BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038321
         (82 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4H58|A Chain A, Braf In Complex With Compound 3
 pdb|4H58|B Chain B, Braf In Complex With Compound 3
 pdb|4H58|C Chain C, Braf In Complex With Compound 3
          Length = 275

 Score = 28.1 bits (61), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/20 (65%), Positives = 15/20 (75%)

Query: 13  DVYCFGKVLLELVTGKLGIS 32
           DVY FG VL EL+TG+L  S
Sbjct: 191 DVYAFGIVLYELMTGQLPYS 210


>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
 pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
          Length = 276

 Score = 28.1 bits (61), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/20 (65%), Positives = 15/20 (75%)

Query: 13  DVYCFGKVLLELVTGKLGIS 32
           DVY FG VL EL+TG+L  S
Sbjct: 191 DVYAFGIVLYELMTGQLPYS 210


>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
 pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
          Length = 281

 Score = 28.1 bits (61), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/20 (65%), Positives = 15/20 (75%)

Query: 13  DVYCFGKVLLELVTGKLGIS 32
           DVY FG VL EL+TG+L  S
Sbjct: 196 DVYAFGIVLYELMTGQLPYS 215


>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
           A [1, 3]thiazolo[5,4-B]pyridine Derivative
 pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
           A [1, 3]thiazolo[5,4-B]pyridine Derivative
          Length = 284

 Score = 28.1 bits (61), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/20 (65%), Positives = 15/20 (75%)

Query: 13  DVYCFGKVLLELVTGKLGIS 32
           DVY FG VL EL+TG+L  S
Sbjct: 196 DVYAFGIVLYELMTGQLPYS 215


>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
 pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
          Length = 276

 Score = 28.1 bits (61), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/20 (65%), Positives = 15/20 (75%)

Query: 13  DVYCFGKVLLELVTGKLGIS 32
           DVY FG VL EL+TG+L  S
Sbjct: 191 DVYAFGIVLYELMTGQLPYS 210


>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
 pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
 pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
 pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
          Length = 307

 Score = 28.1 bits (61), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 3   LRSSVATCAYDVYCFGKVLLELVTG 27
           LR  + T   D+Y FG VLLE++TG
Sbjct: 207 LRGEI-TPKSDIYSFGVVLLEIITG 230


>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
           Tetrahydronaphthalene Inhibitor
 pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
           Tetrahydronaphthalene Inhibitor
          Length = 282

 Score = 28.1 bits (61), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/20 (65%), Positives = 15/20 (75%)

Query: 13  DVYCFGKVLLELVTGKLGIS 32
           DVY FG VL EL+TG+L  S
Sbjct: 193 DVYAFGIVLYELMTGQLPYS 212


>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
 pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
 pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
 pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
          Length = 307

 Score = 28.1 bits (61), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 3   LRSSVATCAYDVYCFGKVLLELVTG 27
           LR  + T   D+Y FG VLLE++TG
Sbjct: 207 LRGEI-TPKSDIYSFGVVLLEIITG 230


>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
 pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
 pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
 pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
 pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
           Staurosporine
 pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
           Staurosporine
 pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
           Staurosporine
 pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
           Staurosporine
 pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
           Amppnp
 pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
           Amppnp
 pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
           Amppnp
 pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
           Amppnp
          Length = 301

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 3   LRSSVATCAYDVYCFGKVLLELVTG 27
           LR  + T   D+Y FG VLLE++TG
Sbjct: 201 LRGEI-TPKSDIYSFGVVLLEIITG 224


>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
 pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
 pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
           Selective B- Raf Inhibitors
 pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
           Selective B- Raf Inhibitors
 pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
           Inhibitor
 pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
           Inhibitor
 pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
           Furopyridine Inhibitor
 pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
           Furopyridine Inhibitor
 pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
           With A Non- Oxime Furopyridine Inhibitor
 pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
           With A Non- Oxime Furopyridine Inhibitor
 pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
           Non-Oxime Furopyridine Inhibitor
 pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
           Non-Oxime Furopyridine Inhibitor
 pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
           Complex With Organometallic Inhibitor Cns292
 pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
           Complex With Organometallic Inhibitor Cns292
 pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
 pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
 pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
           Pyrazolopyridine Inhibitor
 pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
           Pyrazolopyridine Inhibitor
 pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
           Benzamide Inhibitor
 pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
           Benzamide Inhibitor
 pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
           Methoxypyrazolopyridinyl Benzamide Inhibitor
 pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
           Methoxypyrazolopyridinyl Benzamide Inhibitor
 pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
 pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
 pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
           Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
 pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
           Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
 pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
           Pyrazolopyridine Inhibitor
 pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
           Pyrazolopyridine Inhibitor
          Length = 307

 Score = 28.1 bits (61), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 17/24 (70%)

Query: 13  DVYCFGKVLLELVTGKLGISKSDD 36
           DVY FG VL EL+TG+L  S  ++
Sbjct: 219 DVYAFGIVLYELMTGQLPYSNINN 242


>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
           Inhibitor
 pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
           Inhibitor
          Length = 306

 Score = 28.1 bits (61), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 17/24 (70%)

Query: 13  DVYCFGKVLLELVTGKLGISKSDD 36
           DVY FG VL EL+TG+L  S  ++
Sbjct: 218 DVYAFGIVLYELMTGQLPYSNINN 241


>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
           Aminoisoquinoline Inhibitor
 pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
           Aminoisoquinoline Inhibitor
          Length = 300

 Score = 28.1 bits (61), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 17/24 (70%)

Query: 13  DVYCFGKVLLELVTGKLGISKSDD 36
           DVY FG VL EL+TG+L  S  ++
Sbjct: 211 DVYAFGIVLYELMTGQLPYSNINN 234


>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
           Dihydroquinazoline Inhibitor
 pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
           Dihydroquinazoline Inhibitor
          Length = 307

 Score = 28.1 bits (61), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 17/24 (70%)

Query: 13  DVYCFGKVLLELVTGKLGISKSDD 36
           DVY FG VL EL+TG+L  S  ++
Sbjct: 219 DVYAFGIVLYELMTGQLPYSNINN 242


>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
 pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
          Length = 280

 Score = 28.1 bits (61), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 17/24 (70%)

Query: 13  DVYCFGKVLLELVTGKLGISKSDD 36
           DVY FG VL EL+TG+L  S  ++
Sbjct: 195 DVYAFGIVLYELMTGQLPYSNINN 218


>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
           Plx4032
 pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
           Plx4032
          Length = 289

 Score = 28.1 bits (61), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 17/24 (70%)

Query: 13  DVYCFGKVLLELVTGKLGISKSDD 36
           DVY FG VL EL+TG+L  S  ++
Sbjct: 207 DVYAFGIVLYELMTGQLPYSNINN 230


>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
           Plx3203
 pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
           Plx3203
          Length = 292

 Score = 27.7 bits (60), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 17/24 (70%)

Query: 13  DVYCFGKVLLELVTGKLGISKSDD 36
           DVY FG VL EL+TG+L  S  ++
Sbjct: 207 DVYAFGIVLYELMTGQLPYSNINN 230


>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
 pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
          Length = 298

 Score = 26.9 bits (58), Expect = 3.2,   Method: Composition-based stats.
 Identities = 10/15 (66%), Positives = 13/15 (86%)

Query: 13  DVYCFGKVLLELVTG 27
           D+Y FG VLLE++TG
Sbjct: 207 DIYSFGVVLLEIITG 221


>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
 pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
          Length = 307

 Score = 26.2 bits (56), Expect = 4.7,   Method: Composition-based stats.
 Identities = 12/20 (60%), Positives = 15/20 (75%)

Query: 13  DVYCFGKVLLELVTGKLGIS 32
           DVY +G VL EL+TG+L  S
Sbjct: 219 DVYSYGIVLYELMTGELPYS 238


>pdb|3H7N|A Chain A, Structure Of Nup120
 pdb|3H7N|B Chain B, Structure Of Nup120
 pdb|3H7N|C Chain C, Structure Of Nup120
 pdb|3H7N|D Chain D, Structure Of Nup120
          Length = 729

 Score = 26.2 bits (56), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 3   LRSSVATCAYDVY-CFGKVLLELVTGKLGISKSDDATTREKFEALRISRNEKQIECTKKK 61
           L    +T + DV     K  L+++TG+L     D  TT EKF  +  +  E Q E T  K
Sbjct: 513 LNGFASTLSNDVLRSISKKFLDIITGEL----PDSMTTVEKFTDIFKNCLENQFEITNLK 568

Query: 62  II 63
           I+
Sbjct: 569 IL 570


>pdb|3F7F|A Chain A, Structure Of Nup120
 pdb|3F7F|B Chain B, Structure Of Nup120
 pdb|3F7F|C Chain C, Structure Of Nup120
 pdb|3F7F|D Chain D, Structure Of Nup120
          Length = 729

 Score = 26.2 bits (56), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 3   LRSSVATCAYDVY-CFGKVLLELVTGKLGISKSDDATTREKFEALRISRNEKQIECTKKK 61
           L    +T + DV     K  L+++TG+L     D  TT EKF  +  +  E Q E T  K
Sbjct: 513 LNGFASTLSNDVLRSISKKFLDIITGEL----PDSMTTVEKFTDIFKNCLENQFEITNLK 568

Query: 62  II 63
           I+
Sbjct: 569 IL 570


>pdb|3HXR|A Chain A, Nucleoporin Nup120 From S.Cerevisiae (Aa 1-757)
          Length = 761

 Score = 26.2 bits (56), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 3   LRSSVATCAYDVY-CFGKVLLELVTGKLGISKSDDATTREKFEALRISRNEKQIECTKKK 61
           L    +T + DV     K  L+++TG+L     D  TT EKF  +  +  E Q E T  K
Sbjct: 517 LNGFASTLSNDVLRSISKKFLDIITGEL----PDSXTTVEKFTDIFKNCLENQFEITNLK 572

Query: 62  II 63
           I+
Sbjct: 573 IL 574


>pdb|2VPQ|A Chain A, Crystal Structure Of Biotin Carboxylase From S. Aureus
           Complexed With Amppnp
 pdb|2VPQ|B Chain B, Crystal Structure Of Biotin Carboxylase From S. Aureus
           Complexed With Amppnp
          Length = 451

 Score = 26.2 bits (56), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 27/55 (49%)

Query: 25  VTGKLGISKSDDATTREKFEALRISRNEKQIECTKKKIIHRSEFRFGEHPLYFDQ 79
           +  K+G      AT     + +R++R+EK++E   +     ++  FG   LY ++
Sbjct: 146 IAKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEK 200


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,117,508
Number of Sequences: 62578
Number of extensions: 60226
Number of successful extensions: 262
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 241
Number of HSP's gapped (non-prelim): 24
length of query: 82
length of database: 14,973,337
effective HSP length: 51
effective length of query: 31
effective length of database: 11,781,859
effective search space: 365237629
effective search space used: 365237629
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)