Query 038323
Match_columns 205
No_of_seqs 111 out of 819
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 09:50:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038323.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038323hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 1.3E-36 2.9E-41 245.9 23.4 184 10-205 30-217 (219)
2 PF03168 LEA_2: Late embryogen 99.5 2.7E-13 5.9E-18 96.2 8.1 98 74-179 1-101 (101)
3 smart00769 WHy Water Stress an 98.6 7.1E-07 1.5E-11 63.6 10.1 61 65-127 11-72 (100)
4 PF07092 DUF1356: Protein of u 98.0 0.0022 4.7E-08 52.4 18.4 112 10-127 68-181 (238)
5 COG5608 LEA14-like dessication 97.6 0.0029 6.3E-08 48.0 12.0 106 45-162 31-137 (161)
6 PF12751 Vac7: Vacuolar segreg 97.1 0.0011 2.4E-08 57.5 5.5 53 47-103 329-381 (387)
7 PLN03160 uncharacterized prote 95.9 0.23 5E-06 40.3 12.0 106 7-120 30-147 (219)
8 COG4698 Uncharacterized protei 80.2 0.66 1.4E-05 36.3 0.4 42 13-56 7-48 (197)
9 PF11906 DUF3426: Protein of u 77.0 5.3 0.00012 29.9 4.6 76 50-126 49-135 (149)
10 KOG3950 Gamma/delta sarcoglyca 74.5 12 0.00025 31.0 6.1 23 66-88 105-127 (292)
11 PF06072 Herpes_US9: Alphaherp 71.2 0.28 6.1E-06 31.2 -3.0 10 8-17 24-33 (60)
12 PRK05529 cell division protein 70.1 5.1 0.00011 33.3 3.2 44 46-90 58-128 (255)
13 PF12575 DUF3753: Protein of u 67.4 2.9 6.2E-05 27.8 1.0 10 7-16 36-45 (72)
14 PRK07021 fliL flagellar basal 63.7 18 0.00039 27.8 5.0 18 85-102 77-94 (162)
15 PF14155 DUF4307: Domain of un 62.0 57 0.0012 23.5 9.7 79 37-128 21-101 (112)
16 COG1580 FliL Flagellar basal b 57.0 38 0.00081 26.1 5.7 25 18-42 18-42 (159)
17 TIGR02588 conserved hypothetic 53.4 31 0.00068 25.4 4.4 49 27-82 12-62 (122)
18 PRK10893 lipopolysaccharide ex 50.7 86 0.0019 24.8 7.0 29 43-73 37-65 (192)
19 PF12505 DUF3712: Protein of u 50.3 41 0.00089 24.4 4.8 27 67-94 98-124 (125)
20 PF10907 DUF2749: Protein of u 48.6 30 0.00065 22.5 3.2 16 30-45 13-28 (66)
21 COG5353 Uncharacterized protei 47.2 8.3 0.00018 29.4 0.6 31 15-45 4-34 (161)
22 KOG3927 Na+/K+ ATPase, beta su 45.6 5.4 0.00012 34.0 -0.6 52 10-62 38-92 (300)
23 COG2332 CcmE Cytochrome c-type 43.9 28 0.00062 26.5 3.0 58 79-145 80-140 (153)
24 PF15012 DUF4519: Domain of un 42.3 28 0.0006 22.0 2.3 13 33-45 44-56 (56)
25 PF09624 DUF2393: Protein of u 42.0 99 0.0021 23.0 5.9 58 37-103 36-95 (149)
26 PF09865 DUF2092: Predicted pe 41.9 1.9E+02 0.004 23.4 8.6 38 65-103 35-74 (214)
27 PF06092 DUF943: Enterobacteri 39.5 19 0.00041 27.7 1.6 16 29-44 13-28 (157)
28 COG1589 FtsQ Cell division sep 39.2 10 0.00022 31.6 0.1 36 23-58 34-69 (269)
29 PF04478 Mid2: Mid2 like cell 39.1 26 0.00057 26.8 2.2 24 26-49 59-82 (154)
30 CHL00020 psbN photosystem II p 36.4 52 0.0011 19.6 2.7 22 23-44 8-29 (43)
31 PF07423 DUF1510: Protein of u 36.2 14 0.00031 30.0 0.4 21 8-28 4-24 (217)
32 PRK05696 fliL flagellar basal 35.8 27 0.00058 27.1 1.9 17 86-102 86-102 (170)
33 PF11837 DUF3357: Domain of un 35.2 13 0.00027 26.6 0.0 20 18-37 29-48 (106)
34 PF09911 DUF2140: Uncharacteri 34.8 50 0.0011 26.1 3.3 28 18-47 4-31 (187)
35 PRK13183 psbN photosystem II r 34.8 54 0.0012 19.8 2.7 22 23-44 11-32 (46)
36 PF02468 PsbN: Photosystem II 34.6 37 0.00079 20.2 1.9 22 23-44 8-29 (43)
37 PF06024 DUF912: Nucleopolyhed 34.3 80 0.0017 22.2 4.0 24 20-43 64-88 (101)
38 PF11322 DUF3124: Protein of u 32.7 2.1E+02 0.0045 21.2 6.1 53 65-121 19-73 (125)
39 PF00927 Transglut_C: Transglu 32.0 56 0.0012 22.8 3.0 61 66-126 12-75 (107)
40 PF10749 DUF2534: Protein of u 32.0 17 0.00036 24.8 0.2 26 6-31 5-30 (85)
41 PRK06531 yajC preprotein trans 31.9 14 0.00029 26.9 -0.3 8 38-45 16-23 (113)
42 PF14283 DUF4366: Domain of un 31.6 57 0.0012 26.5 3.2 22 28-49 169-190 (218)
43 PF09604 Potass_KdpF: F subuni 31.3 7.4 0.00016 20.4 -1.3 19 27-45 5-23 (25)
44 PF04573 SPC22: Signal peptida 30.0 1.2E+02 0.0025 23.8 4.6 12 42-53 32-43 (175)
45 PF04790 Sarcoglycan_1: Sarcog 29.8 1.9E+02 0.0041 24.2 6.1 18 66-83 83-100 (264)
46 PF05966 Chordopox_A33R: Chord 28.0 20 0.00043 28.5 0.0 85 12-100 37-122 (190)
47 PHA03164 hypothetical protein; 28.0 29 0.00063 23.3 0.8 16 8-23 52-67 (88)
48 PF07116 DUF1372: Protein of u 27.1 33 0.00072 24.3 1.0 12 1-13 1-12 (104)
49 PRK08455 fliL flagellar basal 26.8 25 0.00054 27.7 0.4 15 87-101 103-117 (182)
50 PRK14759 potassium-transportin 25.9 11 0.00025 20.4 -1.2 19 27-45 9-27 (29)
51 PRK10927 essential cell divisi 25.7 1.1E+02 0.0024 26.3 4.1 11 137-147 259-269 (319)
52 TIGR02745 ccoG_rdxA_fixG cytoc 25.2 5.1E+02 0.011 23.4 10.3 19 110-128 382-400 (434)
53 PF06129 Chordopox_G3: Chordop 24.5 54 0.0012 23.7 1.7 67 33-100 12-86 (109)
54 TIGR02115 potass_kdpF K+-trans 24.5 6.1 0.00013 20.9 -2.3 18 28-45 5-22 (26)
55 PF12505 DUF3712: Protein of u 24.2 2.8E+02 0.006 19.9 7.3 65 101-174 2-68 (125)
56 PF10969 DUF2771: Protein of u 24.2 38 0.00082 26.1 0.9 9 44-52 32-40 (161)
57 PF14874 PapD-like: Flagellar- 24.1 2.4E+02 0.0051 19.1 7.2 70 47-126 2-72 (102)
58 PRK13159 cytochrome c-type bio 23.8 1.6E+02 0.0035 22.6 4.3 14 132-145 126-139 (155)
59 PF05170 AsmA: AsmA family; I 23.7 4.9E+02 0.011 24.0 8.4 68 86-161 468-535 (604)
60 PF14828 Amnionless: Amnionles 23.2 52 0.0011 29.6 1.8 30 20-49 340-369 (437)
61 PRK10263 DNA translocase FtsK; 22.8 24 0.00053 36.0 -0.4 46 6-51 8-53 (1355)
62 TIGR03726 strep_RK_lipo putati 21.9 34 0.00074 19.2 0.2 21 13-33 5-25 (34)
63 COG0316 sufA Fe-S cluster asse 21.5 55 0.0012 23.6 1.3 16 70-85 86-101 (110)
64 PF09307 MHC2-interact: CLIP, 21.2 32 0.00069 25.1 0.0 9 35-43 49-57 (114)
65 PF14812 PBP1_TM: Transmembran 20.7 8.7 0.00019 26.2 -2.8 12 11-22 62-73 (81)
66 PF14927 Neurensin: Neurensin 20.5 50 0.0011 25.0 0.9 28 21-49 47-74 (140)
67 PRK11578 macrolide transporter 20.3 2.8E+02 0.0061 23.9 5.7 23 36-59 23-46 (370)
68 PHA02973 hypothetical protein; 20.2 78 0.0017 22.4 1.8 55 33-98 11-66 (102)
69 PF13253 DUF4044: Protein of u 20.1 35 0.00075 19.4 0.0 7 13-19 6-12 (35)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=245.93 Aligned_cols=184 Identities=16% Similarity=0.232 Sum_probs=155.2
Q ss_pred ccCCCCccceehhhHHHHHHHHHHheeeeEEEEecCCCEEEEEeeEEeeecCCC----CCeEeEEEEEEEEeeCCCCeee
Q 038323 10 ASKGSSLGPTVGKIIAIILLLAGVTALTLWLVYRPHKPRFSVVAAAIYNINASS----PPFISTSMQFTLVTRNSNRRVD 85 (205)
Q Consensus 10 ~~~~~~~~~~~~~~l~~~~~~lg~~~~i~~lvlrP~~P~~~V~~~~l~~~~~~~----~~~l~~~~~~~l~~~NpN~~~~ 85 (205)
++|+++|.+||+++++++++++++++.++|++|||++|+|+|+++++++|++++ +..+|++++++++++|||. .+
T Consensus 30 ~~~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~ 108 (219)
T PLN03160 30 KTRRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-AS 108 (219)
T ss_pred ccccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-ee
Confidence 345556666666666666666667777889999999999999999999999864 2468888999999999998 89
Q ss_pred EEEcceEEEEEECCEEeeCCCCCCCeeecCCCeeEEeEEEEeeceeeecCHHHHHHhhcccccCeEEEEEEEEEEEEEEE
Q 038323 86 IIYDKLSAYVSYRDQQITAPVYLPPLYHERKSTVALSPVLGGAGQLVPVSAEVVNGLMMDESYGVVSFRVVLLGRLRWKA 165 (205)
Q Consensus 86 i~y~~~~~~v~Y~g~~lg~~~~lp~f~q~~~~t~~~~~~l~~~~~~~~l~~~~~~~l~~d~~~G~v~~~v~~~~~v~~~~ 165 (205)
++|+++++.++|+|+.+| .+.+|+|+|++++++.+++++...+ ..+.+ ..+|.+|.++|.++|+++++.+.++++
T Consensus 109 ~~Y~~~~~~v~Y~g~~vG-~a~~p~g~~~ar~T~~l~~tv~~~~--~~~~~--~~~L~~D~~~G~v~l~~~~~v~gkVkv 183 (219)
T PLN03160 109 FKYSNTTTTIYYGGTVVG-EARTPPGKAKARRTMRMNVTVDIIP--DKILS--VPGLLTDISSGLLNMNSYTRIGGKVKI 183 (219)
T ss_pred EEEcCeEEEEEECCEEEE-EEEcCCcccCCCCeEEEEEEEEEEe--ceecc--chhHHHHhhCCeEEEEEEEEEEEEEEE
Confidence 999999999999999999 8999999999999999999876555 33322 246888999999999999999999999
Q ss_pred cEEEEeeeeEEEEEEEEEeCccCCCccccccCCCCceeeC
Q 038323 166 GAIKTARYGVYVKCDVWVGLKKGFTGEVPLLSAPPCKVDI 205 (205)
Q Consensus 166 g~~~~~~~~~~v~C~l~v~~~~~~~~~~~~~~~~~C~v~~ 205 (205)
|.+.++++.++++|++.+++++. .++..+|+.++
T Consensus 184 ~~i~k~~v~~~v~C~v~V~~~~~------~i~~~~C~~~~ 217 (219)
T PLN03160 184 LKIIKKHVVVKMNCTMTVNITSQ------AIQGQKCKRHV 217 (219)
T ss_pred EEEEEEEEEEEEEeEEEEECCCC------EEeccEecccc
Confidence 99989999999999999988652 66788999874
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.46 E-value=2.7e-13 Score=96.22 Aligned_cols=98 Identities=26% Similarity=0.257 Sum_probs=71.9
Q ss_pred EEEeeCCCCeeeEEEcceEEEEEECCEEeeCCCCCCCeeecCCCeeEEeEEEEeeceeeecCHHHHHHhhcccccCeEEE
Q 038323 74 TLVTRNSNRRVDIIYDKLSAYVSYRDQQITAPVYLPPLYHERKSTVALSPVLGGAGQLVPVSAEVVNGLMMDESYGVVSF 153 (205)
Q Consensus 74 ~l~~~NpN~~~~i~y~~~~~~v~Y~g~~lg~~~~lp~f~q~~~~t~~~~~~l~~~~~~~~l~~~~~~~l~~d~~~G~v~~ 153 (205)
+|+++|||. ++++|++++++++|+|..+|.....|+|+|++++++.+.+.+..+. ..+ .+.+.++. .|..++
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~--~~l----~~~l~~~~-~~~~~~ 72 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDY--SDL----PRLLKDLL-AGRVPF 72 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEH--HHH----HHHHHHHH-HTTSCE
T ss_pred CEEEECCCc-eeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcH--HHH----HHHHHhhh-ccccce
Confidence 588999999 9999999999999999999944788999999999999998887776 333 34555555 556666
Q ss_pred EEEEEEEEEEEE---cEEEEeeeeEEEEE
Q 038323 154 RVVLLGRLRWKA---GAIKTARYGVYVKC 179 (205)
Q Consensus 154 ~v~~~~~v~~~~---g~~~~~~~~~~v~C 179 (205)
++.+++++++++ +.+.+.+++++..|
T Consensus 73 ~v~~~~~g~~~v~~~~~~~~~~v~~~~~~ 101 (101)
T PF03168_consen 73 DVTYRIRGTFKVLGTPIFGSVRVPVSCEC 101 (101)
T ss_dssp EEEEEEEEEEE-EE-TTTSCEEEEEEEEE
T ss_pred EEEEEEEEEEEEcccceeeeEEEeEEeEC
Confidence 777777777774 33344445555444
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.59 E-value=7.1e-07 Score=63.63 Aligned_cols=61 Identities=11% Similarity=0.050 Sum_probs=55.7
Q ss_pred CeEeEEEEEEEEeeCCCCeeeEEEcceEEEEEECCEEeeCCCCCC-CeeecCCCeeEEeEEEEe
Q 038323 65 PFISTSMQFTLVTRNSNRRVDIIYDKLSAYVSYRDQQITAPVYLP-PLYHERKSTVALSPVLGG 127 (205)
Q Consensus 65 ~~l~~~~~~~l~~~NpN~~~~i~y~~~~~~v~Y~g~~lg~~~~lp-~f~q~~~~t~~~~~~l~~ 127 (205)
+.++.++.+.++++|||. +++.|++++..++|+|..+| ++..+ ++..++++++.+.+.+..
T Consensus 11 ~~~~~~~~l~l~v~NPN~-~~l~~~~~~y~l~~~g~~v~-~g~~~~~~~ipa~~~~~v~v~~~~ 72 (100)
T smart00769 11 SGLEIEIVLKVKVQNPNP-FPIPVNGLSYDLYLNGVELG-SGEIPDSGTLPGNGRTVLDVPVTV 72 (100)
T ss_pred cceEEEEEEEEEEECCCC-CccccccEEEEEEECCEEEE-EEEcCCCcEECCCCcEEEEEEEEe
Confidence 458899999999999998 99999999999999999999 78885 799999999999888776
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=97.98 E-value=0.0022 Score=52.40 Aligned_cols=112 Identities=16% Similarity=0.094 Sum_probs=69.3
Q ss_pred ccCCCCccceehhhHHHHHHHHHHheeeeEEEEecCCCEEEEEeeEEeeecCCC-CCeEeEEEEEEEEeeCCCCeeeEEE
Q 038323 10 ASKGSSLGPTVGKIIAIILLLAGVTALTLWLVYRPHKPRFSVVAAAIYNINASS-PPFISTSMQFTLVTRNSNRRVDIIY 88 (205)
Q Consensus 10 ~~~~~~~~~~~~~~l~~~~~~lg~~~~i~~lvlrP~~P~~~V~~~~l~~~~~~~-~~~l~~~~~~~l~~~NpN~~~~i~y 88 (205)
|=|+|+-+.+.+..+++.+++.|+++ ++ +-||.-.++-.++.......+. .+.+..++.-.|.+.|||- .++..
T Consensus 68 RLKPrRTklyV~~sV~~CLl~~~L~i--FF--LfPRsV~v~~~gv~s~~V~f~~~~~~v~l~itn~lNIsN~NF-y~V~V 142 (238)
T PF07092_consen 68 RLKPRRTKLYVFLSVLLCLLLSGLVI--FF--LFPRSVTVSPVGVKSVTVSFNPDKSTVQLNITNTLNISNPNF-YPVTV 142 (238)
T ss_pred ccCCceeEEEeeHHHHHHHHHHHheE--EE--EeCcEEEEecCcEEEEEEEEeCCCCEEEEEEEEEEEccCCCE-EEEEE
Confidence 44555444444433333333333332 22 4566554443333333322222 2568889999999999996 99999
Q ss_pred cceEEEEEECCEEeeCCCCCC-CeeecCCCeeEEeEEEEe
Q 038323 89 DKLSAYVSYRDQQITAPVYLP-PLYHERKSTVALSPVLGG 127 (205)
Q Consensus 89 ~~~~~~v~Y~g~~lg~~~~lp-~f~q~~~~t~~~~~~l~~ 127 (205)
.++++++.|....+| .+... -...+|++.+.+...+..
T Consensus 143 t~~s~qv~~~~~VVG-~~~~~~~~~I~Prs~~q~~~tV~t 181 (238)
T PF07092_consen 143 TNLSIQVLYMKTVVG-KGKNSNITVIGPRSSKQVNYTVKT 181 (238)
T ss_pred EeEEEEEEEEEeEEe-eeEecceEEecccCCceEEEEeeE
Confidence 999999999999999 66554 346777777766665543
No 5
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=97.57 E-value=0.0029 Score=47.99 Aligned_cols=106 Identities=19% Similarity=0.082 Sum_probs=73.5
Q ss_pred CCCEEEEEeeEEeeecCCCCCeEeEEEEEEEEeeCCCCeeeEEEcceEEEEEECCEEeeCCCCCCCeeecCCCeeEEeEE
Q 038323 45 HKPRFSVVAAAIYNINASSPPFISTSMQFTLVTRNSNRRVDIIYDKLSAYVSYRDQQITAPVYLPPLYHERKSTVALSPV 124 (205)
Q Consensus 45 ~~P~~~V~~~~l~~~~~~~~~~l~~~~~~~l~~~NpN~~~~i~y~~~~~~v~Y~g~~lg~~~~lp~f~q~~~~t~~~~~~ 124 (205)
+.|.+.--.+..-... .....+-.++.++|||. +++-...++..++-+|..+|-.-.+.++..+|++..++.+.
T Consensus 31 ~~p~ve~~ka~wGkvt-----~s~~EiV~t~KiyNPN~-fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~ 104 (161)
T COG5608 31 KKPGVESMKAKWGKVT-----NSETEIVGTLKIYNPNP-FPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDVP 104 (161)
T ss_pred CCCCceEEEEEEEEEe-----ccceEEEEEEEecCCCC-cceeeeceEEEEEEcceEeeccccccceEECCCCeEEEEEE
Confidence 5566554444444432 25568888999999998 99999999999999999999333457899999999999998
Q ss_pred EEeeceeeecCHHHHHHhhcccccCeE-EEEEEEEEEEE
Q 038323 125 LGGAGQLVPVSAEVVNGLMMDESYGVV-SFRVVLLGRLR 162 (205)
Q Consensus 125 l~~~~~~~~l~~~~~~~l~~d~~~G~v-~~~v~~~~~v~ 162 (205)
+..+. -.+.+.- ...+.+|.- +.++++.+.+.
T Consensus 105 l~~d~--~~~ke~w----~~hi~ngErs~Ir~~i~~~v~ 137 (161)
T COG5608 105 LRLDN--SKIKEWW----VTHIENGERSTIRVRIKGVVK 137 (161)
T ss_pred EEEeh--HHHHHHH----HHHhhccCcccEEEEEEEEEE
Confidence 88776 3444433 333454432 44444444433
No 6
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=97.06 E-value=0.0011 Score=57.47 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=39.1
Q ss_pred CEEEEEeeEEeeecCCCCCeEeEEEEEEEEeeCCCCeeeEEEcceEEEEEECCEEee
Q 038323 47 PRFSVVAAAIYNINASSPPFISTSMQFTLVTRNSNRRVDIIYDKLSAYVSYRDQQIT 103 (205)
Q Consensus 47 P~~~V~~~~l~~~~~~~~~~l~~~~~~~l~~~NpN~~~~i~y~~~~~~v~Y~g~~lg 103 (205)
|--.|+-..+++.=. +.-..-|++++.+.|||. +.|..+..+++++-+...+|
T Consensus 329 pL~~v~v~~I~NVla---S~qELmfdl~V~A~NPn~-~~V~I~d~dldIFAKS~yvg 381 (387)
T PF12751_consen 329 PLTDVQVVSIQNVLA---SEQELMFDLTVEAFNPNW-FTVTIDDMDLDIFAKSRYVG 381 (387)
T ss_pred ccccceEEEeeeeee---ccceEEEeeEEEEECCCe-EEEEeccceeeeEecCCccC
Confidence 433444444444433 346778999999999997 99999999999998766665
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=95.92 E-value=0.23 Score=40.33 Aligned_cols=106 Identities=13% Similarity=0.082 Sum_probs=67.8
Q ss_pred cccccCCCCccceehhhHHHHHHHHHHheeeeEEEEecC--CCEEEEEeeEEee-------ecCCC--C-CeEeEEEEEE
Q 038323 7 KNKASKGSSLGPTVGKIIAIILLLAGVTALTLWLVYRPH--KPRFSVVAAAIYN-------INASS--P-PFISTSMQFT 74 (205)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~~~~~~lg~~~~i~~lvlrP~--~P~~~V~~~~l~~-------~~~~~--~-~~l~~~~~~~ 74 (205)
+.||++...|+.|+|++++++++++++++++++=.=.|+ .-.++++++.+.. +|++- + ..-|.|. +.
T Consensus 30 ~~~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~ 108 (219)
T PLN03160 30 KTRRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-AS 108 (219)
T ss_pred ccccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-ee
Confidence 468999999999999998888888888888777677774 4566666666532 23221 0 1224444 44
Q ss_pred EEeeCCCCeeeEEEcceEEEEEECCEEeeCCCCCCCeeecCCCeeE
Q 038323 75 LVTRNSNRRVDIIYDKLSAYVSYRDQQITAPVYLPPLYHERKSTVA 120 (205)
Q Consensus 75 l~~~NpN~~~~i~y~~~~~~v~Y~g~~lg~~~~lp~f~q~~~~t~~ 120 (205)
+..+| ..+.++|+...+.- ..+. .+..|++.+..-+.+.
T Consensus 109 ~~Y~~--~~~~v~Y~g~~vG~----a~~p-~g~~~ar~T~~l~~tv 147 (219)
T PLN03160 109 FKYSN--TTTTIYYGGTVVGE----ARTP-PGKAKARRTMRMNVTV 147 (219)
T ss_pred EEEcC--eEEEEEECCEEEEE----EEcC-CcccCCCCeEEEEEEE
Confidence 55543 34889998865533 3344 4566666666555553
No 8
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.18 E-value=0.66 Score=36.34 Aligned_cols=42 Identities=14% Similarity=0.021 Sum_probs=26.6
Q ss_pred CCCccceehhhHHHHHHHHHHheeeeEEEEecCCCEEEEEeeEE
Q 038323 13 GSSLGPTVGKIIAIILLLAGVTALTLWLVYRPHKPRFSVVAAAI 56 (205)
Q Consensus 13 ~~~~~~~~~~~l~~~~~~lg~~~~i~~lvlrP~~P~~~V~~~~l 56 (205)
..+.++++|.+++++.++++ ++++..++.|+.|..++.+++=
T Consensus 7 ~~n~WKw~f~iLLAln~l~~--~~i~~~vlsp~ee~t~~~~a~~ 48 (197)
T COG4698 7 TLNYWKWLFFILLALNTLLA--VLIALFVLSPREEPTHLEDASE 48 (197)
T ss_pred cccHHHHHHHHHHHHHHHHH--HHhheeeccCCCCCchhhccCc
Confidence 33556777777666555443 5555567899987666665543
No 9
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=76.96 E-value=5.3 Score=29.95 Aligned_cols=76 Identities=14% Similarity=0.069 Sum_probs=46.4
Q ss_pred EEEeeEEeeecCCCCCeEeEEEEEEEEeeCCCCeeeEEEcceEEEEE-ECCEEeeCCCCCC----------CeeecCCCe
Q 038323 50 SVVAAAIYNINASSPPFISTSMQFTLVTRNSNRRVDIIYDKLSAYVS-YRDQQITAPVYLP----------PLYHERKST 118 (205)
Q Consensus 50 ~V~~~~l~~~~~~~~~~l~~~~~~~l~~~NpN~~~~i~y~~~~~~v~-Y~g~~lg~~~~lp----------~f~q~~~~t 118 (205)
.++.+++++..+.....-.-.+.++.+++|... ....|-.+++.++ -+|+.++.....| .-..+++.+
T Consensus 49 ~~~~l~i~~~~~~~~~~~~~~l~v~g~i~N~~~-~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~ 127 (149)
T PF11906_consen 49 DIDALKIESSDLRPVPDGPGVLVVSGTIRNRAD-FPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGES 127 (149)
T ss_pred CcceEEEeeeeEEeecCCCCEEEEEEEEEeCCC-CcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCe
Confidence 445555544333221223456778888899987 8999999999998 6788887322224 234445555
Q ss_pred eEEeEEEE
Q 038323 119 VALSPVLG 126 (205)
Q Consensus 119 ~~~~~~l~ 126 (205)
..+.+.+.
T Consensus 128 ~~~~~~~~ 135 (149)
T PF11906_consen 128 VPFRLRLE 135 (149)
T ss_pred EEEEEEee
Confidence 55555444
No 10
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=74.47 E-value=12 Score=30.99 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=17.5
Q ss_pred eEeEEEEEEEEeeCCCCeeeEEE
Q 038323 66 FISTSMQFTLVTRNSNRRVDIIY 88 (205)
Q Consensus 66 ~l~~~~~~~l~~~NpN~~~~i~y 88 (205)
.+...=++++.++|||.++.-++
T Consensus 105 ~~~S~rnvtvnarn~~g~v~~~l 127 (292)
T KOG3950|consen 105 YLQSARNVTVNARNPNGKVTGQL 127 (292)
T ss_pred EEEeccCeeEEccCCCCceeeeE
Confidence 56667789999999998765443
No 11
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=71.24 E-value=0.28 Score=31.20 Aligned_cols=10 Identities=0% Similarity=-0.071 Sum_probs=5.4
Q ss_pred ccccCCCCcc
Q 038323 8 NKASKGSSLG 17 (205)
Q Consensus 8 ~~~~~~~~~~ 17 (205)
++|||+++|.
T Consensus 24 ~~r~RrRrc~ 33 (60)
T PF06072_consen 24 ASRRRRRRCR 33 (60)
T ss_pred HHHHHHHHHH
Confidence 4555555555
No 12
>PRK05529 cell division protein FtsQ; Provisional
Probab=70.05 E-value=5.1 Score=33.27 Aligned_cols=44 Identities=5% Similarity=0.097 Sum_probs=27.5
Q ss_pred CCEEEEEeeEEeeecCCC------------C-C--------------eEeEEEEEEEEeeCCCCeeeEEEcc
Q 038323 46 KPRFSVVAAAIYNINASS------------P-P--------------FISTSMQFTLVTRNSNRRVDIIYDK 90 (205)
Q Consensus 46 ~P~~~V~~~~l~~~~~~~------------~-~--------------~l~~~~~~~l~~~NpN~~~~i~y~~ 90 (205)
.|.|.|+.+.+++-..-+ + + .+-.-=+++++-+.||. +.|+..+
T Consensus 58 Sp~~~v~~I~V~Gn~~vs~~eI~~~~~~~~g~~l~~vd~~~~~~~l~~~P~V~sa~V~r~~P~t-l~I~V~E 128 (255)
T PRK05529 58 SPLLALRSIEVAGNMRVKPQDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKPPGT-IVVRVVE 128 (255)
T ss_pred CCceEEEEEEEECCccCCHHHHHHHhcccCCCcceeECHHHHHHHHhcCCCEeEEEEEEeCCCE-EEEEEEE
Confidence 489999999997644211 0 0 12223356677789987 7777754
No 13
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=67.41 E-value=2.9 Score=27.80 Aligned_cols=10 Identities=30% Similarity=0.189 Sum_probs=4.1
Q ss_pred cccccCCCCc
Q 038323 7 KNKASKGSSL 16 (205)
Q Consensus 7 ~~~~~~~~~~ 16 (205)
+.|+++...+
T Consensus 36 ~~~~~~~~~~ 45 (72)
T PF12575_consen 36 KLKNNKNNKN 45 (72)
T ss_pred cccccCCCCc
Confidence 3344444333
No 14
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=63.69 E-value=18 Score=27.79 Aligned_cols=18 Identities=6% Similarity=-0.151 Sum_probs=12.2
Q ss_pred eEEEcceEEEEEECCEEe
Q 038323 85 DIIYDKLSAYVSYRDQQI 102 (205)
Q Consensus 85 ~i~y~~~~~~v~Y~g~~l 102 (205)
+-+|=..++.+.+.+...
T Consensus 77 ~~rylkv~i~L~~~~~~~ 94 (162)
T PRK07021 77 ADRVLYVGLTLRLPDEAT 94 (162)
T ss_pred CceEEEEEEEEEECCHHH
Confidence 357777777777776544
No 15
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=61.97 E-value=57 Score=23.46 Aligned_cols=79 Identities=16% Similarity=0.322 Sum_probs=35.7
Q ss_pred eeEEEEe-cCCCEEEEEeeEEeeecCCCCCeEeEEEEEEEEeeCCCCeeeEEEcceEEEEEECCEEeeC-CCCCCCeeec
Q 038323 37 TLWLVYR-PHKPRFSVVAAAIYNINASSPPFISTSMQFTLVTRNSNRRVDIIYDKLSAYVSYRDQQITA-PVYLPPLYHE 114 (205)
Q Consensus 37 i~~lvlr-P~~P~~~V~~~~l~~~~~~~~~~l~~~~~~~l~~~NpN~~~~i~y~~~~~~v~Y~g~~lg~-~~~lp~f~q~ 114 (205)
+.|+.++ ...|.++-+.+.. +..+++.+..+|+++ ++|.. -..+-= -.+.|++..+|. +..+|| +
T Consensus 21 ~~w~~~~~~~~~~v~~~~~gf---~vv~d~~v~v~f~Vt---r~~~~-~a~C~V---rA~~~d~aeVGrreV~vp~---~ 87 (112)
T PF14155_consen 21 VAWFGYSQFGSPPVSAEVIGF---EVVDDSTVEVTFDVT---RDPGR-PAVCIV---RALDYDGAEVGRREVLVPP---S 87 (112)
T ss_pred HhHhhhhhccCCCceEEEEEE---EECCCCEEEEEEEEE---ECCCC-CEEEEE---EEEeCCCCEEEEEEEEECC---C
Confidence 3344433 4556654444444 333334455555544 23654 222221 124577778882 234455 3
Q ss_pred CCCeeEEeEEEEee
Q 038323 115 RKSTVALSPVLGGA 128 (205)
Q Consensus 115 ~~~t~~~~~~l~~~ 128 (205)
...+..+...+...
T Consensus 88 ~~~~~~~~v~v~Tt 101 (112)
T PF14155_consen 88 GERTVRVTVTVRTT 101 (112)
T ss_pred CCcEEEEEEEEEec
Confidence 33444455555433
No 16
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=57.05 E-value=38 Score=26.15 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=14.2
Q ss_pred ceehhhHHHHHHHHHHheeeeEEEE
Q 038323 18 PTVGKIIAIILLLAGVTALTLWLVY 42 (205)
Q Consensus 18 ~~~~~~l~~~~~~lg~~~~i~~lvl 42 (205)
.++..++++.+++++..++.+|+..
T Consensus 18 ~~I~liv~ivl~~~a~~~~~~~~~~ 42 (159)
T COG1580 18 LWILLIVLIVLLALAGAGYFFWFGS 42 (159)
T ss_pred eehHHHHHHHHHHHHHHHHHHhhhc
Confidence 3344444555555666666777665
No 17
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=53.37 E-value=31 Score=25.39 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=30.0
Q ss_pred HHHHHHHheeeeE--EEEecCCCEEEEEeeEEeeecCCCCCeEeEEEEEEEEeeCCCC
Q 038323 27 ILLLAGVTALTLW--LVYRPHKPRFSVVAAAIYNINASSPPFISTSMQFTLVTRNSNR 82 (205)
Q Consensus 27 ~~~~lg~~~~i~~--lvlrP~~P~~~V~~~~l~~~~~~~~~~l~~~~~~~l~~~NpN~ 82 (205)
++++++++.++.| +.-+++.|.+.+.......- ....+-+-++++|--.
T Consensus 12 ~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r~-------~~gqyyVpF~V~N~gg 62 (122)
T TIGR02588 12 TLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVERM-------QTGQYYVPFAIHNLGG 62 (122)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCeEEEeehheeEE-------eCCEEEEEEEEEeCCC
Confidence 3444445555555 44567889998877666442 3334666677778765
No 18
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=50.72 E-value=86 Score=24.83 Aligned_cols=29 Identities=10% Similarity=0.126 Sum_probs=20.8
Q ss_pred ecCCCEEEEEeeEEeeecCCCCCeEeEEEEE
Q 038323 43 RPHKPRFSVVAAAIYNINASSPPFISTSMQF 73 (205)
Q Consensus 43 rP~~P~~~V~~~~l~~~~~~~~~~l~~~~~~ 73 (205)
.++.|.|..++++...++..+ .+++.+..
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~G--~l~y~l~a 65 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPEG--ALSYKLVA 65 (192)
T ss_pred CCCCCCEEEeccEEEEECCCC--CEEEEEEe
Confidence 357899999999999888653 34444443
No 19
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=50.32 E-value=41 Score=24.41 Aligned_cols=27 Identities=11% Similarity=0.101 Sum_probs=20.4
Q ss_pred EeEEEEEEEEeeCCCCeeeEEEcceEEE
Q 038323 67 ISTSMQFTLVTRNSNRRVDIIYDKLSAY 94 (205)
Q Consensus 67 l~~~~~~~l~~~NpN~~~~i~y~~~~~~ 94 (205)
-..++..++.+.||+. +.+..+...+.
T Consensus 98 ~g~~~~~~~~l~NPS~-~ti~lG~v~~~ 124 (125)
T PF12505_consen 98 DGINLNATVTLPNPSP-LTIDLGNVTLN 124 (125)
T ss_pred CcEEEEEEEEEcCCCe-EEEEeccEEEe
Confidence 4567788888999987 77777766554
No 20
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=48.58 E-value=30 Score=22.49 Aligned_cols=16 Identities=19% Similarity=0.661 Sum_probs=11.4
Q ss_pred HHHHheeeeEEEEecC
Q 038323 30 LAGVTALTLWLVYRPH 45 (205)
Q Consensus 30 ~lg~~~~i~~lvlrP~ 45 (205)
+.+.+..+.|++.+|+
T Consensus 13 vaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 13 VAAAAGAATWVIVQPR 28 (66)
T ss_pred HHhhhceeEEEEECCC
Confidence 3344566788889998
No 21
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.15 E-value=8.3 Score=29.36 Aligned_cols=31 Identities=23% Similarity=0.249 Sum_probs=22.8
Q ss_pred CccceehhhHHHHHHHHHHheeeeEEEEecC
Q 038323 15 SLGPTVGKIIAIILLLAGVTALTLWLVYRPH 45 (205)
Q Consensus 15 ~~~~~~~~~l~~~~~~lg~~~~i~~lvlrP~ 45 (205)
+...++..++++++++++.+++.+|....|.
T Consensus 4 k~~~~i~ii~viflai~~s~~~~~~~s~~P~ 34 (161)
T COG5353 4 KHLIIIIIILVIFLAIILSIALFFWKSMKPY 34 (161)
T ss_pred eEeeeehhHHHHHHHHHHHHHHHHhHhcCcc
Confidence 3455666666777777878888889888874
No 22
>KOG3927 consensus Na+/K+ ATPase, beta subunit [Inorganic ion transport and metabolism]
Probab=45.62 E-value=5.4 Score=33.99 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=31.4
Q ss_pred ccCCCCccceehhhHHHHHHHHHHheeeeEEE---EecCCCEEEEEeeEEeeecCC
Q 038323 10 ASKGSSLGPTVGKIIAIILLLAGVTALTLWLV---YRPHKPRFSVVAAAIYNINAS 62 (205)
Q Consensus 10 ~~~~~~~~~~~~~~l~~~~~~lg~~~~i~~lv---lrP~~P~~~V~~~~l~~~~~~ 62 (205)
.|..++|.+++...+++-+++.+++++++|.. +-|+.|++. ++..-.++.+.
T Consensus 38 GRT~~sW~~IllfYivFY~~la~lf~~~~~~~~~tidp~~P~~~-~~~~~PGl~~~ 92 (300)
T KOG3927|consen 38 GRTGSSWAKILLFYIVFYGVLAALFAGCMWFMLQTIDPKVPKYK-DSGANPGLSFR 92 (300)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-ccCCCCceeec
Confidence 35566777765555555555566666665643 679999998 55333344443
No 23
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=43.89 E-value=28 Score=26.53 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=32.3
Q ss_pred CCCCeeeEEEcceEEEEEECCEEeeCCCCCCCeeecCCCeeEEeE---EEEeeceeeecCHHHHHHhhcc
Q 038323 79 NSNRRVDIIYDKLSAYVSYRDQQITAPVYLPPLYHERKSTVALSP---VLGGAGQLVPVSAEVVNGLMMD 145 (205)
Q Consensus 79 NpN~~~~i~y~~~~~~v~Y~g~~lg~~~~lp~f~q~~~~t~~~~~---~l~~~~~~~~l~~~~~~~l~~d 145 (205)
--|..+.+.|...-=+++-.|+.+-..+.+ +.+ ..+.+ ...=+. -..++++.+.|+..
T Consensus 80 D~~~~v~V~Y~GiLPDLFREGQgVVa~G~~----~~~---~~f~A~~vLAKHdE--nY~P~ev~~~mk~~ 140 (153)
T COG2332 80 DGNKSVTVSYEGILPDLFREGQGVVAEGQL----QGG---GVFEAKEVLAKHDE--NYTPPEVAKAMKKN 140 (153)
T ss_pred cCCceEEEEEeccCchhhhcCCeEEEEEEe----cCC---CEEEeeehhhcCCc--ccCCHHHHHHhhhc
Confidence 555668888887766777777654223433 111 11211 222333 47778877777653
No 24
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=42.30 E-value=28 Score=21.97 Aligned_cols=13 Identities=23% Similarity=0.473 Sum_probs=8.7
Q ss_pred HheeeeEEEEecC
Q 038323 33 VTALTLWLVYRPH 45 (205)
Q Consensus 33 ~~~~i~~lvlrP~ 45 (205)
++++++|+.-||+
T Consensus 44 ~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 44 FIVVFVYLKTRPR 56 (56)
T ss_pred HHhheeEEeccCC
Confidence 4556667777875
No 25
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=42.00 E-value=99 Score=23.04 Aligned_cols=58 Identities=12% Similarity=0.055 Sum_probs=35.8
Q ss_pred eeEEEEec--CCCEEEEEeeEEeeecCCCCCeEeEEEEEEEEeeCCCCeeeEEEcceEEEEEECCEEee
Q 038323 37 TLWLVYRP--HKPRFSVVAAAIYNINASSPPFISTSMQFTLVTRNSNRRVDIIYDKLSAYVSYRDQQIT 103 (205)
Q Consensus 37 i~~lvlrP--~~P~~~V~~~~l~~~~~~~~~~l~~~~~~~l~~~NpN~~~~i~y~~~~~~v~Y~g~~lg 103 (205)
++|..+.. +.|..++.+.+- +. .+-.+.+..+++|-.+ ..+..=.+++.+..++...+
T Consensus 36 ~~~~~l~~~~~~~~~~~~~~~~--l~------~~~~~~v~g~V~N~g~-~~i~~c~i~~~l~~~~~~~~ 95 (149)
T PF09624_consen 36 FGYYWLDKYLKKIELTLTSQKR--LQ------YSESFYVDGTVTNTGK-FTIKKCKITVKLYNDKQVSG 95 (149)
T ss_pred HHHHHHhhhcCCceEEEeeeee--ee------eccEEEEEEEEEECCC-CEeeEEEEEEEEEeCCCccC
Confidence 33434444 556666655544 33 2335666688889986 77877778888887654433
No 26
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=41.85 E-value=1.9e+02 Score=23.41 Aligned_cols=38 Identities=13% Similarity=0.088 Sum_probs=31.2
Q ss_pred CeEeEEEEEEEEeeCCCCeeeEEEcc--eEEEEEECCEEee
Q 038323 65 PFISTSMQFTLVTRNSNRRVDIIYDK--LSAYVSYRDQQIT 103 (205)
Q Consensus 65 ~~l~~~~~~~l~~~NpN~~~~i~y~~--~~~~v~Y~g~~lg 103 (205)
..+...-+.++.++=||+ +.+.+.+ .+..++|.|+.+.
T Consensus 35 qklq~~~~~~v~v~RPdk-lr~~~~gd~~~~~~~yDGkt~T 74 (214)
T PF09865_consen 35 QKLQFSSSGTVTVQRPDK-LRIDRRGDGADREFYYDGKTFT 74 (214)
T ss_pred ceEEEEEEEEEEEeCCCe-EEEEEEcCCcceEEEECCCEEE
Confidence 568888889999999997 8998854 4778999998764
No 27
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=39.46 E-value=19 Score=27.72 Aligned_cols=16 Identities=38% Similarity=0.746 Sum_probs=10.4
Q ss_pred HHHHHheeeeEEEEec
Q 038323 29 LLAGVTALTLWLVYRP 44 (205)
Q Consensus 29 ~~lg~~~~i~~lvlrP 44 (205)
+++|+++.++|+.+||
T Consensus 13 ~l~~~~~y~~W~~~rp 28 (157)
T PF06092_consen 13 FLLACILYFLWLTLRP 28 (157)
T ss_pred HHHHHHHHhhhhccCC
Confidence 3344444778888888
No 28
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=39.22 E-value=10 Score=31.63 Aligned_cols=36 Identities=19% Similarity=0.436 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHheeeeEEEEecCCCEEEEEeeEEee
Q 038323 23 IIAIILLLAGVTALTLWLVYRPHKPRFSVVAAAIYN 58 (205)
Q Consensus 23 ~l~~~~~~lg~~~~i~~lvlrP~~P~~~V~~~~l~~ 58 (205)
.+...++++++.++++|...-+..|.+.+..+.+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~v~G 69 (269)
T COG1589 34 LIGLYLVLLLLVLVVLWVLILLSLPYFPIRKVSVSG 69 (269)
T ss_pred HHHHHHHHHHHHHHHHheehhhhcCCccceEEEEec
Confidence 333444445556667787788899999999999975
No 29
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=39.06 E-value=26 Score=26.82 Aligned_cols=24 Identities=29% Similarity=0.348 Sum_probs=16.2
Q ss_pred HHHHHHHHheeeeEEEEecCCCEE
Q 038323 26 IILLLAGVTALTLWLVYRPHKPRF 49 (205)
Q Consensus 26 ~~~~~lg~~~~i~~lvlrP~~P~~ 49 (205)
...++++++++++|+-.|++.-.|
T Consensus 59 Gg~ill~il~lvf~~c~r~kktdf 82 (154)
T PF04478_consen 59 GGPILLGILALVFIFCIRRKKTDF 82 (154)
T ss_pred cHHHHHHHHHhheeEEEecccCcc
Confidence 335556677777777788876554
No 30
>CHL00020 psbN photosystem II protein N
Probab=36.44 E-value=52 Score=19.55 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHheeeeEEEEec
Q 038323 23 IIAIILLLAGVTALTLWLVYRP 44 (205)
Q Consensus 23 ~l~~~~~~lg~~~~i~~lvlrP 44 (205)
.+++..+++++....+|..|-|
T Consensus 8 ~i~i~~ll~~~Tgy~iYtaFGp 29 (43)
T CHL00020 8 AIFISGLLVSFTGYALYTAFGQ 29 (43)
T ss_pred HHHHHHHHHHhhheeeeeccCC
Confidence 4455666788888888988876
No 31
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=36.19 E-value=14 Score=29.98 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=12.4
Q ss_pred ccccCCCCccceehhhHHHHH
Q 038323 8 NKASKGSSLGPTVGKIIAIIL 28 (205)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~~~~ 28 (205)
++|.++|+--++|-++|.+++
T Consensus 4 ~~r~KrRK~N~iLNiaI~IV~ 24 (217)
T PF07423_consen 4 QQRQKRRKTNKILNIAIGIVS 24 (217)
T ss_pred hHHHHhhhhhhhHHHHHHHHH
Confidence 456677777777765544333
No 32
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=35.75 E-value=27 Score=27.05 Aligned_cols=17 Identities=6% Similarity=-0.093 Sum_probs=11.8
Q ss_pred EEEcceEEEEEECCEEe
Q 038323 86 IIYDKLSAYVSYRDQQI 102 (205)
Q Consensus 86 i~y~~~~~~v~Y~g~~l 102 (205)
-+|=...+.+.+++...
T Consensus 86 ~ryLkv~i~l~~~d~~~ 102 (170)
T PRK05696 86 DRLVQIKVQLMVRGSDD 102 (170)
T ss_pred ceEEEEEEEEEECCHHH
Confidence 56777777777776543
No 33
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=35.16 E-value=13 Score=26.63 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=0.0
Q ss_pred ceehhhHHHHHHHHHHheee
Q 038323 18 PTVGKIIAIILLLAGVTALT 37 (205)
Q Consensus 18 ~~~~~~l~~~~~~lg~~~~i 37 (205)
+|+..+++.+++++.+++++
T Consensus 29 k~~~~i~~s~~~ll~lval~ 48 (106)
T PF11837_consen 29 KCLAAIFSSLLFLLSLVALI 48 (106)
T ss_dssp --------------------
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444
No 34
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=34.84 E-value=50 Score=26.08 Aligned_cols=28 Identities=14% Similarity=0.269 Sum_probs=16.2
Q ss_pred ceehhhHHHHHHHHHHheeeeEEEEecCCC
Q 038323 18 PTVGKIIAIILLLAGVTALTLWLVYRPHKP 47 (205)
Q Consensus 18 ~~~~~~l~~~~~~lg~~~~i~~lvlrP~~P 47 (205)
++.|.+++ .+++++++.+++.+++|+.|
T Consensus 4 K~aF~~Ll--a~~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 4 KWAFLILL--ALNLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHHH--HHHHHHHhheeeEEEccCCC
Confidence 34444443 33445556666667888866
No 35
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=34.83 E-value=54 Score=19.79 Aligned_cols=22 Identities=23% Similarity=0.585 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHheeeeEEEEec
Q 038323 23 IIAIILLLAGVTALTLWLVYRP 44 (205)
Q Consensus 23 ~l~~~~~~lg~~~~i~~lvlrP 44 (205)
.+.+..+++++....+|..|-|
T Consensus 11 ~i~i~~lL~~~TgyaiYtaFGp 32 (46)
T PRK13183 11 AITILAILLALTGFGIYTAFGP 32 (46)
T ss_pred HHHHHHHHHHHhhheeeeccCC
Confidence 4455666788888888988876
No 36
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=34.59 E-value=37 Score=20.23 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHheeeeEEEEec
Q 038323 23 IIAIILLLAGVTALTLWLVYRP 44 (205)
Q Consensus 23 ~l~~~~~~lg~~~~i~~lvlrP 44 (205)
.+.+..+++++....+|..|-|
T Consensus 8 ~i~i~~~lv~~Tgy~iYtaFGp 29 (43)
T PF02468_consen 8 AIFISCLLVSITGYAIYTAFGP 29 (43)
T ss_pred HHHHHHHHHHHHhhhhhheeCC
Confidence 4455566778888888988876
No 37
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=34.29 E-value=80 Score=22.21 Aligned_cols=24 Identities=4% Similarity=0.084 Sum_probs=10.7
Q ss_pred ehhhHHHHHHHHHHheeeeEE-EEe
Q 038323 20 VGKIIAIILLLAGVTALTLWL-VYR 43 (205)
Q Consensus 20 ~~~~l~~~~~~lg~~~~i~~l-vlr 43 (205)
+...++.++.++.++.+|.|+ ++|
T Consensus 64 ili~lls~v~IlVily~IyYFVILR 88 (101)
T PF06024_consen 64 ILISLLSFVCILVILYAIYYFVILR 88 (101)
T ss_pred hHHHHHHHHHHHHHHhhheEEEEEe
Confidence 333334444444344445555 454
No 38
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=32.67 E-value=2.1e+02 Score=21.22 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=35.8
Q ss_pred CeEeEEEEEEEEeeCCCCeeeEEEcceEEEEEEC--CEEeeCCCCCCCeeecCCCeeEE
Q 038323 65 PFISTSMQFTLVTRNSNRRVDIIYDKLSAYVSYR--DQQITAPVYLPPLYHERKSTVAL 121 (205)
Q Consensus 65 ~~l~~~~~~~l~~~NpN~~~~i~y~~~~~~v~Y~--g~~lg~~~~lp~f~q~~~~t~~~ 121 (205)
.....+|+++|++||.+.+-.+...+.+ ||+ |+.+- +--=.|.+.+|-.+..+
T Consensus 19 ~~~~~~Lt~tLSiRNtd~~~~i~i~~v~---Yydt~G~lvr-~yl~~Pi~L~Pl~t~~~ 73 (125)
T PF11322_consen 19 KHRPFNLTATLSIRNTDPTDPIYITSVD---YYDTDGKLVR-SYLDKPIYLKPLATTEF 73 (125)
T ss_pred CCceEeEEEEEEEEcCCCCCCEEEEEEE---EECCCCeEhH-HhcCCCeEcCCCceEEE
Confidence 3467789999999999887777775542 454 55554 33335777777766665
No 39
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=32.04 E-value=56 Score=22.79 Aligned_cols=61 Identities=7% Similarity=0.019 Sum_probs=34.2
Q ss_pred eEeEEEEEEEEeeCCCCee--eEEEcceEEEEEECCEEee-CCCCCCCeeecCCCeeEEeEEEE
Q 038323 66 FISTSMQFTLVTRNSNRRV--DIIYDKLSAYVSYRDQQIT-APVYLPPLYHERKSTVALSPVLG 126 (205)
Q Consensus 66 ~l~~~~~~~l~~~NpN~~~--~i~y~~~~~~v~Y~g~~lg-~~~~lp~f~q~~~~t~~~~~~l~ 126 (205)
.+.-.+++.+++.||.... .+...=.-..++|.|.... ..........+|+++..+.+.+.
T Consensus 12 ~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~ 75 (107)
T PF00927_consen 12 VVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTIT 75 (107)
T ss_dssp BTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-
T ss_pred cCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEE
Confidence 4556888999999996521 1222223445678887531 01244556777787777766664
No 40
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=32.04 E-value=17 Score=24.79 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=15.7
Q ss_pred ccccccCCCCccceehhhHHHHHHHH
Q 038323 6 DKNKASKGSSLGPTVGKIIAIILLLA 31 (205)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~~~~~~l 31 (205)
.|-|++++++++.+++..+++.+.++
T Consensus 5 ~~lk~~~~kkFl~~l~~vfiia~~Vv 30 (85)
T PF10749_consen 5 KKLKTKEGKKFLLALAIVFIIAATVV 30 (85)
T ss_pred HHhcChhhhHHHHHHHHHHHHHHHHH
Confidence 35677777777777665544444333
No 41
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=31.94 E-value=14 Score=26.93 Aligned_cols=8 Identities=13% Similarity=0.584 Sum_probs=5.5
Q ss_pred eEEEEecC
Q 038323 38 LWLVYRPH 45 (205)
Q Consensus 38 ~~lvlrP~ 45 (205)
+|+.+||+
T Consensus 16 ~yf~iRPQ 23 (113)
T PRK06531 16 IFFMQRQQ 23 (113)
T ss_pred HHheechH
Confidence 45568995
No 42
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=31.59 E-value=57 Score=26.52 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=10.7
Q ss_pred HHHHHHheeeeEEEEecCCCEE
Q 038323 28 LLLAGVTALTLWLVYRPHKPRF 49 (205)
Q Consensus 28 ~~~lg~~~~i~~lvlrP~~P~~ 49 (205)
++++|..++.++-++||+...-
T Consensus 169 v~l~gGGa~yYfK~~K~K~~~~ 190 (218)
T PF14283_consen 169 VALIGGGAYYYFKFYKPKQEEK 190 (218)
T ss_pred HHHhhcceEEEEEEeccccccc
Confidence 3333333333333678876543
No 43
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=31.33 E-value=7.4 Score=20.38 Aligned_cols=19 Identities=11% Similarity=0.305 Sum_probs=10.6
Q ss_pred HHHHHHHheeeeEEEEecC
Q 038323 27 ILLLAGVTALTLWLVYRPH 45 (205)
Q Consensus 27 ~~~~lg~~~~i~~lvlrP~ 45 (205)
.++.+++++..+|..++|+
T Consensus 5 ~~v~~~L~~YL~~aLl~PE 23 (25)
T PF09604_consen 5 GIVAVALFVYLFYALLRPE 23 (25)
T ss_pred HHHHHHHHHHHHHHHhCcc
Confidence 3444555555555557775
No 44
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=30.03 E-value=1.2e+02 Score=23.80 Aligned_cols=12 Identities=25% Similarity=0.672 Sum_probs=6.5
Q ss_pred EecCCCEEEEEe
Q 038323 42 YRPHKPRFSVVA 53 (205)
Q Consensus 42 lrP~~P~~~V~~ 53 (205)
+.|..|..+++.
T Consensus 32 ~~~~~~~~~i~v 43 (175)
T PF04573_consen 32 FHPPSPSVSISV 43 (175)
T ss_pred ccCCCCceEEEE
Confidence 566666554443
No 45
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=29.80 E-value=1.9e+02 Score=24.22 Aligned_cols=18 Identities=39% Similarity=0.433 Sum_probs=11.9
Q ss_pred eEeEEEEEEEEeeCCCCe
Q 038323 66 FISTSMQFTLVTRNSNRR 83 (205)
Q Consensus 66 ~l~~~~~~~l~~~NpN~~ 83 (205)
.+..+=++++.++|+|..
T Consensus 83 ~i~s~~~v~~~~r~~~g~ 100 (264)
T PF04790_consen 83 VIQSSRNVTLNARNENGS 100 (264)
T ss_pred EEEecCceEEEEecCCCc
Confidence 344455677778888775
No 46
>PF05966 Chordopox_A33R: Chordopoxvirus A33R protein; InterPro: IPR009238 This family consists of several Chordopoxvirus A33R proteins. A33R plays a role in promoting Ab-resistant cell-to-cell spread of virus [] and interacts with A36R to incorporate the protein into the outer membrane of intracellular enveloped virions (IEV) [].; PDB: 3K7B_A.
Probab=28.00 E-value=20 Score=28.48 Aligned_cols=85 Identities=19% Similarity=0.185 Sum_probs=10.4
Q ss_pred CCCCccceehhhHHHHHHHHHHheeeeEEEEecCCCEEEEEeeEEee-ecCCCCCeEeEEEEEEEEeeCCCCeeeEEEcc
Q 038323 12 KGSSLGPTVGKIIAIILLLAGVTALTLWLVYRPHKPRFSVVAAAIYN-INASSPPFISTSMQFTLVTRNSNRRVDIIYDK 90 (205)
Q Consensus 12 ~~~~~~~~~~~~l~~~~~~lg~~~~i~~lvlrP~~P~~~V~~~~l~~-~~~~~~~~l~~~~~~~l~~~NpN~~~~i~y~~ 90 (205)
++++|...++.+.++ +-++.++++.++|+++=..=+...+++.... ++-. +.....-+..-...|..= =+|.|++
T Consensus 37 kk~r~i~l~lRI~ii-~SilSL~~i~~~Lalq~n~C~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~tC-~GI~~~n 112 (190)
T PF05966_consen 37 KKRRCISLFLRISII-ISILSLMAITVTLALQLNKCKSISESAHTDYSVNTY--SSITPDADYASSVTNSTC-DGIVYDN 112 (190)
T ss_dssp ---------------------------------------------------------------------S---SSEEETT
T ss_pred HhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHhhcccchhhccc--cccccccccccccccCcC-CCcccCC
Confidence 344555555544333 3334455555666665443333333222211 1111 112222223333334432 4778877
Q ss_pred eEEEEEECCE
Q 038323 91 LSAYVSYRDQ 100 (205)
Q Consensus 91 ~~~~v~Y~g~ 100 (205)
--..+-+...
T Consensus 113 ~Cl~~~~~p~ 122 (190)
T PF05966_consen 113 KCLTLNYEPK 122 (190)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEecCCCC
Confidence 6555554433
No 47
>PHA03164 hypothetical protein; Provisional
Probab=27.96 E-value=29 Score=23.31 Aligned_cols=16 Identities=19% Similarity=0.061 Sum_probs=7.3
Q ss_pred ccccCCCCccceehhh
Q 038323 8 NKASKGSSLGPTVGKI 23 (205)
Q Consensus 8 ~~~~~~~~~~~~~~~~ 23 (205)
++|||.-.++...|.+
T Consensus 52 nnrRktftFlvLtgLa 67 (88)
T PHA03164 52 NNRRKTFTFLVLTGLA 67 (88)
T ss_pred HhhhheeehHHHHHHH
Confidence 4455554544444433
No 48
>PF07116 DUF1372: Protein of unknown function (DUF1372); InterPro: IPR010779 This entry is represented by Streptococcus phage Sfi11, Gp93. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Streptococcus bacteriophage sequences and related proteins from Streptococcus species. Members of this family are typically around 100 residues in length and their function is unknown.
Probab=27.10 E-value=33 Score=24.35 Aligned_cols=12 Identities=50% Similarity=0.343 Sum_probs=8.8
Q ss_pred CcccCccccccCC
Q 038323 1 MTTGNDKNKASKG 13 (205)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (205)
|+|-| |+|+++-
T Consensus 1 m~~l~-~~~~~~~ 12 (104)
T PF07116_consen 1 MTTLN-KEKRDNL 12 (104)
T ss_pred Ccchh-HhhhhhH
Confidence 77778 7777754
No 49
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=26.84 E-value=25 Score=27.71 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=9.1
Q ss_pred EEcceEEEEEECCEE
Q 038323 87 IYDKLSAYVSYRDQQ 101 (205)
Q Consensus 87 ~y~~~~~~v~Y~g~~ 101 (205)
+|=...+.+.+.+..
T Consensus 103 ryLkv~i~Le~~~~~ 117 (182)
T PRK08455 103 RYLKTSISLELSNEK 117 (182)
T ss_pred eEEEEEEEEEECCHh
Confidence 566666666665543
No 50
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=25.87 E-value=11 Score=20.39 Aligned_cols=19 Identities=16% Similarity=0.245 Sum_probs=10.8
Q ss_pred HHHHHHHheeeeEEEEecC
Q 038323 27 ILLLAGVTALTLWLVYRPH 45 (205)
Q Consensus 27 ~~~~lg~~~~i~~lvlrP~ 45 (205)
.++.+|+.+..++..+||.
T Consensus 9 ~~va~~L~vYL~~ALlrPE 27 (29)
T PRK14759 9 GAVSLGLLIYLTYALLRPE 27 (29)
T ss_pred HHHHHHHHHHHHHHHhCcc
Confidence 3444555555555567885
No 51
>PRK10927 essential cell division protein FtsN; Provisional
Probab=25.73 E-value=1.1e+02 Score=26.30 Aligned_cols=11 Identities=9% Similarity=0.021 Sum_probs=6.2
Q ss_pred HHHHHhhcccc
Q 038323 137 EVVNGLMMDES 147 (205)
Q Consensus 137 ~~~~~l~~d~~ 147 (205)
+.++.|.+.++
T Consensus 259 ~nAE~LrAkLa 269 (319)
T PRK10927 259 EQAETVRAQLA 269 (319)
T ss_pred HHHHHHHHHHH
Confidence 34566666654
No 52
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=25.24 E-value=5.1e+02 Score=23.37 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=14.2
Q ss_pred CeeecCCCeeEEeEEEEee
Q 038323 110 PLYHERKSTVALSPVLGGA 128 (205)
Q Consensus 110 ~f~q~~~~t~~~~~~l~~~ 128 (205)
++..++.++..+.+.+..+
T Consensus 382 ~i~v~~g~~~~~~v~v~~~ 400 (434)
T TIGR02745 382 PIHVKAGEKVKLPVFLRTP 400 (434)
T ss_pred eEEECCCCEEEEEEEEEec
Confidence 6888888888777776544
No 53
>PF06129 Chordopox_G3: Chordopoxvirus G3 protein; InterPro: IPR010367 This family consists of several poxvirus specific G3 proteins. The function of this family is unknown.
Probab=24.49 E-value=54 Score=23.65 Aligned_cols=67 Identities=19% Similarity=0.302 Sum_probs=29.1
Q ss_pred HheeeeEEEEecC-CCEEEEEeeEEeeecC-CCCCeEeEEEEEEEEeeCCCC----eeeEEEcce--EEEEEECCE
Q 038323 33 VTALTLWLVYRPH-KPRFSVVAAAIYNINA-SSPPFISTSMQFTLVTRNSNR----RVDIIYDKL--SAYVSYRDQ 100 (205)
Q Consensus 33 ~~~~i~~lvlrP~-~P~~~V~~~~l~~~~~-~~~~~l~~~~~~~l~~~NpN~----~~~i~y~~~--~~~v~Y~g~ 100 (205)
.++++.|+-+.|- .-+..|....-++.-. ..+..+.. .--++-+.||+. .+.++|++. .+.+.|+|.
T Consensus 12 Fl~~~Y~~~y~PTNK~ql~v~~~~~~~~i~k~~d~~~~~-~~~t~lF~~~~~~~~~~v~l~Yds~~~~Vtv~~~~~ 86 (109)
T PF06129_consen 12 FLVLCYFFNYYPTNKMQLAVRELNYENAIIKQQDDNLPK-LLNTVLFLNPDKPVSSQVILYYDSRSGTVTVAYKNK 86 (109)
T ss_pred HHHHHHHHhhccchHHHHhhcccchhhHHHhcccccCcc-ceeeEEecCCCcccccceEEEEccCCCeEEEEECCc
Confidence 3444455567773 3344444433332111 11112222 333445567763 345555543 345555543
No 54
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=24.47 E-value=6.1 Score=20.89 Aligned_cols=18 Identities=22% Similarity=0.523 Sum_probs=9.7
Q ss_pred HHHHHHheeeeEEEEecC
Q 038323 28 LLLAGVTALTLWLVYRPH 45 (205)
Q Consensus 28 ~~~lg~~~~i~~lvlrP~ 45 (205)
++.+++++..+|..+||+
T Consensus 5 ~l~~~L~~YL~~aLl~PE 22 (26)
T TIGR02115 5 VLAVGLFIYLFYALLRPE 22 (26)
T ss_pred HHHHHHHHHHHHHHhCHH
Confidence 344445555555556775
No 55
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=24.25 E-value=2.8e+02 Score=19.95 Aligned_cols=65 Identities=9% Similarity=0.079 Sum_probs=34.5
Q ss_pred EeeCCCCCCCeeecCCCeeE-EeEEEEeeceeeecCHHHHHHhhccc-ccCeEEEEEEEEEEEEEEEcEEEEeeee
Q 038323 101 QITAPVYLPPLYHERKSTVA-LSPVLGGAGQLVPVSAEVVNGLMMDE-SYGVVSFRVVLLGRLRWKAGAIKTARYG 174 (205)
Q Consensus 101 ~lg~~~~lp~f~q~~~~t~~-~~~~l~~~~~~~~l~~~~~~~l~~d~-~~G~v~~~v~~~~~v~~~~g~~~~~~~~ 174 (205)
++| ...+|+....+..+.. ....+.. .+.+...++..+. ....+.+.++.+ ...++|.++.....
T Consensus 2 ~f~-~~~lP~~~~~~~~~~~~~~~~l~i------~d~~~f~~f~~~~~~~~~~~l~l~g~--~~~~~g~l~~~~i~ 68 (125)
T PF12505_consen 2 PFA-TLDLPQIKIKGNGTISIIDQTLTI------TDQDAFTQFVTALLFNEEVTLTLRGK--TDTHLGGLPFSGIP 68 (125)
T ss_pred ceE-EEECCCEEecCCceEEEeeeeEEe------cCHHHHHHHHHHHHhCCcEEEEEEEe--eeEEEccEEEEEEe
Confidence 467 6788998882222222 2222221 2233345666664 455566666654 46778887554333
No 56
>PF10969 DUF2771: Protein of unknown function (DUF2771); InterPro: IPR024495 This bacterial family of proteins has no known function.
Probab=24.24 E-value=38 Score=26.14 Aligned_cols=9 Identities=22% Similarity=0.696 Sum_probs=6.3
Q ss_pred cCCCEEEEE
Q 038323 44 PHKPRFSVV 52 (205)
Q Consensus 44 P~~P~~~V~ 52 (205)
|+.|++++.
T Consensus 32 p~~p~It~~ 40 (161)
T PF10969_consen 32 PQDPEITAY 40 (161)
T ss_pred CCCcEEEEE
Confidence 577877765
No 57
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=24.11 E-value=2.4e+02 Score=19.11 Aligned_cols=70 Identities=14% Similarity=0.164 Sum_probs=39.2
Q ss_pred CEEEEEeeEEeeecCCCCCeEeEEEEEEEEeeCCCCeeeEEEcceEEEEEE-CCEEeeCCCCCCCeeecCCCeeEEeEEE
Q 038323 47 PRFSVVAAAIYNINASSPPFISTSMQFTLVTRNSNRRVDIIYDKLSAYVSY-RDQQITAPVYLPPLYHERKSTVALSPVL 125 (205)
Q Consensus 47 P~~~V~~~~l~~~~~~~~~~l~~~~~~~l~~~NpN~~~~i~y~~~~~~v~Y-~g~~lg~~~~lp~f~q~~~~t~~~~~~l 125 (205)
|.++++--.+.--++ ........+++++|... ...+|.= ..-. .+..+- ..-++....|+.+..+.+.+
T Consensus 2 P~l~v~P~~ldFG~v----~~g~~~~~~v~l~N~s~-~p~~f~v---~~~~~~~~~~~--v~~~~g~l~PG~~~~~~V~~ 71 (102)
T PF14874_consen 2 PTLEVSPKELDFGNV----FVGQTYSRTVTLTNTSS-IPARFRV---RQPESLSSFFS--VEPPSGFLAPGESVELEVTF 71 (102)
T ss_pred CEEEEeCCEEEeeEE----ccCCEEEEEEEEEECCC-CCEEEEE---EeCCcCCCCEE--EECCCCEECCCCEEEEEEEE
Confidence 556555544432111 24456678888899876 5666641 1111 112222 22345667788888888888
Q ss_pred E
Q 038323 126 G 126 (205)
Q Consensus 126 ~ 126 (205)
.
T Consensus 72 ~ 72 (102)
T PF14874_consen 72 S 72 (102)
T ss_pred E
Confidence 7
No 58
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=23.80 E-value=1.6e+02 Score=22.61 Aligned_cols=14 Identities=7% Similarity=0.124 Sum_probs=10.1
Q ss_pred eecCHHHHHHhhcc
Q 038323 132 VPVSAEVVNGLMMD 145 (205)
Q Consensus 132 ~~l~~~~~~~l~~d 145 (205)
-+.++++.+.|++.
T Consensus 126 ~YmP~Ev~~al~~~ 139 (155)
T PRK13159 126 TYMPKELKDAMAEG 139 (155)
T ss_pred cCCCHHHHHHHHhc
Confidence 57888887777654
No 59
>PF05170 AsmA: AsmA family; InterPro: IPR007844 The AsmA protein is involved in the assembly of outer membrane proteins in Escherichia coli []. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant []. AsmA may have a role in LPS biogenesis [].
Probab=23.65 E-value=4.9e+02 Score=24.01 Aligned_cols=68 Identities=22% Similarity=0.195 Sum_probs=34.6
Q ss_pred EEEcceEEEEEECCEEeeCCCCCCCeeecCCCeeEEeEEEEeeceeeecCHHHHHHhhcccccCeEEEEEEEEEEE
Q 038323 86 IIYDKLSAYVSYRDQQITAPVYLPPLYHERKSTVALSPVLGGAGQLVPVSAEVVNGLMMDESYGVVSFRVVLLGRL 161 (205)
Q Consensus 86 i~y~~~~~~v~Y~g~~lg~~~~lp~f~q~~~~t~~~~~~l~~~~~~~~l~~~~~~~l~~d~~~G~v~~~v~~~~~v 161 (205)
+..+++++.+ |+|..=| .+.+.. ......+++....++ +++.+-.......+.-.|..++++.++++.
T Consensus 468 l~l~~l~~~l-~~G~~~~-~~~ld~----~~~~~~~~~~~~~~~--v~l~~Ll~~~~~~~~l~G~~~~~~~l~g~G 535 (604)
T PF05170_consen 468 LTLDPLSAKL-YGGSLSG-SASLDA----RQDPPQYSLNLNLRG--VQLQPLLQDLALPDPLSGTGDLNLDLTGQG 535 (604)
T ss_pred EEEeeeeEec-CCcEEEE-EEEEec----cCCCccEEEeeeeCC--cchHHHHhhhccccCceEEEEEEEEEEeCC
Confidence 3444555554 6666544 333321 223345566666776 676553222222234567777776666654
No 60
>PF14828 Amnionless: Amnionless
Probab=23.20 E-value=52 Score=29.64 Aligned_cols=30 Identities=27% Similarity=0.280 Sum_probs=16.8
Q ss_pred ehhhHHHHHHHHHHheeeeEEEEecCCCEE
Q 038323 20 VGKIIAIILLLAGVTALTLWLVYRPHKPRF 49 (205)
Q Consensus 20 ~~~~l~~~~~~lg~~~~i~~lvlrP~~P~~ 49 (205)
+.+++++.++++++++.++|+.+.|+.|.+
T Consensus 340 v~~~vl~~Lllv~ll~~~~ll~~~~~~~~l 369 (437)
T PF14828_consen 340 VVGIVLGCLLLVALLFGVILLYRLPRNPSL 369 (437)
T ss_pred eeeehHHHHHHHHHHHHhheEEeccccccc
Confidence 334444445555566666666665766655
No 61
>PRK10263 DNA translocase FtsK; Provisional
Probab=22.76 E-value=24 Score=36.02 Aligned_cols=46 Identities=24% Similarity=0.359 Sum_probs=28.7
Q ss_pred ccccccCCCCccceehhhHHHHHHHHHHheeeeEEEEecCCCEEEE
Q 038323 6 DKNKASKGSSLGPTVGKIIAIILLLAGVTALTLWLVYRPHKPRFSV 51 (205)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~~~~~~lg~~~~i~~lvlrP~~P~~~V 51 (205)
||+-...+....+.+.-++.++++++++.+++.++.|.|.+|.++-
T Consensus 8 ~~~~~~~~~~~~rrL~E~~gIlLlllAlfL~lALiSYsPsDPSwS~ 53 (1355)
T PRK10263 8 DKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQ 53 (1355)
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhCCccCCcccc
Confidence 4553344445555555555555556666666666678999998864
No 62
>TIGR03726 strep_RK_lipo putative cross-wall-targeting lipoprotein signal. The YSIRK signal domain targets proteins to the cross-wall, or septum, of dividing Gram-positive bacterial. Lipoprotein signal motifs direct a characteristic N-terminal cleavage and lipid modification for membrane anchoring. This Streptococcal-only signal peptide variant appears to be a hybrid between the two, likely directing protein targeting of nascent surface lipoproteins to the cross-wall. Nearly all members of this family have the characteristic LPXTG cell wall anchor signal at the C-terminus.
Probab=21.94 E-value=34 Score=19.24 Aligned_cols=21 Identities=19% Similarity=-0.108 Sum_probs=12.6
Q ss_pred CCCccceehhhHHHHHHHHHH
Q 038323 13 GSSLGPTVGKIIAIILLLAGV 33 (205)
Q Consensus 13 ~~~~~~~~~~~l~~~~~~lg~ 33 (205)
+++-.+.+|.+++..++++..
T Consensus 5 KsK~~~tLCGa~Lgt~~~~~~ 25 (34)
T TIGR03726 5 KSKKYRTLCGAALGTAVTASV 25 (34)
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 344456788877766554433
No 63
>COG0316 sufA Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.50 E-value=55 Score=23.60 Aligned_cols=16 Identities=13% Similarity=0.167 Sum_probs=10.8
Q ss_pred EEEEEEEeeCCCCeee
Q 038323 70 SMQFTLVTRNSNRRVD 85 (205)
Q Consensus 70 ~~~~~l~~~NpN~~~~ 85 (205)
.+.-.++++|||.+..
T Consensus 86 ~~g~~F~~~NPNA~~~ 101 (110)
T COG0316 86 LLGSGFTFKNPNAKSS 101 (110)
T ss_pred CcCCceEEECCCCCcc
Confidence 3444588899997543
No 64
>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []. Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.
Probab=21.24 E-value=32 Score=25.05 Aligned_cols=9 Identities=33% Similarity=0.800 Sum_probs=0.0
Q ss_pred eeeeEEEEe
Q 038323 35 ALTLWLVYR 43 (205)
Q Consensus 35 ~~i~~lvlr 43 (205)
++.+|++|.
T Consensus 49 a~TaYfv~~ 57 (114)
T PF09307_consen 49 AVTAYFVFQ 57 (114)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 455666765
No 65
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=20.68 E-value=8.7 Score=26.19 Aligned_cols=12 Identities=17% Similarity=-0.258 Sum_probs=1.2
Q ss_pred cCCCCccceehh
Q 038323 11 SKGSSLGPTVGK 22 (205)
Q Consensus 11 ~~~~~~~~~~~~ 22 (205)
+++++++.++..
T Consensus 62 rkKrrwlwLlik 73 (81)
T PF14812_consen 62 RKKRRWLWLLIK 73 (81)
T ss_dssp ---------TTT
T ss_pred cccchhHHHHHH
Confidence 344444444433
No 66
>PF14927 Neurensin: Neurensin
Probab=20.53 E-value=50 Score=24.95 Aligned_cols=28 Identities=39% Similarity=0.551 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHHheeeeEEEEecCCCEE
Q 038323 21 GKIIAIILLLAGVTALTLWLVYRPHKPRF 49 (205)
Q Consensus 21 ~~~l~~~~~~lg~~~~i~~lvlrP~~P~~ 49 (205)
+.++-++++++|++++++-.. -|+.++.
T Consensus 47 ~~i~g~l~Ll~Gi~~l~vgY~-vP~~~e~ 74 (140)
T PF14927_consen 47 GFISGLLLLLLGIVALTVGYL-VPPKIEV 74 (140)
T ss_pred HHHHHHHHHHHHHHHHHhhcc-cCCccee
Confidence 445566667777776653323 3444443
No 67
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=20.32 E-value=2.8e+02 Score=23.91 Aligned_cols=23 Identities=22% Similarity=0.595 Sum_probs=9.9
Q ss_pred eeeEEEE-ecCCCEEEEEeeEEeee
Q 038323 36 LTLWLVY-RPHKPRFSVVAAAIYNI 59 (205)
Q Consensus 36 ~i~~lvl-rP~~P~~~V~~~~l~~~ 59 (205)
+..|..+ .|. |.+.+..+.-..+
T Consensus 23 ~~~~~~~~~~~-~~v~~~~v~~~~~ 46 (370)
T PRK11578 23 ITLWRILNAPV-PTYQTLIVRPGDL 46 (370)
T ss_pred hhheeecCCCC-CceEEEEEEeeee
Confidence 3444433 343 4455544444433
No 68
>PHA02973 hypothetical protein; Provisional
Probab=20.24 E-value=78 Score=22.44 Aligned_cols=55 Identities=11% Similarity=0.161 Sum_probs=28.7
Q ss_pred HheeeeEEEEec-CCCEEEEEeeEEeeecCCCCCeEeEEEEEEEEeeCCCCeeeEEEcceEEEEEEC
Q 038323 33 VTALTLWLVYRP-HKPRFSVVAAAIYNINASSPPFISTSMQFTLVTRNSNRRVDIIYDKLSAYVSYR 98 (205)
Q Consensus 33 ~~~~i~~lvlrP-~~P~~~V~~~~l~~~~~~~~~~l~~~~~~~l~~~NpN~~~~i~y~~~~~~v~Y~ 98 (205)
.+++..|+-+.| ..-+..|....-++. .++ ....-++-..||++ |.+..+.++|+
T Consensus 11 FL~l~Y~fn~~pTNKmq~aV~~l~~e~~--~d~----p~~l~t~lF~~~~~-----~~~~~v~~yyd 66 (102)
T PHA02973 11 FLLLCYFFNFKRTNKMDIGINPIKKIPW--SDN----DHIFVSSLFHNKDK-----YLTGPMKLNYD 66 (102)
T ss_pred HHHHHHHhhccccchhhhhhhhcccccc--cCC----CceeEEEEecCCCC-----ccccceEEEEc
Confidence 334445555666 345666666555542 221 23445566778876 33444555554
No 69
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=20.14 E-value=35 Score=19.38 Aligned_cols=7 Identities=14% Similarity=0.126 Sum_probs=2.7
Q ss_pred CCCccce
Q 038323 13 GSSLGPT 19 (205)
Q Consensus 13 ~~~~~~~ 19 (205)
++.+-+.
T Consensus 6 KS~feki 12 (35)
T PF13253_consen 6 KSTFEKI 12 (35)
T ss_pred ccHHHHH
Confidence 3334433
Done!