Query 038320
Match_columns 467
No_of_seqs 419 out of 4614
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 16:46:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038320.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038320hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.3E-53 1.1E-57 450.6 30.2 415 31-466 5-557 (768)
2 4eco_A Uncharacterized protein 100.0 7.9E-49 2.7E-53 408.0 27.1 402 34-454 26-579 (636)
3 4ecn_A Leucine-rich repeat pro 100.0 6.8E-47 2.3E-51 400.5 28.9 390 32-454 263-819 (876)
4 3rgz_A Protein brassinosteroid 100.0 1.2E-45 4.1E-50 392.6 28.8 371 79-466 248-723 (768)
5 3v47_A TOLL-like receptor 5B a 100.0 2.7E-41 9.4E-46 338.5 29.8 368 64-454 6-408 (455)
6 3t6q_A CD180 antigen; protein- 100.0 3.4E-40 1.2E-44 342.4 32.0 354 78-454 33-462 (606)
7 1ogq_A PGIP-2, polygalacturona 100.0 6.3E-42 2.2E-46 325.4 17.1 292 34-403 2-302 (313)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.9E-40 6.6E-45 344.3 29.4 186 264-457 348-537 (606)
9 3t6q_A CD180 antigen; protein- 100.0 2.2E-39 7.6E-44 336.3 32.9 228 220-455 256-514 (606)
10 2z63_A TOLL-like receptor 4, v 100.0 2.4E-39 8.1E-44 333.7 28.6 349 78-454 28-531 (570)
11 4eco_A Uncharacterized protein 100.0 1.9E-40 6.6E-45 344.9 20.3 342 93-454 208-600 (636)
12 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-39 5E-44 333.7 25.6 359 65-454 3-510 (549)
13 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.4E-38 4.9E-43 327.0 28.3 342 78-454 52-510 (562)
14 3vq2_A TLR4, TOLL-like recepto 100.0 5.7E-39 1.9E-43 333.3 25.5 364 78-455 32-559 (606)
15 2z7x_B TOLL-like receptor 1, v 100.0 1.4E-38 4.8E-43 324.2 27.1 341 78-455 21-482 (520)
16 1ziw_A TOLL-like receptor 3; i 100.0 9.1E-38 3.1E-42 328.5 33.9 354 78-452 25-441 (680)
17 1ziw_A TOLL-like receptor 3; i 100.0 3.5E-37 1.2E-41 324.1 34.2 371 78-455 49-518 (680)
18 4ecn_A Leucine-rich repeat pro 100.0 1.8E-38 6.2E-43 336.2 23.6 330 106-454 480-840 (876)
19 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-37 4.1E-42 334.4 29.0 315 66-405 14-375 (844)
20 3v47_A TOLL-like receptor 5B a 100.0 1.4E-36 4.9E-41 304.2 29.6 333 115-457 30-387 (455)
21 2id5_A Lingo-1, leucine rich r 100.0 7.3E-37 2.5E-41 308.1 27.6 313 106-433 25-337 (477)
22 2id5_A Lingo-1, leucine rich r 100.0 2.6E-36 9E-41 304.1 29.7 319 100-433 41-360 (477)
23 3j0a_A TOLL-like receptor 5; m 100.0 4.2E-37 1.4E-41 330.1 24.1 355 78-455 48-518 (844)
24 4g8a_A TOLL-like receptor 4; l 100.0 2.8E-36 9.5E-41 314.5 28.6 351 79-454 53-580 (635)
25 4fmz_A Internalin; leucine ric 100.0 2.7E-35 9.4E-40 284.2 32.2 307 111-454 40-346 (347)
26 3o6n_A APL1; leucine-rich repe 100.0 7E-36 2.4E-40 293.0 27.7 309 113-454 43-352 (390)
27 1o6v_A Internalin A; bacterial 100.0 4.9E-35 1.7E-39 293.7 32.8 312 101-455 78-389 (466)
28 2z63_A TOLL-like receptor 4, v 100.0 4.5E-36 1.5E-40 309.2 25.9 335 115-457 28-510 (570)
29 1o6v_A Internalin A; bacterial 100.0 9.7E-35 3.3E-39 291.5 31.9 325 78-458 46-370 (466)
30 3bz5_A Internalin-J, INLJ; leu 100.0 1.4E-34 4.9E-39 288.5 31.6 333 78-467 42-394 (457)
31 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1E-35 3.4E-40 305.8 23.4 324 78-434 76-515 (562)
32 3oja_B Anopheles plasmodium-re 100.0 3E-35 1E-39 304.1 26.6 309 113-453 49-357 (597)
33 2z7x_B TOLL-like receptor 1, v 100.0 6.2E-36 2.1E-40 304.7 20.8 322 78-434 45-486 (520)
34 2z81_A CD282 antigen, TOLL-lik 100.0 4.3E-35 1.5E-39 300.5 22.7 341 101-454 15-423 (549)
35 4fmz_A Internalin; leucine ric 100.0 1.5E-33 5.3E-38 271.9 31.0 303 78-429 44-346 (347)
36 3o6n_A APL1; leucine-rich repe 100.0 1.2E-33 3.9E-38 277.3 26.4 319 94-443 48-366 (390)
37 3bz5_A Internalin-J, INLJ; leu 100.0 6.4E-33 2.2E-37 276.5 29.2 306 107-456 34-354 (457)
38 3oja_B Anopheles plasmodium-re 100.0 5E-33 1.7E-37 287.4 27.3 316 95-441 55-370 (597)
39 4g8a_A TOLL-like receptor 4; l 100.0 3.3E-32 1.1E-36 283.7 30.3 329 115-456 52-557 (635)
40 1xku_A Decorin; proteoglycan, 100.0 1.4E-31 4.7E-36 256.4 30.3 290 116-452 32-330 (330)
41 4fcg_A Uncharacterized protein 100.0 7.6E-34 2.6E-38 271.3 13.3 274 30-326 19-312 (328)
42 2ft3_A Biglycan; proteoglycan, 100.0 4.7E-32 1.6E-36 259.8 24.8 287 116-451 34-330 (332)
43 1jl5_A Outer protein YOPM; leu 100.0 7.1E-31 2.4E-35 261.5 32.6 298 96-454 96-409 (454)
44 1ogq_A PGIP-2, polygalacturona 100.0 5.2E-33 1.8E-37 263.9 14.5 249 191-452 50-302 (313)
45 1xku_A Decorin; proteoglycan, 100.0 6.3E-31 2.2E-35 251.8 29.2 269 115-427 52-330 (330)
46 2ft3_A Biglycan; proteoglycan, 100.0 2.4E-31 8.2E-36 254.9 25.7 275 106-427 47-331 (332)
47 1jl5_A Outer protein YOPM; leu 100.0 8.2E-32 2.8E-36 268.3 21.0 306 94-455 37-371 (454)
48 1z7x_W Ribonuclease inhibitor; 100.0 5.8E-35 2E-39 293.0 -2.2 359 95-454 32-440 (461)
49 1z7x_W Ribonuclease inhibitor; 100.0 1.9E-34 6.3E-39 289.3 -0.1 357 79-455 4-412 (461)
50 2z80_A TOLL-like receptor 2, v 100.0 6.5E-30 2.2E-34 247.1 18.5 262 115-409 52-318 (353)
51 2z80_A TOLL-like receptor 2, v 100.0 2.8E-29 9.6E-34 242.6 19.3 282 111-433 27-318 (353)
52 4fcg_A Uncharacterized protein 100.0 8.8E-29 3E-33 236.2 19.6 227 218-456 81-316 (328)
53 2z66_A Variable lymphocyte rec 100.0 7.9E-29 2.7E-33 234.6 17.1 282 118-439 10-296 (306)
54 2z66_A Variable lymphocyte rec 100.0 2.8E-28 9.5E-33 230.9 18.7 250 167-432 10-264 (306)
55 3g06_A SSPH2 (leucine-rich rep 100.0 6.5E-28 2.2E-32 247.5 21.0 287 57-413 12-305 (622)
56 1ozn_A Reticulon 4 receptor; N 100.0 7.7E-28 2.6E-32 225.4 18.7 249 192-451 33-284 (285)
57 1ozn_A Reticulon 4 receptor; N 100.0 1.8E-27 6.1E-32 222.9 19.7 244 194-451 14-258 (285)
58 3zyi_A Leucine-rich repeat-con 100.0 7E-27 2.4E-31 233.4 24.9 247 142-405 56-303 (452)
59 3zyj_A Leucine-rich repeat-con 100.0 7.1E-27 2.4E-31 232.6 24.8 247 142-405 45-292 (440)
60 3zyi_A Leucine-rich repeat-con 100.0 5.3E-27 1.8E-31 234.3 23.9 249 165-429 55-303 (452)
61 3zyj_A Leucine-rich repeat-con 100.0 1E-26 3.5E-31 231.4 23.7 250 165-430 44-293 (440)
62 3g06_A SSPH2 (leucine-rich rep 99.9 1.2E-25 4.1E-30 230.8 30.7 267 114-438 39-305 (622)
63 1wwl_A Monocyte differentiatio 99.9 1.7E-28 6E-33 232.8 6.6 205 240-455 93-310 (312)
64 3ogk_B Coronatine-insensitive 99.9 4.4E-29 1.5E-33 258.1 1.7 334 113-456 162-528 (592)
65 1wwl_A Monocyte differentiatio 99.9 1.6E-28 5.5E-33 233.0 4.2 203 217-431 94-311 (312)
66 3o53_A Protein LRIM1, AGAP0063 99.9 6.6E-28 2.3E-32 229.3 6.8 249 101-400 20-270 (317)
67 2o6q_A Variable lymphocyte rec 99.9 2.9E-25 1E-29 206.0 22.9 218 63-329 2-219 (270)
68 3o53_A Protein LRIM1, AGAP0063 99.9 9E-28 3.1E-32 228.4 5.4 257 142-424 12-270 (317)
69 3oja_A Leucine-rich immune mol 99.9 1.4E-26 4.7E-31 232.8 11.6 239 111-400 30-270 (487)
70 3ogk_B Coronatine-insensitive 99.9 1.3E-28 4.4E-33 254.6 -4.0 307 138-454 162-501 (592)
71 2p1m_B Transport inhibitor res 99.9 4E-28 1.4E-32 251.1 -3.4 352 79-454 106-519 (594)
72 3oja_A Leucine-rich immune mol 99.9 3.9E-25 1.3E-29 222.2 17.5 238 188-449 31-270 (487)
73 2z62_A TOLL-like receptor 4, v 99.9 6.6E-24 2.2E-28 197.6 22.6 189 213-407 47-239 (276)
74 2z62_A TOLL-like receptor 4, v 99.9 6.2E-24 2.1E-28 197.8 20.5 209 218-433 28-241 (276)
75 2o6q_A Variable lymphocyte rec 99.9 2.3E-23 8E-28 193.2 22.1 205 218-431 16-220 (270)
76 3rfs_A Internalin B, repeat mo 99.9 1.3E-24 4.5E-29 201.8 12.2 136 239-380 82-217 (272)
77 3rfs_A Internalin B, repeat mo 99.9 1.2E-23 4.1E-28 195.3 16.9 210 215-442 38-247 (272)
78 2ca6_A RAN GTPase-activating p 99.9 2.5E-25 8.6E-30 217.6 5.0 238 214-451 56-340 (386)
79 2ca6_A RAN GTPase-activating p 99.9 5.2E-25 1.8E-29 215.3 6.8 240 212-457 26-319 (386)
80 4glp_A Monocyte differentiatio 99.9 6.8E-24 2.3E-28 200.9 14.3 202 217-429 90-307 (310)
81 3goz_A Leucine-rich repeat-con 99.9 7E-25 2.4E-29 212.4 6.9 234 145-379 3-264 (362)
82 1p9a_G Platelet glycoprotein I 99.9 9E-23 3.1E-27 191.0 20.3 204 187-406 6-209 (290)
83 3goz_A Leucine-rich repeat-con 99.9 1E-24 3.4E-29 211.3 7.2 263 168-434 2-302 (362)
84 1p9a_G Platelet glycoprotein I 99.9 1.9E-22 6.5E-27 188.8 21.5 205 110-329 5-209 (290)
85 2p1m_B Transport inhibitor res 99.9 5.9E-26 2E-30 234.8 -3.2 336 111-454 101-494 (594)
86 2ast_B S-phase kinase-associat 99.9 5.1E-24 1.8E-28 204.2 9.8 234 191-438 70-314 (336)
87 4glp_A Monocyte differentiatio 99.9 3.7E-23 1.2E-27 195.9 14.3 231 217-455 63-308 (310)
88 2ast_B S-phase kinase-associat 99.9 3.8E-24 1.3E-28 205.1 7.1 248 192-456 48-308 (336)
89 3m19_A Variable lymphocyte rec 99.9 3.8E-22 1.3E-26 183.0 20.0 189 64-302 3-191 (251)
90 1h6u_A Internalin H; cell adhe 99.9 8.7E-22 3E-26 186.1 17.9 195 111-329 37-231 (308)
91 3m19_A Variable lymphocyte rec 99.9 3E-21 1E-25 176.9 19.4 180 219-407 15-194 (251)
92 1h6u_A Internalin H; cell adhe 99.9 2.8E-21 9.4E-26 182.6 19.6 193 188-405 38-230 (308)
93 2xwt_C Thyrotropin receptor; s 99.9 1.7E-21 5.8E-26 177.2 14.7 196 116-325 32-236 (239)
94 2xwt_C Thyrotropin receptor; s 99.9 1.2E-21 4.2E-26 178.2 13.3 199 219-451 32-236 (239)
95 2o6s_A Variable lymphocyte rec 99.8 4E-20 1.4E-24 164.4 16.7 164 114-291 27-190 (208)
96 3cvr_A Invasion plasmid antige 99.8 4E-20 1.4E-24 187.5 17.0 200 67-339 49-254 (571)
97 4ay9_X Follicle-stimulating ho 99.8 9.1E-20 3.1E-24 175.5 15.7 239 168-426 13-256 (350)
98 2o6s_A Variable lymphocyte rec 99.8 1.7E-19 5.9E-24 160.3 15.9 65 345-416 125-189 (208)
99 4ay9_X Follicle-stimulating ho 99.8 2.8E-19 9.6E-24 172.1 16.2 245 111-377 6-255 (350)
100 3cvr_A Invasion plasmid antige 99.8 5.8E-19 2E-23 179.0 18.7 186 192-414 60-252 (571)
101 3e6j_A Variable lymphocyte rec 99.8 2E-18 6.8E-23 155.7 18.1 162 58-255 11-172 (229)
102 1m9s_A Internalin B; cell inva 99.8 5.8E-19 2E-23 180.9 16.3 171 111-302 39-209 (605)
103 1h6t_A Internalin B; cell adhe 99.8 2E-18 6.8E-23 161.6 16.5 173 214-406 42-214 (291)
104 1h6t_A Internalin B; cell adhe 99.8 9.9E-19 3.4E-23 163.6 14.4 172 112-329 43-214 (291)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 1.6E-18 5.5E-23 155.2 14.2 156 269-433 14-170 (220)
106 1m9s_A Internalin B; cell inva 99.8 1.1E-18 3.7E-23 178.9 13.6 191 140-358 21-211 (605)
107 2v9t_B SLIT homolog 2 protein 99.8 3.8E-18 1.3E-22 152.8 14.0 153 269-430 14-166 (220)
108 2v70_A SLIT-2, SLIT homolog 2 99.8 6E-18 2.1E-22 151.5 14.4 156 245-409 14-170 (220)
109 3e6j_A Variable lymphocyte rec 99.8 1.6E-17 5.3E-22 149.8 16.6 156 268-433 21-176 (229)
110 2v9t_B SLIT homolog 2 protein 99.8 8.5E-18 2.9E-22 150.5 14.4 153 245-406 14-166 (220)
111 4ezg_A Putative uncharacterize 99.8 3.7E-18 1.3E-22 150.2 11.5 153 288-454 42-194 (197)
112 2xot_A Amphoterin-induced prot 99.8 5.9E-18 2E-22 163.5 13.6 176 221-405 21-202 (361)
113 2xot_A Amphoterin-induced prot 99.7 6E-18 2.1E-22 163.4 13.1 177 245-430 21-203 (361)
114 4ezg_A Putative uncharacterize 99.7 1.2E-17 4.2E-22 146.9 12.6 154 137-328 41-194 (197)
115 4b8c_D Glucose-repressible alc 99.7 2.4E-18 8.2E-23 180.7 6.6 113 242-362 247-359 (727)
116 1xeu_A Internalin C; cellular 99.7 2.4E-17 8.4E-22 151.7 11.5 171 240-431 17-187 (263)
117 1xeu_A Internalin C; cellular 99.7 5.7E-17 1.9E-21 149.3 12.7 148 111-302 37-184 (263)
118 1dce_A Protein (RAB geranylger 99.7 8.5E-20 2.9E-24 186.0 -7.4 123 316-448 442-567 (567)
119 1dce_A Protein (RAB geranylger 99.7 5.6E-19 1.9E-23 180.0 -4.4 184 264-458 347-550 (567)
120 2ell_A Acidic leucine-rich nuc 99.7 1.8E-16 6.1E-21 135.6 11.0 135 315-456 24-162 (168)
121 3sb4_A Hypothetical leucine ri 99.7 9.9E-17 3.4E-21 152.9 10.4 219 217-448 100-328 (329)
122 1w8a_A SLIT protein; signaling 99.7 2.1E-16 7.3E-21 138.2 9.5 133 293-434 11-144 (192)
123 1w8a_A SLIT protein; signaling 99.7 8.5E-16 2.9E-20 134.4 13.2 171 269-454 11-183 (192)
124 4b8c_D Glucose-repressible alc 99.7 2.2E-17 7.5E-22 173.4 3.4 180 257-453 215-403 (727)
125 2je0_A Acidic leucine-rich nuc 99.6 3.1E-16 1.1E-20 131.2 7.9 130 290-450 17-149 (149)
126 2ell_A Acidic leucine-rich nuc 99.6 1.4E-15 4.9E-20 129.9 11.7 132 266-429 24-160 (168)
127 2je0_A Acidic leucine-rich nuc 99.6 2.7E-15 9.2E-20 125.5 10.4 127 266-400 17-148 (149)
128 3sb4_A Hypothetical leucine ri 99.6 1.5E-15 5E-20 144.8 9.3 219 190-423 100-328 (329)
129 2wfh_A SLIT homolog 2 protein 99.6 6.7E-15 2.3E-19 128.7 11.3 128 293-430 13-140 (193)
130 2wfh_A SLIT homolog 2 protein 99.6 2.8E-14 9.4E-19 124.7 14.2 128 269-406 13-140 (193)
131 2o6r_A Variable lymphocyte rec 99.6 2E-14 6.9E-19 123.9 13.2 86 345-430 53-138 (177)
132 2o6r_A Variable lymphocyte rec 99.6 1.7E-14 5.8E-19 124.3 12.4 130 317-455 9-138 (177)
133 4fdw_A Leucine rich hypothetic 99.5 5.3E-13 1.8E-17 130.0 21.5 87 361-451 293-380 (401)
134 4fdw_A Leucine rich hypothetic 99.5 7.7E-13 2.6E-17 128.9 21.7 269 139-427 112-381 (401)
135 1a9n_A U2A', U2A'; complex (nu 99.5 2E-14 6.8E-19 123.8 9.0 132 286-428 15-152 (176)
136 4fs7_A Uncharacterized protein 99.5 9.5E-13 3.2E-17 128.5 20.0 156 106-275 62-217 (394)
137 1a9n_A U2A', U2A'; complex (nu 99.5 4.1E-14 1.4E-18 121.8 8.6 130 264-404 17-152 (176)
138 1ds9_A Outer arm dynein; leuci 99.5 3.4E-16 1.2E-20 137.7 -5.1 127 285-422 43-180 (198)
139 3un9_A NLR family member X1; l 99.5 3.8E-15 1.3E-19 143.8 0.1 186 266-453 72-282 (372)
140 1ds9_A Outer arm dynein; leuci 99.5 7.8E-16 2.7E-20 135.4 -5.2 134 260-406 42-186 (198)
141 3g39_A Variable lymphocyte rec 99.4 6.1E-13 2.1E-17 113.7 12.3 108 317-432 11-118 (170)
142 4fs7_A Uncharacterized protein 99.4 1E-11 3.5E-16 121.2 21.6 312 103-446 82-393 (394)
143 2r9u_A Variable lymphocyte rec 99.4 1.3E-12 4.3E-17 112.1 12.8 106 318-431 15-120 (174)
144 3un9_A NLR family member X1; l 99.4 4.4E-14 1.5E-18 136.3 2.5 161 289-455 71-253 (372)
145 3g39_A Variable lymphocyte rec 99.4 1.7E-12 5.7E-17 110.9 10.6 107 292-407 11-117 (170)
146 2r9u_A Variable lymphocyte rec 99.3 6.6E-12 2.3E-16 107.5 11.0 105 293-406 15-119 (174)
147 2ifg_A High affinity nerve gro 99.2 3.8E-11 1.3E-15 115.0 11.5 98 102-206 20-118 (347)
148 2ifg_A High affinity nerve gro 99.2 5.1E-11 1.7E-15 114.1 12.1 102 349-454 13-116 (347)
149 4gt6_A Cell surface protein; l 99.2 2.4E-09 8E-14 104.4 22.9 317 109-453 57-390 (394)
150 4gt6_A Cell surface protein; l 99.2 8.7E-09 3E-13 100.3 25.0 295 133-452 56-368 (394)
151 2ra8_A Uncharacterized protein 99.1 4.6E-11 1.6E-15 114.3 4.9 84 366-452 250-341 (362)
152 2ra8_A Uncharacterized protein 99.1 2.5E-10 8.5E-15 109.2 8.1 205 217-427 106-341 (362)
153 4h09_A Hypothetical leucine ri 98.9 1.8E-07 6.2E-12 90.4 23.2 304 112-443 43-358 (379)
154 4h09_A Hypothetical leucine ri 98.9 1.9E-07 6.4E-12 90.3 21.3 292 134-451 40-343 (379)
155 1io0_A Tropomodulin; LRR prote 98.8 5.2E-09 1.8E-13 90.3 5.0 72 284-357 30-106 (185)
156 1io0_A Tropomodulin; LRR prote 98.7 1.7E-08 6E-13 87.0 5.0 119 310-429 31-164 (185)
157 3e4g_A ATP synthase subunit S, 98.4 1.6E-07 5.4E-12 79.1 3.9 85 345-429 62-152 (176)
158 3rw6_A Nuclear RNA export fact 98.4 3.5E-07 1.2E-11 82.9 6.1 80 367-447 169-257 (267)
159 3e4g_A ATP synthase subunit S, 98.4 1.5E-07 5.3E-12 79.2 3.5 82 369-451 62-149 (176)
160 3rw6_A Nuclear RNA export fact 98.3 1.6E-07 5.5E-12 85.1 2.3 79 343-423 169-258 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.9 9.8E-06 3.3E-10 69.5 5.8 40 388-427 122-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.8 1E-05 3.4E-10 69.4 3.4 108 345-453 42-169 (197)
163 3rfe_A Platelet glycoprotein I 96.4 0.0065 2.2E-07 48.3 6.7 57 347-405 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.0 0.016 5.4E-07 46.0 7.0 36 141-176 32-67 (130)
165 2lz0_A Uncharacterized protein 47.1 28 0.00096 25.5 4.7 45 356-401 8-52 (100)
166 2lz0_A Uncharacterized protein 44.7 21 0.00073 26.1 3.7 47 379-426 7-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.3e-53 Score=450.64 Aligned_cols=415 Identities=27% Similarity=0.354 Sum_probs=243.9
Q ss_pred ccccccHhhHHHHHHhHhcCCCCCCCCCCC-CCCCCCCcccEEecCCCCCEEEEEcCCCCCC------------------
Q 038320 31 SIARCVQNEKEALLKIKASVTDPSGRLSSW-TGEDCCKWEGVICDNSTGKVVQLKLRSPEIP------------------ 91 (467)
Q Consensus 31 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w-~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~------------------ 91 (467)
+++.+.++|++||++||+++.||. .+++| .+.+||.|+||+|+ .++|+.+++++..+.
T Consensus 5 ~~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~ 81 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLES 81 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCE
T ss_pred ccccCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccc
Confidence 334446789999999999999988 88999 57899999999998 689999999865432
Q ss_pred -------------------CCcCCCCcccccccccCc--cccCCCCCCEEeCCCCCCCCCCCCccc-CCCCCCCEEEcCC
Q 038320 92 -------------------DSFTDNGTTYQLEGEISP--SVLDLKHLNYLDLSLNNFRGSRIPNFL-GSLEKLRYLNLSG 149 (467)
Q Consensus 92 -------------------~~~~~~~~~~~l~~~~~~--~l~~l~~L~~L~L~~n~i~~~~~~~~~-~~l~~L~~L~L~~ 149 (467)
..+++++++|.++|.+|. .++++++|++|++++|.+.+. .|..+ .++++|++|++++
T Consensus 82 l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~Ls~ 160 (768)
T 3rgz_A 82 LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP-GKVSGGLKLNSLEVLDLSA 160 (768)
T ss_dssp EECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECC-SSCCSCCCCTTCSEEECCS
T ss_pred cCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCc-CCHHHhccCCCCCEEECCC
Confidence 125677788888888887 888888888888888877665 44332 4455555555555
Q ss_pred CcCCCCCCcc-------------------------CCCCCcCCeeeccCccCCCCCCC--------------------Ch
Q 038320 150 ASFAGNIPPS-------------------------FGNLSSLQILDLNTFYYSSLESD--------------------DV 184 (467)
Q Consensus 150 n~l~~~~p~~-------------------------l~~l~~L~~L~l~~n~~~~l~~~--------------------~~ 184 (467)
|.+++..|.. +.++++|++|++++|.+....+. ..
T Consensus 161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 240 (768)
T 3rgz_A 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS 240 (768)
T ss_dssp SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHH
T ss_pred CccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCccc
Confidence 4443322211 13445555555555554432222 11
Q ss_pred hhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCC-CCCcEEEccCCcCCCCcchhcc
Q 038320 185 EWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNF-SSLLFLDLSSNDFNSSIPQWLL 263 (467)
Q Consensus 185 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~ 263 (467)
..+.++++|++|++++|.+.+..+. ..+++|++|++++|.+.+.+|..+... ++|++|++++|.+++.+|..+.
T Consensus 241 ~~l~~l~~L~~L~Ls~n~l~~~~~~-----~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 315 (768)
T 3rgz_A 241 RAISTCTELKLLNISSNQFVGPIPP-----LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315 (768)
T ss_dssp HHTTTCSSCCEEECCSSCCEESCCC-----CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG
T ss_pred HHHhcCCCCCEEECCCCcccCccCc-----cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh
Confidence 1234444444444444444332211 023333333333333333334333332 5555555555555555555555
Q ss_pred CCCCCCEEeccCCccccccchh-hhCCCCCCEEeCCCCCCC---------------------------------------
Q 038320 264 NISKLAHLDLSANNLQGNIPDA-FANMTSLRELDLSENSLI--------------------------------------- 303 (467)
Q Consensus 264 ~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~--------------------------------------- 303 (467)
++++|+.|++++|.+.+.+|.. +.++++|++|++++|.+.
T Consensus 316 ~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 395 (768)
T 3rgz_A 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395 (768)
T ss_dssp GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCC
T ss_pred cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCC
Confidence 5555555555555544444433 444444444444444330
Q ss_pred -----------CCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCE
Q 038320 304 -----------GGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKI 372 (467)
Q Consensus 304 -----------~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~ 372 (467)
.+.+|..+..+++|+.|++++|.+++..|..+..++ +|++|++++|.+++.+|..+..+++|++
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-----~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-----KLRDLKLWLNMLEGEIPQELMYVKTLET 470 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT-----TCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCC-----CCCEEECCCCcccCcCCHHHcCCCCceE
Confidence 123333444444555555555555544444444443 6666666666666666666666666666
Q ss_pred EEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCC
Q 038320 373 LQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYS 452 (467)
Q Consensus 373 L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~ 452 (467)
|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|. .+..+++|+.|++++|
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N- 548 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA-ELGDCRSLIWLDLNTN- 548 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG-GGGGCTTCCEEECCSS-
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH-HHcCCCCCCEEECCCC-
Confidence 66666666666666666667777777777777666676666677777777777777666666 5666777777777777
Q ss_pred CCCCccEEEecCCC
Q 038320 453 LAPRLTLVFNVSPE 466 (467)
Q Consensus 453 i~~~~~~~g~~p~~ 466 (467)
.+.|.+|..
T Consensus 549 -----~l~g~ip~~ 557 (768)
T 3rgz_A 549 -----LFNGTIPAA 557 (768)
T ss_dssp -----EEESBCCGG
T ss_pred -----ccCCcCChH
Confidence 666666653
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.9e-49 Score=408.00 Aligned_cols=402 Identities=19% Similarity=0.200 Sum_probs=240.0
Q ss_pred cccHhhHHHHHHhHhcCCCCCCC--------CCCC-CCCCCCCc---ccEEecCCCCCEEEEEcCCCCCCC---------
Q 038320 34 RCVQNEKEALLKIKASVTDPSGR--------LSSW-TGEDCCKW---EGVICDNSTGKVVQLKLRSPEIPD--------- 92 (467)
Q Consensus 34 ~~~~~~~~~l~~~~~~~~~~~~~--------~~~w-~~~~~c~w---~gv~c~~~~~~v~~l~l~~~~~~~--------- 92 (467)
.....|+.||.+++.++.++.+. .++| .+.+||.| .||+|+.. |||+.+++++..+.+
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L 104 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQL 104 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGC
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcC
Confidence 34467999999999998766543 2379 47889999 99999754 899999999843211
Q ss_pred --CcCCCCccc---------------------------------------------------------------------
Q 038320 93 --SFTDNGTTY--------------------------------------------------------------------- 101 (467)
Q Consensus 93 --~~~~~~~~~--------------------------------------------------------------------- 101 (467)
.+.++++.|
T Consensus 105 ~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~ 184 (636)
T 4eco_A 105 TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK 184 (636)
T ss_dssp TTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCC
T ss_pred ccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchh
Confidence 122222222
Q ss_pred ---------ccccccCccccCCCCCCEEeCCCCCCCCC----------------CCCcccC--CCCCCCEEEcCCCcCCC
Q 038320 102 ---------QLEGEISPSVLDLKHLNYLDLSLNNFRGS----------------RIPNFLG--SLEKLRYLNLSGASFAG 154 (467)
Q Consensus 102 ---------~l~~~~~~~l~~l~~L~~L~L~~n~i~~~----------------~~~~~~~--~l~~L~~L~L~~n~l~~ 154 (467)
.++| +|..++++++|++|+|++|.+++. .+|..++ ++++|++|++++|.+.+
T Consensus 185 ~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~ 263 (636)
T 4eco_A 185 DTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT 263 (636)
T ss_dssp TTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS
T ss_pred hhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc
Confidence 3333 444555555555555555555430 0444444 55555555555555555
Q ss_pred CCCccCCCCCcCCeeeccCcc-CCC--CCCCChh--hcCCCCCCCEEECCCcCCCCCCCchhh--hcCCCCCCCEEECCC
Q 038320 155 NIPPSFGNLSSLQILDLNTFY-YSS--LESDDVE--WLSRLSSLQYLNLEGVDLSKAGSSWVQ--ATNMLPSLSELHLPA 227 (467)
Q Consensus 155 ~~p~~l~~l~~L~~L~l~~n~-~~~--l~~~~~~--~l~~l~~L~~L~L~~n~~~~~~~~~~~--~~~~l~~L~~L~l~~ 227 (467)
.+|..++++++|++|++++|. ++. +|..... .+..+++|++|++++|.++.. +. .+..+++|++|++++
T Consensus 264 ~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i----p~~~~l~~l~~L~~L~L~~ 339 (636)
T 4eco_A 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF----PVETSLQKMKKLGMLECLY 339 (636)
T ss_dssp SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC----CCHHHHTTCTTCCEEECCS
T ss_pred cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCcc----CchhhhccCCCCCEEeCcC
Confidence 555555555555555555554 332 2221000 011225555555555555522 22 455566666666666
Q ss_pred CcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCC-CCEEeccCCccccccchhhhCCC--CCCEEeCCCCCCCC
Q 038320 228 CGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISK-LAHLDLSANNLQGNIPDAFANMT--SLRELDLSENSLIG 304 (467)
Q Consensus 228 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~ 304 (467)
|.+.+.+| .+..+++|++|++++|.++ .+|..+.++++ |+.|++++|.++ .+|..+..++ +|++|++++|.+ .
T Consensus 340 N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l-~ 415 (636)
T 4eco_A 340 NQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEI-G 415 (636)
T ss_dssp CCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCT-T
T ss_pred CcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcC-C
Confidence 66665555 5566666666666666655 55555666666 666666666666 5555554433 566666666666 5
Q ss_pred CCCccccc-------CCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCcc-ccCC-------CC
Q 038320 305 GQIPKDLG-------SLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNS-LGQL-------EN 369 (467)
Q Consensus 305 ~~~~~~l~-------~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~-l~~l-------~~ 369 (467)
+..|..+. .+++|++|++++|.+++..+..+..++ +|++|++++|+++ .+|.. +... ++
T Consensus 416 ~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~-----~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~ 489 (636)
T 4eco_A 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS-----PLSSINLMGNMLT-EIPKNSLKDENENFKNTYL 489 (636)
T ss_dssp TTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTC-----CCSEEECCSSCCS-BCCSSSSEETTEECTTGGG
T ss_pred CcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCC-----CCCEEECCCCCCC-CcCHHHhccccccccccCC
Confidence 55555555 556677777777776643333333333 6777777777776 33332 2222 27
Q ss_pred CCEEEccCCcCccccccccc--CCCCCCEEECcCCcCcccChhhhcCCCCCCEEeC------cCCCCcccCChhhhCCCC
Q 038320 370 LKILQLWGNLFRGSIPESIG--NLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDI------SGNPWIGLVTEVHFSKLK 441 (467)
Q Consensus 370 L~~L~l~~n~l~~~~~~~l~--~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l------~~n~~~~~~~~~~~~~l~ 441 (467)
|++|++++|.++ .+|..+. .+++|++|++++|++++ +|..+..+++|++|++ ++|++.+.+|. .+..++
T Consensus 490 L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~-~l~~l~ 566 (636)
T 4eco_A 490 LTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE-GITLCP 566 (636)
T ss_dssp CCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT-TGGGCS
T ss_pred ccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChH-HHhcCC
Confidence 777777777777 5666665 77777777777777775 6777777777777777 45666777776 677777
Q ss_pred CCCEEeccCCCCC
Q 038320 442 NLKELHIAKYSLA 454 (467)
Q Consensus 442 ~L~~l~l~~n~i~ 454 (467)
+|+.|++++|+|.
T Consensus 567 ~L~~L~Ls~N~l~ 579 (636)
T 4eco_A 567 SLTQLQIGSNDIR 579 (636)
T ss_dssp SCCEEECCSSCCC
T ss_pred CCCEEECCCCcCC
Confidence 7777777777553
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.8e-47 Score=400.51 Aligned_cols=390 Identities=21% Similarity=0.232 Sum_probs=218.2
Q ss_pred cccccHhhHHHHHHhHhcCCCCCCCCCC-CCCCCC--CCc------------ccEEecCCCCCEEEEEcCCCCCCCCcCC
Q 038320 32 IARCVQNEKEALLKIKASVTDPSGRLSS-WTGEDC--CKW------------EGVICDNSTGKVVQLKLRSPEIPDSFTD 96 (467)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~-w~~~~~--c~w------------~gv~c~~~~~~v~~l~l~~~~~~~~~~~ 96 (467)
++.+..+|+.||++||+++.+|.+.... |...++ |.| .||+|+. .+||+.|+|++
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~--------- 332 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG--------- 332 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGGGCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT---------
T ss_pred ccccchHHHHHHHHHHHHcCCCCCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc---------
Confidence 3445678999999999999877322221 222355 999 9999986 68999999998
Q ss_pred CCcccccccccCccccCCCCCCEEeC-CCCCCCCC---------------------------------------------
Q 038320 97 NGTTYQLEGEISPSVLDLKHLNYLDL-SLNNFRGS--------------------------------------------- 130 (467)
Q Consensus 97 ~~~~~~l~~~~~~~l~~l~~L~~L~L-~~n~i~~~--------------------------------------------- 130 (467)
+.+.|.+|+.++++++|++|+| ++|.+.|.
T Consensus 333 ----~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l 408 (876)
T 4ecn_A 333 ----FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAI 408 (876)
T ss_dssp ----TCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHH
T ss_pred ----CCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHh
Confidence 5555555555555555555555 33322111
Q ss_pred ------------------------------CCCcccCCCCCCCEEEcCCCcCCC-----------------CCCccCC--
Q 038320 131 ------------------------------RIPNFLGSLEKLRYLNLSGASFAG-----------------NIPPSFG-- 161 (467)
Q Consensus 131 ------------------------------~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~p~~l~-- 161 (467)
.+|..++++++|++|+|++|.+++ .+|..++
T Consensus 409 ~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~ 488 (876)
T 4ecn_A 409 NRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWS 488 (876)
T ss_dssp HTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGG
T ss_pred hhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhc
Confidence 034445555555555555555554 2555554
Q ss_pred CCCcCCeeeccCccCCC-CCCCChhhcCCCCCCCEEECCCcC-CCC-CCCchhh----hcCCCCCCCEEECCCCcCcccC
Q 038320 162 NLSSLQILDLNTFYYSS-LESDDVEWLSRLSSLQYLNLEGVD-LSK-AGSSWVQ----ATNMLPSLSELHLPACGLFEFP 234 (467)
Q Consensus 162 ~l~~L~~L~l~~n~~~~-l~~~~~~~l~~l~~L~~L~L~~n~-~~~-~~~~~~~----~~~~l~~L~~L~l~~n~~~~~~ 234 (467)
++++|++|++++|.+.. +|.. +.++++|++|++++|. +++ ..+.... .+..+++|+.|++++|.+. .+
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~----l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~i 563 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDF----LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EF 563 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGG----GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BC
T ss_pred cCCCCCEEECcCCCCCccChHH----HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-cc
Confidence 55555555555554332 2211 4455555555555554 443 2111000 1223334555555555544 33
Q ss_pred Cc--cccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCC-CCEEeCCCCCCCCCCCcccc
Q 038320 235 PL--SVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTS-LRELDLSENSLIGGQIPKDL 311 (467)
Q Consensus 235 ~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~l 311 (467)
|. .+.++++|++|++++|.++ .+| .+.++++|+.|++++|.+. .+|..+..+++ |+.|++++|.+ . .+|..+
T Consensus 564 p~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L-~-~lp~~~ 638 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL-K-YIPNIF 638 (876)
T ss_dssp CCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCC-C-SCCSCC
T ss_pred CChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCC-C-cCchhh
Confidence 33 4444455555555555444 444 4444444444444444444 44444444444 44444444444 2 333333
Q ss_pred cCC-------------------------------CCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCC
Q 038320 312 GSL-------------------------------CNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFL 360 (467)
Q Consensus 312 ~~l-------------------------------~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~ 360 (467)
... ++|+.|++++|.++......+..+ ++|+.|++++|+++ .+
T Consensus 639 ~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l-----~~L~~L~Ls~N~L~-~i 712 (876)
T 4ecn_A 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG-----SPISTIILSNNLMT-SI 712 (876)
T ss_dssp CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTT-----CCCSEEECCSCCCS-CC
T ss_pred hccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccC-----CCCCEEECCCCcCC-cc
Confidence 222 245555555555553222222222 36777777777776 33
Q ss_pred CccccC--------CCCCCEEEccCCcCccccccccc--CCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcC-----
Q 038320 361 PNSLGQ--------LENLKILQLWGNLFRGSIPESIG--NLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISG----- 425 (467)
Q Consensus 361 ~~~l~~--------l~~L~~L~l~~n~l~~~~~~~l~--~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~----- 425 (467)
|..+.. +++|++|++++|.++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|++++
T Consensus 713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls 790 (876)
T 4ecn_A 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAE 790 (876)
T ss_dssp CTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTT
T ss_pred ChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcc
Confidence 433322 226777777777777 6666665 67777777777777775 677777777777777755
Q ss_pred -CCCcccCChhhhCCCCCCCEEeccCCCCC
Q 038320 426 -NPWIGLVTEVHFSKLKNLKELHIAKYSLA 454 (467)
Q Consensus 426 -n~~~~~~~~~~~~~l~~L~~l~l~~n~i~ 454 (467)
|++.+.+|. .+..+++|+.|+|++|+|.
T Consensus 791 ~N~l~~~ip~-~l~~L~~L~~L~Ls~N~L~ 819 (876)
T 4ecn_A 791 GNRILRQWPT-GITTCPSLIQLQIGSNDIR 819 (876)
T ss_dssp CCBCCCCCCT-TGGGCSSCCEEECCSSCCC
T ss_pred cccccccChH-HHhcCCCCCEEECCCCCCC
Confidence 666777776 6777777777777777553
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-45 Score=392.60 Aligned_cols=371 Identities=31% Similarity=0.396 Sum_probs=294.9
Q ss_pred CEEEEEcCCCCC---------CCCcCCCCcccccccccCccccCC-CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcC
Q 038320 79 KVVQLKLRSPEI---------PDSFTDNGTTYQLEGEISPSVLDL-KHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLS 148 (467)
Q Consensus 79 ~v~~l~l~~~~~---------~~~~~~~~~~~~l~~~~~~~l~~l-~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~ 148 (467)
+++.++++++.+ +..+.+++++|.++|.+|..+... ++|++|++++|.+++. +|..++++++|++|+++
T Consensus 248 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~ 326 (768)
T 3rgz_A 248 ELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA-VPPFFGSCSLLESLALS 326 (768)
T ss_dssp SCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC-CCGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc-cchHHhcCCCccEEECC
Confidence 456666655432 123455566677777777766554 7777777777777665 67777777777777777
Q ss_pred CCcCCCCCCcc-CCCCCcCCeeeccCccCC-CCCCCCh---------------------hhcCC--CCCCCEEECCCcCC
Q 038320 149 GASFAGNIPPS-FGNLSSLQILDLNTFYYS-SLESDDV---------------------EWLSR--LSSLQYLNLEGVDL 203 (467)
Q Consensus 149 ~n~l~~~~p~~-l~~l~~L~~L~l~~n~~~-~l~~~~~---------------------~~l~~--l~~L~~L~L~~n~~ 203 (467)
+|.+.+.+|.. +.++++|++|++++|.+. .++.... ..+.. +++|++|++++|.+
T Consensus 327 ~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l 406 (768)
T 3rgz_A 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406 (768)
T ss_dssp SSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred CCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc
Confidence 77776666654 667777777777777665 2332200 01222 55677777777766
Q ss_pred CCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccc
Q 038320 204 SKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIP 283 (467)
Q Consensus 204 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 283 (467)
++.. +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|.+++.+|
T Consensus 407 ~~~~---p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 483 (768)
T 3rgz_A 407 TGKI---PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483 (768)
T ss_dssp EEEC---CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cccc---CHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC
Confidence 6544 3366778888888888888888888888888899999999998888888888888999999999999988888
Q ss_pred hhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCcc
Q 038320 284 DAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNS 363 (467)
Q Consensus 284 ~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~ 363 (467)
..+.++++|++|++++|++ .+.+|..++.+++|++|++++|.+++.+|..+..++ +|+.|++++|.+++.+|..
T Consensus 484 ~~l~~l~~L~~L~L~~N~l-~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-----~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 484 SGLSNCTNLNWISLSNNRL-TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-----SLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp GGGGGCTTCCEEECCSSCC-CSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT-----TCCEEECCSSEEESBCCGG
T ss_pred HHHhcCCCCCEEEccCCcc-CCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC-----CCCEEECCCCccCCcCChH
Confidence 8888899999999999988 778888888899999999999999888888887776 8999999999888766654
Q ss_pred c----------------------------------------------------------------------cCCCCCCEE
Q 038320 364 L----------------------------------------------------------------------GQLENLKIL 373 (467)
Q Consensus 364 l----------------------------------------------------------------------~~l~~L~~L 373 (467)
+ +.+++|++|
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~L 637 (768)
T 3rgz_A 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637 (768)
T ss_dssp GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEE
T ss_pred HhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEE
Confidence 3 335679999
Q ss_pred EccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCC
Q 038320 374 QLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSL 453 (467)
Q Consensus 374 ~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i 453 (467)
++++|.++|.+|..++.+++|+.|+|++|+++|.+|..+..+++|++||+++|+++|.+|. .+..+++|+.|++++|
T Consensus 638 dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~-~l~~l~~L~~L~ls~N-- 714 (768)
T 3rgz_A 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ-AMSALTMLTEIDLSNN-- 714 (768)
T ss_dssp ECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG-GGGGCCCCSEEECCSS--
T ss_pred ECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh-HHhCCCCCCEEECcCC--
Confidence 9999999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CCCccEEEecCCC
Q 038320 454 APRLTLVFNVSPE 466 (467)
Q Consensus 454 ~~~~~~~g~~p~~ 466 (467)
.++|.||..
T Consensus 715 ----~l~g~iP~~ 723 (768)
T 3rgz_A 715 ----NLSGPIPEM 723 (768)
T ss_dssp ----EEEEECCSS
T ss_pred ----cccccCCCc
Confidence 889999964
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.7e-41 Score=338.46 Aligned_cols=368 Identities=21% Similarity=0.248 Sum_probs=308.0
Q ss_pred CCCCccc--EEecCCC--------CCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCC
Q 038320 64 DCCKWEG--VICDNST--------GKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIP 133 (467)
Q Consensus 64 ~~c~w~g--v~c~~~~--------~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~ 133 (467)
..|.|.+ |.|.... .+++.+++++ |.+++..|..+.++++|++|++++|.+.+...+
T Consensus 6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~-------------n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~ 72 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSL-------------NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN 72 (455)
T ss_dssp -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCS-------------SCCCEECTTTTSSCTTCCEEECCCCSTTCEECT
T ss_pred ceeEEEccccCcCCCCcccCCCCCCccCEEEecC-------------CccCcCChhHhccCccccEEECcCCcccceECc
Confidence 3455544 6665322 4577777777 889988899999999999999999998765346
Q ss_pred cccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCC-CCCChhhcCCCCCCCEEECCCcCCCCCCCchhh
Q 038320 134 NFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSL-ESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQ 212 (467)
Q Consensus 134 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l-~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 212 (467)
..+.++++|++|++++|.+++..|..+.++++|++|++++|.++.. +.. ..+.++++|++|++++|.+++..+. .
T Consensus 73 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~--~ 148 (455)
T 3v47_A 73 NTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG--NFFKPLTSLEMLVLRDNNIKKIQPA--S 148 (455)
T ss_dssp TTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHS--STTTTCTTCCEEECCSSBCCSCCCC--G
T ss_pred ccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCc--ccccCcccCCEEECCCCccCccCcc--c
Confidence 7899999999999999999988899999999999999999998752 111 1278899999999999999887543 1
Q ss_pred hcCCCCCCCEEECCCCcCcccCCccccCC--CCCcEEEccCCcCCCCcchh--------ccCCCCCCEEeccCCcccccc
Q 038320 213 ATNMLPSLSELHLPACGLFEFPPLSVVNF--SSLLFLDLSSNDFNSSIPQW--------LLNISKLAHLDLSANNLQGNI 282 (467)
Q Consensus 213 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~--------l~~l~~L~~L~l~~n~l~~~~ 282 (467)
.+..+++|++|++++|.+.+..+..+..+ .+|+.|++++|.+.+..+.. +..+++|+.|++++|.+++..
T Consensus 149 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 228 (455)
T 3v47_A 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228 (455)
T ss_dssp GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH
T ss_pred ccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccc
Confidence 36789999999999999999988888776 78999999999998654433 335689999999999999888
Q ss_pred chhhhCC---CCCCEEeCCCCCCCCCCC---------ccccc--CCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccE
Q 038320 283 PDAFANM---TSLRELDLSENSLIGGQI---------PKDLG--SLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLES 348 (467)
Q Consensus 283 ~~~l~~l---~~L~~L~L~~n~l~~~~~---------~~~l~--~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~ 348 (467)
+..+... ++|+.|++++|....... +..+. ..++|+.|++++|.+++..+..+..++ +|++
T Consensus 229 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~ 303 (455)
T 3v47_A 229 AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT-----DLEQ 303 (455)
T ss_dssp HHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT-----TCCE
T ss_pred hhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCC-----CCCE
Confidence 8777554 899999999986522111 11122 236899999999999998888887776 9999
Q ss_pred EECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCC
Q 038320 349 LDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPW 428 (467)
Q Consensus 349 L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~ 428 (467)
|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|++|++++|++
T Consensus 304 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 383 (455)
T 3v47_A 304 LTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383 (455)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcc
Confidence 99999999998899999999999999999999988888999999999999999999988899999999999999999999
Q ss_pred cccCChhhhCCCCCCCEEeccCCCCC
Q 038320 429 IGLVTEVHFSKLKNLKELHIAKYSLA 454 (467)
Q Consensus 429 ~~~~~~~~~~~l~~L~~l~l~~n~i~ 454 (467)
++..+. .|..+++|+.|++++|+++
T Consensus 384 ~~~~~~-~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 384 KSVPDG-IFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp SCCCTT-TTTTCTTCCEEECCSSCBC
T ss_pred ccCCHh-HhccCCcccEEEccCCCcc
Confidence 876555 7899999999999999554
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.4e-40 Score=342.44 Aligned_cols=354 Identities=19% Similarity=0.153 Sum_probs=224.1
Q ss_pred CCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCC
Q 038320 78 GKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIP 157 (467)
Q Consensus 78 ~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 157 (467)
..++.+++++ |.+++..|..+.++++|++|++++|++.+. .|..|+++++|++|++++|.+.+..|
T Consensus 33 ~~l~~L~Ls~-------------n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~ 98 (606)
T 3t6q_A 33 NSTECLEFSF-------------NVLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAE 98 (606)
T ss_dssp TTCCEEECTT-------------CCCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECT
T ss_pred CcCcEEEccC-------------CccCcCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccCh
Confidence 3567777776 778777777888888888888888888765 67778888888888888888887777
Q ss_pred ccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCcc
Q 038320 158 PSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLS 237 (467)
Q Consensus 158 ~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 237 (467)
..++++++|++|++++|.++.++... +.++++|++|++++|.+.+... ..+..+++|++|++++|.+.+..+..
T Consensus 99 ~~~~~l~~L~~L~L~~n~i~~l~~~~---~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~ 172 (606)
T 3t6q_A 99 TALSGPKALKHLFFIQTGISSIDFIP---LHNQKTLESLYLGSNHISSIKL---PKGFPTEKLKVLDFQNNAIHYLSKED 172 (606)
T ss_dssp TTTSSCTTCCEEECTTSCCSCGGGSC---CTTCTTCCEEECCSSCCCCCCC---CTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred hhhcccccccEeeccccCcccCCcch---hccCCcccEEECCCCcccccCc---ccccCCcccCEEEcccCcccccChhh
Confidence 78888888888888888887764333 6778888888888888776431 13344777888888887777776666
Q ss_pred ccCCCCCc--EEEccCCcCCCCcchhccCC--------------------------------------------------
Q 038320 238 VVNFSSLL--FLDLSSNDFNSSIPQWLLNI-------------------------------------------------- 265 (467)
Q Consensus 238 l~~l~~L~--~L~l~~n~l~~~~~~~l~~l-------------------------------------------------- 265 (467)
+..+++|+ .|++++|.+++..|..+...
T Consensus 173 ~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~ 252 (606)
T 3t6q_A 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252 (606)
T ss_dssp HHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG
T ss_pred hhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhh
Confidence 66777776 66666666654433322110
Q ss_pred -CCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhh-----
Q 038320 266 -SKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLS----- 339 (467)
Q Consensus 266 -~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~----- 339 (467)
.+|+.|++++|.+++..+..+..+++|++|++++|.+ ..+|..+..+++|++|++++|.+++..+..+..++
T Consensus 253 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 330 (606)
T 3t6q_A 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL--SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330 (606)
T ss_dssp GSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC--SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred cCceeEEEeecCccCccCHHHhccccCCCEEeccCCcc--CCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEE
Confidence 0344445555555444444455555555555555554 24444455555555555555555544443333332
Q ss_pred ---------------cccCCCccEEECcCCCCCcCC--CccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCC
Q 038320 340 ---------------KCANSSLESLDLGQNNLGGFL--PNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNN 402 (467)
Q Consensus 340 ---------------~~~~~~L~~L~L~~n~i~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n 402 (467)
....++|++|++++|.+++.. +..+..+++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus 331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred ECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence 001125566666666555443 445556666666666666666555566666666666666666
Q ss_pred cCcccChh-hhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCC
Q 038320 403 LMDGTIPK-SLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLA 454 (467)
Q Consensus 403 ~l~~~~p~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~ 454 (467)
++.+..+. .+..+++|++|++++|.+.+..+. .+..+++|+.|++++|+++
T Consensus 411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~ 462 (606)
T 3t6q_A 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ-LFDGLPALQHLNLQGNHFP 462 (606)
T ss_dssp CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT-TTTTCTTCCEEECTTCBCG
T ss_pred cCCCcccchhhhCcccCCEEECCCCccCCcCHH-HHhCCCCCCEEECCCCCCC
Confidence 66555443 356666666666666666665555 5666667777777777554
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.3e-42 Score=325.41 Aligned_cols=292 Identities=34% Similarity=0.523 Sum_probs=189.6
Q ss_pred cccHhhHHHHHHhHhcCCCCCCCCCCCC-CCCCCC--cccEEecCCC--CCEEEEEcCCCCCCCCcCCCCccccccc--c
Q 038320 34 RCVQNEKEALLKIKASVTDPSGRLSSWT-GEDCCK--WEGVICDNST--GKVVQLKLRSPEIPDSFTDNGTTYQLEG--E 106 (467)
Q Consensus 34 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~-~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~~~~~~~~~~~~~~l~~--~ 106 (467)
.|.++|++||++||+++.+|. .+.+|. +.+||. |.||+|+... ++|+.+++++ +.+++ .
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~-------------~~l~~~~~ 67 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-------------LNLPKPYP 67 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEEC-------------CCCSSCEE
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCC-------------CCccCCcc
Confidence 588999999999999998876 678994 678998 9999998655 8999999998 78888 8
Q ss_pred cCccccCCCCCCEEeCCC-CCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChh
Q 038320 107 ISPSVLDLKHLNYLDLSL-NNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVE 185 (467)
Q Consensus 107 ~~~~l~~l~~L~~L~L~~-n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~ 185 (467)
+|..+.++++|++|++++ |.+.+. +|..++++++|++|++++|.+++.+|..+.++++|++|++++|.++
T Consensus 68 ~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-------- 138 (313)
T 1ogq_A 68 IPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS-------- 138 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE--------
T ss_pred cChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC--------
Confidence 888888888888888885 777776 7888888888888888888887777776666666666666655543
Q ss_pred hcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCC
Q 038320 186 WLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNI 265 (467)
Q Consensus 186 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 265 (467)
+..|..+..+++|++|++++|.+++.+|..+..+
T Consensus 139 ----------------------------------------------~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 172 (313)
T 1ogq_A 139 ----------------------------------------------GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172 (313)
T ss_dssp ----------------------------------------------SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC
T ss_pred ----------------------------------------------CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhh
Confidence 2223334444555555555555555555555555
Q ss_pred C-CCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCC
Q 038320 266 S-KLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANS 344 (467)
Q Consensus 266 ~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~ 344 (467)
+ +|+.|++++|.+++..|..+..++ |+.|++++|.+ .+..+..+..+++|+.|++++|.+++..+. +... +
T Consensus 173 ~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l-----~ 244 (313)
T 1ogq_A 173 SKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML-EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLS-----K 244 (313)
T ss_dssp CTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE-EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCC-----T
T ss_pred hhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc-cCcCCHHHhcCCCCCEEECCCCceeeecCc-cccc-----C
Confidence 5 566666666666666666665555 66666666665 445555555666666666666555543332 1111 2
Q ss_pred CccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCc
Q 038320 345 SLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNL 403 (467)
Q Consensus 345 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~ 403 (467)
+|++|++++|++++.+|..+..+++|++|++++|.++|.+|.. ..+++|+.+++++|+
T Consensus 245 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred CCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 4455555555554444444444455555555555554444443 444444444444443
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.9e-40 Score=344.30 Aligned_cols=186 Identities=24% Similarity=0.237 Sum_probs=144.2
Q ss_pred CCCCCCEEeccCCccccc--cchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchh-hHHHhhhc
Q 038320 264 NISKLAHLDLSANNLQGN--IPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEII-EFVDRLSK 340 (467)
Q Consensus 264 ~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~~~~ 340 (467)
.+++|+.|++++|.+++. .+..+..+++|++|++++|.+ ..++..+..+++|+.|++++|.+.+..+ ..+..++
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~- 424 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA--IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE- 424 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE--EEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT-
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcc--ccchhhccCCCCCCeeECCCCccCCccChhhhhccc-
Confidence 345566666666666544 366677777777777777776 2355677778888888888888777655 4455444
Q ss_pred ccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcc-cccccccCCCCCCEEECcCCcCcccChhhhcCCCCCC
Q 038320 341 CANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRG-SIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLV 419 (467)
Q Consensus 341 ~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 419 (467)
+|++|++++|.+++..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|++++..|..+..+++|+
T Consensus 425 ----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 500 (606)
T 3vq2_A 425 ----KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500 (606)
T ss_dssp ----TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ----cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCC
Confidence 88888888888888888888888888888888888887 3677788888888888888888888888888888888
Q ss_pred EEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCCCCc
Q 038320 420 VLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRL 457 (467)
Q Consensus 420 ~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~ 457 (467)
+|++++|++++.+|. .|..+++|+.|++++|+|+..+
T Consensus 501 ~L~Ls~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~p 537 (606)
T 3vq2_A 501 LLNMSHNNLLFLDSS-HYNQLYSLSTLDCSFNRIETSK 537 (606)
T ss_dssp EEECCSSCCSCEEGG-GTTTCTTCCEEECTTSCCCCEE
T ss_pred EEECCCCcCCCcCHH-HccCCCcCCEEECCCCcCcccC
Confidence 888888888887777 7888888888888888877444
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.2e-39 Score=336.32 Aligned_cols=228 Identities=26% Similarity=0.311 Sum_probs=131.2
Q ss_pred CCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCC
Q 038320 220 LSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSE 299 (467)
Q Consensus 220 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 299 (467)
|+.|++++|.+.+..+..+..+++|++|++++|.++ .+|..+.++++|+.|++++|.+.+..|..+..+++|++|++++
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred eeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 334444444444444444555556666666666555 4555555555666666666655554455555555555555555
Q ss_pred CCCCCCCCcc-cccCCCCCCEEeccCCcCC--------------------------CchhhHHHhhhcccCCCccEEECc
Q 038320 300 NSLIGGQIPK-DLGSLCNLWDLDLSGNDLD--------------------------GEIIEFVDRLSKCANSSLESLDLG 352 (467)
Q Consensus 300 n~l~~~~~~~-~l~~l~~L~~L~l~~n~l~--------------------------~~~~~~l~~~~~~~~~~L~~L~L~ 352 (467)
|.+ .+.++. .+..+++|++|++++|.++ +..+..+..++ +|++|+++
T Consensus 335 n~~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~l~ 408 (606)
T 3t6q_A 335 NTK-RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP-----QLELLDLA 408 (606)
T ss_dssp CSS-CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCT-----TCSEEECT
T ss_pred CCc-ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCc-----cCCeEECC
Confidence 554 222222 2444455555555555444 43333333332 56666666
Q ss_pred CCCCCcCCCc-cccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCccc---ChhhhcCCCCCCEEeCcCCCC
Q 038320 353 QNNLGGFLPN-SLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGT---IPKSLGKLSHLVVLDISGNPW 428 (467)
Q Consensus 353 ~n~i~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~---~p~~l~~l~~L~~L~l~~n~~ 428 (467)
+|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++. .+..+..+++|++|++++|++
T Consensus 409 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l 488 (606)
T 3t6q_A 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488 (606)
T ss_dssp TCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC
T ss_pred CCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc
Confidence 6666554333 356666666666666666666666666677777777777776652 224566677777777777777
Q ss_pred cccCChhhhCCCCCCCEEeccCCCCCC
Q 038320 429 IGLVTEVHFSKLKNLKELHIAKYSLAP 455 (467)
Q Consensus 429 ~~~~~~~~~~~l~~L~~l~l~~n~i~~ 455 (467)
++..|. .|..+++|+.|++++|+++.
T Consensus 489 ~~~~~~-~~~~l~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 489 SSIDQH-AFTSLKMMNHVDLSHNRLTS 514 (606)
T ss_dssp CEECTT-TTTTCTTCCEEECCSSCCCG
T ss_pred CccChh-hhccccCCCEEECCCCccCc
Confidence 766666 67777777777777776653
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-39 Score=333.67 Aligned_cols=349 Identities=23% Similarity=0.238 Sum_probs=229.7
Q ss_pred CCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCC
Q 038320 78 GKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIP 157 (467)
Q Consensus 78 ~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 157 (467)
.+++.+++++ |.+++..+..+..+++|++|++++|++++. .+..++++++|++|++++|.+++..|
T Consensus 28 ~~l~~L~Ls~-------------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (570)
T 2z63_A 28 FSTKNLDLSF-------------NPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLAL 93 (570)
T ss_dssp SSCCEEECCS-------------CCCCEECTTTTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred ccccEEEccC-------------CccCccChhHhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCH
Confidence 4577778777 555555555566666666666666665543 44555666666666666666655455
Q ss_pred ccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCcc
Q 038320 158 PSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLS 237 (467)
Q Consensus 158 ~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 237 (467)
..|.++++|++|++++|.++.++... ++++++|++|++++|.+.... .+..+..+++|++|++++|.+.+..+..
T Consensus 94 ~~~~~l~~L~~L~L~~n~l~~l~~~~---~~~l~~L~~L~L~~n~l~~~~--lp~~~~~l~~L~~L~l~~n~l~~~~~~~ 168 (570)
T 2z63_A 94 GAFSGLSSLQKLVAVETNLASLENFP---IGHLKTLKELNVAHNLIQSFK--LPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (570)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCS---CTTCTTCCEEECCSSCCCCCC--CCGGGGGCTTCCEEECTTSCCCEECGGG
T ss_pred hhhcCccccccccccccccccCCCcc---ccccccccEEecCCCccceec--ChhhhcccCCCCEEeCcCCccceecHHH
Confidence 55666666666666666655554432 455566666666666555421 0224445555555555555544333222
Q ss_pred cc------------------------------------------------------------------------------
Q 038320 238 VV------------------------------------------------------------------------------ 239 (467)
Q Consensus 238 l~------------------------------------------------------------------------------ 239 (467)
+.
T Consensus 169 ~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~ 248 (570)
T 2z63_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248 (570)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCT
T ss_pred ccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcch
Confidence 22
Q ss_pred -------------------------------CCCCCcEEEccCCcCCCCcchhcc-------------------------
Q 038320 240 -------------------------------NFSSLLFLDLSSNDFNSSIPQWLL------------------------- 263 (467)
Q Consensus 240 -------------------------------~l~~L~~L~l~~n~l~~~~~~~l~------------------------- 263 (467)
.+++|++|++++|.++ .+|..+.
T Consensus 249 ~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L 327 (570)
T 2z63_A 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 327 (570)
T ss_dssp TTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSC
T ss_pred hhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccCCccEEeeccCcccccCccccccc
Confidence 2344455555544443 2333222
Q ss_pred -----------------CCCCCCEEeccCCcccccc--chhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccC
Q 038320 264 -----------------NISKLAHLDLSANNLQGNI--PDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSG 324 (467)
Q Consensus 264 -----------------~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~ 324 (467)
.+++|+.|++++|.+++.. +..+..+++|++|++++|.+ . .++..+..+++|+.|++++
T Consensus 328 ~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l-~-~~~~~~~~l~~L~~L~l~~ 405 (570)
T 2z63_A 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-I-TMSSNFLGLEQLEHLDFQH 405 (570)
T ss_dssp CEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE-E-EEEEEEETCTTCCEEECTT
T ss_pred CEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcc-c-cccccccccCCCCEEEccC
Confidence 3344555555555544332 44555666666666666665 2 2333366777777777777
Q ss_pred CcCCCchh-hHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCc-ccccccccCCCCCCEEECcCC
Q 038320 325 NDLDGEII-EFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFR-GSIPESIGNLSSLRELYLHNN 402 (467)
Q Consensus 325 n~l~~~~~-~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~~~~L~~L~Ls~n 402 (467)
|.+.+..+ ..+..+ ++|++|++++|.+++..+..+..+++|++|++++|.++ +.+|..+..+++|++|++++|
T Consensus 406 n~l~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 406 SNLKQMSEFSVFLSL-----RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480 (570)
T ss_dssp SEEESCTTSCTTTTC-----TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred CccccccchhhhhcC-----CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence 77766544 233443 38999999999999888889999999999999999997 578888999999999999999
Q ss_pred cCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCC
Q 038320 403 LMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLA 454 (467)
Q Consensus 403 ~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~ 454 (467)
++++..|..+..+++|++|++++|++++..+. .|..+++|+.|++++|+++
T Consensus 481 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 481 QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG-IFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSSCBC
T ss_pred ccccCChhhhhcccCCCEEeCCCCcCCCCCHH-HhhcccCCcEEEecCCccc
Confidence 99988899999999999999999999987776 7899999999999999443
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.9e-40 Score=344.90 Aligned_cols=342 Identities=21% Similarity=0.220 Sum_probs=295.5
Q ss_pred CcCCCCcccccccc-----------------cCcccc--CCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCc-C
Q 038320 93 SFTDNGTTYQLEGE-----------------ISPSVL--DLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGAS-F 152 (467)
Q Consensus 93 ~~~~~~~~~~l~~~-----------------~~~~l~--~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~-l 152 (467)
.+.+++++|.++|. +|..++ ++++|++|++++|.+.+. +|..++++++|++|++++|+ +
T Consensus 208 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~~l 286 (636)
T 4eco_A 208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK-LPTFLKALPEMQLINVACNRGI 286 (636)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS-CCTTTTTCSSCCEEECTTCTTS
T ss_pred CCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc-ChHHHhcCCCCCEEECcCCCCC
Confidence 34555555888886 999999 999999999999999987 99999999999999999998 9
Q ss_pred CC-CCCccCCCC------CcCCeeeccCccCCCCCC--CChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEE
Q 038320 153 AG-NIPPSFGNL------SSLQILDLNTFYYSSLES--DDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSEL 223 (467)
Q Consensus 153 ~~-~~p~~l~~l------~~L~~L~l~~n~~~~l~~--~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L 223 (467)
++ .+|..++++ ++|++|++++|.++.+|. . +.++++|++|++++|.+++..+ .+..+++|++|
T Consensus 287 ~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~----l~~l~~L~~L~L~~N~l~g~ip----~~~~l~~L~~L 358 (636)
T 4eco_A 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS----LQKMKKLGMLECLYNQLEGKLP----AFGSEIKLASL 358 (636)
T ss_dssp CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHH----HTTCTTCCEEECCSCCCEEECC----CCEEEEEESEE
T ss_pred ccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhh----hccCCCCCEEeCcCCcCccchh----hhCCCCCCCEE
Confidence 88 889888776 999999999999997776 4 8999999999999999985543 67778999999
Q ss_pred ECCCCcCcccCCccccCCCC-CcEEEccCCcCCCCcchhccCCC--CCCEEeccCCccccccchhhh-------CCCCCC
Q 038320 224 HLPACGLFEFPPLSVVNFSS-LLFLDLSSNDFNSSIPQWLLNIS--KLAHLDLSANNLQGNIPDAFA-------NMTSLR 293 (467)
Q Consensus 224 ~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~l~-------~l~~L~ 293 (467)
++++|.+. .+|..+..+++ |++|++++|.++ .+|..+...+ +|+.|++++|.+.+..|..+. .+++|+
T Consensus 359 ~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~ 436 (636)
T 4eco_A 359 NLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436 (636)
T ss_dssp ECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred ECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence 99999999 66677999999 999999999998 8888877655 899999999999999888888 788999
Q ss_pred EEeCCCCCCCCCCCcc-cccCCCCCCEEeccCCcCCCchhhHHHhhh---cccCCCccEEECcCCCCCcCCCcccc--CC
Q 038320 294 ELDLSENSLIGGQIPK-DLGSLCNLWDLDLSGNDLDGEIIEFVDRLS---KCANSSLESLDLGQNNLGGFLPNSLG--QL 367 (467)
Q Consensus 294 ~L~L~~n~l~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~---~~~~~~L~~L~L~~n~i~~~~~~~l~--~l 367 (467)
+|++++|.+ . .+|. .+..+++|++|++++|.++ .+|....... ...+++|++|++++|+++ .+|..+. .+
T Consensus 437 ~L~Ls~N~l-~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l 512 (636)
T 4eco_A 437 SINLSNNQI-S-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTL 512 (636)
T ss_dssp EEECCSSCC-C-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTC
T ss_pred EEECcCCcc-C-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccC
Confidence 999999999 4 4554 4567999999999999998 4443322211 001127999999999999 6788886 99
Q ss_pred CCCCEEEccCCcCcccccccccCCCCCCEEEC------cCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCC
Q 038320 368 ENLKILQLWGNLFRGSIPESIGNLSSLRELYL------HNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLK 441 (467)
Q Consensus 368 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L------s~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 441 (467)
++|++|++++|.+++ +|..+..+++|+.|++ ++|++.+.+|..+..+++|++|++++|++ +.+|. .+. +
T Consensus 513 ~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~-~~~--~ 587 (636)
T 4eco_A 513 PYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE-KIT--P 587 (636)
T ss_dssp TTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS-CCC--T
T ss_pred CCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCH-hHh--C
Confidence 999999999999997 8999999999999999 56788889999999999999999999999 77887 444 8
Q ss_pred CCCEEeccCCCCC
Q 038320 442 NLKELHIAKYSLA 454 (467)
Q Consensus 442 ~L~~l~l~~n~i~ 454 (467)
+|+.|++++|++.
T Consensus 588 ~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 588 NISVLDIKDNPNI 600 (636)
T ss_dssp TCCEEECCSCTTC
T ss_pred cCCEEECcCCCCc
Confidence 9999999999886
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.5e-39 Score=333.72 Aligned_cols=359 Identities=26% Similarity=0.303 Sum_probs=247.8
Q ss_pred CCCcccEEecCCC-----------CCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCC
Q 038320 65 CCKWEGVICDNST-----------GKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIP 133 (467)
Q Consensus 65 ~c~w~gv~c~~~~-----------~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~ 133 (467)
.|.|.|+ |+... .+++.+++++ |.+++..|..+..+++|++|++++|++++. .|
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~-------------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~ 67 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSF-------------NKITYIGHGDLRACANLQVLILKSSRINTI-EG 67 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCS-------------SCCCEECSSTTSSCTTCCEEECTTSCCCEE-CT
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcC-------------CccCccChhhhhcCCcccEEECCCCCcCcc-Ch
Confidence 3778777 75432 2455666665 888888888889999999999999988865 66
Q ss_pred cccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhh
Q 038320 134 NFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQA 213 (467)
Q Consensus 134 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~ 213 (467)
..++++++|++|++++|.+++..|..++++++|++|++++|.++.++.. ..+.++++|++|++++|.+.+..+ ...
T Consensus 68 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~~l~~L~~L~L~~n~~~~~~~--~~~ 143 (549)
T 2z81_A 68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT--SLFPNLTNLQTLRIGNVETFSEIR--RID 143 (549)
T ss_dssp TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSS--CSCTTCTTCCEEEEEESSSCCEEC--TTT
T ss_pred hhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchh--hhhhccCCccEEECCCCccccccC--Hhh
Confidence 7888899999999999999876666688999999999999988754321 127888899999998887433321 235
Q ss_pred cCCCCCCCEEECCCCcCcccCCccccC------------------------CCCCcEEEccCCcCCCCc--chh-ccCC-
Q 038320 214 TNMLPSLSELHLPACGLFEFPPLSVVN------------------------FSSLLFLDLSSNDFNSSI--PQW-LLNI- 265 (467)
Q Consensus 214 ~~~l~~L~~L~l~~n~~~~~~~~~l~~------------------------l~~L~~L~l~~n~l~~~~--~~~-l~~l- 265 (467)
+..+++|++|++++|.+.+..+..+.. +++|++|++++|.+++.. +.. ...+
T Consensus 144 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 223 (549)
T 2z81_A 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSS 223 (549)
T ss_dssp TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCC
T ss_pred hhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhh
Confidence 677888888888888888777766654 455666666666555421 000 0001
Q ss_pred --------------------------------------------------------------------------------
Q 038320 266 -------------------------------------------------------------------------------- 265 (467)
Q Consensus 266 -------------------------------------------------------------------------------- 265 (467)
T Consensus 224 ~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~ 303 (549)
T 2z81_A 224 PMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303 (549)
T ss_dssp CCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCC
T ss_pred cccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccch
Confidence
Q ss_pred ------CCCCEEeccCCccccccchhh-hCCCCCCEEeCCCCCCCCCCCc---ccccCCCCCCEEeccCCcCCCchh--h
Q 038320 266 ------SKLAHLDLSANNLQGNIPDAF-ANMTSLRELDLSENSLIGGQIP---KDLGSLCNLWDLDLSGNDLDGEII--E 333 (467)
Q Consensus 266 ------~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~l~~n~l~~~~~--~ 333 (467)
++|+.|++++|.+. .+|..+ ..+++|++|++++|.+ .+.+| ..++.+++|++|++++|.+++..+ .
T Consensus 304 ~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 381 (549)
T 2z81_A 304 TVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLM-VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381 (549)
T ss_dssp HHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCC-CHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHH
T ss_pred hhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcc-ccccccchhhhhccccCcEEEccCCcccccccchh
Confidence 12333333333332 234333 4577888888888877 44443 235677888888888888876432 3
Q ss_pred HHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccc------------------cCCCCCC
Q 038320 334 FVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESI------------------GNLSSLR 395 (467)
Q Consensus 334 ~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l------------------~~~~~L~ 395 (467)
.+..++ +|++|++++|+++ .+|..+..+++|++|++++|.+++ +|..+ ..+++|+
T Consensus 382 ~~~~l~-----~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~ 454 (549)
T 2z81_A 382 ILLTLK-----NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQ 454 (549)
T ss_dssp HGGGCT-----TCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCCCCCTTCC
T ss_pred hhhcCC-----CCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchhcCCceEEECCCCChhhhcccCChhc
Confidence 344443 8888888888887 567777777778888877777652 22221 2567788
Q ss_pred EEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCC
Q 038320 396 ELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLA 454 (467)
Q Consensus 396 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~ 454 (467)
+|++++|+++ .+|. ...+++|++|++++|++++.++. .|..+++|+.|++++|++.
T Consensus 455 ~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 455 ELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDG-IFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp EEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTT-GGGGCTTCCEEECCSSCBC
T ss_pred EEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHH-HHhcCcccCEEEecCCCcc
Confidence 8888888887 5665 45788888888888888877766 6788888888888888543
No 13
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.4e-38 Score=327.02 Aligned_cols=342 Identities=22% Similarity=0.266 Sum_probs=269.7
Q ss_pred CCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCC
Q 038320 78 GKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIP 157 (467)
Q Consensus 78 ~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 157 (467)
.+++.+++++ |.+++..+..+..+++|++|++++|++++. .|..+.++++|++|++++|.++ .+|
T Consensus 52 ~~L~~L~Ls~-------------N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp 116 (562)
T 3a79_B 52 PRTKALSLSQ-------------NSISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQ-NIS 116 (562)
T ss_dssp TTCCEEECCS-------------SCCCCCCGGGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCCC-EEC
T ss_pred CCcCEEECCC-------------CCccccChhhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcCC-ccC
Confidence 5677888887 888888888999999999999999999875 6888999999999999999998 677
Q ss_pred ccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcC--cccCC
Q 038320 158 PSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGL--FEFPP 235 (467)
Q Consensus 158 ~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~--~~~~~ 235 (467)
.. .+++|++|++++|.++.++.. ..+.++++|++|++++|.++... ...+..+ +|++|++++|.+ .+..+
T Consensus 117 ~~--~l~~L~~L~Ls~N~l~~l~~p--~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L-~L~~L~L~~n~l~~~~~~~ 188 (562)
T 3a79_B 117 CC--PMASLRHLDLSFNDFDVLPVC--KEFGNLTKLTFLGLSAAKFRQLD---LLPVAHL-HLSCILLDLVSYHIKGGET 188 (562)
T ss_dssp SC--CCTTCSEEECCSSCCSBCCCC--GGGGGCTTCCEEEEECSBCCTTT---TGGGTTS-CEEEEEEEESSCCCCSSSC
T ss_pred cc--ccccCCEEECCCCCccccCch--HhhcccCcccEEecCCCccccCc---hhhhhhc-eeeEEEeecccccccccCc
Confidence 66 899999999999999876531 12888999999999999998643 2233333 449999999988 66555
Q ss_pred ccccCCC-------------------------------------------------------------------------
Q 038320 236 LSVVNFS------------------------------------------------------------------------- 242 (467)
Q Consensus 236 ~~l~~l~------------------------------------------------------------------------- 242 (467)
..+..+.
T Consensus 189 ~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~ 268 (562)
T 3a79_B 189 ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK 268 (562)
T ss_dssp CEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHH
T ss_pred ccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHH
Confidence 5444322
Q ss_pred --------CCcEEEccCCcCCCCcchhc-----cCCC--------------------------CCCEEeccCCccccccc
Q 038320 243 --------SLLFLDLSSNDFNSSIPQWL-----LNIS--------------------------KLAHLDLSANNLQGNIP 283 (467)
Q Consensus 243 --------~L~~L~l~~n~l~~~~~~~l-----~~l~--------------------------~L~~L~l~~n~l~~~~~ 283 (467)
+|++|++++|.+++.+|..+ .+++ +|+.|++++|.+....
T Consensus 269 ~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~- 347 (562)
T 3a79_B 269 LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV- 347 (562)
T ss_dssp HHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC-
T ss_pred HHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc-
Confidence 55566666666665555544 2222 2444444444443211
Q ss_pred hhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCC--chhhHHHhhhcccCCCccEEECcCCCCCcCCC
Q 038320 284 DAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDG--EIIEFVDRLSKCANSSLESLDLGQNNLGGFLP 361 (467)
Q Consensus 284 ~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~ 361 (467)
....+++|++|++++|.+ .+..|..+..+++|+.|++++|.+++ ..+..+..++ +|++|++++|++++.+|
T Consensus 348 -~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-----~L~~L~l~~N~l~~~~~ 420 (562)
T 3a79_B 348 -CPPSPSSFTFLNFTQNVF-TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS-----SLETLDVSLNSLNSHAY 420 (562)
T ss_dssp -CCSSCCCCCEEECCSSCC-CTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT-----TCCEEECTTSCCBSCCS
T ss_pred -CccCCCCceEEECCCCcc-ccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCC-----CCCEEECCCCcCCCccC
Confidence 016789999999999999 77788899999999999999999987 3345555554 99999999999998455
Q ss_pred c-cccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCC
Q 038320 362 N-SLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKL 440 (467)
Q Consensus 362 ~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l 440 (467)
. .+..+++|++|++++|.+++.+|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|++++ +|...|..+
T Consensus 421 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l 496 (562)
T 3a79_B 421 DRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRL 496 (562)
T ss_dssp SCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTC
T ss_pred hhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcC
Confidence 4 588899999999999999987776654 79999999999998 788888899999999999999984 665358999
Q ss_pred CCCCEEeccCCCCC
Q 038320 441 KNLKELHIAKYSLA 454 (467)
Q Consensus 441 ~~L~~l~l~~n~i~ 454 (467)
++|+.|++++|++.
T Consensus 497 ~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 497 TSLQYIWLHDNPWD 510 (562)
T ss_dssp TTCCCEECCSCCBC
T ss_pred CCCCEEEecCCCcC
Confidence 99999999999665
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.7e-39 Score=333.26 Aligned_cols=364 Identities=22% Similarity=0.203 Sum_probs=279.8
Q ss_pred CCEEEEEcCCCCCC-----------CCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEE
Q 038320 78 GKVVQLKLRSPEIP-----------DSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLN 146 (467)
Q Consensus 78 ~~v~~l~l~~~~~~-----------~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~ 146 (467)
.+++.++++++.+. ..+.+++++|.+++..|..+.++++|++|++++|.+++. .|..++++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC-CTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccccc-ChhhcCCcccCCEEE
Confidence 46788888775432 125566667777777777778888888888888887765 577788888888888
Q ss_pred cCCCcCCCCCCccCCCCCcCCeeeccCccCCC--CCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhh-----------
Q 038320 147 LSGASFAGNIPPSFGNLSSLQILDLNTFYYSS--LESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQA----------- 213 (467)
Q Consensus 147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~--l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~----------- 213 (467)
+++|.+.+..+..++++++|++|++++|.+.. +|.. +.++++|++|++++|.+++..+.....
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L 186 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY----FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG----GGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEE
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHh----HhhcCCCCEEEccCCcceecChhhhhhhhcccccccee
Confidence 88888776665667788888888888887764 3333 777888888888877766543221100
Q ss_pred --------------------------------------------------------------------------------
Q 038320 214 -------------------------------------------------------------------------------- 213 (467)
Q Consensus 214 -------------------------------------------------------------------------------- 213 (467)
T Consensus 187 ~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 266 (606)
T 3vq2_A 187 DMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266 (606)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEE
T ss_pred eccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhe
Confidence
Q ss_pred ------------------------------------cCCCCCCCEEECCCCcCcccC-------------------Cccc
Q 038320 214 ------------------------------------TNMLPSLSELHLPACGLFEFP-------------------PLSV 238 (467)
Q Consensus 214 ------------------------------------~~~l~~L~~L~l~~n~~~~~~-------------------~~~l 238 (467)
+..+++|++|++++|.+...+ +..+
T Consensus 267 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~ 346 (606)
T 3vq2_A 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKK 346 (606)
T ss_dssp EECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCC
T ss_pred eccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhh
Confidence 112223444444444432111 0122
Q ss_pred cCCCCCcEEEccCCcCCCC--cchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCc-ccccCCC
Q 038320 239 VNFSSLLFLDLSSNDFNSS--IPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIP-KDLGSLC 315 (467)
Q Consensus 239 ~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~l~~l~ 315 (467)
..+++|++|++++|.+++. .+..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+ .+..+ ..+..++
T Consensus 347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTL-KRVTEFSAFLSLE 424 (606)
T ss_dssp CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEE-ESTTTTTTTTTCT
T ss_pred ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCcc-CCccChhhhhccc
Confidence 3455666666666666544 36778899999999999999885 567889999999999999998 55555 6788999
Q ss_pred CCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCc-CCCccccCCCCCCEEEccCCcCcccccccccCCCCC
Q 038320 316 NLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGG-FLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSL 394 (467)
Q Consensus 316 ~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L 394 (467)
+|++|++++|.+++..+..+..++ +|++|++++|.+++ .+|..++.+++|++|++++|.+++..|..+..+++|
T Consensus 425 ~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGIFLGLT-----SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499 (606)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCT-----TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cCCEEECcCCCCCccchhhhcCCC-----CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence 999999999999988888777766 99999999999997 478899999999999999999999889999999999
Q ss_pred CEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCC-CCCEEeccCCCCCC
Q 038320 395 RELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLK-NLKELHIAKYSLAP 455 (467)
Q Consensus 395 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~l~l~~n~i~~ 455 (467)
++|++++|++++..|..+..+++|++|++++|+++ .+|. .+..++ +|+.|++++|++..
T Consensus 500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~-~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKG-ILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEES-CGGGSCTTCCEEECCSCCCCC
T ss_pred CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCH-hHhhhcccCcEEEccCCCccc
Confidence 99999999999989999999999999999999988 5666 477887 59999999997763
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-38 Score=324.23 Aligned_cols=341 Identities=21% Similarity=0.286 Sum_probs=272.5
Q ss_pred CCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCC
Q 038320 78 GKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIP 157 (467)
Q Consensus 78 ~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 157 (467)
.+++.+++++ |.+++..|..+..+++|++|++++|++++. .|..++++++|++|++++|.++ .+|
T Consensus 21 ~~L~~L~Ls~-------------n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp 85 (520)
T 2z7x_B 21 QKTTILNISQ-------------NYISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKLV-KIS 85 (520)
T ss_dssp TTCSEEECCS-------------SCCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCCC-EEE
T ss_pred ccccEEECCC-------------CcccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCcee-ecC
Confidence 4566666666 888887778899999999999999999865 6888999999999999999998 577
Q ss_pred ccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCC--CEEECCCCcC--ccc
Q 038320 158 PSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSL--SELHLPACGL--FEF 233 (467)
Q Consensus 158 ~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L--~~L~l~~n~~--~~~ 233 (467)
.. .+++|++|++++|.++.++.. ..++++++|++|++++|.+++. .+..+++| ++|++++|.+ .+.
T Consensus 86 ~~--~l~~L~~L~L~~N~l~~~~~p--~~~~~l~~L~~L~L~~n~l~~~------~~~~l~~L~L~~L~l~~n~l~~~~~ 155 (520)
T 2z7x_B 86 CH--PTVNLKHLDLSFNAFDALPIC--KEFGNMSQLKFLGLSTTHLEKS------SVLPIAHLNISKVLLVLGETYGEKE 155 (520)
T ss_dssp CC--CCCCCSEEECCSSCCSSCCCC--GGGGGCTTCCEEEEEESSCCGG------GGGGGTTSCEEEEEEEECTTTTSSC
T ss_pred cc--ccCCccEEeccCCccccccch--hhhccCCcceEEEecCcccchh------hccccccceeeEEEeeccccccccc
Confidence 65 899999999999998864321 1288899999999999988763 34556666 9999999988 555
Q ss_pred CCccccCCC-----------------------------------------------------------------------
Q 038320 234 PPLSVVNFS----------------------------------------------------------------------- 242 (467)
Q Consensus 234 ~~~~l~~l~----------------------------------------------------------------------- 242 (467)
.|..+..+.
T Consensus 156 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 235 (520)
T 2z7x_B 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235 (520)
T ss_dssp CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHH
T ss_pred ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHH
Confidence 554444322
Q ss_pred ------------CCcEEEccCCcCCCCcchhc-----cCCCCCCEEeccCCccccccc-hh-------------------
Q 038320 243 ------------SLLFLDLSSNDFNSSIPQWL-----LNISKLAHLDLSANNLQGNIP-DA------------------- 285 (467)
Q Consensus 243 ------------~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~-~~------------------- 285 (467)
+|++|++++|.+++.+|..+ .++++|+.+++++|.+ .+| ..
T Consensus 236 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~ 313 (520)
T 2z7x_B 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTR 313 (520)
T ss_dssp HHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCc
Confidence 56777777777776777766 5566555555555554 222 11
Q ss_pred ------hhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCC--chhhHHHhhhcccCCCccEEECcCCCCC
Q 038320 286 ------FANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDG--EIIEFVDRLSKCANSSLESLDLGQNNLG 357 (467)
Q Consensus 286 ------l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~~~~~~~~~L~~L~L~~n~i~ 357 (467)
...+++|++|++++|.+ .+..|..+..+++|++|++++|.+++ ..|..+..++ +|++|++++|.++
T Consensus 314 l~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~-----~L~~L~Ls~N~l~ 387 (520)
T 2z7x_B 314 MVHMLCPSKISPFLHLDFSNNLL-TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK-----SLQQLDISQNSVS 387 (520)
T ss_dssp CCCCCCCSSCCCCCEEECCSSCC-CTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT-----TCCEEECCSSCCB
T ss_pred cccccchhhCCcccEEEeECCcc-ChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCC-----CCCEEECCCCcCC
Confidence 15788999999999999 77788889999999999999999997 4556666665 9999999999999
Q ss_pred cCCCc-cccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhh
Q 038320 358 GFLPN-SLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVH 436 (467)
Q Consensus 358 ~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~ 436 (467)
+.+|. .+..+++|++|++++|.+++.+|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|++++ +|...
T Consensus 388 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~ 463 (520)
T 2z7x_B 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGI 463 (520)
T ss_dssp CCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTT
T ss_pred cccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHH
Confidence 85555 478899999999999999988877664 79999999999998 888888899999999999999884 66536
Q ss_pred hCCCCCCCEEeccCCCCCC
Q 038320 437 FSKLKNLKELHIAKYSLAP 455 (467)
Q Consensus 437 ~~~l~~L~~l~l~~n~i~~ 455 (467)
|..+++|+.|++++|+++.
T Consensus 464 ~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 464 FDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp TTTCTTCCEEECCSSCBCC
T ss_pred hccCCcccEEECcCCCCcc
Confidence 8899999999999996653
No 16
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.1e-38 Score=328.55 Aligned_cols=354 Identities=25% Similarity=0.241 Sum_probs=183.4
Q ss_pred CCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCC
Q 038320 78 GKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIP 157 (467)
Q Consensus 78 ~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 157 (467)
.+++.+++++ |.+++..+..+.++++|++|++++|.+++. .|..++++++|++|++++|.+++..+
T Consensus 25 ~~l~~L~Ls~-------------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~ 90 (680)
T 1ziw_A 25 TNITVLNLTH-------------NQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSD 90 (680)
T ss_dssp TTCSEEECCS-------------SCCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCT
T ss_pred CCCcEEECCC-------------CCCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccCh
Confidence 4678888887 444444444455555555555555555443 44445555555555555555543222
Q ss_pred ccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCcc
Q 038320 158 PSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLS 237 (467)
Q Consensus 158 ~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 237 (467)
..|.++++|++|++++|.+..+++.. +.++++|++|++++|.+++..+. .+..+++|++|++++|.+++..+..
T Consensus 91 ~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~ 164 (680)
T 1ziw_A 91 KTFAFCTNLTELHLMSNSIQKIKNNP---FVKQKNLITLDLSHNGLSSTKLG---TQVQLENLQELLLSNNKIQALKSEE 164 (680)
T ss_dssp TTTTTCTTCSEEECCSSCCCCCCSCT---TTTCTTCCEEECCSSCCSCCCCC---SSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred hhhccCCCCCEEECCCCccCccChhH---ccccCCCCEEECCCCcccccCch---hhcccccCCEEEccCCcccccCHHH
Confidence 33555555555555555554444322 44455555555555554444321 3344445555555555444444332
Q ss_pred cc--CCCCCcEEEccCCcCC---------------------------------------------------CCcchhccC
Q 038320 238 VV--NFSSLLFLDLSSNDFN---------------------------------------------------SSIPQWLLN 264 (467)
Q Consensus 238 l~--~l~~L~~L~l~~n~l~---------------------------------------------------~~~~~~l~~ 264 (467)
+. .+++|++|++++|.++ +..|.++.+
T Consensus 165 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~ 244 (680)
T 1ziw_A 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244 (680)
T ss_dssp HGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG
T ss_pred hhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc
Confidence 22 2344444444444444 333444443
Q ss_pred CCC--CCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchh----hHHHhh
Q 038320 265 ISK--LAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEII----EFVDRL 338 (467)
Q Consensus 265 l~~--L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~l~~~ 338 (467)
++. |+.|++++|.+++..+..++.+++|++|++++|.+ .+..+..+..+++|+.|++++|...+.++ ..+...
T Consensus 245 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~ 323 (680)
T 1ziw_A 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI-QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323 (680)
T ss_dssp GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCB-SEECTTTTTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCcc-CccChhhhcCCCCccEEeccchhhhcccccccccccChh
Confidence 322 55555555555544445555555555555555555 44444455555555555555543332111 000111
Q ss_pred hcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccc-c-cccc--CCCCCCEEECcCCcCcccChhhhcC
Q 038320 339 SKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSI-P-ESIG--NLSSLRELYLHNNLMDGTIPKSLGK 414 (467)
Q Consensus 339 ~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~-~~l~--~~~~L~~L~Ls~n~l~~~~p~~l~~ 414 (467)
....+++|++|++++|.+++..+..+..+++|++|++++|.+.... + ..+. ..++|+.|++++|++++..|..+..
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence 1223347888888888888777777788887877777776543211 1 1111 1235555555666665555566666
Q ss_pred CCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCC
Q 038320 415 LSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYS 452 (467)
Q Consensus 415 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~ 452 (467)
+++|++|++++|++++.++...|..+++|+.|++++|+
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence 66666666666666655554356666666666666664
No 17
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.5e-37 Score=324.10 Aligned_cols=371 Identities=22% Similarity=0.231 Sum_probs=222.8
Q ss_pred CCEEEEEcCCCCCCC-----------CcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEE
Q 038320 78 GKVVQLKLRSPEIPD-----------SFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLN 146 (467)
Q Consensus 78 ~~v~~l~l~~~~~~~-----------~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~ 146 (467)
.+++.++++++.+.. .+.+++++|.+++..+..+..+++|++|++++|.+++. .|..++++++|++|+
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 127 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI-KNNPFVKQKNLITLD 127 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CSCTTTTCTTCCEEE
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCcc-ChhHccccCCCCEEE
Confidence 357777777643322 24455555666655455677777777777777777654 446677777777777
Q ss_pred cCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCC----------
Q 038320 147 LSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNM---------- 216 (467)
Q Consensus 147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~---------- 216 (467)
+++|.+++..|..+.++++|++|++++|.++.++...+. ...+++|++|++++|.+++..+.....+..
T Consensus 128 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~ 206 (680)
T 1ziw_A 128 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD-IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206 (680)
T ss_dssp CCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHG-GGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCC
T ss_pred CCCCcccccCchhhcccccCCEEEccCCcccccCHHHhh-ccccccccEEECCCCcccccChhhhhhhhhhhhhhccccc
Confidence 777777766666677777777777777776655443221 224567777777777766654432222211
Q ss_pred --------------CCCCCEEECCCCcCcccCCccccCCCC--CcEEEccCCcCCCCcchhccCCCCCCEEeccCCcccc
Q 038320 217 --------------LPSLSELHLPACGLFEFPPLSVVNFSS--LLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQG 280 (467)
Q Consensus 217 --------------l~~L~~L~l~~n~~~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 280 (467)
.++|++|++++|.+.+..+..+..++. |++|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 207 l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (680)
T 1ziw_A 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286 (680)
T ss_dssp CHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSE
T ss_pred cChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCc
Confidence 245666666666666666666655543 7777777777766666666777777777777777666
Q ss_pred ccchhhhCCCCCCEEeCC---------------------------------CCCCCCCCCcccccCCCCCCEEeccCCcC
Q 038320 281 NIPDAFANMTSLRELDLS---------------------------------ENSLIGGQIPKDLGSLCNLWDLDLSGNDL 327 (467)
Q Consensus 281 ~~~~~l~~l~~L~~L~L~---------------------------------~n~l~~~~~~~~l~~l~~L~~L~l~~n~l 327 (467)
..|..+.++++|++|+++ +|.+ .+..+..+..+++|++|++++|.+
T Consensus 287 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~~ 365 (680)
T 1ziw_A 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI-PGIKSNMFTGLINLKYLSLSNSFT 365 (680)
T ss_dssp ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB-CCCCTTTTTTCTTCCEEECTTCBS
T ss_pred cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc-CCCChhHhccccCCcEEECCCCch
Confidence 555555555555555554 4444 333344445555555555554443
Q ss_pred CCchh--hHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCccccc-ccccCCCCCCEEECcCCcC
Q 038320 328 DGEII--EFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIP-ESIGNLSSLRELYLHNNLM 404 (467)
Q Consensus 328 ~~~~~--~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~Ls~n~l 404 (467)
..... ..+... ..++|+.|++++|++++..|..+..+++|++|++++|.+++.+| ..+..+++|++|++++|++
T Consensus 366 ~~~~l~~~~f~~~---~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l 442 (680)
T 1ziw_A 366 SLRTLTNETFVSL---AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442 (680)
T ss_dssp CCCEECTTTTGGG---TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSE
T ss_pred hhhhcchhhhccc---ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCc
Confidence 21110 000000 11245666666666665556666666666666666666665444 3455555555555555554
Q ss_pred c--------------------------ccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCCC
Q 038320 405 D--------------------------GTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAP 455 (467)
Q Consensus 405 ~--------------------------~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~ 455 (467)
+ +.+|..+..+++|++|++++|++++..+. .|..+++|+.|++++|+++.
T Consensus 443 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~-~~~~l~~L~~L~Ls~N~l~~ 518 (680)
T 1ziw_A 443 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD-MLEGLEKLEILDLQHNNLAR 518 (680)
T ss_dssp EECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCGG
T ss_pred ceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChh-hhccccccCEEeCCCCCccc
Confidence 3 34566667777777777777777765555 67777788888888887653
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.8e-38 Score=336.15 Aligned_cols=330 Identities=20% Similarity=0.213 Sum_probs=280.6
Q ss_pred ccCcccc--CCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCc-CCC-CCCccCCC-------CCcCCeeeccCc
Q 038320 106 EISPSVL--DLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGAS-FAG-NIPPSFGN-------LSSLQILDLNTF 174 (467)
Q Consensus 106 ~~~~~l~--~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~p~~l~~-------l~~L~~L~l~~n 174 (467)
.+|..++ ++++|++|+|++|.+.+. +|..++++++|++|++++|+ +++ .+|..+++ +++|++|++++|
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCS-CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred cCChhhhhccCCCCCEEECcCCCCCcc-ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 5999988 999999999999999887 99999999999999999998 887 78875554 459999999999
Q ss_pred cCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCC-CcEEEccCCc
Q 038320 175 YYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSS-LLFLDLSSND 253 (467)
Q Consensus 175 ~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~ 253 (467)
.++.+|. ...+.++++|+.|++++|.++.. + .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.
T Consensus 559 ~L~~ip~--~~~l~~L~~L~~L~Ls~N~l~~l----p-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 559 NLEEFPA--SASLQKMVKLGLLDCVHNKVRHL----E-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp CCCBCCC--HHHHTTCTTCCEEECTTSCCCBC----C-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC
T ss_pred cCCccCC--hhhhhcCCCCCEEECCCCCcccc----h-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC
Confidence 9997776 01289999999999999999833 2 7888999999999999999 66778999999 9999999999
Q ss_pred CCCCcchhccCCCC--CCEEeccCCccccccchh---hh--CCCCCCEEeCCCCCCCCCCCcccc-cCCCCCCEEeccCC
Q 038320 254 FNSSIPQWLLNISK--LAHLDLSANNLQGNIPDA---FA--NMTSLRELDLSENSLIGGQIPKDL-GSLCNLWDLDLSGN 325 (467)
Q Consensus 254 l~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~~---l~--~l~~L~~L~L~~n~l~~~~~~~~l-~~l~~L~~L~l~~n 325 (467)
++ .+|..+..++. |+.|++++|.+.+.+|.. +. .+++|+.|++++|.+ . .+|..+ ..+++|+.|++++|
T Consensus 631 L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L-~-~lp~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 631 LK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI-Q-KFPTELFATGSPISTIILSNN 707 (876)
T ss_dssp CC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCC-C-SCCHHHHHTTCCCSEEECCSC
T ss_pred CC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcC-C-ccCHHHHccCCCCCEEECCCC
Confidence 98 78888876654 999999999998866532 22 345899999999999 4 566654 58999999999999
Q ss_pred cCCCchhhHHHhhh---cccCCCccEEECcCCCCCcCCCcccc--CCCCCCEEEccCCcCcccccccccCCCCCCEEECc
Q 038320 326 DLDGEIIEFVDRLS---KCANSSLESLDLGQNNLGGFLPNSLG--QLENLKILQLWGNLFRGSIPESIGNLSSLRELYLH 400 (467)
Q Consensus 326 ~l~~~~~~~l~~~~---~~~~~~L~~L~L~~n~i~~~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls 400 (467)
.++ .+|..+.... ...+++|+.|++++|+++ .+|..+. .+++|+.|++++|.+++ +|..+..+++|+.|+|+
T Consensus 708 ~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls 784 (876)
T 4ecn_A 708 LMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIR 784 (876)
T ss_dssp CCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECC
T ss_pred cCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECC
Confidence 998 4444332211 011227999999999999 6788887 99999999999999997 89899999999999997
Q ss_pred C------CcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCC
Q 038320 401 N------NLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLA 454 (467)
Q Consensus 401 ~------n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~ 454 (467)
+ |.+.+.+|..+..+++|+.|++++|++ +.+|. .+. ++|+.|+|++|++.
T Consensus 785 ~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~-~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDE-KLT--PQLYILDIADNPNI 840 (876)
T ss_dssp CCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS-CCC--SSSCEEECCSCTTC
T ss_pred CCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCH-hhc--CCCCEEECCCCCCC
Confidence 6 788889999999999999999999999 78888 443 79999999999886
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=334.40 Aligned_cols=315 Identities=22% Similarity=0.212 Sum_probs=219.3
Q ss_pred CCcccEEecCCCCCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEE
Q 038320 66 CKWEGVICDNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYL 145 (467)
Q Consensus 66 c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L 145 (467)
|.|.+|.+ ...+++.+++++ |.+++..+..+.++++|++|+|++|...+...|..++++++|++|
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~-------------N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L 78 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSF-------------NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEES-------------CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEE
T ss_pred CCCCCCCC--CCCCcCEEECCC-------------CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEE
Confidence 45666665 456788888888 777777777888888888888888865544236778888888888
Q ss_pred EcCCCcCCCCCCccCCCCCcCCeeeccCccCCCC-CCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEE
Q 038320 146 NLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSL-ESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELH 224 (467)
Q Consensus 146 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l-~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~ 224 (467)
++++|.+.+..|..|.++++|++|++++|.++.. +.. ..+.++++|++|++++|.+++..+ ...+.++++|++|+
T Consensus 79 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~~~L~~L~~L~Ls~N~l~~~~~--~~~~~~L~~L~~L~ 154 (844)
T 3j0a_A 79 DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD--GYFRNLKALTRLDLSKNQIRSLYL--HPSFGKLNSLKSID 154 (844)
T ss_dssp ECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTT--CCCSSCSSCCEEEEESCCCCCCCC--CGGGGTCSSCCEEE
T ss_pred ECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccC--ccccccCCCCEEECCCCccccccc--chhHhhCCCCCEEE
Confidence 8888888877788888888888888888877642 221 126778888888888888876542 13567788888888
Q ss_pred CCCCcCcccCCccccCC--CCCcEEEccCCcCCCCcchhccCCCC------CCEEeccCCccccccchhhhC--------
Q 038320 225 LPACGLFEFPPLSVVNF--SSLLFLDLSSNDFNSSIPQWLLNISK------LAHLDLSANNLQGNIPDAFAN-------- 288 (467)
Q Consensus 225 l~~n~~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~------L~~L~l~~n~l~~~~~~~l~~-------- 288 (467)
+++|.+.+..+..+..+ ++|+.|++++|.+.+..|..+..+++ |+.|++++|.+.+..+..+..
T Consensus 155 Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~ 234 (844)
T 3j0a_A 155 FSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234 (844)
T ss_dssp EESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBS
T ss_pred CCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccc
Confidence 88888877777666665 67777777777777666655555444 777777777655443332221
Q ss_pred ------------------------------CCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhh
Q 038320 289 ------------------------------MTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRL 338 (467)
Q Consensus 289 ------------------------------l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~ 338 (467)
.++|+.|++++|.+ .+..+..+..+++|+.|++++|.+++..+..+..+
T Consensus 235 ~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 313 (844)
T 3j0a_A 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV-FSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL 313 (844)
T ss_dssp EEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCC-CEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC
T ss_pred ceecccccccccccccccCCCChhhhhccccCCccEEECCCCcc-cccChhhhhcCCCCCEEECCCCcCCCCChHHhcCC
Confidence 25677777777776 55556666777777777777777776666555554
Q ss_pred hcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCc
Q 038320 339 SKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMD 405 (467)
Q Consensus 339 ~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~ 405 (467)
. +|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus 314 ~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 314 D-----NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp S-----SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred C-----CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 4 6777777777777666667777777777777777776555556666777777777776665
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.4e-36 Score=304.15 Aligned_cols=333 Identities=27% Similarity=0.282 Sum_probs=283.3
Q ss_pred CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCC-CccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCC
Q 038320 115 KHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNI-PPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSL 193 (467)
Q Consensus 115 ~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L 193 (467)
++|++|+|++|.+++. .|..++++++|++|++++|.+.+.+ +..|.++++|++|++++|.++.+.+.. +.++++|
T Consensus 30 ~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L 105 (455)
T 3v47_A 30 AHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA---FNGLANL 105 (455)
T ss_dssp TTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTT---TTTCTTC
T ss_pred CccCEEEecCCccCcC-ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhh---ccCcccC
Confidence 7899999999999875 6889999999999999999997655 567999999999999999998775443 7889999
Q ss_pred CEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCcc-ccCCCCCcEEEccCCcCCCCcchhccCC--CCCCE
Q 038320 194 QYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLS-VVNFSSLLFLDLSSNDFNSSIPQWLLNI--SKLAH 270 (467)
Q Consensus 194 ~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~ 270 (467)
++|++++|.+++..+. ...+..+++|++|++++|.+.+..|.. +.++++|++|++++|.+++..+..+..+ .+|+.
T Consensus 106 ~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLS-GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp CEEECTTSCCBTHHHH-SSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred CEEeCCCCCCCccccC-cccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence 9999999998864311 123788999999999999999987765 8899999999999999998888877765 78999
Q ss_pred EeccCCccccccchh--------hhCCCCCCEEeCCCCCCCCCCCcccccC---CCCCCEEeccCCcCCCchh-------
Q 038320 271 LDLSANNLQGNIPDA--------FANMTSLRELDLSENSLIGGQIPKDLGS---LCNLWDLDLSGNDLDGEII------- 332 (467)
Q Consensus 271 L~l~~n~l~~~~~~~--------l~~l~~L~~L~L~~n~l~~~~~~~~l~~---l~~L~~L~l~~n~l~~~~~------- 332 (467)
|++++|.+.+..+.. +..+++|++|++++|.+ .+..+..+.. .++|+.|++++|...+...
T Consensus 185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 263 (455)
T 3v47_A 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF-KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263 (455)
T ss_dssp EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCC-CHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCC
T ss_pred cccccCcccccchhhccccccccccccceeeeEecCCCcc-cccchhhhhccccccceeeEeeccccccccccchhhhcc
Confidence 999999998654433 23568899999999998 6666665543 3789999999886554321
Q ss_pred ---hHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccCh
Q 038320 333 ---EFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIP 409 (467)
Q Consensus 333 ---~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p 409 (467)
..+.. ...++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|
T Consensus 264 ~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 340 (455)
T 3v47_A 264 PDNFTFKG---LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340 (455)
T ss_dssp CCTTTTGG---GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred Cccccccc---ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh
Confidence 11111 123489999999999999999999999999999999999998888899999999999999999998889
Q ss_pred hhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCCCCc
Q 038320 410 KSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRL 457 (467)
Q Consensus 410 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~ 457 (467)
..+..+++|++|++++|++++..+. .|..+++|+.|++++|+|+..+
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~ 387 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHIRALGDQ-SFLGLPNLKELALDTNQLKSVP 387 (455)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCSCCC
T ss_pred hHhcCcccCCEEECCCCcccccChh-hccccccccEEECCCCccccCC
Confidence 9999999999999999999988887 7999999999999999888644
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.3e-37 Score=308.14 Aligned_cols=313 Identities=20% Similarity=0.180 Sum_probs=271.2
Q ss_pred ccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChh
Q 038320 106 EISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVE 185 (467)
Q Consensus 106 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~ 185 (467)
.+|..+ .+++++|+|++|++++. .+..|.++++|++|++++|.+++..|..|.++++|++|++++|.++.++...
T Consensus 25 ~ip~~~--~~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-- 99 (477)
T 2id5_A 25 AVPEGI--PTETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV-- 99 (477)
T ss_dssp SCCSCC--CTTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTS--
T ss_pred cCCCCC--CCCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccc--
Confidence 345444 35899999999999875 6788999999999999999999888899999999999999999999888754
Q ss_pred hcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCC
Q 038320 186 WLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNI 265 (467)
Q Consensus 186 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 265 (467)
+.++++|++|++++|.+....+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.++
T Consensus 100 -~~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 175 (477)
T 2id5_A 100 -FTGLSNLTKLDISENKIVILLD---YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL 175 (477)
T ss_dssp -STTCTTCCEEECTTSCCCEECT---TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTC
T ss_pred -ccCCCCCCEEECCCCccccCCh---hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhccc
Confidence 6789999999999999987753 367889999999999999999888889999999999999999987777788899
Q ss_pred CCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCC
Q 038320 266 SKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSS 345 (467)
Q Consensus 266 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~ 345 (467)
++|+.|++++|.+.+..+..+..+++|+.|++++|.. .+.++.......+|+.|++++|.+++..+..+..++ +
T Consensus 176 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-----~ 249 (477)
T 2id5_A 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY-LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV-----Y 249 (477)
T ss_dssp TTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT-CCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT-----T
T ss_pred CCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc-ccccCcccccCccccEEECcCCcccccCHHHhcCcc-----c
Confidence 9999999999999887777889999999999999887 566666666667899999999999876666666665 8
Q ss_pred ccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcC
Q 038320 346 LESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISG 425 (467)
Q Consensus 346 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~ 425 (467)
|+.|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|++|++++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccC
Confidence 99999999999888778888999999999999999988888899999999999999999877777788899999999999
Q ss_pred CCCcccCC
Q 038320 426 NPWIGLVT 433 (467)
Q Consensus 426 n~~~~~~~ 433 (467)
|++.....
T Consensus 330 N~l~c~c~ 337 (477)
T 2id5_A 330 NPLACDCR 337 (477)
T ss_dssp SCEECSGG
T ss_pred CCccCccc
Confidence 99876544
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.6e-36 Score=304.06 Aligned_cols=319 Identities=20% Similarity=0.183 Sum_probs=266.5
Q ss_pred ccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCC
Q 038320 100 TYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSL 179 (467)
Q Consensus 100 ~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l 179 (467)
+|.+++..+..+.++++|++|+|++|.+++. .|..+.++++|++|++++|.+++..+..|.++++|++|++++|.+..+
T Consensus 41 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 119 (477)
T 2id5_A 41 KNRIKTLNQDEFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL 119 (477)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE
T ss_pred CCccceECHhHccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC
Confidence 3888888888999999999999999999875 688899999999999999999865556789999999999999998876
Q ss_pred CCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcc
Q 038320 180 ESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIP 259 (467)
Q Consensus 180 ~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 259 (467)
.... +.++++|++|++++|.+....+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus 120 ~~~~---~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~ 193 (477)
T 2id5_A 120 LDYM---FQDLYNLKSLEVGDNDLVYISH---RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193 (477)
T ss_dssp CTTT---TTTCTTCCEEEECCTTCCEECT---TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT
T ss_pred ChhH---ccccccCCEEECCCCccceeCh---hhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh
Confidence 5543 7889999999999999887653 367889999999999999998888888999999999999999988777
Q ss_pred hhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhh
Q 038320 260 QWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLS 339 (467)
Q Consensus 260 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~ 339 (467)
..+..+++|+.|++++|...+.++.......+|+.|++++|.+ .+..+..+..+++|+.|++++|.+++..+..+..+.
T Consensus 194 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (477)
T 2id5_A 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272 (477)
T ss_dssp TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC-CSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT
T ss_pred hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcc-cccCHHHhcCccccCeeECCCCcCCccChhhccccc
Confidence 7888999999999999988888887777777999999999998 444445788999999999999999877776666655
Q ss_pred cccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChh-hhcCCCCC
Q 038320 340 KCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPK-SLGKLSHL 418 (467)
Q Consensus 340 ~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~-~l~~l~~L 418 (467)
+|++|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+...-.. ++ ...+
T Consensus 273 -----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~--~~~~ 345 (477)
T 2id5_A 273 -----RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWV--FRRR 345 (477)
T ss_dssp -----TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHH--HTTT
T ss_pred -----cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhH--Hhhh
Confidence 899999999999988889999999999999999999977777788999999999999998754321 11 1223
Q ss_pred CEEeCcCCCCcccCC
Q 038320 419 VVLDISGNPWIGLVT 433 (467)
Q Consensus 419 ~~L~l~~n~~~~~~~ 433 (467)
..+.+.++......|
T Consensus 346 ~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 346 WRLNFNRQQPTCATP 360 (477)
T ss_dssp TSSCCTTCCCBEEES
T ss_pred hccccCccCceeCCc
Confidence 334455555443333
No 23
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.2e-37 Score=330.12 Aligned_cols=355 Identities=25% Similarity=0.226 Sum_probs=229.8
Q ss_pred CCEEEEEcCCCCCCCCcCCCCccccccccc-CccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCC
Q 038320 78 GKVVQLKLRSPEIPDSFTDNGTTYQLEGEI-SPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNI 156 (467)
Q Consensus 78 ~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~-~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 156 (467)
..++.|++++ |...+.+ |..+.++++|++|+|++|.+++. .|..++++++|++|++++|.+++.+
T Consensus 48 ~~L~~LdLs~-------------n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~ 113 (844)
T 3j0a_A 48 EQLQLLELGS-------------QYTPLTIDKEAFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAV 113 (844)
T ss_dssp CSCSEEEECT-------------TCCCCEECTTTTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSSCC
T ss_pred ccCeEEeCCC-------------CCCccccCHHHhcCCCCCCEEECCCCcCccc-CHhHccCCcccCEeeCcCCCCCccc
Confidence 3566677766 5555555 56677788888888888777765 6777777888888888888777655
Q ss_pred Ccc--CCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhh---------------------
Q 038320 157 PPS--FGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQA--------------------- 213 (467)
Q Consensus 157 p~~--l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~--------------------- 213 (467)
|.. +.++++|++|++++|.+..++.. ..+.++++|++|++++|.+++..+.....
T Consensus 114 ~~~~~~~~L~~L~~L~Ls~N~l~~~~~~--~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~ 191 (844)
T 3j0a_A 114 LKDGYFRNLKALTRLDLSKNQIRSLYLH--PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191 (844)
T ss_dssp STTCCCSSCSSCCEEEEESCCCCCCCCC--GGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCC
T ss_pred ccCccccccCCCCEEECCCCcccccccc--hhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccc
Confidence 554 77778888888887777665432 12677777777777777776654332211
Q ss_pred --cCCCC------CCCEEECCCCcCcccCCccccC--------------------------------------CCCCcEE
Q 038320 214 --TNMLP------SLSELHLPACGLFEFPPLSVVN--------------------------------------FSSLLFL 247 (467)
Q Consensus 214 --~~~l~------~L~~L~l~~n~~~~~~~~~l~~--------------------------------------l~~L~~L 247 (467)
+..++ .|+.|++++|.+.+..+..+.. .++|+.|
T Consensus 192 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L 271 (844)
T 3j0a_A 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL 271 (844)
T ss_dssp CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEE
T ss_pred cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEE
Confidence 11222 2777777777665443322211 2578888
Q ss_pred EccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcC
Q 038320 248 DLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDL 327 (467)
Q Consensus 248 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l 327 (467)
++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+ ++..+..+..+++|+.|++++|.+
T Consensus 272 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~i 350 (844)
T 3j0a_A 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL-GELYSSNFYGLPKVAYIDLQKNHI 350 (844)
T ss_dssp ECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC-SCCCSCSCSSCTTCCEEECCSCCC
T ss_pred ECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC-CccCHHHhcCCCCCCEEECCCCCC
Confidence 8888888777777788888888888888888877788888888888888888888 666677888888888888888888
Q ss_pred CCchhhHHHhhhcccCCCccEEECcCCCCCcCC------------------C----------------------ccccCC
Q 038320 328 DGEIIEFVDRLSKCANSSLESLDLGQNNLGGFL------------------P----------------------NSLGQL 367 (467)
Q Consensus 328 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~------------------~----------------------~~l~~l 367 (467)
.+..+..+..++ +|++|++++|.+++.. | ..+..+
T Consensus 351 ~~~~~~~~~~l~-----~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l 425 (844)
T 3j0a_A 351 AIIQDQTFKFLE-----KLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRV 425 (844)
T ss_dssp CCCCSSCSCSCC-----CCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTC
T ss_pred CccChhhhcCCC-----CCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcC
Confidence 776665554444 6777777777665321 0 012356
Q ss_pred CCCCEEEccCCcCcccccc-cccCCCCCCEEECcCCcCc-----ccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCC
Q 038320 368 ENLKILQLWGNLFRGSIPE-SIGNLSSLRELYLHNNLMD-----GTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLK 441 (467)
Q Consensus 368 ~~L~~L~l~~n~l~~~~~~-~l~~~~~L~~L~Ls~n~l~-----~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 441 (467)
++|++|++++|.+++..+. .+..+++|+.|++++|.++ +..+..+..+++|++|+|++|++++..+. .|..++
T Consensus 426 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~ 504 (844)
T 3j0a_A 426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG-VFSHLT 504 (844)
T ss_dssp TTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTT-SSSSCC
T ss_pred CccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChh-Hccchh
Confidence 6677777777766643222 1223444444444444443 22233344555555566666555554444 455666
Q ss_pred CCCEEeccCCCCCC
Q 038320 442 NLKELHIAKYSLAP 455 (467)
Q Consensus 442 ~L~~l~l~~n~i~~ 455 (467)
+|+.|+|++|+|+.
T Consensus 505 ~L~~L~Ls~N~l~~ 518 (844)
T 3j0a_A 505 ALRGLSLNSNRLTV 518 (844)
T ss_dssp SCSEEEEESCCCSS
T ss_pred hhheeECCCCCCCc
Confidence 66666666665553
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.8e-36 Score=314.53 Aligned_cols=351 Identities=26% Similarity=0.213 Sum_probs=249.2
Q ss_pred CEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCc
Q 038320 79 KVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPP 158 (467)
Q Consensus 79 ~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~ 158 (467)
.++.|+|++ |.+++..+.+|.++++|++|+|++|++++. .+..|.++++|++|+|++|++++..+.
T Consensus 53 ~~~~LdLs~-------------N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~ 118 (635)
T 4g8a_A 53 STKNLDLSF-------------NPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALG 118 (635)
T ss_dssp TCCEEECTT-------------SCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGG
T ss_pred CCCEEEeeC-------------CCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHH
Confidence 466666666 888877777888888888888888888754 556788888888888888888765556
Q ss_pred cCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccc
Q 038320 159 SFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSV 238 (467)
Q Consensus 159 ~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l 238 (467)
.|.++++|++|++++|.++.++... ++++++|++|++++|.+..... +..+..+++|++|++++|++.+..+..+
T Consensus 119 ~f~~L~~L~~L~Ls~N~l~~l~~~~---~~~L~~L~~L~Ls~N~l~~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~l 193 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETNLASLENFP---IGHLKTLKELNVAHNLIQSFKL--PEYFSNLTNLEHLDLSSNKIQSIYCTDL 193 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCCSTTCC---CTTCTTCCEEECCSSCCCCCCC--CGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred HhcCCCCCCEEECCCCcCCCCChhh---hhcCcccCeeccccCccccCCC--chhhccchhhhhhcccCccccccccccc
Confidence 6788888888888888888777654 6778888888888888765431 2355667788888888877655443322
Q ss_pred cCC-----------------------------------------------------------------------------
Q 038320 239 VNF----------------------------------------------------------------------------- 241 (467)
Q Consensus 239 ~~l----------------------------------------------------------------------------- 241 (467)
..+
T Consensus 194 ~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~ 273 (635)
T 4g8a_A 194 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 273 (635)
T ss_dssp HHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTT
T ss_pred cchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccc
Confidence 211
Q ss_pred ------------------------------------------------------CCCcEEEccCCcCCCCcc--------
Q 038320 242 ------------------------------------------------------SSLLFLDLSSNDFNSSIP-------- 259 (467)
Q Consensus 242 ------------------------------------------------------~~L~~L~l~~n~l~~~~~-------- 259 (467)
..++.|++.+|.+.+..+
T Consensus 274 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~ 353 (635)
T 4g8a_A 274 ALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR 353 (635)
T ss_dssp TTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCE
T ss_pred ccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhh
Confidence 122223332222211100
Q ss_pred -----------hhccCCCCCCEEeccCCcccc--ccchhhhCCCCCCEEeCCCCC-----------------------CC
Q 038320 260 -----------QWLLNISKLAHLDLSANNLQG--NIPDAFANMTSLRELDLSENS-----------------------LI 303 (467)
Q Consensus 260 -----------~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~-----------------------l~ 303 (467)
.....+++|+.+++++|.+.. ..+..+..+.+|+.+++..+. ..
T Consensus 354 l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 433 (635)
T 4g8a_A 354 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 433 (635)
T ss_dssp EEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEE
T ss_pred cccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccc
Confidence 011235677788888777642 234444455555555555443 31
Q ss_pred CCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCC-cCCCccccCCCCCCEEEccCCcCcc
Q 038320 304 GGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLG-GFLPNSLGQLENLKILQLWGNLFRG 382 (467)
Q Consensus 304 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~-~~~~~~l~~l~~L~~L~l~~n~l~~ 382 (467)
.......+..+++++.++++.|.+.+..+..+.... +++.|++++|.+. +..|..+..+++|++|++++|++++
T Consensus 434 ~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~-----~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~ 508 (635)
T 4g8a_A 434 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-----SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 508 (635)
T ss_dssp STTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT-----TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred ccccccccccccccccccccccccccccccccccch-----hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC
Confidence 222233456667777777777777666655555544 8999999998744 4567888999999999999999998
Q ss_pred cccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCC-CCCCEEeccCCCCC
Q 038320 383 SIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKL-KNLKELHIAKYSLA 454 (467)
Q Consensus 383 ~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l-~~L~~l~l~~n~i~ 454 (467)
..|..|.++++|++|+|++|++++..|..+..+++|++|++++|++++..|. .|..+ ++|+.|+|++|++.
T Consensus 509 l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 509 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ-ELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS-CTTCCCTTCCEEECTTCCBC
T ss_pred cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH-HHHhhhCcCCEEEeeCCCCc
Confidence 8888899999999999999999988888899999999999999999988887 78777 57999999999665
No 25
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.7e-35 Score=284.21 Aligned_cols=307 Identities=24% Similarity=0.354 Sum_probs=246.8
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCC
Q 038320 111 VLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRL 190 (467)
Q Consensus 111 l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l 190 (467)
+..+++|++|+++++.+.. ++ .+..+++|++|++++|.+++ ++. +.++++|++|++++|.++.++ .+..+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~~-----~~~~l 109 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDIS-----ALQNL 109 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG-----GGTTC
T ss_pred chhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCch-----HHcCC
Confidence 3467788888888888763 44 36778888888888888873 444 788888888888888877653 27888
Q ss_pred CCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCE
Q 038320 191 SSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAH 270 (467)
Q Consensus 191 ~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 270 (467)
++|++|++++|.+.... .+..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|+.
T Consensus 110 ~~L~~L~l~~n~i~~~~-----~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~ 181 (347)
T 4fmz_A 110 TNLRELYLNEDNISDIS-----PLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181 (347)
T ss_dssp TTCSEEECTTSCCCCCG-----GGTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred CcCCEEECcCCcccCch-----hhccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCE
Confidence 88888888888887654 37788889999998886655544 37888999999999998875443 778899999
Q ss_pred EeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEE
Q 038320 271 LDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLD 350 (467)
Q Consensus 271 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~ 350 (467)
|++++|.+.+..+ +..+++|+.+++++|.+ .+..+ +..+++|++|++++|.+++..+ +..+ ++|++|+
T Consensus 182 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l-~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l-----~~L~~L~ 249 (347)
T 4fmz_A 182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQI-TDITP--VANMTRLNSLKIGNNKITDLSP--LANL-----SQLTWLE 249 (347)
T ss_dssp EECTTSCCCCCGG--GGGCTTCCEEECCSSCC-CCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTC-----TTCCEEE
T ss_pred EEccCCccccccc--ccCCCccceeecccCCC-CCCch--hhcCCcCCEEEccCCccCCCcc--hhcC-----CCCCEEE
Confidence 9999998875433 78899999999999988 43332 7788999999999999887554 4444 3899999
Q ss_pred CcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcc
Q 038320 351 LGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIG 430 (467)
Q Consensus 351 L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~ 430 (467)
+++|.+++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|++++..|..+..+++|++|++++|++++
T Consensus 250 l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 250 IGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred CCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence 999998864 5688999999999999999854 457889999999999999998899999999999999999999988
Q ss_pred cCChhhhCCCCCCCEEeccCCCCC
Q 038320 431 LVTEVHFSKLKNLKELHIAKYSLA 454 (467)
Q Consensus 431 ~~~~~~~~~l~~L~~l~l~~n~i~ 454 (467)
..| +..+++|+.|++++|+|+
T Consensus 326 ~~~---~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 326 IRP---LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CGG---GGGCTTCSEESSSCC---
T ss_pred ccC---hhhhhccceeehhhhccc
Confidence 765 567899999999999775
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7e-36 Score=293.03 Aligned_cols=309 Identities=22% Similarity=0.229 Sum_probs=218.8
Q ss_pred CCCCCCEEeCCCCCCCCCCCCc-ccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCC
Q 038320 113 DLKHLNYLDLSLNNFRGSRIPN-FLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLS 191 (467)
Q Consensus 113 ~l~~L~~L~L~~n~i~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~ 191 (467)
.++++++|+++++.++. +|. .+..+++|++|++++|.+.+..+..+.++++|++|++++|.++.+++.. +.+++
T Consensus 43 ~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV---FQNVP 117 (390)
T ss_dssp GGCCCSEEEEESCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCT
T ss_pred ccCCceEEEecCCchhh--CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHH---hcCCC
Confidence 45677777777777663 443 4566777777777777777656667777777777777777777665543 56777
Q ss_pred CCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEE
Q 038320 192 SLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHL 271 (467)
Q Consensus 192 ~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 271 (467)
+|++|++++|.++.... ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|+.|
T Consensus 118 ~L~~L~L~~n~l~~l~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L 191 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPR---GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHA 191 (390)
T ss_dssp TCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEE
T ss_pred CCCEEECCCCccCcCCH---HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---cccccccccee
Confidence 77788887777775542 2356677788888888887777777777778888888888877643 24556778888
Q ss_pred eccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEEC
Q 038320 272 DLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDL 351 (467)
Q Consensus 272 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L 351 (467)
++++|.+++. ...++|+.|++++|.+ . .++. ...++|+.|++++|.+++. ..+..++ +|++|++
T Consensus 192 ~l~~n~l~~~-----~~~~~L~~L~l~~n~l-~-~~~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~-----~L~~L~L 255 (390)
T 3o6n_A 192 NVSYNLLSTL-----AIPIAVEELDASHNSI-N-VVRG--PVNVELTILKLQHNNLTDT--AWLLNYP-----GLVEVDL 255 (390)
T ss_dssp ECCSSCCSEE-----ECCSSCSEEECCSSCC-C-EEEC--CCCSSCCEEECCSSCCCCC--GGGGGCT-----TCSEEEC
T ss_pred eccccccccc-----CCCCcceEEECCCCee-e-eccc--cccccccEEECCCCCCccc--HHHcCCC-----CccEEEC
Confidence 8887776632 3345778888888877 2 2232 2346788888888887763 3344443 7888888
Q ss_pred cCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCccc
Q 038320 352 GQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGL 431 (467)
Q Consensus 352 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~ 431 (467)
++|.+++..|..+..+++|++|++++|.+++ +|..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++.
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 256 SYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL 333 (390)
T ss_dssp CSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred CCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee
Confidence 8888887777778888888888888888774 5555667788888888888876 5666677778888888888887654
Q ss_pred CChhhhCCCCCCCEEeccCCCCC
Q 038320 432 VTEVHFSKLKNLKELHIAKYSLA 454 (467)
Q Consensus 432 ~~~~~~~~l~~L~~l~l~~n~i~ 454 (467)
. +..+++|+.|++++|++.
T Consensus 334 ~----~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 334 K----LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp C----CCTTCCCSEEECCSSCEE
T ss_pred C----chhhccCCEEEcCCCCcc
Confidence 2 456778888888888553
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.9e-35 Score=293.72 Aligned_cols=312 Identities=25% Similarity=0.381 Sum_probs=250.9
Q ss_pred cccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCC
Q 038320 101 YQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLE 180 (467)
Q Consensus 101 ~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~ 180 (467)
+.+++..+ +..+++|++|++++|.+.+. +. ++++++|++|++++|.+.+ ++. +.++++|++|++++|.+..++
T Consensus 78 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~ 150 (466)
T 1o6v_A 78 NQLTDITP--LKNLTKLVDILMNNNQIADI--TP-LANLTNLTGLTLFNNQITD-IDP-LKNLTNLNRLELSSNTISDIS 150 (466)
T ss_dssp SCCCCCGG--GTTCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCSEEEEEEEEECCCG
T ss_pred CccCCchh--hhccccCCEEECCCCccccC--hh-hcCCCCCCEEECCCCCCCC-ChH-HcCCCCCCEEECCCCccCCCh
Confidence 66665543 77788888888888877743 33 7778888888888887774 333 777888888888888776653
Q ss_pred CCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcch
Q 038320 181 SDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQ 260 (467)
Q Consensus 181 ~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 260 (467)
. +..+++|++|+++ +.+... ..+..+++|++|++++|.+.+.. .+..+++|++|++++|.+.+..+
T Consensus 151 ~-----~~~l~~L~~L~l~-~~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~- 216 (466)
T 1o6v_A 151 A-----LSGLTSLQQLSFG-NQVTDL-----KPLANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDITP- 216 (466)
T ss_dssp G-----GTTCTTCSEEEEE-ESCCCC-----GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG-
T ss_pred h-----hccCCcccEeecC-CcccCc-----hhhccCCCCCEEECcCCcCCCCh--hhccCCCCCEEEecCCccccccc-
Confidence 2 6778888888875 344333 24788999999999999987753 47889999999999999987655
Q ss_pred hccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhc
Q 038320 261 WLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSK 340 (467)
Q Consensus 261 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~ 340 (467)
+..+++|+.|++++|.+++. ..+..+++|++|++++|.+ .+..+ +..+++|+.|++++|.+++..+ +..+
T Consensus 217 -~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l-~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l-- 286 (466)
T 1o6v_A 217 -LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQI-SNLAP--LSGLTKLTELKLGANQISNISP--LAGL-- 286 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC-CCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTC--
T ss_pred -ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCcc-ccchh--hhcCCCCCEEECCCCccCcccc--ccCC--
Confidence 67789999999999998853 4578899999999999998 44433 7889999999999999987654 4444
Q ss_pred ccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCE
Q 038320 341 CANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVV 420 (467)
Q Consensus 341 ~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 420 (467)
++|++|++++|++++..+ +..+++|++|++++|.+++..| +..+++|++|++++|++++. ..+..+++|+.
T Consensus 287 ---~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 357 (466)
T 1o6v_A 287 ---TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINW 357 (466)
T ss_dssp ---TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCE
T ss_pred ---CccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCE
Confidence 489999999999987644 7889999999999999997665 67899999999999999865 47889999999
Q ss_pred EeCcCCCCcccCChhhhCCCCCCCEEeccCCCCCC
Q 038320 421 LDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAP 455 (467)
Q Consensus 421 L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~ 455 (467)
|++++|++++..| +..+++|+.|++++|+++.
T Consensus 358 L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 358 LSAGHNQISDLTP---LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp EECCSSCCCBCGG---GTTCTTCCEEECCCEEEEC
T ss_pred EeCCCCccCccch---hhcCCCCCEEeccCCcccC
Confidence 9999999988776 6789999999999997765
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.5e-36 Score=309.18 Aligned_cols=335 Identities=27% Similarity=0.235 Sum_probs=246.5
Q ss_pred CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCC
Q 038320 115 KHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQ 194 (467)
Q Consensus 115 ~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~ 194 (467)
+++++|++++|.+++. .+..+.++++|++|++++|.+++..|..|.++++|++|++++|.++.+++.. +.++++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~ 103 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA---FSGLSSLQ 103 (570)
T ss_dssp SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT---TTTCTTCC
T ss_pred ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhh---hcCccccc
Confidence 4799999999999875 6678999999999999999999777888999999999999999998877554 78999999
Q ss_pred EEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCccc-CCccccCCCCCcEEEccCCcCCCCcchhccCCCCC----C
Q 038320 195 YLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEF-PPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKL----A 269 (467)
Q Consensus 195 ~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L----~ 269 (467)
+|++++|.++..... .+..+++|++|++++|.+.+. .|..+.++++|++|++++|.+++..+..+..+++| +
T Consensus 104 ~L~L~~n~l~~l~~~---~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~ 180 (570)
T 2z63_A 104 KLVAVETNLASLENF---PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (570)
T ss_dssp EEECTTSCCCCSTTC---SCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCC
T ss_pred cccccccccccCCCc---cccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhh
Confidence 999999999887632 478999999999999999884 58889999999999999998876555444444443 3
Q ss_pred EEeccCCcccccc-------------------------------------------------------------------
Q 038320 270 HLDLSANNLQGNI------------------------------------------------------------------- 282 (467)
Q Consensus 270 ~L~l~~n~l~~~~------------------------------------------------------------------- 282 (467)
.+++++|.+.+..
T Consensus 181 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 260 (570)
T 2z63_A 181 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred hcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence 4444444332211
Q ss_pred --------------chhhhCCCCCCEEeCCCCCCCC--------------------CCCccc------------------
Q 038320 283 --------------PDAFANMTSLRELDLSENSLIG--------------------GQIPKD------------------ 310 (467)
Q Consensus 283 --------------~~~l~~l~~L~~L~L~~n~l~~--------------------~~~~~~------------------ 310 (467)
+..+..+++|+.|++++|.+.. ..+|..
T Consensus 261 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~ 340 (570)
T 2z63_A 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340 (570)
T ss_dssp EEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCB
T ss_pred hhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccc
Confidence 1122223333333333333200 011110
Q ss_pred --ccCCCCCCEEeccCCcCCCch--hhHHHhhh------------------cccCCCccEEECcCCCCCcCCC-ccccCC
Q 038320 311 --LGSLCNLWDLDLSGNDLDGEI--IEFVDRLS------------------KCANSSLESLDLGQNNLGGFLP-NSLGQL 367 (467)
Q Consensus 311 --l~~l~~L~~L~l~~n~l~~~~--~~~l~~~~------------------~~~~~~L~~L~L~~n~i~~~~~-~~l~~l 367 (467)
...+++|+.|++++|.+++.. +..+..++ ...+++|++|++++|.+++..+ ..+..+
T Consensus 341 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 420 (570)
T 2z63_A 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420 (570)
T ss_dssp CCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTC
T ss_pred cccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcC
Confidence 034566777777777666443 33333322 1123467777777777766544 467788
Q ss_pred CCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCc-ccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEE
Q 038320 368 ENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMD-GTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKEL 446 (467)
Q Consensus 368 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l 446 (467)
++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|++|++++|++++..|. .|..+++|+.|
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L 499 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLSSLQVL 499 (570)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEE
T ss_pred CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh-hhhcccCCCEE
Confidence 88888888888888878888888899999999999887 56888888899999999999998887777 78889999999
Q ss_pred eccCCCCCCCc
Q 038320 447 HIAKYSLAPRL 457 (467)
Q Consensus 447 ~l~~n~i~~~~ 457 (467)
++++|+++..+
T Consensus 500 ~l~~n~l~~~~ 510 (570)
T 2z63_A 500 NMASNQLKSVP 510 (570)
T ss_dssp ECCSSCCSCCC
T ss_pred eCCCCcCCCCC
Confidence 99999776543
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9.7e-35 Score=291.55 Aligned_cols=325 Identities=27% Similarity=0.355 Sum_probs=275.4
Q ss_pred CCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCC
Q 038320 78 GKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIP 157 (467)
Q Consensus 78 ~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 157 (467)
.+++.+++.+ +.+.. +| .+..+++|++|++++|.+++. +. +.++++|++|++++|.+.+..
T Consensus 46 ~~l~~L~l~~-------------~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~~~- 106 (466)
T 1o6v_A 46 DQVTTLQADR-------------LGIKS-ID-GVEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQIADIT- 106 (466)
T ss_dssp HTCCEEECCS-------------SCCCC-CT-TGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCCG-
T ss_pred ccccEEecCC-------------CCCcc-Cc-chhhhcCCCEEECCCCccCCc--hh-hhccccCCEEECCCCccccCh-
Confidence 4688888887 44443 33 478899999999999999854 44 899999999999999998544
Q ss_pred ccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCcc
Q 038320 158 PSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLS 237 (467)
Q Consensus 158 ~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 237 (467)
. +.++++|++|++++|.++.++. +.++++|++|++++|.+.+.. .+..+++|++|+++ +.+.+.. .
T Consensus 107 ~-~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~~-----~~~~l~~L~~L~l~-~~~~~~~--~ 172 (466)
T 1o6v_A 107 P-LANLTNLTGLTLFNNQITDIDP-----LKNLTNLNRLELSSNTISDIS-----ALSGLTSLQQLSFG-NQVTDLK--P 172 (466)
T ss_dssp G-GTTCTTCCEEECCSSCCCCCGG-----GTTCTTCSEEEEEEEEECCCG-----GGTTCTTCSEEEEE-ESCCCCG--G
T ss_pred h-hcCCCCCCEEECCCCCCCCChH-----HcCCCCCCEEECCCCccCCCh-----hhccCCcccEeecC-CcccCch--h
Confidence 4 8999999999999999887653 789999999999999988753 57889999999996 5555443 3
Q ss_pred ccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCC
Q 038320 238 VVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNL 317 (467)
Q Consensus 238 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L 317 (467)
+.++++|++|++++|.+++. ..+..+++|+.|++++|.+.+..+ ++.+++|+.|++++|.+ .+ + ..+..+++|
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l-~~-~-~~l~~l~~L 245 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-KD-I-GTLASLTNL 245 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC-CC-C-GGGGGCTTC
T ss_pred hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCc-cc-c-hhhhcCCCC
Confidence 88999999999999998754 347899999999999999987655 77899999999999998 33 3 467889999
Q ss_pred CEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEE
Q 038320 318 WDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLREL 397 (467)
Q Consensus 318 ~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L 397 (467)
+.|++++|.+++..+ +..+ ++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|
T Consensus 246 ~~L~l~~n~l~~~~~--~~~l-----~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 314 (466)
T 1o6v_A 246 TDLDLANNQISNLAP--LSGL-----TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYL 314 (466)
T ss_dssp SEEECCSSCCCCCGG--GTTC-----TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEE
T ss_pred CEEECCCCccccchh--hhcC-----CCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEE
Confidence 999999999988655 4444 499999999999997644 8899999999999999996544 7899999999
Q ss_pred ECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCCCCcc
Q 038320 398 YLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPRLT 458 (467)
Q Consensus 398 ~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~ 458 (467)
++++|++++..| +..+++|++|++++|++++. . .+..+++|+.|++++|++++...
T Consensus 315 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--S-SLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--G-GGTTCTTCCEEECCSSCCCBCGG
T ss_pred ECcCCcCCCchh--hccCccCCEeECCCCccCCc--h-hhccCCCCCEEeCCCCccCccch
Confidence 999999997766 78999999999999999875 3 68899999999999998876553
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.4e-34 Score=288.48 Aligned_cols=333 Identities=20% Similarity=0.207 Sum_probs=269.1
Q ss_pred CCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCC
Q 038320 78 GKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIP 157 (467)
Q Consensus 78 ~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 157 (467)
.+++.+++++ +.+++. | .+..+++|++|++++|.+++. | ++.+++|++|++++|.+++ ++
T Consensus 42 ~~L~~L~Ls~-------------n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~--~--~~~l~~L~~L~Ls~N~l~~-~~ 101 (457)
T 3bz5_A 42 ATLTSLDCHN-------------SSITDM-T-GIEKLTGLTKLICTSNNITTL--D--LSQNTNLTYLACDSNKLTN-LD 101 (457)
T ss_dssp TTCCEEECCS-------------SCCCCC-T-TGGGCTTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSSCCSC-CC
T ss_pred CCCCEEEccC-------------CCcccC-h-hhcccCCCCEEEccCCcCCeE--c--cccCCCCCEEECcCCCCce-ee
Confidence 5688888888 777764 4 689999999999999999863 4 8899999999999999986 44
Q ss_pred ccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCcc
Q 038320 158 PSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLS 237 (467)
Q Consensus 158 ~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 237 (467)
++++++|++|++++|.++.++ +..+++|++|++++|.+++. .+..+++|++|++++|...+.. .
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l~------~~~l~~L~~L~l~~N~l~~l------~l~~l~~L~~L~l~~n~~~~~~--~ 165 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKLD------VSQNPLLTYLNCARNTLTEI------DVSHNTQLTELDCHLNKKITKL--D 165 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCCC------CTTCTTCCEEECTTSCCSCC------CCTTCTTCCEEECTTCSCCCCC--C
T ss_pred --cCCCCcCCEEECCCCcCCeec------CCCCCcCCEEECCCCcccee------ccccCCcCCEEECCCCCccccc--c
Confidence 889999999999999998763 78899999999999999885 3678999999999999665554 4
Q ss_pred ccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCC
Q 038320 238 VVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNL 317 (467)
Q Consensus 238 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L 317 (467)
+..+++|++|++++|.+++ +| +..+++|+.|++++|.+++. .++.+++|++|++++|++ ++ +| +..+++|
T Consensus 166 ~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l-~~-ip--~~~l~~L 235 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKL-TE-ID--VTPLTQL 235 (457)
T ss_dssp CTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCC-SC-CC--CTTCTTC
T ss_pred cccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcc-cc-cC--ccccCCC
Confidence 7789999999999999986 44 78899999999999999865 378899999999999999 44 55 7899999
Q ss_pred CEEeccCCcCCCchhhHHHhhhc--ccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCccccccc--------
Q 038320 318 WDLDLSGNDLDGEIIEFVDRLSK--CANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPES-------- 387 (467)
Q Consensus 318 ~~L~l~~n~l~~~~~~~l~~~~~--~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-------- 387 (467)
+.|++++|.+++..+..+..+.. ....+|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|..
T Consensus 236 ~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~ 313 (457)
T 3bz5_A 236 TYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD 313 (457)
T ss_dssp SEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred CEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec
Confidence 99999999999865443332211 111245666666666665555 467899999999999887776642
Q ss_pred ccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhh----------CCCCCCCEEeccCCCCCCCc
Q 038320 388 IGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHF----------SKLKNLKELHIAKYSLAPRL 457 (467)
Q Consensus 388 l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~----------~~l~~L~~l~l~~n~i~~~~ 457 (467)
+..+++|++|++++|++++. + +..+++|+.|++++|++++...-..+ ..+..|+.+++++|
T Consensus 314 l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N------ 384 (457)
T 3bz5_A 314 LSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNN------ 384 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBCTTGGGSSGGGTSEEEEEEEEECCCBCCBTT------
T ss_pred hhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCCccccccccccCCcEEecceeeecCccccccC------
Confidence 55678999999999999974 3 88999999999999999873111001 12245778899999
Q ss_pred cEEEecCCCC
Q 038320 458 TLVFNVSPEW 467 (467)
Q Consensus 458 ~~~g~~p~~~ 467 (467)
.++|.||++|
T Consensus 385 ~l~g~ip~~~ 394 (457)
T 3bz5_A 385 SLTIAVSPDL 394 (457)
T ss_dssp BEEEECCTTC
T ss_pred cEEEEcChhH
Confidence 8999999875
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1e-35 Score=305.84 Aligned_cols=324 Identities=23% Similarity=0.314 Sum_probs=256.6
Q ss_pred CCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCC-CC
Q 038320 78 GKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAG-NI 156 (467)
Q Consensus 78 ~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~ 156 (467)
.+++.+++++ |.+++..|..+..+++|++|++++|.++ .+|.. .+++|++|++++|.+++ .+
T Consensus 76 ~~L~~L~Ls~-------------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~--~l~~L~~L~Ls~N~l~~l~~ 138 (562)
T 3a79_B 76 SELRVLRLSH-------------NRIRSLDFHVFLFNQDLEYLDVSHNRLQ--NISCC--PMASLRHLDLSFNDFDVLPV 138 (562)
T ss_dssp TTCCEEECCS-------------CCCCEECTTTTTTCTTCCEEECTTSCCC--EECSC--CCTTCSEEECCSSCCSBCCC
T ss_pred CCccEEECCC-------------CCCCcCCHHHhCCCCCCCEEECCCCcCC--ccCcc--ccccCCEEECCCCCccccCc
Confidence 3566777766 8999988999999999999999999998 47776 79999999999999986 45
Q ss_pred CccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCC--CCCCCchhhhcC-------------------
Q 038320 157 PPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDL--SKAGSSWVQATN------------------- 215 (467)
Q Consensus 157 p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~--~~~~~~~~~~~~------------------- 215 (467)
|..++++++|++|++++|.++.. .+..+.++ +|++|++++|.+ ++..+.....+.
T Consensus 139 p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~ 214 (562)
T 3a79_B 139 CKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVN 214 (562)
T ss_dssp CGGGGGCTTCCEEEEECSBCCTT---TTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCE
T ss_pred hHhhcccCcccEEecCCCccccC---chhhhhhc-eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhh
Confidence 68899999999999999998752 22223344 449999999998 544332221111
Q ss_pred ----C-------------------------------------------------------CCCCCEEECCCCcCcccCCc
Q 038320 216 ----M-------------------------------------------------------LPSLSELHLPACGLFEFPPL 236 (467)
Q Consensus 216 ----~-------------------------------------------------------l~~L~~L~l~~n~~~~~~~~ 236 (467)
. .++|++|++++|.+.+.+|.
T Consensus 215 ~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~ 294 (562)
T 3a79_B 215 MSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDR 294 (562)
T ss_dssp EEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCC
T ss_pred hcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccc
Confidence 0 12677788888888776665
Q ss_pred cc-----cCCC--------------------------CCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchh
Q 038320 237 SV-----VNFS--------------------------SLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDA 285 (467)
Q Consensus 237 ~l-----~~l~--------------------------~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 285 (467)
.+ ..++ +|++|++++|.+.... ....+++|+.|++++|.+++..|..
T Consensus 295 ~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~ 372 (562)
T 3a79_B 295 EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQG 372 (562)
T ss_dssp CCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTT
T ss_pred hhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhh
Confidence 54 3333 3666666666654321 1267899999999999999988999
Q ss_pred hhCCCCCCEEeCCCCCCCCC--CCcccccCCCCCCEEeccCCcCCCchhh-HHHhhhcccCCCccEEECcCCCCCcCCCc
Q 038320 286 FANMTSLRELDLSENSLIGG--QIPKDLGSLCNLWDLDLSGNDLDGEIIE-FVDRLSKCANSSLESLDLGQNNLGGFLPN 362 (467)
Q Consensus 286 l~~l~~L~~L~L~~n~l~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~~~~~~~~~L~~L~L~~n~i~~~~~~ 362 (467)
+.++++|+.|++++|++ .+ .+|..+..+++|++|++++|.+++.+|. .+..+ ++|++|++++|++++..|.
T Consensus 373 ~~~l~~L~~L~L~~N~l-~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~ 446 (562)
T 3a79_B 373 CSTLKRLQTLILQRNGL-KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA-----ESILVLNLSSNMLTGSVFR 446 (562)
T ss_dssp CCSCSSCCEEECCSSCC-CBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC-----TTCCEEECCSSCCCGGGGS
T ss_pred hcccCCCCEEECCCCCc-CCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc-----ccCCEEECCCCCCCcchhh
Confidence 99999999999999998 44 3456789999999999999999885543 33333 4899999999999987766
Q ss_pred cccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhh-hcCCCCCCEEeCcCCCCcccCCh
Q 038320 363 SLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKS-LGKLSHLVVLDISGNPWIGLVTE 434 (467)
Q Consensus 363 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~l~~n~~~~~~~~ 434 (467)
.+. ++|++|++++|.++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+.|++++|++.+..+.
T Consensus 447 ~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 447 CLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp SCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred hhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 554 79999999999998 78888889999999999999999 56665 89999999999999999986654
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3e-35 Score=304.11 Aligned_cols=309 Identities=22% Similarity=0.221 Sum_probs=209.9
Q ss_pred CCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCC
Q 038320 113 DLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSS 192 (467)
Q Consensus 113 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~ 192 (467)
.+++++.+++++|.+... .+..+.++++|++|++++|.+.+..|..|..+++|++|++++|.++.+++.. ++++++
T Consensus 49 ~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~ 124 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV---FQNVPL 124 (597)
T ss_dssp GGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTT
T ss_pred cCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHH---HcCCCC
Confidence 356677777777766632 3334566777777777777777666666777777777777777776665543 566777
Q ss_pred CCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEe
Q 038320 193 LQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLD 272 (467)
Q Consensus 193 L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 272 (467)
|++|++++|.++...+ ..+..+++|++|++++|.+.+.++..+..+++|++|++++|.+++.. +..+++|+.|+
T Consensus 125 L~~L~L~~n~l~~l~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~ 198 (597)
T 3oja_B 125 LTVLVLERNDLSSLPR---GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHAN 198 (597)
T ss_dssp CCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEE
T ss_pred CCEEEeeCCCCCCCCH---HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhh
Confidence 7777777777765542 23566777777777777777777777777777777777777776532 34567777777
Q ss_pred ccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECc
Q 038320 273 LSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLG 352 (467)
Q Consensus 273 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~ 352 (467)
+++|.+.+ +...++|+.|++++|.+ . .++.. ..++|+.|++++|.+++. ..+..++ +|+.|+++
T Consensus 199 l~~n~l~~-----l~~~~~L~~L~ls~n~l-~-~~~~~--~~~~L~~L~L~~n~l~~~--~~l~~l~-----~L~~L~Ls 262 (597)
T 3oja_B 199 VSYNLLST-----LAIPIAVEELDASHNSI-N-VVRGP--VNVELTILKLQHNNLTDT--AWLLNYP-----GLVEVDLS 262 (597)
T ss_dssp CCSSCCSE-----EECCTTCSEEECCSSCC-C-EEECS--CCSCCCEEECCSSCCCCC--GGGGGCT-----TCSEEECC
T ss_pred cccCcccc-----ccCCchhheeeccCCcc-c-ccccc--cCCCCCEEECCCCCCCCC--hhhccCC-----CCCEEECC
Confidence 77776653 23445677777777776 2 22222 235777777777777762 3344443 77778887
Q ss_pred CCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccC
Q 038320 353 QNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLV 432 (467)
Q Consensus 353 ~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~ 432 (467)
+|.+++..|..++.+++|++|++++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|++++..
T Consensus 263 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 263 YNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp SSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred CCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC
Confidence 777777777777777778888888777774 4666666777888888877776 56666777777888888887776542
Q ss_pred ChhhhCCCCCCCEEeccCCCC
Q 038320 433 TEVHFSKLKNLKELHIAKYSL 453 (467)
Q Consensus 433 ~~~~~~~l~~L~~l~l~~n~i 453 (467)
+..+++|+.|++++|++
T Consensus 341 ----~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 341 ----LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp ----CCTTCCCSEEECCSSCE
T ss_pred ----hhhcCCCCEEEeeCCCC
Confidence 44567777788887754
No 33
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.2e-36 Score=304.68 Aligned_cols=322 Identities=25% Similarity=0.297 Sum_probs=263.3
Q ss_pred CCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCC-CC
Q 038320 78 GKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAG-NI 156 (467)
Q Consensus 78 ~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~ 156 (467)
.+++.+++++ |.+++..|..+..+++|++|++++|+++ .+|.. .+++|++|++++|.+++ .+
T Consensus 45 ~~L~~L~Ls~-------------n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~--~l~~L~~L~L~~N~l~~~~~ 107 (520)
T 2z7x_B 45 SKLRILIISH-------------NRIQYLDISVFKFNQELEYLDLSHNKLV--KISCH--PTVNLKHLDLSFNAFDALPI 107 (520)
T ss_dssp TTCCEEECCS-------------SCCCEEEGGGGTTCTTCCEEECCSSCCC--EEECC--CCCCCSEEECCSSCCSSCCC
T ss_pred ccccEEecCC-------------CccCCcChHHhhcccCCCEEecCCCcee--ecCcc--ccCCccEEeccCCccccccc
Confidence 4677777777 8999988999999999999999999998 46766 79999999999999987 57
Q ss_pred CccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCC--CEEECCCcCC--CCCCCchhhhcC-----------------
Q 038320 157 PPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSL--QYLNLEGVDL--SKAGSSWVQATN----------------- 215 (467)
Q Consensus 157 p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L--~~L~L~~n~~--~~~~~~~~~~~~----------------- 215 (467)
|..++++++|++|++++|.++. . .+..+++| ++|++++|.+ .+..+.....+.
T Consensus 108 p~~~~~l~~L~~L~L~~n~l~~---~---~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~ 181 (520)
T 2z7x_B 108 CKEFGNMSQLKFLGLSTTHLEK---S---SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFI 181 (520)
T ss_dssp CGGGGGCTTCCEEEEEESSCCG---G---GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCC
T ss_pred hhhhccCCcceEEEecCcccch---h---hccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhh
Confidence 8899999999999999998865 1 25667777 9999999998 444332111111
Q ss_pred ------------------------------------C---------------------------CCCCCEEECCCCcCcc
Q 038320 216 ------------------------------------M---------------------------LPSLSELHLPACGLFE 232 (467)
Q Consensus 216 ------------------------------------~---------------------------l~~L~~L~l~~n~~~~ 232 (467)
. .++|++|++++|.+.+
T Consensus 182 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 261 (520)
T 2z7x_B 182 LDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQG 261 (520)
T ss_dssp CCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEES
T ss_pred hhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccC
Confidence 1 2268888888888887
Q ss_pred cCCccc-----cCCCCCcEEEccCCcCCCCcc-hh-------------------------ccCCCCCCEEeccCCccccc
Q 038320 233 FPPLSV-----VNFSSLLFLDLSSNDFNSSIP-QW-------------------------LLNISKLAHLDLSANNLQGN 281 (467)
Q Consensus 233 ~~~~~l-----~~l~~L~~L~l~~n~l~~~~~-~~-------------------------l~~l~~L~~L~l~~n~l~~~ 281 (467)
..|..+ ..+++|+.+++++|.+ .+| .. ...+++|+.|++++|.+++.
T Consensus 262 ~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~ 339 (520)
T 2z7x_B 262 QLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT 339 (520)
T ss_dssp CCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT
T ss_pred ccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChh
Confidence 777776 6777777777666665 233 11 15789999999999999988
Q ss_pred cchhhhCCCCCCEEeCCCCCCCCC--CCcccccCCCCCCEEeccCCcCCCchhhH-HHhhhcccCCCccEEECcCCCCCc
Q 038320 282 IPDAFANMTSLRELDLSENSLIGG--QIPKDLGSLCNLWDLDLSGNDLDGEIIEF-VDRLSKCANSSLESLDLGQNNLGG 358 (467)
Q Consensus 282 ~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~~~~~~~~~L~~L~L~~n~i~~ 358 (467)
.|..+..+++|++|++++|++ .+ .+|..+..+++|++|++++|.+++.+|.. +..+ ++|++|++++|++++
T Consensus 340 ~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l-----~~L~~L~Ls~N~l~~ 413 (520)
T 2z7x_B 340 VFENCGHLTELETLILQMNQL-KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT-----KSLLSLNMSSNILTD 413 (520)
T ss_dssp TTTTCCCCSSCCEEECCSSCC-CBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC-----TTCCEEECCSSCCCG
T ss_pred hhhhhccCCCCCEEEccCCcc-CccccchHHHhhCCCCCEEECCCCcCCcccccchhccC-----ccCCEEECcCCCCCc
Confidence 899999999999999999999 54 55677899999999999999999855543 3333 489999999999998
Q ss_pred CCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhh-hcCCCCCCEEeCcCCCCcccCCh
Q 038320 359 FLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKS-LGKLSHLVVLDISGNPWIGLVTE 434 (467)
Q Consensus 359 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~l~~n~~~~~~~~ 434 (467)
..|..+. ++|++|++++|.++ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++.+..+.
T Consensus 414 ~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 414 TIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp GGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred chhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 7776664 79999999999999 88888889999999999999998 56655 88999999999999999886653
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.3e-35 Score=300.47 Aligned_cols=341 Identities=23% Similarity=0.242 Sum_probs=231.8
Q ss_pred cccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCC
Q 038320 101 YQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLE 180 (467)
Q Consensus 101 ~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~ 180 (467)
+.++ .+|..+. ++|++|++++|++++. .|..+.++++|++|++++|.+.+..|..|.++++|++|++++|.++.++
T Consensus 15 ~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 90 (549)
T 2z81_A 15 RSFT-SIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 90 (549)
T ss_dssp SCCS-SCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC
T ss_pred Cccc-cccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC
Confidence 4554 4555443 7999999999999875 6788999999999999999999888889999999999999999998766
Q ss_pred CCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCc-CcccCCccccCCCCCcEEEccCCcCCCCcc
Q 038320 181 SDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACG-LFEFPPLSVVNFSSLLFLDLSSNDFNSSIP 259 (467)
Q Consensus 181 ~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 259 (467)
... +.++++|++|++++|.+++... +..+..+++|++|++++|. +...++..+.++++|++|++++|.+++..|
T Consensus 91 ~~~---~~~l~~L~~L~Ls~n~l~~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 91 SSW---FGPLSSLKYLNLMGNPYQTLGV--TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp HHH---HTTCTTCCEEECTTCCCSSSCS--SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred HHH---hccCCCCcEEECCCCcccccch--hhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence 543 7899999999999999986421 2367889999999999998 555555789999999999999999999899
Q ss_pred hhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCC--c-ccccCCCCCCEEeccCCcCCCchhhHHH
Q 038320 260 QWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQI--P-KDLGSLCNLWDLDLSGNDLDGEIIEFVD 336 (467)
Q Consensus 260 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 336 (467)
..+..+++|+.|++++|.+.......+..+++|++|++++|.+ .+.. + .....+++|+.|++++|.+++..+..+.
T Consensus 166 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 244 (549)
T 2z81_A 166 QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL-ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244 (549)
T ss_dssp TTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBC-TTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHH
T ss_pred hhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcc-ccccccccchhhhhhcccceeccccccchhHHHHHH
Confidence 9999999999999999987643333346789999999999988 3321 1 1122344555555555544433222221
Q ss_pred hhh----------------------------------------------------------cccCCCccEEECcCCCCCc
Q 038320 337 RLS----------------------------------------------------------KCANSSLESLDLGQNNLGG 358 (467)
Q Consensus 337 ~~~----------------------------------------------------------~~~~~~L~~L~L~~n~i~~ 358 (467)
... ....++|+.|++++|.++
T Consensus 245 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~- 323 (549)
T 2z81_A 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF- 323 (549)
T ss_dssp GGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-
T ss_pred HHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-
Confidence 100 000124455555555544
Q ss_pred CCCccc-cCCCCCCEEEccCCcCcccccc---cccCCCCCCEEECcCCcCcccCh--hhhcCCCCCCEEeCcCCCCcccC
Q 038320 359 FLPNSL-GQLENLKILQLWGNLFRGSIPE---SIGNLSSLRELYLHNNLMDGTIP--KSLGKLSHLVVLDISGNPWIGLV 432 (467)
Q Consensus 359 ~~~~~l-~~l~~L~~L~l~~n~l~~~~~~---~l~~~~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~l~~n~~~~~~ 432 (467)
.+|..+ ..+++|++|++++|.+++.+|. .++.+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+
T Consensus 324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l 402 (549)
T 2z81_A 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PM 402 (549)
T ss_dssp CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CC
T ss_pred cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cC
Confidence 233333 3455666666666665554432 24455556666666665553321 33555556666666666555 34
Q ss_pred ChhhhCCCCCCCEEeccCCCCC
Q 038320 433 TEVHFSKLKNLKELHIAKYSLA 454 (467)
Q Consensus 433 ~~~~~~~l~~L~~l~l~~n~i~ 454 (467)
|. .+..+++|+.|++++|+|+
T Consensus 403 p~-~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 403 PD-SCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp CS-CCCCCTTCCEEECTTSCCS
T ss_pred Ch-hhcccccccEEECCCCCcc
Confidence 44 3445555555555555544
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.5e-33 Score=271.93 Aligned_cols=303 Identities=25% Similarity=0.363 Sum_probs=257.2
Q ss_pred CCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCC
Q 038320 78 GKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIP 157 (467)
Q Consensus 78 ~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 157 (467)
..++.+++++ +.+.. ++ .+..+++|++|++++|.+++ ++. +.++++|++|++++|.+.+ ++
T Consensus 44 ~~L~~L~l~~-------------~~i~~-~~-~~~~~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~-~~ 104 (347)
T 4fmz_A 44 ESITKLVVAG-------------EKVAS-IQ-GIEYLTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITD-IS 104 (347)
T ss_dssp TTCSEEECCS-------------SCCCC-CT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC-CG
T ss_pred ccccEEEEeC-------------Ccccc-ch-hhhhcCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccC-ch
Confidence 4688889887 55543 23 48889999999999999985 444 8999999999999999984 44
Q ss_pred ccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCcc
Q 038320 158 PSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLS 237 (467)
Q Consensus 158 ~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 237 (467)
.+.++++|++|++++|.+..++. +..+++|++|++++|...... ..+..+++|++|++++|.+.+..+
T Consensus 105 -~~~~l~~L~~L~l~~n~i~~~~~-----~~~l~~L~~L~l~~n~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~-- 172 (347)
T 4fmz_A 105 -ALQNLTNLRELYLNEDNISDISP-----LANLTKMYSLNLGANHNLSDL----SPLSNMTGLNYLTVTESKVKDVTP-- 172 (347)
T ss_dssp -GGTTCTTCSEEECTTSCCCCCGG-----GTTCTTCCEEECTTCTTCCCC----GGGTTCTTCCEEECCSSCCCCCGG--
T ss_pred -HHcCCCcCCEEECcCCcccCchh-----hccCCceeEEECCCCCCcccc----cchhhCCCCcEEEecCCCcCCchh--
Confidence 58999999999999999887654 789999999999999665543 358899999999999999987765
Q ss_pred ccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCC
Q 038320 238 VVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNL 317 (467)
Q Consensus 238 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L 317 (467)
+..+++|++|++++|.+.+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+ .+ .+. +..+++|
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l-~~-~~~-~~~l~~L 245 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKI-TD-LSP-LANLSQL 245 (347)
T ss_dssp GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC-CC-CGG-GTTCTTC
T ss_pred hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCcc-CC-Ccc-hhcCCCC
Confidence 7899999999999999985433 7889999999999999986544 88999999999999998 43 333 8899999
Q ss_pred CEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEE
Q 038320 318 WDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLREL 397 (467)
Q Consensus 318 ~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L 397 (467)
++|++++|.+++. ..+..+ ++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 246 ~~L~l~~n~l~~~--~~~~~l-----~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 316 (347)
T 4fmz_A 246 TWLEIGTNQISDI--NAVKDL-----TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316 (347)
T ss_dssp CEEECCSSCCCCC--GGGTTC-----TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred CEEECCCCccCCC--hhHhcC-----CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence 9999999999874 234443 4999999999999875 568899999999999999998888999999999999
Q ss_pred ECcCCcCcccChhhhcCCCCCCEEeCcCCCCc
Q 038320 398 YLHNNLMDGTIPKSLGKLSHLVVLDISGNPWI 429 (467)
Q Consensus 398 ~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~ 429 (467)
++++|++++..| +..+++|++|++++|+++
T Consensus 317 ~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 317 FLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp ECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EccCCccccccC--hhhhhccceeehhhhccc
Confidence 999999997666 889999999999999875
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-33 Score=277.26 Aligned_cols=319 Identities=20% Similarity=0.176 Sum_probs=267.5
Q ss_pred cCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccC
Q 038320 94 FTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNT 173 (467)
Q Consensus 94 ~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~ 173 (467)
+.+++.++.++...+..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+..|..+.++++|++|++++
T Consensus 48 ~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 126 (390)
T 3o6n_A 48 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126 (390)
T ss_dssp SEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eEEEecCCchhhCChhHhcccccCcEEECCCCccccc-ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCC
Confidence 3344444666655555578999999999999999865 566899999999999999999988888899999999999999
Q ss_pred ccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCc
Q 038320 174 FYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSND 253 (467)
Q Consensus 174 n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 253 (467)
|.++.++... +.++++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.. +..+++|+.|++++|.
T Consensus 127 n~l~~l~~~~---~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 127 NDLSSLPRGI---FHNTPKLTTLSMSNNNLERIED---DTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL 197 (390)
T ss_dssp SCCCCCCTTT---TTTCTTCCEEECCSSCCCBCCT---TTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred CccCcCCHHH---hcCCCCCcEEECCCCccCccCh---hhccCCCCCCEEECCCCcCCccc---cccccccceeeccccc
Confidence 9999888763 5789999999999999988763 36788999999999999998763 5678999999999998
Q ss_pred CCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhh
Q 038320 254 FNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIE 333 (467)
Q Consensus 254 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 333 (467)
+++ +...++|+.|++++|.+... +. ...++|+.|++++|.+ .+. ..+..+++|+.|++++|.+++..+.
T Consensus 198 l~~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l-~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 198 LST-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNL-TDT--AWLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp CSE-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCC-CCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred ccc-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCC-ccc--HHHcCCCCccEEECCCCcCCCcChh
Confidence 864 33457899999999999854 33 2357999999999999 432 5788999999999999999988888
Q ss_pred HHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhc
Q 038320 334 FVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLG 413 (467)
Q Consensus 334 ~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~ 413 (467)
.+..++ +|++|++++|++++ ++..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++. + +.
T Consensus 267 ~~~~l~-----~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~ 336 (390)
T 3o6n_A 267 PFVKMQ-----RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LS 336 (390)
T ss_dssp GGTTCS-----SCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CC
T ss_pred Hccccc-----cCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--ch
Confidence 877766 99999999999986 4566678999999999999998 6777788899999999999999854 3 67
Q ss_pred CCCCCCEEeCcCCCCcccCChhhhCCCCCC
Q 038320 414 KLSHLVVLDISGNPWIGLVTEVHFSKLKNL 443 (467)
Q Consensus 414 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 443 (467)
.+++|+.|++++|++...-....+..++..
T Consensus 337 ~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~ 366 (390)
T 3o6n_A 337 THHTLKNLTLSHNDWDCNSLRALFRNVARP 366 (390)
T ss_dssp TTCCCSEEECCSSCEEHHHHHHHTTTCCTT
T ss_pred hhccCCEEEcCCCCccchhHHHHHHHHHhh
Confidence 899999999999999876554345444443
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=6.4e-33 Score=276.52 Aligned_cols=306 Identities=22% Similarity=0.201 Sum_probs=251.8
Q ss_pred cCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhh
Q 038320 107 ISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEW 186 (467)
Q Consensus 107 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~ 186 (467)
.+..++++++|++|++++|.+++ +| .++.+++|++|++++|.+++ +| ++.+++|++|++++|.++.++
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~~------ 101 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNLD------ 101 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC------
T ss_pred cccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCceee------
Confidence 34467788999999999999985 45 68889999999999999985 44 889999999999999988763
Q ss_pred cCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCC
Q 038320 187 LSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNIS 266 (467)
Q Consensus 187 l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 266 (467)
+.++++|++|++++|.+++. .+..+++|++|++++|.+++. .+..+++|++|++++|...+.+ .+..++
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l------~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~ 170 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKL------DVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQT 170 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCC------CCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCT
T ss_pred cCCCCcCCEEECCCCcCCee------cCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCC
Confidence 77899999999999999875 267899999999999999885 3778999999999999766666 477889
Q ss_pred CCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCc
Q 038320 267 KLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSL 346 (467)
Q Consensus 267 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L 346 (467)
+|+.|++++|.+++ +| +..+++|+.|++++|.+ ++. .++.+++|+.|++++|++++ +| +..+ ++|
T Consensus 171 ~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l-~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l-----~~L 235 (457)
T 3bz5_A 171 QLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNI-TKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPL-----TQL 235 (457)
T ss_dssp TCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCC-SCC---CCTTCTTCSEEECCSSCCSC-CC--CTTC-----TTC
T ss_pred cCCEEECCCCccce-ec--cccCCCCCEEECcCCcC-Cee---ccccCCCCCEEECcCCcccc-cC--cccc-----CCC
Confidence 99999999999986 44 78899999999999998 443 37889999999999999988 33 3443 489
Q ss_pred cEEECcCCCCCcCCCccccCCC-------CCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhh--------
Q 038320 347 ESLDLGQNNLGGFLPNSLGQLE-------NLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKS-------- 411 (467)
Q Consensus 347 ~~L~L~~n~i~~~~~~~l~~l~-------~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~-------- 411 (467)
++|++++|++++..+..+..+. +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|..
T Consensus 236 ~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~ 313 (457)
T 3bz5_A 236 TYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD 313 (457)
T ss_dssp SEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred CEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec
Confidence 9999999999987554444443 55666777777776666 467899999999999877766642
Q ss_pred hcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCCCC
Q 038320 412 LGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPR 456 (467)
Q Consensus 412 l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~~ 456 (467)
+..+++|++|++++|++++. + +..+++|+.|++++|++++.
T Consensus 314 l~~~~~L~~L~L~~N~l~~l-~---l~~l~~L~~L~l~~N~l~~l 354 (457)
T 3bz5_A 314 LSQNPKLVYLYLNNTELTEL-D---VSHNTKLKSLSCVNAHIQDF 354 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCC-C---CTTCTTCSEEECCSSCCCBC
T ss_pred hhhcccCCEEECCCCccccc-c---cccCCcCcEEECCCCCCCCc
Confidence 55678999999999999884 2 77899999999999988853
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5e-33 Score=287.42 Aligned_cols=316 Identities=20% Similarity=0.179 Sum_probs=268.6
Q ss_pred CCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCc
Q 038320 95 TDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTF 174 (467)
Q Consensus 95 ~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n 174 (467)
.+++.++.+.+..+..+..+++|++|+|++|.+++. .|..++.+++|++|++++|.+++..|..|+++++|++|++++|
T Consensus 55 ~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 133 (597)
T 3oja_B 55 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 133 (597)
T ss_dssp EEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCC-ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC
Confidence 344444777666566678999999999999999875 6678999999999999999999888888999999999999999
Q ss_pred cCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcC
Q 038320 175 YYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDF 254 (467)
Q Consensus 175 ~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 254 (467)
.++.++... +.++++|++|++++|.+++..+ ..+..+++|+.|++++|.+.+.. +..+++|+.|++++|.+
T Consensus 134 ~l~~l~~~~---~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 134 DLSSLPRGI---FHNTPKLTTLSMSNNNLERIED---DTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp CCCCCCTTT---TTTCTTCCEEECCSSCCCBCCT---TTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred CCCCCCHHH---hccCCCCCEEEeeCCcCCCCCh---hhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence 999888764 5889999999999999988764 36788999999999999998864 56789999999999988
Q ss_pred CCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhH
Q 038320 255 NSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEF 334 (467)
Q Consensus 255 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 334 (467)
++ +...++|+.|++++|.+....+. ..++|+.|++++|.+ .+ +..+..+++|+.|++++|.+++..|..
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l-~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNL-TD--TAWLLNYPGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCC-CC--CGGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred cc-----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCC-CC--ChhhccCCCCCEEECCCCccCCCCHHH
Confidence 64 34557899999999999754332 246899999999999 44 367889999999999999999988888
Q ss_pred HHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcC
Q 038320 335 VDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGK 414 (467)
Q Consensus 335 l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~ 414 (467)
+..++ +|+.|++++|.+++ +|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+++. + +..
T Consensus 274 ~~~l~-----~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~ 343 (597)
T 3oja_B 274 FVKMQ-----RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LST 343 (597)
T ss_dssp GTTCS-----SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCT
T ss_pred hcCcc-----CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhh
Confidence 87776 99999999999996 4667788999999999999998 6788888999999999999999854 3 678
Q ss_pred CCCCCEEeCcCCCCcccCChhhhCCCC
Q 038320 415 LSHLVVLDISGNPWIGLVTEVHFSKLK 441 (467)
Q Consensus 415 l~~L~~L~l~~n~~~~~~~~~~~~~l~ 441 (467)
+++|+.|++++|++.+......+..+.
T Consensus 344 ~~~L~~L~l~~N~~~~~~~~~~~~~~~ 370 (597)
T 3oja_B 344 HHTLKNLTLSHNDWDCNSLRALFRNVA 370 (597)
T ss_dssp TCCCSEEECCSSCEEHHHHHHHTTTCC
T ss_pred cCCCCEEEeeCCCCCChhHHHHHHHHh
Confidence 899999999999998765543444433
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.3e-32 Score=283.71 Aligned_cols=329 Identities=26% Similarity=0.239 Sum_probs=253.2
Q ss_pred CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCC
Q 038320 115 KHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQ 194 (467)
Q Consensus 115 ~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~ 194 (467)
+++++|||++|+|++. .+..|.++++|++|+|++|++++..|..|.++++|++|++++|+++.++... |.++++|+
T Consensus 52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~---f~~L~~L~ 127 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA---FSGLSSLQ 127 (635)
T ss_dssp TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG---GTTCTTCC
T ss_pred cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH---hcCCCCCC
Confidence 4799999999999965 5678999999999999999999777778999999999999999999887654 78999999
Q ss_pred EEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCccc-CCccccCCCCCcEEEccCCcCCCCcchhccC---------
Q 038320 195 YLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEF-PPLSVVNFSSLLFLDLSSNDFNSSIPQWLLN--------- 264 (467)
Q Consensus 195 ~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~--------- 264 (467)
+|++++|.+++..+. .+..+++|++|++++|.+... .|..+..+++|++|++++|.+++..+..+..
T Consensus 128 ~L~Ls~N~l~~l~~~---~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~ 204 (635)
T 4g8a_A 128 KLVAVETNLASLENF---PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 204 (635)
T ss_dssp EEECTTSCCCCSTTC---CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCC
T ss_pred EEECCCCcCCCCChh---hhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhh
Confidence 999999999987643 578899999999999999764 5677889999999999999876433322211
Q ss_pred --------------------------------------------------------------------------------
Q 038320 265 -------------------------------------------------------------------------------- 264 (467)
Q Consensus 265 -------------------------------------------------------------------------------- 264 (467)
T Consensus 205 ~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 284 (635)
T 4g8a_A 205 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 284 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEE
T ss_pred hhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhh
Confidence
Q ss_pred ------------------------------------------CCCCCEEeccCCccccccc-------------------
Q 038320 265 ------------------------------------------ISKLAHLDLSANNLQGNIP------------------- 283 (467)
Q Consensus 265 ------------------------------------------l~~L~~L~l~~n~l~~~~~------------------- 283 (467)
...++.|++.+|.+.+..+
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 364 (635)
T 4g8a_A 285 EFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 364 (635)
T ss_dssp EEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCB
T ss_pred hhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCC
Confidence 1122333333332221110
Q ss_pred hhhhCCCCCCEEeCCCCCCCC-CCCcccccC-----------------------CCCCCEEeccCCcCCCchh-hHHHhh
Q 038320 284 DAFANMTSLRELDLSENSLIG-GQIPKDLGS-----------------------LCNLWDLDLSGNDLDGEII-EFVDRL 338 (467)
Q Consensus 284 ~~l~~l~~L~~L~L~~n~l~~-~~~~~~l~~-----------------------l~~L~~L~l~~n~l~~~~~-~~l~~~ 338 (467)
.....+++|+.+++++|.+.. +..+..... +++|+.+++..+......+ ..+
T Consensus 365 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~--- 441 (635)
T 4g8a_A 365 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF--- 441 (635)
T ss_dssp CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTT---
T ss_pred cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccc---
Confidence 011245778888888887621 112222333 4444555554444332221 112
Q ss_pred hcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCc-ccccccccCCCCCCEEECcCCcCcccChhhhcCCCC
Q 038320 339 SKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFR-GSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSH 417 (467)
Q Consensus 339 ~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~ 417 (467)
....+++.++++.|.+.+..+..+..++.+++|++++|.+. +..|..+..+++|++|+|++|++++..|..|.++++
T Consensus 442 --~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~ 519 (635)
T 4g8a_A 442 --LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 519 (635)
T ss_dssp --TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred --ccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCC
Confidence 23348999999999999888889999999999999999754 457788999999999999999999999999999999
Q ss_pred CCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCCCC
Q 038320 418 LVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPR 456 (467)
Q Consensus 418 L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~~ 456 (467)
|++|+|++|++++..+. .|..+++|+.|+|++|+|+..
T Consensus 520 L~~L~Ls~N~l~~l~~~-~~~~l~~L~~L~Ls~N~l~~~ 557 (635)
T 4g8a_A 520 LQVLNMSHNNFFSLDTF-PYKCLNSLQVLDYSLNHIMTS 557 (635)
T ss_dssp CCEEECTTSCCCBCCCG-GGTTCTTCCEEECTTSCCCBC
T ss_pred CCEEECCCCcCCCCChh-HHhCCCCCCEEECCCCcCCCC
Confidence 99999999999988887 899999999999999988644
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.4e-31 Score=256.38 Aligned_cols=290 Identities=20% Similarity=0.263 Sum_probs=174.7
Q ss_pred CCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCE
Q 038320 116 HLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQY 195 (467)
Q Consensus 116 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~ 195 (467)
++++++++++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.++.+.+.. +.++++|++
T Consensus 32 ~l~~l~~~~~~l~--~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~ 104 (330)
T 1xku_A 32 HLRVVQCSDLGLE--KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA---FAPLVKLER 104 (330)
T ss_dssp ETTEEECTTSCCC--SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT---TTTCTTCCE
T ss_pred CCeEEEecCCCcc--ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH---hcCCCCCCE
Confidence 3455555555544 2443332 45555566555555444444555555555555555554442221 344444444
Q ss_pred EECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccC
Q 038320 196 LNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSA 275 (467)
Q Consensus 196 L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 275 (467)
|++++|.++..... + .+ +|++|++++|.+++..+..+.++++|+.|++++
T Consensus 105 L~Ls~n~l~~l~~~----~--~~------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 154 (330)
T 1xku_A 105 LYLSKNQLKELPEK----M--PK------------------------TLQELRVHENEITKVRKSVFNGLNQMIVVELGT 154 (330)
T ss_dssp EECCSSCCSBCCSS----C--CT------------------------TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCS
T ss_pred EECCCCcCCccChh----h--cc------------------------cccEEECCCCcccccCHhHhcCCccccEEECCC
Confidence 44444444322110 0 13 444444445544444444455555555555555
Q ss_pred Ccccc--ccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcC
Q 038320 276 NNLQG--NIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQ 353 (467)
Q Consensus 276 n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~ 353 (467)
|.+.. ..+..+.++++|++|++++|.+ ..+|..+. ++|+.|++++|.+++..+..+..++ +|++|++++
T Consensus 155 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l--~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~Ls~ 225 (330)
T 1xku_A 155 NPLKSSGIENGAFQGMKKLSYIRIADTNI--TTIPQGLP--PSLTELHLDGNKITKVDAASLKGLN-----NLAKLGLSF 225 (330)
T ss_dssp SCCCGGGBCTTGGGGCTTCCEEECCSSCC--CSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCT-----TCCEEECCS
T ss_pred CcCCccCcChhhccCCCCcCEEECCCCcc--ccCCcccc--ccCCEEECCCCcCCccCHHHhcCCC-----CCCEEECCC
Confidence 55532 4455566666677777766666 23443332 6777777777777766666665554 788888888
Q ss_pred CCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcC------CCCCCEEeCcCCC
Q 038320 354 NNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGK------LSHLVVLDISGNP 427 (467)
Q Consensus 354 n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~------l~~L~~L~l~~n~ 427 (467)
|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..++. .+.++.+++++|+
T Consensus 226 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 226 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp SCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence 8887766667778888888888888887 67777888888888888888887665555543 3788899999998
Q ss_pred Ccc-cCChhhhCCCCCCCEEeccCCC
Q 038320 428 WIG-LVTEVHFSKLKNLKELHIAKYS 452 (467)
Q Consensus 428 ~~~-~~~~~~~~~l~~L~~l~l~~n~ 452 (467)
+.. .++...|..+++++.+++++|+
T Consensus 305 ~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 305 VQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccccCccccccccceeEEEecccC
Confidence 863 3443478889999999999883
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=7.6e-34 Score=271.33 Aligned_cols=274 Identities=19% Similarity=0.199 Sum_probs=178.4
Q ss_pred cccccccHhhHHHHHHhHhcC-CCCCCCCCCCC-----CCCCCCcccEEecC--------CCCCEEEEEcCCCCCCCCcC
Q 038320 30 QSIARCVQNEKEALLKIKASV-TDPSGRLSSWT-----GEDCCKWEGVICDN--------STGKVVQLKLRSPEIPDSFT 95 (467)
Q Consensus 30 ~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~w~-----~~~~c~w~gv~c~~--------~~~~v~~l~l~~~~~~~~~~ 95 (467)
++.+.+..+|+.||++||+.+ .+|.++..+|. ..++|.|.|+.|.. ...+|+.+++++
T Consensus 19 ~~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~-------- 90 (328)
T 4fcg_A 19 FQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS-------- 90 (328)
T ss_dssp CC--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES--------
T ss_pred eeccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccC--------
Confidence 334556789999999999987 46666667782 56789999999942 346788888887
Q ss_pred CCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCcc
Q 038320 96 DNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFY 175 (467)
Q Consensus 96 ~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 175 (467)
+.++ .+|..++++++|++|+|++|.++ .+|..++++++|++|++++|.+. .+|..+.++++|++|++++|.
T Consensus 91 -----n~l~-~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~ 161 (328)
T 4fcg_A 91 -----VPLP-QFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACP 161 (328)
T ss_dssp -----SCCS-SCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEET
T ss_pred -----CCch-hcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCC
Confidence 6666 67777888888999999888888 48888888888999999888888 778888888888888888866
Q ss_pred CC-CCCCCCh-----hhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEc
Q 038320 176 YS-SLESDDV-----EWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDL 249 (467)
Q Consensus 176 ~~-~l~~~~~-----~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 249 (467)
+. .+|.... ..+..+++|++|++++|.++.. +..+..+++|++|++++|.+.+.++ .+..+++|++|++
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l----p~~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~~L~~L~L 236 (328)
T 4fcg_A 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL----PASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDL 236 (328)
T ss_dssp TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC----CGGGGGCTTCCEEEEESSCCCCCCG-GGGGCTTCCEEEC
T ss_pred CccccChhHhhccchhhhccCCCCCEEECcCCCcCcc----hHhhcCCCCCCEEEccCCCCCcCch-hhccCCCCCEEEC
Confidence 54 3333210 0122356666666666655522 2234455555555555555554322 4555555555555
Q ss_pred cCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCc
Q 038320 250 SSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGND 326 (467)
Q Consensus 250 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~ 326 (467)
++|.+.+.+|..+.++++|+.|++++|.+.+.+|..+.++++|++|++++|.+ .+.+|..++++++|+.+++..+.
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~-~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN-LSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT-CCCCCGGGGGSCTTCEEECCGGG
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc-hhhccHHHhhccCceEEeCCHHH
Confidence 55555555555555555555555555555555555555555555555555555 45555555555555555555443
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=4.7e-32 Score=259.84 Aligned_cols=287 Identities=23% Similarity=0.283 Sum_probs=179.9
Q ss_pred CCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCE
Q 038320 116 HLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQY 195 (467)
Q Consensus 116 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~ 195 (467)
++++++++++.++ .+|..+. ++|++|++++|.+.+..|..+.++++|++|++++|.++.+.+.. +.++++|++
T Consensus 34 ~l~~l~~~~~~l~--~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~ 106 (332)
T 2ft3_A 34 HLRVVQCSDLGLK--AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA---FSPLRKLQK 106 (332)
T ss_dssp ETTEEECCSSCCS--SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG---STTCTTCCE
T ss_pred cCCEEECCCCCcc--ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH---hhCcCCCCE
Confidence 6888888888877 4666553 68888899888888666777888888888888888877654332 667777777
Q ss_pred EECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCC--CcchhccCCCCCCEEec
Q 038320 196 LNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNS--SIPQWLLNISKLAHLDL 273 (467)
Q Consensus 196 L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l 273 (467)
|++++|.++..... + .++|++|++++|.+.+..+..+..+++|++|++++|.++. ..+..+..+ +|+.|++
T Consensus 107 L~L~~n~l~~l~~~----~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l 179 (332)
T 2ft3_A 107 LYISKNHLVEIPPN----L--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRI 179 (332)
T ss_dssp EECCSSCCCSCCSS----C--CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBC
T ss_pred EECCCCcCCccCcc----c--cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEEC
Confidence 77777776644321 1 1566666666666665555555556666666666665532 333444444 5555555
Q ss_pred cCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcC
Q 038320 274 SANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQ 353 (467)
Q Consensus 274 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~ 353 (467)
++|.+++ +|..+. ++|+.|++++|.+++..+..+..++ +|++|++++
T Consensus 180 ~~n~l~~--------------------------l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~-----~L~~L~L~~ 226 (332)
T 2ft3_A 180 SEAKLTG--------------------------IPKDLP--ETLNELHLDHNKIQAIELEDLLRYS-----KLYRLGLGH 226 (332)
T ss_dssp CSSBCSS--------------------------CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCT-----TCSCCBCCS
T ss_pred cCCCCCc--------------------------cCcccc--CCCCEEECCCCcCCccCHHHhcCCC-----CCCEEECCC
Confidence 5555442 222221 3455555555555544444444333 566666666
Q ss_pred CCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcC------CCCCCEEeCcCCC
Q 038320 354 NNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGK------LSHLVVLDISGNP 427 (467)
Q Consensus 354 n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~------l~~L~~L~l~~n~ 427 (467)
|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+.. .++|+.|++++|+
T Consensus 227 N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 227 NQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp SCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred CcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence 6666555556666667777777777766 56666667777777777777776555555543 3567888888888
Q ss_pred Cc--ccCChhhhCCCCCCCEEeccCC
Q 038320 428 WI--GLVTEVHFSKLKNLKELHIAKY 451 (467)
Q Consensus 428 ~~--~~~~~~~~~~l~~L~~l~l~~n 451 (467)
+. +..+. .|..+++|+.+++++|
T Consensus 306 ~~~~~~~~~-~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 306 VPYWEVQPA-TFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SCGGGSCGG-GGTTBCCSTTEEC---
T ss_pred ccccccCcc-cccccchhhhhhcccc
Confidence 76 33333 6778888888888877
No 43
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=7.1e-31 Score=261.55 Aligned_cols=298 Identities=24% Similarity=0.299 Sum_probs=216.9
Q ss_pred CCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCcc
Q 038320 96 DNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFY 175 (467)
Q Consensus 96 ~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 175 (467)
+++++|.+++ +|.. +++|++|++++|++++ ++.. .++|++|++++|.+++ +| .++++++|++|++++|.
T Consensus 96 L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~--l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~ 164 (454)
T 1jl5_A 96 LVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA--LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNS 164 (454)
T ss_dssp EECCSSCCSS-CCCC---CTTCCEEECCSSCCSC--CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSC
T ss_pred EEccCCcCCc-cccc---cCCCcEEECCCCccCc--ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCc
Confidence 3333477777 5543 4789999999988874 3332 2689999999999885 77 58899999999999998
Q ss_pred CCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCC
Q 038320 176 YSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFN 255 (467)
Q Consensus 176 ~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 255 (467)
++.++.. ..+|++|++++|.+++.. .+..+++|++|++++|.+.+.+. . .++|++|++++|.++
T Consensus 165 l~~lp~~-------~~~L~~L~L~~n~l~~l~-----~~~~l~~L~~L~l~~N~l~~l~~-~---~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 165 LKKLPDL-------PPSLEFIAAGNNQLEELP-----ELQNLPFLTAIYADNNSLKKLPD-L---PLSLESIVAGNNILE 228 (454)
T ss_dssp CSCCCCC-------CTTCCEEECCSSCCSSCC-----CCTTCTTCCEEECCSSCCSSCCC-C---CTTCCEEECCSSCCS
T ss_pred CcccCCC-------cccccEEECcCCcCCcCc-----cccCCCCCCEEECCCCcCCcCCC-C---cCcccEEECcCCcCC
Confidence 8876653 248999999999888742 47888999999999998887432 1 258999999999887
Q ss_pred CCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHH
Q 038320 256 SSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFV 335 (467)
Q Consensus 256 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 335 (467)
.+|. +..+++|+.|++++|.+++ +|. .+++|+.|++++|.+ .+ +|.. .++|+.|++++|.+++...
T Consensus 229 -~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l-~~-l~~~---~~~L~~L~ls~N~l~~l~~--- 294 (454)
T 1jl5_A 229 -ELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYL-TD-LPEL---PQSLTFLDVSENIFSGLSE--- 294 (454)
T ss_dssp -SCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCC-SC-CCCC---CTTCCEEECCSSCCSEESC---
T ss_pred -cccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcc-cc-cCcc---cCcCCEEECcCCccCcccC---
Confidence 6674 7888999999999998885 443 247899999999988 33 5543 4789999999998876211
Q ss_pred HhhhcccCCCccEEECcCCCCCcCCCccccCC-CCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcC
Q 038320 336 DRLSKCANSSLESLDLGQNNLGGFLPNSLGQL-ENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGK 414 (467)
Q Consensus 336 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~ 414 (467)
. +++|++|++++|++++. ..+ ++|++|++++|.+++ +|.. +++|++|++++|+++ .+|. .
T Consensus 295 --~----~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~ 355 (454)
T 1jl5_A 295 --L----PPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---L 355 (454)
T ss_dssp --C----CTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---C
T ss_pred --c----CCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---h
Confidence 1 13789999999988752 223 589999999999885 5653 588999999999988 5666 4
Q ss_pred CCCCCEEeCcCCCCcc--cCChhhhCCC-------------CCCCEEeccCCCCC
Q 038320 415 LSHLVVLDISGNPWIG--LVTEVHFSKL-------------KNLKELHIAKYSLA 454 (467)
Q Consensus 415 l~~L~~L~l~~n~~~~--~~~~~~~~~l-------------~~L~~l~l~~n~i~ 454 (467)
+++|++|++++|++++ .+|. .+..+ ++|+.|++++|+++
T Consensus 356 l~~L~~L~L~~N~l~~l~~ip~-~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 356 PQNLKQLHVEYNPLREFPDIPE-SVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp CTTCCEEECCSSCCSSCCCCCT-TCCEEECCC-----------------------
T ss_pred hhhccEEECCCCCCCcCCCChH-HHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 7889999999999988 7777 56666 78999999999665
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5.2e-33 Score=263.93 Aligned_cols=249 Identities=27% Similarity=0.394 Sum_probs=219.1
Q ss_pred CCCCEEECCCcCCCC--CCCchhhhcCCCCCCCEEECCC-CcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCC
Q 038320 191 SSLQYLNLEGVDLSK--AGSSWVQATNMLPSLSELHLPA-CGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISK 267 (467)
Q Consensus 191 ~~L~~L~L~~n~~~~--~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 267 (467)
.+++.|++++|.+.+ .. +..+..+++|++|++++ |.+.+.+|..+.++++|++|++++|.+++.+|..+.++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~---~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPI---PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEEC---CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCccc---ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 356666666666665 33 33667788888888884 8888888888999999999999999998888999999999
Q ss_pred CCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCC-CCCEEeccCCcCCCchhhHHHhhhcccCCCc
Q 038320 268 LAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLC-NLWDLDLSGNDLDGEIIEFVDRLSKCANSSL 346 (467)
Q Consensus 268 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L 346 (467)
|++|++++|.+++.+|..+..+++|++|++++|.+ .+.+|..+..++ +|++|++++|.+++..|..+... +|
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l-~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l------~L 199 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI-SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL------NL 199 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC-EEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC------CC
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcc-cCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC------cc
Confidence 99999999999988999999999999999999998 778888898887 99999999999998888877665 49
Q ss_pred cEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCC
Q 038320 347 ESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGN 426 (467)
Q Consensus 347 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n 426 (467)
++|++++|.+++..|..+..+++|++|++++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|
T Consensus 200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence 9999999999998999999999999999999999977666 788999999999999999999999999999999999999
Q ss_pred CCcccCChhhhCCCCCCCEEeccCCC
Q 038320 427 PWIGLVTEVHFSKLKNLKELHIAKYS 452 (467)
Q Consensus 427 ~~~~~~~~~~~~~l~~L~~l~l~~n~ 452 (467)
++++.+|. . ..+++|+.+++++|+
T Consensus 279 ~l~~~ip~-~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 279 NLCGEIPQ-G-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EEEEECCC-S-TTGGGSCGGGTCSSS
T ss_pred cccccCCC-C-ccccccChHHhcCCC
Confidence 99999998 3 789999999999993
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=6.3e-31 Score=251.79 Aligned_cols=269 Identities=19% Similarity=0.206 Sum_probs=187.3
Q ss_pred CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCC
Q 038320 115 KHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQ 194 (467)
Q Consensus 115 ~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~ 194 (467)
++|++|++++|++++. .+..++++++|++|++++|.+++..|..+.++++|++|++++|.++.++... . ++|+
T Consensus 52 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~----~--~~L~ 124 (330)
T 1xku_A 52 PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM----P--KTLQ 124 (330)
T ss_dssp TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC----C--TTCC
T ss_pred CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhh----c--cccc
Confidence 6899999999999865 5668999999999999999999888999999999999999999999887652 2 7999
Q ss_pred EEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcc--cCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEe
Q 038320 195 YLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFE--FPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLD 272 (467)
Q Consensus 195 ~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 272 (467)
+|++++|.+.... ...+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++. +|..+. ++|+.|+
T Consensus 125 ~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~ 198 (330)
T 1xku_A 125 ELRVHENEITKVR---KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELH 198 (330)
T ss_dssp EEECCSSCCCBBC---HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEE
T ss_pred EEECCCCcccccC---HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEE
Confidence 9999999988765 3357778888888888888753 555667777777777777777653 443332 5566666
Q ss_pred ccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECc
Q 038320 273 LSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLG 352 (467)
Q Consensus 273 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~ 352 (467)
+++|.+++..+..+..+++|++|++++|.+ ++..+..+..++ +|++|+++
T Consensus 199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-------------------------~~~~~~~~~~l~-----~L~~L~L~ 248 (330)
T 1xku_A 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSI-------------------------SAVDNGSLANTP-----HLRELHLN 248 (330)
T ss_dssp CTTSCCCEECTGGGTTCTTCCEEECCSSCC-------------------------CEECTTTGGGST-----TCCEEECC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcC-------------------------ceeChhhccCCC-----CCCEEECC
Confidence 666655555455555555555555555554 433333333332 55566666
Q ss_pred CCCCCcCCCccccCCCCCCEEEccCCcCcccccccccC------CCCCCEEECcCCcCcc--cChhhhcCCCCCCEEeCc
Q 038320 353 QNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGN------LSSLRELYLHNNLMDG--TIPKSLGKLSHLVVLDIS 424 (467)
Q Consensus 353 ~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------~~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~l~ 424 (467)
+|+++ .+|..+..+++|++|++++|.+++..+..|.. .+.++.|++++|.+.. ..|..+..+++++.++++
T Consensus 249 ~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~ 327 (330)
T 1xku_A 249 NNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327 (330)
T ss_dssp SSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC-
T ss_pred CCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEec
Confidence 66555 44555666666777777777666544444432 3667788888887753 455677777888888888
Q ss_pred CCC
Q 038320 425 GNP 427 (467)
Q Consensus 425 ~n~ 427 (467)
+|+
T Consensus 328 ~N~ 330 (330)
T 1xku_A 328 NYK 330 (330)
T ss_dssp ---
T ss_pred ccC
Confidence 774
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2.4e-31 Score=254.91 Aligned_cols=275 Identities=20% Similarity=0.216 Sum_probs=198.2
Q ss_pred ccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChh
Q 038320 106 EISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVE 185 (467)
Q Consensus 106 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~ 185 (467)
.+|..+ .++|++|++++|.+++. .+..+.++++|++|++++|.+++..|..+.++++|++|++++|.++.++...
T Consensus 47 ~ip~~~--~~~l~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-- 121 (332)
T 2ft3_A 47 AVPKEI--SPDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL-- 121 (332)
T ss_dssp SCCSCC--CTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSC--
T ss_pred ccCCCC--CCCCeEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccc--
Confidence 344444 36899999999999865 5678999999999999999999888889999999999999999999888763
Q ss_pred hcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcc--cCCccccCCCCCcEEEccCCcCCCCcchhcc
Q 038320 186 WLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFE--FPPLSVVNFSSLLFLDLSSNDFNSSIPQWLL 263 (467)
Q Consensus 186 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 263 (467)
. ++|++|++++|.+..... ..+..+++|++|++++|.+.. ..+..+..+ +|++|++++|.+++ +|..+.
T Consensus 122 --~--~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~ 192 (332)
T 2ft3_A 122 --P--SSLVELRIHDNRIRKVPK---GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP 192 (332)
T ss_dssp --C--TTCCEEECCSSCCCCCCS---GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC
T ss_pred --c--ccCCEEECCCCccCccCH---hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc
Confidence 2 899999999999997763 357889999999999999964 667777777 99999999999985 555443
Q ss_pred CCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccC
Q 038320 264 NISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCAN 343 (467)
Q Consensus 264 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~ 343 (467)
++|+.|++++|.+++..+..+..+++|++|++++|.+ .+..+..+..+++|+.|++++|.++
T Consensus 193 --~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~--------------- 254 (332)
T 2ft3_A 193 --ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI-RMIENGSLSFLPTLRELHLDNNKLS--------------- 254 (332)
T ss_dssp --SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCC-CCCCTTGGGGCTTCCEEECCSSCCC---------------
T ss_pred --CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC-CcCChhHhhCCCCCCEEECCCCcCe---------------
Confidence 6777777777777766656666666677777666666 4444444555555555555555544
Q ss_pred CCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccC------CCCCCEEECcCCcCc--ccChhhhcCC
Q 038320 344 SSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGN------LSSLRELYLHNNLMD--GTIPKSLGKL 415 (467)
Q Consensus 344 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------~~~L~~L~Ls~n~l~--~~~p~~l~~l 415 (467)
.+|..+..+++|++|++++|.+++..+..+.. .+.|+.|++++|.+. +..|..+..+
T Consensus 255 ---------------~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l 319 (332)
T 2ft3_A 255 ---------------RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319 (332)
T ss_dssp ---------------BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTB
T ss_pred ---------------ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccccc
Confidence 33444455555555555555555433333332 355677777777765 4566667777
Q ss_pred CCCCEEeCcCCC
Q 038320 416 SHLVVLDISGNP 427 (467)
Q Consensus 416 ~~L~~L~l~~n~ 427 (467)
++|+.+++++|+
T Consensus 320 ~~L~~l~l~~n~ 331 (332)
T 2ft3_A 320 TDRLAIQFGNYK 331 (332)
T ss_dssp CCSTTEEC----
T ss_pred chhhhhhccccc
Confidence 777777777764
No 47
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.98 E-value=8.2e-32 Score=268.31 Aligned_cols=306 Identities=25% Similarity=0.303 Sum_probs=189.4
Q ss_pred cCCCCcccccccccCccccCCCCC-------------CEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccC
Q 038320 94 FTDNGTTYQLEGEISPSVLDLKHL-------------NYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSF 160 (467)
Q Consensus 94 ~~~~~~~~~l~~~~~~~l~~l~~L-------------~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l 160 (467)
+.++++++.+.|.+|..++++++| ++|++++|.+++ +|.. .++|++|++++|.+++ +|..
T Consensus 37 ~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~--lp~~---~~~L~~L~l~~n~l~~-lp~~- 109 (454)
T 1jl5_A 37 TEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS--LPEL---PPHLESLVASCNSLTE-LPEL- 109 (454)
T ss_dssp HHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC--CCSC---CTTCSEEECCSSCCSS-CCCC-
T ss_pred hhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc--CCCC---cCCCCEEEccCCcCCc-cccc-
Confidence 344555577777778777777654 888888887774 4442 3577788888777775 5543
Q ss_pred CCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccC
Q 038320 161 GNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVN 240 (467)
Q Consensus 161 ~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 240 (467)
+++|++|++++|.++.++.. .++|++|++++|.+++.. .+..+++|++|++++|++.+.+ ..
T Consensus 110 --~~~L~~L~l~~n~l~~l~~~-------~~~L~~L~L~~n~l~~lp-----~~~~l~~L~~L~l~~N~l~~lp-~~--- 171 (454)
T 1jl5_A 110 --PQSLKSLLVDNNNLKALSDL-------PPLLEYLGVSNNQLEKLP-----ELQNSSFLKIIDVDNNSLKKLP-DL--- 171 (454)
T ss_dssp --CTTCCEEECCSSCCSCCCSC-------CTTCCEEECCSSCCSSCC-----CCTTCTTCCEEECCSSCCSCCC-CC---
T ss_pred --cCCCcEEECCCCccCcccCC-------CCCCCEEECcCCCCCCCc-----ccCCCCCCCEEECCCCcCcccC-CC---
Confidence 35667777777666654431 156777777777666532 3666777777777777766532 22
Q ss_pred CCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEE
Q 038320 241 FSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDL 320 (467)
Q Consensus 241 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 320 (467)
..+|++|++++|.+++ +| .+.++++|+.|++++|.+++ +|.. .++|++|++++|.+ . .+| .++.+++|++|
T Consensus 172 ~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l-~-~lp-~~~~l~~L~~L 242 (454)
T 1jl5_A 172 PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNIL-E-ELP-ELQNLPFLTTI 242 (454)
T ss_dssp CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCC-S-SCC-CCTTCTTCCEE
T ss_pred cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcC-C-ccc-ccCCCCCCCEE
Confidence 2467777777776664 44 46666777777777776664 3321 24666666666666 2 444 36666677777
Q ss_pred eccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcc--ccccc-----------
Q 038320 321 DLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRG--SIPES----------- 387 (467)
Q Consensus 321 ~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~----------- 387 (467)
++++|.+++. |.. +++|++|++++|++++ +|.. +++|++|++++|.+++ .+|..
T Consensus 243 ~l~~N~l~~l-~~~--------~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l 309 (454)
T 1jl5_A 243 YADNNLLKTL-PDL--------PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI 309 (454)
T ss_dssp ECCSSCCSSC-CSC--------CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCC
T ss_pred ECCCCcCCcc-ccc--------ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcC
Confidence 7777666642 111 1255555555555553 2221 2445555555554443 11111
Q ss_pred --ccCC-CCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCCC
Q 038320 388 --IGNL-SSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAP 455 (467)
Q Consensus 388 --l~~~-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~ 455 (467)
+..+ ++|++|++++|++++ +|.. +++|++|++++|++++ +|. .+++|+.|++++|+++.
T Consensus 310 ~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~----~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 310 RSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE----LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp SEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSS
T ss_pred CcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc----hhhhccEEECCCCCCCc
Confidence 1122 478888888888875 5543 5889999999998874 554 36889999999998775
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=5.8e-35 Score=292.98 Aligned_cols=359 Identities=21% Similarity=0.158 Sum_probs=237.3
Q ss_pred CCCCccccccc----ccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCC----CCCEEEcCCCcCCC----CCCccCCC
Q 038320 95 TDNGTTYQLEG----EISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLE----KLRYLNLSGASFAG----NIPPSFGN 162 (467)
Q Consensus 95 ~~~~~~~~l~~----~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~----~L~~L~L~~n~l~~----~~p~~l~~ 162 (467)
.++++++.+++ .++..+..+++|++|++++|.+++.........++ +|++|++++|.++. .++..+..
T Consensus 32 ~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 111 (461)
T 1z7x_W 32 VVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT 111 (461)
T ss_dssp EEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTS
T ss_pred EEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHcc
Confidence 33444466654 34556777788888888888776432222223344 68888888887763 45667778
Q ss_pred CCcCCeeeccCccCCCCCCCChh-h-cCCCCCCCEEECCCcCCCCCCCc-hhhhcCCCCCCCEEECCCCcCcccCCcccc
Q 038320 163 LSSLQILDLNTFYYSSLESDDVE-W-LSRLSSLQYLNLEGVDLSKAGSS-WVQATNMLPSLSELHLPACGLFEFPPLSVV 239 (467)
Q Consensus 163 l~~L~~L~l~~n~~~~l~~~~~~-~-l~~l~~L~~L~L~~n~~~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 239 (467)
+++|++|++++|.+.......+. . ....++|++|++++|.+++.... +...+..+++|++|++++|.+.+..+..+.
T Consensus 112 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 191 (461)
T 1z7x_W 112 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLC 191 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH
T ss_pred CCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHH
Confidence 88888888888776532211111 1 22356788888888877664321 233445577888888888887665443333
Q ss_pred -----CCCCCcEEEccCCcCCCC----cchhccCCCCCCEEeccCCccccccc-----hhhhCCCCCCEEeCCCCCCCCC
Q 038320 240 -----NFSSLLFLDLSSNDFNSS----IPQWLLNISKLAHLDLSANNLQGNIP-----DAFANMTSLRELDLSENSLIGG 305 (467)
Q Consensus 240 -----~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~-----~~l~~l~~L~~L~L~~n~l~~~ 305 (467)
..++|++|++++|.+++. ++..+..+++|++|++++|.+.+... ..+..+++|++|++++|.+ ++
T Consensus 192 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l-~~ 270 (461)
T 1z7x_W 192 QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI-TA 270 (461)
T ss_dssp HHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC-CH
T ss_pred HHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCC-CH
Confidence 255888888888887764 46666777888888888887765322 2223577888888888877 33
Q ss_pred C----CcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcC----CCccccCCCCCCEEEccC
Q 038320 306 Q----IPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGF----LPNSLGQLENLKILQLWG 377 (467)
Q Consensus 306 ~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~ 377 (467)
. ++..+..+++|++|++++|.+++..+..+........++|++|++++|.+++. ++..+..+++|++|++++
T Consensus 271 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 350 (461)
T 1z7x_W 271 KGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 350 (461)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccC
Confidence 2 45566677888888888888877666666655433344788888888888754 455666778888888888
Q ss_pred CcCcccccccccC-----CCCCCEEECcCCcCcc----cChhhhcCCCCCCEEeCcCCCCcccCChh---hh-CCCCCCC
Q 038320 378 NLFRGSIPESIGN-----LSSLRELYLHNNLMDG----TIPKSLGKLSHLVVLDISGNPWIGLVTEV---HF-SKLKNLK 444 (467)
Q Consensus 378 n~l~~~~~~~l~~-----~~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~l~~n~~~~~~~~~---~~-~~l~~L~ 444 (467)
|.+++..+..+.. .++|++|++++|.+++ .+|..+..+++|++|++++|++++..... .+ .....|+
T Consensus 351 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~ 430 (461)
T 1z7x_W 351 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 430 (461)
T ss_dssp SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCC
T ss_pred CccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchh
Confidence 8887654444432 6788888888888876 67777778888888888888877542221 11 1234677
Q ss_pred EEeccCCCCC
Q 038320 445 ELHIAKYSLA 454 (467)
Q Consensus 445 ~l~l~~n~i~ 454 (467)
.|.+.++.+.
T Consensus 431 ~L~~~~~~~~ 440 (461)
T 1z7x_W 431 QLVLYDIYWS 440 (461)
T ss_dssp EEECTTCCCC
T ss_pred heeecccccC
Confidence 7877777554
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=1.9e-34 Score=289.31 Aligned_cols=357 Identities=21% Similarity=0.177 Sum_probs=274.3
Q ss_pred CEEEEEcCCCCCCCCcCCCCcccccccccCcc-ccCCCCCCEEeCCCCCCCCC---CCCcccCCCCCCCEEEcCCCcCCC
Q 038320 79 KVVQLKLRSPEIPDSFTDNGTTYQLEGEISPS-VLDLKHLNYLDLSLNNFRGS---RIPNFLGSLEKLRYLNLSGASFAG 154 (467)
Q Consensus 79 ~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~-l~~l~~L~~L~L~~n~i~~~---~~~~~~~~l~~L~~L~L~~n~l~~ 154 (467)
+++.+++++ +.++...... +..+++|++|++++|.+++. .++..+..+++|++|++++|.+.+
T Consensus 4 ~l~~L~Ls~-------------~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 70 (461)
T 1z7x_W 4 DIQSLDIQC-------------EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD 70 (461)
T ss_dssp EEEEEEEES-------------CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH
T ss_pred cceehhhhh-------------cccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh
Confidence 577888887 6676554433 78899999999999998753 256778889999999999999875
Q ss_pred CCCccC-CCCC----cCCeeeccCccCCCCCC-CChhhcCCCCCCCEEECCCcCCCCCCCchhh-h-cCCCCCCCEEECC
Q 038320 155 NIPPSF-GNLS----SLQILDLNTFYYSSLES-DDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQ-A-TNMLPSLSELHLP 226 (467)
Q Consensus 155 ~~p~~l-~~l~----~L~~L~l~~n~~~~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~-~-~~~l~~L~~L~l~ 226 (467)
..+..+ ..++ +|++|++++|.++.... .....+..+++|++|++++|.+++....... . ....++|++|+++
T Consensus 71 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 150 (461)
T 1z7x_W 71 VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLE 150 (461)
T ss_dssp HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECC
Confidence 433222 2344 79999999998764321 1133478999999999999998755322111 1 3346789999999
Q ss_pred CCcCcccC----CccccCCCCCcEEEccCCcCCCCcchhcc-----CCCCCCEEeccCCccccc----cchhhhCCCCCC
Q 038320 227 ACGLFEFP----PLSVVNFSSLLFLDLSSNDFNSSIPQWLL-----NISKLAHLDLSANNLQGN----IPDAFANMTSLR 293 (467)
Q Consensus 227 ~n~~~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~ 293 (467)
+|.+++.. +..+..+++|++|++++|.+++..+..+. ..++|+.|++++|.+++. ++..+..+++|+
T Consensus 151 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 230 (461)
T 1z7x_W 151 YCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 230 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred CCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCcc
Confidence 99998754 45566789999999999998765444443 367999999999999864 577788899999
Q ss_pred EEeCCCCCCCCCCC-----cccccCCCCCCEEeccCCcCCCch----hhHHHhhhcccCCCccEEECcCCCCCcCCCccc
Q 038320 294 ELDLSENSLIGGQI-----PKDLGSLCNLWDLDLSGNDLDGEI----IEFVDRLSKCANSSLESLDLGQNNLGGFLPNSL 364 (467)
Q Consensus 294 ~L~L~~n~l~~~~~-----~~~l~~l~~L~~L~l~~n~l~~~~----~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l 364 (467)
+|++++|.+ ++.. +..+..+++|++|++++|.+++.. +..+...+ +|++|++++|.+++..+..+
T Consensus 231 ~L~Ls~n~l-~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-----~L~~L~Ls~n~i~~~~~~~l 304 (461)
T 1z7x_W 231 ELALGSNKL-GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE-----SLKELSLAGNELGDEGARLL 304 (461)
T ss_dssp EEECCSSBC-HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT-----TCCEEECTTCCCHHHHHHHH
T ss_pred EEeccCCcC-ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC-----CcceEECCCCCCchHHHHHH
Confidence 999999988 4332 222346899999999999998764 34444444 89999999999976543333
Q ss_pred c-----CCCCCCEEEccCCcCccc----ccccccCCCCCCEEECcCCcCcccChhhhcC-----CCCCCEEeCcCCCCcc
Q 038320 365 G-----QLENLKILQLWGNLFRGS----IPESIGNLSSLRELYLHNNLMDGTIPKSLGK-----LSHLVVLDISGNPWIG 430 (467)
Q Consensus 365 ~-----~l~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~l~~n~~~~ 430 (467)
. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|++++
T Consensus 305 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred HHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 3 337999999999999875 5666778899999999999998776655543 7899999999999986
Q ss_pred ----cCChhhhCCCCCCCEEeccCCCCCC
Q 038320 431 ----LVTEVHFSKLKNLKELHIAKYSLAP 455 (467)
Q Consensus 431 ----~~~~~~~~~l~~L~~l~l~~n~i~~ 455 (467)
.++. .+..+++|+.|++++|+|++
T Consensus 385 ~~~~~l~~-~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 385 SSCSSLAA-TLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHHHH-HHHHCCCCCEEECCSSSCCH
T ss_pred hhHHHHHH-HHHhCCCccEEECCCCCCCH
Confidence 6676 67889999999999998874
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=6.5e-30 Score=247.10 Aligned_cols=262 Identities=24% Similarity=0.272 Sum_probs=177.9
Q ss_pred CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCC
Q 038320 115 KHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQ 194 (467)
Q Consensus 115 ~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~ 194 (467)
++|++|++++|.+++. .+..+.++++|++|++++|.+++..|..+.++++|++|++++|.++.++... +.++++|+
T Consensus 52 ~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~ 127 (353)
T 2z80_A 52 EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSW---FKPLSSLT 127 (353)
T ss_dssp TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHH---HTTCTTCS
T ss_pred ccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhH---hCCCccCC
Confidence 5899999999999854 4557899999999999999998777788999999999999999888766532 67788888
Q ss_pred EEECCCcCCCCCCCchhhhcCCCCCCCEEECCCC-cCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEec
Q 038320 195 YLNLEGVDLSKAGSSWVQATNMLPSLSELHLPAC-GLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDL 273 (467)
Q Consensus 195 ~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 273 (467)
+|++++|.++.... ...+..+++|++|++++| .+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 128 ~L~L~~n~l~~l~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 205 (353)
T 2z80_A 128 FLNLLGNPYKTLGE--TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205 (353)
T ss_dssp EEECTTCCCSSSCS--SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred EEECCCCCCcccCc--hhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecC
Confidence 88888888776542 024667778888888777 466666667777777788888777777666777777777777777
Q ss_pred cCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccc---cCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEE
Q 038320 274 SANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDL---GSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLD 350 (467)
Q Consensus 274 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l---~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~ 350 (467)
++|.+.......+..+++|+.|++++|.+ ++..+..+ .....++.++++++.+++....
T Consensus 206 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~----------------- 267 (353)
T 2z80_A 206 HMKQHILLLEIFVDVTSSVECLELRDTDL-DTFHFSELSTGETNSLIKKFTFRNVKITDESLF----------------- 267 (353)
T ss_dssp ECSCSTTHHHHHHHHTTTEEEEEEESCBC-TTCCCC------CCCCCCEEEEESCBCCHHHHH-----------------
T ss_pred CCCccccchhhhhhhcccccEEECCCCcc-ccccccccccccccchhhccccccccccCcchh-----------------
Confidence 77777543333345577777777777776 33322222 1233444444444444432111
Q ss_pred CcCCCCCcCCCccccCCCCCCEEEccCCcCccccccc-ccCCCCCCEEECcCCcCcccCh
Q 038320 351 LGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPES-IGNLSSLRELYLHNNLMDGTIP 409 (467)
Q Consensus 351 L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~~~~L~~L~Ls~n~l~~~~p 409 (467)
.+|..+..+++|++|++++|.++ .+|.. +..+++|++|++++|++.+..|
T Consensus 268 --------~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 268 --------QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp --------HHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred --------hhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 23445556666666666666666 34444 4566667777777776665443
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.8e-29 Score=242.61 Aligned_cols=282 Identities=25% Similarity=0.276 Sum_probs=176.2
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCC
Q 038320 111 VLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRL 190 (467)
Q Consensus 111 l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l 190 (467)
-..|+.....+.+++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.++.++... +.++
T Consensus 27 ~~~C~~~~~c~~~~~~l~--~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l 99 (353)
T 2z80_A 27 SLSCDRNGICKGSSGSLN--SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS---FSSL 99 (353)
T ss_dssp CCEECTTSEEECCSTTCS--SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT---TTTC
T ss_pred CCCCCCCeEeeCCCCCcc--ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhh---cCCC
Confidence 344556666788888877 4666554 47888888888888655557888888888888888777655432 4555
Q ss_pred CCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcc-hhccCCCCCC
Q 038320 191 SSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIP-QWLLNISKLA 269 (467)
Q Consensus 191 ~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~ 269 (467)
++|++|++++|.++.. .+..+.++++|++|++++|.+++..+ ..+.++++|+
T Consensus 100 ~~L~~L~Ls~n~l~~~---------------------------~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 100 GSLEHLDLSYNYLSNL---------------------------SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152 (353)
T ss_dssp TTCCEEECCSSCCSSC---------------------------CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred CCCCEEECCCCcCCcC---------------------------CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence 5666666665555543 33334444444444454444442211 2444555555
Q ss_pred EEeccCC-ccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccE
Q 038320 270 HLDLSAN-NLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLES 348 (467)
Q Consensus 270 ~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~ 348 (467)
.|++++| .+.+..+..+.++++|++|++++|.+ .+..+..+..+++|++|++++|.++......+...+ +|++
T Consensus 153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-----~L~~ 226 (353)
T 2z80_A 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL-QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS-----SVEC 226 (353)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC-CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTT-----TEEE
T ss_pred EEECCCCccccccCHHHccCCCCCCEEECCCCCc-CccCHHHHhccccCCeecCCCCccccchhhhhhhcc-----cccE
Confidence 5555555 23433444555666666666666665 444556666666777777777766544333333333 7777
Q ss_pred EECcCCCCCcCCCccc---cCCCCCCEEEccCCcCcc----cccccccCCCCCCEEECcCCcCcccChhh-hcCCCCCCE
Q 038320 349 LDLGQNNLGGFLPNSL---GQLENLKILQLWGNLFRG----SIPESIGNLSSLRELYLHNNLMDGTIPKS-LGKLSHLVV 420 (467)
Q Consensus 349 L~L~~n~i~~~~~~~l---~~l~~L~~L~l~~n~l~~----~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~ 420 (467)
|++++|.+++..+..+ .....++.++++++.+.+ .+|..+..+++|++|++++|+++ .+|.. +..+++|++
T Consensus 227 L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~ 305 (353)
T 2z80_A 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQK 305 (353)
T ss_dssp EEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred EECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCE
Confidence 8888777776543333 235567777777777665 35666777888888888888887 45544 477888888
Q ss_pred EeCcCCCCcccCC
Q 038320 421 LDISGNPWIGLVT 433 (467)
Q Consensus 421 L~l~~n~~~~~~~ 433 (467)
|++++|++.+..+
T Consensus 306 L~L~~N~~~~~~~ 318 (353)
T 2z80_A 306 IWLHTNPWDCSCP 318 (353)
T ss_dssp EECCSSCBCCCHH
T ss_pred EEeeCCCccCcCC
Confidence 8888888777654
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=8.8e-29 Score=236.23 Aligned_cols=227 Identities=22% Similarity=0.309 Sum_probs=156.9
Q ss_pred CCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeC
Q 038320 218 PSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDL 297 (467)
Q Consensus 218 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 297 (467)
++++.|++++|.+.. +|..+.++++|++|++++|.++ .+|..+.++++|+.|++++|.++ .+|..+.++++|++|++
T Consensus 81 ~~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCSS-CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCchh-cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 344455555554442 2334445555555555555555 55555555556666666666555 44555555666666666
Q ss_pred CCCCCCCCCCccccc---------CCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCC
Q 038320 298 SENSLIGGQIPKDLG---------SLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLE 368 (467)
Q Consensus 298 ~~n~l~~~~~~~~l~---------~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~ 368 (467)
++|.+ .+.+|..+. .+++|++|++++|.++ .+|..+..++ +|++|++++|.+++ +|..+..++
T Consensus 158 ~~n~~-~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~-----~L~~L~L~~N~l~~-l~~~l~~l~ 229 (328)
T 4fcg_A 158 RACPE-LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ-----NLKSLKIRNSPLSA-LGPAIHHLP 229 (328)
T ss_dssp EEETT-CCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCT-----TCCEEEEESSCCCC-CCGGGGGCT
T ss_pred CCCCC-ccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCC-----CCCEEEccCCCCCc-CchhhccCC
Confidence 65554 444444433 4778888888888777 5565565554 78888888888874 455678888
Q ss_pred CCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEec
Q 038320 369 NLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHI 448 (467)
Q Consensus 369 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l 448 (467)
+|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|. .+.++++|+.+++
T Consensus 230 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~-~l~~L~~L~~l~l 308 (328)
T 4fcg_A 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS-LIAQLPANCIILV 308 (328)
T ss_dssp TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG-GGGGSCTTCEEEC
T ss_pred CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH-HHhhccCceEEeC
Confidence 888888888888888888888888888888888888888888888888888888888888888888 7888888888888
Q ss_pred cCCCCCCC
Q 038320 449 AKYSLAPR 456 (467)
Q Consensus 449 ~~n~i~~~ 456 (467)
..+.+...
T Consensus 309 ~~~~~~~l 316 (328)
T 4fcg_A 309 PPHLQAQL 316 (328)
T ss_dssp CGGGSCC-
T ss_pred CHHHHHHH
Confidence 88766543
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=7.9e-29 Score=234.62 Aligned_cols=282 Identities=20% Similarity=0.178 Sum_probs=156.8
Q ss_pred CEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEE
Q 038320 118 NYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLN 197 (467)
Q Consensus 118 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~ 197 (467)
+.++.+++.++ .+|..+. ++|++|++++|.++...+..+.++++|++|++++|.++.+.... ..+..+++|++|+
T Consensus 10 ~~l~c~~~~l~--~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLT--SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS-QSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCS--SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEE-HHHHSCSCCCEEE
T ss_pred CEEEcCCCCcc--cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcc-cccccccccCEEE
Confidence 46777777766 3555443 57778888877777333334667777777777777665332110 1123344555555
Q ss_pred CCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcc-hhccCCCCCCEEeccCC
Q 038320 198 LEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIP-QWLLNISKLAHLDLSAN 276 (467)
Q Consensus 198 L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n 276 (467)
+++|.+. .. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|
T Consensus 85 Ls~n~i~---------------------------~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 136 (306)
T 2z66_A 85 LSFNGVI---------------------------TM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136 (306)
T ss_dssp CCSCSEE---------------------------EE-EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS
T ss_pred CCCCccc---------------------------cC-hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC
Confidence 5554443 22 2234444555555555554443322 34445555555555555
Q ss_pred ccccccchhhhCCCCCCEEeCCCCCCCCC-CCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCC
Q 038320 277 NLQGNIPDAFANMTSLRELDLSENSLIGG-QIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNN 355 (467)
Q Consensus 277 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~ 355 (467)
.+.+..+..+..+++|++|++++|.+ .+ ..|..+..+++|++|++++|.+++..+..+..++ +|++|++++|.
T Consensus 137 ~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~N~ 210 (306)
T 2z66_A 137 HTRVAFNGIFNGLSSLEVLKMAGNSF-QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-----SLQVLNMSHNN 210 (306)
T ss_dssp CCEECSTTTTTTCTTCCEEECTTCEE-GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT-----TCCEEECTTSC
T ss_pred cCCccchhhcccCcCCCEEECCCCcc-ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC-----CCCEEECCCCc
Confidence 55555555555555555666555555 22 3455555566666666666666555454444443 66666666666
Q ss_pred CCcCCCccccCCCCCCEEEccCCcCcccccccccCCC-CCCEEECcCCcCcccCh--hhhcCCCCCCEEeCcCCCCcccC
Q 038320 356 LGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLS-SLRELYLHNNLMDGTIP--KSLGKLSHLVVLDISGNPWIGLV 432 (467)
Q Consensus 356 i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~-~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~l~~n~~~~~~ 432 (467)
+++..+..+..+++|++|++++|.+++..|..+..++ +|++|++++|.+++.-. .....+.+.+.+.+..+.+....
T Consensus 211 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~ 290 (306)
T 2z66_A 211 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECAT 290 (306)
T ss_dssp CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEE
T ss_pred cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCC
Confidence 6655555666677777777777777766666666663 67777777777764321 11122233444455556666655
Q ss_pred ChhhhCC
Q 038320 433 TEVHFSK 439 (467)
Q Consensus 433 ~~~~~~~ 439 (467)
|. .+.+
T Consensus 291 p~-~~~g 296 (306)
T 2z66_A 291 PS-DKQG 296 (306)
T ss_dssp SG-GGTT
T ss_pred ch-hhCC
Confidence 55 3433
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.8e-28 Score=230.87 Aligned_cols=250 Identities=24% Similarity=0.263 Sum_probs=178.6
Q ss_pred CeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCccc--CCccccCCCCC
Q 038320 167 QILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEF--PPLSVVNFSSL 244 (467)
Q Consensus 167 ~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L 244 (467)
+.++.+++.++.+|... .++|++|++++|.++.... ..+..+++|++|++++|.+... .+..+..+++|
T Consensus 10 ~~l~c~~~~l~~ip~~~------~~~l~~L~L~~n~l~~i~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 80 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI------PSSATRLELESNKLQSLPH---GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL 80 (306)
T ss_dssp TEEECCSSCCSSCCSCC------CTTCCEEECCSSCCCCCCT---TTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCC
T ss_pred CEEEcCCCCcccCCCCC------CCCCCEEECCCCccCccCH---hHhhccccCCEEECCCCccCcccCccccccccccc
Confidence 57788888888877652 2578888888888876542 2466778888888888877643 24455667888
Q ss_pred cEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccc-hhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecc
Q 038320 245 LFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIP-DAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLS 323 (467)
Q Consensus 245 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~ 323 (467)
++|++++|.++ .+|..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+ .+..+..+..+++|++|+++
T Consensus 81 ~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 81 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMA 158 (306)
T ss_dssp CEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC-EECSTTTTTTCTTCCEEECT
T ss_pred CEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcC-CccchhhcccCcCCCEEECC
Confidence 88888888776 456667778888888888887775544 4677778888888888877 55666667777777888887
Q ss_pred CCcCCC-chhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCC
Q 038320 324 GNDLDG-EIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNN 402 (467)
Q Consensus 324 ~n~l~~-~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n 402 (467)
+|.+++ ..|..+..++ +|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 159 ~n~l~~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 159 GNSFQENFLPDIFTELR-----NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp TCEEGGGEECSCCTTCT-----TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred CCccccccchhHHhhCc-----CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence 777765 3444444444 7777777777777666677777777777777777777655556677777777777777
Q ss_pred cCcccChhhhcCCC-CCCEEeCcCCCCcccC
Q 038320 403 LMDGTIPKSLGKLS-HLVVLDISGNPWIGLV 432 (467)
Q Consensus 403 ~l~~~~p~~l~~l~-~L~~L~l~~n~~~~~~ 432 (467)
++++..|..+..++ +|++|++++|++.+..
T Consensus 234 ~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 234 HIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred CCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 77777777777764 7777777777776543
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=6.5e-28 Score=247.52 Aligned_cols=287 Identities=25% Similarity=0.281 Sum_probs=172.0
Q ss_pred CCCC-CCCCCCCcccEEe------cCCCCCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCC
Q 038320 57 LSSW-TGEDCCKWEGVIC------DNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRG 129 (467)
Q Consensus 57 ~~~w-~~~~~c~w~gv~c------~~~~~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~ 129 (467)
+..| .+.+||.|+|..| ......++.+++++ +.++ .+|..+. ++|++|++++|.++
T Consensus 12 w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~-------------n~L~-~lp~~l~--~~L~~L~L~~N~l~- 74 (622)
T 3g06_A 12 WSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGE-------------SGLT-TLPDCLP--AHITTLVIPDNNLT- 74 (622)
T ss_dssp HHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCS-------------SCCS-CCCSCCC--TTCSEEEECSCCCS-
T ss_pred HHHHHhcCCcchhccccccCcccccccCCCCcEEEecC-------------CCcC-ccChhhC--CCCcEEEecCCCCC-
Confidence 3456 3567899976322 11123477778877 5665 5565554 78888888888877
Q ss_pred CCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCc
Q 038320 130 SRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSS 209 (467)
Q Consensus 130 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~ 209 (467)
.+|. .+++|++|++++|.++ .+|. .+++|++|++++|.++.++. .+++|+.|++++|.++....
T Consensus 75 -~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l~~-------~l~~L~~L~L~~N~l~~lp~- 138 (622)
T 3g06_A 75 -SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQLTSLPV- 138 (622)
T ss_dssp -CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCCCCC-------CCTTCCEEECCSSCCSCCCC-
T ss_pred -CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCCCCC-------CCCCcCEEECCCCCCCcCCC-
Confidence 3555 4678888888888877 4555 66788888888888777654 35677777777777766432
Q ss_pred hhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCC
Q 038320 210 WVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANM 289 (467)
Q Consensus 210 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 289 (467)
.+++|++|++++|.+.+.+. .+++|+.|++++|.+++ +| ..+++|+.|++++|.+++ +|. .+
T Consensus 139 ------~l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~ 200 (622)
T 3g06_A 139 ------LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LP 200 (622)
T ss_dssp ------CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CC
T ss_pred ------CCCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---cc
Confidence 13667777777777665432 23566667777766653 34 344666666666666653 332 23
Q ss_pred CCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCC
Q 038320 290 TSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLEN 369 (467)
Q Consensus 290 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~ 369 (467)
++|+.|++++|.+ . .+|. .+++|+.|++++|.+++. | . .+++|+.|++++|.++. +|. .+++
T Consensus 201 ~~L~~L~L~~N~l-~-~l~~---~~~~L~~L~Ls~N~L~~l-p---~-----~l~~L~~L~Ls~N~L~~-lp~---~~~~ 262 (622)
T 3g06_A 201 SELYKLWAYNNRL-T-SLPA---LPSGLKELIVSGNRLTSL-P---V-----LPSELKELMVSGNRLTS-LPM---LPSG 262 (622)
T ss_dssp TTCCEEECCSSCC-S-SCCC---CCTTCCEEECCSSCCSCC-C---C-----CCTTCCEEECCSSCCSC-CCC---CCTT
T ss_pred chhhEEECcCCcc-c-ccCC---CCCCCCEEEccCCccCcC-C---C-----CCCcCcEEECCCCCCCc-CCc---cccc
Confidence 5666666666665 2 3332 235566666666655542 1 1 11255666666665553 232 3455
Q ss_pred CCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhc
Q 038320 370 LKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLG 413 (467)
Q Consensus 370 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~ 413 (467)
|+.|++++|.++ .+|..+..+++|+.|+|++|++++..|..+.
T Consensus 263 L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 556666665555 4455555555566666666655555555443
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=7.7e-28 Score=225.39 Aligned_cols=249 Identities=24% Similarity=0.230 Sum_probs=158.0
Q ss_pred CCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCc-CCCCcchhccCCCCCCE
Q 038320 192 SLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSND-FNSSIPQWLLNISKLAH 270 (467)
Q Consensus 192 ~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~ 270 (467)
+|++|++++|.++...+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|. +....+..+..+++|+.
T Consensus 33 ~l~~L~l~~n~i~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPA---ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp TCSEEECTTSCCCEECT---TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CceEEEeeCCcCCccCH---HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 44444444444443321 134555666666666666666656666666777777777765 55444666666777777
Q ss_pred EeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEE
Q 038320 271 LDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLD 350 (467)
Q Consensus 271 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~ 350 (467)
|++++|.+++..+..+.++++|++|++++|.+ .+..+..+..+++|++|++++|.+++..+..+..+. +|++|+
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~ 183 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH-----SLDRLL 183 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-----TCCEEE
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcc-cccCHhHhccCCCccEEECCCCcccccCHHHhcCcc-----ccCEEE
Confidence 77777777666666667777777777777776 444445566777777777777777655554454444 777777
Q ss_pred CcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcc
Q 038320 351 LGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIG 430 (467)
Q Consensus 351 L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~ 430 (467)
+++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+....+.. .....++.+..+.+.+..
T Consensus 184 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c 262 (285)
T 1ozn_A 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPC 262 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBE
T ss_pred CCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCcccc
Confidence 7777777777777777888888888888887655566777888888888888776543211 111224444566677777
Q ss_pred cCChhhhCC--CCCCCEEeccCC
Q 038320 431 LVTEVHFSK--LKNLKELHIAKY 451 (467)
Q Consensus 431 ~~~~~~~~~--l~~L~~l~l~~n 451 (467)
..|. .+.+ +..++..++.+|
T Consensus 263 ~~p~-~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 263 SLPQ-RLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp EESG-GGTTCBGGGSCGGGSCCC
T ss_pred CCch-HhCCcChhhcCHHHhccC
Confidence 7776 3433 344555566655
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.8e-27 Score=222.89 Aligned_cols=244 Identities=22% Similarity=0.229 Sum_probs=194.2
Q ss_pred CEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEec
Q 038320 194 QYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDL 273 (467)
Q Consensus 194 ~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 273 (467)
+.++.+++.++.... ...++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.++++|+.|++
T Consensus 14 ~~~~c~~~~l~~ip~------~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV------GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87 (285)
T ss_dssp CEEECCSSCCSSCCT------TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred eEEEcCcCCcccCCc------CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence 455566555554431 12468999999999999988888899999999999999988777888889999999999
Q ss_pred cCCc-cccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECc
Q 038320 274 SANN-LQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLG 352 (467)
Q Consensus 274 ~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~ 352 (467)
++|. +....+..+..+++|++|++++|.+ .+..+..+..+++|++|++++|.+++..+..+..++ +|++|+++
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~l~ 161 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG-----NLTHLFLH 161 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCCEEECC
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCCcC-CEECHhHhhCCcCCCEEECCCCcccccCHhHhccCC-----CccEEECC
Confidence 9997 7766678888899999999999988 666677788899999999999988876666666655 89999999
Q ss_pred CCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccC
Q 038320 353 QNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLV 432 (467)
Q Consensus 353 ~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~ 432 (467)
+|++++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++....
T Consensus 162 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred CCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence 99888776667888899999999999988887888888899999999999988777777888899999999999887655
Q ss_pred ChhhhCCCCCCCEEeccCC
Q 038320 433 TEVHFSKLKNLKELHIAKY 451 (467)
Q Consensus 433 ~~~~~~~l~~L~~l~l~~n 451 (467)
+...+ ...++.+..+.+
T Consensus 242 ~~~~~--~~~l~~~~~~~~ 258 (285)
T 1ozn_A 242 RARPL--WAWLQKFRGSSS 258 (285)
T ss_dssp GGHHH--HHHHHHCCSEEC
T ss_pred CcHHH--HHHHHhcccccC
Confidence 43211 123444445555
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=7e-27 Score=233.45 Aligned_cols=247 Identities=24% Similarity=0.240 Sum_probs=167.7
Q ss_pred CCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCC
Q 038320 142 LRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLS 221 (467)
Q Consensus 142 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~ 221 (467)
.+.++.++..++ .+|..+. +++++|++++|.++.++... +.++++|++|++++|.+++..+ ..+..+++|+
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~---~~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~ 126 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADT---FRHLHHLEVLQLGRNSIRQIEV---GAFNGLASLN 126 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTT---TTTCTTCCEEECCSSCCCEECT---TTTTTCTTCC
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHH---cCCCCCCCEEECCCCccCCcCh---hhccCcccCC
Confidence 457777777776 5676553 67888888888887765543 6677788888888887776542 3566777777
Q ss_pred EEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCcccccc-chhhhCCCCCCEEeCCCC
Q 038320 222 ELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNI-PDAFANMTSLRELDLSEN 300 (467)
Q Consensus 222 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n 300 (467)
+|++++|.+.+.++..+..+++|++|++++|.++...+..+.++++|+.|++++|...+.+ +..+.++++|++|++++|
T Consensus 127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence 7777777777777666777777777777777776555556677777777777774433333 335667777777777777
Q ss_pred CCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcC
Q 038320 301 SLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLF 380 (467)
Q Consensus 301 ~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l 380 (467)
.+ . .+| .+..+++|+.|++++|.+++..+..+..+. +|+.|++++|++++..+..+..+++|++|++++|.+
T Consensus 207 ~l-~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 207 NI-K-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLS-----SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278 (452)
T ss_dssp CC-S-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCT-----TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cc-c-ccc-cccccccccEEECcCCcCcccCcccccCcc-----CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence 76 2 233 356666777777777776666666555554 667777777776666666666666777777777766
Q ss_pred cccccccccCCCCCCEEECcCCcCc
Q 038320 381 RGSIPESIGNLSSLRELYLHNNLMD 405 (467)
Q Consensus 381 ~~~~~~~l~~~~~L~~L~Ls~n~l~ 405 (467)
++..+..+..+++|+.|+|++|.+.
T Consensus 279 ~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 279 SSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp SCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CccChHHhccccCCCEEEccCCCcC
Confidence 6555555666666777777666654
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=7.1e-27 Score=232.56 Aligned_cols=247 Identities=25% Similarity=0.271 Sum_probs=166.7
Q ss_pred CCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCC
Q 038320 142 LRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLS 221 (467)
Q Consensus 142 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~ 221 (467)
.+.++.++..++ .+|..+. ++++.|++++|.+..++... +.++++|++|++++|.+.... ...+..+++|+
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~---~~~l~~L~~L~Ls~n~i~~i~---~~~~~~l~~L~ 115 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNS---FKHLRHLEILQLSRNHIRTIE---IGAFNGLANLN 115 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTT---TSSCSSCCEEECCSSCCCEEC---GGGGTTCSSCC
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHH---hhCCCCCCEEECCCCcCCccC---hhhccCCccCC
Confidence 456777777776 6776554 67888888888888776543 677778888888888777654 23566777777
Q ss_pred EEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCcccccc-chhhhCCCCCCEEeCCCC
Q 038320 222 ELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNI-PDAFANMTSLRELDLSEN 300 (467)
Q Consensus 222 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n 300 (467)
+|++++|++++..+..+..+++|++|++++|.++...+..+.++++|+.|++++|...+.+ +..+.++++|++|++++|
T Consensus 116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred EEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence 7777777777776666777777777777777776555556677777777777774433333 335667777777777777
Q ss_pred CCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcC
Q 038320 301 SLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLF 380 (467)
Q Consensus 301 ~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l 380 (467)
.+ ..+| .+..+++|+.|++++|.+++..+..+..+. +|+.|++++|++++..+..+..+++|++|++++|.+
T Consensus 196 ~l--~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 196 NL--REIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLM-----HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp CC--SSCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCT-----TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred cC--cccc-ccCCCcccCEEECCCCccCccChhhhccCc-----cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence 76 2333 355666677777776666665555555544 666666666666666666666666666666666666
Q ss_pred cccccccccCCCCCCEEECcCCcCc
Q 038320 381 RGSIPESIGNLSSLRELYLHNNLMD 405 (467)
Q Consensus 381 ~~~~~~~l~~~~~L~~L~Ls~n~l~ 405 (467)
++..+..+..+++|+.|+|++|.+.
T Consensus 268 ~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 268 TLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CccChhHhccccCCCEEEcCCCCcc
Confidence 6555555566666666666666654
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=5.3e-27 Score=234.32 Aligned_cols=249 Identities=23% Similarity=0.206 Sum_probs=163.6
Q ss_pred cCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCC
Q 038320 165 SLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSL 244 (467)
Q Consensus 165 ~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 244 (467)
....++.++..++.+|.. + .+++++|++++|.++...+ ..+..+++|++|++++|.+.+..+..+.++++|
T Consensus 55 ~~~~v~c~~~~l~~iP~~----~--~~~l~~L~L~~n~i~~~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 125 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQG----I--PSNTRYLNLMENNIQMIQA---DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASL 125 (452)
T ss_dssp SSCEEECCSSCCSSCCSC----C--CTTCSEEECCSSCCCEECT---TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCcEEEECCCCcCccCCC----C--CCCccEEECcCCcCceECH---HHcCCCCCCCEEECCCCccCCcChhhccCcccC
Confidence 346778888888877765 2 2578888888888776653 356777788888888888877777777777888
Q ss_pred cEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccC
Q 038320 245 LFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSG 324 (467)
Q Consensus 245 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~ 324 (467)
++|++++|.+++..+..+.++++|+.|++++|.+++..+..+.++++|+.|++++|.......+..+..+++|++|++++
T Consensus 126 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 205 (452)
T 3zyi_A 126 NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205 (452)
T ss_dssp CEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC
Confidence 88888888777655566777777888888877777655666777777777777775442333333566667777777777
Q ss_pred CcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcC
Q 038320 325 NDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLM 404 (467)
Q Consensus 325 n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l 404 (467)
|.+++.. .+.. +++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|+|++|++
T Consensus 206 n~l~~~~--~~~~-----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 206 CNIKDMP--NLTP-----LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278 (452)
T ss_dssp SCCSSCC--CCTT-----CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred Ccccccc--cccc-----cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence 7666431 1222 22566666666666655555666666666666666666655555566666666666666666
Q ss_pred cccChhhhcCCCCCCEEeCcCCCCc
Q 038320 405 DGTIPKSLGKLSHLVVLDISGNPWI 429 (467)
Q Consensus 405 ~~~~p~~l~~l~~L~~L~l~~n~~~ 429 (467)
++..+..+..+++|+.|++++|++.
T Consensus 279 ~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 279 SSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp SCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CccChHHhccccCCCEEEccCCCcC
Confidence 5544455555666666666666554
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1e-26 Score=231.39 Aligned_cols=250 Identities=22% Similarity=0.218 Sum_probs=187.1
Q ss_pred cCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCC
Q 038320 165 SLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSL 244 (467)
Q Consensus 165 ~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 244 (467)
..+.++.++..++.+|.. + .++++.|++++|.+....+ ..+..+++|++|++++|.+.+..+..|.++++|
T Consensus 44 ~~~~v~c~~~~l~~iP~~----~--~~~l~~L~L~~n~i~~~~~---~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L 114 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDG----I--STNTRLLNLHENQIQIIKV---NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114 (440)
T ss_dssp TSCEEECCSCCCSSCCSC----C--CTTCSEEECCSCCCCEECT---TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSC
T ss_pred CCCEEEeCCCCcCcCCCC----C--CCCCcEEEccCCcCCeeCH---HHhhCCCCCCEEECCCCcCCccChhhccCCccC
Confidence 356788888888888865 2 2678888998888877653 367788888888888888888888888888888
Q ss_pred cEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccC
Q 038320 245 LFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSG 324 (467)
Q Consensus 245 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~ 324 (467)
++|++++|.+++..+..+.++++|+.|++++|.+++..+..+..+++|++|++++|.......+..+..+++|++|++++
T Consensus 115 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp CEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred CEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence 88888888888666667888888888888888888666667888888888888885542333344677788888888888
Q ss_pred CcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcC
Q 038320 325 NDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLM 404 (467)
Q Consensus 325 n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l 404 (467)
|.++.. |. +.. .++|++|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|+.|+|++|++
T Consensus 195 n~l~~~-~~-~~~-----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 195 CNLREI-PN-LTP-----LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp SCCSSC-CC-CTT-----CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred CcCccc-cc-cCC-----CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence 877643 21 222 23777777777777776677777777777777777777776667777777777777777777
Q ss_pred cccChhhhcCCCCCCEEeCcCCCCcc
Q 038320 405 DGTIPKSLGKLSHLVVLDISGNPWIG 430 (467)
Q Consensus 405 ~~~~p~~l~~l~~L~~L~l~~n~~~~ 430 (467)
++..+..+..+++|+.|++++|++..
T Consensus 268 ~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 268 TLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CccChhHhccccCCCEEEcCCCCccC
Confidence 76666666777777777777777653
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=1.2e-25 Score=230.76 Aligned_cols=267 Identities=24% Similarity=0.295 Sum_probs=223.5
Q ss_pred CCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCC
Q 038320 114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSL 193 (467)
Q Consensus 114 l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L 193 (467)
..++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++.++. .+++|
T Consensus 39 ~~~l~~L~ls~n~L~--~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~-------~l~~L 103 (622)
T 3g06_A 39 NNGNAVLNVGESGLT--TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV-------LPPGL 103 (622)
T ss_dssp HHCCCEEECCSSCCS--CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCCC-------CCTTC
T ss_pred CCCCcEEEecCCCcC--ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCCC-------CCCCC
Confidence 346999999999998 4787665 89999999999998 6666 67899999999999988775 57899
Q ss_pred CEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEec
Q 038320 194 QYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDL 273 (467)
Q Consensus 194 ~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 273 (467)
++|++++|.++.... .+++|+.|++++|.+++.+. .+++|++|++++|.+++ +|. .+++|+.|++
T Consensus 104 ~~L~Ls~N~l~~l~~-------~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L 168 (622)
T 3g06_A 104 LELSIFSNPLTHLPA-------LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLAS-LPA---LPSELCKLWA 168 (622)
T ss_dssp CEEEECSCCCCCCCC-------CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CEEECcCCcCCCCCC-------CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCC-cCC---ccCCCCEEEC
Confidence 999999999988642 57899999999999988654 24899999999999985 444 3578999999
Q ss_pred cCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcC
Q 038320 274 SANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQ 353 (467)
Q Consensus 274 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~ 353 (467)
++|.+++ +| ..+++|+.|++++|.+ . .+|. .+++|+.|++++|.++... .. +++|+.|++++
T Consensus 169 ~~N~l~~-l~---~~~~~L~~L~Ls~N~l-~-~l~~---~~~~L~~L~L~~N~l~~l~-~~--------~~~L~~L~Ls~ 230 (622)
T 3g06_A 169 YNNQLTS-LP---MLPSGLQELSVSDNQL-A-SLPT---LPSELYKLWAYNNRLTSLP-AL--------PSGLKELIVSG 230 (622)
T ss_dssp CSSCCSC-CC---CCCTTCCEEECCSSCC-S-CCCC---CCTTCCEEECCSSCCSSCC-CC--------CTTCCEEECCS
T ss_pred CCCCCCC-Cc---ccCCCCcEEECCCCCC-C-CCCC---ccchhhEEECcCCcccccC-CC--------CCCCCEEEccC
Confidence 9999985 55 4678999999999998 3 3444 3479999999999988533 21 24899999999
Q ss_pred CCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCC
Q 038320 354 NNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVT 433 (467)
Q Consensus 354 n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~ 433 (467)
|++++ +| ..+++|++|++++|.++ .+|. .+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++.++
T Consensus 231 N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 231 NRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp SCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred CccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 99986 44 56789999999999998 5666 6789999999999998 789999999999999999999998877
Q ss_pred hhhhC
Q 038320 434 EVHFS 438 (467)
Q Consensus 434 ~~~~~ 438 (467)
. .+.
T Consensus 302 ~-~l~ 305 (622)
T 3g06_A 302 Q-ALR 305 (622)
T ss_dssp H-HHH
T ss_pred H-HHH
Confidence 6 443
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.7e-28 Score=232.77 Aligned_cols=205 Identities=22% Similarity=0.171 Sum_probs=115.4
Q ss_pred CCCCCcEEEccCCcCCCCcchhc--cCCCCCCEEeccCCccccccchhhhCC-----CCCCEEeCCCCCCCCCCCccccc
Q 038320 240 NFSSLLFLDLSSNDFNSSIPQWL--LNISKLAHLDLSANNLQGNIPDAFANM-----TSLRELDLSENSLIGGQIPKDLG 312 (467)
Q Consensus 240 ~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~~~~l~ 312 (467)
++++|++|++++|.+++.+|..+ ..+++|+.|++++|.+++. |..++.+ ++|++|++++|++ .+..+..++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSC-CCCCTTTCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCC-ccchHHHhc
Confidence 35555555555555555555543 5555556666655555544 4444444 5666666666665 444445555
Q ss_pred CCCCCCEEeccCCcCCCch--hhHHHhhhcccCCCccEEECcCCCCCcC---CCccccCCCCCCEEEccCCcCccccc-c
Q 038320 313 SLCNLWDLDLSGNDLDGEI--IEFVDRLSKCANSSLESLDLGQNNLGGF---LPNSLGQLENLKILQLWGNLFRGSIP-E 386 (467)
Q Consensus 313 ~l~~L~~L~l~~n~l~~~~--~~~l~~~~~~~~~~L~~L~L~~n~i~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~-~ 386 (467)
.+++|++|++++|.+.+.. +..+ ....+++|++|++++|++++. ....+..+++|++|++++|.+++..| .
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 247 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISAL---CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHS---CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred cCCCCCEEECCCCCcCcchHHHHHH---HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh
Confidence 6666666666666655432 1111 111223566666666666521 11233455666666666666665543 3
Q ss_pred cccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCCC
Q 038320 387 SIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAP 455 (467)
Q Consensus 387 ~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~ 455 (467)
.+..+++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus 248 ~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~--~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS--PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC--TTTSCEEEEEECTTCTTTC
T ss_pred hhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh--HhhCCCCCEEeccCCCCCC
Confidence 3445666777777777766 5565554 6677777777776655 33 5666777777777776653
No 64
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=4.4e-29 Score=258.15 Aligned_cols=334 Identities=13% Similarity=0.095 Sum_probs=221.8
Q ss_pred CCCCCCEEeCCCCCCCCCC---CCcccCCCCCCCEEEcCCCcCC----CCCCccCCCCCcCCeeeccCccCCCCCCCChh
Q 038320 113 DLKHLNYLDLSLNNFRGSR---IPNFLGSLEKLRYLNLSGASFA----GNIPPSFGNLSSLQILDLNTFYYSSLESDDVE 185 (467)
Q Consensus 113 ~l~~L~~L~L~~n~i~~~~---~~~~~~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~ 185 (467)
.+++|++|+|++|.+++.. ++.....+++|++|++++|.++ +.++..+.++++|++|++++|.+..++.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~---- 237 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG---- 237 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHH----
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHH----
Confidence 5566666666666554331 1223344556666666666554 1223333455666666666655544332
Q ss_pred hcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcc-hhccC
Q 038320 186 WLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIP-QWLLN 264 (467)
Q Consensus 186 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~ 264 (467)
.+..+++|++|+++..............+..+++|+.|+++++. ....+..+..+++|++|++++|.+++... ..+.+
T Consensus 238 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~ 316 (592)
T 3ogk_B 238 FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQK 316 (592)
T ss_dssp HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTT
T ss_pred HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHh
Confidence 24556666666665432221111223455667778888777643 33345566778899999999998765433 44678
Q ss_pred CCCCCEEeccCCccccccchhhhCCCCCCEEeCCC-----------CCCCCCC-CcccccCCCCCCEEeccCCcCCCchh
Q 038320 265 ISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSE-----------NSLIGGQ-IPKDLGSLCNLWDLDLSGNDLDGEII 332 (467)
Q Consensus 265 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~-----------n~l~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~ 332 (467)
+++|+.|+++++...+.++.....+++|++|++++ +.+ ++. +......+++|++|+++.+.+++..+
T Consensus 317 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~-~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~ 395 (592)
T 3ogk_B 317 CPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV-SQRGLIALAQGCQELEYMAVYVSDITNESL 395 (592)
T ss_dssp CTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC-CHHHHHHHHHHCTTCSEEEEEESCCCHHHH
T ss_pred CcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCcc-CHHHHHHHHhhCccCeEEEeecCCccHHHH
Confidence 89999999984433334455557789999999994 444 322 33334568999999999999998877
Q ss_pred hHHHhhhcccCCCccEEECc----CCCCCcC-----CCccccCCCCCCEEEccCCc--Cccccccccc-CCCCCCEEECc
Q 038320 333 EFVDRLSKCANSSLESLDLG----QNNLGGF-----LPNSLGQLENLKILQLWGNL--FRGSIPESIG-NLSSLRELYLH 400 (467)
Q Consensus 333 ~~l~~~~~~~~~~L~~L~L~----~n~i~~~-----~~~~l~~l~~L~~L~l~~n~--l~~~~~~~l~-~~~~L~~L~Ls 400 (467)
..+.... ++|+.|+++ .|.+++. ++..+..+++|++|++++|. +++..+..+. .+++|++|+++
T Consensus 396 ~~l~~~~----~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~ 471 (592)
T 3ogk_B 396 ESIGTYL----KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLG 471 (592)
T ss_dssp HHHHHHC----CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEEC
T ss_pred HHHHhhC----CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeecc
Confidence 7776521 389999996 5677753 33346678999999998654 6665555544 48999999999
Q ss_pred CCcCccc-ChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCCCC
Q 038320 401 NNLMDGT-IPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPR 456 (467)
Q Consensus 401 ~n~l~~~-~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~~ 456 (467)
+|.+++. ++..+..+++|++|++++|++++.........+++|+.|++++|++++.
T Consensus 472 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 472 YVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp SCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 9999874 5566688999999999999987654443456789999999999998754
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.6e-28 Score=233.02 Aligned_cols=203 Identities=22% Similarity=0.289 Sum_probs=141.5
Q ss_pred CCCCCEEECCCCcCcccCCccc--cCCCCCcEEEccCCcCCCCcchhccCC-----CCCCEEeccCCccccccchhhhCC
Q 038320 217 LPSLSELHLPACGLFEFPPLSV--VNFSSLLFLDLSSNDFNSSIPQWLLNI-----SKLAHLDLSANNLQGNIPDAFANM 289 (467)
Q Consensus 217 l~~L~~L~l~~n~~~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~l~~l 289 (467)
+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..++.+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 3444444444444444444433 5566666666666666654 5545444 677777777777766666667777
Q ss_pred CCCCEEeCCCCCCCCCC--Ccccc--cCCCCCCEEeccCCcCCCch--h-hHHHhhhcccCCCccEEECcCCCCCcCCC-
Q 038320 290 TSLRELDLSENSLIGGQ--IPKDL--GSLCNLWDLDLSGNDLDGEI--I-EFVDRLSKCANSSLESLDLGQNNLGGFLP- 361 (467)
Q Consensus 290 ~~L~~L~L~~n~l~~~~--~~~~l--~~l~~L~~L~l~~n~l~~~~--~-~~l~~~~~~~~~~L~~L~L~~n~i~~~~~- 361 (467)
++|++|++++|++ .+. .+..+ ..+++|++|++++|.+++.. + ..+..+ ++|++|++++|++++..|
T Consensus 173 ~~L~~L~Ls~N~l-~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l-----~~L~~L~Ls~N~l~~~~~~ 246 (312)
T 1wwl_A 173 PALSTLDLSDNPE-LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR-----VQLQGLDLSHNSLRDAAGA 246 (312)
T ss_dssp SSCCEEECCSCTT-CHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT-----CCCSEEECTTSCCCSSCCC
T ss_pred CCCCEEECCCCCc-CcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC-----CCCCEEECCCCcCCcccch
Confidence 7777777777765 332 22233 67788888888888887422 2 122233 389999999999988764
Q ss_pred ccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCccc
Q 038320 362 NSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGL 431 (467)
Q Consensus 362 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~ 431 (467)
..+..+++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++.
T Consensus 247 ~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 247 PSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred hhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 45667899999999999998 7787766 8999999999999865 65 88999999999999998763
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=6.6e-28 Score=229.30 Aligned_cols=249 Identities=22% Similarity=0.191 Sum_probs=137.0
Q ss_pred cccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCC
Q 038320 101 YQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLE 180 (467)
Q Consensus 101 ~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~ 180 (467)
+.+...+...+..+++|++|++++|.+++. .|..+.++++|++|++++|.+++..+ +..+++|++|++++|.++.++
T Consensus 20 ~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~ 96 (317)
T 3o53_A 20 SSLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL 96 (317)
T ss_dssp TTHHHHHHHHHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE
T ss_pred cchhhhHHHHhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc
Confidence 445444444455667788888888877754 55677777788888888777764433 667777777777776654422
Q ss_pred CCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcch
Q 038320 181 SDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQ 260 (467)
Q Consensus 181 ~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 260 (467)
..++ |++|++++|.+.+..+. .+++|++|++++|.+++..+.
T Consensus 97 --------~~~~---------------------------L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~ 138 (317)
T 3o53_A 97 --------VGPS---------------------------IETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDL 138 (317)
T ss_dssp --------ECTT---------------------------CCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGB
T ss_pred --------CCCC---------------------------cCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccch
Confidence 2234 44444444444443322 245566666666666655555
Q ss_pred hccCCCCCCEEeccCCccccccchhh-hCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhh
Q 038320 261 WLLNISKLAHLDLSANNLQGNIPDAF-ANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLS 339 (467)
Q Consensus 261 ~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~ 339 (467)
.+..+++|+.|++++|.+++..+..+ ..+++|++|++++|.+ ++ ++ ....+++|++|++++|.+++..+. +..++
T Consensus 139 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l-~~-~~-~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~ 214 (317)
T 3o53_A 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YD-VK-GQVVFAKLKTLDLSSNKLAFMGPE-FQSAA 214 (317)
T ss_dssp CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-CE-EE-CCCCCTTCCEEECCSSCCCEECGG-GGGGT
T ss_pred hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC-cc-cc-cccccccCCEEECCCCcCCcchhh-hcccC
Confidence 55566666666666666665555444 3566677777777666 22 22 122355555555555555533222 22222
Q ss_pred cccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCc-ccccccccCCCCCCEEECc
Q 038320 340 KCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFR-GSIPESIGNLSSLRELYLH 400 (467)
Q Consensus 340 ~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~~~~L~~L~Ls 400 (467)
+|++|++++|++++ +|..+..+++|+.|++++|.+. +.++..+..+++|+.++++
T Consensus 215 -----~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 215 -----GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp -----TCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred -----cccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 45555555555542 3334444455555555555544 3444444444444444444
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=2.9e-25 Score=206.05 Aligned_cols=218 Identities=25% Similarity=0.305 Sum_probs=135.4
Q ss_pred CCCCCcccEEecCCCCCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCC
Q 038320 63 EDCCKWEGVICDNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKL 142 (467)
Q Consensus 63 ~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L 142 (467)
.++|.|.|+.|... +.++.+++++ +.++. +|..+. +++++|++++|++++. .+..+.++++|
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~-------------~~l~~-ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L 63 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSS-------------KKLTA-IPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKL 63 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTT-------------SCCSS-CCSCCC--TTCSEEECCSSCCSCC-CTTSSSSCTTC
T ss_pred CccCCCCCCCCEeC-CCCCEEEccC-------------CCCCc-cCCCCC--CCCCEEECcCCCCCee-CHHHhcCCCCC
Confidence 47899999888632 3456677776 55553 444333 5788888888887754 45577778888
Q ss_pred CEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCE
Q 038320 143 RYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSE 222 (467)
Q Consensus 143 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~ 222 (467)
++|++++|.++...+..+.++++|++|++++|.+..++... +..+++|++|++++|.+
T Consensus 64 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l------------------- 121 (270)
T 2o6q_A 64 RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGV---FDQLVNLAELRLDRNQL------------------- 121 (270)
T ss_dssp CEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTT---TTTCSSCCEEECCSSCC-------------------
T ss_pred CEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhH---cccccCCCEEECCCCcc-------------------
Confidence 88888888877444445577777777777777776655432 34445555555555544
Q ss_pred EECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCC
Q 038320 223 LHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSL 302 (467)
Q Consensus 223 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 302 (467)
.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+
T Consensus 122 --------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 122 --------KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp --------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred --------CeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC
Confidence 444444455555555555555555544444455566666666666666554445556666666666666666
Q ss_pred CCCCCcccccCCCCCCEEeccCCcCCC
Q 038320 303 IGGQIPKDLGSLCNLWDLDLSGNDLDG 329 (467)
Q Consensus 303 ~~~~~~~~l~~l~~L~~L~l~~n~l~~ 329 (467)
.+..+..+..+++|+.|++++|.+..
T Consensus 194 -~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 194 -KRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp -SCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred -CcCCHHHhccccCCCEEEecCCCeeC
Confidence 44334445666667777777666543
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=9e-28 Score=228.38 Aligned_cols=257 Identities=18% Similarity=0.122 Sum_probs=143.9
Q ss_pred CCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCC
Q 038320 142 LRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLS 221 (467)
Q Consensus 142 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~ 221 (467)
++..+++.+.+...+...+..+++|++|++++|.++.+++. .+..+++|++|++++|.+++.. .+..+++|+
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~-----~~~~l~~L~ 83 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA---DLAPFTKLELLNLSSNVLYETL-----DLESLSTLR 83 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHH---HHTTCTTCCEEECTTSCCEEEE-----EETTCTTCC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHH---HhhCCCcCCEEECCCCcCCcch-----hhhhcCCCC
Confidence 44455555555433334445566777777777777665432 2566677777777777665442 255666666
Q ss_pred EEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCC
Q 038320 222 ELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENS 301 (467)
Q Consensus 222 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 301 (467)
+|++++|.+.+.. ..++|++|++++|.+++..+. .+++|+.|++++|.+++..+..+..+++|++|++++|.
T Consensus 84 ~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 155 (317)
T 3o53_A 84 TLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155 (317)
T ss_dssp EEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC
T ss_pred EEECcCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC
Confidence 7776666665433 225666666666666543332 24556666666666665555555566666666666666
Q ss_pred CCCCCCcccc-cCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcC
Q 038320 302 LIGGQIPKDL-GSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLF 380 (467)
Q Consensus 302 l~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l 380 (467)
+ .+..+..+ ..+++|++|++++|.+++..... ..++|++|++++|++++. +..+..+++|++|++++|.+
T Consensus 156 l-~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-------~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l 226 (317)
T 3o53_A 156 I-DTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-------VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKL 226 (317)
T ss_dssp C-CEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-------CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCC
T ss_pred C-CcccHHHHhhccCcCCEEECCCCcCccccccc-------ccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcc
Confidence 5 33333333 24556666666666655431111 122556666666655533 23355555566666666655
Q ss_pred cccccccccCCCCCCEEECcCCcCc-ccChhhhcCCCCCCEEeCc
Q 038320 381 RGSIPESIGNLSSLRELYLHNNLMD-GTIPKSLGKLSHLVVLDIS 424 (467)
Q Consensus 381 ~~~~~~~l~~~~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~l~ 424 (467)
+ .+|..+..+++|+.|++++|.+. +.+|..+..+++|+.++++
T Consensus 227 ~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 227 V-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp C-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred c-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 5 34555555555666666666555 4455555555555555555
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.4e-26 Score=232.83 Aligned_cols=239 Identities=23% Similarity=0.188 Sum_probs=141.4
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCC
Q 038320 111 VLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRL 190 (467)
Q Consensus 111 l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l 190 (467)
...+++|++|+|++|.+++. .|..++.+++|++|++++|.+++..| +..+++|++|++++|.++.++ ..
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--------~~ 98 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL--------VG 98 (487)
T ss_dssp STTGGGCCEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE--------EC
T ss_pred cccCCCccEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC--------CC
Confidence 34455788888888888765 56778888888888888888875544 777777787777777765432 22
Q ss_pred CCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCE
Q 038320 191 SSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAH 270 (467)
Q Consensus 191 ~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 270 (467)
++|++|++++|.++ +.++. .+++|+.|++++|.+++..|..+.++++|+.
T Consensus 99 ~~L~~L~L~~N~l~---------------------------~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 148 (487)
T 3oja_A 99 PSIETLHAANNNIS---------------------------RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148 (487)
T ss_dssp TTCCEEECCSSCCC---------------------------CEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEE
T ss_pred CCcCEEECcCCcCC---------------------------CCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCE
Confidence 44555555554444 33322 2345666666666666555555566666666
Q ss_pred EeccCCccccccchhhh-CCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEE
Q 038320 271 LDLSANNLQGNIPDAFA-NMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESL 349 (467)
Q Consensus 271 L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L 349 (467)
|++++|.+++..|..+. .+++|++|++++|.+ ++. + ....+++|+.|++++|.+++.++. +..++ +|+.|
T Consensus 149 L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l-~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~-----~L~~L 219 (487)
T 3oja_A 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YDV-K-GQVVFAKLKTLDLSSNKLAFMGPE-FQSAA-----GVTWI 219 (487)
T ss_dssp EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-CEE-E-CCCCCTTCCEEECCSSCCCEECGG-GGGGT-----TCSEE
T ss_pred EECCCCCCCCcChHHHhhhCCcccEEecCCCcc-ccc-c-ccccCCCCCEEECCCCCCCCCCHh-HcCCC-----CccEE
Confidence 66666666665555554 566666666666666 222 2 222455666666666666543333 33333 56666
Q ss_pred ECcCCCCCcCCCccccCCCCCCEEEccCCcCc-ccccccccCCCCCCEEECc
Q 038320 350 DLGQNNLGGFLPNSLGQLENLKILQLWGNLFR-GSIPESIGNLSSLRELYLH 400 (467)
Q Consensus 350 ~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~~~~L~~L~Ls 400 (467)
++++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 220 ~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 220 SLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 666666553 3444555556666666666555 4444555555555555443
No 70
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=1.3e-28 Score=254.65 Aligned_cols=307 Identities=14% Similarity=0.071 Sum_probs=188.3
Q ss_pred CCCCCCEEEcCCCcCCCC----CCccCCCCCcCCeeeccCccCCCCCCCCh-hhcCCCCCCCEEECCCcCCCCCCCchhh
Q 038320 138 SLEKLRYLNLSGASFAGN----IPPSFGNLSSLQILDLNTFYYSSLESDDV-EWLSRLSSLQYLNLEGVDLSKAGSSWVQ 212 (467)
Q Consensus 138 ~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~~~~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 212 (467)
++++|++|++++|.+++. ++..+.++++|++|++++|.++.+....+ ..+.++++|++|++++|.+.+. +.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l----~~ 237 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL----VG 237 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG----HH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH----HH
Confidence 445555555555544332 12223344555555555555443222211 1123455555555555544432 22
Q ss_pred hcCCCCCCCEEECCCCcCc---ccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccc-hhhhC
Q 038320 213 ATNMLPSLSELHLPACGLF---EFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIP-DAFAN 288 (467)
Q Consensus 213 ~~~~l~~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~ 288 (467)
.+..+++|++|+++.+... ......+..+++|+.|+++++. .+.+|..+..+++|++|++++|.+++... ..+..
T Consensus 238 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~ 316 (592)
T 3ogk_B 238 FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQK 316 (592)
T ss_dssp HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTT
T ss_pred HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHh
Confidence 3444555555555432211 1222344555666666666542 24566667777888888888887654433 34577
Q ss_pred CCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecc-----------CCcCCCchhhHHHhhhcccCCCccEEECcCCCCC
Q 038320 289 MTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLS-----------GNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLG 357 (467)
Q Consensus 289 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~-----------~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~ 357 (467)
+++|++|+++ +.+..+.++.....+++|++|+++ .+.+++.....+.. .+++|++|+++.+.++
T Consensus 317 ~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~l~ 391 (592)
T 3ogk_B 317 CPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ----GCQELEYMAVYVSDIT 391 (592)
T ss_dssp CTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHH----HCTTCSEEEEEESCCC
T ss_pred CcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHh----hCccCeEEEeecCCcc
Confidence 8888888887 333133344444667889999988 35666544433322 1248999999888888
Q ss_pred cCCCccccC-CCCCCEEEcc----CCcCccc-----ccccccCCCCCCEEECcCCc--CcccChhhhc-CCCCCCEEeCc
Q 038320 358 GFLPNSLGQ-LENLKILQLW----GNLFRGS-----IPESIGNLSSLRELYLHNNL--MDGTIPKSLG-KLSHLVVLDIS 424 (467)
Q Consensus 358 ~~~~~~l~~-l~~L~~L~l~----~n~l~~~-----~~~~l~~~~~L~~L~Ls~n~--l~~~~p~~l~-~l~~L~~L~l~ 424 (467)
+..+..+.. +++|++|+++ .|.+++. ++..+..+++|++|++++|. +++..+..+. .+++|++|+++
T Consensus 392 ~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~ 471 (592)
T 3ogk_B 392 NESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLG 471 (592)
T ss_dssp HHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEEC
T ss_pred HHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeecc
Confidence 766666655 8899999996 5667653 44446678999999998654 7766665554 48999999999
Q ss_pred CCCCcccCChhhhCCCCCCCEEeccCCCCC
Q 038320 425 GNPWIGLVTEVHFSKLKNLKELHIAKYSLA 454 (467)
Q Consensus 425 ~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~ 454 (467)
+|++++......+..+++|+.|++++|+++
T Consensus 472 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 472 YVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp SCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred CCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 999887443336788999999999999765
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=4e-28 Score=251.10 Aligned_cols=352 Identities=17% Similarity=0.164 Sum_probs=231.6
Q ss_pred CEEEEEcCCCCCCCCcCCCCcccccccccCcccc-CCCCCCEEeCCCC-CCCCCCCCcccCCCCCCCEEEcCCCcCCCCC
Q 038320 79 KVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVL-DLKHLNYLDLSLN-NFRGSRIPNFLGSLEKLRYLNLSGASFAGNI 156 (467)
Q Consensus 79 ~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~-~l~~L~~L~L~~n-~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 156 (467)
+++.+++++ +.+++..+..+. .+++|++|++++| .+++..++..+.++++|++|++++|.+++..
T Consensus 106 ~L~~L~L~~-------------~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~ 172 (594)
T 2p1m_B 106 WLEEIRLKR-------------MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVS 172 (594)
T ss_dssp TCCEEEEES-------------CBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCC
T ss_pred CCCeEEeeC-------------cEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcc
Confidence 566666666 666666555554 5788888888877 4443224444556788888888888766443
Q ss_pred Cc----cCCCCCcCCeeeccCccCCCCCCCChhh-cCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCc--
Q 038320 157 PP----SFGNLSSLQILDLNTFYYSSLESDDVEW-LSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACG-- 229 (467)
Q Consensus 157 p~----~l~~l~~L~~L~l~~n~~~~l~~~~~~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~-- 229 (467)
+. ....+++|++|++++|. ..+....+.. ...+++|++|++++|..... .+..+..+++|++|+++.+.
T Consensus 173 ~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~ 248 (594)
T 2p1m_B 173 GHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEK---LATLLQRAPQLEELGTGGYTAE 248 (594)
T ss_dssp GGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH---HHHHHHHCTTCSEEECSBCCCC
T ss_pred hHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH---HHHHHhcCCcceEcccccccCc
Confidence 32 23467788888888776 3333222222 24567888888887721111 23344455666666644331
Q ss_pred ------------------------Ccc----cCCccccCCCCCcEEEccCCcCCCCc-chhccCCCCCCEEeccCCcccc
Q 038320 230 ------------------------LFE----FPPLSVVNFSSLLFLDLSSNDFNSSI-PQWLLNISKLAHLDLSANNLQG 280 (467)
Q Consensus 230 ------------------------~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~ 280 (467)
+.+ ..+..+..+++|++|++++|.+++.. ...+.++++|+.|++++| +.+
T Consensus 249 ~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~ 327 (594)
T 2p1m_B 249 VRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED 327 (594)
T ss_dssp CCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH
T ss_pred cchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH
Confidence 111 12222335788999999998866432 233568899999999988 432
Q ss_pred c-cchhhhCCCCCCEEeCCC---------CCCCCCCCcccc-cCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEE
Q 038320 281 N-IPDAFANMTSLRELDLSE---------NSLIGGQIPKDL-GSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESL 349 (467)
Q Consensus 281 ~-~~~~l~~l~~L~~L~L~~---------n~l~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L 349 (467)
. ++.....+++|++|++.+ +.+ ++.....+ ..+++|+.|.++.+.+++..+..+... +++|+.|
T Consensus 328 ~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l-~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~----~~~L~~L 402 (594)
T 2p1m_B 328 AGLEVLASTCKDLRELRVFPSEPFVMEPNVAL-TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARN----RPNMTRF 402 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC-CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHH----CTTCCEE
T ss_pred HHHHHHHHhCCCCCEEEEecCcccccccCCCC-CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhh----CCCccee
Confidence 2 333344689999998843 333 22222223 348899999998899887776666532 2389999
Q ss_pred ECc--C----CCCCcC-----CCccccCCCCCCEEEccCCcCcccccccccC-CCCCCEEECcCCcCcccChhhh-cCCC
Q 038320 350 DLG--Q----NNLGGF-----LPNSLGQLENLKILQLWGNLFRGSIPESIGN-LSSLRELYLHNNLMDGTIPKSL-GKLS 416 (467)
Q Consensus 350 ~L~--~----n~i~~~-----~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-~~~L~~L~Ls~n~l~~~~p~~l-~~l~ 416 (467)
+++ + +.+++. ++..+..+++|++|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..++
T Consensus 403 ~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 481 (594)
T 2p1m_B 403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD 481 (594)
T ss_dssp EEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCT
T ss_pred EeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCC
Confidence 999 3 456532 222356788999999987 676665555655 8999999999999987766655 6799
Q ss_pred CCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCC
Q 038320 417 HLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLA 454 (467)
Q Consensus 417 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~ 454 (467)
+|++|++++|++++.........+++|+.|++++|+++
T Consensus 482 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 482 SLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp TCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred CcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 99999999999865554434556899999999999774
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3.9e-25 Score=222.22 Aligned_cols=238 Identities=22% Similarity=0.211 Sum_probs=189.5
Q ss_pred CCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCC
Q 038320 188 SRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISK 267 (467)
Q Consensus 188 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 267 (467)
..+++|++|++++|.+++.. +..+..+++|+.|++++|.+++.++ +..+++|++|++++|.+++.. ..++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~ 100 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQIS---AADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPS 100 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCC---GGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTT
T ss_pred ccCCCccEEEeeCCcCCCCC---HHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCC
Confidence 34558999999999988876 3467888999999999999887665 788899999999999887432 2378
Q ss_pred CCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHH-hhhcccCCCc
Q 038320 268 LAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVD-RLSKCANSSL 346 (467)
Q Consensus 268 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~~~~~~~~~L 346 (467)
|+.|++++|.+++..+. .+++|+.|++++|.+ ++..+..++.+++|+.|++++|.+++..|..+. .++ +|
T Consensus 101 L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~-----~L 171 (487)
T 3oja_A 101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD-----TL 171 (487)
T ss_dssp CCEEECCSSCCCCEEEC---CCSSCEEEECCSSCC-CSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT-----TC
T ss_pred cCEEECcCCcCCCCCcc---ccCCCCEEECCCCCC-CCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC-----cc
Confidence 99999999988866554 467889999999988 667777888888999999999998887776665 344 89
Q ss_pred cEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCC
Q 038320 347 ESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGN 426 (467)
Q Consensus 347 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n 426 (467)
++|++++|.+++.. ....+++|++|++++|.+++ +|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|
T Consensus 172 ~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 172 EHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp CEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTC
T ss_pred cEEecCCCcccccc--ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCC
Confidence 99999999888662 33458889999999999885 44458888899999999999884 7777888889999999999
Q ss_pred CCc-ccCChhhhCCCCCCCEEecc
Q 038320 427 PWI-GLVTEVHFSKLKNLKELHIA 449 (467)
Q Consensus 427 ~~~-~~~~~~~~~~l~~L~~l~l~ 449 (467)
++. +.+|. .+..++.|+.++++
T Consensus 248 ~l~c~~~~~-~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 248 GFHCGTLRD-FFSKNQRVQTVAKQ 270 (487)
T ss_dssp CBCHHHHHH-HHTTCHHHHHHHHH
T ss_pred CCcCcchHH-HHHhCCCCcEEecc
Confidence 888 55555 67788888887775
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=6.6e-24 Score=197.64 Aligned_cols=189 Identities=25% Similarity=0.289 Sum_probs=117.5
Q ss_pred hcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCC
Q 038320 213 ATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSL 292 (467)
Q Consensus 213 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 292 (467)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.++++|+.|++++|.+.+..+..++.+++|
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 126 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence 34445555566666665555555556666666666666666665555566666666666666666665555456667777
Q ss_pred CEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCcc----EEECcCCCCCcCCCccccCCC
Q 038320 293 RELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLE----SLDLGQNNLGGFLPNSLGQLE 368 (467)
Q Consensus 293 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~----~L~L~~n~i~~~~~~~l~~l~ 368 (467)
++|++++|.+....+|..+..+++|++|++++|.+++..+..+..+. +|+ .|++++|.+++..+..+. ..
T Consensus 127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~~l~l~L~ls~n~l~~~~~~~~~-~~ 200 (276)
T 2z62_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-----QMPLLNLSLDLSLNPMNFIQPGAFK-EI 200 (276)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH-----TCTTCCEEEECCSSCCCEECTTSSC-SC
T ss_pred CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh-----hccccceeeecCCCcccccCccccC-CC
Confidence 77777777762223566677777777777777777766555555554 444 677777777654443333 33
Q ss_pred CCCEEEccCCcCcccccccccCCCCCCEEECcCCcCccc
Q 038320 369 NLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGT 407 (467)
Q Consensus 369 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 407 (467)
+|++|++++|.+++..+..+..+++|++|++++|++.+.
T Consensus 201 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 201 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred cccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 677777777776654444456666777777777666643
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=6.2e-24 Score=197.82 Aligned_cols=209 Identities=25% Similarity=0.296 Sum_probs=166.9
Q ss_pred CCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeC
Q 038320 218 PSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDL 297 (467)
Q Consensus 218 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 297 (467)
++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+.++++|+.|++++|.+++..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46888888888888888878889999999999999988766677888999999999999998877788889999999999
Q ss_pred CCCCCCCCCCcccccCCCCCCEEeccCCcCCCc-hhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCC----E
Q 038320 298 SENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGE-IIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLK----I 372 (467)
Q Consensus 298 ~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~----~ 372 (467)
++|.+ .+..+..+..+++|++|++++|.+++. .|..+..++ +|++|++++|++++..+..+..+++|+ +
T Consensus 108 ~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 108 VETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-----NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (276)
T ss_dssp TTSCC-CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-----TCCEEECCSSCCCEECGGGGHHHHTCTTCCEE
T ss_pred CCCCc-cccCchhcccCCCCCEEECcCCccceecCchhhccCC-----CCCEEECCCCCCCcCCHHHhhhhhhcccccee
Confidence 99988 555555688888999999999888763 466666665 888888888888877666666666665 7
Q ss_pred EEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCC
Q 038320 373 LQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVT 433 (467)
Q Consensus 373 L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~ 433 (467)
|++++|.+++..+..+ ...+|++|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 182 L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 182 LDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp EECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred eecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 8888888875444433 44578888888888886666667788888888888888876554
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=2.3e-23 Score=193.20 Aligned_cols=205 Identities=26% Similarity=0.332 Sum_probs=149.2
Q ss_pred CCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeC
Q 038320 218 PSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDL 297 (467)
Q Consensus 218 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 297 (467)
...+.++++++.++..+. .+ .+++++|++++|.+++..+..+.++++|+.|++++|.++...+..+.++++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~ip~-~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPS-NI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCccCC-CC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 356788888888776433 22 257888888888887666667778888888888888887555556677888888888
Q ss_pred CCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccC
Q 038320 298 SENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWG 377 (467)
Q Consensus 298 ~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~ 377 (467)
++|.+ .+..+..+..+++|++|++++|.+++..+..+..++ +|++|++++|.+++..+..+..+++|++|++++
T Consensus 93 ~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 93 TDNKL-QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT-----KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN 166 (270)
T ss_dssp CSSCC-CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCcC-CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc-----CCCEEECCCCcCCccCHhHccCCcccceeEecC
Confidence 88887 555555667778888888888877776665555554 778888888877766666677777788888887
Q ss_pred CcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCccc
Q 038320 378 NLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGL 431 (467)
Q Consensus 378 n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~ 431 (467)
|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++...
T Consensus 167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 167 NQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 777765555677777788888877777765555677777777888877776544
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.3e-24 Score=201.84 Aligned_cols=136 Identities=29% Similarity=0.336 Sum_probs=53.8
Q ss_pred cCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCC
Q 038320 239 VNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLW 318 (467)
Q Consensus 239 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~ 318 (467)
..+++|++|++++|.+++..+..+.++++|+.|++++|.+++..+..+..+++|++|++++|.+ ++..+..+..+++|+
T Consensus 82 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~ 160 (272)
T 3rfs_A 82 KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLT 160 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCC
T ss_pred cCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCcc-CccCHHHhccCccCC
Confidence 3334444444444444433333334444444444444444433333334444444444444444 222222333344444
Q ss_pred EEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcC
Q 038320 319 DLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLF 380 (467)
Q Consensus 319 ~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l 380 (467)
.|++++|.+++..+..+..++ +|++|++++|++++..+..+..+++|++|++++|.+
T Consensus 161 ~L~l~~n~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 161 ELDLSYNQLQSLPEGVFDKLT-----QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EEECCCCCcCccCHHHhcCCc-----cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 444444433333222222222 344444444444433333344444444444444433
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.2e-23 Score=195.35 Aligned_cols=210 Identities=26% Similarity=0.327 Sum_probs=175.2
Q ss_pred CCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCE
Q 038320 215 NMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRE 294 (467)
Q Consensus 215 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 294 (467)
..+++|+.|++++|.+.... .+..+++|++|++++|.+++ + ..+..+++|+.|++++|.+++..+..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 34566677777776665432 46778888999999988875 3 46888999999999999999877777899999999
Q ss_pred EeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEE
Q 038320 295 LDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQ 374 (467)
Q Consensus 295 L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ 374 (467)
|++++|.+ .+..+..+..+++|++|++++|.+++..+..+..++ +|++|++++|++++..+..+..+++|++|+
T Consensus 114 L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 114 LVLVENQL-QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT-----NLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187 (272)
T ss_dssp EECTTSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EECCCCcC-CccCHHHhccCCCCCEEECCCCccCccCHHHhccCc-----cCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence 99999998 666666788999999999999999987776666655 899999999999988777788999999999
Q ss_pred ccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCC
Q 038320 375 LWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKN 442 (467)
Q Consensus 375 l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 442 (467)
+++|.+++..+..+..+++|+.|++++|.+.+ .+++|+.++++.|.++|.+|. .++.++.
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~-~~~~~~~ 247 (272)
T 3rfs_A 188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRN-SAGSVAP 247 (272)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBC-TTSCBCG
T ss_pred CCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccC-cccccCC
Confidence 99999998777778899999999999998874 466899999999999999988 5666554
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=2.5e-25 Score=217.55 Aligned_cols=238 Identities=20% Similarity=0.219 Sum_probs=144.7
Q ss_pred cCCCCCCCEEECCCCc---CcccCCccc-------cCCCCCcEEEccCCcCCC----CcchhccCCCCCCEEeccCCccc
Q 038320 214 TNMLPSLSELHLPACG---LFEFPPLSV-------VNFSSLLFLDLSSNDFNS----SIPQWLLNISKLAHLDLSANNLQ 279 (467)
Q Consensus 214 ~~~l~~L~~L~l~~n~---~~~~~~~~l-------~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~ 279 (467)
+..+++|++|++++|. +.+.+|..+ ..+++|++|++++|.+++ .++..+..+++|+.|++++|.++
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 4445555555555542 223333222 566777777777777765 35666677777777777777775
Q ss_pred cccchhh----hCC---------CCCCEEeCCCCCCCCCCCc---ccccCCCCCCEEeccCCcCCCchhhHHHhhhcccC
Q 038320 280 GNIPDAF----ANM---------TSLRELDLSENSLIGGQIP---KDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCAN 343 (467)
Q Consensus 280 ~~~~~~l----~~l---------~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~ 343 (467)
+..+..+ ..+ ++|++|++++|.+....++ ..+..+++|++|++++|.++......+........
T Consensus 136 ~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~ 215 (386)
T 2ca6_A 136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC 215 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC
T ss_pred HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC
Confidence 4333333 233 7778888887777323444 35566777788888877776433222222111223
Q ss_pred CCccEEECcCCCCC----cCCCccccCCCCCCEEEccCCcCccc----cccccc--CCCCCCEEECcCCcCcc----cCh
Q 038320 344 SSLESLDLGQNNLG----GFLPNSLGQLENLKILQLWGNLFRGS----IPESIG--NLSSLRELYLHNNLMDG----TIP 409 (467)
Q Consensus 344 ~~L~~L~L~~n~i~----~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~--~~~~L~~L~Ls~n~l~~----~~p 409 (467)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ++..+. .+++|++|+|++|.+++ .+|
T Consensus 216 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~ 295 (386)
T 2ca6_A 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295 (386)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence 37778888777775 44566777777888888888877754 455553 37788888888888876 367
Q ss_pred hhh-cCCCCCCEEeCcCCCCcccCC--hhhhCCCCCCCEEeccCC
Q 038320 410 KSL-GKLSHLVVLDISGNPWIGLVT--EVHFSKLKNLKELHIAKY 451 (467)
Q Consensus 410 ~~l-~~l~~L~~L~l~~n~~~~~~~--~~~~~~l~~L~~l~l~~n 451 (467)
..+ .++++|+.|++++|++++..+ ......++.++..++..+
T Consensus 296 ~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 296 TVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp HHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred HHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhhc
Confidence 666 557888888888888776663 212223344444444443
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=5.2e-25 Score=215.30 Aligned_cols=240 Identities=22% Similarity=0.223 Sum_probs=192.3
Q ss_pred hhcCCCCCCCEEECCCCcCcccCC----ccccCCCCCcEEEccCCc---CCCCcchhc-------cCCCCCCEEeccCCc
Q 038320 212 QATNMLPSLSELHLPACGLFEFPP----LSVVNFSSLLFLDLSSND---FNSSIPQWL-------LNISKLAHLDLSANN 277 (467)
Q Consensus 212 ~~~~~l~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~n~---l~~~~~~~l-------~~l~~L~~L~l~~n~ 277 (467)
..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|. +.+.+|..+ ..+++|+.|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 345567788888888888876543 346789999999999964 444556554 688999999999999
Q ss_pred ccc----ccchhhhCCCCCCEEeCCCCCCCCCCCcc----cccCC---------CCCCEEeccCCcCCCchhh----HHH
Q 038320 278 LQG----NIPDAFANMTSLRELDLSENSLIGGQIPK----DLGSL---------CNLWDLDLSGNDLDGEIIE----FVD 336 (467)
Q Consensus 278 l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~l~~l---------~~L~~L~l~~n~l~~~~~~----~l~ 336 (467)
+.+ .++..+..+++|++|++++|.+ +...+. .+..+ ++|++|++++|.+++.... .+.
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 987 4777889999999999999998 433333 33344 8999999999999844333 333
Q ss_pred hhhcccCCCccEEECcCCCCCc-----CCCccccCCCCCCEEEccCCcCc----ccccccccCCCCCCEEECcCCcCccc
Q 038320 337 RLSKCANSSLESLDLGQNNLGG-----FLPNSLGQLENLKILQLWGNLFR----GSIPESIGNLSSLRELYLHNNLMDGT 407 (467)
Q Consensus 337 ~~~~~~~~~L~~L~L~~n~i~~-----~~~~~l~~l~~L~~L~l~~n~l~----~~~~~~l~~~~~L~~L~Ls~n~l~~~ 407 (467)
..+ +|++|++++|.++. ..+..+..+++|++|++++|.++ +.+|..+..+++|++|+|++|.+++.
T Consensus 185 ~~~-----~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 185 SHR-----LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp HCT-----TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred hCC-----CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh
Confidence 443 89999999999983 23447889999999999999996 57888899999999999999999876
Q ss_pred ----ChhhhcC--CCCCCEEeCcCCCCcc----cCChhhhCCCCCCCEEeccCCCCCCCc
Q 038320 408 ----IPKSLGK--LSHLVVLDISGNPWIG----LVTEVHFSKLKNLKELHIAKYSLAPRL 457 (467)
Q Consensus 408 ----~p~~l~~--l~~L~~L~l~~n~~~~----~~~~~~~~~l~~L~~l~l~~n~i~~~~ 457 (467)
++..+.. +++|++|++++|++++ .++...+.++++|+.|++++|+++...
T Consensus 260 ~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 6677744 9999999999999998 477733467899999999999887554
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=6.8e-24 Score=200.94 Aligned_cols=202 Identities=20% Similarity=0.205 Sum_probs=106.0
Q ss_pred CCCCCEEECCCCcCcccCCccc--cCCCCCcEEEccCCcCCCCcc----hhccCCCCCCEEeccCCccccccchhhhCCC
Q 038320 217 LPSLSELHLPACGLFEFPPLSV--VNFSSLLFLDLSSNDFNSSIP----QWLLNISKLAHLDLSANNLQGNIPDAFANMT 290 (467)
Q Consensus 217 l~~L~~L~l~~n~~~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 290 (467)
+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+.+..+..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3446666666666666666555 666677777777776665433 2334566666666666666655556666666
Q ss_pred CCCEEeCCCCCCCCCC--C--cccccCCCCCCEEeccCCcCCCchhh---HHHhhhcccCCCccEEECcCCCCCcCCCcc
Q 038320 291 SLRELDLSENSLIGGQ--I--PKDLGSLCNLWDLDLSGNDLDGEIIE---FVDRLSKCANSSLESLDLGQNNLGGFLPNS 363 (467)
Q Consensus 291 ~L~~L~L~~n~l~~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~---~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~ 363 (467)
+|++|++++|++ .+. + +..+..+++|++|++++|.++..... .+..+. +|++|++++|++++..|..
T Consensus 170 ~L~~L~Ls~N~l-~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~-----~L~~L~Ls~N~l~~~~p~~ 243 (310)
T 4glp_A 170 ALTSLDLSDNPG-LGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV-----QPHSLDLSHNSLRATVNPS 243 (310)
T ss_dssp TCCEEECCSCTT-CHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC-----CCSSEECTTSCCCCCCCSC
T ss_pred CCCEEECCCCCC-ccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC-----CCCEEECCCCCCCccchhh
Confidence 666666666665 221 1 11234566666666666666532111 112222 5566666666555554444
Q ss_pred ccCC---CCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCc
Q 038320 364 LGQL---ENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWI 429 (467)
Q Consensus 364 l~~l---~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~ 429 (467)
+..+ ++|++|++++|.++ .+|..+. ++|++|+|++|++++. |. +..+++|+.|++++|+++
T Consensus 244 ~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 244 APRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred HHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 4433 35555555555554 3344332 4444444444444421 11 233444444444444443
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=7e-25 Score=212.38 Aligned_cols=234 Identities=22% Similarity=0.187 Sum_probs=111.6
Q ss_pred EEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCC-hhhcCCCC-CCCEEECCCcCCCCCCCch-hhhcCCC-CCC
Q 038320 145 LNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDD-VEWLSRLS-SLQYLNLEGVDLSKAGSSW-VQATNML-PSL 220 (467)
Q Consensus 145 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~-~~~l~~l~-~L~~L~L~~n~~~~~~~~~-~~~~~~l-~~L 220 (467)
++++.|.+++.+|..+...++|++|++++|.++..+... ...+..++ +|++|++++|.+++..... ...+... ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 344555555444444444444555555555544333211 01234444 5555555555555443221 1112222 677
Q ss_pred CEEECCCCcCcccCCcccc----CC-CCCcEEEccCCcCCCCcchhc----cC-CCCCCEEeccCCcccccc----chhh
Q 038320 221 SELHLPACGLFEFPPLSVV----NF-SSLLFLDLSSNDFNSSIPQWL----LN-ISKLAHLDLSANNLQGNI----PDAF 286 (467)
Q Consensus 221 ~~L~l~~n~~~~~~~~~l~----~l-~~L~~L~l~~n~l~~~~~~~l----~~-l~~L~~L~l~~n~l~~~~----~~~l 286 (467)
++|++++|.+++..+..+. .+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++.. +..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 7777777777665554332 22 566666666666655444332 22 246666666666665422 2223
Q ss_pred hCCC-CCCEEeCCCCCCCCCCCcc----cccCC-CCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCC
Q 038320 287 ANMT-SLRELDLSENSLIGGQIPK----DLGSL-CNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFL 360 (467)
Q Consensus 287 ~~l~-~L~~L~L~~n~l~~~~~~~----~l~~l-~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~ 360 (467)
..++ +|++|++++|.+ ++..+. .+..+ ++|++|++++|.+++.....+........++|++|++++|.+++..
T Consensus 163 ~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNL-ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HTSCTTCCEEECTTSCG-GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred hcCCccccEeeecCCCC-chhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 3443 566666666655 333332 22233 3566666666655553333332221111125555555555555432
Q ss_pred C----ccccCCCCCCEEEccCCc
Q 038320 361 P----NSLGQLENLKILQLWGNL 379 (467)
Q Consensus 361 ~----~~l~~l~~L~~L~l~~n~ 379 (467)
+ ..+..+++|++|++++|.
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHHhcCCCccEEEeccCC
Confidence 2 222344555555555554
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=9e-23 Score=191.03 Aligned_cols=204 Identities=27% Similarity=0.293 Sum_probs=148.5
Q ss_pred cCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCC
Q 038320 187 LSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNIS 266 (467)
Q Consensus 187 l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 266 (467)
+.+++++++++++++.++..... + .++++.|++++|.+.+..+..+..+++|++|++++|.+++. +. ...++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~----~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~ 77 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPD----L--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLP 77 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSC----C--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCT
T ss_pred ccccCCccEEECCCCCCCcCCCC----C--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCC
Confidence 56778888888888888766432 2 25788888888888877777788888888888888887643 32 26777
Q ss_pred CCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCc
Q 038320 267 KLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSL 346 (467)
Q Consensus 267 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L 346 (467)
+|+.|++++|.++ .+|..+..+++|++|++++|++ ++..+..+..+++|++|++++|++++..+..+..++ +|
T Consensus 78 ~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L 150 (290)
T 1p9a_G 78 VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-----KL 150 (290)
T ss_dssp TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCC-CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-----TC
T ss_pred cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcC-cccCHHHHcCCCCCCEEECCCCCCCccChhhccccc-----CC
Confidence 8888888888776 5666677778888888888877 555556677777888888888777766555555444 77
Q ss_pred cEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcc
Q 038320 347 ESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDG 406 (467)
Q Consensus 347 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~ 406 (467)
+.|++++|++++..+..+..+++|++|++++|.++ .+|..+...++|+.|++++|.+..
T Consensus 151 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 77777777777655556677777777777777777 566666677777777777777653
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=1e-24 Score=211.29 Aligned_cols=263 Identities=22% Similarity=0.237 Sum_probs=188.1
Q ss_pred eeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCc-hhhhcCCCC-CCCEEECCCCcCcccCCccccCC----
Q 038320 168 ILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSS-WVQATNMLP-SLSELHLPACGLFEFPPLSVVNF---- 241 (467)
Q Consensus 168 ~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~l---- 241 (467)
++++++|.++...+. .+...++|++|++++|.+++.... +...+..++ +|++|++++|.+.+..+..+..+
T Consensus 2 ~~~ls~n~~~~~~~~---~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 2 NYKLTLHPGSNPVEE---FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp EEECCCCTTCCHHHH---HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred ccccccccchHHHHH---HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence 356677766543222 245556699999999998877531 124566777 89999999999988877666664
Q ss_pred -CCCcEEEccCCcCCCCcchhc----cCC-CCCCEEeccCCccccccchhhh----C-CCCCCEEeCCCCCCCCCCC---
Q 038320 242 -SSLLFLDLSSNDFNSSIPQWL----LNI-SKLAHLDLSANNLQGNIPDAFA----N-MTSLRELDLSENSLIGGQI--- 307 (467)
Q Consensus 242 -~~L~~L~l~~n~l~~~~~~~l----~~l-~~L~~L~l~~n~l~~~~~~~l~----~-l~~L~~L~L~~n~l~~~~~--- 307 (467)
++|++|++++|.+++..+..+ ..+ ++|+.|++++|.+++..+..+. . .++|++|++++|.+ ++..
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~ 157 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL-GIKSSDE 157 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCG-GGSCHHH
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcC-CHHHHHH
Confidence 889999999999887666533 344 7899999999998876655543 3 36899999999988 4332
Q ss_pred -cccccCCC-CCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcC----CCccccC-CCCCCEEEccCCcC
Q 038320 308 -PKDLGSLC-NLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGF----LPNSLGQ-LENLKILQLWGNLF 380 (467)
Q Consensus 308 -~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~----~~~~l~~-l~~L~~L~l~~n~l 380 (467)
+..+..++ +|++|++++|.+++..+..+........++|++|++++|.+++. ++..+.. .++|++|++++|.+
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 33445555 89999999999888777766655222223899999999988863 3444444 45899999999988
Q ss_pred ccccc----ccccCCCCCCEEECcCCcCccc-------ChhhhcCCCCCCEEeCcCCCCcccCCh
Q 038320 381 RGSIP----ESIGNLSSLRELYLHNNLMDGT-------IPKSLGKLSHLVVLDISGNPWIGLVTE 434 (467)
Q Consensus 381 ~~~~~----~~l~~~~~L~~L~Ls~n~l~~~-------~p~~l~~l~~L~~L~l~~n~~~~~~~~ 434 (467)
++..+ ..+..+++|+.|++++|.+.+. ++..+..+++|+.||+++|++....+.
T Consensus 238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp CCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred CcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 86544 3346778899999999884432 334566788889999999988776543
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.9e-22 Score=188.80 Aligned_cols=205 Identities=24% Similarity=0.199 Sum_probs=174.4
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCC
Q 038320 110 SVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSR 189 (467)
Q Consensus 110 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~ 189 (467)
.+.+++++++++++++.++ .+|..+. +++++|++++|.+++..+..+.++++|++|++++|.++.++. ...
T Consensus 5 ~~~~l~~l~~l~~~~~~l~--~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~ 75 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT--ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-----DGT 75 (290)
T ss_dssp EEECSTTCCEEECTTSCCS--SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-----CSC
T ss_pred cccccCCccEEECCCCCCC--cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-----CCC
Confidence 4677889999999999888 4666554 689999999999987777889999999999999999887654 367
Q ss_pred CCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCC
Q 038320 190 LSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLA 269 (467)
Q Consensus 190 l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 269 (467)
+++|++|++++|.++... ..+..+++|++|++++|++++.++..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 76 l~~L~~L~Ls~N~l~~l~----~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQSLP----LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp CTTCCEEECCSSCCSSCC----CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCcCCEEECCCCcCCcCc----hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence 889999999999988553 3567889999999999999988888899999999999999999877777788899999
Q ss_pred EEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCC
Q 038320 270 HLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDG 329 (467)
Q Consensus 270 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~ 329 (467)
.|++++|++++..+..+..+++|++|++++|++ ..+|..+...++|+.+++++|.+..
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l--~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSL--YTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCcC--CccChhhcccccCCeEEeCCCCccC
Confidence 999999999866666778899999999999998 4677778888899999999998764
No 85
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=5.9e-26 Score=234.76 Aligned_cols=336 Identities=16% Similarity=0.138 Sum_probs=223.7
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCcccC-CCCCCCEEEcCCC-cCCCC-CCccCCCCCcCCeeeccCccCCCCCCCChhhc
Q 038320 111 VLDLKHLNYLDLSLNNFRGSRIPNFLG-SLEKLRYLNLSGA-SFAGN-IPPSFGNLSSLQILDLNTFYYSSLESDDVEWL 187 (467)
Q Consensus 111 l~~l~~L~~L~L~~n~i~~~~~~~~~~-~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l 187 (467)
...+++|++|+|++|.+++. .+..+. .+++|++|++++| .++.. ++..+.++++|++|++++|.++......+..+
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDD-CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHH-HHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred HHhCCCCCeEEeeCcEEcHH-HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 35788999999999988765 444443 6899999999998 44422 44445579999999999998765443333323
Q ss_pred -CCCCCCCEEECCCcCCCCCCCc-hhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcC-----------
Q 038320 188 -SRLSSLQYLNLEGVDLSKAGSS-WVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDF----------- 254 (467)
Q Consensus 188 -~~l~~L~~L~L~~n~~~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l----------- 254 (467)
..+++|++|++++|. ...... +......+++|++|++++|...+..+..+..+++|++|+++.+..
T Consensus 180 ~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 258 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258 (594)
T ss_dssp CTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred hhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHH
Confidence 378899999999987 222111 122234579999999999843333556667788888888655421
Q ss_pred ---------------C----CCcchhccCCCCCCEEeccCCccccccc-hhhhCCCCCCEEeCCCCCCCCCCCcccccCC
Q 038320 255 ---------------N----SSIPQWLLNISKLAHLDLSANNLQGNIP-DAFANMTSLRELDLSENSLIGGQIPKDLGSL 314 (467)
Q Consensus 255 ---------------~----~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l 314 (467)
. +.++..+..+++|+.|++++|.+++... ..+..+++|++|++++| +....++.....+
T Consensus 259 ~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~ 337 (594)
T 2p1m_B 259 VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTC 337 (594)
T ss_dssp HHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHC
T ss_pred HHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhC
Confidence 1 1122233355777777777777654322 23456777777777776 3112222233357
Q ss_pred CCCCEEecc---------CCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCcccc-CCCCCCEEEcc--C----C
Q 038320 315 CNLWDLDLS---------GNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLG-QLENLKILQLW--G----N 378 (467)
Q Consensus 315 ~~L~~L~l~---------~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~-~l~~L~~L~l~--~----n 378 (467)
++|+.|+++ .+.+++.....+.. .+++|++|.+..+.+++.....+. .+++|+.|+++ + +
T Consensus 338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~----~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSM----GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH----HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred CCCCEEEEecCcccccccCCCCCHHHHHHHHH----hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence 778888773 34555444443332 124888888888888765444444 58899999998 3 4
Q ss_pred cCcc-----cccccccCCCCCCEEECcCCcCcccChhhhcC-CCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCC
Q 038320 379 LFRG-----SIPESIGNLSSLRELYLHNNLMDGTIPKSLGK-LSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYS 452 (467)
Q Consensus 379 ~l~~-----~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~ 452 (467)
.+++ .++..+..+++|++|++++ .+++..+..+.. +++|+.|++++|.+++.........+++|+.|++++|+
T Consensus 414 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 414 YLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp TTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred cccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence 4542 2223356788999999987 777766666666 89999999999998776555233678999999999998
Q ss_pred CC
Q 038320 453 LA 454 (467)
Q Consensus 453 i~ 454 (467)
++
T Consensus 493 ~~ 494 (594)
T 2p1m_B 493 FG 494 (594)
T ss_dssp CC
T ss_pred Cc
Confidence 74
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=5.1e-24 Score=204.21 Aligned_cols=234 Identities=18% Similarity=0.162 Sum_probs=154.4
Q ss_pred CCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCccc-CCccccCCCCCcEEEccCCcCCCCcchhccCCCCCC
Q 038320 191 SSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEF-PPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLA 269 (467)
Q Consensus 191 ~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 269 (467)
++++.|++++|.+.+..+ .+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~ 145 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLA----EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV 145 (336)
T ss_dssp TTCSEEECTTCEECSCCC----SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCS
T ss_pred ccceEEEcCCccccccch----hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCC
Confidence 344444444444444322 233466666666666666544 455566777777777777777766677777778888
Q ss_pred EEeccCC-ccccc-cchhhhCCCCCCEEeCCCC-CCCCC-CCcccccCCC-CCCEEeccCC--cCC-CchhhHHHhhhcc
Q 038320 270 HLDLSAN-NLQGN-IPDAFANMTSLRELDLSEN-SLIGG-QIPKDLGSLC-NLWDLDLSGN--DLD-GEIIEFVDRLSKC 341 (467)
Q Consensus 270 ~L~l~~n-~l~~~-~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~~l~~l~-~L~~L~l~~n--~l~-~~~~~~l~~~~~~ 341 (467)
+|++++| .+++. ++..+..+++|++|++++| .+ ++ .++..+..++ +|++|++++| .++ +..+..+..++
T Consensus 146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~-- 222 (336)
T 2ast_B 146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF-TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP-- 222 (336)
T ss_dssp EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC-CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT--
T ss_pred EEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc-ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCC--
Confidence 8888887 56542 5566777888888888888 66 33 2556677777 8888888888 455 33444445544
Q ss_pred cCCCccEEECcCCC-CCcCCCccccCCCCCCEEEccCCc-CcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCC
Q 038320 342 ANSSLESLDLGQNN-LGGFLPNSLGQLENLKILQLWGNL-FRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLV 419 (467)
Q Consensus 342 ~~~~L~~L~L~~n~-i~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 419 (467)
+|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| +++.....+. .+++
T Consensus 223 ---~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~ 296 (336)
T 2ast_B 223 ---NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALP 296 (336)
T ss_dssp ---TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHST
T ss_pred ---CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCc
Confidence 78888888887 666666777888888888888884 33333335677888888888888 5544333332 2355
Q ss_pred EEeCcCCCCcccCChhhhC
Q 038320 420 VLDISGNPWIGLVTEVHFS 438 (467)
Q Consensus 420 ~L~l~~n~~~~~~~~~~~~ 438 (467)
.|++++|++++..|. .++
T Consensus 297 ~L~l~~n~l~~~~~~-~~~ 314 (336)
T 2ast_B 297 HLQINCSHFTTIARP-TIG 314 (336)
T ss_dssp TSEESCCCSCCTTCS-SCS
T ss_pred ceEEecccCccccCC-ccc
Confidence 555788888887776 444
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=3.7e-23 Score=195.92 Aligned_cols=231 Identities=19% Similarity=0.141 Sum_probs=183.3
Q ss_pred CCCCCEEECCCCcCcccCCc---cccCCCCCcEEEccCCcCCCCcchhc--cCCCCCCEEeccCCccccccc----hhhh
Q 038320 217 LPSLSELHLPACGLFEFPPL---SVVNFSSLLFLDLSSNDFNSSIPQWL--LNISKLAHLDLSANNLQGNIP----DAFA 287 (467)
Q Consensus 217 l~~L~~L~l~~n~~~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~----~~l~ 287 (467)
...++.+.+.++.+...... .+..+++|++|++++|.+++..|..+ ..+++|+.|++++|.+++..+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34577888888776542111 12235679999999999999998887 899999999999999987554 3456
Q ss_pred CCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcC--CCc-cc
Q 038320 288 NMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGF--LPN-SL 364 (467)
Q Consensus 288 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~--~~~-~l 364 (467)
.+++|++|++++|.+ .+..+..++.+++|++|++++|.+.+...... ......+++|++|++++|+++.. .+. .+
T Consensus 143 ~~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 220 (310)
T 4glp_A 143 LKPGLKVLSIAQAHS-PAFSCEQVRAFPALTSLDLSDNPGLGERGLMA-ALCPHKFPAIQNLALRNTGMETPTGVCAALA 220 (310)
T ss_dssp BCSCCCEEEEECCSS-CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT-TSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred hccCCCEEEeeCCCc-chhhHHHhccCCCCCEEECCCCCCccchhhhH-HHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence 799999999999999 77777889999999999999999875321100 01112334899999999999732 111 35
Q ss_pred cCCCCCCEEEccCCcCcccccccccCC---CCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCC
Q 038320 365 GQLENLKILQLWGNLFRGSIPESIGNL---SSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLK 441 (467)
Q Consensus 365 ~~l~~L~~L~l~~n~l~~~~~~~l~~~---~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 441 (467)
..+++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..++
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~--~~~l~ 294 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ--PDELP 294 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC--TTSCC
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch--hhhCC
Confidence 788999999999999998878877776 79999999999998 7787764 8999999999999874 32 56789
Q ss_pred CCCEEeccCCCCCC
Q 038320 442 NLKELHIAKYSLAP 455 (467)
Q Consensus 442 ~L~~l~l~~n~i~~ 455 (467)
+|+.|++++|+|++
T Consensus 295 ~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 295 EVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSCEECSSTTTSC
T ss_pred CccEEECcCCCCCC
Confidence 99999999998875
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=3.8e-24 Score=205.10 Aligned_cols=248 Identities=22% Similarity=0.214 Sum_probs=198.6
Q ss_pred CCCEEECCCcCCCCCCCchhhhcCCC--CCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCC-cchhccCCCCC
Q 038320 192 SLQYLNLEGVDLSKAGSSWVQATNML--PSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSS-IPQWLLNISKL 268 (467)
Q Consensus 192 ~L~~L~L~~n~~~~~~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L 268 (467)
.++.++++++.+.. ..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|
T Consensus 48 ~~~~l~l~~~~~~~------~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 48 LWQTLDLTGKNLHP------DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp TSSEEECTTCBCCH------HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred hheeeccccccCCH------HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 46788888777652 234444 7899999999999888765 56799999999999998865 78888999999
Q ss_pred CEEeccCCccccccchhhhCCCCCCEEeCCCC-CCCCC-CCcccccCCCCCCEEeccCC-cCCCc-hhhHHHhhhcccCC
Q 038320 269 AHLDLSANNLQGNIPDAFANMTSLRELDLSEN-SLIGG-QIPKDLGSLCNLWDLDLSGN-DLDGE-IIEFVDRLSKCANS 344 (467)
Q Consensus 269 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~~~~~~~~ 344 (467)
++|++++|.+++..+..++.+++|++|++++| .+ ++ .++..+..+++|++|++++| .+++. .+..+..+ +
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l-~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l-----~ 194 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF-SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV-----S 194 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSC-CHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS-----C
T ss_pred CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCC-CHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc-----c
Confidence 99999999999888889999999999999999 56 44 46667889999999999999 88865 34444443 4
Q ss_pred -CccEEECcCC--CCC-cCCCccccCCCCCCEEEccCCc-CcccccccccCCCCCCEEECcCCc-CcccChhhhcCCCCC
Q 038320 345 -SLESLDLGQN--NLG-GFLPNSLGQLENLKILQLWGNL-FRGSIPESIGNLSSLRELYLHNNL-MDGTIPKSLGKLSHL 418 (467)
Q Consensus 345 -~L~~L~L~~n--~i~-~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~~~~L~~L~Ls~n~-l~~~~p~~l~~l~~L 418 (467)
+|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. ++......+..+++|
T Consensus 195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L 274 (336)
T 2ast_B 195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 274 (336)
T ss_dssp TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCC
Confidence 8999999999 566 4567777889999999999999 777888889999999999999994 444444578899999
Q ss_pred CEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCCCC
Q 038320 419 VVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAPR 456 (467)
Q Consensus 419 ~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~~ 456 (467)
+.|++++| ++..... .+. ..++.|++++|+++..
T Consensus 275 ~~L~l~~~-i~~~~~~-~l~--~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 275 KTLQVFGI-VPDGTLQ-LLK--EALPHLQINCSHFTTI 308 (336)
T ss_dssp CEEECTTS-SCTTCHH-HHH--HHSTTSEESCCCSCCT
T ss_pred CEEeccCc-cCHHHHH-HHH--hhCcceEEecccCccc
Confidence 99999999 4433222 221 2366677899977643
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=3.8e-22 Score=182.97 Aligned_cols=189 Identities=23% Similarity=0.299 Sum_probs=120.5
Q ss_pred CCCCcccEEecCCCCCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCC
Q 038320 64 DCCKWEGVICDNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLR 143 (467)
Q Consensus 64 ~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~ 143 (467)
+||.|.|+.|.. ..+.+++++ +.++ .+|..+. +++++|++++|.+++. .+..+.++++|+
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~-------------~~l~-~~p~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~ 62 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQG-------------KSLD-SVPSGIP--ADTEKLDLQSTGLATL-SDATFRGLTKLT 62 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTT-------------CCCS-SCCSCCC--TTCCEEECTTSCCCCC-CTTTTTTCTTCC
T ss_pred cCCCCCceEcCC---CCeEEecCC-------------CCcc-ccCCCCC--CCCCEEEccCCCcCcc-CHhHhcCcccCC
Confidence 688999999953 234567776 4444 3444443 5788899998888875 666788888899
Q ss_pred EEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEE
Q 038320 144 YLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSEL 223 (467)
Q Consensus 144 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L 223 (467)
+|++++|.+.+..+..+.++++|++|++++|.++.++... +..+++|++|++++|.++..
T Consensus 63 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~N~l~~~----------------- 122 (251)
T 3m19_A 63 WLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGV---FDHLTQLDKLYLGGNQLKSL----------------- 122 (251)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT---TTTCTTCCEEECCSSCCCCC-----------------
T ss_pred EEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhH---hcccCCCCEEEcCCCcCCCc-----------------
Confidence 9999888888777777888888888888888877666543 44555555555555555544
Q ss_pred ECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCC
Q 038320 224 HLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSL 302 (467)
Q Consensus 224 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 302 (467)
++..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+
T Consensus 123 ----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 123 ----------PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp ----------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred ----------ChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 333344445555555555555444343455555555555555555544444555555555566555555
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=8.7e-22 Score=186.09 Aligned_cols=195 Identities=22% Similarity=0.331 Sum_probs=138.2
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCC
Q 038320 111 VLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRL 190 (467)
Q Consensus 111 l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l 190 (467)
...+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+ ++. +.++++|++|++++|.++.++ .+..+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~~-----~~~~l 106 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNVS-----AIAGL 106 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCCG-----GGTTC
T ss_pred HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCch-----hhcCC
Confidence 3467788889998888873 44 57778889999999888874 444 888888888888888877653 27778
Q ss_pred CCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCE
Q 038320 191 SSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAH 270 (467)
Q Consensus 191 ~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 270 (467)
++|++|++++|.+++.. .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.
T Consensus 107 ~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~ 177 (308)
T 1h6u_A 107 QSIKTLDLTSTQITDVT-----PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTT 177 (308)
T ss_dssp TTCCEEECTTSCCCCCG-----GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred CCCCEEECCCCCCCCch-----hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCE
Confidence 88888888888877643 36677777777777777776544 6677777777777777764332 666777777
Q ss_pred EeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCC
Q 038320 271 LDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDG 329 (467)
Q Consensus 271 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~ 329 (467)
|++++|.+++..+ +..+++|++|++++|.+ .+. + .+..+++|+.|++++|.+++
T Consensus 178 L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l-~~~-~-~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 178 LKADDNKISDISP--LASLPNLIEVHLKNNQI-SDV-S-PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECTTSCC-CBC-G-GGTTCTTCCEEEEEEEEEEC
T ss_pred EECCCCccCcChh--hcCCCCCCEEEccCCcc-Ccc-c-cccCCCCCCEEEccCCeeec
Confidence 7777777764332 56677777777777776 322 2 25666667777776666654
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=3e-21 Score=176.95 Aligned_cols=180 Identities=26% Similarity=0.314 Sum_probs=114.8
Q ss_pred CCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCC
Q 038320 219 SLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLS 298 (467)
Q Consensus 219 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 298 (467)
..++++++++.+...+. .+. ++++.|++++|.+++..+..+.++++|+.|++++|.+++..+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~-~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPS-GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCS-CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCC-CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 45667777776665443 222 467777777777776666666777777777777777776666666677777777777
Q ss_pred CCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCC
Q 038320 299 ENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGN 378 (467)
Q Consensus 299 ~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n 378 (467)
+|.+ .+..+..+..+++|++|++++|.+++..+..+..+. +|++|++++|++++..+..+..+++|++|++++|
T Consensus 92 ~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 92 NNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT-----KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165 (251)
T ss_dssp TSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcc-cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCC-----cccEEECcCCcCCccCHHHcCcCcCCCEEECCCC
Confidence 7776 444445566666677777776666655444444443 6666666666666555555666666666666666
Q ss_pred cCcccccccccCCCCCCEEECcCCcCccc
Q 038320 379 LFRGSIPESIGNLSSLRELYLHNNLMDGT 407 (467)
Q Consensus 379 ~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 407 (467)
.+++..+..+..+++|+.|++++|++.+.
T Consensus 166 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 166 QLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 66655555566666666666666666544
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=2.8e-21 Score=182.65 Aligned_cols=193 Identities=22% Similarity=0.322 Sum_probs=102.3
Q ss_pred CCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCC
Q 038320 188 SRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISK 267 (467)
Q Consensus 188 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 267 (467)
..+++|++|++++|.+.... .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. + .+..+++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-----~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~ 108 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-----GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQS 108 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-----TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTT
T ss_pred HHcCCcCEEEeeCCCccCch-----hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCC
Confidence 34566777777766665532 34456666666666666655443 55566666666666665532 2 3555566
Q ss_pred CCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCcc
Q 038320 268 LAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLE 347 (467)
Q Consensus 268 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~ 347 (467)
|+.|++++|.+++. + .+..+++|++|++++|.+ .+. +. +..+++|+.|++++|.+++..+ +..++ +|+
T Consensus 109 L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l-~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~-----~L~ 176 (308)
T 1h6u_A 109 IKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQI-TNI-SP-LAGLTNLQYLSIGNAQVSDLTP--LANLS-----KLT 176 (308)
T ss_dssp CCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCC-CCC-GG-GGGCTTCCEEECCSSCCCCCGG--GTTCT-----TCC
T ss_pred CCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCcc-CcC-cc-ccCCCCccEEEccCCcCCCChh--hcCCC-----CCC
Confidence 66666666655532 2 255555666666666555 222 21 4555555555555555554322 22222 555
Q ss_pred EEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCc
Q 038320 348 SLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMD 405 (467)
Q Consensus 348 ~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~ 405 (467)
.|++++|.+++..+ +..+++|++|++++|.+++.. .+..+++|+.|++++|+++
T Consensus 177 ~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 177 TLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp EEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred EEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 55555555553322 445555555555555555332 1445555555555555554
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.7e-21 Score=177.23 Aligned_cols=196 Identities=21% Similarity=0.234 Sum_probs=149.4
Q ss_pred CCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCc-CCCCCCccCCCCCcCCeeeccC-ccCCCCCCCChhhcCCCCCC
Q 038320 116 HLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGAS-FAGNIPPSFGNLSSLQILDLNT-FYYSSLESDDVEWLSRLSSL 193 (467)
Q Consensus 116 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~l~~-n~~~~l~~~~~~~l~~l~~L 193 (467)
+|++|++++|++++. .+..+.++++|++|++++|. +++..+..|.++++|++|++++ |.++.++... +.++++|
T Consensus 32 ~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~---f~~l~~L 107 (239)
T 2xwt_C 32 STQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA---LKELPLL 107 (239)
T ss_dssp TCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS---EECCTTC
T ss_pred cccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH---hCCCCCC
Confidence 789999999998854 45578889999999999997 7755556788999999999998 8888777554 6778889
Q ss_pred CEEECCCcCCCCCCCchhhhcCCCCCCC---EEECCCC-cCcccCCccccCCCCCc-EEEccCCcCCCCcchhccCCCCC
Q 038320 194 QYLNLEGVDLSKAGSSWVQATNMLPSLS---ELHLPAC-GLFEFPPLSVVNFSSLL-FLDLSSNDFNSSIPQWLLNISKL 268 (467)
Q Consensus 194 ~~L~L~~n~~~~~~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~l~~l~~L 268 (467)
++|++++|.+++.. .+..+++|+ +|++++| .+.+..+..+..+++|+ +|++++|.++ .+|......++|
T Consensus 108 ~~L~l~~n~l~~lp-----~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L 181 (239)
T 2xwt_C 108 KFLGIFNTGLKMFP-----DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKL 181 (239)
T ss_dssp CEEEEEEECCCSCC-----CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEE
T ss_pred CEEeCCCCCCcccc-----ccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCC
Confidence 99999998887743 256666666 8888888 88877777788888888 8888888887 555544344778
Q ss_pred CEEeccCCc-cccccchhhhCC-CCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCC
Q 038320 269 AHLDLSANN-LQGNIPDAFANM-TSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGN 325 (467)
Q Consensus 269 ~~L~l~~n~-l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n 325 (467)
+.|++++|+ +++..+..+..+ ++|+.|++++|.+ + .+|.. .+++|+.|+++++
T Consensus 182 ~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l-~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 182 DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV-T-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp EEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC-C-CCCCT--TCTTCSEEECTTC
T ss_pred CEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc-c-cCChh--HhccCceeeccCc
Confidence 888888884 775556667777 7888888888877 3 34433 5667777777654
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.2e-21 Score=178.20 Aligned_cols=199 Identities=23% Similarity=0.268 Sum_probs=108.7
Q ss_pred CCCEEECCCCcCcccCCccccCCCCCcEEEccCCc-CCCCcchhccCCCCCCEEeccC-CccccccchhhhCCCCCCEEe
Q 038320 219 SLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSND-FNSSIPQWLLNISKLAHLDLSA-NNLQGNIPDAFANMTSLRELD 296 (467)
Q Consensus 219 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~ 296 (467)
+|++|++++|++++..+..+..+++|++|++++|. +++..+..+.++++|+.|++++ |.+++..+..+.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44555555555555444445555555555555554 4433333445555555555554 555444344444555555555
Q ss_pred CCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCC-CCCcCCCccccCCCCCC-EEE
Q 038320 297 LSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQN-NLGGFLPNSLGQLENLK-ILQ 374 (467)
Q Consensus 297 L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~i~~~~~~~l~~l~~L~-~L~ 374 (467)
+++|.+ .+ +|. +..+++|+ .|++|++++| .+++..+..+..+++|+ +|+
T Consensus 112 l~~n~l-~~-lp~-~~~l~~L~--------------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~ 162 (239)
T 2xwt_C 112 IFNTGL-KM-FPD-LTKVYSTD--------------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTLK 162 (239)
T ss_dssp EEEECC-CS-CCC-CTTCCBCC--------------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEE
T ss_pred CCCCCC-cc-ccc-cccccccc--------------------------cccEEECCCCcchhhcCcccccchhcceeEEE
Confidence 555554 21 332 33333333 1125666666 55555555566667777 777
Q ss_pred ccCCcCcccccccccCCCCCCEEECcCCc-CcccChhhhcCC-CCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCC
Q 038320 375 LWGNLFRGSIPESIGNLSSLRELYLHNNL-MDGTIPKSLGKL-SHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKY 451 (467)
Q Consensus 375 l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~-l~~~~p~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n 451 (467)
+++|.++ .+|......++|++|++++|+ +++..+..+..+ ++|+.|++++|++++ +|.. .+++|+.|+++++
T Consensus 163 l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 163 LYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT---TCTTCSEEECTTC
T ss_pred cCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh---HhccCceeeccCc
Confidence 7777766 444433233677777777774 665555666667 777777777777664 3331 4567777777765
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=4e-20 Score=164.36 Aligned_cols=164 Identities=23% Similarity=0.280 Sum_probs=121.3
Q ss_pred CCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCC
Q 038320 114 LKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSL 193 (467)
Q Consensus 114 l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L 193 (467)
.++|++|++++|++++. .+..+.++++|++|++++|++.+..+..+.++++|++|++++|.++.++... +..+++|
T Consensus 27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L 102 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV---FDKLTQL 102 (208)
T ss_dssp CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTTC
T ss_pred CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhH---hcCccCC
Confidence 35889999999998864 5566788999999999999998665666788999999999999888776653 5677788
Q ss_pred CEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEec
Q 038320 194 QYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDL 273 (467)
Q Consensus 194 ~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 273 (467)
++|++++|.+++..+ ..+..+++|++|++++|.+++.++..+..+++|++|++++|.+.+ .+++|+.|++
T Consensus 103 ~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~ 172 (208)
T 2o6s_A 103 KELALNTNQLQSLPD---GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSE 172 (208)
T ss_dssp CEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHH
T ss_pred CEEEcCCCcCcccCH---hHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHH
Confidence 888888887776543 245667777777777777777666666777777777777776543 3456677777
Q ss_pred cCCccccccchhhhCCCC
Q 038320 274 SANNLQGNIPDAFANMTS 291 (467)
Q Consensus 274 ~~n~l~~~~~~~l~~l~~ 291 (467)
+.|.++|.+|..++.++.
T Consensus 173 ~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 173 WINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp HHHHCTTTBBCTTSSBCT
T ss_pred HHHhCCceeeccCccccC
Confidence 777777777766655443
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=4e-20 Score=187.49 Aligned_cols=200 Identities=22% Similarity=0.307 Sum_probs=132.4
Q ss_pred CcccE-EecCCCCCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEE
Q 038320 67 KWEGV-ICDNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYL 145 (467)
Q Consensus 67 ~w~gv-~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L 145 (467)
.|.++ .|.. ++++.+++++ +.+++ +|..+ +++|++|+|++|.++ .+| ..+++|++|
T Consensus 49 ~~~~l~~C~~--~~L~~L~Ls~-------------n~L~~-lp~~l--~~~L~~L~Ls~N~l~--~ip---~~l~~L~~L 105 (571)
T 3cvr_A 49 AVSLLKECLI--NQFSELQLNR-------------LNLSS-LPDNL--PPQITVLEITQNALI--SLP---ELPASLEYL 105 (571)
T ss_dssp HHHHHHHHHH--TTCSEEECCS-------------SCCSC-CCSCC--CTTCSEEECCSSCCS--CCC---CCCTTCCEE
T ss_pred hhhhcccccc--CCccEEEeCC-------------CCCCc-cCHhH--cCCCCEEECcCCCCc--ccc---cccCCCCEE
Confidence 68888 6753 4688888887 67766 66655 378888888888887 366 457888888
Q ss_pred EcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEEC
Q 038320 146 NLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHL 225 (467)
Q Consensus 146 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l 225 (467)
++++|.+++ +|. +.+ +|++|++++|.++.+|. .+++|+.|++++|.+++... .+++|++|++
T Consensus 106 ~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~-------~l~~L~~L~Ls~N~l~~lp~-------~l~~L~~L~L 167 (571)
T 3cvr_A 106 DACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPE-------LPALLEYINADNNQLTMLPE-------LPTSLEVLSV 167 (571)
T ss_dssp ECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSCCCC-------CCTTCCEEEC
T ss_pred EccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCC-------cCccccEEeCCCCccCcCCC-------cCCCcCEEEC
Confidence 888888885 666 554 78888888887776554 35666666666666654321 2445555555
Q ss_pred CCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhC-----CCCCCEEeCCCC
Q 038320 226 PACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFAN-----MTSLRELDLSEN 300 (467)
Q Consensus 226 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-----l~~L~~L~L~~n 300 (467)
++|.+++ +|. +. ++|+.|++++|.++ .+|. +.. .+.|+.|++++|
T Consensus 168 s~N~L~~-------------------------lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~~L~~~~~~L~~L~Ls~N 217 (571)
T 3cvr_A 168 RNNQLTF-------------------------LPE-LP--ESLEALDVSTNLLE-SLPA-VPVRNHHSEETEIFFRCREN 217 (571)
T ss_dssp CSSCCSC-------------------------CCC-CC--TTCCEEECCSSCCS-SCCC-CC--------CCEEEECCSS
T ss_pred CCCCCCC-------------------------cch-hh--CCCCEEECcCCCCC-chhh-HHHhhhcccccceEEecCCC
Confidence 5555444 333 22 44555555555544 3333 222 223388888888
Q ss_pred CCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhh
Q 038320 301 SLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLS 339 (467)
Q Consensus 301 ~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~ 339 (467)
.+ ..+|..+..+++|+.|++++|.+++..|..+..+.
T Consensus 218 ~l--~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 218 RI--THIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CC--CCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred cc--eecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 87 35777777788888888888888888888877765
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=9.1e-20 Score=175.53 Aligned_cols=239 Identities=17% Similarity=0.127 Sum_probs=159.6
Q ss_pred eeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccC-CccccCCCCCcE
Q 038320 168 ILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFP-PLSVVNFSSLLF 246 (467)
Q Consensus 168 ~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~ 246 (467)
+++.+++.++.+|.. + .+++++|+|++|.++.... ..+.++++|++|++++|++.+.+ +..|.+++++++
T Consensus 13 ~v~C~~~~Lt~iP~~----l--~~~l~~L~Ls~N~i~~i~~---~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 13 VFLCQESKVTEIPSD----L--PRNAIELRFVLTKLRVIQK---GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp EEEEESTTCCSCCTT----C--CTTCSEEEEESCCCSEECT---TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred EEEecCCCCCccCcC----c--CCCCCEEEccCCcCCCcCH---HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence 444444445544443 1 1345555555555554331 25677888888888888876544 456788888765
Q ss_pred -EEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCC-CCCCCCCcccccCC-CCCCEEecc
Q 038320 247 -LDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSEN-SLIGGQIPKDLGSL-CNLWDLDLS 323 (467)
Q Consensus 247 -L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~l~~l-~~L~~L~l~ 323 (467)
+.++.|+++...|..+.++++|+.|++++|.+....+..+....++..+++.++ .+ ....+..+..+ ..++.|+++
T Consensus 84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i-~~l~~~~f~~~~~~l~~L~L~ 162 (350)
T 4ay9_X 84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI-HTIERNSFVGLSFESVILWLN 162 (350)
T ss_dssp EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTC-CEECTTSSTTSBSSCEEEECC
T ss_pred hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccc-ccccccchhhcchhhhhhccc
Confidence 556678888766778888999999999999988666666666777888888654 44 33333345555 368888999
Q ss_pred CCcCCCchhhHHHhhhcccCCCccEEECcC-CCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCC
Q 038320 324 GNDLDGEIIEFVDRLSKCANSSLESLDLGQ-NNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNN 402 (467)
Q Consensus 324 ~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~-n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n 402 (467)
+|.++...+..+. .. +|+++++.+ |.++...+..|..+++|++|++++|.++ .+|.. .+.+|+.|.+.++
T Consensus 163 ~N~i~~i~~~~f~-~~-----~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 163 KNGIQEIHNSAFN-GT-----QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARST 233 (350)
T ss_dssp SSCCCEECTTSST-TE-----EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTC
T ss_pred cccccCCChhhcc-cc-----chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccC
Confidence 9888754433332 22 688888875 5566554556788888999999999888 44542 3556777777665
Q ss_pred cCcccChhhhcCCCCCCEEeCcCC
Q 038320 403 LMDGTIPKSLGKLSHLVVLDISGN 426 (467)
Q Consensus 403 ~l~~~~p~~l~~l~~L~~L~l~~n 426 (467)
.-...+| .+..+++|+.+++.++
T Consensus 234 ~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 234 YNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TTCCCCC-CTTTCCSCCEEECSCH
T ss_pred CCcCcCC-CchhCcChhhCcCCCC
Confidence 5444666 4778888888888764
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.7e-19 Score=160.25 Aligned_cols=65 Identities=25% Similarity=0.296 Sum_probs=30.6
Q ss_pred CccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCC
Q 038320 345 SLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLS 416 (467)
Q Consensus 345 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~ 416 (467)
+|++|++++|.+++..+..+..+++|++|++++|.+.+ .+++|+.|+++.|+++|.+|..++.++
T Consensus 125 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 125 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred cCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 44444444444443333334445555555555554432 234455555555555555555444443
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=2.8e-19 Score=172.08 Aligned_cols=245 Identities=19% Similarity=0.164 Sum_probs=142.3
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCC-CCCCChhhcCC
Q 038320 111 VLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSS-LESDDVEWLSR 189 (467)
Q Consensus 111 l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~-l~~~~~~~l~~ 189 (467)
++.|.. ++++.++++++ .+|..+ .+++++|+|++|+++...+..|.++++|++|++++|.+.+ ++... +.+
T Consensus 6 ~C~C~~-~~v~C~~~~Lt--~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~---f~~ 77 (350)
T 4ay9_X 6 ICHCSN-RVFLCQESKVT--EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV---FSN 77 (350)
T ss_dssp SSEEET-TEEEEESTTCC--SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS---BCS
T ss_pred ccEeeC-CEEEecCCCCC--ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH---hhc
Confidence 444433 56777888877 467655 3578888888888884444568888888888888888643 44433 566
Q ss_pred CCCCCE-EECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCC-cCCCCcchhccCC-C
Q 038320 190 LSSLQY-LNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSN-DFNSSIPQWLLNI-S 266 (467)
Q Consensus 190 l~~L~~-L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l-~ 266 (467)
++++++ +.+++|.++...+ ..+..+++|++|++++|++....+..+....++..+++.++ .+....+..+..+ .
T Consensus 78 L~~l~~~l~~~~N~l~~l~~---~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~ 154 (350)
T 4ay9_X 78 LPKLHEIRIEKANNLLYINP---EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF 154 (350)
T ss_dssp CTTCCEEEEEEETTCCEECT---TSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBS
T ss_pred chhhhhhhcccCCcccccCc---hhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcch
Confidence 666654 4455566665542 25566777777777777776666655556666666666553 3332222334443 2
Q ss_pred CCCEEeccCCccccccchhhhCCCCCCEEeCCC-CCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCC
Q 038320 267 KLAHLDLSANNLQGNIPDAFANMTSLRELDLSE-NSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSS 345 (467)
Q Consensus 267 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~ 345 (467)
.++.|++++|.++. ++.......+|+.+++.+ |.+ +...+..|..+++|+.|++++|+++...+..+ .+
T Consensus 155 ~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l-~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~--------~~ 224 (350)
T 4ay9_X 155 ESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNL-EELPNDVFHGASGPVILDISRTRIHSLPSYGL--------EN 224 (350)
T ss_dssp SCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTC-CCCCTTTTTTEECCSEEECTTSCCCCCCSSSC--------TT
T ss_pred hhhhhccccccccC-CChhhccccchhHHhhccCCcc-cCCCHHHhccCcccchhhcCCCCcCccChhhh--------cc
Confidence 46666777776663 333333445666666654 333 22222345666666666666666654322211 24
Q ss_pred ccEEECcCCCCCcCCCccccCCCCCCEEEccC
Q 038320 346 LESLDLGQNNLGGFLPNSLGQLENLKILQLWG 377 (467)
Q Consensus 346 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~ 377 (467)
|+.|.+.++.--..+| .+..+++|+.+++.+
T Consensus 225 L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 225 LKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp CCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred chHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 5555554443222333 245555666666554
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=5.8e-19 Score=179.03 Aligned_cols=186 Identities=27% Similarity=0.378 Sum_probs=106.3
Q ss_pred CCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEE
Q 038320 192 SLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHL 271 (467)
Q Consensus 192 ~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 271 (467)
+|+.|++++|.+++... .+ .++|++|++++|.++..+ ..+++|++|++++|.+++ +|. +.+ +|+.|
T Consensus 60 ~L~~L~Ls~n~L~~lp~----~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L 125 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPD----NL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHL 125 (571)
T ss_dssp TCSEEECCSSCCSCCCS----CC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEE
T ss_pred CccEEEeCCCCCCccCH----hH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEE
Confidence 67777777777766432 12 256777777777776433 345667777777777665 555 433 66777
Q ss_pred eccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEEC
Q 038320 272 DLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDL 351 (467)
Q Consensus 272 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L 351 (467)
++++|.+++ +|. .+++|+.|++++|.+ ++ +|. .+++|+.|++++|.+++ +|. +. ++|+.|++
T Consensus 126 ~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l-~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-------~~L~~L~L 187 (571)
T 3cvr_A 126 DVDNNQLTM-LPE---LPALLEYINADNNQL-TM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP-------ESLEALDV 187 (571)
T ss_dssp ECCSSCCSC-CCC---CCTTCCEEECCSSCC-SC-CCC---CCTTCCEEECCSSCCSC-CCC-CC-------TTCCEEEC
T ss_pred ECCCCcCCC-CCC---cCccccEEeCCCCcc-Cc-CCC---cCCCcCEEECCCCCCCC-cch-hh-------CCCCEEEC
Confidence 777776664 444 456666666666666 32 443 34566666666666655 222 22 25666666
Q ss_pred cCCCCCcCCCccccCCCCC-------CEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcC
Q 038320 352 GQNNLGGFLPNSLGQLENL-------KILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGK 414 (467)
Q Consensus 352 ~~n~i~~~~~~~l~~l~~L-------~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~ 414 (467)
++|+|+ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|+|++|++++.+|..+..
T Consensus 188 s~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 188 STNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred cCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 666665 3333 332 44 55555555555 35555555555555555555555555555444
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=2e-18 Score=155.69 Aligned_cols=162 Identities=23% Similarity=0.256 Sum_probs=107.9
Q ss_pred CCCCCCCCCCcccEEecCCCCCEEEEEcCCCCCCCCcCCCCcccccccccCccccCCCCCCEEeCCCCCCCCCCCCcccC
Q 038320 58 SSWTGEDCCKWEGVICDNSTGKVVQLKLRSPEIPDSFTDNGTTYQLEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLG 137 (467)
Q Consensus 58 ~~w~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~ 137 (467)
..|.+...|.|.+|.|... .+ +.+|..+ .++|++|+|++|.+++. .|..+.
T Consensus 11 ~~~~~~~~Cs~~~v~c~~~-------------------------~l-~~ip~~~--~~~L~~L~Ls~n~i~~~-~~~~~~ 61 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRSK-------------------------RH-ASVPAGI--PTNAQILYLHDNQITKL-EPGVFD 61 (229)
T ss_dssp CCCCTTCEEETTEEECTTS-------------------------CC-SSCCSCC--CTTCSEEECCSSCCCCC-CTTTTT
T ss_pred ccCCCCCEEeCCEeEccCC-------------------------Cc-CccCCCC--CCCCCEEEcCCCccCcc-CHHHhh
Confidence 3456778899999999642 11 1233322 27899999999999876 678888
Q ss_pred CCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCC
Q 038320 138 SLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNML 217 (467)
Q Consensus 138 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l 217 (467)
++++|++|++++|.+....+..+.++++|++|++++|.++.++... +..+++|++|++++|.++... ..+..+
T Consensus 62 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~---~~~l~~L~~L~Ls~N~l~~lp----~~~~~l 134 (229)
T 3e6j_A 62 SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAV---FDRLVHLKELFMCCNKLTELP----RGIERL 134 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTTCCEEECCSSCCCSCC----TTGGGC
T ss_pred CccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhH---hCcchhhCeEeccCCcccccC----cccccC
Confidence 8999999999999987555566788888888888888888776553 456666666666666665332 233445
Q ss_pred CCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCC
Q 038320 218 PSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFN 255 (467)
Q Consensus 218 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 255 (467)
++|+.|++++|++.+..+..+..+++|+.|++++|.+.
T Consensus 135 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 135 THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 55555555555555544444445555555555555444
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=5.8e-19 Score=180.94 Aligned_cols=171 Identities=25% Similarity=0.317 Sum_probs=127.7
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCC
Q 038320 111 VLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRL 190 (467)
Q Consensus 111 l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l 190 (467)
+..+++|++|++++|.+.. ++ .+..+++|++|+|++|.+.+.. . +..+++|++|++++|.+..++. +..+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~-~-l~~l~~L~~L~Ls~N~l~~l~~-----l~~l 108 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIK-P-LTNLKNLGWLFLDENKIKDLSS-----LKDL 108 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCG-G-GGGCTTCCEEECCSSCCCCCTT-----STTC
T ss_pred hhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCCh-h-hccCCCCCEEECcCCCCCCChh-----hccC
Confidence 4577888888888888873 33 4777888888888888887543 3 7888888888888888876542 7778
Q ss_pred CCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCE
Q 038320 191 SSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAH 270 (467)
Q Consensus 191 ~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 270 (467)
++|+.|+|++|.+.... .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..| +..+++|+.
T Consensus 109 ~~L~~L~Ls~N~l~~l~-----~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~ 179 (605)
T 1m9s_A 109 KKLKSLSLEHNGISDIN-----GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 179 (605)
T ss_dssp TTCCEEECTTSCCCCCG-----GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred CCCCEEEecCCCCCCCc-----cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCE
Confidence 88888888888877642 466777888888888877765 456777777788887777776555 677777777
Q ss_pred EeccCCccccccchhhhCCCCCCEEeCCCCCC
Q 038320 271 LDLSANNLQGNIPDAFANMTSLRELDLSENSL 302 (467)
Q Consensus 271 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 302 (467)
|+|++|.+++. ..+..+++|+.|+|++|.+
T Consensus 180 L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 180 LYLSKNHISDL--RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp EECCSSCCCBC--GGGTTCTTCSEEECCSEEE
T ss_pred EECcCCCCCCC--hHHccCCCCCEEEccCCcC
Confidence 77777777653 3467777777777777776
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=2e-18 Score=161.59 Aligned_cols=173 Identities=24% Similarity=0.351 Sum_probs=123.2
Q ss_pred cCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCC
Q 038320 214 TNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLR 293 (467)
Q Consensus 214 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 293 (467)
...+++|+.|++++|.+.... .+..+++|++|++++|.+++..+ +.++++|+.|++++|.+++ ++ .+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCC
Confidence 345677888888888877653 46778888888888888875443 7778888888888888774 23 377788888
Q ss_pred EEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEE
Q 038320 294 ELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKIL 373 (467)
Q Consensus 294 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L 373 (467)
+|++++|.+ .+ + ..+..+++|+.|++++|.+++. ..+..++ +|+.|++++|.+++..+ +..+++|++|
T Consensus 116 ~L~L~~n~i-~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~-----~L~~L~L~~N~l~~~~~--l~~l~~L~~L 183 (291)
T 1h6t_A 116 SLSLEHNGI-SD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLT-----KLDTLSLEDNQISDIVP--LAGLTKLQNL 183 (291)
T ss_dssp EEECTTSCC-CC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCT-----TCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred EEECCCCcC-CC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCC-----CCCEEEccCCccccchh--hcCCCccCEE
Confidence 888888877 33 2 4567777888888888877764 3334433 77778887777776543 6777777777
Q ss_pred EccCCcCcccccccccCCCCCCEEECcCCcCcc
Q 038320 374 QLWGNLFRGSIPESIGNLSSLRELYLHNNLMDG 406 (467)
Q Consensus 374 ~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~ 406 (467)
++++|.+++ ++ .+..+++|+.|++++|++++
T Consensus 184 ~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 184 YLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred ECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 777777764 33 36777777777777777764
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=9.9e-19 Score=163.63 Aligned_cols=172 Identities=27% Similarity=0.348 Sum_probs=94.1
Q ss_pred cCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCC
Q 038320 112 LDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLS 191 (467)
Q Consensus 112 ~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~ 191 (467)
..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++ ++. +.++++|++|++++|.++.++. +..++
T Consensus 43 ~~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-----l~~l~ 112 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKDLSS-----LKDLK 112 (291)
T ss_dssp HHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCGGG-----GTTCT
T ss_pred hhcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCCChh-----hccCC
Confidence 456667777777776653 33 35666777777777777664 333 6666667777766666654321 45555
Q ss_pred CCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEE
Q 038320 192 SLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHL 271 (467)
Q Consensus 192 ~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 271 (467)
+|++|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|+.|
T Consensus 113 ~L~~L~L~~n~i~~~-----------------------------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 161 (291)
T 1h6t_A 113 KLKSLSLEHNGISDI-----------------------------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL 161 (291)
T ss_dssp TCCEEECTTSCCCCC-----------------------------GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred CCCEEECCCCcCCCC-----------------------------hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEE
Confidence 555555555555443 1233444445555555544432 334455555555
Q ss_pred eccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCC
Q 038320 272 DLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDG 329 (467)
Q Consensus 272 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~ 329 (467)
++++|.+++..+ +..+++|++|++++|.+ + .++ .+..+++|+.|++++|.++.
T Consensus 162 ~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i-~-~l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 162 SLEDNQISDIVP--LAGLTKLQNLYLSKNHI-S-DLR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ECCSSCCCCCGG--GTTCTTCCEEECCSSCC-C-BCG-GGTTCTTCSEEEEEEEEEEC
T ss_pred EccCCccccchh--hcCCCccCEEECCCCcC-C-CCh-hhccCCCCCEEECcCCcccC
Confidence 555555553332 55555555555555555 2 222 25555666666666655543
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=155.22 Aligned_cols=156 Identities=24% Similarity=0.255 Sum_probs=102.1
Q ss_pred CEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCc-ccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCcc
Q 038320 269 AHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIP-KDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLE 347 (467)
Q Consensus 269 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~ 347 (467)
+.+++++|.++ .+|..+ .+.++.|++++|.+ .+..+ ..+..+++|+.|++++|.+++..+..+..+. +|+
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l-~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-----~L~ 84 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEF-TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-----GVN 84 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCC-CEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-----TCC
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcC-CccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC-----CCC
Confidence 46777777776 345433 23466777777777 33322 3466677777777777777665555555544 677
Q ss_pred EEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCC
Q 038320 348 SLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNP 427 (467)
Q Consensus 348 ~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~ 427 (467)
+|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|+|++|++++..|..+..+++|+.|++++|+
T Consensus 85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 77777777766666666677777777777777776666666677777777777777766666667677777777777777
Q ss_pred CcccCC
Q 038320 428 WIGLVT 433 (467)
Q Consensus 428 ~~~~~~ 433 (467)
+....+
T Consensus 165 l~c~c~ 170 (220)
T 2v70_A 165 FNCNCY 170 (220)
T ss_dssp EECSGG
T ss_pred CcCCCc
Confidence 665443
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=1.1e-18 Score=178.87 Aligned_cols=191 Identities=23% Similarity=0.292 Sum_probs=117.2
Q ss_pred CCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCC
Q 038320 140 EKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPS 219 (467)
Q Consensus 140 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~ 219 (467)
.++..+++..+.+.+.++ +..+++|+.|++++|.+..++. +..+++|+.|+|++|.+.+.. .+..+++
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~~-----l~~l~~L~~L~Ls~N~l~~~~-----~l~~l~~ 88 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG-----IQYLPNVTKLFLNGNKLTDIK-----PLTNLKN 88 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCTT-----GGGCTTCCEEECTTSCCCCCG-----GGGGCTT
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCChH-----HccCCCCCEEEeeCCCCCCCh-----hhccCCC
Confidence 345555666666653332 4567788888888888776642 667777777777777776654 2556777
Q ss_pred CCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCC
Q 038320 220 LSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSE 299 (467)
Q Consensus 220 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 299 (467)
|+.|++++|.+.+.. .+..+++|+.|++++|.+.+ + ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++
T Consensus 89 L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~ 162 (605)
T 1m9s_A 89 LGWLFLDENKIKDLS--SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED 162 (605)
T ss_dssp CCEEECCSSCCCCCT--TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCS
T ss_pred CCEEECcCCCCCCCh--hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcC
Confidence 777777777766532 46666667777777766654 2 3355666666666666666643 4456666666666666
Q ss_pred CCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCc
Q 038320 300 NSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGG 358 (467)
Q Consensus 300 n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~ 358 (467)
|.+ .+..+ +..+++|+.|++++|.+++. ..+..+ ++|+.|+|++|.+++
T Consensus 163 N~l-~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l-----~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 163 NQI-SDIVP--LAGLTKLQNLYLSKNHISDL--RALAGL-----KNLDVLELFSQECLN 211 (605)
T ss_dssp SCC-CCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTC-----TTCSEEECCSEEEEC
T ss_pred CcC-CCchh--hccCCCCCEEECcCCCCCCC--hHHccC-----CCCCEEEccCCcCcC
Confidence 666 33333 55666666666666666542 122222 256666666665554
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=3.8e-18 Score=152.77 Aligned_cols=153 Identities=22% Similarity=0.299 Sum_probs=91.8
Q ss_pred CEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccE
Q 038320 269 AHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLES 348 (467)
Q Consensus 269 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~ 348 (467)
+.++.+++.++ .+|..+. ++++.|++++|.+ .+..+..+..+++|+.|++++|.+++..+..+..+. +|++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i-~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-----~L~~ 84 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-----SLNS 84 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCC-CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS-----SCCE
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcC-CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-----CCCE
Confidence 45666666665 3444332 4667777777766 444444566666666666666666655555555444 6666
Q ss_pred EECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCC
Q 038320 349 LDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPW 428 (467)
Q Consensus 349 L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~ 428 (467)
|++++|.++...+..+..+++|++|++++|.+++..|..|..+++|++|+|++|++++..+..+..+++|+.|++++|++
T Consensus 85 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 85 LVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred EECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 66666666654444556666666666666666655555566666666666666666655555566666666666666665
Q ss_pred cc
Q 038320 429 IG 430 (467)
Q Consensus 429 ~~ 430 (467)
..
T Consensus 165 ~c 166 (220)
T 2v9t_B 165 IC 166 (220)
T ss_dssp EC
T ss_pred CC
Confidence 43
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=6e-18 Score=151.48 Aligned_cols=156 Identities=22% Similarity=0.296 Sum_probs=134.2
Q ss_pred cEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccc-hhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecc
Q 038320 245 LFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIP-DAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLS 323 (467)
Q Consensus 245 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~ 323 (467)
+.+++++|.++ .+|..+. ..++.|++++|.+++..+ ..+..+++|++|++++|.+ ++..+..+..+++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcC-CEECHHHhCCCCCCCEEECC
Confidence 58999999887 4676553 457899999999987754 4578999999999999998 66666688999999999999
Q ss_pred CCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCc
Q 038320 324 GNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNL 403 (467)
Q Consensus 324 ~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~ 403 (467)
+|.+++..+..+..+. +|++|++++|++++..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.
T Consensus 90 ~N~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 90 SNRLENVQHKMFKGLE-----SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SSCCCCCCGGGGTTCS-----SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCccCccCHhHhcCCc-----CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 9999988887777665 89999999999998888999999999999999999998888899999999999999999
Q ss_pred CcccCh
Q 038320 404 MDGTIP 409 (467)
Q Consensus 404 l~~~~p 409 (467)
+.+..+
T Consensus 165 l~c~c~ 170 (220)
T 2v70_A 165 FNCNCY 170 (220)
T ss_dssp EECSGG
T ss_pred CcCCCc
Confidence 876533
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=1.6e-17 Score=149.81 Aligned_cols=156 Identities=28% Similarity=0.358 Sum_probs=115.6
Q ss_pred CCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCcc
Q 038320 268 LAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLE 347 (467)
Q Consensus 268 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~ 347 (467)
-+.++.+++.++ .+|..+ .++|++|++++|.+ .+..+..+..+++|+.|++++|.++...+..+..++ +|+
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~-----~L~ 91 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQI-TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT-----QLT 91 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCC
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCcc-CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC-----CcC
Confidence 456777777776 455433 37788888888888 666677778888888888888888765555555554 788
Q ss_pred EEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCC
Q 038320 348 SLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNP 427 (467)
Q Consensus 348 ~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~ 427 (467)
+|++++|++++..+..+..+++|++|++++|.++ .+|..+..+++|++|+|++|++++..+..+..+++|+.|++++|+
T Consensus 92 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 92 VLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 8888888887666666777888888888888877 667777778888888888888876655667778888888888888
Q ss_pred CcccCC
Q 038320 428 WIGLVT 433 (467)
Q Consensus 428 ~~~~~~ 433 (467)
+....+
T Consensus 171 ~~c~c~ 176 (229)
T 3e6j_A 171 WDCECR 176 (229)
T ss_dssp BCTTBG
T ss_pred ccCCcc
Confidence 776543
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=8.5e-18 Score=150.50 Aligned_cols=153 Identities=24% Similarity=0.347 Sum_probs=133.0
Q ss_pred cEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccC
Q 038320 245 LFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSG 324 (467)
Q Consensus 245 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~ 324 (467)
+.++++++.++ .+|..+. ++++.|++++|.+++..+..+..+++|+.|++++|++ .+..+..+..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i-~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCC-CEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcC-CCcCHHHhhCCcCCCEEECCC
Confidence 57888888887 5666553 6899999999999977777899999999999999998 666788899999999999999
Q ss_pred CcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcC
Q 038320 325 NDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLM 404 (467)
Q Consensus 325 n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l 404 (467)
|.++...+..+..+. +|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 90 N~l~~l~~~~f~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 90 NKITELPKSLFEGLF-----SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SCCCCCCTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CcCCccCHhHccCCC-----CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 999976666666555 899999999999988888999999999999999999977777788999999999999988
Q ss_pred cc
Q 038320 405 DG 406 (467)
Q Consensus 405 ~~ 406 (467)
..
T Consensus 165 ~c 166 (220)
T 2v9t_B 165 IC 166 (220)
T ss_dssp EC
T ss_pred CC
Confidence 64
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=3.7e-18 Score=150.22 Aligned_cols=153 Identities=20% Similarity=0.201 Sum_probs=103.7
Q ss_pred CCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCC
Q 038320 288 NMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQL 367 (467)
Q Consensus 288 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l 367 (467)
.+++|+.|++++|.+ . .++ .+..+++|++|++++|.++. +..+..++ +|++|++++|.+++..+..+..+
T Consensus 42 ~l~~L~~L~l~~n~i-~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~-----~L~~L~l~~n~l~~~~~~~l~~l 111 (197)
T 4ezg_A 42 QMNSLTYITLANINV-T-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLS-----NLERLRIMGKDVTSDKIPNLSGL 111 (197)
T ss_dssp HHHTCCEEEEESSCC-S-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCT-----TCCEEEEECTTCBGGGSCCCTTC
T ss_pred hcCCccEEeccCCCc-c-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCC-----CCCEEEeECCccCcccChhhcCC
Confidence 445556666666655 2 333 45556666666666664433 22333333 67777777777776667777888
Q ss_pred CCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEe
Q 038320 368 ENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELH 447 (467)
Q Consensus 368 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~ 447 (467)
++|++|++++|.+++..+..+..+++|++|++++|...+.+| .+..+++|++|++++|++++.. .+..+++|+.|+
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~ 187 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLY 187 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEE
T ss_pred CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH---HhccCCCCCEEE
Confidence 888888888888887777778888888888888887333555 5778888888888888877632 466788888888
Q ss_pred ccCCCCC
Q 038320 448 IAKYSLA 454 (467)
Q Consensus 448 l~~n~i~ 454 (467)
+++|+|.
T Consensus 188 l~~N~i~ 194 (197)
T 4ezg_A 188 AFSQTIG 194 (197)
T ss_dssp ECBC---
T ss_pred eeCcccC
Confidence 8888664
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=5.9e-18 Score=163.49 Aligned_cols=176 Identities=28% Similarity=0.303 Sum_probs=90.7
Q ss_pred CEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhcc-CCCCCCEEeccCCccccccchhhhCCCCCCEEeCCC
Q 038320 221 SELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLL-NISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSE 299 (467)
Q Consensus 221 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 299 (467)
+.++++++.+...+. .+ .+.++.|++++|.+++..+..+. ++++|+.|++++|.+++..+..+.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~iP~-~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ-SL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCS-SC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCc-cC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 456666666655432 21 23456666666666554444454 566666666666666655555566666666666666
Q ss_pred CCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccc---cCCCCCCEEEcc
Q 038320 300 NSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSL---GQLENLKILQLW 376 (467)
Q Consensus 300 n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l---~~l~~L~~L~l~ 376 (467)
|++ ....+..+..+++|+.|++++|.+++..+..+..+. +|+.|+|++|++++..+..+ ..+++|+.|+++
T Consensus 98 N~l-~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-----~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 98 NHL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA-----QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp SCC-CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-----TCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred CcC-CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc-----cCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence 665 333334455555555555555555544444444433 55555555555554332223 334555555555
Q ss_pred CCcCcccccccccCCCC--CCEEECcCCcCc
Q 038320 377 GNLFRGSIPESIGNLSS--LRELYLHNNLMD 405 (467)
Q Consensus 377 ~n~l~~~~~~~l~~~~~--L~~L~Ls~n~l~ 405 (467)
+|.+++..+..+..++. ++.|+|++|.+.
T Consensus 172 ~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp SSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 55555333333444443 244555555443
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=6e-18 Score=163.44 Aligned_cols=177 Identities=30% Similarity=0.215 Sum_probs=127.7
Q ss_pred cEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhh-CCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecc
Q 038320 245 LFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFA-NMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLS 323 (467)
Q Consensus 245 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~ 323 (467)
+.++++++.++ .+|..+. +.++.|++++|.+++..+..+. ++++|++|++++|.+ .+..+..+..+++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcC-CccChhhccCCCCCCEEECC
Confidence 57888888886 4665443 4588888888888877676676 788888888888888 55555677888888888888
Q ss_pred CCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccc---cCCCCCCEEECc
Q 038320 324 GNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESI---GNLSSLRELYLH 400 (467)
Q Consensus 324 ~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l---~~~~~L~~L~Ls 400 (467)
+|.+++..+..+..+. +|++|+|++|++++..+..|..+++|++|++++|.+++..+..+ ..+++|+.|+|+
T Consensus 97 ~N~l~~~~~~~~~~l~-----~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQ-----ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp SSCCCEECTTTTTTCT-----TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred CCcCCcCCHHHhCCCc-----CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence 8888766555555554 77888888888777667777777788888888887774333333 457777777777
Q ss_pred CCcCcccChhhhcCCCC--CCEEeCcCCCCcc
Q 038320 401 NNLMDGTIPKSLGKLSH--LVVLDISGNPWIG 430 (467)
Q Consensus 401 ~n~l~~~~p~~l~~l~~--L~~L~l~~n~~~~ 430 (467)
+|++++..+..+..++. ++.|++++|++..
T Consensus 172 ~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp SSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 77777555566666665 3777777777654
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1.2e-17 Score=146.86 Aligned_cols=154 Identities=16% Similarity=0.256 Sum_probs=79.7
Q ss_pred CCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCC
Q 038320 137 GSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNM 216 (467)
Q Consensus 137 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~ 216 (467)
+.+++|++|++++|.+. .+| .+..+++|++|++++|.+..++ .+..
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~--------------------------------~l~~ 86 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYN--------------------------------PISG 86 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCG--------------------------------GGTT
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcch--------------------------------hhhc
Confidence 44566666666666665 444 3555556666666555433221 3334
Q ss_pred CCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEe
Q 038320 217 LPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELD 296 (467)
Q Consensus 217 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 296 (467)
+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|...+.++ .+..+++|++|+
T Consensus 87 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~ 165 (197)
T 4ezg_A 87 LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLN 165 (197)
T ss_dssp CTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEE
T ss_pred CCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEE
Confidence 4445555555555544444445555555555555555555455555555566666666555222333 355556666666
Q ss_pred CCCCCCCCCCCcccccCCCCCCEEeccCCcCC
Q 038320 297 LSENSLIGGQIPKDLGSLCNLWDLDLSGNDLD 328 (467)
Q Consensus 297 L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~ 328 (467)
+++|.+ .+ ++ .+..+++|+.|++++|.+.
T Consensus 166 l~~n~i-~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 166 IQFDGV-HD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CTTBCC-CC-CT-TGGGCSSCCEEEECBC---
T ss_pred CCCCCC-cC-hH-HhccCCCCCEEEeeCcccC
Confidence 666655 22 22 4455555555555555543
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=2.4e-18 Score=180.67 Aligned_cols=113 Identities=28% Similarity=0.403 Sum_probs=61.1
Q ss_pred CCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEe
Q 038320 242 SSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLD 321 (467)
Q Consensus 242 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 321 (467)
++|++|+|++|.++ .+|..+.++++|+.|+|++|.++ .+|..++.+++|++|+|++|.+ +.+|..++.+++|+.|+
T Consensus 247 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l--~~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 247 DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMV--TTLPWEFGNLCNLQFLG 322 (727)
T ss_dssp CSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCC--CCCCSSTTSCTTCCCEE
T ss_pred CCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCC--CccChhhhcCCCccEEe
Confidence 34444444444444 44444455555555555555555 4455555566666666666655 24555566666666666
Q ss_pred ccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCc
Q 038320 322 LSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPN 362 (467)
Q Consensus 322 l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~ 362 (467)
|++|.+++.+|..+..... .+..+++++|.+++.+|.
T Consensus 323 L~~N~l~~~~p~~~~~~~~----~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 323 VEGNPLEKQFLKILTEKSV----TGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CTTSCCCSHHHHHHHHHHH----HHHHHHHHHCCCCCCCCC
T ss_pred CCCCccCCCChHHHhhcch----hhhHHhhccCcccCcCcc
Confidence 6666666666665544321 122355666666655543
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=2.4e-17 Score=151.73 Aligned_cols=171 Identities=25% Similarity=0.335 Sum_probs=139.5
Q ss_pred CCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCE
Q 038320 240 NFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWD 319 (467)
Q Consensus 240 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 319 (467)
.+.++..++++++.+++ ++ .+..+++|+.|++++|.++. ++ .+..+++|++|++++|.+ ++ ++. +..+++|+.
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i-~~-~~~-l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQI-SD-LSP-LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCC-CC-CGG-GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCcc-CC-Chh-hccCCCCCE
Confidence 45667778888888874 33 46788999999999999884 44 688899999999999998 44 343 889999999
Q ss_pred EeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEEC
Q 038320 320 LDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYL 399 (467)
Q Consensus 320 L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L 399 (467)
|++++|.+++..+.. . ++|+.|++++|++++. ..+..+++|++|++++|.+++. + .+..+++|+.|++
T Consensus 90 L~L~~N~l~~l~~~~--~------~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L 157 (263)
T 1xeu_A 90 LSVNRNRLKNLNGIP--S------ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDL 157 (263)
T ss_dssp EECCSSCCSCCTTCC--C------SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEEC
T ss_pred EECCCCccCCcCccc--c------CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEEC
Confidence 999999988633211 1 3899999999999864 4688999999999999999854 4 6888999999999
Q ss_pred cCCcCcccChhhhcCCCCCCEEeCcCCCCccc
Q 038320 400 HNNLMDGTIPKSLGKLSHLVVLDISGNPWIGL 431 (467)
Q Consensus 400 s~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~ 431 (467)
++|++++. ..+..+++|+.|++++|++++.
T Consensus 158 ~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 158 HGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 99999866 6788899999999999998765
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=5.7e-17 Score=149.27 Aligned_cols=148 Identities=21% Similarity=0.302 Sum_probs=74.4
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCC
Q 038320 111 VLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRL 190 (467)
Q Consensus 111 l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l 190 (467)
+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++ ++. +.++++|++|++++|.++.++.. ..
T Consensus 37 ~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~l~~~-----~~- 105 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKNLNGI-----PS- 105 (263)
T ss_dssp HHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSCCTTC-----CC-
T ss_pred hhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCCcCcc-----cc-
Confidence 4455556666666555552 33 44555556666666555553 222 55555555555555555544331 11
Q ss_pred CCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCE
Q 038320 191 SSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAH 270 (467)
Q Consensus 191 ~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 270 (467)
++|++|++++|.+ ++. ..+..+++|++|++++|.+++. + .+..+++|+.
T Consensus 106 ~~L~~L~L~~N~l---------------------------~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~ 154 (263)
T 1xeu_A 106 ACLSRLFLDNNEL---------------------------RDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEV 154 (263)
T ss_dssp SSCCEEECCSSCC---------------------------SBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCE
T ss_pred CcccEEEccCCcc---------------------------CCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCE
Confidence 4455555555544 442 1244455555555555554432 2 3444555555
Q ss_pred EeccCCccccccchhhhCCCCCCEEeCCCCCC
Q 038320 271 LDLSANNLQGNIPDAFANMTSLRELDLSENSL 302 (467)
Q Consensus 271 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 302 (467)
|++++|.+++. ..+..+++|+.|++++|.+
T Consensus 155 L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 155 LDLHGNEITNT--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp EECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred EECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence 55555555433 3345555555555555554
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=8.5e-20 Score=185.99 Aligned_cols=123 Identities=27% Similarity=0.363 Sum_probs=78.0
Q ss_pred CCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCC
Q 038320 316 NLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLR 395 (467)
Q Consensus 316 ~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~ 395 (467)
.|+.|++++|.+++ +|. +..+. +|+.|++++|.++ .+|..++.+++|++|++++|.+++ +| .++.+++|+
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~-----~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~ 511 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLL-----LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQ 511 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGT-----TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCC
T ss_pred CceEEEecCCCCCC-CcC-ccccc-----cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCc
Confidence 35666666666654 232 44443 6666777766666 556666777777777777777764 55 566777777
Q ss_pred EEECcCCcCcccC-hhhhcCCCCCCEEeCcCCCCcccCChh--hhCCCCCCCEEec
Q 038320 396 ELYLHNNLMDGTI-PKSLGKLSHLVVLDISGNPWIGLVTEV--HFSKLKNLKELHI 448 (467)
Q Consensus 396 ~L~Ls~n~l~~~~-p~~l~~l~~L~~L~l~~n~~~~~~~~~--~~~~l~~L~~l~l 448 (467)
.|+|++|++++.. |..+..+++|+.|++++|++++.++.. .+..+++|+.|++
T Consensus 512 ~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 7777777776555 677777777777777777766654421 2334667776653
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=5.6e-19 Score=179.96 Aligned_cols=184 Identities=20% Similarity=0.198 Sum_probs=136.9
Q ss_pred CCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCC-------------CCCCCCcccccCCCCCCEEe-ccCCcCCC
Q 038320 264 NISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENS-------------LIGGQIPKDLGSLCNLWDLD-LSGNDLDG 329 (467)
Q Consensus 264 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-------------l~~~~~~~~l~~l~~L~~L~-l~~n~l~~ 329 (467)
.+++|+.|++++|.++ .+|..++++++|+.|++++|. . .+..|..++.+++|+.|+ ++.|.+..
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~-~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDP-LLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCT-GGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhccc-ccCCHHHHHHHHhcccCcchhhcccch
Confidence 3455555555555554 445555555555555554432 2 345566677777777777 55554332
Q ss_pred chhh-----HHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcC
Q 038320 330 EIIE-----FVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLM 404 (467)
Q Consensus 330 ~~~~-----~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l 404 (467)
.... .+..+ ....|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..++.+++|+.|+|++|.+
T Consensus 425 L~~l~l~~n~i~~l---~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 498 (567)
T 1dce_A 425 LRSKFLLENSVLKM---EYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL 498 (567)
T ss_dssp HHHHHHHHHHHHHH---HHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC
T ss_pred hhhhhhhccccccc---CccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCC
Confidence 1111 11221 12369999999999997 565 999999999999999999 8899999999999999999999
Q ss_pred cccChhhhcCCCCCCEEeCcCCCCcccC-ChhhhCCCCCCCEEeccCCCCCCCcc
Q 038320 405 DGTIPKSLGKLSHLVVLDISGNPWIGLV-TEVHFSKLKNLKELHIAKYSLAPRLT 458 (467)
Q Consensus 405 ~~~~p~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~l~l~~n~i~~~~~ 458 (467)
++ +| .+..+++|++|++++|++++.. |. .+..+++|+.|+|++|+++..+.
T Consensus 499 ~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~-~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 499 EN-VD-GVANLPRLQELLLCNNRLQQSAAIQ-PLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CC-CG-GGTTCSSCCEEECCSSCCCSSSTTG-GGGGCTTCCEEECTTSGGGGSSS
T ss_pred CC-Cc-ccCCCCCCcEEECCCCCCCCCCCcH-HHhcCCCCCEEEecCCcCCCCcc
Confidence 96 77 8999999999999999999887 77 79999999999999998875543
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=1.8e-16 Score=135.59 Aligned_cols=135 Identities=25% Similarity=0.224 Sum_probs=81.8
Q ss_pred CCCCEEeccCCcCC-CchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCC
Q 038320 315 CNLWDLDLSGNDLD-GEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSS 393 (467)
Q Consensus 315 ~~L~~L~l~~n~l~-~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~ 393 (467)
++|+.|++++|.++ +.+|..+..++ +|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~-----~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFV-----NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGG-----GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCC-----CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 34444444444443 23333333333 555666666655543 45666677777777777777656666666777
Q ss_pred CCEEECcCCcCccc-ChhhhcCCCCCCEEeCcCCCCcccCC--hhhhCCCCCCCEEeccCCCCCCC
Q 038320 394 LRELYLHNNLMDGT-IPKSLGKLSHLVVLDISGNPWIGLVT--EVHFSKLKNLKELHIAKYSLAPR 456 (467)
Q Consensus 394 L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~l~~L~~l~l~~n~i~~~ 456 (467)
|++|++++|.+++. .+..+..+++|+.|++++|++++..+ ...+..+++|+.|++++|++.+.
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 77777777777643 22566777777777777777766555 12566777777777777766544
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=9.9e-17 Score=152.90 Aligned_cols=219 Identities=15% Similarity=0.116 Sum_probs=134.0
Q ss_pred CCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCcc----ccccchhhhCCCCC
Q 038320 217 LPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNL----QGNIPDAFANMTSL 292 (467)
Q Consensus 217 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l----~~~~~~~l~~l~~L 292 (467)
+++|+++++.. .+.......|.++++|+.+++..|.+....+..|.++.++..+....+.. .......+.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 44444444444 44444444455555555555555544433334444444444443333111 11112223344455
Q ss_pred C-EEeCCCCCCCCCCCcccc----cCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCC
Q 038320 293 R-ELDLSENSLIGGQIPKDL----GSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQL 367 (467)
Q Consensus 293 ~-~L~L~~n~l~~~~~~~~l----~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l 367 (467)
+ .+.+... +.++..+ ....+++.+.+.++- .......+.. .+++|+.+++++|+++......|.++
T Consensus 179 ~~~i~~~~~----~~l~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~l~~----~~~~L~~l~L~~n~i~~I~~~aF~~~ 249 (329)
T 3sb4_A 179 ETTIQVGAM----GKLEDEIMKAGLQPRDINFLTIEGKL-DNADFKLIRD----YMPNLVSLDISKTNATTIPDFTFAQK 249 (329)
T ss_dssp EEEEEECTT----CCHHHHHHHTTCCGGGCSEEEEEECC-CHHHHHHHHH----HCTTCCEEECTTBCCCEECTTTTTTC
T ss_pred ceeEEecCC----CcHHHHHhhcccCccccceEEEeeee-cHHHHHHHHH----hcCCCeEEECCCCCcceecHhhhhCC
Confidence 4 3333322 1122211 123456666666542 2222222222 12489999999999997777889999
Q ss_pred CCCCEEEccCCcCcccccccccCCCCCC-EEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEE
Q 038320 368 ENLKILQLWGNLFRGSIPESIGNLSSLR-ELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKEL 446 (467)
Q Consensus 368 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~-~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l 446 (467)
++|+.|++.+| ++...+..|.+|++|+ .+++.+ .++...+..|.+|++|+.+++++|++....+. .|.++++|+.+
T Consensus 250 ~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~-aF~~~~~L~~l 326 (329)
T 3sb4_A 250 KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDE-LFGNGVPSKLI 326 (329)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTT-TTCTTCCCCEE
T ss_pred CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchh-hhcCCcchhhh
Confidence 99999999998 6656667799999999 999998 77766678999999999999999997765555 89999999988
Q ss_pred ec
Q 038320 447 HI 448 (467)
Q Consensus 447 ~l 448 (467)
..
T Consensus 327 y~ 328 (329)
T 3sb4_A 327 YK 328 (329)
T ss_dssp EC
T ss_pred cc
Confidence 64
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=2.1e-16 Score=138.23 Aligned_cols=133 Identities=26% Similarity=0.375 Sum_probs=104.8
Q ss_pred CEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhh-HHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCC
Q 038320 293 RELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIE-FVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLK 371 (467)
Q Consensus 293 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~ 371 (467)
+.++++++.+ +.+|..+. .+++.|++++|.+++..+. .+..+. +|++|++++|++++..|..+..+++|+
T Consensus 11 ~~l~~s~~~l--~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 81 (192)
T 1w8a_A 11 TTVDCTGRGL--KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLP-----HLVKLELKRNQLTGIEPNAFEGASHIQ 81 (192)
T ss_dssp TEEECTTSCC--SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCT-----TCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CEEEcCCCCc--CcCccCCC--CCCCEEECCCCcCCccCCccccccCC-----CCCEEECCCCCCCCcCHhHcCCcccCC
Confidence 6788888887 55666543 3788888888888776654 355554 788888888888887788888888888
Q ss_pred EEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCCh
Q 038320 372 ILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTE 434 (467)
Q Consensus 372 ~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~ 434 (467)
+|++++|.+++..+..+..+++|++|+|++|++++..|..+..+++|++|++++|++.+..+.
T Consensus 82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 888888888877777788888888888888888888888888888888888888888776553
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=8.5e-16 Score=134.38 Aligned_cols=171 Identities=23% Similarity=0.319 Sum_probs=130.8
Q ss_pred CEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcc-cccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCcc
Q 038320 269 AHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPK-DLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLE 347 (467)
Q Consensus 269 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~ 347 (467)
+.++++++.++ .+|..+. +++++|++++|.+ .+..+. .+..+++|++|++++|.+++..+..+..+. +|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~ 81 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-----HIQ 81 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCC-CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT-----TCC
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcC-CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc-----cCC
Confidence 78999999986 5666543 3899999999998 544443 488999999999999999998888887776 899
Q ss_pred EEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhh-hcCCCCCCEEeCcCC
Q 038320 348 SLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKS-LGKLSHLVVLDISGN 426 (467)
Q Consensus 348 ~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~l~~n 426 (467)
+|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+.. +.. .++...+.++
T Consensus 82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~~~ 159 (192)
T 1w8a_A 82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGG 159 (192)
T ss_dssp EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGG
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCCCC
Confidence 9999999999988888999999999999999999988999999999999999999998765421 111 1222233344
Q ss_pred CCcccCChhhhCCCCCCCEEeccCCCCC
Q 038320 427 PWIGLVTEVHFSKLKNLKELHIAKYSLA 454 (467)
Q Consensus 427 ~~~~~~~~~~~~~l~~L~~l~l~~n~i~ 454 (467)
......|. .+......++..+.+.
T Consensus 160 ~~~C~~P~----~l~~~~l~~l~~~~~~ 183 (192)
T 1w8a_A 160 AARCGAPS----KVRDVQIKDLPHSEFK 183 (192)
T ss_dssp GCBBCSST----TTTTSBGGGSCTTTCC
T ss_pred CCCCCCCh----HHcCCChhhCcHhhcC
Confidence 33433443 3444555566666443
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=2.2e-17 Score=173.38 Aligned_cols=180 Identities=23% Similarity=0.216 Sum_probs=94.6
Q ss_pred CcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHH
Q 038320 257 SIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVD 336 (467)
Q Consensus 257 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 336 (467)
..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.+ + .+|..++.+++|++|+|++|.++ .+|..+.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l-~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSL-T-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG 290 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCC-S-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcC-c-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc
Confidence 34555666677777777777766 5555556677777777777776 3 66666777777777777777776 4565565
Q ss_pred hhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCC-CCEEECcCCcCcccChhhhcCC
Q 038320 337 RLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSS-LRELYLHNNLMDGTIPKSLGKL 415 (467)
Q Consensus 337 ~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~-L~~L~Ls~n~l~~~~p~~l~~l 415 (467)
.+. +|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|..+..+.. +..++|++|.+++.+|..
T Consensus 291 ~l~-----~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~---- 360 (727)
T 4b8c_D 291 SCF-----QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE---- 360 (727)
T ss_dssp GGT-----TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----
T ss_pred CCC-----CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc----
Confidence 555 7777777777776 55666777778888888888777777766544321 123567777777766653
Q ss_pred CCCCEEeCcCC--------CCcccCChhhhCCCCCCCEEeccCCCC
Q 038320 416 SHLVVLDISGN--------PWIGLVTEVHFSKLKNLKELHIAKYSL 453 (467)
Q Consensus 416 ~~L~~L~l~~n--------~~~~~~~~~~~~~l~~L~~l~l~~n~i 453 (467)
|+.|+++.| .+.+..+. .+.++..+....+++|-+
T Consensus 361 --l~~l~l~~n~~~~~~~~~l~~~~~~-~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 361 --RRFIEINTDGEPQREYDSLQQSTEH-LATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp --------------------------------------------CC
T ss_pred --cceeEeecccccccccCCccccccc-hhhcccccceeeeecccc
Confidence 455556555 22222222 344555666667777744
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=3.1e-16 Score=131.21 Aligned_cols=130 Identities=24% Similarity=0.213 Sum_probs=76.2
Q ss_pred CCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCC
Q 038320 290 TSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLEN 369 (467)
Q Consensus 290 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~ 369 (467)
++++.|++++|.+..+.+|..+..+++|+.|++++|. +++. ..+..+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-----------------------------l~~~--~~~~~l~~ 65 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-----------------------------LTSI--ANLPKLNK 65 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-----------------------------CCCC--TTCCCCTT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-----------------------------CCCc--hhhhcCCC
Confidence 4566666666665214455544555555555555544 4433 44555666
Q ss_pred CCEEEccCCcCcccccccccCCCCCCEEECcCCcCccc-ChhhhcCCCCCCEEeCcCCCCcccCC--hhhhCCCCCCCEE
Q 038320 370 LKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGT-IPKSLGKLSHLVVLDISGNPWIGLVT--EVHFSKLKNLKEL 446 (467)
Q Consensus 370 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~l~~L~~l 446 (467)
|++|++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..+ ...+..+++|+.|
T Consensus 66 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 145 (149)
T 2je0_A 66 LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145 (149)
T ss_dssp CCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred CCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccc
Confidence 66666666666655566555566667777766666642 33566666777777777776665544 1246666777777
Q ss_pred eccC
Q 038320 447 HIAK 450 (467)
Q Consensus 447 ~l~~ 450 (467)
++++
T Consensus 146 ~l~d 149 (149)
T 2je0_A 146 DGYD 149 (149)
T ss_dssp TTBC
T ss_pred cCCC
Confidence 6653
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=1.4e-15 Score=129.91 Aligned_cols=132 Identities=27% Similarity=0.236 Sum_probs=65.5
Q ss_pred CCCCEEeccCCccc-cccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCC
Q 038320 266 SKLAHLDLSANNLQ-GNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANS 344 (467)
Q Consensus 266 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~ 344 (467)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+ .+. ..+..+++|++|++++|.+++.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l-~~~--~~~~~l~~L~~L~Ls~N~l~~~-------------- 86 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-ISV--SNLPKLPKLKKLELSENRIFGG-------------- 86 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC-CCC--SSCCCCSSCCEEEEESCCCCSC--------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC-CCh--hhhccCCCCCEEECcCCcCchH--------------
Confidence 44555555555554 34444445555555555555554 222 3444444555555555544443
Q ss_pred CccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCccc-ccccccCCCCCCEEECcCCcCcccCh---hhhcCCCCCCE
Q 038320 345 SLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGS-IPESIGNLSSLRELYLHNNLMDGTIP---KSLGKLSHLVV 420 (467)
Q Consensus 345 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~ 420 (467)
+|..+..+++|++|++++|.+++. .+..+..+++|+.|++++|.+++..+ ..+..+++|++
T Consensus 87 ---------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 151 (168)
T 2ell_A 87 ---------------LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY 151 (168)
T ss_dssp ---------------CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred ---------------HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence 334444444555555555544432 11345555555666666655553333 35555666666
Q ss_pred EeCcCCCCc
Q 038320 421 LDISGNPWI 429 (467)
Q Consensus 421 L~l~~n~~~ 429 (467)
|++++|.+.
T Consensus 152 L~l~~n~~~ 160 (168)
T 2ell_A 152 LDGYDREDQ 160 (168)
T ss_dssp ETTEETTSC
T ss_pred ecCCCCChh
Confidence 666666543
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=2.7e-15 Score=125.47 Aligned_cols=127 Identities=24% Similarity=0.263 Sum_probs=73.9
Q ss_pred CCCCEEeccCCccc-cccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCC
Q 038320 266 SKLAHLDLSANNLQ-GNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANS 344 (467)
Q Consensus 266 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~ 344 (467)
++++.|++++|.++ +.+|..+..+++|++|++++|.+ .+. ..+..+++|++|++++|.+++..|..+..++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~----- 88 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP----- 88 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC-CCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT-----
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC-CCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC-----
Confidence 56677777777776 56666667777777777777777 333 5566677777777777776665555544443
Q ss_pred CccEEECcCCCCCcC-CCccccCCCCCCEEEccCCcCccccc---ccccCCCCCCEEECc
Q 038320 345 SLESLDLGQNNLGGF-LPNSLGQLENLKILQLWGNLFRGSIP---ESIGNLSSLRELYLH 400 (467)
Q Consensus 345 ~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~~~~L~~L~Ls 400 (467)
+|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 89 ~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 566666666665542 22344445555555555555443322 234444444444443
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=1.5e-15 Score=144.79 Aligned_cols=219 Identities=13% Similarity=0.053 Sum_probs=128.6
Q ss_pred CCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCc----CCCCcchhccCC
Q 038320 190 LSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSND----FNSSIPQWLLNI 265 (467)
Q Consensus 190 l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~----l~~~~~~~l~~l 265 (467)
+++|+.+++.+ .++.... ..+..+++|++++++.|.+....+..|..+.++..+....+. ........+.++
T Consensus 100 ~~~L~~l~L~~-~i~~I~~---~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIED---AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp CTTCCC-CBCT-TCCEECT---TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred cCCCcEEECCc-cccchhH---HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 56666666655 4444332 255666667777776666666666666666666665554421 111112234444
Q ss_pred CCCC-EEeccCCccccccchhh----hCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhc
Q 038320 266 SKLA-HLDLSANNLQGNIPDAF----ANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSK 340 (467)
Q Consensus 266 ~~L~-~L~l~~n~l~~~~~~~l----~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~ 340 (467)
..|+ .+.+.... .++..+ ....+++.+.+.++-. ..........+++|+.+++++|.++......+..+.
T Consensus 176 ~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~- 250 (329)
T 3sb4_A 176 EPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLD-NADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKK- 250 (329)
T ss_dssp CCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCC-HHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCT-
T ss_pred cccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeec-HHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCC-
Confidence 5555 33332211 122111 1234455555544321 111111112356777777777766654444444444
Q ss_pred ccCCCccEEECcCCCCCcCCCccccCCCCCC-EEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCC
Q 038320 341 CANSSLESLDLGQNNLGGFLPNSLGQLENLK-ILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLV 419 (467)
Q Consensus 341 ~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 419 (467)
+|+.+++.+| ++...+.+|.++++|+ .+++.+ .++...+..|.+|++|+.+++++|.++...+..|.++++|+
T Consensus 251 ----~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 251 ----YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp ----TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred ----CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchh
Confidence 7777777776 6656667788888888 888888 66655567788889999999888888866777888888888
Q ss_pred EEeC
Q 038320 420 VLDI 423 (467)
Q Consensus 420 ~L~l 423 (467)
.++.
T Consensus 325 ~ly~ 328 (329)
T 3sb4_A 325 LIYK 328 (329)
T ss_dssp EEEC
T ss_pred hhcc
Confidence 8864
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=6.7e-15 Score=128.68 Aligned_cols=128 Identities=27% Similarity=0.325 Sum_probs=79.2
Q ss_pred CEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCE
Q 038320 293 RELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKI 372 (467)
Q Consensus 293 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~ 372 (467)
+.++++++.+ ..+|..+ .++|+.|++++|.++ .+|..+..+. +|++|++++|.+++..+..|..+++|++
T Consensus 13 ~~l~~~~~~l--~~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~-----~L~~L~Ls~N~i~~i~~~~f~~l~~L~~ 82 (193)
T 2wfh_A 13 TVVRCSNKGL--KVLPKGI--PRDVTELYLDGNQFT-LVPKELSNYK-----HLTLIDLSNNRISTLSNQSFSNMTQLLT 82 (193)
T ss_dssp TEEECTTSCC--SSCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCT-----TCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CEEEcCCCCC--CcCCCCC--CCCCCEEECCCCcCc-hhHHHhhccc-----CCCEEECCCCcCCEeCHhHccCCCCCCE
Confidence 4677777766 3455433 246677777777665 3334444443 6666666666666655566666666666
Q ss_pred EEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcc
Q 038320 373 LQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIG 430 (467)
Q Consensus 373 L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~ 430 (467)
|++++|.+++..+..|..+++|++|+|++|.++...+..+..+++|+.|++++|++..
T Consensus 83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred EECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 6666666665555566666666666666666664444456666666666666666653
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=2.8e-14 Score=124.74 Aligned_cols=128 Identities=25% Similarity=0.321 Sum_probs=100.0
Q ss_pred CEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccE
Q 038320 269 AHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLES 348 (467)
Q Consensus 269 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~ 348 (467)
+.++++++.++ .+|..+ .++|++|++++|.+ ..+|..+..+++|+.|++++|.+++..+..+..+. +|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i--~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~-----~L~~ 82 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT-----QLLT 82 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCC--CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT-----TCCE
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcC--chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCC-----CCCE
Confidence 56788888877 455443 35788888888888 36677888888888888888888877766666665 8888
Q ss_pred EECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcc
Q 038320 349 LDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDG 406 (467)
Q Consensus 349 L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~ 406 (467)
|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+..
T Consensus 83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred EECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 8888888887777788888888888888888886555567788888888888888754
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=2e-14 Score=123.85 Aligned_cols=86 Identities=26% Similarity=0.367 Sum_probs=34.6
Q ss_pred CccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCc
Q 038320 345 SLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDIS 424 (467)
Q Consensus 345 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~ 424 (467)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 33333333333333333333344444444444444443333333444444444444444443222233344444444444
Q ss_pred CCCCcc
Q 038320 425 GNPWIG 430 (467)
Q Consensus 425 ~n~~~~ 430 (467)
+|++.+
T Consensus 133 ~N~~~~ 138 (177)
T 2o6r_A 133 TNPWDC 138 (177)
T ss_dssp SSCBCC
T ss_pred CCCeec
Confidence 444443
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=1.7e-14 Score=124.33 Aligned_cols=130 Identities=21% Similarity=0.241 Sum_probs=107.7
Q ss_pred CCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCE
Q 038320 317 LWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRE 396 (467)
Q Consensus 317 L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~ 396 (467)
.+.++++++.++... ..+ +++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 9 ~~~l~~~~~~l~~~p-~~~-------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 80 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP-TGI-------PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTI 80 (177)
T ss_dssp TTEEECCSSCCSSCC-TTC-------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCEEEecCCCCccCC-CCC-------CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCE
Confidence 456667776665432 111 137899999999998777777899999999999999999766677899999999
Q ss_pred EECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCCCC
Q 038320 397 LYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSLAP 455 (467)
Q Consensus 397 L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i~~ 455 (467)
|++++|.+++..+..+..+++|++|++++|++++..+. .|..+++|+.|++++|++..
T Consensus 81 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 81 LYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDG-IFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSSCBCC
T ss_pred EECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHH-HhcCCcccCEEEecCCCeec
Confidence 99999999977777789999999999999999865554 78899999999999996653
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.54 E-value=5.3e-13 Score=129.99 Aligned_cols=87 Identities=9% Similarity=0.095 Sum_probs=51.0
Q ss_pred CccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCC
Q 038320 361 PNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKL 440 (467)
Q Consensus 361 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l 440 (467)
...|..+++|+.+++.+ .++......|.+|++|+.+.+..+ ++..-...|.++ +|+.+++.+|........ .|.++
T Consensus 293 ~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~-~F~~~ 368 (401)
T 4fdw_A 293 PYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK-VWYGF 368 (401)
T ss_dssp TTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCS-SCCCS
T ss_pred HHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccc-cccCC
Confidence 44566666666666663 344344455666677777776443 443445566666 677777777665543333 56666
Q ss_pred C-CCCEEeccCC
Q 038320 441 K-NLKELHIAKY 451 (467)
Q Consensus 441 ~-~L~~l~l~~n 451 (467)
+ .++.|.+..+
T Consensus 369 ~~~l~~l~vp~~ 380 (401)
T 4fdw_A 369 PDDITVIRVPAE 380 (401)
T ss_dssp CTTCCEEEECGG
T ss_pred CCCccEEEeCHH
Confidence 4 4666666555
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.53 E-value=7.7e-13 Score=128.86 Aligned_cols=269 Identities=12% Similarity=0.147 Sum_probs=138.5
Q ss_pred CCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCC
Q 038320 139 LEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLP 218 (467)
Q Consensus 139 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~ 218 (467)
+..++.+.+.++ ++..-...|.++ +|+.+.+.++ ++.++..+ |.++ +|+.+.+.. .+..... ..+..++
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~a---F~~~-~L~~i~lp~-~l~~I~~---~aF~~c~ 180 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMA---FFNS-TVQEIVFPS-TLEQLKE---DIFYYCY 180 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTT---TTTC-CCCEEECCT-TCCEECS---STTTTCT
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHh---cCCC-CceEEEeCC-CccEehH---HHhhCcc
Confidence 355566665543 332223345554 5667766554 55555443 3332 466666654 3333321 2455666
Q ss_pred CCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCC
Q 038320 219 SLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLS 298 (467)
Q Consensus 219 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 298 (467)
+|+.++++.|.+.......|. +.+|+.+.+..+ ++..-...|.++++|+.+.+..+ ++..-...|.+ .+|+.+.+.
T Consensus 181 ~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp 256 (401)
T 4fdw_A 181 NLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP 256 (401)
T ss_dssp TCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE
T ss_pred cCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC
Confidence 666666666666665555554 456666666533 43333445556666666666553 33233344444 556666663
Q ss_pred CCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCC
Q 038320 299 ENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGN 378 (467)
Q Consensus 299 ~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n 378 (467)
++ + ......+|.++++|+.+++.++.+.......+....+..+++|+.+.+.+ .++.....+|.++++|+.+.+..+
T Consensus 257 ~~-i-~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 257 NG-V-TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp TT-C-CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred CC-c-cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence 32 2 23334456666666666666655442111122222223333666666663 354444455666666666666443
Q ss_pred cCcccccccccCCCCCCEEECcCCcCcccChhhhcCCC-CCCEEeCcCCC
Q 038320 379 LFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLS-HLVVLDISGNP 427 (467)
Q Consensus 379 ~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~l~~n~ 427 (467)
++......|.++ +|+.+++++|.+....+..+..++ +++.|.+-.+.
T Consensus 334 -l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 334 -VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp -CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred -ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 433334456666 666666666655544444555553 45566555543
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=2e-14 Score=123.77 Aligned_cols=132 Identities=22% Similarity=0.213 Sum_probs=62.0
Q ss_pred hhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCcccc
Q 038320 286 FANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLG 365 (467)
Q Consensus 286 l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~ 365 (467)
+.++++|+.|++++|.+ . .++......++|++|++++|.+++. ..+..+ ++|++|++++|.+++..+..+.
T Consensus 15 ~~~~~~L~~L~l~~n~l-~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l-----~~L~~L~Ls~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKI-P-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLL-----RRLKTLLVNNNRICRIGEGLDQ 85 (176)
T ss_dssp EECTTSCEEEECTTSCC-C-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCC-----SSCCEEECCSSCCCEECSCHHH
T ss_pred cCCcCCceEEEeeCCCC-c-hhHHhhhcCCCCCEEECCCCCCCcc--cccccC-----CCCCEEECCCCcccccCcchhh
Confidence 34556666666666666 2 2332222223555555555555532 112221 2455555555555543333334
Q ss_pred CCCCCCEEEccCCcCcccccc--cccCCCCCCEEECcCCcCcccChh----hhcCCCCCCEEeCcCCCC
Q 038320 366 QLENLKILQLWGNLFRGSIPE--SIGNLSSLRELYLHNNLMDGTIPK----SLGKLSHLVVLDISGNPW 428 (467)
Q Consensus 366 ~l~~L~~L~l~~n~l~~~~~~--~l~~~~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~l~~n~~ 428 (467)
.+++|++|++++|.++ .+|. .+..+++|+.|++++|.++ .+|. .+..+++|+.|++++|..
T Consensus 86 ~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 86 ALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred cCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 4555555555555553 2333 3444555555555555554 2333 244455555555555543
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.50 E-value=9.5e-13 Score=128.52 Aligned_cols=156 Identities=13% Similarity=0.069 Sum_probs=78.9
Q ss_pred ccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChh
Q 038320 106 EISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVE 185 (467)
Q Consensus 106 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~ 185 (467)
.-..+|..+++|+.+.|..+ ++.. -..+|.++++|+.+++..+ +...-...|.++.+|+.+.+..+ +..+...+
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I-~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a-- 135 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREI-GEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA-- 135 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEE-CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT--
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCc-chhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee--
Confidence 33456788889999998643 5533 3467888999999998765 44233456778888888776543 22222222
Q ss_pred hcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCC
Q 038320 186 WLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNI 265 (467)
Q Consensus 186 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 265 (467)
+.++..++..........+ ...+..+++|+.+.+..+ +.......|.++.+|+.+.+..+ ++......+.++
T Consensus 136 -F~~~~~~~~~~~~~~~~i~-----~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~ 207 (394)
T 4fs7_A 136 -FKGCDFKEITIPEGVTVIG-----DEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAEC 207 (394)
T ss_dssp -TTTCCCSEEECCTTCCEEC-----TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTC
T ss_pred -eecccccccccCccccccc-----hhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccc
Confidence 2333222222221111111 113445555555555432 22233344555555555555443 221222334444
Q ss_pred CCCCEEeccC
Q 038320 266 SKLAHLDLSA 275 (467)
Q Consensus 266 ~~L~~L~l~~ 275 (467)
..|+.+.+..
T Consensus 208 ~~L~~i~~~~ 217 (394)
T 4fs7_A 208 ILLENMEFPN 217 (394)
T ss_dssp TTCCBCCCCT
T ss_pred cccceeecCC
Confidence 4455444433
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=4.1e-14 Score=121.82 Aligned_cols=130 Identities=22% Similarity=0.221 Sum_probs=57.7
Q ss_pred CCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccC
Q 038320 264 NISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCAN 343 (467)
Q Consensus 264 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~ 343 (467)
++++|+.|++++|.++. ++......++|++|++++|.+ .+ + ..+..+++|++|++++|.+++..+..+..++
T Consensus 17 ~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l-~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---- 88 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEI-RK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP---- 88 (176)
T ss_dssp CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCC-CE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT----
T ss_pred CcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCC-Cc-c-cccccCCCCCEEECCCCcccccCcchhhcCC----
Confidence 34445555555555442 222212222555555555554 22 1 3444445555555555555433333333333
Q ss_pred CCccEEECcCCCCCcCCCc--cccCCCCCCEEEccCCcCccccccc----ccCCCCCCEEECcCCcC
Q 038320 344 SSLESLDLGQNNLGGFLPN--SLGQLENLKILQLWGNLFRGSIPES----IGNLSSLRELYLHNNLM 404 (467)
Q Consensus 344 ~~L~~L~L~~n~i~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~----l~~~~~L~~L~Ls~n~l 404 (467)
+|++|++++|.++. +|. .+..+++|++|++++|.++ .+|.. +..+++|+.|++++|..
T Consensus 89 -~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 89 -DLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp -TCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred -CCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 45555555555532 222 4444555555555555554 22332 44455555555555444
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=3.4e-16 Score=137.68 Aligned_cols=127 Identities=24% Similarity=0.338 Sum_probs=65.7
Q ss_pred hhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccc
Q 038320 285 AFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSL 364 (467)
Q Consensus 285 ~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l 364 (467)
.+..+++|++|++++|.+ .+ +| .+..+++|++|++++|.++ .+|..+..++ +|++|++++|++++. | .+
T Consensus 43 ~~~~l~~L~~L~ls~n~l-~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~-----~L~~L~L~~N~l~~l-~-~~ 111 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNI-EK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD-----TLEELWISYNQIASL-S-GI 111 (198)
T ss_dssp HHHHTTTCSEEECSEEEE-SC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH-----HCSEEEEEEEECCCH-H-HH
T ss_pred HHhcCCCCCEEECCCCCC-cc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC-----cCCEEECcCCcCCcC-C-cc
Confidence 455555555555555555 22 33 4555555555555555555 2333333333 555566665555542 2 34
Q ss_pred cCCCCCCEEEccCCcCccccc-ccccCCCCCCEEECcCCcCcccChh----------hhcCCCCCCEEe
Q 038320 365 GQLENLKILQLWGNLFRGSIP-ESIGNLSSLRELYLHNNLMDGTIPK----------SLGKLSHLVVLD 422 (467)
Q Consensus 365 ~~l~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~Ls~n~l~~~~p~----------~l~~l~~L~~L~ 422 (467)
..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|. .+..+++|+.||
T Consensus 112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 555555556665555553211 2455566666666666665544333 245556666555
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.47 E-value=3.8e-15 Score=143.81 Aligned_cols=186 Identities=18% Similarity=0.153 Sum_probs=110.4
Q ss_pred CCCCEEeccCCccccccchhhh-----CCCCCCEEeCCCCCCCCCCCccc-ccCCCCCCEEeccCCcCCCchhhHHHhhh
Q 038320 266 SKLAHLDLSANNLQGNIPDAFA-----NMTSLRELDLSENSLIGGQIPKD-LGSLCNLWDLDLSGNDLDGEIIEFVDRLS 339 (467)
Q Consensus 266 ~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~~~ 339 (467)
+.|+.|++++|.++......+. ..++|+.|+|++|.+ ++..... ...+++|+.|++++|.+++.....+....
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL-DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCC-CHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCC-CHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4566666666666543333222 225677777777766 3222222 22345677777777777766666655443
Q ss_pred cccCCCccEEECcCCCCCcC----CCccccCCCCCCEEEccCCcCccc----ccccccCCCCCCEEECcCCcCccc----
Q 038320 340 KCANSSLESLDLGQNNLGGF----LPNSLGQLENLKILQLWGNLFRGS----IPESIGNLSSLRELYLHNNLMDGT---- 407 (467)
Q Consensus 340 ~~~~~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l~~~---- 407 (467)
....++|++|+|++|.+++. ++..+..+++|++|+|++|.+++. ++..+..+++|++|+|++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 22334788888888877642 334446677788888888887653 244556677888888888888753
Q ss_pred ChhhhcCCCCCCEEeCcCCCCcccCChhhhCCC---CC--CCEEe--ccCCCC
Q 038320 408 IPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKL---KN--LKELH--IAKYSL 453 (467)
Q Consensus 408 ~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l---~~--L~~l~--l~~n~i 453 (467)
++..+..+++|++|+|++|+++..... .+..+ .. |+.+. +..|.+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~-~L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQ-VLRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHH-HHHHCC------CEEECCCC----C
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHH-HHHHHhcCCCccchhhHhhhcCCcc
Confidence 444555678888888888887654333 23222 21 66666 555544
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=7.8e-16 Score=135.38 Aligned_cols=134 Identities=26% Similarity=0.314 Sum_probs=105.2
Q ss_pred hhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhh
Q 038320 260 QWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLS 339 (467)
Q Consensus 260 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~ 339 (467)
..+..+++|+.|++++|.+++ +| .+..+++|++|++++|.+ . .+|..+..+++|+.|++++|.+++. + .+..++
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l-~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~ 115 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLI-K-KIENLDAVADTLEELWISYNQIASL-S-GIEKLV 115 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEE-C-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHH
T ss_pred HHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCc-c-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCC
Confidence 377788888888888888875 55 778888888888888887 3 5676677778899999999988873 3 456665
Q ss_pred cccCCCccEEECcCCCCCcCCC-ccccCCCCCCEEEccCCcCccccccc----------ccCCCCCCEEECcCCcCcc
Q 038320 340 KCANSSLESLDLGQNNLGGFLP-NSLGQLENLKILQLWGNLFRGSIPES----------IGNLSSLRELYLHNNLMDG 406 (467)
Q Consensus 340 ~~~~~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~----------l~~~~~L~~L~Ls~n~l~~ 406 (467)
+|++|++++|++++..+ ..+..+++|++|++++|.+.+.+|.. +..+++|+.|+ ++.++.
T Consensus 116 -----~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 116 -----NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp -----HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred -----CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 89999999999885432 46888999999999999998766542 67899999987 666653
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=6.1e-13 Score=113.65 Aligned_cols=108 Identities=21% Similarity=0.260 Sum_probs=66.9
Q ss_pred CCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCE
Q 038320 317 LWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRE 396 (467)
Q Consensus 317 L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~ 396 (467)
.+.+++++|.++. +|..+. ++|++|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~~-------~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGIP-------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp TTEEECTTSCCSS-CCSCCC-------TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCEEEeCCCCcCc-cCccCC-------CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence 4566666666654 222211 25666777777666666666666666777777766666554555566666666
Q ss_pred EECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccC
Q 038320 397 LYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLV 432 (467)
Q Consensus 397 L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~ 432 (467)
|+|++|++++..+..+..+++|++|++++|++....
T Consensus 83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred EECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 676666666555555666666666666666665443
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.44 E-value=1e-11 Score=121.18 Aligned_cols=312 Identities=11% Similarity=0.029 Sum_probs=209.2
Q ss_pred cccccCccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCC
Q 038320 103 LEGEISPSVLDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESD 182 (467)
Q Consensus 103 l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~ 182 (467)
++..-..+|.+|++|+.+++..+ ++.. -...|.++++|+.+.+..+ +...-...|.++..++...... ...+...
T Consensus 82 i~~I~~~aF~~c~~L~~i~lp~~-l~~I-~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~--~~~i~~~ 156 (394)
T 4fs7_A 82 VREIGEFAFENCSKLEIINIPDS-VKMI-GRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEG--VTVIGDE 156 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CCEE-CTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTT--CCEECTT
T ss_pred ccCcchhHhhCCCCCcEEEeCCC-ceEc-cchhhcccccchhhcccCc-eeeecceeeecccccccccCcc--ccccchh
Confidence 44334457899999999999765 4422 3457888999998877654 3323334566665443332222 2223332
Q ss_pred ChhhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhc
Q 038320 183 DVEWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWL 262 (467)
Q Consensus 183 ~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 262 (467)
+ +.++++|+.+.+.++.. ... ...+..+++|+.+.+..+ +.......+.++..|+.+.+..+.. .+....
T Consensus 157 a---F~~c~~L~~i~l~~~~~-~I~---~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~--~i~~~~ 226 (394)
T 4fs7_A 157 A---FATCESLEYVSLPDSME-TLH---NGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY--YLGDFA 226 (394)
T ss_dssp T---TTTCTTCCEEECCTTCC-EEC---TTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC--EECTTT
T ss_pred h---hcccCCCcEEecCCccc-eec---cccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce--Eeehhh
Confidence 2 78899999999976532 222 236778899999998765 5556667788889999888766543 233444
Q ss_pred cCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhccc
Q 038320 263 LNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCA 342 (467)
Q Consensus 263 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~ 342 (467)
....+|+.+.+.... +......+..+..++.+.+..+.. ......+..+..++.+......+.. .. +..
T Consensus 227 ~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~~---~~-----F~~ 295 (394)
T 4fs7_A 227 LSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVPE---KT-----FYG 295 (394)
T ss_dssp TTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEECT---TT-----TTT
T ss_pred cccCCCceEEECCCc-eecccccccccccceeEEcCCCcc--eeeccccccccccceeccCceeecc---cc-----ccc
Confidence 556788888886542 323445677889999999987653 3344567788888888877654332 11 222
Q ss_pred CCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEe
Q 038320 343 NSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLD 422 (467)
Q Consensus 343 ~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 422 (467)
..+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++.....+|.+|.+|+.+++..+ ++..-..+|.+|++|+.++
T Consensus 296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 372 (394)
T 4fs7_A 296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVE 372 (394)
T ss_dssp CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEE
T ss_pred cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEE
Confidence 347888888754 55455667888999999999754 55444567888999999999776 6545567888999999999
Q ss_pred CcCCCCcccCChhhhCCCCCCCEE
Q 038320 423 ISGNPWIGLVTEVHFSKLKNLKEL 446 (467)
Q Consensus 423 l~~n~~~~~~~~~~~~~l~~L~~l 446 (467)
+..+ ...+.. .|.++++|+.+
T Consensus 373 lp~~--~~~~~~-~F~~c~~L~~I 393 (394)
T 4fs7_A 373 LPKR--LEQYRY-DFEDTTKFKWI 393 (394)
T ss_dssp EEGG--GGGGGG-GBCTTCEEEEE
T ss_pred ECCC--CEEhhh-eecCCCCCcEE
Confidence 8765 233444 68888888765
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=1.3e-12 Score=112.05 Aligned_cols=106 Identities=19% Similarity=0.231 Sum_probs=63.8
Q ss_pred CEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEE
Q 038320 318 WDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLREL 397 (467)
Q Consensus 318 ~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L 397 (467)
+.+++++|.++. +|..+. ++|++|++++|++++..|..+..+++|++|++++|.+++..+..|..+++|++|
T Consensus 15 ~~l~~~~n~l~~-iP~~~~-------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAGIP-------TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp SEEECCSSCCSS-CCSCCC-------TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cEEEeCCCCCCc-cCCCcC-------CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE
Confidence 566666666643 222221 256666666666666666666666666666666666665444445666666666
Q ss_pred ECcCCcCcccChhhhcCCCCCCEEeCcCCCCccc
Q 038320 398 YLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGL 431 (467)
Q Consensus 398 ~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~ 431 (467)
+|++|++++..+..+..+++|+.|++++|++...
T Consensus 87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 6666666644444466666666666666666543
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.41 E-value=4.4e-14 Score=136.31 Aligned_cols=161 Identities=20% Similarity=0.182 Sum_probs=123.9
Q ss_pred CCCCCEEeCCCCCCCCCCCccc----cc-CCCCCCEEeccCCcCCCchhhHHHh-hhcccCCCccEEECcCCCCCcCCCc
Q 038320 289 MTSLRELDLSENSLIGGQIPKD----LG-SLCNLWDLDLSGNDLDGEIIEFVDR-LSKCANSSLESLDLGQNNLGGFLPN 362 (467)
Q Consensus 289 l~~L~~L~L~~n~l~~~~~~~~----l~-~l~~L~~L~l~~n~l~~~~~~~l~~-~~~~~~~~L~~L~L~~n~i~~~~~~ 362 (467)
.++|+.|++++|.+ +...... +. ..++|+.|++++|.+++.....+.. +. +|+.|+|++|.+++....
T Consensus 71 ~~~L~~L~Ls~n~l-~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~-----~L~~L~Ls~n~l~~~~~~ 144 (372)
T 3un9_A 71 LSSLRQLNLAGVRM-TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL-----RARKLGLQLNSLGPEACK 144 (372)
T ss_dssp HTTCCEEECTTSCC-CHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH-----TEEEEECCSSCCCHHHHH
T ss_pred HhhCCEEEecCCCC-CHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH-----hccHhhcCCCCCCHHHHH
Confidence 46899999999998 4432222 33 2379999999999998766655544 33 899999999999865333
Q ss_pred cc-----cCCCCCCEEEccCCcCccc----ccccccCCCCCCEEECcCCcCccc----ChhhhcCCCCCCEEeCcCCCCc
Q 038320 363 SL-----GQLENLKILQLWGNLFRGS----IPESIGNLSSLRELYLHNNLMDGT----IPKSLGKLSHLVVLDISGNPWI 429 (467)
Q Consensus 363 ~l-----~~l~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~l~~n~~~ 429 (467)
.+ ...++|++|++++|.+++. ++..+..+++|++|+|++|.+++. ++..+...++|++|+|++|.++
T Consensus 145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 33 3568999999999999753 444557889999999999999764 4667788899999999999987
Q ss_pred ccCCh---hhhCCCCCCCEEeccCCCCCC
Q 038320 430 GLVTE---VHFSKLKNLKELHIAKYSLAP 455 (467)
Q Consensus 430 ~~~~~---~~~~~l~~L~~l~l~~n~i~~ 455 (467)
..... ..+...++|+.|+|++|+|++
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 54322 145567899999999998863
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=1.7e-12 Score=110.88 Aligned_cols=107 Identities=28% Similarity=0.314 Sum_probs=70.2
Q ss_pred CCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCC
Q 038320 292 LRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLK 371 (467)
Q Consensus 292 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~ 371 (467)
.+.+++++|.+ ..+|..+ .++|++|++++|.+++..+..+..+. +|++|++++|++++..+..+..+++|+
T Consensus 11 ~~~l~~s~n~l--~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~-----~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 81 (170)
T 3g39_A 11 GTTVDCSGKSL--ASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLT-----QLTRLDLDNNQLTVLPAGVFDKLTQLT 81 (170)
T ss_dssp TTEEECTTSCC--SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCT-----TCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCEEEeCCCCc--CccCccC--CCCCcEEEcCCCcCCccChhhhcCcc-----cCCEEECCCCCcCccChhhccCCCCCC
Confidence 45677777766 3355443 25677777777777766666555554 677777777777766555666777777
Q ss_pred EEEccCCcCcccccccccCCCCCCEEECcCCcCccc
Q 038320 372 ILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGT 407 (467)
Q Consensus 372 ~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 407 (467)
+|++++|.+++..+..+..+++|++|+|++|.+...
T Consensus 82 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 82 QLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred EEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 777777777755555566777777777777766543
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=6.6e-12 Score=107.53 Aligned_cols=105 Identities=24% Similarity=0.287 Sum_probs=68.4
Q ss_pred CEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCE
Q 038320 293 RELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKI 372 (467)
Q Consensus 293 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~ 372 (467)
+.+++++|.+ +.+|..+. ++|+.|++++|.+++..+..+..+. +|++|+|++|++++..+..+..+++|++
T Consensus 15 ~~l~~~~n~l--~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 15 TLVNCQNIRL--ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLV-----NLQQLYFNSNKLTAIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SEEECCSSCC--SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cEEEeCCCCC--CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCc-----CCCEEECCCCCCCccChhHhCCcchhhE
Confidence 5667777766 44555443 5677777777777766666555554 6777777777777655555666777777
Q ss_pred EEccCCcCcccccccccCCCCCCEEECcCCcCcc
Q 038320 373 LQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDG 406 (467)
Q Consensus 373 L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~ 406 (467)
|++++|.+++..+..+..+++|++|+|++|.+..
T Consensus 86 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 86 LDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred EECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 7777777765444446667777777777776653
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=3.8e-11 Score=114.96 Aligned_cols=98 Identities=23% Similarity=0.211 Sum_probs=83.5
Q ss_pred ccccccCccccCCCCCCEEeCCC-CCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCC
Q 038320 102 QLEGEISPSVLDLKHLNYLDLSL-NNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLE 180 (467)
Q Consensus 102 ~l~~~~~~~l~~l~~L~~L~L~~-n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~ 180 (467)
.+++ +|. +..+++|++|+|++ |.+++. .+..|.++++|++|+|++|++++..|..|.++++|++|+|++|.++.++
T Consensus 20 ~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 96 (347)
T 2ifg_A 20 ALDS-LHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS 96 (347)
T ss_dssp CCTT-TTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred CCCc-cCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC
Confidence 4554 677 99999999999996 999865 5578999999999999999999888888999999999999999999988
Q ss_pred CCChhhcCCCCCCCEEECCCcCCCCC
Q 038320 181 SDDVEWLSRLSSLQYLNLEGVDLSKA 206 (467)
Q Consensus 181 ~~~~~~l~~l~~L~~L~L~~n~~~~~ 206 (467)
... +..++ |+.|++.+|.+...
T Consensus 97 ~~~---~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 97 WKT---VQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp STT---TCSCC-CCEEECCSSCCCCC
T ss_pred HHH---cccCC-ceEEEeeCCCccCC
Confidence 764 33333 99999999988754
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=5.1e-11 Score=114.11 Aligned_cols=102 Identities=23% Similarity=0.215 Sum_probs=47.3
Q ss_pred EECcCC-CCCcCCCccccCCCCCCEEEccC-CcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCC
Q 038320 349 LDLGQN-NLGGFLPNSLGQLENLKILQLWG-NLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGN 426 (467)
Q Consensus 349 L~L~~n-~i~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n 426 (467)
++++++ .+++ +|. +..+++|++|+|++ |.+++..+..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 344444 4442 333 44444555555543 4444444444445555555555555555444444455555555555555
Q ss_pred CCcccCChhhhCCCCCCCEEeccCCCCC
Q 038320 427 PWIGLVTEVHFSKLKNLKELHIAKYSLA 454 (467)
Q Consensus 427 ~~~~~~~~~~~~~l~~L~~l~l~~n~i~ 454 (467)
++++..+. .|..++ |+.|+|.+|++.
T Consensus 91 ~l~~~~~~-~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWK-TVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCST-TTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHH-HcccCC-ceEEEeeCCCcc
Confidence 54433332 333333 555555555443
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.20 E-value=2.4e-09 Score=104.36 Aligned_cols=317 Identities=9% Similarity=0.069 Sum_probs=177.7
Q ss_pred ccccCCC-CCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCc---CCCCCCccCCCCCcCCeeeccCccCCCCCCCCh
Q 038320 109 PSVLDLK-HLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGAS---FAGNIPPSFGNLSSLQILDLNTFYYSSLESDDV 184 (467)
Q Consensus 109 ~~l~~l~-~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~ 184 (467)
.+|.+++ .|+.+.+..+ ++.. -..+|.++++|+.+.+..+. ++..-...|.++.+|+.+.+..+ ++.++...
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~I-g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a- 132 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEI-GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA- 132 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEE-CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT-
T ss_pred hhccCCCCcCEEEEECCC-eeEE-hHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh-
Confidence 4566664 5888888653 4433 45678888889988887653 33223355778888888777653 34444433
Q ss_pred hhcCCCCCCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccC
Q 038320 185 EWLSRLSSLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLN 264 (467)
Q Consensus 185 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 264 (467)
+..+.+|+.+.+..+. .... ...+..+..|+.+.+..+ +.......|.. ..|+.+.+..+-. ......+.+
T Consensus 133 --F~~c~~L~~i~lp~~~-~~I~---~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~ 203 (394)
T 4gt6_A 133 --FHHCEELDTVTIPEGV-TSVA---DGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSE 203 (394)
T ss_dssp --TTTCTTCCEEECCTTC-CEEC---TTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTT
T ss_pred --hhhhccccccccccee-eeec---ccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhh
Confidence 6777888888886432 2222 125666777888777654 33333334433 4677777654322 122344556
Q ss_pred CCCCCEEeccCCccccccch-------------hhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCch
Q 038320 265 ISKLAHLDLSANNLQGNIPD-------------AFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEI 331 (467)
Q Consensus 265 l~~L~~L~l~~n~l~~~~~~-------------~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 331 (467)
+.+++............... .......+..+.+... + ......+|..+..|+.+.+..+... ..
T Consensus 204 c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v-~~i~~~aF~~c~~L~~i~lp~~~~~-I~ 280 (394)
T 4gt6_A 204 CFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-V-ARIETHAFDSCAYLASVKMPDSVVS-IG 280 (394)
T ss_dssp CTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-E-EEECTTTTTTCSSCCEEECCTTCCE-EC
T ss_pred ccccceecccccccccccceeecccccccccccccccccccceEEcCCc-c-eEcccceeeecccccEEecccccce-ec
Confidence 66666665544332210000 0111223333433221 1 1122345677778888877654321 11
Q ss_pred hhHHHhhhcccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhh
Q 038320 332 IEFVDRLSKCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKS 411 (467)
Q Consensus 332 ~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~ 411 (467)
... +.....|+.+.+. +.++......|.++.+|+.+.+..+ ++.....+|.+|.+|+.+.+..+ ++..-..+
T Consensus 281 ~~a-----F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~a 352 (394)
T 4gt6_A 281 TGA-----FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESA 352 (394)
T ss_dssp TTT-----TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGG
T ss_pred Ccc-----cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhH
Confidence 122 2223378888875 3455455567888888888888764 44344566888888888888654 55445577
Q ss_pred hcCCCCCCEEeCcCCCCcccCChhhhCCCCCCCEEeccCCCC
Q 038320 412 LGKLSHLVVLDISGNPWIGLVTEVHFSKLKNLKELHIAKYSL 453 (467)
Q Consensus 412 l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~n~i 453 (467)
|.+|++|+.+++.++.... . .+..+.+|+.+.+..+.+
T Consensus 353 F~~C~~L~~i~~~~~~~~~---~-~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 353 FSNCTALNNIEYSGSRSQW---N-AISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp GTTCTTCCEEEESSCHHHH---H-TCBCCCCC----------
T ss_pred hhCCCCCCEEEECCceeeh---h-hhhccCCCCEEEeCCCCE
Confidence 8888888888888875321 2 566778888888877643
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.17 E-value=8.7e-09 Score=100.30 Aligned_cols=295 Identities=12% Similarity=0.119 Sum_probs=194.0
Q ss_pred CcccCCCC-CCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCcc---CCCCCCCChhhcCCCCCCCEEECCCcCCCCCCC
Q 038320 133 PNFLGSLE-KLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFY---YSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGS 208 (467)
Q Consensus 133 ~~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~---~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~ 208 (467)
..+|.+++ .|+.+.+..+ ++..-...|.+|++|+.+.+..+. ++.+...+ |..+.+|+.+.+..+ ++...
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~a---F~~c~~L~~i~~~~~-~~~I~- 129 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQA---FMFCSELTDIPILDS-VTEID- 129 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTT---TTTCTTCCBCGGGTT-CSEEC-
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhh---chhcccceeeccCCc-cceeh-
Confidence 34677774 5999999764 543445678999999999998764 44444443 778888888777553 22222
Q ss_pred chhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCccccccchhhhC
Q 038320 209 SWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQGNIPDAFAN 288 (467)
Q Consensus 209 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 288 (467)
...+..+.+|+.+.+.. .+.......+..+.+|+.+.+..+ ++ .+........+|+.+.+..+.. ......+.+
T Consensus 130 --~~aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~~~~l~~i~ip~~~~-~i~~~af~~ 203 (394)
T 4gt6_A 130 --SEAFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFTGTALTQIHIPAKVT-RIGTNAFSE 203 (394)
T ss_dssp --TTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCCCSEEEECTTCC-EECTTTTTT
T ss_pred --hhhhhhhcccccccccc-eeeeecccceecccccccccccce-ee-EeccccccccceeEEEECCccc-ccccchhhh
Confidence 23667789999999974 345555667888899999988765 32 2333222346788888865433 244556778
Q ss_pred CCCCCEEeCCCCCCCCCCCccc--------------ccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCC
Q 038320 289 MTSLRELDLSENSLIGGQIPKD--------------LGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQN 354 (467)
Q Consensus 289 l~~L~~L~L~~n~l~~~~~~~~--------------l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 354 (467)
+..++.......... ..... +.....+..+.+... + ..++...+.....|+.+.+..+
T Consensus 204 c~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v-----~~i~~~aF~~c~~L~~i~lp~~ 275 (394)
T 4gt6_A 204 CFALSTITSDSESYP--AIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-V-----ARIETHAFDSCAYLASVKMPDS 275 (394)
T ss_dssp CTTCCEEEECCSSSC--BSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-E-----EEECTTTTTTCSSCCEEECCTT
T ss_pred ccccceecccccccc--cccceeecccccccccccccccccccceEEcCCc-c-----eEcccceeeecccccEEecccc
Confidence 888888877655431 11111 111223333333221 1 1111222233348899998765
Q ss_pred CCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCCh
Q 038320 355 NLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTE 434 (467)
Q Consensus 355 ~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~ 434 (467)
..+ .....|.++++|+.+.+.. .++......|.+|.+|+.+++..+ ++.....+|.+|.+|+.+.+-.+ ...+..
T Consensus 276 ~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~ 350 (394)
T 4gt6_A 276 VVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS--VTKIPE 350 (394)
T ss_dssp CCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT--CCBCCG
T ss_pred cce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc--cCEEhH
Confidence 433 4456788999999999974 455455567889999999999865 55445678999999999999655 345666
Q ss_pred hhhCCCCCCCEEeccCCC
Q 038320 435 VHFSKLKNLKELHIAKYS 452 (467)
Q Consensus 435 ~~~~~l~~L~~l~l~~n~ 452 (467)
..|.+|++|+.+++.++.
T Consensus 351 ~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 351 SAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp GGGTTCTTCCEEEESSCH
T ss_pred hHhhCCCCCCEEEECCce
Confidence 699999999999999873
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.09 E-value=4.6e-11 Score=114.27 Aligned_cols=84 Identities=15% Similarity=0.194 Sum_probs=42.2
Q ss_pred CCCCCCEEEccCCcCccccccccc---CCCCCCEEECcCCcCcccC----hhhhcCCCCCCEEeCcCCCCcccCChhhhC
Q 038320 366 QLENLKILQLWGNLFRGSIPESIG---NLSSLRELYLHNNLMDGTI----PKSLGKLSHLVVLDISGNPWIGLVTEVHFS 438 (467)
Q Consensus 366 ~l~~L~~L~l~~n~l~~~~~~~l~---~~~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 438 (467)
.+++|++|++.+|.+.+..+..+. .+++|++|+|+.|.+.+.. +..+..+++|+.|++++|.++..... .+.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~-~l~ 328 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK-ELQ 328 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH-HHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH-HHH
Confidence 355666666666665543322222 3556666666666665432 22333456666666666665543322 222
Q ss_pred C-CCCCCEEeccCCC
Q 038320 439 K-LKNLKELHIAKYS 452 (467)
Q Consensus 439 ~-l~~L~~l~l~~n~ 452 (467)
. + ...+++++++
T Consensus 329 ~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 329 KSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHC--CSEEECCSBC
T ss_pred HHc--CCEEEecCCc
Confidence 1 1 2445666554
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.05 E-value=2.5e-10 Score=109.17 Aligned_cols=205 Identities=18% Similarity=0.200 Sum_probs=128.1
Q ss_pred CCCCCEEECCCCcCcc-cC-------CccccCCCCCcEEEccCCcCC---------CCcchhccCCCCCCEEeccCCccc
Q 038320 217 LPSLSELHLPACGLFE-FP-------PLSVVNFSSLLFLDLSSNDFN---------SSIPQWLLNISKLAHLDLSANNLQ 279 (467)
Q Consensus 217 l~~L~~L~l~~n~~~~-~~-------~~~l~~l~~L~~L~l~~n~l~---------~~~~~~l~~l~~L~~L~l~~n~l~ 279 (467)
...++.|.+......+ .. .....++++|+.|.+...... +.+...+..+++|+.|++++|.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 4567788887655442 11 223456789999988664321 234455667888999999887311
Q ss_pred cccchhhhCCCCCCEEeCCCCCCCCCCCccccc--CCCCCCEEeccC--CcCCCc-hhhHHHhhhc-ccCCCccEEECcC
Q 038320 280 GNIPDAFANMTSLRELDLSENSLIGGQIPKDLG--SLCNLWDLDLSG--NDLDGE-IIEFVDRLSK-CANSSLESLDLGQ 353 (467)
Q Consensus 280 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~--~l~~L~~L~l~~--n~l~~~-~~~~l~~~~~-~~~~~L~~L~L~~ 353 (467)
.++. + .+++|++|++..+.+ .......+. .+|+|+.|+|+. +...+. ....+..... ..+++|+.|++.+
T Consensus 186 -~l~~-~-~~~~L~~L~L~~~~l-~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~ 261 (362)
T 2ra8_A 186 -SIGK-K-PRPNLKSLEIISGGL-PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVD 261 (362)
T ss_dssp -BCCS-C-BCTTCSEEEEECSBC-CHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEES
T ss_pred -eecc-c-cCCCCcEEEEecCCC-ChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCC
Confidence 2232 3 378899999888776 333333333 678899888853 222221 1222222211 2346899999988
Q ss_pred CCCCcCCCccc---cCCCCCCEEEccCCcCcccc----cccccCCCCCCEEECcCCcCcccChhhhcC-CCCCCEEeCcC
Q 038320 354 NNLGGFLPNSL---GQLENLKILQLWGNLFRGSI----PESIGNLSSLRELYLHNNLMDGTIPKSLGK-LSHLVVLDISG 425 (467)
Q Consensus 354 n~i~~~~~~~l---~~l~~L~~L~l~~n~l~~~~----~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~l~~ 425 (467)
|.+.+..+..+ ..+++|++|+|+.|.+.+.. +..+..+++|+.|++++|.+++.....+.. + ...++++.
T Consensus 262 ~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~ 339 (362)
T 2ra8_A 262 AEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSD 339 (362)
T ss_dssp CTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCS
T ss_pred CCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecC
Confidence 88875432222 35788999999988887643 333445788999999988888765555554 3 46688888
Q ss_pred CC
Q 038320 426 NP 427 (467)
Q Consensus 426 n~ 427 (467)
++
T Consensus 340 ~~ 341 (362)
T 2ra8_A 340 SQ 341 (362)
T ss_dssp BC
T ss_pred Cc
Confidence 76
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.93 E-value=1.8e-07 Score=90.40 Aligned_cols=304 Identities=10% Similarity=0.051 Sum_probs=163.0
Q ss_pred cCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCC
Q 038320 112 LDLKHLNYLDLSLNNFRGSRIPNFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLS 191 (467)
Q Consensus 112 ~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~ 191 (467)
....+|+.+.+... ++.. -..+|.++.+|+.+++..+ ++..-...|.++ +|+.+.+..+ +..+...+ +.. .
T Consensus 43 ~~~~~i~~v~ip~~-vt~I-g~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~a---F~~-~ 113 (379)
T 4h09_A 43 KDRDRISEVRVNSG-ITSI-GEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYV---FQG-T 113 (379)
T ss_dssp GGGGGCSEEEECTT-EEEE-CTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTT---TTT-C
T ss_pred ccccCCEEEEeCCC-ccCh-HHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccce---ecc-C
Confidence 34456666666532 3322 2346777777777777643 332233445555 5666665432 34444433 233 3
Q ss_pred CCCEEECCCcCCCCCCCchhhhcCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCC------------Ccc
Q 038320 192 SLQYLNLEGVDLSKAGSSWVQATNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNS------------SIP 259 (467)
Q Consensus 192 ~L~~L~L~~n~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~------------~~~ 259 (467)
+|+.+.+..+. ..... ..+.. .+++.+.+.. .+.......+..+.+++.+.+..+.... ...
T Consensus 114 ~L~~i~lp~~~-~~i~~---~~F~~-~~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (379)
T 4h09_A 114 DLDDFEFPGAT-TEIGN---YIFYN-SSVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTIL 187 (379)
T ss_dssp CCSEEECCTTC-CEECT---TTTTT-CCCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEE
T ss_pred CcccccCCCcc-ccccc---ccccc-ceeeeeeccc-eeeccccchhcccccccccccccccceeecccceeccccccee
Confidence 67777775432 11111 12222 2455554443 2333334455666666666665433211 111
Q ss_pred hhccCCCCCCEEeccCCccccccchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhh
Q 038320 260 QWLLNISKLAHLDLSANNLQGNIPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLS 339 (467)
Q Consensus 260 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~ 339 (467)
..+.....+..+.+..... ......+..+.+|+.+.+..+- .......+..+..|+.+.+..+ ++......+...
T Consensus 188 ~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~~--~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~- 262 (379)
T 4h09_A 188 ESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSGV--TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNC- 262 (379)
T ss_dssp EECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTTC--CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTC-
T ss_pred cccccccccccccccccee-EEeecccccccccceeeeccce--eEEccccccCCccceEEEcCCC-ccEeCcccccee-
Confidence 2233444555555433221 1333445667777777776542 2233345667777887777654 222222222222
Q ss_pred cccCCCccEEECcCCCCCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCC
Q 038320 340 KCANSSLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLV 419 (467)
Q Consensus 340 ~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 419 (467)
.+|+.+.+..+ +.......|..+++|+.+.+.++.++......|.+|.+|+.+.+..+ ++..-..+|.+|++|+
T Consensus 263 ----~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 263 ----TALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS 336 (379)
T ss_dssp ----TTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred ----ehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence 36777777543 44344456777888888888877776555566778888888888654 4434456777888888
Q ss_pred EEeCcCCCCcccCChhhhCCCCCC
Q 038320 420 VLDISGNPWIGLVTEVHFSKLKNL 443 (467)
Q Consensus 420 ~L~l~~n~~~~~~~~~~~~~l~~L 443 (467)
.+.+..+ + ..+....|.++..+
T Consensus 337 ~i~ip~~-v-~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 337 TISYPKS-I-TLIESGAFEGSSIT 358 (379)
T ss_dssp CCCCCTT-C-CEECTTTTTTSSCC
T ss_pred EEEECCc-c-CEEchhHhhCCCCC
Confidence 8887654 3 33444467666443
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.88 E-value=1.9e-07 Score=90.33 Aligned_cols=292 Identities=12% Similarity=0.126 Sum_probs=186.1
Q ss_pred cccCCCCCCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccCCCCCCCChhhcCCCCCCCEEECCCcCCCCCCCchhhh
Q 038320 134 NFLGSLEKLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYYSSLESDDVEWLSRLSSLQYLNLEGVDLSKAGSSWVQA 213 (467)
Q Consensus 134 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~ 213 (467)
.++....+|+.+.+... ++..-...|.+|.+|+.+++..+ ++.+...+ +.++ +|+.+.+..+ +...... .
T Consensus 40 ~~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~a---F~~c-~l~~i~~~~~-l~~I~~~---a 109 (379)
T 4h09_A 40 PWYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGA---FADT-KLQSYTGMER-VKKFGDY---V 109 (379)
T ss_dssp TTGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTT---TTTC-CCCEEEECTT-CCEECTT---T
T ss_pred cccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhh---hcCC-CCceEECCce-eeEeccc---e
Confidence 34556778999988753 44334456899999999999754 66666665 4555 5777776543 2222211 3
Q ss_pred cCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCCEEeccCCcccc------------c
Q 038320 214 TNMLPSLSELHLPACGLFEFPPLSVVNFSSLLFLDLSSNDFNSSIPQWLLNISKLAHLDLSANNLQG------------N 281 (467)
Q Consensus 214 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~------------~ 281 (467)
+.. .+|+.+.+..+ +.......+.++ +++.+.+..+ ++..-...+..+..++.+.+..+.... .
T Consensus 110 F~~-~~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (379)
T 4h09_A 110 FQG-TDLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKT 185 (379)
T ss_dssp TTT-CCCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSS
T ss_pred ecc-CCcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccc
Confidence 333 47888888754 333333344443 5666555443 222233456677778877765543221 1
Q ss_pred cchhhhCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCCcCCC
Q 038320 282 IPDAFANMTSLRELDLSENSLIGGQIPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGFLP 361 (467)
Q Consensus 282 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~~~ 361 (467)
....+..+..+..+.+..... ......+..+.+|+.+.+..+ +.......+.. ...|+.+.+..+ ++....
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~-----~~~L~~i~lp~~-v~~I~~ 256 (379)
T 4h09_A 186 ILESYPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYG-----MKALDEIAIPKN-VTSIGS 256 (379)
T ss_dssp EEEECCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTT-----CSSCCEEEECTT-CCEECT
T ss_pred eecccccccccccccccccee--EEeecccccccccceeeeccc-eeEEccccccC-----CccceEEEcCCC-ccEeCc
Confidence 112233455566666554322 233345667778888887654 22112222222 337999998765 554556
Q ss_pred ccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCCCCcccCChhhhCCCC
Q 038320 362 NSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGNPWIGLVTEVHFSKLK 441 (467)
Q Consensus 362 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 441 (467)
..+..+.+|+.+.+..+ +.......|.+|++|+.+.+.++.++..-...|.+|.+|+.+++..+ ...+....|.+|+
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~ 333 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCK 333 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCT
T ss_pred cccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCC
Confidence 68888999999999765 44344556889999999999998887666788999999999999765 3456555899999
Q ss_pred CCCEEeccCC
Q 038320 442 NLKELHIAKY 451 (467)
Q Consensus 442 ~L~~l~l~~n 451 (467)
+|+.+.+..+
T Consensus 334 ~L~~i~ip~~ 343 (379)
T 4h09_A 334 ALSTISYPKS 343 (379)
T ss_dssp TCCCCCCCTT
T ss_pred CCCEEEECCc
Confidence 9999988654
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.76 E-value=5.2e-09 Score=90.31 Aligned_cols=72 Identities=17% Similarity=0.220 Sum_probs=33.1
Q ss_pred hhhhCCCCCCEEeCCCC-CCCCCC----CcccccCCCCCCEEeccCCcCCCchhhHHHhhhcccCCCccEEECcCCCCC
Q 038320 284 DAFANMTSLRELDLSEN-SLIGGQ----IPKDLGSLCNLWDLDLSGNDLDGEIIEFVDRLSKCANSSLESLDLGQNNLG 357 (467)
Q Consensus 284 ~~l~~l~~L~~L~L~~n-~l~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~ 357 (467)
..+...+.|++|+|++| .+ +.. +...+...++|++|++++|.+.+.....+..... ..+.|++|+|++|.|+
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i-~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~-~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNI-PVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK-VNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTC-CHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH-HCSSCCEEECCSSCCC
T ss_pred HHHhcCCCCCEEEecCCCCC-CHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHH-hCCCcCEEECcCCcCC
Confidence 33445566666666665 55 221 2223444555556666655555444433333211 1113444444444444
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.65 E-value=1.7e-08 Score=86.98 Aligned_cols=119 Identities=18% Similarity=0.162 Sum_probs=65.7
Q ss_pred cccCCCCCCEEeccCC-cCCCchhhHHHhhhcccCCCccEEECcCCCCCcC----CCccccCCCCCCEEEccCCcCccc-
Q 038320 310 DLGSLCNLWDLDLSGN-DLDGEIIEFVDRLSKCANSSLESLDLGQNNLGGF----LPNSLGQLENLKILQLWGNLFRGS- 383 (467)
Q Consensus 310 ~l~~l~~L~~L~l~~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n~l~~~- 383 (467)
.+...+.|++|++++| .+.+.....+...-. ..++|++|+|++|.+.+. +...+...++|++|+|++|.+.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~-~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHH-hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 3455566666666666 666554444443321 123566666666666532 223334445666666666666542
Q ss_pred ---ccccccCCCCCCEEEC--cCCcCccc----ChhhhcCCCCCCEEeCcCCCCc
Q 038320 384 ---IPESIGNLSSLRELYL--HNNLMDGT----IPKSLGKLSHLVVLDISGNPWI 429 (467)
Q Consensus 384 ---~~~~l~~~~~L~~L~L--s~n~l~~~----~p~~l~~l~~L~~L~l~~n~~~ 429 (467)
+...+...++|++|+| ++|.+.+. +.+.+...++|++|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2344455566666666 56666543 3344455566777777666653
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.39 E-value=1.6e-07 Score=79.07 Aligned_cols=85 Identities=14% Similarity=0.140 Sum_probs=56.8
Q ss_pred CccEEECcCCCCCcCCCccccCCCCCCEEEccCCc-CcccccccccCC----CCCCEEECcCCc-CcccChhhhcCCCCC
Q 038320 345 SLESLDLGQNNLGGFLPNSLGQLENLKILQLWGNL-FRGSIPESIGNL----SSLRELYLHNNL-MDGTIPKSLGKLSHL 418 (467)
Q Consensus 345 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~~----~~L~~L~Ls~n~-l~~~~p~~l~~l~~L 418 (467)
+|+.|++++|.+++.--..+..+++|++|+|++|. +++.--..+..+ ++|++|+|++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 57777777777776555566677777777777774 555444445443 367777777763 766655666777777
Q ss_pred CEEeCcCCCCc
Q 038320 419 VVLDISGNPWI 429 (467)
Q Consensus 419 ~~L~l~~n~~~ 429 (467)
+.|++++|+-.
T Consensus 142 ~~L~L~~c~~I 152 (176)
T 3e4g_A 142 KYLFLSDLPGV 152 (176)
T ss_dssp CEEEEESCTTC
T ss_pred CEEECCCCCCC
Confidence 77777777533
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.38 E-value=3.5e-07 Score=82.94 Aligned_cols=80 Identities=19% Similarity=0.211 Sum_probs=36.0
Q ss_pred CCCCCEEEccCCcCcc--cccccccCCCCCCEEECcCCcCccc-ChhhhcCCCCCCEEeCcCCCCcccCCh------hhh
Q 038320 367 LENLKILQLWGNLFRG--SIPESIGNLSSLRELYLHNNLMDGT-IPKSLGKLSHLVVLDISGNPWIGLVTE------VHF 437 (467)
Q Consensus 367 l~~L~~L~l~~n~l~~--~~~~~l~~~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~l~~n~~~~~~~~------~~~ 437 (467)
+++|+.|+|++|.+++ .++..+..+++|+.|+|++|++.+. ....+..+ +|++|+|++|++.+.+|. ..+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHH
Confidence 3444444444444443 2233344455555555555555432 11112222 555555655555554431 124
Q ss_pred CCCCCCCEEe
Q 038320 438 SKLKNLKELH 447 (467)
Q Consensus 438 ~~l~~L~~l~ 447 (467)
..+|+|+.||
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 4555555554
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.38 E-value=1.5e-07 Score=79.15 Aligned_cols=82 Identities=11% Similarity=0.139 Sum_probs=44.9
Q ss_pred CCCEEEccCCcCcccccccccCCCCCCEEECcCCc-CcccChhhhcCC----CCCCEEeCcCCC-CcccCChhhhCCCCC
Q 038320 369 NLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNL-MDGTIPKSLGKL----SHLVVLDISGNP-WIGLVTEVHFSKLKN 442 (467)
Q Consensus 369 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~l~~n~-~~~~~~~~~~~~l~~ 442 (467)
.|+.||+++|.+++.--..+..+++|++|+|++|. +++..-..+..+ ++|++|++++|. ++..-.. .+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCCC
Confidence 46666666666555444455566666666666663 555444444443 356666666654 3332222 3455666
Q ss_pred CCEEeccCC
Q 038320 443 LKELHIAKY 451 (467)
Q Consensus 443 L~~l~l~~n 451 (467)
|+.|++++|
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 666666665
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.31 E-value=1.6e-07 Score=85.13 Aligned_cols=79 Identities=29% Similarity=0.373 Sum_probs=60.1
Q ss_pred CCCccEEECcCCCCCc--CCCccccCCCCCCEEEccCCcCcccccccccCCC--CCCEEECcCCcCcccCh-------hh
Q 038320 343 NSSLESLDLGQNNLGG--FLPNSLGQLENLKILQLWGNLFRGSIPESIGNLS--SLRELYLHNNLMDGTIP-------KS 411 (467)
Q Consensus 343 ~~~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~--~L~~L~Ls~n~l~~~~p-------~~ 411 (467)
+++|+.|+|++|++++ .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|+|++|.+.+.+| ..
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 4588899999998887 3456667888999999999998864 2233333 89999999999987554 34
Q ss_pred hcCCCCCCEEeC
Q 038320 412 LGKLSHLVVLDI 423 (467)
Q Consensus 412 l~~l~~L~~L~l 423 (467)
+..+|+|+.||=
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 678899998874
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.95 E-value=9.8e-06 Score=69.48 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=18.6
Q ss_pred ccCCCCCCEEECcCC---cCccc----ChhhhcCCCCCCEEeCcCCC
Q 038320 388 IGNLSSLRELYLHNN---LMDGT----IPKSLGKLSHLVVLDISGNP 427 (467)
Q Consensus 388 l~~~~~L~~L~Ls~n---~l~~~----~p~~l~~l~~L~~L~l~~n~ 427 (467)
+...+.|++|+|++| .+.+. +.+.+..-+.|+.|+++.|.
T Consensus 122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 334444555555543 22221 33444445555555555543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.80 E-value=1e-05 Score=69.42 Aligned_cols=108 Identities=15% Similarity=0.144 Sum_probs=72.0
Q ss_pred CccEEECcCC-CCCcC----CCccccCCCCCCEEEccCCcCccc----ccccccCCCCCCEEECcCCcCccc----Chhh
Q 038320 345 SLESLDLGQN-NLGGF----LPNSLGQLENLKILQLWGNLFRGS----IPESIGNLSSLRELYLHNNLMDGT----IPKS 411 (467)
Q Consensus 345 ~L~~L~L~~n-~i~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l~~~----~p~~ 411 (467)
.|++|+|++| +|.+. +...+..-+.|+.|+|++|.+.+. +.+.+...+.|++|+|++|.|.+. +.+.
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 4555555553 44421 233445556677777777777643 334455678899999999999765 4566
Q ss_pred hcCCCCCCEEeCcCC---CCccc----CChhhhCCCCCCCEEeccCCCC
Q 038320 412 LGKLSHLVVLDISGN---PWIGL----VTEVHFSKLKNLKELHIAKYSL 453 (467)
Q Consensus 412 l~~l~~L~~L~l~~n---~~~~~----~~~~~~~~l~~L~~l~l~~n~i 453 (467)
+..-+.|++|+|++| .+... +.. .+..-+.|+.|+++.|.+
T Consensus 122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFASM 169 (197)
T ss_dssp TTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCCH
T ss_pred HhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCCc
Confidence 777888999999876 33322 223 566678999999998854
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.44 E-value=0.0065 Score=48.30 Aligned_cols=57 Identities=26% Similarity=0.294 Sum_probs=39.0
Q ss_pred cEEECcCCCCC-cCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcCCcCc
Q 038320 347 ESLDLGQNNLG-GFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHNNLMD 405 (467)
Q Consensus 347 ~~L~L~~n~i~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~ 405 (467)
..++.+++.++ ..+|..+ .++|++|+|++|.++...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46777777776 2445432 246788888888887555556777788888888888764
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.05 E-value=0.016 Score=46.02 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=17.6
Q ss_pred CCCEEEcCCCcCCCCCCccCCCCCcCCeeeccCccC
Q 038320 141 KLRYLNLSGASFAGNIPPSFGNLSSLQILDLNTFYY 176 (467)
Q Consensus 141 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~ 176 (467)
+|++|+|++|.++...+..|..+++|++|+|++|++
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 355555555555533333344455555555555543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=47.10 E-value=28 Score=25.46 Aligned_cols=45 Identities=11% Similarity=0.075 Sum_probs=25.5
Q ss_pred CCcCCCccccCCCCCCEEEccCCcCcccccccccCCCCCCEEECcC
Q 038320 356 LGGFLPNSLGQLENLKILQLWGNLFRGSIPESIGNLSSLRELYLHN 401 (467)
Q Consensus 356 i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~ 401 (467)
++..-...|.++.+|+.+.|-.+ ++..-...|.+|.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34344456666666776666554 2223344566666676666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.74 E-value=21 Score=26.13 Aligned_cols=47 Identities=15% Similarity=0.129 Sum_probs=33.2
Q ss_pred cCcccccccccCCCCCCEEECcCCcCcccChhhhcCCCCCCEEeCcCC
Q 038320 379 LFRGSIPESIGNLSSLRELYLHNNLMDGTIPKSLGKLSHLVVLDISGN 426 (467)
Q Consensus 379 ~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n 426 (467)
.++..-...|.+|.+|+.+.+-.+ ++..-...|.+|.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344444566888899998888764 33344567888899999888764
Done!