Query 038323
Match_columns 205
No_of_seqs 111 out of 819
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 16:50:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038323.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038323hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.4 4E-06 1.4E-10 64.5 11.8 77 45-128 43-120 (174)
2 1xo8_A AT1G01470; structural g 98.2 1.2E-06 4.1E-11 66.1 4.3 77 45-128 20-97 (151)
3 3but_A Uncharacterized protein 98.1 3.8E-05 1.3E-09 56.8 10.9 88 67-161 16-104 (136)
4 3ixz_B Potassium-transporting 27.5 7.3 0.00025 31.9 -1.5 27 25-51 46-75 (290)
5 3kdp_B Sodium/potassium-transp 25.8 5.6 0.00019 32.5 -2.5 48 14-62 13-63 (286)
6 2kj1_A BM2 protein; cytoplasmi 22.2 19 0.00066 22.9 0.1 14 69-82 8-21 (89)
7 2knc_B Integrin beta-3; transm 21.7 19 0.00066 23.3 0.0 17 23-39 16-32 (79)
8 1nrp_R Receptor based peptide 19.5 20 0.0007 17.5 -0.2 11 75-85 6-16 (26)
9 2l0d_A Cell surface protein; s 19.3 2.3E+02 0.0078 19.4 10.1 54 47-110 3-56 (114)
10 1nro_R Receptor based peptide 19.0 29 0.00099 17.1 0.3 11 75-85 6-16 (27)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.41 E-value=4e-06 Score=64.54 Aligned_cols=77 Identities=14% Similarity=0.097 Sum_probs=67.6
Q ss_pred CCCEEEEEeeEEeeecCCCCCeEeEEEEEEEEeeCCCCeeeEEEcceEEEEEECCEEeeCCCCCC-CeeecCCCeeEEeE
Q 038323 45 HKPRFSVVAAAIYNINASSPPFISTSMQFTLVTRNSNRRVDIIYDKLSAYVSYRDQQITAPVYLP-PLYHERKSTVALSP 123 (205)
Q Consensus 45 ~~P~~~V~~~~l~~~~~~~~~~l~~~~~~~l~~~NpN~~~~i~y~~~~~~v~Y~g~~lg~~~~lp-~f~q~~~~t~~~~~ 123 (205)
+.|++++.++++.+++. ...++.+.++++|||. +++.+..++..++-.|..++ ++..| ++..++.+++.+.+
T Consensus 43 ~~PeV~v~~v~~~~~~l-----~~~~~~l~LrV~NPN~-~pLpi~gi~Y~L~vnG~~la-sG~s~~~~tIpa~g~~~v~V 115 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTR-----DGVDYHAKVSVKNPYS-QSIPICQISYILKSATRTIA-SGTIPDPGSLVGSGTTVLDV 115 (174)
T ss_dssp CCCEEEEEEEEEEEECS-----SSEEEEEEEEEEECSS-SCCBCCSEEEEEEESSSCEE-EEEESCCCBCCSSEEEEEEE
T ss_pred CCCEEEEEEeEEecccc-----ceEEEEEEEEEECCCC-CCccccceEEEEEECCEEEE-EEecCCCceECCCCcEEEEE
Confidence 68999999999988876 4578999999999998 99999999999999999999 66665 58999999999988
Q ss_pred EEEee
Q 038323 124 VLGGA 128 (205)
Q Consensus 124 ~l~~~ 128 (205)
.+...
T Consensus 116 pv~v~ 120 (174)
T 1yyc_A 116 PVKVA 120 (174)
T ss_dssp EEEES
T ss_pred EEEEE
Confidence 87654
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.19 E-value=1.2e-06 Score=66.07 Aligned_cols=77 Identities=19% Similarity=0.106 Sum_probs=66.0
Q ss_pred CCCEEEEEeeEEeeecCCCCCeEeEEEEEEEEeeCCCCeeeEEEcceEEEEEECCEEeeCCCCCC-CeeecCCCeeEEeE
Q 038323 45 HKPRFSVVAAAIYNINASSPPFISTSMQFTLVTRNSNRRVDIIYDKLSAYVSYRDQQITAPVYLP-PLYHERKSTVALSP 123 (205)
Q Consensus 45 ~~P~~~V~~~~l~~~~~~~~~~l~~~~~~~l~~~NpN~~~~i~y~~~~~~v~Y~g~~lg~~~~lp-~f~q~~~~t~~~~~ 123 (205)
+.|++++.++++.+++. ...++.+.++++|||. +++.+..++..++-.|..++ ++..+ ++..++.+++.+.+
T Consensus 20 ~~P~v~v~~v~~~~~~~-----~~~~~~~~l~V~NPN~-~~lpi~gi~y~l~vng~~la-sG~~~~~~~ipa~g~~~v~v 92 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNR-----DSVEYLAKVSVTNPYS-HSIPICEISFTFHSAGREIG-KGKIPDPGSLKAKDMTALDI 92 (151)
T ss_dssp CSCCCBCSEEEECCCTT-----TEECEEEEEEEECSSS-SCCCCEEEEEEEESSSSCEE-EEEEEECCCCSSSSEEEEEE
T ss_pred CCCEEEEEEeEEeccCc-----ceeEEEEEEEEECCCC-CCcccccEEEEEEECCEEEE-EEecCCCcEECCCCcEEEEE
Confidence 67999999999987765 4568999999999998 99999999999999999999 66664 58899999998877
Q ss_pred EEEee
Q 038323 124 VLGGA 128 (205)
Q Consensus 124 ~l~~~ 128 (205)
.+...
T Consensus 93 pv~v~ 97 (151)
T 1xo8_A 93 PVVVP 97 (151)
T ss_dssp CCCEE
T ss_pred EEEEE
Confidence 76544
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=98.11 E-value=3.8e-05 Score=56.75 Aligned_cols=88 Identities=15% Similarity=0.098 Sum_probs=67.5
Q ss_pred EeEEEEEEEEeeCCCCeeeEEEcceEEEEEECCEEeeCCCC-CCCeeecCCCeeEEeEEEEeeceeeecCHHHHHHhhcc
Q 038323 67 ISTSMQFTLVTRNSNRRVDIIYDKLSAYVSYRDQQITAPVY-LPPLYHERKSTVALSPVLGGAGQLVPVSAEVVNGLMMD 145 (205)
Q Consensus 67 l~~~~~~~l~~~NpN~~~~i~y~~~~~~v~Y~g~~lg~~~~-lp~f~q~~~~t~~~~~~l~~~~~~~~l~~~~~~~l~~d 145 (205)
-...+.+.|+++|||. +++.++.++..++..|..+| ++. ...+..++.+++.+.+.+..+. ..+.+...+.+++.
T Consensus 16 ~~t~~~~~l~V~NPN~-~~l~i~gl~y~v~lng~~la-~G~s~~~~~I~~~g~~~v~v~~~i~~--~~l~~~~~~hi~ng 91 (136)
T 3but_A 16 SQTEIVALAKVRNEDV-VPIVVSGYHYTIEMNGVKVA-DGYENSPVTVKPASATTLKFSLRLNN--SFLREWWVTHIANG 91 (136)
T ss_dssp SEEEEEEEEEEECCSS-SCEEEEEEEEEEEETTEEEE-EEEECCCEEECTTCEEEEEEEEEEEH--HHHTTHHHHHHHTT
T ss_pred cEEEEEEEEEEeCCCC-cceeeeceEEEEEECCEEEE-eeeecCceEECCCCcEEEEEEEEEch--HHhHHHHHHHhhcC
Confidence 5678999999999997 99999999999999999999 554 6789999999999999988887 56666555555432
Q ss_pred cccCeEEEEEEEEEEE
Q 038323 146 ESYGVVSFRVVLLGRL 161 (205)
Q Consensus 146 ~~~G~v~~~v~~~~~v 161 (205)
. .-.++++++..+
T Consensus 92 -e--~s~l~i~~~~~l 104 (136)
T 3but_A 92 -E--KTKIRVAIKPTI 104 (136)
T ss_dssp -S--EEEEEEEEEEEE
T ss_pred -C--ceEEEEEEEEEE
Confidence 1 334444444433
No 4
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B
Probab=27.52 E-value=7.3 Score=31.87 Aligned_cols=27 Identities=22% Similarity=0.525 Sum_probs=15.4
Q ss_pred HHHHHHHHHheeeeE---EEEecCCCEEEE
Q 038323 25 AIILLLAGVTALTLW---LVYRPHKPRFSV 51 (205)
Q Consensus 25 ~~~~~~lg~~~~i~~---lvlrP~~P~~~V 51 (205)
++-++++|++++.+| ..+.|+.|++.-
T Consensus 46 iFY~~LaglFa~~m~v~l~Tld~~~Pkyqd 75 (290)
T 3ixz_B 46 AFYVVMSGIFALCIYVLMRTIDPYTPDYQD 75 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCccc
Confidence 333344455554444 357788998863
No 5
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=25.79 E-value=5.6 Score=32.51 Aligned_cols=48 Identities=17% Similarity=0.058 Sum_probs=27.1
Q ss_pred CCccceehhhHHHHHHHHHHheeeeEE---EEecCCCEEEEEeeEEeeecCC
Q 038323 14 SSLGPTVGKIIAIILLLAGVTALTLWL---VYRPHKPRFSVVAAAIYNINAS 62 (205)
Q Consensus 14 ~~~~~~~~~~l~~~~~~lg~~~~i~~l---vlrP~~P~~~V~~~~l~~~~~~ 62 (205)
++|.+++..-+++-++++|++++.+|. .+.|+.|++. +...-.++.+.
T Consensus 13 ~sW~~IllFYliFY~~La~lFa~~m~v~l~TLd~~~Pkyq-d~~~~PGL~~~ 63 (286)
T 3kdp_B 13 GSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQ-DRVAPPGLTQI 63 (286)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHGGGSCSCSSSCSCC-TTTCSCCCCBS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCccc-CCCCCCcceec
Confidence 355555544444444555555555444 4788999998 55544444443
No 6
>2kj1_A BM2 protein; cytoplasmic domain, coiled coil, transport protein; NMR {Influenza b virus}
Probab=22.16 E-value=19 Score=22.89 Aligned_cols=14 Identities=7% Similarity=0.344 Sum_probs=3.6
Q ss_pred EEEEEEEEeeCCCC
Q 038323 69 TSMQFTLVTRNSNR 82 (205)
Q Consensus 69 ~~~~~~l~~~NpN~ 82 (205)
-..++.++++|||+
T Consensus 8 rgv~lki~ir~pnk 21 (89)
T 2kj1_A 8 RGVNMKIRIKGPNK 21 (89)
T ss_dssp ----------CCCH
T ss_pred ccCceEEEecCCCH
Confidence 35677889999997
No 7
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=21.70 E-value=19 Score=23.33 Aligned_cols=17 Identities=35% Similarity=0.714 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHheeeeE
Q 038323 23 IIAIILLLAGVTALTLW 39 (205)
Q Consensus 23 ~l~~~~~~lg~~~~i~~ 39 (205)
.+++.++++|++++++|
T Consensus 16 gvi~gilliGllllliw 32 (79)
T 2knc_B 16 SVMGAILLIGLAALLIW 32 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555667777777766
No 8
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=19.52 E-value=20 Score=17.48 Aligned_cols=11 Identities=27% Similarity=0.582 Sum_probs=7.6
Q ss_pred EEeeCCCCeee
Q 038323 75 LVTRNSNRRVD 85 (205)
Q Consensus 75 l~~~NpN~~~~ 85 (205)
+..+|||.+..
T Consensus 6 fllrnpndkye 16 (26)
T 1nrp_R 6 FLLRNPNDKYE 16 (26)
T ss_pred hhhcCCCcccC
Confidence 34689998643
No 9
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=19.30 E-value=2.3e+02 Score=19.39 Aligned_cols=54 Identities=9% Similarity=0.074 Sum_probs=32.1
Q ss_pred CEEEEEeeEEeeecCCCCCeEeEEEEEEEEeeCCCCeeeEEEcceEEEEEECCEEeeCCCCCCC
Q 038323 47 PRFSVVAAAIYNINASSPPFISTSMQFTLVTRNSNRRVDIIYDKLSAYVSYRDQQITAPVYLPP 110 (205)
Q Consensus 47 P~~~V~~~~l~~~~~~~~~~l~~~~~~~l~~~NpN~~~~i~y~~~~~~v~Y~g~~lg~~~~lp~ 110 (205)
|...|.+++-+.. .-+-..+++++++|.-..- =..+.+.++.+|..++ ...+++
T Consensus 3 PDL~vt~itP~~~------~~~~~~ti~atVkN~G~~~---a~~~~V~ly~~g~~v~-t~~v~~ 56 (114)
T 2l0d_A 3 PDLVPVSLTPVTV------VPNTVNTMTATIENQGNKD---STSFNVSLLVDGIVVD-TQTVTS 56 (114)
T ss_dssp CCEEEEEEECSEE------CTTSEEEEEEEEEECSSSC---BCCEEEEEEETTEEEE-EEEESC
T ss_pred CCcEEEeccCCCc------CCCCeEEEEEEEEECCCCC---CCCEEEEEEECCEEEc-ceeccc
Confidence 6666666643222 1233557777888985422 2456777788888887 454443
No 10
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=19.00 E-value=29 Score=17.08 Aligned_cols=11 Identities=27% Similarity=0.582 Sum_probs=0.0
Q ss_pred EEeeCCCCeee
Q 038323 75 LVTRNSNRRVD 85 (205)
Q Consensus 75 l~~~NpN~~~~ 85 (205)
+..+|||.+..
T Consensus 6 fllrnpndkye 16 (27)
T 1nro_R 6 FLLRNPNDKYE 16 (27)
T ss_pred ccccCCCcccC
Done!