BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038324
         (84 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2W8S|B Chain B, Crystal Structure Of A Catalytically Promiscuous
           Phosphonate Monoester Hydrolase From Burkholderia
           Caryophylli
 pdb|2W8S|C Chain C, Crystal Structure Of A Catalytically Promiscuous
           Phosphonate Monoester Hydrolase From Burkholderia
           Caryophylli
 pdb|2W8S|D Chain D, Crystal Structure Of A Catalytically Promiscuous
           Phosphonate Monoester Hydrolase From Burkholderia
           Caryophylli
          Length = 514

 Score = 26.6 bits (57), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 22  NSVVFKYPAVFNFGDSNSDTGELAAGLGFTLDPVYGRTHF-KASSGRFCDGRLIVDFLSK 80
           N+  F+ P V      N   G++  G   ++D +     +    + R CDGR ++ FL++
Sbjct: 341 NAESFRIPLVIKDAGQNRHAGQIEEGFSESIDVMPTILEWLGGETPRACDGRSLLPFLAE 400


>pdb|2W8S|A Chain A, Crystal Structure Of A Catalytically Promiscuous
           Phosphonate Monoester Hydrolase From Burkholderia
           Caryophylli
          Length = 513

 Score = 26.6 bits (57), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 22  NSVVFKYPAVFNFGDSNSDTGELAAGLGFTLDPVYGRTHF-KASSGRFCDGRLIVDFLSK 80
           N+  F+ P V      N   G++  G   ++D +     +    + R CDGR ++ FL++
Sbjct: 340 NAESFRIPLVIKDAGQNRHAGQIEEGFSESIDVMPTILEWLGGETPRACDGRSLLPFLAE 399


>pdb|3AYX|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
           Hydrogenovibrio Marinus In An H2-Reduced Condition
 pdb|3AYX|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
           Hydrogenovibrio Marinus In An H2-Reduced Condition
 pdb|3AYY|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
           Hydrogenovibrio Marinus In A Ferricyanide-Oxidized
           Condition
 pdb|3AYY|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
           Hydrogenovibrio Marinus In A Ferricyanide-Oxidized
           Condition
 pdb|3AYZ|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
           Hydrogenovibrio Marinus In An Air-Oxidized Condition
 pdb|3AYZ|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
           Hydrogenovibrio Marinus In An Air-Oxidized Condition
          Length = 596

 Score = 25.8 bits (55), Expect = 7.4,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 27  KYPAVFNFGDSN-SDTGELAAGLGFTLDPVYGRTHFKASSGRFCDGRLIVDFLSKFNNI 84
           ++ AV    D N  D  +L A LG T+    GRT  +A    +C   ++ DF    +NI
Sbjct: 437 RFNAVCRLLDPNHKDITDLKAFLGSTI----GRTLARALESEYCGDMMLDDFNQLISNI 491


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.142    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,390,139
Number of Sequences: 62578
Number of extensions: 84720
Number of successful extensions: 122
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 122
Number of HSP's gapped (non-prelim): 3
length of query: 84
length of database: 14,973,337
effective HSP length: 52
effective length of query: 32
effective length of database: 11,719,281
effective search space: 375016992
effective search space used: 375016992
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)