predicted myosin-I-bin 31.6 1.2E+02 0.0025 30.4 5.8 66 242-310 165-233 (553)
94 TIGR00864 PCC polycystin catio 23.3 55 0.0012 40.1 2.4 33 374-406 1-33 (2740)
95 PF02950 Conotoxin: Conotoxin; 20.5 50 0.0011 23.5 0.9 11 58-68 57-67 (75)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.4e-49 Score=432.55 Aligned_cols=401 Identities=35% Similarity=0.524 Sum_probs=328.3
Q ss_pred HhhHHHHHHhHhcCCCCCCCCCCCC-CCCCCCcccEEecCCCCCEEEEEcCCCCCC-----------CCcCCCCcccccc
Q 038320 37 QNEKEALLKIKASVTDPSGRLSSWT-GEDCCKWEGVICDNSTGKVVQLKLRSPEIP-----------DSFTDNGTTYQLE 104 (467)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~~~w~-~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~-----------~~~~~~~~~~~l~ 104 (467)
+.|+.+|++||+.+.+|.+.+.+|+ +.+||.|.||+|+. .++|+.+++++..+. ..+.+++++|.++
T Consensus 28 ~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~ 106 (968)
T PLN00113 28 AEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS 106 (968)
T ss_pred HHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC
Confidence 4789999999999988887889994 67899999999975 579999999985432 2356677777777
Q ss_pred cccCcccc-CCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCC-CCCC
Q 038320 105 GEISPSVL-DLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSS-LESD 182 (467)
Q Consensus 105 ~~~~~~l~-~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~-l~~~ 182 (467)
|.+|..+. .+++|++|++++|.+++. +|. +.+++|++|++++|.+++.+|..++++++|++|++++|.+.. +|..
T Consensus 107 ~~ip~~~~~~l~~L~~L~Ls~n~l~~~-~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 183 (968)
T PLN00113 107 GPIPDDIFTTSSSLRYLNLSNNNFTGS-IPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183 (968)
T ss_pred CcCChHHhccCCCCCEEECcCCccccc-cCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh
Confidence 77776654 777888888887777765 553 457778888888888877778778888888888888887653 3332
Q ss_pred ChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhc
Q 038320 183 DVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWL 262 (467)
Q Consensus 183 ~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 262 (467)
+.++++|++|++++|.+.+.. +..+..+++|+.|++++|.+.+..|..+.++++|++|++++|.+++.+|..+
T Consensus 184 ----~~~l~~L~~L~L~~n~l~~~~---p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 256 (968)
T PLN00113 184 ----LTNLTSLEFLTLASNQLVGQI---PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL 256 (968)
T ss_pred ----hhhCcCCCeeeccCCCCcCcC---ChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH
Confidence 677888888888888877665 3467778888888888888888888888888888888888888888888888
Q ss_pred cCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhccc
Q 038320 263 LNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCA 342 (467)
Q Consensus 263 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~ 342 (467)
.++++|+.|++++|.+.+.+|..+.++++|++|++++|.+ .+.+|..+..+++|+.|++++|.+.+..|..+..++
T Consensus 257 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l-~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~--- 332 (968)
T PLN00113 257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL-SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP--- 332 (968)
T ss_pred hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee-ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCC---
Confidence 8888888888888888888888888888888888888887 677888888888888888888888888887777665
Q ss_pred CCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEe
Q 038320 343 NSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLD 422 (467)
Q Consensus 343 ~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 422 (467)
+|+.|++++|.+++.+|..++.+++|+.|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+
T Consensus 333 --~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ 410 (968)
T PLN00113 333 --RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVR 410 (968)
T ss_pred --CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEE
Confidence 888999998888888888888888899999999988888888888888899999999998888888888999999999
Q ss_pred CcCCCCcccCChhhhCCCCCCCEEeccCCCCCC
Q 038320 423 ISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAP 455 (467)
Q Consensus 423 l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~ 455 (467)
+++|++++.+|. .|..++.|+.+++++|+++.
T Consensus 411 L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~ 442 (968)
T PLN00113 411 LQDNSFSGELPS-EFTKLPLVYFLDISNNNLQG 442 (968)
T ss_pred CcCCEeeeECCh-hHhcCCCCCEEECcCCcccC
Confidence 999999888888 78889999999999995553
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6e-41 Score=366.51 Aligned_cols=357 Identities=33% Similarity=0.449 Sum_probs=262.4
Q ss_pred CEEEEEcCCCCCC------------CCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEE
Q 038320 79 KVVQLKLRSPEIP------------DSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLN 146 (467)
Q Consensus 79 ~v~~l~l~~~~~~------------~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~ 146 (467)
+++.++++++.+. ..+.+++++|.+++.+|. +.+++|++|++++|.+++. +|..++++++|++|+
T Consensus 94 ~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~ 170 (968)
T PLN00113 94 YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVLD 170 (968)
T ss_pred CCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCccccc-CChHHhcCCCCCEEE
Confidence 5677888765432 125677777888877775 4578888888888888765 777788888888888
Q ss_pred cCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECC
Q 038320 147 LSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLP 226 (467)
Q Consensus 147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~ 226 (467)
+++|.+.+.+|..+.++++|++|++++|.+....+. .+.++++|++|++++|.+.+..+ ..+..+++|++|+++
T Consensus 171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~ 244 (968)
T PLN00113 171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR---ELGQMKSLKWIYLGYNNLSGEIP---YEIGGLTSLNHLDLV 244 (968)
T ss_pred CccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh---HHcCcCCccEEECcCCccCCcCC---hhHhcCCCCCEEECc
Confidence 888888777888888888888888888876543222 26777888888888887776553 356777788888888
Q ss_pred CCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCC
Q 038320 227 ACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQ 306 (467)
Q Consensus 227 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 306 (467)
+|.+.+..|..+.++++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+.+|..+.++++|+.|++++|.+ .+.
T Consensus 245 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~-~~~ 323 (968)
T PLN00113 245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF-TGK 323 (968)
T ss_pred CceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc-CCc
Confidence 8887777777777788888888888877777777777777888888888877777777777777788888877777 666
Q ss_pred CcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccc
Q 038320 307 IPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPE 386 (467)
Q Consensus 307 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 386 (467)
.|..+..+++|+.|++++|.+.+..|..+.... +|+.|++++|++++.+|..+..+++|+.|++++|.+.+.+|.
T Consensus 324 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~-----~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~ 398 (968)
T PLN00113 324 IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-----NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK 398 (968)
T ss_pred CChhHhcCCCCCEEECcCCCCcCcCChHHhCCC-----CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH
Confidence 777777777777777777777777777666654 677777777777766676666667777777777777766666
Q ss_pred cccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCC
Q 038320 387 SIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKY 451 (467)
Q Consensus 387 ~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n 451 (467)
.+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.++. .+..+++|+.|++++|
T Consensus 399 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~n 462 (968)
T PLN00113 399 SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS-RKWDMPSLQMLSLARN 462 (968)
T ss_pred HHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccCh-hhccCCCCcEEECcCc
Confidence 666677777777777777666666666677777777777776666665 4556666666666666
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-36 Score=286.92 Aligned_cols=375 Identities=23% Similarity=0.247 Sum_probs=314.3
Q ss_pred CCcccEEecCCCCCEEEEE---cCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCC
Q 038320 66 CKWEGVICDNSTGKVVQLK---LRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKL 142 (467)
Q Consensus 66 c~w~gv~c~~~~~~v~~l~---l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L 142 (467)
|.-.-..|+. .++..++ +.+...+..+.+++++|.++..-+..|.++++|+.+++..|.++ .+|...+...+|
T Consensus 52 c~~~lldcs~--~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt--~IP~f~~~sghl 127 (873)
T KOG4194|consen 52 CNTRLLDCSD--RELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT--RIPRFGHESGHL 127 (873)
T ss_pred CCceeeecCc--cccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh--hcccccccccce
Confidence 4434455543 2333333 23333333456777779999998899999999999999999998 689988888999
Q ss_pred CEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCE
Q 038320 143 RYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSE 222 (467)
Q Consensus 143 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~ 222 (467)
+.|+|.+|.|+..-.+.+.-++.|+.||++.|.++.++... +..-.++++|+|++|.++..... .+..+.+|..
T Consensus 128 ~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~s---fp~~~ni~~L~La~N~It~l~~~---~F~~lnsL~t 201 (873)
T KOG4194|consen 128 EKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPS---FPAKVNIKKLNLASNRITTLETG---HFDSLNSLLT 201 (873)
T ss_pred eEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCC---CCCCCCceEEeeccccccccccc---cccccchhee
Confidence 99999999998666677889999999999999999988765 66778999999999999988744 6777889999
Q ss_pred EECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCC
Q 038320 223 LHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSL 302 (467)
Q Consensus 223 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 302 (467)
|.++.|+++..++..|.++++|+.|++..|++.-.--..|.++++|+.|.+..|.+...-...|-.+.++++|+|+.|++
T Consensus 202 lkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 202 LKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred eecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence 99999999999999999999999999999998754456788999999999999999876677788899999999999998
Q ss_pred CCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcc
Q 038320 303 IGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRG 382 (467)
Q Consensus 303 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~ 382 (467)
...-..++.++.+|+.|++++|.+...-++.+.-.. +|++|+|++|+|+...+..|..+..|++|+|+.|.+..
T Consensus 282 -~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq-----kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~ 355 (873)
T KOG4194|consen 282 -QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ-----KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH 355 (873)
T ss_pred -hhhhcccccccchhhhhccchhhhheeecchhhhcc-----cceeEeccccccccCChhHHHHHHHhhhhcccccchHH
Confidence 555666888999999999999998877777766555 89999999999998888899999999999999999985
Q ss_pred cccccccCCCCCCEEECcCCcCcccC---hhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCCCCc
Q 038320 383 SIPESIGNLSSLRELYLHNNLMDGTI---PKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRL 457 (467)
Q Consensus 383 ~~~~~l~~~~~L~~L~Ls~n~l~~~~---p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~ 457 (467)
.-...|..+.+|++|||++|.++..+ ...+..+++|+.|++.+|++- .|+...|.+++.|+.|||.+|.|.+..
T Consensus 356 l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq 432 (873)
T KOG4194|consen 356 LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQ 432 (873)
T ss_pred HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeec
Confidence 55556888999999999999886543 356778999999999999955 566668999999999999999876443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2e-35 Score=279.59 Aligned_cols=354 Identities=25% Similarity=0.256 Sum_probs=302.5
Q ss_pred CEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCc
Q 038320 79 KVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPP 158 (467)
Q Consensus 79 ~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~ 158 (467)
+...+|.++..++. .+...+.|.+|. .-+.|++++|+++.. -+..|.++++|+.+++..|.++ .+|.
T Consensus 53 ~~~lldcs~~~lea-----~~~~~l~g~lp~------~t~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt-~IP~ 119 (873)
T KOG4194|consen 53 NTRLLDCSDRELEA-----IDKSRLKGFLPS------QTQTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELT-RIPR 119 (873)
T ss_pred CceeeecCcccccc-----ccccccCCcCcc------ceeeeeccccccccC-cHHHHhcCCcceeeeeccchhh-hccc
Confidence 45566777643322 112334555554 457799999999976 6778899999999999999998 8998
Q ss_pred cCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccc
Q 038320 159 SFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSV 238 (467)
Q Consensus 159 ~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l 238 (467)
......+|+.|++.+|.++++..+. +..++.|+.|||+.|.++.... ..+..-.++++|++++|+++......|
T Consensus 120 f~~~sghl~~L~L~~N~I~sv~se~---L~~l~alrslDLSrN~is~i~~---~sfp~~~ni~~L~La~N~It~l~~~~F 193 (873)
T KOG4194|consen 120 FGHESGHLEKLDLRHNLISSVTSEE---LSALPALRSLDLSRNLISEIPK---PSFPAKVNIKKLNLASNRITTLETGHF 193 (873)
T ss_pred ccccccceeEEeeeccccccccHHH---HHhHhhhhhhhhhhchhhcccC---CCCCCCCCceEEeeccccccccccccc
Confidence 7777778999999999999887765 7889999999999999988753 355666789999999999999999999
Q ss_pred cCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCC
Q 038320 239 VNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLW 318 (467)
Q Consensus 239 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~ 318 (467)
..+.+|..|.++.|+++...+..|.++++|+.|+|..|++.-.--..|.++++|+.|.|..|.+ ..--...|..+.+++
T Consensus 194 ~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I-~kL~DG~Fy~l~kme 272 (873)
T KOG4194|consen 194 DSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI-SKLDDGAFYGLEKME 272 (873)
T ss_pred cccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc-ccccCcceeeecccc
Confidence 9999999999999999976667788899999999999999744455689999999999999998 666666788999999
Q ss_pred EEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEE
Q 038320 319 DLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELY 398 (467)
Q Consensus 319 ~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ 398 (467)
.|+++.|++....-.++..++ +|+.|++++|.|...-++.+..+++|+.|+|++|.++..-+.+|..+..|++|+
T Consensus 273 ~l~L~~N~l~~vn~g~lfgLt-----~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~Ln 347 (873)
T KOG4194|consen 273 HLNLETNRLQAVNEGWLFGLT-----SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELN 347 (873)
T ss_pred eeecccchhhhhhcccccccc-----hhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhc
Confidence 999999999877667777766 899999999999988888889999999999999999987788899999999999
Q ss_pred CcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChh--hhCCCCCCCEEeccCCCCCCCc
Q 038320 399 LHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEV--HFSKLKNLKELHIAKYSLAPRL 457 (467)
Q Consensus 399 Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~--~~~~l~~L~~l~l~~n~i~~~~ 457 (467)
|++|.++-.--..|..+++|++|||+.|.+++.|.+. .|..+++|+.|.+.+|+|...+
T Consensus 348 Ls~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~ 408 (873)
T KOG4194|consen 348 LSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP 408 (873)
T ss_pred ccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc
Confidence 9999998666677889999999999999999877543 6889999999999999998655
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=3.7e-34 Score=272.96 Aligned_cols=324 Identities=28% Similarity=0.371 Sum_probs=216.3
Q ss_pred ccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCC-CCCccCCCCCcCCeeeccCccCCCCCCCCh
Q 038320 106 EISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAG-NIPPSFGNLSSLQILDLNTFYYSSLESDDV 184 (467)
Q Consensus 106 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~ 184 (467)
.+|+.++.+.+|++|.+++|++. .+-..+..++.|+.+.++.|++.. -+|..+.++..|..||+++|+++.+|..
T Consensus 46 ~vPeEL~~lqkLEHLs~~HN~L~--~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~-- 121 (1255)
T KOG0444|consen 46 QVPEELSRLQKLEHLSMAHNQLI--SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTN-- 121 (1255)
T ss_pred hChHHHHHHhhhhhhhhhhhhhH--hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchh--
Confidence 34555555555555555555544 233444555555555555555532 2455555566666666666666555554
Q ss_pred hhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccC
Q 038320 185 EWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLN 264 (467)
Q Consensus 185 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 264 (467)
+...+++-+|+|++|++...+. +.+.+++.|-.|++++|++...+| .+..+..|++|.+++|.+...-...+..
T Consensus 122 --LE~AKn~iVLNLS~N~IetIPn---~lfinLtDLLfLDLS~NrLe~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQLPs 195 (1255)
T KOG0444|consen 122 --LEYAKNSIVLNLSYNNIETIPN---SLFINLTDLLFLDLSNNRLEMLPP-QIRRLSMLQTLKLSNNPLNHFQLRQLPS 195 (1255)
T ss_pred --hhhhcCcEEEEcccCccccCCc---hHHHhhHhHhhhccccchhhhcCH-HHHHHhhhhhhhcCCChhhHHHHhcCcc
Confidence 5555666666666666555442 234445555566666666554433 4555566666666666554322233344
Q ss_pred CCCCCEEeccCCccc-cccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccC
Q 038320 265 ISKLAHLDLSANNLQ-GNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCAN 343 (467)
Q Consensus 265 l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~ 343 (467)
+++|+.|++++.+-+ ..+|..+..+.+|..+|++.|.+ ..+|+.+.++++|+.|++++|.++.. ....+.+.
T Consensus 196 mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L--p~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~---- 268 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL--PIVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWE---- 268 (1255)
T ss_pred chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC--CcchHHHhhhhhhheeccCcCceeee-eccHHHHh----
Confidence 556666666655443 34677777788888888888887 56778888888888888888887742 22233333
Q ss_pred CCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCc-ccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEe
Q 038320 344 SSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFR-GSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLD 422 (467)
Q Consensus 344 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 422 (467)
+|++|+++.|+++ .+|+++.+++.|+.|++.+|+++ +.+|..++.+..|+.+..++|.+. .+|+.++.|++|+.|.
T Consensus 269 -~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~ 345 (1255)
T KOG0444|consen 269 -NLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLK 345 (1255)
T ss_pred -hhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhc
Confidence 7888888888888 67888888899999999888876 357888888889999999988886 8899999999999999
Q ss_pred CcCCCCcccCChhhhCCCCCCCEEeccCC
Q 038320 423 ISGNPWIGLVTEVHFSKLKNLKELHIAKY 451 (467)
Q Consensus 423 l~~n~~~~~~~~~~~~~l~~L~~l~l~~n 451 (467)
|+.|++.+ +|+ .+--++.|+.||+.+|
T Consensus 346 L~~NrLiT-LPe-aIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 346 LDHNRLIT-LPE-AIHLLPDLKVLDLREN 372 (1255)
T ss_pred ccccceee-chh-hhhhcCCcceeeccCC
Confidence 99999775 555 5666899999999998
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.3e-32 Score=262.54 Aligned_cols=336 Identities=27% Similarity=0.398 Sum_probs=245.4
Q ss_pred cccc-cccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCC--
Q 038320 101 YQLE-GEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYS-- 177 (467)
Q Consensus 101 ~~l~-~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~-- 177 (467)
|.++ +..|..+..++.+++|.|...++. .+|..++.+.+|++|.+++|++. .+-..+..++.|+.+++++|++.
T Consensus 17 NDFsg~~FP~~v~qMt~~~WLkLnrt~L~--~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKns 93 (1255)
T KOG0444|consen 17 NDFSGDRFPHDVEQMTQMTWLKLNRTKLE--QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNS 93 (1255)
T ss_pred CcCCCCcCchhHHHhhheeEEEechhhhh--hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccC
Confidence 6676 456777778888888888777776 47778888888888888888776 44445677778888888877765
Q ss_pred CCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCC
Q 038320 178 SLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSS 257 (467)
Q Consensus 178 ~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 257 (467)
.+|.+ +..+..|..|+|++|++...+ ..+..-+++-.|++++|++..++...+.+++.|-.||+++|++. .
T Consensus 94 GiP~d----iF~l~dLt~lDLShNqL~EvP----~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~ 164 (1255)
T KOG0444|consen 94 GIPTD----IFRLKDLTILDLSHNQLREVP----TNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-M 164 (1255)
T ss_pred CCCch----hcccccceeeecchhhhhhcc----hhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-h
Confidence 45555 677788888888888777663 35666677777888888887777777777888888888888776 5
Q ss_pred cchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHh
Q 038320 258 IPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDR 337 (467)
Q Consensus 258 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 337 (467)
+|..+..+..|++|.|++|.+...--..+..+++|++|.+++.+-+-..+|..+..+.+|..+|++.|.+. ..|+.+..
T Consensus 165 LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~ 243 (1255)
T KOG0444|consen 165 LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK 243 (1255)
T ss_pred cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhh
Confidence 66667777788888888887764333444556677777777776655677777777788888888887776 45666666
Q ss_pred hhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcc-cChhhhcCCC
Q 038320 338 LSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDG-TIPKSLGKLS 416 (467)
Q Consensus 338 ~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~-~~p~~l~~l~ 416 (467)
+. +|+.|+|++|+|+ .+....+...+|++|+++.|+++ .+|..++.+++|+.|.+.+|+++- -+|..++++.
T Consensus 244 l~-----~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~ 316 (1255)
T KOG0444|consen 244 LR-----NLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI 316 (1255)
T ss_pred hh-----hhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence 65 7888888888877 33445556677888888888887 777888888888888888887753 3777788888
Q ss_pred CCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCCCCcc
Q 038320 417 HLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRLT 458 (467)
Q Consensus 417 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~ 458 (467)
+|+++...+|. .+.+|+ .+..|..|+.|.|+.|++.+.+.
T Consensus 317 ~Levf~aanN~-LElVPE-glcRC~kL~kL~L~~NrLiTLPe 356 (1255)
T KOG0444|consen 317 QLEVFHAANNK-LELVPE-GLCRCVKLQKLKLDHNRLITLPE 356 (1255)
T ss_pred hhHHHHhhccc-cccCch-hhhhhHHHHHhcccccceeechh
Confidence 88888887776 456676 67778888888888887665443
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=1.7e-29 Score=229.68 Aligned_cols=254 Identities=27% Similarity=0.391 Sum_probs=147.4
Q ss_pred cCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCC
Q 038320 187 LSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNIS 266 (467)
Q Consensus 187 l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 266 (467)
++.+.+|+.|++..|++...+ ++.++..|++++++.|++.-.+.+...+++++..||+++|++. +.|+.+..++
T Consensus 202 lg~l~~L~~LyL~~Nki~~lP-----ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLr 275 (565)
T KOG0472|consen 202 LGGLESLELLYLRRNKIRFLP-----EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLR 275 (565)
T ss_pred hcchhhhHHHHhhhcccccCC-----CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhh
Confidence 444444444444444444332 4555555666666655555544444456666777777777665 5666666666
Q ss_pred CCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCC------------------------------------CCCc--
Q 038320 267 KLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIG------------------------------------GQIP-- 308 (467)
Q Consensus 267 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~------------------------------------~~~~-- 308 (467)
+|..||+++|.++ .+|..++++ +|+.|.+.+|.+-+ ...+
T Consensus 276 sL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~ 353 (565)
T KOG0472|consen 276 SLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSE 353 (565)
T ss_pred hhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCC
Confidence 7777777777666 455566666 67777777665300 0000
Q ss_pred --ccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCC-----------------------cCCCcc
Q 038320 309 --KDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLG-----------------------GFLPNS 363 (467)
Q Consensus 309 --~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~-----------------------~~~~~~ 363 (467)
.......+.+.|++++-+++..+.+.|...... -.+..++++|++. +.+|..
T Consensus 354 ~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~---~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~ 430 (565)
T KOG0472|consen 354 SFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSE---IVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLE 430 (565)
T ss_pred cccchhhhhhhhhhcccccccccCCHHHHHHhhhc---ceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHH
Confidence 011222345555555555554333333222100 1223333333221 134445
Q ss_pred ccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCc-----------------------ccChhhhcCCCCCCE
Q 038320 364 LGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMD-----------------------GTIPKSLGKLSHLVV 420 (467)
Q Consensus 364 l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~-----------------------~~~p~~l~~l~~L~~ 420 (467)
++.+++|..|++++|.+. .+|..++.+..|+.|+++.|++. ...|+.+.++.+|++
T Consensus 431 l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred HHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 556667777777776665 56666666666777777766543 223444778899999
Q ss_pred EeCcCCCCcccCChhhhCCCCCCCEEeccCCCCC
Q 038320 421 LDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLA 454 (467)
Q Consensus 421 L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~ 454 (467)
||+.+|.+. .+|. .++++++|+.|++++|++.
T Consensus 510 LDL~nNdlq-~IPp-~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 510 LDLQNNDLQ-QIPP-ILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred eccCCCchh-hCCh-hhccccceeEEEecCCccC
Confidence 999999866 4666 6899999999999999765
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=2.4e-29 Score=228.68 Aligned_cols=336 Identities=28% Similarity=0.388 Sum_probs=253.6
Q ss_pred cccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCC
Q 038320 101 YQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLE 180 (467)
Q Consensus 101 ~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~ 180 (467)
|.++ +.|++++++..++.++.++|+++ .+|..++.+..|+.|+.++|.+. .+|+.++.+..|+.++..+|++.++|
T Consensus 78 n~l~-~lp~aig~l~~l~~l~vs~n~ls--~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp 153 (565)
T KOG0472|consen 78 NKLS-QLPAAIGELEALKSLNVSHNKLS--ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISSLP 153 (565)
T ss_pred chhh-hCCHHHHHHHHHHHhhcccchHh--hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccccCc
Confidence 6554 56778899999999999999887 58999999999999999999988 77888999999999999999999888
Q ss_pred CCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcch
Q 038320 181 SDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQ 260 (467)
Q Consensus 181 ~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 260 (467)
.+ +.++.+|..+++.+|.+....+ ....++.|++|+...|-++.. |..++.+.+|+-|++..|++. .+|
T Consensus 154 ~~----~~~~~~l~~l~~~~n~l~~l~~----~~i~m~~L~~ld~~~N~L~tl-P~~lg~l~~L~~LyL~~Nki~-~lP- 222 (565)
T KOG0472|consen 154 ED----MVNLSKLSKLDLEGNKLKALPE----NHIAMKRLKHLDCNSNLLETL-PPELGGLESLELLYLRRNKIR-FLP- 222 (565)
T ss_pred hH----HHHHHHHHHhhccccchhhCCH----HHHHHHHHHhcccchhhhhcC-ChhhcchhhhHHHHhhhcccc-cCC-
Confidence 87 7888899999999999888764 333488999999988877665 447899999999999999987 666
Q ss_pred hccCCCCCCEEeccCCccccccchhh-hCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhh
Q 038320 261 WLLNISKLAHLDLSANNLQGNIPDAF-ANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLS 339 (467)
Q Consensus 261 ~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~ 339 (467)
.|.++..|++++++.|++. .+|... .+++++..||+.+|++ ...|..+.-+.+|+.||+++|.+++- |..++.+
T Consensus 223 ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNkl--ke~Pde~clLrsL~rLDlSNN~is~L-p~sLgnl- 297 (565)
T KOG0472|consen 223 EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKL--KEVPDEICLLRSLERLDLSNNDISSL-PYSLGNL- 297 (565)
T ss_pred CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccc--ccCchHHHHhhhhhhhcccCCccccC-Ccccccc-
Confidence 6889999999999999988 566655 4899999999999998 78899999999999999999999864 3344444
Q ss_pred cccCCCccEEECcCCC----------------------------------------------------------------
Q 038320 340 KCANSSLESLDLGQNN---------------------------------------------------------------- 355 (467)
Q Consensus 340 ~~~~~~L~~L~L~~n~---------------------------------------------------------------- 355 (467)
.|+.|-+.+|.
T Consensus 298 -----hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~ 372 (565)
T KOG0472|consen 298 -----HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK 372 (565)
T ss_pred -----eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc
Confidence 24444444443
Q ss_pred -CCcCCCccccCC---CCCCEEEccCCcCc-----------------------ccccccccCCCCCCEEECcCCcCcccC
Q 038320 356 -LGGFLPNSLGQL---ENLKILQLWGNLFR-----------------------GSIPESIGNLSSLRELYLHNNLMDGTI 408 (467)
Q Consensus 356 -i~~~~~~~l~~l---~~L~~L~l~~n~l~-----------------------~~~~~~l~~~~~L~~L~Ls~n~l~~~~ 408 (467)
++. +|+.+... .-...++++.|++. +.+|..++.+++|..|+|++|.+. .+
T Consensus 373 qlt~-VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~L 450 (565)
T KOG0472|consen 373 QLTL-VPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DL 450 (565)
T ss_pred cccc-CCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hc
Confidence 221 11111000 11344555555443 123344556677888888877775 67
Q ss_pred hhhhcCCCCCCEEeCcCCCC----------------------cccCChhhhCCCCCCCEEeccCCCCCCCccEEEec
Q 038320 409 PKSLGKLSHLVVLDISGNPW----------------------IGLVTEVHFSKLKNLKELHIAKYSLAPRLTLVFNV 463 (467)
Q Consensus 409 p~~l~~l~~L~~L~l~~n~~----------------------~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~g~~ 463 (467)
|..+..+..|+.|+++.|+| .+.++...+.++..|..|||.+|.|...+...|..
T Consensus 451 P~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~Lgnm 527 (565)
T KOG0472|consen 451 PEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNM 527 (565)
T ss_pred chhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccc
Confidence 87778888888888888866 23455535777788888888888887777666553
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.93 E-value=4.6e-27 Score=234.17 Aligned_cols=204 Identities=31% Similarity=0.424 Sum_probs=131.3
Q ss_pred CCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEE
Q 038320 241 FSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDL 320 (467)
Q Consensus 241 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 320 (467)
..+|++++++.|+++ .+|+|+..+.+|+.+....|.++ .+|..+...++|+.|++..|.+ ..+|..+..+++|++|
T Consensus 240 p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel--~yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNEL--EYIPPFLEGLKSLRTL 315 (1081)
T ss_pred cccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhh--hhCCCcccccceeeee
Confidence 367899999999987 56799999999999999999985 7777888888888888888887 6677777788888999
Q ss_pred eccCCcCCCchhhHHHhhh--------------------cccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcC
Q 038320 321 DLSGNDLDGEIIEFVDRLS--------------------KCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLF 380 (467)
Q Consensus 321 ~l~~n~l~~~~~~~l~~~~--------------------~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l 380 (467)
++..|++...++.++.... ....+.|+.|++.+|.+++..-..+.++++|+.|+|++|.+
T Consensus 316 dL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 316 DLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL 395 (1081)
T ss_pred eehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence 9988887754443322211 01122455555556655555445555555666666666655
Q ss_pred ccccccc-ccCCCCCCEEECcCCcCcccChhh----------------------hcCCCCCCEEeCcCCCCcccCChhhh
Q 038320 381 RGSIPES-IGNLSSLRELYLHNNLMDGTIPKS----------------------LGKLSHLVVLDISGNPWIGLVTEVHF 437 (467)
Q Consensus 381 ~~~~~~~-l~~~~~L~~L~Ls~n~l~~~~p~~----------------------l~~l~~L~~L~l~~n~~~~~~~~~~~ 437 (467)
. .+|+. +.++..|++|+||+|+++ .+|.. +..++.|+.+|++.|.++........
T Consensus 396 ~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 396 N-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEAL 473 (1081)
T ss_pred c-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhC
Confidence 5 33332 445555555555555554 34444 45556666666666666543332112
Q ss_pred CCCCCCCEEeccCC
Q 038320 438 SKLKNLKELHIAKY 451 (467)
Q Consensus 438 ~~l~~L~~l~l~~n 451 (467)
.-+.|++||+++|
T Consensus 474 -p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 474 -PSPNLKYLDLSGN 486 (1081)
T ss_pred -CCcccceeeccCC
Confidence 1256666666666
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=3.6e-23 Score=227.40 Aligned_cols=316 Identities=24% Similarity=0.315 Sum_probs=178.6
Q ss_pred cccCCCCCCEEeCCCCCCCC-----CCCCcccCCCC-CCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCC
Q 038320 110 SVLDLKHLNYLDLSLNNFRG-----SRIPNFLGSLE-KLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDD 183 (467)
Q Consensus 110 ~l~~l~~L~~L~L~~n~i~~-----~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~ 183 (467)
+|..+++|++|.+..+.... ..+|..+..++ +|+.|++.++.+. .+|..+ ...+|+.|++++|.+..++..
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L~~~- 629 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKLWDG- 629 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccccccc-
Confidence 34555566666554432110 01344444332 3555555555544 444444 345555555555555544433
Q ss_pred hhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhcc
Q 038320 184 VEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLL 263 (467)
Q Consensus 184 ~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 263 (467)
+..+++|+.|+++++......+ .+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+
T Consensus 630 ---~~~l~~Lk~L~Ls~~~~l~~ip----~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i- 701 (1153)
T PLN03210 630 ---VHSLTGLRNIDLRGSKNLKEIP----DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI- 701 (1153)
T ss_pred ---cccCCCCCEEECCCCCCcCcCC----ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-
Confidence 4455555555555543322221 24445555555555555444445555555555555555554334444433
Q ss_pred CCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccc------------------------------cC
Q 038320 264 NISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDL------------------------------GS 313 (467)
Q Consensus 264 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l------------------------------~~ 313 (467)
++++|+.|++++|...+.+|.. .++|+.|++++|.+ ..+|..+ ..
T Consensus 702 ~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i--~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~ 776 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAI--EEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTML 776 (1153)
T ss_pred CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcc--ccccccccccccccccccccchhhccccccccchhhhhc
Confidence 4555555555555433333321 23444555555443 1222211 12
Q ss_pred CCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCC
Q 038320 314 LCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSS 393 (467)
Q Consensus 314 l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~ 393 (467)
.++|+.|++++|...+.+|..+..++ +|+.|++++|..-+.+|..+ .+++|+.|++++|.....+|.. .++
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~-----~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~n 847 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLH-----KLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STN 847 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCC-----CCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccc
Confidence 34667777777666666666666554 67777777765444555544 5677777777776655455542 356
Q ss_pred CCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCC
Q 038320 394 LRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYS 452 (467)
Q Consensus 394 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~ 452 (467)
|+.|+|++|.++ .+|..+..+++|+.|++++|+-...++. .+..+++|+.+++++|.
T Consensus 848 L~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~-~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 848 ISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSL-NISKLKHLETVDFSDCG 904 (1153)
T ss_pred cCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCc-ccccccCCCeeecCCCc
Confidence 788888888886 6788888899999999998776667777 57788888888988884
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=6.8e-23 Score=225.25 Aligned_cols=300 Identities=24% Similarity=0.272 Sum_probs=236.6
Q ss_pred CcccCCCCCCCEEEcCCCc------CCCCCCccCCCCC-cCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCC
Q 038320 133 PNFLGSLEKLRYLNLSGAS------FAGNIPPSFGNLS-SLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSK 205 (467)
Q Consensus 133 ~~~~~~l~~L~~L~L~~n~------l~~~~p~~l~~l~-~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 205 (467)
+..|.+|++|+.|.+..+. +...+|..+..++ +|+.|.+.++++..+|.. + ...+|+.|++.++.+..
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~----f-~~~~L~~L~L~~s~l~~ 625 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN----F-RPENLVKLQMQGSKLEK 625 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc----C-CccCCcEEECcCccccc
Confidence 4568889999999997653 2335677777765 699999999999988876 3 46899999999998876
Q ss_pred CCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchh
Q 038320 206 AGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDA 285 (467)
Q Consensus 206 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 285 (467)
.. ..+..+++|+.|+++++.....+| .+..+++|+.|++++|.....+|..+.++++|+.|++++|...+.+|..
T Consensus 626 L~----~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 626 LW----DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred cc----cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence 53 356789999999999987655555 4788999999999999877889999999999999999998766677776
Q ss_pred hhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHH-----H--------------------hhhc
Q 038320 286 FANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFV-----D--------------------RLSK 340 (467)
Q Consensus 286 l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-----~--------------------~~~~ 340 (467)
+ ++++|+.|++++|.. ...+|.. ..+|+.|++++|.+.. .|..+ . ....
T Consensus 701 i-~l~sL~~L~Lsgc~~-L~~~p~~---~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~ 774 (1153)
T PLN03210 701 I-NLKSLYRLNLSGCSR-LKSFPDI---STNISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMT 774 (1153)
T ss_pred C-CCCCCCEEeCCCCCC-ccccccc---cCCcCeeecCCCcccc-ccccccccccccccccccchhhccccccccchhhh
Confidence 5 789999999999976 4455542 4578999999988653 22211 0 0001
Q ss_pred ccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCE
Q 038320 341 CANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVV 420 (467)
Q Consensus 341 ~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 420 (467)
..+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|... ++++|+.|++++|.....+|.. .++|+.
T Consensus 775 ~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~ 850 (1153)
T PLN03210 775 MLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISD 850 (1153)
T ss_pred hccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCE
Confidence 123578999999998777889999999999999999987666788765 7899999999998765566643 468999
Q ss_pred EeCcCCCCcccCChhhhCCCCCCCEEeccCC-CCC
Q 038320 421 LDISGNPWIGLVTEVHFSKLKNLKELHIAKY-SLA 454 (467)
Q Consensus 421 L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n-~i~ 454 (467)
|++++|.+. .+|. .+..+++|+.|++++| ++.
T Consensus 851 L~Ls~n~i~-~iP~-si~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 851 LNLSRTGIE-EVPW-WIEKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred eECCCCCCc-cChH-HHhcCCCCCEEECCCCCCcC
Confidence 999999876 5777 6889999999999996 444
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=1.9e-24 Score=215.67 Aligned_cols=315 Identities=30% Similarity=0.350 Sum_probs=151.0
Q ss_pred CCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEE
Q 038320 117 LNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYL 196 (467)
Q Consensus 117 L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L 196 (467)
|+.|++++|.+. .+|..+..+.+|+.|+++.|.+. ..|....++.+|+++.|.+|....+|.. +..+++|+.|
T Consensus 47 L~~l~lsnn~~~--~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~~lP~~----~~~lknl~~L 119 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS--SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQSLPAS----ISELKNLQYL 119 (1081)
T ss_pred eEEeeccccccc--cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhhcCchh----HHhhhccccc
Confidence 555555555554 34555555555555555555554 4444455555555555555555544444 4555555555
Q ss_pred ECCCcCCCCCCCch--------hh--------hcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcc-
Q 038320 197 NLEGVDLSKAGSSW--------VQ--------ATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIP- 259 (467)
Q Consensus 197 ~L~~n~~~~~~~~~--------~~--------~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~- 259 (467)
++++|.+...+... .. .++.. .++.+++..|.+.+.++..+..+.. .|++++|.+.....
T Consensus 120 dlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls 196 (1081)
T KOG0618|consen 120 DLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQT-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLS 196 (1081)
T ss_pred ccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccc-cchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhh
Confidence 55555554432210 00 01111 1344444444444444433333333 35555554431000
Q ss_pred ----------------hhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecc
Q 038320 260 ----------------QWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLS 323 (467)
Q Consensus 260 ----------------~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~ 323 (467)
......++++.|+.+.|.++...+. .-..+|+++++++|++ ..+|++++.+.+|+.++..
T Consensus 197 ~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l--~~lp~wi~~~~nle~l~~n 272 (1081)
T KOG0618|consen 197 NLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNL--SNLPEWIGACANLEALNAN 272 (1081)
T ss_pred hccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhh--hcchHHHHhcccceEeccc
Confidence 0001123455555555554422111 1234677777777776 4566777777777777777
Q ss_pred CCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccc---------------
Q 038320 324 GNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESI--------------- 388 (467)
Q Consensus 324 ~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l--------------- 388 (467)
+|+++ ..|..+.... +|+.|....|+++ -+|......+.|++|++..|++. ..|+.+
T Consensus 273 ~N~l~-~lp~ri~~~~-----~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~ 344 (1081)
T KOG0618|consen 273 HNRLV-ALPLRISRIT-----SLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSS 344 (1081)
T ss_pred chhHH-hhHHHHhhhh-----hHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhh
Confidence 77774 4444444433 4444444444444 23334444455555555554443 222111
Q ss_pred -----------cCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCC
Q 038320 389 -----------GNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLA 454 (467)
Q Consensus 389 -----------~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~ 454 (467)
...+.|+.|.+.+|.+++..-..+.++++||.|+|++|++. ++|...+.+++.|+.|+|++|.++
T Consensus 345 n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~ 420 (1081)
T KOG0618|consen 345 NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT 420 (1081)
T ss_pred ccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh
Confidence 01223444555555555554445555555555555555533 333335555555555555555544
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=1.1e-21 Score=201.34 Aligned_cols=263 Identities=25% Similarity=0.312 Sum_probs=208.8
Q ss_pred CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCC
Q 038320 115 KHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQ 194 (467)
Q Consensus 115 ~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~ 194 (467)
..-..|+++.+.++ .+|..+. ++|+.|++.+|+++ .+|. ..++|++|++++|.++.+|.. .++|+
T Consensus 201 ~~~~~LdLs~~~Lt--sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~LtsLP~l-------p~sL~ 265 (788)
T PRK15387 201 NGNAVLNVGESGLT--TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPVL-------PPGLL 265 (788)
T ss_pred CCCcEEEcCCCCCC--cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCcccCc-------ccccc
Confidence 56778999999998 4788775 48999999999998 5665 358999999999999988742 36899
Q ss_pred EEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEecc
Q 038320 195 YLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLS 274 (467)
Q Consensus 195 ~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 274 (467)
.|++++|.+..... ..++|+.|++++|+++..+. ..++|+.|++++|.+++ +|.. ..+|+.|+++
T Consensus 266 ~L~Ls~N~L~~Lp~-------lp~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls 330 (788)
T PRK15387 266 ELSIFSNPLTHLPA-------LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAY 330 (788)
T ss_pred eeeccCCchhhhhh-------chhhcCEEECcCCccccccc----cccccceeECCCCcccc-CCCC---cccccccccc
Confidence 99999998876532 23678899999999987643 34789999999999985 4542 2468889999
Q ss_pred CCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCC
Q 038320 275 ANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQN 354 (467)
Q Consensus 275 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 354 (467)
+|.+++ +|.. ..+|+.|++++|++ . .+|.. .++|+.|++++|.+++ +|.. +.+|+.|++++|
T Consensus 331 ~N~L~~-LP~l---p~~Lq~LdLS~N~L-s-~LP~l---p~~L~~L~Ls~N~L~~-LP~l--------~~~L~~LdLs~N 392 (788)
T PRK15387 331 NNQLTS-LPTL---PSGLQELSVSDNQL-A-SLPTL---PSELYKLWAYNNRLTS-LPAL--------PSGLKELIVSGN 392 (788)
T ss_pred cCcccc-cccc---ccccceEecCCCcc-C-CCCCC---Ccccceehhhcccccc-Cccc--------ccccceEEecCC
Confidence 999874 5532 25799999999998 3 45543 3578889999999885 3432 137999999999
Q ss_pred CCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCCh
Q 038320 355 NLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTE 434 (467)
Q Consensus 355 ~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~ 434 (467)
++++ +|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|..+.++++|+.|++++|++++.++.
T Consensus 393 ~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 393 RLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred cccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 9985 4433 368999999999998 46753 357889999999998 7899999999999999999999988776
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=4.5e-21 Score=196.90 Aligned_cols=257 Identities=27% Similarity=0.312 Sum_probs=203.5
Q ss_pred cccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCC
Q 038320 101 YQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLE 180 (467)
Q Consensus 101 ~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~ 180 (467)
+.++ .+|+.+. ++|+.|++++|+++ .+|.. .++|++|++++|+++ .+|.. .++|+.|++++|.+..++
T Consensus 211 ~~Lt-sLP~~l~--~~L~~L~L~~N~Lt--~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~~Lp 278 (788)
T PRK15387 211 SGLT-TLPDCLP--AHITTLVIPDNNLT--SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLTHLP 278 (788)
T ss_pred CCCC-cCCcchh--cCCCEEEccCCcCC--CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeeccCCchhhhh
Confidence 6676 5777665 48999999999998 36653 589999999999998 56653 468999999999988766
Q ss_pred CCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcch
Q 038320 181 SDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQ 260 (467)
Q Consensus 181 ~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 260 (467)
.. ..+|+.|++++|.++.... ..++|+.|++++|.+.+.+. ...+|+.|++++|.+++ +|.
T Consensus 279 ~l-------p~~L~~L~Ls~N~Lt~LP~-------~p~~L~~LdLS~N~L~~Lp~----lp~~L~~L~Ls~N~L~~-LP~ 339 (788)
T PRK15387 279 AL-------PSGLCKLWIFGNQLTSLPV-------LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTS-LPT 339 (788)
T ss_pred hc-------hhhcCEEECcCCccccccc-------cccccceeECCCCccccCCC----CcccccccccccCcccc-ccc
Confidence 42 2578899999999986642 24789999999999987543 23468889999999974 564
Q ss_pred hccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhc
Q 038320 261 WLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSK 340 (467)
Q Consensus 261 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~ 340 (467)
. ..+|+.|++++|++++ +|.. .++|+.|++++|++ . .+|.. ..+|+.|++++|.+++ +|..
T Consensus 340 l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L-~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l------ 400 (788)
T PRK15387 340 L---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRL-T-SLPAL---PSGLKELIVSGNRLTS-LPVL------ 400 (788)
T ss_pred c---ccccceEecCCCccCC-CCCC---Ccccceehhhcccc-c-cCccc---ccccceEEecCCcccC-CCCc------
Confidence 2 2589999999999984 5542 45788999999998 3 46643 3579999999999985 3321
Q ss_pred ccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcC
Q 038320 341 CANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGK 414 (467)
Q Consensus 341 ~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~ 414 (467)
+.+|+.|++++|+++. +|.. ..+|+.|++++|+++ .+|..+..+++|+.|+|++|++++..+..+..
T Consensus 401 --~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 401 --PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred --ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 1379999999999985 5543 357889999999998 78999999999999999999999988887743
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.84 E-value=3.7e-20 Score=191.35 Aligned_cols=328 Identities=21% Similarity=0.302 Sum_probs=163.5
Q ss_pred cccccHhhHHHHHHhHhcCCCCCCC---CCCCC-CCCCCCccc----------------EEecCCCCCEEEEEcCCCCCC
Q 038320 32 IARCVQNEKEALLKIKASVTDPSGR---LSSWT-GEDCCKWEG----------------VICDNSTGKVVQLKLRSPEIP 91 (467)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~~~~~~~~---~~~w~-~~~~c~w~g----------------v~c~~~~~~v~~l~l~~~~~~ 91 (467)
+....+++.+.++++...+..|... -+.|. +.+.|.-.. |.|. ++.|+.+..-+....
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~--~~~vt~l~~~g~~~~ 134 (754)
T PRK15370 57 PETASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGG--GKSVTYTRVTESEQA 134 (754)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecC--CCccccccccccccc
Confidence 5566678888999988888777531 24584 566785443 4553 355666665542211
Q ss_pred CC--cCCCCccccc-----ccccC--------cc-----ccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCc
Q 038320 92 DS--FTDNGTTYQL-----EGEIS--------PS-----VLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGAS 151 (467)
Q Consensus 92 ~~--~~~~~~~~~l-----~~~~~--------~~-----l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~ 151 (467)
+. ..-+..+... ....+ .. -+-..+...|++++++++ .+|..+. ++|+.|++++|+
T Consensus 135 ~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt--sLP~~Ip--~~L~~L~Ls~N~ 210 (754)
T PRK15370 135 SSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT--TIPACIP--EQITTLILDNNE 210 (754)
T ss_pred ccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC--cCCcccc--cCCcEEEecCCC
Confidence 10 0000000000 00000 00 122245677777777776 3565443 467778888777
Q ss_pred CCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCc
Q 038320 152 FAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLF 231 (467)
Q Consensus 152 l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 231 (467)
++ .+|..+. .+|++|++++|.++.+|.. + .++|+.|++++|.+...... + .++|+.|++++|++.
T Consensus 211 Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~~----l--~~~L~~L~Ls~N~L~~LP~~----l--~s~L~~L~Ls~N~L~ 275 (754)
T PRK15370 211 LK-SLPENLQ--GNIKTLYANSNQLTSIPAT----L--PDTIQEMELSINRITELPER----L--PSALQSLDLFHNKIS 275 (754)
T ss_pred CC-cCChhhc--cCCCEEECCCCccccCChh----h--hccccEEECcCCccCcCChh----H--hCCCCEEECcCCccC
Confidence 77 4555443 4777777777777766543 2 13567777777766643221 1 135666666666665
Q ss_pred ccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccc
Q 038320 232 EFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDL 311 (467)
Q Consensus 232 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l 311 (467)
.. |..+. ++|+.|++++|.+++ +|..+. ++|+.|++++|.++. +|..+ .++|+.|++++|.+ + .+|..+
T Consensus 276 ~L-P~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L-t-~LP~~l 344 (754)
T PRK15370 276 CL-PENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENAL-T-SLPASL 344 (754)
T ss_pred cc-ccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcc-c-cCChhh
Confidence 43 32221 356666666665552 333221 345555555555552 33222 23555555555555 2 233332
Q ss_pred cCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccc---
Q 038320 312 GSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESI--- 388 (467)
Q Consensus 312 ~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l--- 388 (467)
. ++|+.|++++|.++. +|..+. ++|+.|++++|+++. +|..+. ..|+.|++++|++. .+|..+
T Consensus 345 ~--~sL~~L~Ls~N~L~~-LP~~lp-------~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~ 410 (754)
T PRK15370 345 P--PELQVLDVSKNQITV-LPETLP-------PTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHF 410 (754)
T ss_pred c--CcccEEECCCCCCCc-CChhhc-------CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHH
Confidence 1 355555555555442 222211 145555555555542 233222 23455555555544 333222
Q ss_pred -cCCCCCCEEECcCCcCc
Q 038320 389 -GNLSSLRELYLHNNLMD 405 (467)
Q Consensus 389 -~~~~~L~~L~Ls~n~l~ 405 (467)
..++.+..|++.+|.++
T Consensus 411 ~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 411 RGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hhcCCCccEEEeeCCCcc
Confidence 22344455555555444
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.82 E-value=4.8e-21 Score=183.47 Aligned_cols=288 Identities=26% Similarity=0.288 Sum_probs=139.6
Q ss_pred EeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCC----CCccCCCCCcCCeeeccCccCCCCCCC---ChhhcCCCCC
Q 038320 120 LDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGN----IPPSFGNLSSLQILDLNTFYYSSLESD---DVEWLSRLSS 192 (467)
Q Consensus 120 L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~~~~l~~~---~~~~l~~l~~ 192 (467)
|+|..+.+++......+..+.+|++|+++++.+++. ++..+...++|++++++++.+...+.. ....+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 455555555443444455555566666666655321 333344555555555555444321110 0112334455
Q ss_pred CCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCC-CCCCEE
Q 038320 193 LQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNI-SKLAHL 271 (467)
Q Consensus 193 L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L 271 (467)
|+.|++++|.+..........+...++|++|++++|++.+... ..+...+..+ ++|+.|
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~--------------------~~l~~~l~~~~~~L~~L 142 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL--------------------RLLAKGLKDLPPALEKL 142 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH--------------------HHHHHHHHhCCCCceEE
Confidence 5555555554443221111111111234444444444432100 0111222333 455555
Q ss_pred eccCCccccc----cchhhhCCCCCCEEeCCCCCCCCCC---CcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCC
Q 038320 272 DLSANNLQGN----IPDAFANMTSLRELDLSENSLIGGQ---IPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANS 344 (467)
Q Consensus 272 ~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~ 344 (467)
++++|.+++. ++..+..+++|++|++++|.+.... ++..+..+++|+.|++++|.+++.....+.... ...+
T Consensus 143 ~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~-~~~~ 221 (319)
T cd00116 143 VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL-ASLK 221 (319)
T ss_pred EcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh-cccC
Confidence 5555555421 2223444555666666666551111 122333445666666666666554443333221 1123
Q ss_pred CccEEECcCCCCCcCCCcccc-----CCCCCCEEEccCCcCcc----cccccccCCCCCCEEECcCCcCccc----Chhh
Q 038320 345 SLESLDLGQNNLGGFLPNSLG-----QLENLKILQLWGNLFRG----SIPESIGNLSSLRELYLHNNLMDGT----IPKS 411 (467)
Q Consensus 345 ~L~~L~L~~n~i~~~~~~~l~-----~l~~L~~L~l~~n~l~~----~~~~~l~~~~~L~~L~Ls~n~l~~~----~p~~ 411 (467)
+|++|++++|.+++.....+. ..+.|++|++++|.+++ .+...+..+++|+++++++|.++.. +...
T Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~ 301 (319)
T cd00116 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES 301 (319)
T ss_pred CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence 566666666666542111111 23677777777777752 2334455667888888888888754 4444
Q ss_pred hcCC-CCCCEEeCcCCCC
Q 038320 412 LGKL-SHLVVLDISGNPW 428 (467)
Q Consensus 412 l~~l-~~L~~L~l~~n~~ 428 (467)
+... +.|+++++.+|++
T Consensus 302 ~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 302 LLEPGNELESLWVKDDSF 319 (319)
T ss_pred HhhcCCchhhcccCCCCC
Confidence 4445 6888888888764
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.80 E-value=8.6e-21 Score=181.75 Aligned_cols=236 Identities=26% Similarity=0.292 Sum_probs=165.0
Q ss_pred CCCCCCCEEECCCCcCcc------cCCccccCCCCCcEEEccCCcCCCCcchhccCCCC---CCEEeccCCcccc----c
Q 038320 215 NMLPSLSELHLPACGLFE------FPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISK---LAHLDLSANNLQG----N 281 (467)
Q Consensus 215 ~~l~~L~~L~l~~n~~~~------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~---L~~L~l~~n~l~~----~ 281 (467)
...+.+++++++++.+.+ ..+..+..+++|++|++++|.+.+..+..+..+.+ |+.|++++|.+.+ .
T Consensus 48 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~ 127 (319)
T cd00116 48 RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRL 127 (319)
T ss_pred hhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHH
Confidence 334445555555444431 12234555777888888887776555555544444 9999999988873 2
Q ss_pred cchhhhCC-CCCCEEeCCCCCCCCC----CCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCC
Q 038320 282 IPDAFANM-TSLRELDLSENSLIGG----QIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNL 356 (467)
Q Consensus 282 ~~~~l~~l-~~L~~L~L~~n~l~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i 356 (467)
+...+..+ ++|+.|++++|.+ ++ .+...+..+++|++|++++|.+++.....+.... ...++|+.|++++|.+
T Consensus 128 l~~~l~~~~~~L~~L~L~~n~l-~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~i 205 (319)
T cd00116 128 LAKGLKDLPPALEKLVLGRNRL-EGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL-KANCNLEVLDLNNNGL 205 (319)
T ss_pred HHHHHHhCCCCceEEEcCCCcC-CchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH-HhCCCCCEEeccCCcc
Confidence 33455667 8999999999998 42 2344567778999999999999875443332211 1124899999999998
Q ss_pred CcC----CCccccCCCCCCEEEccCCcCccccccccc-----CCCCCCEEECcCCcCcc----cChhhhcCCCCCCEEeC
Q 038320 357 GGF----LPNSLGQLENLKILQLWGNLFRGSIPESIG-----NLSSLRELYLHNNLMDG----TIPKSLGKLSHLVVLDI 423 (467)
Q Consensus 357 ~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~~~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~l 423 (467)
++. +...+..+++|++|++++|.+++.....+. ..+.|++|++++|.+++ .+.+.+..+++|+++++
T Consensus 206 ~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l 285 (319)
T cd00116 206 TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDL 285 (319)
T ss_pred ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEEC
Confidence 754 344567789999999999999863333332 24799999999999973 35566777899999999
Q ss_pred cCCCCccc----CChhhhCCC-CCCCEEeccCCCC
Q 038320 424 SGNPWIGL----VTEVHFSKL-KNLKELHIAKYSL 453 (467)
Q Consensus 424 ~~n~~~~~----~~~~~~~~l-~~L~~l~l~~n~i 453 (467)
++|.++.. +.. .+... +.|+++++.+|++
T Consensus 286 ~~N~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 286 RGNKFGEEGAQLLAE-SLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCCCcHHHHHHHHH-HHhhcCCchhhcccCCCCC
Confidence 99999855 333 34444 7899999999853
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=1.1e-18 Score=180.55 Aligned_cols=248 Identities=22% Similarity=0.336 Sum_probs=180.1
Q ss_pred CCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCC
Q 038320 140 EKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPS 219 (467)
Q Consensus 140 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~ 219 (467)
.+...|+++++.++ .+|..+. ++|+.|++++|.++.+|.. +. .+|+.|++++|.++..... + .++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~LtsLP~~----l~--~nL~~L~Ls~N~LtsLP~~----l--~~~ 242 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELKSLPEN----LQ--GNIKTLYANSNQLTSIPAT----L--PDT 242 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCcCChh----hc--cCCCEEECCCCccccCChh----h--hcc
Confidence 45788999999888 5776553 5799999999999988765 22 4899999999988865322 1 247
Q ss_pred CCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCC
Q 038320 220 LSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSE 299 (467)
Q Consensus 220 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 299 (467)
|+.|++++|.+... |..+. .+|+.|++++|.++ .+|..+. ++|+.|++++|.+++ +|..+. ++|+.|++++
T Consensus 243 L~~L~Ls~N~L~~L-P~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~ 313 (754)
T PRK15370 243 IQEMELSINRITEL-PERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQS 313 (754)
T ss_pred ccEEECcCCccCcC-ChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcC
Confidence 89999999988754 33332 57899999999887 5666553 578999999998874 454332 4688888998
Q ss_pred CCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCc
Q 038320 300 NSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNL 379 (467)
Q Consensus 300 n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 379 (467)
|.+ . .+|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+ .++|++|++++|.
T Consensus 314 N~L-t-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~-------~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~ 378 (754)
T PRK15370 314 NSL-T-ALPETL--PPGLKTLEAGENALTS-LPASLP-------PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNA 378 (754)
T ss_pred Ccc-c-cCCccc--cccceeccccCCcccc-CChhhc-------CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCc
Confidence 888 3 355433 3678888999888875 343331 37889999998887 355544 3688899999998
Q ss_pred CcccccccccCCCCCCEEECcCCcCcccChh----hhcCCCCCCEEeCcCCCCcc
Q 038320 380 FRGSIPESIGNLSSLRELYLHNNLMDGTIPK----SLGKLSHLVVLDISGNPWIG 430 (467)
Q Consensus 380 l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~l~~n~~~~ 430 (467)
++ .+|..+. ..|+.|++++|++. .+|. ....++.+..|++.+|+++.
T Consensus 379 Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 379 LT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred CC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 88 5666553 36888888888887 4444 34445788889999988763
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.78 E-value=4.9e-21 Score=174.58 Aligned_cols=274 Identities=26% Similarity=0.232 Sum_probs=170.8
Q ss_pred CCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccC-ccCCCCCCCChhhcCCCCCCC
Q 038320 116 HLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNT-FYYSSLESDDVEWLSRLSSLQ 194 (467)
Q Consensus 116 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~-n~~~~l~~~~~~~l~~l~~L~ 194 (467)
.-..++|..|+|+.. .+..|+.+++|+.|||++|.|+..-|..|.+++.|..|.+.+ |+++.++... |.++..|+
T Consensus 68 ~tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~---F~gL~slq 143 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA---FGGLSSLQ 143 (498)
T ss_pred cceEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH---hhhHHHHH
Confidence 446678888888854 556788888888888888888877788888888887776666 8888888775 66677777
Q ss_pred EEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCC------------Ccchhc
Q 038320 195 YLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNS------------SIPQWL 262 (467)
Q Consensus 195 ~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~------------~~~~~l 262 (467)
.|.+.-|++.-.. ...+..++++..|.+.+|.+......++..+..++.+.+..|.+.. ..|..+
T Consensus 144 rLllNan~i~Cir---~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet 220 (498)
T KOG4237|consen 144 RLLLNANHINCIR---QDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET 220 (498)
T ss_pred HHhcChhhhcchh---HHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence 7777777776554 3366677888888888887777666677777888888777776321 112222
Q ss_pred cCCCCCCEEeccCCccccccchhhhCCCCCCEE--eC-CCCCCCCCCCcc-cccCCCCCCEEeccCCcCCCchhhHHHhh
Q 038320 263 LNISKLAHLDLSANNLQGNIPDAFANMTSLREL--DL-SENSLIGGQIPK-DLGSLCNLWDLDLSGNDLDGEIIEFVDRL 338 (467)
Q Consensus 263 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L--~L-~~n~l~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~~ 338 (467)
+..+-.....+.+.++...-+..+... ++.+ .+ +.+.. ....|. .|+.+++|+.|++++|.+++.-+.++...
T Consensus 221 sgarc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~-d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~ 297 (498)
T KOG4237|consen 221 SGARCVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFP-DSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA 297 (498)
T ss_pred ccceecchHHHHHHHhcccchhhhhhh--HHhHHHhhccccCc-CCcChHHHHhhcccceEeccCCCccchhhhhhhcch
Confidence 222222223333333322222222111 1111 11 11111 233332 35666677777777777666655665555
Q ss_pred hcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcC
Q 038320 339 SKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLM 404 (467)
Q Consensus 339 ~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l 404 (467)
. .+++|.|..|++...-...|.++..|++|+|++|+++..-|..|..+.+|.+|+|-.|.+
T Consensus 298 a-----~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 298 A-----ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred h-----hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 5 666677777666644445566666667777777776666666666666666666666654
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.76 E-value=9.2e-21 Score=172.79 Aligned_cols=278 Identities=22% Similarity=0.218 Sum_probs=172.6
Q ss_pred CCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCC
Q 038320 142 LRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLS 221 (467)
Q Consensus 142 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~ 221 (467)
-..++|..|+|+...|..|+.+++|+.||+++|.++.+.+++ |.. ++.|.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~A---F~G---------------------------L~~l~ 118 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDA---FKG---------------------------LASLL 118 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHh---hhh---------------------------hHhhh
Confidence 457888889888666667888888888888888888777664 233 33333
Q ss_pred EEECCC-CcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCC
Q 038320 222 ELHLPA-CGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSEN 300 (467)
Q Consensus 222 ~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 300 (467)
.|-+.+ |+|++.+...|.++..|+.|.+.-|++.....+.+..++++..|.+.+|.+...-...+..+..++++.+..|
T Consensus 119 ~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 119 SLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred HHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcC
Confidence 332222 5555555556666666666666666666556666666666666666666665333335666666666666666
Q ss_pred CCCCCC-----------CcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCC-CccccCCC
Q 038320 301 SLIGGQ-----------IPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFL-PNSLGQLE 368 (467)
Q Consensus 301 ~l~~~~-----------~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~-~~~l~~l~ 368 (467)
.+.... .+..++.........+.+.++.......+.... ..+..=..+.+...+.. ...|..++
T Consensus 199 p~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~----esl~s~~~~~d~~d~~cP~~cf~~L~ 274 (498)
T KOG4237|consen 199 PFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSL----ESLPSRLSSEDFPDSICPAKCFKKLP 274 (498)
T ss_pred ccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhH----HhHHHhhccccCcCCcChHHHHhhcc
Confidence 532211 112222222233333333333332222222110 01111111223233332 34678888
Q ss_pred CCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEec
Q 038320 369 NLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448 (467)
Q Consensus 369 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l 448 (467)
+|+.|++++|++++.-+.+|.....+++|.|..|++...-...|.++..|+.|+|.+|+++...|. .|..+.+|.+|+|
T Consensus 275 ~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~-aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 275 NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG-AFQTLFSLSTLNL 353 (498)
T ss_pred cceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc-cccccceeeeeeh
Confidence 888888888888887788888888888888888888766667778888888888888888877777 7888888888888
Q ss_pred cCCCCC
Q 038320 449 AKYSLA 454 (467)
Q Consensus 449 ~~n~i~ 454 (467)
-.|++.
T Consensus 354 ~~Np~~ 359 (498)
T KOG4237|consen 354 LSNPFN 359 (498)
T ss_pred ccCccc
Confidence 887543
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=1.9e-18 Score=140.45 Aligned_cols=166 Identities=25% Similarity=0.401 Sum_probs=113.7
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCC
Q 038320 111 VLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRL 190 (467)
Q Consensus 111 l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l 190 (467)
+.++.++..|.|++|+++ .+|..+..+.+|+.|++++|++. .+|..+..+++|++|++.-|.+..+|.. |+.+
T Consensus 29 Lf~~s~ITrLtLSHNKl~--~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprg----fgs~ 101 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT--VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRG----FGSF 101 (264)
T ss_pred ccchhhhhhhhcccCcee--ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccc----cCCC
Confidence 456667777778888777 46777777888888888888776 6777778888888888877777766665 6777
Q ss_pred CCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCE
Q 038320 191 SSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAH 270 (467)
Q Consensus 191 ~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 270 (467)
+.|+.||+.+|++.... .+..+..+..|+.|+++.|.+.-. |..++++++|+.|.+.+|.+. .+|..++.++.|++
T Consensus 102 p~levldltynnl~e~~--lpgnff~m~tlralyl~dndfe~l-p~dvg~lt~lqil~lrdndll-~lpkeig~lt~lre 177 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENS--LPGNFFYMTTLRALYLGDNDFEIL-PPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRE 177 (264)
T ss_pred chhhhhhcccccccccc--CCcchhHHHHHHHHHhcCCCcccC-ChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHH
Confidence 77777777777665432 133455566666667766666544 335667777777777777665 56677777777777
Q ss_pred EeccCCccccccchhhhC
Q 038320 271 LDLSANNLQGNIPDAFAN 288 (467)
Q Consensus 271 L~l~~n~l~~~~~~~l~~ 288 (467)
|++.+|+++ .+|..+++
T Consensus 178 lhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 178 LHIQGNRLT-VLPPELAN 194 (264)
T ss_pred Hhcccceee-ecChhhhh
Confidence 777777766 44544443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=4.4e-18 Score=138.28 Aligned_cols=184 Identities=33% Similarity=0.577 Sum_probs=136.4
Q ss_pred cCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCC
Q 038320 239 VNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLW 318 (467)
Q Consensus 239 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~ 318 (467)
..+.+.+.|.++.|.++ .+|..+..+.+|+.|++.+|+++ .+|..++.+++|+.|+++-|++ ...|..|+.+|.|+
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl--~~lprgfgs~p~le 105 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL--NILPRGFGSFPALE 105 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh--hcCccccCCCchhh
Confidence 34555666667777766 45556677777777777777776 5677777777777777777776 56777788888888
Q ss_pred EEeccCCcCCC-chhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEE
Q 038320 319 DLDLSGNDLDG-EIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLREL 397 (467)
Q Consensus 319 ~L~l~~n~l~~-~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L 397 (467)
.||+.+|.+.. ..|..+..+. .|+.|+++.|.+. .+|..++++++|+.|.+..|.+. .+|..++.++.|++|
T Consensus 106 vldltynnl~e~~lpgnff~m~-----tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMT-----TLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLREL 178 (264)
T ss_pred hhhccccccccccCCcchhHHH-----HHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHH
Confidence 88888777664 3454444444 6888888888887 67888899999999999999888 788888899999999
Q ss_pred ECcCCcCcccChhhhcCC---CCCCEEeCcCCCCcccCCh
Q 038320 398 YLHNNLMDGTIPKSLGKL---SHLVVLDISGNPWIGLVTE 434 (467)
Q Consensus 398 ~Ls~n~l~~~~p~~l~~l---~~L~~L~l~~n~~~~~~~~ 434 (467)
++.+|+++ .+|..++++ .+=+.+.+..|++...|.+
T Consensus 179 hiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 179 HIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE 217 (264)
T ss_pred hcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence 99999987 666666654 3345667777888776655
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.55 E-value=2.9e-14 Score=147.10 Aligned_cols=150 Identities=35% Similarity=0.534 Sum_probs=119.7
Q ss_pred ccccHhhHHHHHHhHhcCCCCCCCCCCCCCCCCC----CcccEEecCC--C--CCEEEEEcCCCCCCCCcCCCCcccccc
Q 038320 33 ARCVQNEKEALLKIKASVTDPSGRLSSWTGEDCC----KWEGVICDNS--T--GKVVQLKLRSPEIPDSFTDNGTTYQLE 104 (467)
Q Consensus 33 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~c----~w~gv~c~~~--~--~~v~~l~l~~~~~~~~~~~~~~~~~l~ 104 (467)
..+.+.|.++|..+|.++.+|.. .+|.+..|| .|.||.|... . .+|+.|+|++ +.+.
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~-------------n~L~ 431 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR--FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN-------------QGLR 431 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc--CCCCCCCCCCcccccccceeeccCCCCceEEEEEECCC-------------CCcc
Confidence 45667899999999999876542 479775553 7999999532 2 2588999988 8899
Q ss_pred cccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCC-CCCCC
Q 038320 105 GEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSS-LESDD 183 (467)
Q Consensus 105 ~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~-l~~~~ 183 (467)
|.+|..+..+++|++|+|++|.+.+. +|..++.+++|++|++++|.+++.+|..++++++|++|++++|.++. +|..
T Consensus 432 g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~- 509 (623)
T PLN03150 432 GFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA- 509 (623)
T ss_pred ccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChH-
Confidence 99999999999999999999999987 99999999999999999999999999999999999999999988763 3332
Q ss_pred hhhcCC-CCCCCEEECCCcC
Q 038320 184 VEWLSR-LSSLQYLNLEGVD 202 (467)
Q Consensus 184 ~~~l~~-l~~L~~L~L~~n~ 202 (467)
+.. ..++..+++.+|.
T Consensus 510 ---l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 510 ---LGGRLLHRASFNFTDNA 526 (623)
T ss_pred ---HhhccccCceEEecCCc
Confidence 222 2344555555553
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.35 E-value=3e-13 Score=122.49 Aligned_cols=189 Identities=24% Similarity=0.302 Sum_probs=119.7
Q ss_pred cCCCCCCEEeccCCccccccch----hhhCCCCCCEEeCCCCCCCCCC-------------CcccccCCCCCCEEeccCC
Q 038320 263 LNISKLAHLDLSANNLQGNIPD----AFANMTSLRELDLSENSLIGGQ-------------IPKDLGSLCNLWDLDLSGN 325 (467)
Q Consensus 263 ~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~-------------~~~~l~~l~~L~~L~l~~n 325 (467)
..+++|+.|+|++|.+....+. .+..+..|++|.|.+|.+ +.. .....+.-+.|+.+...+|
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL-GPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC-ChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 3455666666666666433222 234566677777776665 211 1112334567888888888
Q ss_pred cCCCchhhHHHhhhcccCCCccEEECcCCCCCcC----CCccccCCCCCCEEEccCCcCccc----ccccccCCCCCCEE
Q 038320 326 DLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGF----LPNSLGQLENLKILQLWGNLFRGS----IPESIGNLSSLREL 397 (467)
Q Consensus 326 ~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L 397 (467)
++.+.....+..... ..+.|+.+.+..|.|... +...+..+++|+.|||.+|.++.. +...+..+++|+.|
T Consensus 168 rlen~ga~~~A~~~~-~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 168 RLENGGATALAEAFQ-SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred ccccccHHHHHHHHH-hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence 877665555544332 224788888888877532 234566788888888888887742 33445677888888
Q ss_pred ECcCCcCcccChhhh-----cCCCCCCEEeCcCCCCccc---CChhhhCCCCCCCEEeccCCCC
Q 038320 398 YLHNNLMDGTIPKSL-----GKLSHLVVLDISGNPWIGL---VTEVHFSKLKNLKELHIAKYSL 453 (467)
Q Consensus 398 ~Ls~n~l~~~~p~~l-----~~l~~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~l~l~~n~i 453 (467)
++++|.+.......+ ...|+|++|.+.+|.++.. +........|.|+.|+|++|++
T Consensus 247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 888888865433222 2468888888888887632 2222455678888888888876
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.33 E-value=2e-13 Score=123.66 Aligned_cols=252 Identities=26% Similarity=0.315 Sum_probs=128.4
Q ss_pred cCccccCCCCCCEEeCCCCCCCCC---CCCcccCCCCCCCEEEcCCCcCCC----CCCccCCCCCcCCeeeccCccCCCC
Q 038320 107 ISPSVLDLKHLNYLDLSLNNFRGS---RIPNFLGSLEKLRYLNLSGASFAG----NIPPSFGNLSSLQILDLNTFYYSSL 179 (467)
Q Consensus 107 ~~~~l~~l~~L~~L~L~~n~i~~~---~~~~~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~l~~n~~~~l 179 (467)
+-+.+..+..++.++|++|.+... .+...+.+.++|+..++++- ++| .+|+.+..+
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l---------------- 84 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKML---------------- 84 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHH----------------
Confidence 334456677777888888776532 12234455666777666653 222 222221100
Q ss_pred CCCChhhcCCCCCCCEEECCCcCCCCCCCc-hhhhcCCCCCCCEEECCCCcCcccCC-------------ccccCCCCCc
Q 038320 180 ESDDVEWLSRLSSLQYLNLEGVDLSKAGSS-WVQATNMLPSLSELHLPACGLFEFPP-------------LSVVNFSSLL 245 (467)
Q Consensus 180 ~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~-------------~~l~~l~~L~ 245 (467)
...+..+++|+.|+||.|-+...++. +...+.++..|++|++.+|.+.-..- .....-+.|+
T Consensus 85 ----~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lr 160 (382)
T KOG1909|consen 85 ----SKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLR 160 (382)
T ss_pred ----HHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceE
Confidence 01133344555555555544433221 22233445555555555555432111 1122345666
Q ss_pred EEEccCCcCCCC----cchhccCCCCCCEEeccCCccccc----cchhhhCCCCCCEEeCCCCCCCCCC----CcccccC
Q 038320 246 FLDLSSNDFNSS----IPQWLLNISKLAHLDLSANNLQGN----IPDAFANMTSLRELDLSENSLIGGQ----IPKDLGS 313 (467)
Q Consensus 246 ~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~----~~~~l~~ 313 (467)
++..+.|++... +...+...+.|+.+.++.|.+... +...+..+++|+.|||.+|.+ +.. +...++.
T Consensus 161 v~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf-t~egs~~LakaL~s 239 (382)
T KOG1909|consen 161 VFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF-TLEGSVALAKALSS 239 (382)
T ss_pred EEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchh-hhHHHHHHHHHhcc
Confidence 666666665432 223344556666666666655321 223455667777777777666 221 2234556
Q ss_pred CCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcC----CCccccCCCCCCEEEccCCcC
Q 038320 314 LCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGF----LPNSLGQLENLKILQLWGNLF 380 (467)
Q Consensus 314 l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n~l 380 (467)
+++|+.+++++|.+.......+........|+|++|.+.+|.|+.. +...+...+.|+.|+|++|.+
T Consensus 240 ~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 240 WPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 6667777777777666665555554444455666666666666522 222333455555566655555
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=4.2e-12 Score=118.28 Aligned_cols=215 Identities=23% Similarity=0.171 Sum_probs=136.7
Q ss_pred hcCCCCCCCEEECCCCcCcccCC-ccccCCCCCcEEEccCCcCCC--CcchhccCCCCCCEEeccCCccccccchh-hhC
Q 038320 213 ATNMLPSLSELHLPACGLFEFPP-LSVVNFSSLLFLDLSSNDFNS--SIPQWLLNISKLAHLDLSANNLQGNIPDA-FAN 288 (467)
Q Consensus 213 ~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~ 288 (467)
.-.++.+|+++.+.++.+..... .....+++++.|+++.|-+.. .+......+++|+.|+++.|.+....... -..
T Consensus 116 kQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 116 KQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred HhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 34567788888888887765433 345567888888888886653 22233456788888888888776332222 134
Q ss_pred CCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcC-CCccccCC
Q 038320 289 MTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGF-LPNSLGQL 367 (467)
Q Consensus 289 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~-~~~~l~~l 367 (467)
+++|+.|.++.|.+...++...+..+|+|+.|++.+|..-...... ...+..|++|+|++|++-.. .-...+.+
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-----~~i~~~L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-----TKILQTLQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-----hhhhhHHhhccccCCcccccccccccccc
Confidence 6778888888888854455555667788888888887521111111 11122688888888876533 12355677
Q ss_pred CCCCEEEccCCcCccc-cccc-----ccCCCCCCEEECcCCcCccc-ChhhhcCCCCCCEEeCcCCCCcccC
Q 038320 368 ENLKILQLWGNLFRGS-IPES-----IGNLSSLRELYLHNNLMDGT-IPKSLGKLSHLVVLDISGNPWIGLV 432 (467)
Q Consensus 368 ~~L~~L~l~~n~l~~~-~~~~-----l~~~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~l~~n~~~~~~ 432 (467)
+.|+.|+++.+.+... +|+. ...+++|+.|++..|++.+. .-..+..+++|+.|.+..|.++.+-
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~ 342 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKET 342 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccc
Confidence 8888888888877642 2222 23567888888888877532 2244556777788887777776543
No 27
>PLN03150 hypothetical protein; Provisional
Probab=99.20 E-value=4.6e-11 Score=123.53 Aligned_cols=107 Identities=35% Similarity=0.635 Sum_probs=96.9
Q ss_pred CccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCc
Q 038320 345 SLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDIS 424 (467)
Q Consensus 345 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~ 424 (467)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.|.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCChhhhCC-CCCCCEEeccCCC
Q 038320 425 GNPWIGLVTEVHFSK-LKNLKELHIAKYS 452 (467)
Q Consensus 425 ~n~~~~~~~~~~~~~-l~~L~~l~l~~n~ 452 (467)
+|+++|.+|. .+.. ...+..+++.+|.
T Consensus 499 ~N~l~g~iP~-~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPA-ALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCCh-HHhhccccCceEEecCCc
Confidence 9999999998 5554 3467788999884
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2.4e-12 Score=119.87 Aligned_cols=188 Identities=27% Similarity=0.260 Sum_probs=95.6
Q ss_pred cCCCCCCCEEEcCCCcCCCCCC--ccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhh
Q 038320 136 LGSLEKLRYLNLSGASFAGNIP--PSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQA 213 (467)
Q Consensus 136 ~~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~ 213 (467)
-.++.+|+.+.|+++... ..+ .....|++++.||+++|-+...... ......+|+|+.|+++.|.+....... .
T Consensus 117 Qsn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v-~~i~eqLp~Le~LNls~Nrl~~~~~s~--~ 192 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPV-LKIAEQLPSLENLNLSSNRLSNFISSN--T 192 (505)
T ss_pred hhhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHH-HHHHHhcccchhcccccccccCCcccc--c
Confidence 345778888888887765 233 2456778888888887766543221 122456777777777777665443221 1
Q ss_pred cCCCCCCCEEECCCCcCcccC-CccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCcccccc-chhhhCCCC
Q 038320 214 TNMLPSLSELHLPACGLFEFP-PLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNI-PDAFANMTS 291 (467)
Q Consensus 214 ~~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~ 291 (467)
-..++.|+.|.++.|.++... -..+..+|+|+.|++..|...........-+..|+.|+|++|++...- -...+.++.
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccc
Confidence 124556666666666655321 122334556666666555322111112223345555555555554211 122345555
Q ss_pred CCEEeCCCCCCCCCCCccc-----ccCCCCCCEEeccCCcC
Q 038320 292 LRELDLSENSLIGGQIPKD-----LGSLCNLWDLDLSGNDL 327 (467)
Q Consensus 292 L~~L~L~~n~l~~~~~~~~-----l~~l~~L~~L~l~~n~l 327 (467)
|+.|+++.+.+.+-..|+. ...+++|++|++..|.+
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 5555555555422222222 23344455555554444
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.19 E-value=4.6e-11 Score=117.85 Aligned_cols=197 Identities=38% Similarity=0.528 Sum_probs=112.4
Q ss_pred EEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCC-cCCeeeccCccCCCCCCCChhhcCCCCCCCEEE
Q 038320 119 YLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLS-SLQILDLNTFYYSSLESDDVEWLSRLSSLQYLN 197 (467)
Q Consensus 119 ~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~ 197 (467)
.++++.+.+.. ....+..++.++.|++.+|.++ .+|....... +|+.|++++|.+..++.. +..+++|+.|+
T Consensus 97 ~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~~~----~~~l~~L~~L~ 169 (394)
T COG4886 97 SLDLNLNRLRS--NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSP----LRNLPNLKNLD 169 (394)
T ss_pred eeecccccccc--CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhhhhh----hhccccccccc
Confidence 46666665532 2333444567777777777776 5665565663 777777777777766533 66677777777
Q ss_pred CCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCc
Q 038320 198 LEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANN 277 (467)
Q Consensus 198 L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 277 (467)
+++|+++.... .....+.|+.|++++|++...++ .......|+++.+++|.+. ..+..+.++.++..+.+.+|+
T Consensus 170 l~~N~l~~l~~----~~~~~~~L~~L~ls~N~i~~l~~-~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 170 LSFNDLSDLPK----LLSNLSNLNNLDLSGNKISDLPP-EIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNK 243 (394)
T ss_pred cCCchhhhhhh----hhhhhhhhhheeccCCccccCch-hhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCce
Confidence 77777666532 22256666666666666665543 2233344666666666432 333445555555555555555
Q ss_pred cccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchh
Q 038320 278 LQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEII 332 (467)
Q Consensus 278 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 332 (467)
+. ..+..++.++.++.|++++|.+ ..++. ++.+.+++.|+++++.+....+
T Consensus 244 ~~-~~~~~~~~l~~l~~L~~s~n~i--~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 244 LE-DLPESIGNLSNLETLDLSNNQI--SSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ee-eccchhccccccceeccccccc--ccccc-ccccCccCEEeccCccccccch
Confidence 54 2244455555566666666655 22222 5555566666666655554443
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.18 E-value=5.7e-12 Score=111.91 Aligned_cols=209 Identities=28% Similarity=0.290 Sum_probs=128.2
Q ss_pred CCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccC
Q 038320 234 PPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGS 313 (467)
Q Consensus 234 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~ 313 (467)
.|..+.-+.+|..+.++.+.-.. +......-+.|+++.+.+..+.. .|. +.....+....-..-....|........
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~~-~~~-l~pe~~~~D~~~~E~~t~~G~~~~~~dT 282 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQD-VPS-LLPETILADPSGSEPSTSNGSALVSADT 282 (490)
T ss_pred cccchHHhhhhheeeeeccchhh-eeceeecCchhheeeeecccccc-ccc-ccchhhhcCccCCCCCccCCceEEecch
Confidence 34445556677777777664321 11111223567777665544431 111 1111222222111111113334444555
Q ss_pred CCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCC
Q 038320 314 LCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSS 393 (467)
Q Consensus 314 l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~ 393 (467)
...|+++|+++|.++. +.+...-. |+++.|++++|.|+.. ..+..+++|+.||+++|.++ .+..+-..+.+
T Consensus 283 Wq~LtelDLS~N~I~~-iDESvKL~-----Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGN 353 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQ-IDESVKLA-----PKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGN 353 (490)
T ss_pred Hhhhhhccccccchhh-hhhhhhhc-----cceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcC
Confidence 6778888888888763 22333333 3788888988888743 34777888899999998887 44455556778
Q ss_pred CCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCCCC
Q 038320 394 LRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPR 456 (467)
Q Consensus 394 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~~ 456 (467)
++.|.|++|.+.. -..+.++-+|..||+++|++...-....++++|-|+.+.|.+|++...
T Consensus 354 IKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 354 IKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred EeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 8888899888753 245667788889999999876544444688888899999999977643
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.18 E-value=4.9e-11 Score=117.65 Aligned_cols=201 Identities=31% Similarity=0.441 Sum_probs=141.0
Q ss_pred CEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCC-CCCEEECCCcCCCCCCCchhhhcCCCCCCC
Q 038320 143 RYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLS-SLQYLNLEGVDLSKAGSSWVQATNMLPSLS 221 (467)
Q Consensus 143 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~-~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~ 221 (467)
..++...+.+...+ ..+..++.++.|++.+|.++.++.. ..... +|+.|++++|.+.... ..+..+++|+
T Consensus 96 ~~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i~~~----~~~~~~nL~~L~l~~N~i~~l~----~~~~~l~~L~ 166 (394)
T COG4886 96 PSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPL----IGLLKSNLKELDLSDNKIESLP----SPLRNLPNLK 166 (394)
T ss_pred ceeeccccccccCc-hhhhcccceeEEecCCcccccCccc----cccchhhcccccccccchhhhh----hhhhcccccc
Confidence 35777777764232 2355667788888888888887775 45553 8888888888877652 2567788888
Q ss_pred EEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCC
Q 038320 222 ELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENS 301 (467)
Q Consensus 222 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 301 (467)
.|++++|++....+ .....++|+.|++++|++. .+|..+.....|+.+.+++|... ..+..+.++.++..+.+.+|+
T Consensus 167 ~L~l~~N~l~~l~~-~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 167 NLDLSFNDLSDLPK-LLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNK 243 (394)
T ss_pred ccccCCchhhhhhh-hhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCce
Confidence 88888888877654 2336778888888888886 56665555666888888888533 345556777788888888877
Q ss_pred CCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccc
Q 038320 302 LIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSL 364 (467)
Q Consensus 302 l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l 364 (467)
+ ...+..++.++++++|++++|.++.... +.... +++.|++++|.+....+...
T Consensus 244 ~--~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~-----~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 244 L--EDLPESIGNLSNLETLDLSNNQISSISS--LGSLT-----NLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred e--eeccchhccccccceecccccccccccc--ccccC-----ccCEEeccCccccccchhhh
Confidence 6 3335667777788888888888775443 44444 78888888888776554433
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.16 E-value=1.1e-12 Score=125.89 Aligned_cols=174 Identities=33% Similarity=0.473 Sum_probs=111.5
Q ss_pred CCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEec
Q 038320 243 SLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDL 322 (467)
Q Consensus 243 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l 322 (467)
--...|++.|++. ++|..+..+..|+.+.++.|.+. .+|..+.++..|++++++.|++ ..+|..++.++ |+.|-+
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nql--S~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQL--SHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchh--hcCChhhhcCc-ceeEEE
Confidence 3345667777765 66666666667777777777766 5666777777777777777776 45555555553 666666
Q ss_pred cCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCC
Q 038320 323 SGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNN 402 (467)
Q Consensus 323 ~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n 402 (467)
++|+++ .+|..++... .|..|+.+.|++. .+|..++.+.+|+.|.+..|++. .+|..+. .-.|..||+|.|
T Consensus 151 sNNkl~-~lp~~ig~~~-----tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScN 221 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLP-----TLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCN 221 (722)
T ss_pred ecCccc-cCCcccccch-----hHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccC
Confidence 666665 3444444332 5666666666665 44566666666777777666666 5555555 334666677777
Q ss_pred cCcccChhhhcCCCCCCEEeCcCCCCccc
Q 038320 403 LMDGTIPKSLGKLSHLVVLDISGNPWIGL 431 (467)
Q Consensus 403 ~l~~~~p~~l~~l~~L~~L~l~~n~~~~~ 431 (467)
+++ .+|-.|.+++.|++|-|.+|++...
T Consensus 222 kis-~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 222 KIS-YLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred cee-ecchhhhhhhhheeeeeccCCCCCC
Confidence 665 6666667777777777777766543
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.15 E-value=2.4e-11 Score=103.35 Aligned_cols=109 Identities=28% Similarity=0.361 Sum_probs=32.5
Q ss_pred cCCCCCCEEeCCCCCCCCCCCCcccC-CCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhc-CC
Q 038320 112 LDLKHLNYLDLSLNNFRGSRIPNFLG-SLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWL-SR 189 (467)
Q Consensus 112 ~~l~~L~~L~L~~n~i~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l-~~ 189 (467)
.+..++++|+|++|.|+.. +.++ .+.+|+.|++++|.++ .++ .+..+++|++|++++|.++.+... + ..
T Consensus 16 ~n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~~~----l~~~ 86 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSISEG----LDKN 86 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHH----HHHH
T ss_pred ccccccccccccccccccc---cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccccc----hHHh
Confidence 4445678888888877732 2343 4677888888888776 343 366777778888887777765432 2 24
Q ss_pred CCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCc
Q 038320 190 LSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLF 231 (467)
Q Consensus 190 l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 231 (467)
+++|++|++++|.+..... ...+..+++|+.|++.+|.+.
T Consensus 87 lp~L~~L~L~~N~I~~l~~--l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNE--LEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TT--EEE-TTS---SCCC--CGGGGG-TT--EEE-TT-GGG
T ss_pred CCcCCEEECcCCcCCChHH--hHHHHcCCCcceeeccCCccc
Confidence 6677777777776665432 234445555555555555554
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.12 E-value=1.8e-12 Score=124.32 Aligned_cols=195 Identities=28% Similarity=0.389 Sum_probs=156.0
Q ss_pred CCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEe
Q 038320 217 LPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELD 296 (467)
Q Consensus 217 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 296 (467)
+.--...+++.|++... |..+..+..|+.+.+..|.+. .+|..+.++..|..++++.|++. .+|..+..++ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~el-p~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSEL-PEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccccC-chHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 44445678888888765 446777788888889888886 78888999999999999999988 7777777776 89999
Q ss_pred CCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEcc
Q 038320 297 LSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLW 376 (467)
Q Consensus 297 L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~ 376 (467)
+++|++ ..+|..++..+.|..||.+.|++. ..|..+..+. +|+.|.+..|++. .+|..+.. -.|..||++
T Consensus 150 ~sNNkl--~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~-----slr~l~vrRn~l~-~lp~El~~-LpLi~lDfS 219 (722)
T KOG0532|consen 150 VSNNKL--TSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLT-----SLRDLNVRRNHLE-DLPEELCS-LPLIRLDFS 219 (722)
T ss_pred EecCcc--ccCCcccccchhHHHhhhhhhhhh-hchHHhhhHH-----HHHHHHHhhhhhh-hCCHHHhC-Cceeeeecc
Confidence 999998 678888888899999999999886 4556666666 8999999999888 45666664 468999999
Q ss_pred CCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCC---CCCCEEeCcCCC
Q 038320 377 GNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKL---SHLVVLDISGNP 427 (467)
Q Consensus 377 ~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~l~~n~ 427 (467)
.|+++ .+|..|.++..|++|-|.+|.+. .-|..++.. .=.|+|+..-|+
T Consensus 220 cNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 220 CNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred cCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 99998 88999999999999999999997 556666543 335677777774
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=1.1e-10 Score=99.31 Aligned_cols=61 Identities=36% Similarity=0.527 Sum_probs=9.9
Q ss_pred CCCCCCEEEcCCCcCCCCCCccCC-CCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCC
Q 038320 138 SLEKLRYLNLSGASFAGNIPPSFG-NLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSK 205 (467)
Q Consensus 138 ~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 205 (467)
+..++++|+|++|.|. .+. .++ .+.+|+.|++++|.++.++. +..++.|+.|++++|.++.
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~-----l~~L~~L~~L~L~~N~I~~ 78 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKLEG-----LPGLPRLKTLDLSNNRISS 78 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT---------TT--EEE--SS---S
T ss_pred cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccccC-----ccChhhhhhcccCCCCCCc
Confidence 3445566666666655 222 233 34555555555555554432 3334444444444444433
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.04 E-value=9.4e-11 Score=123.93 Aligned_cols=109 Identities=36% Similarity=0.378 Sum_probs=73.9
Q ss_pred CCCCCCEEeCCCCC--CCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCC
Q 038320 113 DLKHLNYLDLSLNN--FRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRL 190 (467)
Q Consensus 113 ~l~~L~~L~L~~n~--i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l 190 (467)
.+++|+.|-+.+|. +... ...+|..++.|++||+++|.-.+.+|..++.+-+||+|+++++.+..+|.. +.++
T Consensus 543 ~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~----l~~L 617 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSG----LGNL 617 (889)
T ss_pred CCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchH----HHHH
Confidence 34467777777765 3321 334577788888888887766667888888888888888888887777776 7777
Q ss_pred CCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCc
Q 038320 191 SSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACG 229 (467)
Q Consensus 191 ~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 229 (467)
+.|.+|++..+...... +.....+++|++|.+....
T Consensus 618 k~L~~Lnl~~~~~l~~~---~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESI---PGILLELQSLRVLRLPRSA 653 (889)
T ss_pred Hhhheeccccccccccc---cchhhhcccccEEEeeccc
Confidence 78888877776554443 2233446677777665543
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.02 E-value=6e-11 Score=105.50 Aligned_cols=212 Identities=21% Similarity=0.266 Sum_probs=133.7
Q ss_pred ccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCC
Q 038320 104 EGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDD 183 (467)
Q Consensus 104 ~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~ 183 (467)
...+|..+.-+++|+.+.++.|.-. .+-+....=+.|+++.+.+..++ ..|. +--...+....-+. -+......
T Consensus 203 ~~~l~f~l~~f~~l~~~~~s~~~~~--~i~~~~~~kptl~t~~v~~s~~~-~~~~-l~pe~~~~D~~~~E--~~t~~G~~ 276 (490)
T KOG1259|consen 203 PNRLSFNLNAFRNLKTLKFSALSTE--NIVDIELLKPTLQTICVHNTTIQ-DVPS-LLPETILADPSGSE--PSTSNGSA 276 (490)
T ss_pred ccccccchHHhhhhheeeeeccchh--heeceeecCchhheeeeeccccc-cccc-ccchhhhcCccCCC--CCccCCce
Confidence 3445666777788888888877533 23333333466777777766554 1111 11111111111110 00001111
Q ss_pred hhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhcc
Q 038320 184 VEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLL 263 (467)
Q Consensus 184 ~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 263 (467)
...+.....|+.+||++|.++.... ...-.|+++.|++++|.+..... +..+++|+.||+++|.++ .+..|-.
T Consensus 277 ~~~~dTWq~LtelDLS~N~I~~iDE----SvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls-~~~Gwh~ 349 (490)
T KOG1259|consen 277 LVSADTWQELTELDLSGNLITQIDE----SVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLA-ECVGWHL 349 (490)
T ss_pred EEecchHhhhhhccccccchhhhhh----hhhhccceeEEeccccceeeehh--hhhcccceEeecccchhH-hhhhhHh
Confidence 1113345678888888888877642 45557888888888888876543 777888999999988876 4556666
Q ss_pred CCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCc
Q 038320 264 NISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGE 330 (467)
Q Consensus 264 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 330 (467)
++.++++|.+++|.+... +.+..+-+|..||+.+|++-.-+-...++++|.|+.+.+.+|.+.+.
T Consensus 350 KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 788888999998887632 34666777888899988872222334678888899998888887753
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.00 E-value=2.6e-10 Score=120.66 Aligned_cols=163 Identities=24% Similarity=0.308 Sum_probs=104.3
Q ss_pred CccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhc
Q 038320 108 SPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWL 187 (467)
Q Consensus 108 ~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l 187 (467)
...|..++.|++|||++|.--+ .+|..++.+-+||+|+++++.+. .+|..++++.+|.+|++..+......+. ..
T Consensus 564 ~~ff~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~---i~ 638 (889)
T KOG4658|consen 564 GEFFRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPG---IL 638 (889)
T ss_pred HHHHhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccc---hh
Confidence 3457889999999999976544 49999999999999999999998 8999999999999999998764433322 15
Q ss_pred CCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCc----EEEccCCcCCCCcchhcc
Q 038320 188 SRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLL----FLDLSSNDFNSSIPQWLL 263 (467)
Q Consensus 188 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~----~L~l~~n~l~~~~~~~l~ 263 (467)
..+.+|++|.+........ ......+..+.+|+.+....... ..-..+..++.|. .+.+.++.. ...+..+.
T Consensus 639 ~~L~~Lr~L~l~~s~~~~~-~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~ 714 (889)
T KOG4658|consen 639 LELQSLRVLRLPRSALSND-KLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSK-RTLISSLG 714 (889)
T ss_pred hhcccccEEEeeccccccc-hhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhccccc-ceeecccc
Confidence 5699999999977652222 11234555566666665533322 0011112222222 222222221 12334455
Q ss_pred CCCCCCEEeccCCccc
Q 038320 264 NISKLAHLDLSANNLQ 279 (467)
Q Consensus 264 ~l~~L~~L~l~~n~l~ 279 (467)
.+.+|+.|.+.++...
T Consensus 715 ~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 715 SLGNLEELSILDCGIS 730 (889)
T ss_pred cccCcceEEEEcCCCc
Confidence 5666666666666654
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.93 E-value=8.3e-11 Score=116.34 Aligned_cols=244 Identities=31% Similarity=0.307 Sum_probs=142.6
Q ss_pred cCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCC
Q 038320 112 LDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLS 191 (467)
Q Consensus 112 ~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~ 191 (467)
..+..++.++++.|.+.. +-..+..+++|..|++.+|.+. .+...+..+++|++|++++|.++.+.. +..++
T Consensus 69 ~~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~-----l~~l~ 140 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG-----LSTLT 140 (414)
T ss_pred HHhHhHHhhccchhhhhh--hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc-----hhhcc
Confidence 355666677777777653 3344666778888888888776 343336678888888888888776654 56666
Q ss_pred CCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCC-ccccCCCCCcEEEccCCcCCCCcchhccCCCCCCE
Q 038320 192 SLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPP-LSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAH 270 (467)
Q Consensus 192 ~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 270 (467)
.|+.|++++|.++... .+..++.|+.+++++|++....+ . ...+.+++.+++.+|.+... ..+..+..+..
T Consensus 141 ~L~~L~l~~N~i~~~~-----~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~ 212 (414)
T KOG0531|consen 141 LLKELNLSGNLISDIS-----GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVL 212 (414)
T ss_pred chhhheeccCcchhcc-----CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHH
Confidence 7888888888777654 45557777888888887776654 2 45667777777777766422 22333334444
Q ss_pred EeccCCccccccchhhhCCC--CCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccE
Q 038320 271 LDLSANNLQGNIPDAFANMT--SLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLES 348 (467)
Q Consensus 271 L~l~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~ 348 (467)
+++..|.++..-+ +..+. +|+.+++++|.+ ...+..+..+..+..+++..|++...-. +... +.+..
T Consensus 213 ~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i--~~~~~~~~~~~~l~~l~~~~n~~~~~~~--~~~~-----~~~~~ 281 (414)
T KOG0531|consen 213 LSLLDNKISKLEG--LNELVMLHLRELYLSGNRI--SRSPEGLENLKNLPVLDLSSNRISNLEG--LERL-----PKLSE 281 (414)
T ss_pred hhcccccceeccC--cccchhHHHHHHhcccCcc--ccccccccccccccccchhhcccccccc--cccc-----chHHH
Confidence 4666666552221 11222 366777777766 2222445566667777777666553111 1111 13344
Q ss_pred EECcCCCCCcC---CCcc-ccCCCCCCEEEccCCcCcc
Q 038320 349 LDLGQNNLGGF---LPNS-LGQLENLKILQLWGNLFRG 382 (467)
Q Consensus 349 L~L~~n~i~~~---~~~~-l~~l~~L~~L~l~~n~l~~ 382 (467)
+....+.+... .... ....+.++.+.+..|....
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 282 LWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 44444443311 1111 3445566666666665554
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.79 E-value=5.3e-10 Score=110.59 Aligned_cols=243 Identities=30% Similarity=0.332 Sum_probs=137.7
Q ss_pred CCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCC
Q 038320 137 GSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNM 216 (467)
Q Consensus 137 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~ 216 (467)
..+..++.++++.|.+. .+-..+..+++|+.|++.+|.+..+... +..+++|++|++++|.++... .+..
T Consensus 69 ~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i~~~----l~~~~~L~~L~ls~N~I~~i~-----~l~~ 138 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEKIENL----LSSLVNLQVLDLSFNKITKLE-----GLST 138 (414)
T ss_pred HHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchhhcccc----hhhhhcchheecccccccccc-----chhh
Confidence 45667777778888776 3344477888889999998888876654 567888888888888887764 5566
Q ss_pred CCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcc-hhccCCCCCCEEeccCCccccccchhhhCCCCCCEE
Q 038320 217 LPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIP-QWLLNISKLAHLDLSANNLQGNIPDAFANMTSLREL 295 (467)
Q Consensus 217 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 295 (467)
++.|+.|++++|.+.... .+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+... ..+..+..+..+
T Consensus 139 l~~L~~L~l~~N~i~~~~--~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~ 213 (414)
T KOG0531|consen 139 LTLLKELNLSGNLISDIS--GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLL 213 (414)
T ss_pred ccchhhheeccCcchhcc--CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHh
Confidence 666888888888776543 33446777777777777764333 1 35566777777777766522 222233344444
Q ss_pred eCCCCCCCCCCCcccccCCCC--CCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEE
Q 038320 296 DLSENSLIGGQIPKDLGSLCN--LWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKIL 373 (467)
Q Consensus 296 ~L~~n~l~~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L 373 (467)
++..|.+ ... ..+..+.. |+.+++++|.+.... ..+..+. .+..|++..|++... ..+...+.+..+
T Consensus 214 ~l~~n~i-~~~--~~l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~-----~l~~l~~~~n~~~~~--~~~~~~~~~~~~ 282 (414)
T KOG0531|consen 214 SLLDNKI-SKL--EGLNELVMLHLRELYLSGNRISRSP-EGLENLK-----NLPVLDLSSNRISNL--EGLERLPKLSEL 282 (414)
T ss_pred hcccccc-eec--cCcccchhHHHHHHhcccCcccccc-ccccccc-----cccccchhhcccccc--ccccccchHHHh
Confidence 5555555 111 11112222 566666666554321 1122222 455566665555432 223334444444
Q ss_pred EccCCcCccc---cccc-ccCCCCCCEEECcCCcCc
Q 038320 374 QLWGNLFRGS---IPES-IGNLSSLRELYLHNNLMD 405 (467)
Q Consensus 374 ~l~~n~l~~~---~~~~-l~~~~~L~~L~Ls~n~l~ 405 (467)
....+.+... .... ....+.+..+.+..|.+.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (414)
T KOG0531|consen 283 WLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIR 318 (414)
T ss_pred ccCcchhcchhhhhccccccccccccccccccCccc
Confidence 4444443311 1111 233455555555555544
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.79 E-value=4.3e-09 Score=73.54 Aligned_cols=59 Identities=42% Similarity=0.560 Sum_probs=29.4
Q ss_pred CccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCc
Q 038320 345 SLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNL 403 (467)
Q Consensus 345 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~ 403 (467)
+|++|++++|+++...+..|..+++|++|++++|.++...+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555554444444555555555555555544444444555555555555544
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.78 E-value=3.8e-09 Score=73.85 Aligned_cols=59 Identities=32% Similarity=0.481 Sum_probs=29.7
Q ss_pred CCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCC
Q 038320 393 SLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYS 452 (467)
Q Consensus 393 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~ 452 (467)
+|++|++++|+++...+..|..+++|++|++++|++.+..+. .|.++++|+.|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~-~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPD-AFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETT-TTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHH-HHcCCCCCCEEeCcCCc
Confidence 445555555555433334455555555555555555433333 45555555555555553
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=9.8e-11 Score=104.07 Aligned_cols=181 Identities=28% Similarity=0.290 Sum_probs=98.7
Q ss_pred CCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCCh-hhcCCCCCCC
Q 038320 116 HLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDV-EWLSRLSSLQ 194 (467)
Q Consensus 116 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~-~~l~~l~~L~ 194 (467)
.|++|||+...++...+...+..|.+|+.|.+.++++.+.+...+..-.+|+.|+++.+.- +...+. .-+.+|+.|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG--~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSG--FTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccc--cchhHHHHHHHhhhhHh
Confidence 5777888777766544455566777788888888777766666677777777777766431 111111 0134455555
Q ss_pred EEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCC---CCcchhccCCCCCCEE
Q 038320 195 YLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFN---SSIPQWLLNISKLAHL 271 (467)
Q Consensus 195 ~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L 271 (467)
.|++++|.+...... .....-- ++|..|+++++.-. ..+......+++|.+|
T Consensus 264 ~LNlsWc~l~~~~Vt-v~V~his------------------------e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVT-VAVAHIS------------------------ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred hcCchHhhccchhhh-HHHhhhc------------------------hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 555555544333211 0011111 34455555543211 1122223456777777
Q ss_pred eccCCcc-ccccchhhhCCCCCCEEeCCCCCCCCCCCcc---cccCCCCCCEEeccCCc
Q 038320 272 DLSANNL-QGNIPDAFANMTSLRELDLSENSLIGGQIPK---DLGSLCNLWDLDLSGND 326 (467)
Q Consensus 272 ~l~~n~l-~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~l~~l~~L~~L~l~~n~ 326 (467)
|+++|.. +......+-+++.|++|.++.|.. .+|. .+...|+|.+|++.++-
T Consensus 319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~---i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD---IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ccccccccCchHHHHHHhcchheeeehhhhcC---CChHHeeeeccCcceEEEEecccc
Confidence 7766543 323334455677777777777743 3333 34566777777776653
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.71 E-value=2.6e-09 Score=93.90 Aligned_cols=240 Identities=21% Similarity=0.196 Sum_probs=140.0
Q ss_pred CCCCCCEEECCCCcCcccCCc----cccCCCCCcEEEccCCcCC---CCcc-------hhccCCCCCCEEeccCCccccc
Q 038320 216 MLPSLSELHLPACGLFEFPPL----SVVNFSSLLFLDLSSNDFN---SSIP-------QWLLNISKLAHLDLSANNLQGN 281 (467)
Q Consensus 216 ~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~l~---~~~~-------~~l~~l~~L~~L~l~~n~l~~~ 281 (467)
.+..+.++++++|.+...... .+.+-.+|+..++++-... ..++ ..+.+|++|+..+++.|.+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 344455555555554433222 2233455555555542211 1112 2345677777777777777655
Q ss_pred cchh----hhCCCCCCEEeCCCCCCCCCC----Ccc---------cccCCCCCCEEeccCCcCCCchhhHHHhhhcccCC
Q 038320 282 IPDA----FANMTSLRELDLSENSLIGGQ----IPK---------DLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANS 344 (467)
Q Consensus 282 ~~~~----l~~l~~L~~L~L~~n~l~~~~----~~~---------~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~ 344 (467)
.|.. ++..+.|.+|.|++|.+ +.. +-. ....-|.|+.+....|++..-....+.. ......
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~-~l~sh~ 185 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAA-LLESHE 185 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHH-HHHhhc
Confidence 5443 45667788888887766 211 111 1233467888888888876433322222 222224
Q ss_pred CccEEECcCCCCCcCC-----CccccCCCCCCEEEccCCcCccc----ccccccCCCCCCEEECcCCcCcccChhhh---
Q 038320 345 SLESLDLGQNNLGGFL-----PNSLGQLENLKILQLWGNLFRGS----IPESIGNLSSLRELYLHNNLMDGTIPKSL--- 412 (467)
Q Consensus 345 ~L~~L~L~~n~i~~~~-----~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l--- 412 (467)
.|+++.+..|.|.-.- .-.+..+.+|+.||+..|.++-. +...+..++.|+.|.+..|-++......+
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 7888888888776321 11234567888888888887632 23345667778889998888765433222
Q ss_pred ---cCCCCCCEEeCcCCCCcccCCh------hhhCCCCCCCEEeccCCCCCCCc
Q 038320 413 ---GKLSHLVVLDISGNPWIGLVTE------VHFSKLKNLKELHIAKYSLAPRL 457 (467)
Q Consensus 413 ---~~l~~L~~L~l~~n~~~~~~~~------~~~~~l~~L~~l~l~~n~i~~~~ 457 (467)
...|+|..|...+|-.-+.+.. ..=..+|-|..|.+.+|+|.+..
T Consensus 266 f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~ 319 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELA 319 (388)
T ss_pred hhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHH
Confidence 2468888888888876543321 11235777888888888887543
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.1e-09 Score=97.44 Aligned_cols=181 Identities=21% Similarity=0.187 Sum_probs=130.9
Q ss_pred CCCCEEeccCCccccc-cchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCc-CCCchhhHHHhhhcccC
Q 038320 266 SKLAHLDLSANNLQGN-IPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGND-LDGEIIEFVDRLSKCAN 343 (467)
Q Consensus 266 ~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~~~~~~~ 343 (467)
+.|+.+|+++..++-. +-..+..|.+|+.|.+.++++ ++.+...+.+-.+|+.|+++.+. ++......+- ..+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~L-dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~----~sc 259 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRL-DDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLL----SSC 259 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhcccccccc-CcHHHHHHhccccceeeccccccccchhHHHHHH----Hhh
Confidence 4589999999887633 334567899999999999999 88888888999999999999764 4433322221 223
Q ss_pred CCccEEECcCCCCCcCCC-cccc-CCCCCCEEEccCCcCc---ccccccccCCCCCCEEECcCC-cCcccChhhhcCCCC
Q 038320 344 SSLESLDLGQNNLGGFLP-NSLG-QLENLKILQLWGNLFR---GSIPESIGNLSSLRELYLHNN-LMDGTIPKSLGKLSH 417 (467)
Q Consensus 344 ~~L~~L~L~~n~i~~~~~-~~l~-~l~~L~~L~l~~n~l~---~~~~~~l~~~~~L~~L~Ls~n-~l~~~~p~~l~~l~~ 417 (467)
.+|..|+++.|.++.... ..+. --++|+.|+++++.-. ..+..-...+|+|.+||||+| .++......+.+++.
T Consensus 260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~ 339 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY 339 (419)
T ss_pred hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence 489999999998764322 1222 2367999999987422 122222357999999999986 566667778889999
Q ss_pred CCEEeCcCCCCcccCChhhhCCCCCCCEEeccCC
Q 038320 418 LVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKY 451 (467)
Q Consensus 418 L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n 451 (467)
|++|.++.|..........+...|+|.+|++.++
T Consensus 340 L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 340 LQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred heeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 9999999997543222225778899999999988
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.59 E-value=1.1e-08 Score=90.07 Aligned_cols=193 Identities=26% Similarity=0.258 Sum_probs=110.2
Q ss_pred ccCCCCCcEEEccCCcCCCCcch----hccCCCCCCEEeccCCccccc----cc---------hhhhCCCCCCEEeCCCC
Q 038320 238 VVNFSSLLFLDLSSNDFNSSIPQ----WLLNISKLAHLDLSANNLQGN----IP---------DAFANMTSLRELDLSEN 300 (467)
Q Consensus 238 l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~l~~n~l~~~----~~---------~~l~~l~~L~~L~L~~n 300 (467)
+.+||.|+..++++|-+....|. .+.+-+.|++|.+++|.+... +- .-..+-|.|+++....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 33455555555555555444333 234455566666666654311 11 11234567777777777
Q ss_pred CCCCCCCc---ccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcC----CCccccCCCCCCEE
Q 038320 301 SLIGGQIP---KDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGF----LPNSLGQLENLKIL 373 (467)
Q Consensus 301 ~l~~~~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L 373 (467)
++-.+..- ..+..-..|+.+.+..|.+.......+.......+.+|+.|++..|.++.. +...+...+.|+.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 77322211 113333577888888887776655444443333344788888888877632 33345566778888
Q ss_pred EccCCcCcccccccc------cCCCCCCEEECcCCcCcccChhh-----h--cCCCCCCEEeCcCCCCcc
Q 038320 374 QLWGNLFRGSIPESI------GNLSSLRELYLHNNLMDGTIPKS-----L--GKLSHLVVLDISGNPWIG 430 (467)
Q Consensus 374 ~l~~n~l~~~~~~~l------~~~~~L~~L~Ls~n~l~~~~p~~-----l--~~l~~L~~L~l~~n~~~~ 430 (467)
.+..|.++.....++ ...|+|+.|...+|...+.+... + ..+|-|..|.+.+|++..
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 888887765433322 13577888888877665432221 1 246778888888888764
No 47
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.57 E-value=9.7e-08 Score=61.06 Aligned_cols=38 Identities=53% Similarity=1.059 Sum_probs=29.5
Q ss_pred HhhHHHHHHhHhcCC-CCCCCCCCCCC---CCCCCcccEEec
Q 038320 37 QNEKEALLKIKASVT-DPSGRLSSWTG---EDCCKWEGVICD 74 (467)
Q Consensus 37 ~~~~~~l~~~~~~~~-~~~~~~~~w~~---~~~c~w~gv~c~ 74 (467)
++|+++|++||+++. +|.+.+.+|+. .+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 579999999999998 46678899953 699999999995
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.49 E-value=2.2e-09 Score=106.26 Aligned_cols=103 Identities=29% Similarity=0.325 Sum_probs=56.4
Q ss_pred CccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCccccccc-ccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeC
Q 038320 345 SLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPES-IGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDI 423 (467)
Q Consensus 345 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l 423 (467)
.++.|+|++|++++. +.+..++.|++|||++|.++ .+|.. ...| +|+.|++++|.++.. ..+.++++|+.||+
T Consensus 188 ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~LksL~~LDl 261 (1096)
T KOG1859|consen 188 ALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTL--RGIENLKSLYGLDL 261 (1096)
T ss_pred Hhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhh--hhHHhhhhhhccch
Confidence 456666666666543 25556666666666666665 33332 2223 266666666666522 34456666666666
Q ss_pred cCCCCcccCChhhhCCCCCCCEEeccCCCC
Q 038320 424 SGNPWIGLVTEVHFSKLKNLKELHIAKYSL 453 (467)
Q Consensus 424 ~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i 453 (467)
++|-+.+.-.-..++.+..|+.|+|.||++
T Consensus 262 syNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 666555433222344555666666666644
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=3.1e-08 Score=88.43 Aligned_cols=84 Identities=19% Similarity=0.197 Sum_probs=58.8
Q ss_pred CCCCCCEEEccCCcCcccc-cccccCCCCCCEEECcCCcCccc-ChhhhcCCCCCCEEeCcCCCCcccCChh-----hhC
Q 038320 366 QLENLKILQLWGNLFRGSI-PESIGNLSSLRELYLHNNLMDGT-IPKSLGKLSHLVVLDISGNPWIGLVTEV-----HFS 438 (467)
Q Consensus 366 ~l~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~l~~n~~~~~~~~~-----~~~ 438 (467)
.+|++..+.+..|.+...- .......|.+..|+|+.|++.+. ..+.+.++++|..|.++.|++...+... .++
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa 276 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIA 276 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEe
Confidence 3567777777777665322 23455677788889998888643 3467888999999999999887655432 356
Q ss_pred CCCCCCEEecc
Q 038320 439 KLKNLKELHIA 449 (467)
Q Consensus 439 ~l~~L~~l~l~ 449 (467)
.+++++.|+=+
T Consensus 277 RL~~v~vLNGs 287 (418)
T KOG2982|consen 277 RLTKVQVLNGS 287 (418)
T ss_pred eccceEEecCc
Confidence 77888877644
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.40 E-value=3.4e-09 Score=104.94 Aligned_cols=125 Identities=34% Similarity=0.361 Sum_probs=56.9
Q ss_pred CCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCC
Q 038320 292 LRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLK 371 (467)
Q Consensus 292 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~ 371 (467)
|.+.+.+.|.+ .....++.-++.++.|+|++|+++.. +.+..++ +|+.|||++|.++.........+. |.
T Consensus 166 L~~a~fsyN~L--~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~-----~LkhLDlsyN~L~~vp~l~~~gc~-L~ 235 (1096)
T KOG1859|consen 166 LATASFSYNRL--VLMDESLQLLPALESLNLSHNKFTKV--DNLRRLP-----KLKHLDLSYNCLRHVPQLSMVGCK-LQ 235 (1096)
T ss_pred HhhhhcchhhH--HhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcc-----cccccccccchhccccccchhhhh-he
Confidence 34444444443 22223333444455555555554431 1333333 455555555555422222222333 55
Q ss_pred EEEccCCcCcccccccccCCCCCCEEECcCCcCccc-ChhhhcCCCCCCEEeCcCCCC
Q 038320 372 ILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGT-IPKSLGKLSHLVVLDISGNPW 428 (467)
Q Consensus 372 ~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~l~~n~~ 428 (467)
.|.+.+|.++. + ..+.++.+|+.||+++|-+.+. --..+..+..|+.|+|.||++
T Consensus 236 ~L~lrnN~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 236 LLNLRNNALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eeeecccHHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 56666665542 1 2244556666666666655432 112233445566666666654
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.35 E-value=1.8e-08 Score=93.88 Aligned_cols=59 Identities=20% Similarity=0.200 Sum_probs=28.1
Q ss_pred CCCCEEeCCCCCCCCC-CCCcccCCCCCCCEEEcCCCcCC-CCCCccC-CCCCcCCeeeccC
Q 038320 115 KHLNYLDLSLNNFRGS-RIPNFLGSLEKLRYLNLSGASFA-GNIPPSF-GNLSSLQILDLNT 173 (467)
Q Consensus 115 ~~L~~L~L~~n~i~~~-~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~l-~~l~~L~~L~l~~ 173 (467)
..||.|.++++.-.+. .+-..-.+++++++|++.+|... +..-..+ ..+++|++|++..
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~ 199 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHS 199 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcc
Confidence 4667777777653322 12223344666666666665421 1111111 2455555555554
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=2.6e-07 Score=82.61 Aligned_cols=226 Identities=20% Similarity=0.176 Sum_probs=116.8
Q ss_pred CCCEEEcCCCcCCCC--CCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCC
Q 038320 141 KLRYLNLSGASFAGN--IPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLP 218 (467)
Q Consensus 141 ~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~ 218 (467)
.++.|.+.++.+... ....-..++.++.+|+.+|.++... +....+.++|.|++|+++.|.+...+...+ ....
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWs-eI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~ 121 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWS-EIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLK 121 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHH-HHHHHHhcCccceEeeccCCcCCCccccCc---cccc
Confidence 444555666655421 1111134677788888888776422 222235677888888888887776553321 3455
Q ss_pred CCCEEECCCCcCccc-CCccccCCCCCcEEEccCCcCCCCc--chhccC-CCCCCEEeccCCcccc--ccchhhhCCCCC
Q 038320 219 SLSELHLPACGLFEF-PPLSVVNFSSLLFLDLSSNDFNSSI--PQWLLN-ISKLAHLDLSANNLQG--NIPDAFANMTSL 292 (467)
Q Consensus 219 ~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~--~~~l~~-l~~L~~L~l~~n~l~~--~~~~~l~~l~~L 292 (467)
+|+.|-+.+..+.-. ....+..+|.++.|.++.|.+.... ...... -+.+++++..+|.... .....-.-+|++
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv 201 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV 201 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence 677777776655322 2234455666677766666332110 000111 1234444444443220 000111235667
Q ss_pred CEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCC-chhhHHHhhhcccCCCccEEECcCCCCCcCCCc------ccc
Q 038320 293 RELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDG-EIIEFVDRLSKCANSSLESLDLGQNNLGGFLPN------SLG 365 (467)
Q Consensus 293 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~------~l~ 365 (467)
..+.+..|.+.+...-.....++.+..|+++.+++.. ...+.+..++ +|..|.++++.+.+.+.. -++
T Consensus 202 ~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~-----~l~dlRv~~~Pl~d~l~~~err~llIa 276 (418)
T KOG2982|consen 202 NSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFP-----QLVDLRVSENPLSDPLRGGERRFLLIA 276 (418)
T ss_pred hheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCc-----hhheeeccCCcccccccCCcceEEEEe
Confidence 7777777766433333445556666677777777653 1223333333 777777777766543221 234
Q ss_pred CCCCCCEEEc
Q 038320 366 QLENLKILQL 375 (467)
Q Consensus 366 ~l~~L~~L~l 375 (467)
.+++++.|+=
T Consensus 277 RL~~v~vLNG 286 (418)
T KOG2982|consen 277 RLTKVQVLNG 286 (418)
T ss_pred eccceEEecC
Confidence 5666666653
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.33 E-value=3e-08 Score=92.52 Aligned_cols=283 Identities=18% Similarity=0.121 Sum_probs=138.7
Q ss_pred CCCCEEEcCCCcCCCCCC--ccCCCCCcCCeeeccCccCCCCCCCChhhc-CCCCCCCEEECCCcC-CCCCCCchhhhcC
Q 038320 140 EKLRYLNLSGASFAGNIP--PSFGNLSSLQILDLNTFYYSSLESDDVEWL-SRLSSLQYLNLEGVD-LSKAGSSWVQATN 215 (467)
Q Consensus 140 ~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l-~~l~~L~~L~L~~n~-~~~~~~~~~~~~~ 215 (467)
..|+.|.++++.-.+.-+ ....+++++++|.+.++. .+....+..+ ..+++|++|++..|. ++.... .....
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~--~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L--k~la~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK--KITDSSLLSLARYCRKLRHLNLHSCSSITDVSL--KYLAE 213 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcce--eccHHHHHHHHHhcchhhhhhhcccchhHHHHH--HHHHH
Confidence 357888888876543322 234578888888887776 3443333222 356777777776632 222210 01223
Q ss_pred CCCCCCEEECCCCcC-cccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccc--cchhhhCCCCC
Q 038320 216 MLPSLSELHLPACGL-FEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGN--IPDAFANMTSL 292 (467)
Q Consensus 216 ~l~~L~~L~l~~n~~-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L 292 (467)
.+++|+++++++|.- .+. .+.....++..++.+.+.||.-.+. +...-+.+..+
T Consensus 214 gC~kL~~lNlSwc~qi~~~-----------------------gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i 270 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGN-----------------------GVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEI 270 (483)
T ss_pred hhhhHHHhhhccCchhhcC-----------------------cchHHhccchhhhhhhhcccccccHHHHHHHhccChHh
Confidence 455555555555532 210 1111223333344444443321100 00111233444
Q ss_pred CEEeCCCCCCCCCCC-cccccCCCCCCEEeccCCc-CCCchhhHHHhhhcccCCCccEEECcCCC-CCcCCCccc-cCCC
Q 038320 293 RELDLSENSLIGGQI-PKDLGSLCNLWDLDLSGND-LDGEIIEFVDRLSKCANSSLESLDLGQNN-LGGFLPNSL-GQLE 368 (467)
Q Consensus 293 ~~L~L~~n~l~~~~~-~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-i~~~~~~~l-~~l~ 368 (467)
..+++..|...++.. ...-..+..|+.++.+++. +++.+...++.-. ++|+.+.++.|+ +++.-...+ .+++
T Consensus 271 ~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~----~~L~~l~l~~c~~fsd~~ft~l~rn~~ 346 (483)
T KOG4341|consen 271 LKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHC----HNLQVLELSGCQQFSDRGFTMLGRNCP 346 (483)
T ss_pred hccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCC----CceEEEeccccchhhhhhhhhhhcCCh
Confidence 455544443322221 1122344566666666543 2333333333322 367777777664 332222222 3566
Q ss_pred CCCEEEccCCcCcc--cccccccCCCCCCEEECcCCcC-cccC----hhhhcCCCCCCEEeCcCCCCcccCChhhhCCCC
Q 038320 369 NLKILQLWGNLFRG--SIPESIGNLSSLRELYLHNNLM-DGTI----PKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLK 441 (467)
Q Consensus 369 ~L~~L~l~~n~l~~--~~~~~l~~~~~L~~L~Ls~n~l-~~~~----p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 441 (467)
.|+.+++..+.... .+...-.+++.|+.+.+++|.. ++.. ...-+....|..+.+++++.+......++..++
T Consensus 347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~ 426 (483)
T KOG4341|consen 347 HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR 426 (483)
T ss_pred hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc
Confidence 77777777665432 1222223567777777777743 3321 122234566777777777766555444666777
Q ss_pred CCCEEeccCCCC
Q 038320 442 NLKELHIAKYSL 453 (467)
Q Consensus 442 ~L~~l~l~~n~i 453 (467)
.|+.+++-+|+-
T Consensus 427 ~Leri~l~~~q~ 438 (483)
T KOG4341|consen 427 NLERIELIDCQD 438 (483)
T ss_pred ccceeeeechhh
Confidence 777777777743
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.06 E-value=9.5e-06 Score=68.87 Aligned_cols=106 Identities=20% Similarity=0.257 Sum_probs=56.1
Q ss_pred CCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCC
Q 038320 139 LEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLP 218 (467)
Q Consensus 139 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~ 218 (467)
+.+...+|+++|.+. .++ .|..+++|.+|.+.+|.++.+.+.. -..+++|+.|.|.+|.+..... ...+..+|
T Consensus 41 ~d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L---~~~~p~l~~L~LtnNsi~~l~d--l~pLa~~p 113 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDL---DTFLPNLKTLILTNNSIQELGD--LDPLASCP 113 (233)
T ss_pred ccccceecccccchh-hcc-cCCCccccceEEecCCcceeeccch---hhhccccceEEecCcchhhhhh--cchhccCC
Confidence 345566677776664 222 3556666677777777666665552 1234556666666665554432 22445555
Q ss_pred CCCEEECCCCcCcccCC---ccccCCCCCcEEEccC
Q 038320 219 SLSELHLPACGLFEFPP---LSVVNFSSLLFLDLSS 251 (467)
Q Consensus 219 ~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~~ 251 (467)
+|++|.+-+|.+..... ..+..+++|+.||+..
T Consensus 114 ~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 114 KLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 66666655555543322 1233445555555443
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.04 E-value=1.2e-06 Score=90.95 Aligned_cols=135 Identities=25% Similarity=0.315 Sum_probs=73.0
Q ss_pred CCCCEEeCCCCCCCCCCCCcccC-CCCCCCEEEcCCCcCCC-CCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCC
Q 038320 115 KHLNYLDLSLNNFRGSRIPNFLG-SLEKLRYLNLSGASFAG-NIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSS 192 (467)
Q Consensus 115 ~~L~~L~L~~n~i~~~~~~~~~~-~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~ 192 (467)
.+|++|+++|.......-|..++ .+|.|+.|.+.+-.+.. .+.....++|+|..||+++++++.+ .+++++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-----~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-----SGISRLKN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-----HHHhcccc
Confidence 46777777765433222222333 36777777777655532 1223345677777777777666655 22667777
Q ss_pred CCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCC------ccccCCCCCcEEEccCCcCCC
Q 038320 193 LQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPP------LSVVNFSSLLFLDLSSNDFNS 256 (467)
Q Consensus 193 L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~------~~l~~l~~L~~L~l~~n~l~~ 256 (467)
|+.|.+.+-.+..... ...+..+++|+.||+|......... +.-..+|+|+.||.+++.+..
T Consensus 197 Lq~L~mrnLe~e~~~~--l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQD--LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHHHhccCCCCCchhh--HHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 7777776665554221 3355566666666666554433220 111224555555555555443
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.01 E-value=2.3e-06 Score=88.76 Aligned_cols=153 Identities=26% Similarity=0.355 Sum_probs=80.0
Q ss_pred CCCEEeCCCCCCCCCCCccccc-CCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCC
Q 038320 291 SLRELDLSENSLIGGQIPKDLG-SLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLEN 369 (467)
Q Consensus 291 ~L~~L~L~~n~l~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~ 369 (467)
+|++|++++........+..++ .+|+|++|.+++-.+.... +..+. .++|+|..||+++.+++.. ..++.+++
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d---F~~lc-~sFpNL~sLDIS~TnI~nl--~GIS~Lkn 196 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD---FSQLC-ASFPNLRSLDISGTNISNL--SGISRLKN 196 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh---HHHHh-hccCccceeecCCCCccCc--HHHhcccc
Confidence 4555555554332333333333 3456666666554443221 11111 2334666666666666533 45566677
Q ss_pred CCEEEccCCcCcc-cccccccCCCCCCEEECcCCcCccc--Ch----hhhcCCCCCCEEeCcCCCCcccCChhhhCCCCC
Q 038320 370 LKILQLWGNLFRG-SIPESIGNLSSLRELYLHNNLMDGT--IP----KSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKN 442 (467)
Q Consensus 370 L~~L~l~~n~l~~-~~~~~l~~~~~L~~L~Ls~n~l~~~--~p----~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 442 (467)
|++|.+.+-.+.. ..-..+.++++|+.||+|..+.... +. +.-..+|+|+.||.+++.+.+.+.+.....-|+
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~ 276 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN 276 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence 7777666655542 1122345677777777776543321 11 222346777888888777776665544555555
Q ss_pred CCEEecc
Q 038320 443 LKELHIA 449 (467)
Q Consensus 443 L~~l~l~ 449 (467)
|+.+..-
T Consensus 277 L~~i~~~ 283 (699)
T KOG3665|consen 277 LQQIAAL 283 (699)
T ss_pred Hhhhhhh
Confidence 6555443
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.00 E-value=2.1e-07 Score=73.69 Aligned_cols=107 Identities=26% Similarity=0.385 Sum_probs=60.9
Q ss_pred CCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEe
Q 038320 193 LQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLD 272 (467)
Q Consensus 193 L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 272 (467)
+..++|++|.+.... +.+..+.....|+..++++|.+...++.....++.++.|++++|.++ .+|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~-davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIA-DAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHH-HHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 444455555443221 11334444555556666666666655555555566666666666665 5566666666666666
Q ss_pred ccCCccccccchhhhCCCCCCEEeCCCCCC
Q 038320 273 LSANNLQGNIPDAFANMTSLRELDLSENSL 302 (467)
Q Consensus 273 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 302 (467)
++.|.+. ..|..+..+.++.+|+..+|..
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCcc
Confidence 6666665 4455555566666666666654
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=4.1e-06 Score=53.58 Aligned_cols=36 Identities=33% Similarity=0.563 Sum_probs=15.3
Q ss_pred CCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCC
Q 038320 141 KLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYS 177 (467)
Q Consensus 141 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~ 177 (467)
+|++|++++|+++ .+|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 33333444444444444444443
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.98 E-value=2.5e-07 Score=73.25 Aligned_cols=59 Identities=27% Similarity=0.427 Sum_probs=27.6
Q ss_pred CCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCC
Q 038320 367 LENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNP 427 (467)
Q Consensus 367 l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~ 427 (467)
++.+++|++++|.++ .+|..+..++.|+.|+++.|.+. ..|+.+..+.++-.|+.-+|.
T Consensus 76 f~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 76 FPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred cchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCc
Confidence 334444444444444 34444444455555555555444 344444444444444444444
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.90 E-value=1.4e-05 Score=51.11 Aligned_cols=34 Identities=41% Similarity=0.643 Sum_probs=13.2
Q ss_pred CCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCC
Q 038320 394 LRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPW 428 (467)
Q Consensus 394 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~ 428 (467)
|++|++++|+++ .+|..+.++++|+.|++++|++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence 444444444443 2333344444444444444443
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.90 E-value=6.5e-05 Score=72.22 Aligned_cols=139 Identities=17% Similarity=0.194 Sum_probs=78.0
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCc-cCCCCCCCChhhcC
Q 038320 110 SVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTF-YYSSLESDDVEWLS 188 (467)
Q Consensus 110 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n-~~~~l~~~~~~~l~ 188 (467)
.+..++++++|++++|.++ .+|. + -.+|++|.+++|.-...+|..+ .++|++|++++| .+..+|
T Consensus 47 r~~~~~~l~~L~Is~c~L~--sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-------- 111 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIE--SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-------- 111 (426)
T ss_pred HHHHhcCCCEEEeCCCCCc--ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc--------
Confidence 3555688999999999777 4562 1 2368999998865544666544 357888998887 444333
Q ss_pred CCCCCCEEECCCcCCCCCCCchhhhcCCC-CCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCC
Q 038320 189 RLSSLQYLNLEGVDLSKAGSSWVQATNML-PSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISK 267 (467)
Q Consensus 189 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 267 (467)
++|+.|++..+..... ..+ ++|+.|.+.+++........-.-.++|++|++++|... ..|..+. .+
T Consensus 112 --~sLe~L~L~~n~~~~L--------~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~S 178 (426)
T PRK15386 112 --ESVRSLEIKGSATDSI--------KNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ES 178 (426)
T ss_pred --cccceEEeCCCCCccc--------ccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--cc
Confidence 2477777765543321 112 24666666433211000000001256777777776644 2333222 46
Q ss_pred CCEEeccCC
Q 038320 268 LAHLDLSAN 276 (467)
Q Consensus 268 L~~L~l~~n 276 (467)
|+.|+++.+
T Consensus 179 Lk~L~ls~n 187 (426)
T PRK15386 179 LQSITLHIE 187 (426)
T ss_pred CcEEEeccc
Confidence 677776654
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.83 E-value=2.6e-05 Score=66.25 Aligned_cols=110 Identities=24% Similarity=0.242 Sum_probs=78.1
Q ss_pred CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCC
Q 038320 115 KHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQ 194 (467)
Q Consensus 115 ~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~ 194 (467)
.....+||++|.+.. ...+..++.|.+|.+++|.|+..-|..-..+++|..|.+.+|.+..+..- ..+..||+|+
T Consensus 42 d~~d~iDLtdNdl~~---l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl--~pLa~~p~L~ 116 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK---LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL--DPLASCPKLE 116 (233)
T ss_pred cccceecccccchhh---cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc--chhccCCccc
Confidence 455678888887753 24566788888888888888855555445577888888888887765432 2277888888
Q ss_pred EEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCc
Q 038320 195 YLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACG 229 (467)
Q Consensus 195 ~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 229 (467)
+|.+-+|.++....--.-.+..+|+|+.||+.+-.
T Consensus 117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 88888888776543323356678889999887654
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.75 E-value=1.6e-05 Score=70.43 Aligned_cols=113 Identities=20% Similarity=0.237 Sum_probs=67.1
Q ss_pred cCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCC--cCCCCCCccCCCCCcCCeeeccCccCCCCCCCCh
Q 038320 107 ISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGA--SFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDV 184 (467)
Q Consensus 107 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~ 184 (467)
+..-.-.+..|+.|++.+..++. -..+..|++|++|.++.| .+++.++.....+++|+++++++|++..+.. +
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt---~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst--l 109 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT---LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST--L 109 (260)
T ss_pred cccccccccchhhhhhhccceee---cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc--c
Confidence 33344455666777776666552 234556778888888888 5555565555667888888888887764222 1
Q ss_pred hhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEE
Q 038320 185 EWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELH 224 (467)
Q Consensus 185 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~ 224 (467)
..+..+.+|..|++.+|..+.....-...+.-+++|++|+
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 2255666677777776665554322223334445555544
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.70 E-value=0.00013 Score=70.10 Aligned_cols=137 Identities=15% Similarity=0.170 Sum_probs=86.8
Q ss_pred ccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCC-cCCCchhhHHHhhhc
Q 038320 262 LLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGN-DLDGEIIEFVDRLSK 340 (467)
Q Consensus 262 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~~~~ 340 (467)
+..+.+++.|++++|.++ .+|. -.++|+.|.+++|.- -..+|..+ .++|+.|++++| .+. ..|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~n-LtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP-------- 111 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNN-LTTLPGSI--PEGLEKLTVCHCPEIS-GLP-------- 111 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCC-cccCCchh--hhhhhheEccCccccc-ccc--------
Confidence 445788999999999877 4552 234799999998655 34555544 358999999988 432 222
Q ss_pred ccCCCccEEECcCCCCCcCCCccccCC-CCCCEEEccCCcCc--ccccccccCCCCCCEEECcCCcCcccChhhhcCCCC
Q 038320 341 CANSSLESLDLGQNNLGGFLPNSLGQL-ENLKILQLWGNLFR--GSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSH 417 (467)
Q Consensus 341 ~~~~~L~~L~L~~n~i~~~~~~~l~~l-~~L~~L~l~~n~l~--~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~ 417 (467)
+.|+.|++..+.... +..+ ++|+.|.+.++... ..+|.. -.++|++|++++|... ..|..+- .+
T Consensus 112 ---~sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~S 178 (426)
T PRK15386 112 ---ESVRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ES 178 (426)
T ss_pred ---cccceEEeCCCCCcc-----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--cc
Confidence 368888887665432 1222 35777777543311 111211 1267999999988765 3444332 58
Q ss_pred CCEEeCcCCC
Q 038320 418 LVVLDISGNP 427 (467)
Q Consensus 418 L~~L~l~~n~ 427 (467)
|+.|+++.|.
T Consensus 179 Lk~L~ls~n~ 188 (426)
T PRK15386 179 LQSITLHIEQ 188 (426)
T ss_pred CcEEEecccc
Confidence 8999988764
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.49 E-value=3.3e-05 Score=78.37 Aligned_cols=18 Identities=22% Similarity=-0.068 Sum_probs=11.3
Q ss_pred cccCCCCCCEEEccCCcC
Q 038320 363 SLGQLENLKILQLWGNLF 380 (467)
Q Consensus 363 ~l~~l~~L~~L~l~~n~l 380 (467)
.+..+++++.+.+..+..
T Consensus 357 ~~~~~~~l~~~~l~~~~~ 374 (482)
T KOG1947|consen 357 ILRSCPKLTDLSLSYCGI 374 (482)
T ss_pred HHhcCCCcchhhhhhhhc
Confidence 334666777777776663
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=1.3e-05 Score=71.42 Aligned_cols=99 Identities=24% Similarity=0.296 Sum_probs=74.8
Q ss_pred CccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCccc-ChhhhcCCCCCCEEeC
Q 038320 345 SLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGT-IPKSLGKLSHLVVLDI 423 (467)
Q Consensus 345 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~l 423 (467)
+.+.|++.+|.++++ .....|+.|++|.|+-|.++.. ..+..|++|++|.|..|.|.+. -..-+.++|+|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 678888888888865 3456788999999999998843 3367899999999999988743 2245678999999999
Q ss_pred cCCCCcccCChh----hhCCCCCCCEEe
Q 038320 424 SGNPWIGLVTEV----HFSKLKNLKELH 447 (467)
Q Consensus 424 ~~n~~~~~~~~~----~~~~l~~L~~l~ 447 (467)
..|+-.|.-+.. .+.-+|+|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 999888766532 344567777664
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.26 E-value=0.00015 Score=64.29 Aligned_cols=104 Identities=25% Similarity=0.234 Sum_probs=56.8
Q ss_pred ccEEECcCCCCCcCCCccccCCCCCCEEEccCC--cCcccccccccCCCCCCEEECcCCcCccc-ChhhhcCCCCCCEEe
Q 038320 346 LESLDLGQNNLGGFLPNSLGQLENLKILQLWGN--LFRGSIPESIGNLSSLRELYLHNNLMDGT-IPKSLGKLSHLVVLD 422 (467)
Q Consensus 346 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n--~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~ 422 (467)
|+.|++.+..++.. ..+..+++|+.|.++.| ...+.++.....+|+|+++++++|++... -...+..+.+|..|+
T Consensus 45 le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld 122 (260)
T KOG2739|consen 45 LELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD 122 (260)
T ss_pred hhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence 34444444443321 23445667777777777 55555544455567777777777766521 112344566677777
Q ss_pred CcCCCCcccCCh--hhhCCCCCCCEEeccCC
Q 038320 423 ISGNPWIGLVTE--VHFSKLKNLKELHIAKY 451 (467)
Q Consensus 423 l~~n~~~~~~~~--~~~~~l~~L~~l~l~~n 451 (467)
+..|..+..--. ..|.-+++|.+++-...
T Consensus 123 l~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 123 LFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred cccCCccccccHHHHHHHHhhhhcccccccc
Confidence 777766552221 14555666666654443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=1.5e-05 Score=70.95 Aligned_cols=105 Identities=22% Similarity=0.273 Sum_probs=75.7
Q ss_pred CCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCC
Q 038320 113 DLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSS 192 (467)
Q Consensus 113 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~ 192 (467)
.+.+.+.|++.+|.++++ ....+|+.|++|.|+-|+|+. +. .+..|++|+.|.|..|.+..+.. +..+.++++
T Consensus 17 dl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIss-L~-pl~rCtrLkElYLRkN~I~sldE--L~YLknlps 89 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISS-LA-PLQRCTRLKELYLRKNCIESLDE--LEYLKNLPS 89 (388)
T ss_pred HHHHhhhhcccCCCccHH---HHHHhcccceeEEeecccccc-ch-hHHHHHHHHHHHHHhcccccHHH--HHHHhcCch
Confidence 355778888889888755 345678999999999999873 32 37789999999999988876543 344788899
Q ss_pred CCEEECCCcCCCCCCCc--hhhhcCCCCCCCEEE
Q 038320 193 LQYLNLEGVDLSKAGSS--WVQATNMLPSLSELH 224 (467)
Q Consensus 193 L~~L~L~~n~~~~~~~~--~~~~~~~l~~L~~L~ 224 (467)
|+.|.|..|.-.+.... -...+..+|+|++||
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999988876554321 122345577777775
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.06 E-value=0.0023 Score=51.94 Aligned_cols=37 Identities=14% Similarity=0.219 Sum_probs=11.9
Q ss_pred cCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccC
Q 038320 136 LGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNT 173 (467)
Q Consensus 136 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~ 173 (467)
|.++++|+.+.+.. .+...-...|.++++|+.+.+.+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred HhCCCCCCEEEECC-CeeEeChhhcccccccccccccc
Confidence 44444455554442 22212222344444444444443
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.05 E-value=0.00017 Score=73.03 Aligned_cols=225 Identities=24% Similarity=0.153 Sum_probs=107.0
Q ss_pred CCCCCCEEECCCCcCccc--CCccccCCCCCcEEEccCC-cCCCCc----chhccCCCCCCEEeccCCc-cccccchhhh
Q 038320 216 MLPSLSELHLPACGLFEF--PPLSVVNFSSLLFLDLSSN-DFNSSI----PQWLLNISKLAHLDLSANN-LQGNIPDAFA 287 (467)
Q Consensus 216 ~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~l~~n-~l~~~~----~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~ 287 (467)
.++.|+.+.+.++.-... .......++.|+.|+++++ ...... ......+++|+.++++.+. +++..-..++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356677776666633222 1233445667777777652 111111 1122345666666666665 4433333333
Q ss_pred C-CCCCCEEeCCCCC-CCCCCCcccccCCCCCCEEeccCCcCC-CchhhHHHhhhcccCCCccEEECcCCCCCcCCCccc
Q 038320 288 N-MTSLRELDLSENS-LIGGQIPKDLGSLCNLWDLDLSGNDLD-GEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSL 364 (467)
Q Consensus 288 ~-l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l 364 (467)
. +++|++|.+.+|. ++...+......++.|++|+++++... +.....+.. .+++++.|.+....
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~----~c~~l~~l~~~~~~--------- 332 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLK----NCPNLRELKLLSLN--------- 332 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHH----hCcchhhhhhhhcC---------
Confidence 2 6666666666555 322233333445566666666665433 111111111 12244443332221
Q ss_pred cCCCCCCEEEccCCcCc---ccccccccCCCCCCEEECcCCcCcccC-hhhhcCCCCC--------------CEEeCcCC
Q 038320 365 GQLENLKILQLWGNLFR---GSIPESIGNLSSLRELYLHNNLMDGTI-PKSLGKLSHL--------------VVLDISGN 426 (467)
Q Consensus 365 ~~l~~L~~L~l~~n~l~---~~~~~~l~~~~~L~~L~Ls~n~l~~~~-p~~l~~l~~L--------------~~L~l~~n 426 (467)
.++.++.+.+.+.... .........+++++.+.+..+...... ...+..|+.| +.|+++.+
T Consensus 333 -~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~ 411 (482)
T KOG1947|consen 333 -GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDC 411 (482)
T ss_pred -CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccC
Confidence 1334444444443321 122223457788888888777744322 2444555544 66666666
Q ss_pred CCcccCChhhhCC-CCCCCEEeccCCCCC
Q 038320 427 PWIGLVTEVHFSK-LKNLKELHIAKYSLA 454 (467)
Q Consensus 427 ~~~~~~~~~~~~~-l~~L~~l~l~~n~i~ 454 (467)
.....-.-..... +..+..+++.++...
T Consensus 412 ~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 412 RLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred ccccccchHHHhhhhhccccCCccCcccc
Confidence 5433322212333 555666777666443
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.96 E-value=0.0021 Score=52.23 Aligned_cols=94 Identities=18% Similarity=0.261 Sum_probs=34.9
Q ss_pred CccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCc
Q 038320 345 SLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDIS 424 (467)
Q Consensus 345 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~ 424 (467)
+|+.+.+..+ +.......+..+++++.+.+.+ .+.......|..+++|+.+++..+ +.......+.++ +|+.+.+.
T Consensus 36 ~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 36 SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 4455554442 3323334455555666666654 332222334555666666666544 332333445555 66666665
Q ss_pred CCCCcccCChhhhCCCCCCC
Q 038320 425 GNPWIGLVTEVHFSKLKNLK 444 (467)
Q Consensus 425 ~n~~~~~~~~~~~~~l~~L~ 444 (467)
. .+. .++...|.++++|+
T Consensus 112 ~-~~~-~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 112 S-NIT-KIEENAFKNCTKLK 129 (129)
T ss_dssp T-B-S-S----GGG------
T ss_pred C-Ccc-EECCccccccccCC
Confidence 4 222 23333566665553
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.05 E-value=0.0001 Score=73.43 Aligned_cols=189 Identities=29% Similarity=0.286 Sum_probs=108.4
Q ss_pred CCcEEEccCCcCCCCcc----hhccCCCCCCEEeccCCccccccchhh----hCC-CCCCEEeCCCCCCCC---CCCccc
Q 038320 243 SLLFLDLSSNDFNSSIP----QWLLNISKLAHLDLSANNLQGNIPDAF----ANM-TSLRELDLSENSLIG---GQIPKD 310 (467)
Q Consensus 243 ~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~l----~~l-~~L~~L~L~~n~l~~---~~~~~~ 310 (467)
.+..+++.+|.+..... ..+...+.|+.|++++|.+.+.-...+ ... ..+++|++..|.+.. ..+...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 36778888888765433 344567788888888888774332222 222 456667777776621 123445
Q ss_pred ccCCCCCCEEeccCCcCCCchhhHHHhhhc---ccCCCccEEECcCCCCCcC----CCccccCCCC-CCEEEccCCcCcc
Q 038320 311 LGSLCNLWDLDLSGNDLDGEIIEFVDRLSK---CANSSLESLDLGQNNLGGF----LPNSLGQLEN-LKILQLWGNLFRG 382 (467)
Q Consensus 311 l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~---~~~~~L~~L~L~~n~i~~~----~~~~l~~l~~-L~~L~l~~n~l~~ 382 (467)
+.....++.++++.|.+.......+..... ....++++|++.+|.++.. +...+...+. +..|++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 556677788888887765322221111111 1223677777777776632 1223344444 5567777777654
Q ss_pred c----ccccccCC-CCCCEEECcCCcCccc----ChhhhcCCCCCCEEeCcCCCCccc
Q 038320 383 S----IPESIGNL-SSLRELYLHNNLMDGT----IPKSLGKLSHLVVLDISGNPWIGL 431 (467)
Q Consensus 383 ~----~~~~l~~~-~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~l~~n~~~~~ 431 (467)
. ....+..+ +.+++++++.|.+++. +.+.+..++.++++.++.|++...
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 3 12233344 5667777777777654 344455566777777777776644
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.85 E-value=0.0001 Score=73.44 Aligned_cols=211 Identities=28% Similarity=0.298 Sum_probs=142.9
Q ss_pred CCCEEECCCCcCcccCC----ccccCCCCCcEEEccCCcCCCCcch----hccCC-CCCCEEeccCCccccc----cchh
Q 038320 219 SLSELHLPACGLFEFPP----LSVVNFSSLLFLDLSSNDFNSSIPQ----WLLNI-SKLAHLDLSANNLQGN----IPDA 285 (467)
Q Consensus 219 ~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l-~~L~~L~l~~n~l~~~----~~~~ 285 (467)
.+..+.+.+|.+..... ..+...+.|+.|++++|.+.+.-.. .+... ..++.|++..|.+++. +.+.
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 37788899998876544 3445678999999999998743222 22232 4577788888877653 4455
Q ss_pred hhCCCCCCEEeCCCCCCCCC---CCccccc----CCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCc
Q 038320 286 FANMTSLRELDLSENSLIGG---QIPKDLG----SLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGG 358 (467)
Q Consensus 286 l~~l~~L~~L~L~~n~l~~~---~~~~~l~----~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~ 358 (467)
+.....++.++++.|.+... .++..+. ...++++|++.+|.++......+..........+..|++..|++.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 66688899999999987311 1122333 4678999999999988655444433332222237779999998875
Q ss_pred C----CCccccCC-CCCCEEEccCCcCcccc----cccccCCCCCCEEECcCCcCccc----ChhhhcCCCCCCEEeCcC
Q 038320 359 F----LPNSLGQL-ENLKILQLWGNLFRGSI----PESIGNLSSLRELYLHNNLMDGT----IPKSLGKLSHLVVLDISG 425 (467)
Q Consensus 359 ~----~~~~l~~l-~~L~~L~l~~n~l~~~~----~~~l~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~l~~ 425 (467)
. ....+..+ +.+++++++.|.+++.. ...+..++.++.+.+++|.+.+. +-..+.....+..+.+.+
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~ 327 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGG 327 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccc
Confidence 4 33344555 67899999999998644 34456788999999999998764 233444556677777776
Q ss_pred CCCc
Q 038320 426 NPWI 429 (467)
Q Consensus 426 n~~~ 429 (467)
+...
T Consensus 328 ~~~~ 331 (478)
T KOG4308|consen 328 TGKG 331 (478)
T ss_pred cCcc
Confidence 5543
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.99 E-value=0.008 Score=31.86 Aligned_cols=19 Identities=53% Similarity=0.997 Sum_probs=9.6
Q ss_pred CCEEEcCCCcCCCCCCccCC
Q 038320 142 LRYLNLSGASFAGNIPPSFG 161 (467)
Q Consensus 142 L~~L~L~~n~l~~~~p~~l~ 161 (467)
|++|++++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4444443
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.90 E-value=0.011 Score=31.26 Aligned_cols=11 Identities=27% Similarity=0.205 Sum_probs=4.2
Q ss_pred CEEECcCCcCc
Q 038320 395 RELYLHNNLMD 405 (467)
Q Consensus 395 ~~L~Ls~n~l~ 405 (467)
++|++++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33333333333
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.59 E-value=0.074 Score=26.07 Aligned_cols=11 Identities=45% Similarity=0.640 Sum_probs=3.5
Q ss_pred CCEEEcCCCcC
Q 038320 142 LRYLNLSGASF 152 (467)
Q Consensus 142 L~~L~L~~n~l 152 (467)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.61 E-value=0.056 Score=46.51 Aligned_cols=33 Identities=33% Similarity=0.370 Sum_probs=14.4
Q ss_pred CccEEECcCC-CCCcCCCccccCCCCCCEEEccC
Q 038320 345 SLESLDLGQN-NLGGFLPNSLGQLENLKILQLWG 377 (467)
Q Consensus 345 ~L~~L~L~~n-~i~~~~~~~l~~l~~L~~L~l~~ 377 (467)
+|+.|++++| +||+.--.++..+++|+.|.+.+
T Consensus 152 ~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 152 SLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred chheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 4444444444 24433333444444444444443
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.96 E-value=0.04 Score=47.37 Aligned_cols=83 Identities=23% Similarity=0.193 Sum_probs=60.1
Q ss_pred CccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccc-ccccc-CCCCCCEEECcCC-cCcccChhhhcCCCCCCEE
Q 038320 345 SLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSI-PESIG-NLSSLRELYLHNN-LMDGTIPKSLGKLSHLVVL 421 (467)
Q Consensus 345 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~-~~~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L 421 (467)
.++.++-+++.|..+--..+..++.++.|.+.+|.--+.. -+.++ -.++|+.|++++| +||+.--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 5788888888887766677778888888888888643211 11111 3578899999987 6777777788888888888
Q ss_pred eCcCCC
Q 038320 422 DISGNP 427 (467)
Q Consensus 422 ~l~~n~ 427 (467)
.+.+=+
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 887644
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.95 E-value=0.068 Score=28.87 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=7.9
Q ss_pred CCCCEEECcCCcCcccCh
Q 038320 392 SSLRELYLHNNLMDGTIP 409 (467)
Q Consensus 392 ~~L~~L~Ls~n~l~~~~p 409 (467)
++|++|+|++|++++..+
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 445555555555544433
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.00 E-value=0.14 Score=27.54 Aligned_cols=21 Identities=38% Similarity=0.340 Sum_probs=10.6
Q ss_pred CCCCEEeccCCcCCCchhhHH
Q 038320 315 CNLWDLDLSGNDLDGEIIEFV 335 (467)
Q Consensus 315 ~~L~~L~l~~n~l~~~~~~~l 335 (467)
++|++|++++|.+++..+..+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 456666666666655544443
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.54 E-value=0.32 Score=26.73 Aligned_cols=18 Identities=39% Similarity=0.403 Sum_probs=8.8
Q ss_pred CcCCeeeccCccCCCCCC
Q 038320 164 SSLQILDLNTFYYSSLES 181 (467)
Q Consensus 164 ~~L~~L~l~~n~~~~l~~ 181 (467)
++|++|++++|.++.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 344555555555544443
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.54 E-value=0.32 Score=26.73 Aligned_cols=18 Identities=39% Similarity=0.403 Sum_probs=8.8
Q ss_pred CcCCeeeccCccCCCCCC
Q 038320 164 SSLQILDLNTFYYSSLES 181 (467)
Q Consensus 164 ~~L~~L~l~~n~~~~l~~ 181 (467)
++|++|++++|.++.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 344555555555544443
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.50 E-value=0.0095 Score=52.17 Aligned_cols=88 Identities=15% Similarity=0.109 Sum_probs=54.4
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCC
Q 038320 110 SVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSR 189 (467)
Q Consensus 110 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~ 189 (467)
.+..+...+.||++.|++- .+-.-+..++.|..|+++.|.+. ..|..++....+++++..+|..+..|.. ++.
T Consensus 37 ei~~~kr~tvld~~s~r~v--n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s----~~k 109 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV--NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKS----QKK 109 (326)
T ss_pred hhhccceeeeehhhhhHHH--hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCcc----ccc
Confidence 4555666666666666554 23444555666666777766665 5666666666666677666666666655 566
Q ss_pred CCCCCEEECCCcCCC
Q 038320 190 LSSLQYLNLEGVDLS 204 (467)
Q Consensus 190 l~~L~~L~L~~n~~~ 204 (467)
.+.++.+++.++.+.
T Consensus 110 ~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEFF 124 (326)
T ss_pred cCCcchhhhccCcch
Confidence 666666666665543
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.22 E-value=0.014 Score=51.08 Aligned_cols=59 Identities=20% Similarity=0.148 Sum_probs=24.5
Q ss_pred CCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCC
Q 038320 368 ENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPW 428 (467)
Q Consensus 368 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~ 428 (467)
..+..|+++.|.+. ..|..+.....+..+++.+|..+ ..|.++...+.++.+++.+|.+
T Consensus 65 t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 65 TRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred HHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence 33444444444433 33333333333444444444443 3344444444444444444443
No 85
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=83.97 E-value=5.6 Score=39.10 Aligned_cols=16 Identities=19% Similarity=0.009 Sum_probs=7.4
Q ss_pred CCEEECCCcCCCCCCC
Q 038320 193 LQYLNLEGVDLSKAGS 208 (467)
Q Consensus 193 L~~L~L~~n~~~~~~~ 208 (467)
+.+++++.|...+.++
T Consensus 216 lteldls~n~~Kddip 231 (553)
T KOG4242|consen 216 LTELDLSTNGGKDDIP 231 (553)
T ss_pred ccccccccCCCCccch
Confidence 4444555544444433
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.04 E-value=1.5 Score=24.18 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=13.5
Q ss_pred CCCCEEeccCCCCCCCccEE
Q 038320 441 KNLKELHIAKYSLAPRLTLV 460 (467)
Q Consensus 441 ~~L~~l~l~~n~i~~~~~~~ 460 (467)
++|+.|++++|++++.+.+.
T Consensus 2 ~~L~~L~vs~N~Lt~LPeL~ 21 (26)
T smart00364 2 PSLKELNVSNNQLTSLPELX 21 (26)
T ss_pred cccceeecCCCccccCcccc
Confidence 45677777777777666554
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=78.22 E-value=2.3 Score=23.83 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=14.0
Q ss_pred CCCCEEeccCCcCCCchhhHHHh
Q 038320 315 CNLWDLDLSGNDLDGEIIEFVDR 337 (467)
Q Consensus 315 ~~L~~L~l~~n~l~~~~~~~l~~ 337 (467)
++|++|+|++|.+..+....+.+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 35677777777776555544443
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=69.09 E-value=4.3 Score=22.39 Aligned_cols=14 Identities=29% Similarity=0.563 Sum_probs=7.4
Q ss_pred CCCCEEeccCCCCC
Q 038320 441 KNLKELHIAKYSLA 454 (467)
Q Consensus 441 ~~L~~l~l~~n~i~ 454 (467)
++|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555554
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=62.82 E-value=4.9 Score=40.30 Aligned_cols=89 Identities=19% Similarity=0.168 Sum_probs=56.1
Q ss_pred CCCCCCEEEccCCcCccc--ccccccCCCCCCEEECcCC--cCccc-ChhhhcCCCCCCEEeCcCCCCcccCChh-----
Q 038320 366 QLENLKILQLWGNLFRGS--IPESIGNLSSLRELYLHNN--LMDGT-IPKSLGKLSHLVVLDISGNPWIGLVTEV----- 435 (467)
Q Consensus 366 ~l~~L~~L~l~~n~l~~~--~~~~l~~~~~L~~L~Ls~n--~l~~~-~p~~l~~l~~L~~L~l~~n~~~~~~~~~----- 435 (467)
+.+.+..+++++|++... +...-...|+|+.|+|++| .+... -...+ +...|++|.+.||++.+.....
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~-k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL-KGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh-cCCCHHHeeecCCccccchhhhHHHHH
Confidence 567888899999987631 1122235799999999999 44322 11222 3456999999999998654321
Q ss_pred -hhCCCCCCCEEeccCCCCCCCc
Q 038320 436 -HFSKLKNLKELHIAKYSLAPRL 457 (467)
Q Consensus 436 -~~~~l~~L~~l~l~~n~i~~~~ 457 (467)
.-..+|+|..| .|..+.+++
T Consensus 295 ~i~~~FPKL~~L--DG~ev~~~~ 315 (585)
T KOG3763|consen 295 AIRELFPKLLRL--DGVEVQPEV 315 (585)
T ss_pred HHHHhcchheee--cCcccCccc
Confidence 12245666554 466666544
No 90
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=62.54 E-value=5.8 Score=30.03 Aligned_cols=21 Identities=24% Similarity=0.293 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhhccccccc
Q 038320 10 VFLVLLSGFLFFNSVRLSTCQ 30 (467)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~ 30 (467)
+++.++++++|+.++.++++.
T Consensus 7 llL~l~LA~lLlisSevaa~~ 27 (95)
T PF07172_consen 7 LLLGLLLAALLLISSEVAARE 27 (95)
T ss_pred HHHHHHHHHHHHHHhhhhhHH
Confidence 334444444444444444443
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=61.85 E-value=3.5 Score=41.29 Aligned_cols=15 Identities=40% Similarity=0.474 Sum_probs=7.9
Q ss_pred CCCEEECCCcCCCCC
Q 038320 192 SLQYLNLEGVDLSKA 206 (467)
Q Consensus 192 ~L~~L~L~~n~~~~~ 206 (467)
.|++|-+.+|.+...
T Consensus 271 ~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 271 PLEELVLEGNPLCTT 285 (585)
T ss_pred CHHHeeecCCccccc
Confidence 455555555555443
No 92
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=52.16 E-value=13 Score=20.23 Aligned_cols=12 Identities=42% Similarity=0.565 Sum_probs=6.9
Q ss_pred CCCCEEeCcCCC
Q 038320 416 SHLVVLDISGNP 427 (467)
Q Consensus 416 ~~L~~L~l~~n~ 427 (467)
++|+.|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 455666666654
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=31.58 E-value=1.2e+02 Score=30.41 Aligned_cols=66 Identities=27% Similarity=0.300 Sum_probs=33.3
Q ss_pred CCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhh---CCCCCCEEeCCCCCCCCCCCccc
Q 038320 242 SSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFA---NMTSLRELDLSENSLIGGQIPKD 310 (467)
Q Consensus 242 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~~ 310 (467)
+.+++++++.|.+....|-.+..-.. -+.++.|..+...-..+. .-..+.+++++.|.. .+.+|..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~-Kddip~~ 233 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGG-KDDIPRT 233 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCC-CccchhH
Confidence 55677888888877666554432111 144555554432211110 112356666666665 4455543
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.25 E-value=55 Score=40.05 Aligned_cols=33 Identities=21% Similarity=0.186 Sum_probs=27.2
Q ss_pred EccCCcCcccccccccCCCCCCEEECcCCcCcc
Q 038320 374 QLWGNLFRGSIPESIGNLSSLRELYLHNNLMDG 406 (467)
Q Consensus 374 ~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~ 406 (467)
||++|+|+...+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 578999986666678889999999999998753
No 95
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=20.49 E-value=50 Score=23.45 Aligned_cols=11 Identities=18% Similarity=0.573 Sum_probs=7.0
Q ss_pred CCCCCCCCCCc
Q 038320 58 SSWTGEDCCKW 68 (467)
Q Consensus 58 ~~w~~~~~c~w 68 (467)
+.+.+.+||.|
T Consensus 57 C~~~~~~CC~~ 67 (75)
T PF02950_consen 57 CCKRNSECCSG 67 (75)
T ss_dssp -BTTTTCBSSS
T ss_pred CCCCCCCCCCC
Confidence 34556778887
Done!