BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038323
         (205 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O48915|NDR1_ARATH Protein NDR1 OS=Arabidopsis thaliana GN=NDR1 PE=1 SV=1
          Length = 219

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 79/188 (42%), Gaps = 19/188 (10%)

Query: 5   NDKNKASKGSSLGPTVGKIIAIILLLAGVTALTLWLVYRPHKPRFSVVAAAIYNINASSP 64
           N++N+ ++G   G          +  AG+T+L LWL  R  KP+ S+    I  +     
Sbjct: 2   NNQNEDTEG---GRNCCTCCLSFIFTAGLTSLFLWLSLRADKPKCSIQNFFIPALGKDPN 58

Query: 65  PFISTSMQFTLVTRNSNRRVDIIYDKLS-AYVSYRDQQITAPVY-------LPPLYHERK 116
              +T++ F +   N N+   I YD +   + +    +I +          +P  Y   K
Sbjct: 59  SRDNTTLNFMVRCDNPNKDKGIYYDDVHLNFSTINTTKINSSALVLVGNYTVPKFYQGHK 118

Query: 117 STVALSPVLGGAGQLVPVSAEVVNGLMMDESYGVVSFRVVLLGRLRWKAGAIKTARYGVY 176
                       GQ+ P++ + V   ++    G   FR+ L  ++R+K    KT RYGV 
Sbjct: 119 KKAK------KWGQVKPLNNQTVLRAVLPN--GSAVFRLDLKTQVRFKIVFWKTKRYGVE 170

Query: 177 VKCDVWVG 184
           V  DV V 
Sbjct: 171 VGADVEVN 178


>sp|Q9C615|SYP24_ARATH Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1
          Length = 416

 Score = 43.1 bits (100), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 10/129 (7%)

Query: 43  RPHKPRFSVVAAAIYNINASSPPFISTSMQFTLVTRNSNRRVDIIYDKLSAYVSYRDQQI 102
           R +  +F V  A + + +  S   +  S+   L  RNS   + I YD+  A V Y +Q++
Sbjct: 3   RSNDVKFQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRL 62

Query: 103 TAPVYLPPLYHERKSTVALSPVLGGAGQLVPVSAEVVNGLMMDESYGV--------VSFR 154
            A V +P  Y   K+T+ L  +  G   LV +          D+  GV        ++FR
Sbjct: 63  GA-VPMPLFYLGSKNTMLLRALFEGQT-LVLLKGNERKKFEDDQKTGVYRIDVKLSINFR 120

Query: 155 VVLLGRLRW 163
           V++L  + W
Sbjct: 121 VMVLHLVTW 129


>sp|P35378|FSHR_MOUSE Follicle-stimulating hormone receptor OS=Mus musculus GN=Fshr PE=2
           SV=2
          Length = 692

 Score = 30.4 bits (67), Expect = 8.6,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 60/140 (42%), Gaps = 8/140 (5%)

Query: 1   MTTGNDKNKASKGSSLGPTVGKIIAIILLLAGVTALTLWLVYRPHKPRFSVVAAAIYNIN 60
           +++  D   A + ++L  T    +A IL  A   +L + L+      +  ++    Y IN
Sbjct: 561 VSSSRDTKIAKRMATLIFTDFLCMAPILFFAISASLKVPLIT---VSKAKILLVLFYPIN 617

Query: 61  ASSPPFISTSMQFTLVTRNSNRRVDIIYDKLSAYVSYRDQQITAPVYLPPLYHERKSTVA 120
           + + PF+     + + T+N  R   ++  K   Y        T    +   +H RK+  +
Sbjct: 618 SCANPFL-----YAIFTKNFRRDFFVLMSKFGCYEVQAQIYKTETSSITHNFHSRKNPCS 672

Query: 121 LSPVLGGAGQLVPVSAEVVN 140
            +P +  +  LVP++  V N
Sbjct: 673 SAPRVTNSYVLVPLNHSVQN 692


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.136    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,272,705
Number of Sequences: 539616
Number of extensions: 2844433
Number of successful extensions: 6103
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6101
Number of HSP's gapped (non-prelim): 6
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)