BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038325
(231 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SFD8|NFYB9_ARATH Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana
GN=NFYB9 PE=1 SV=2
Length = 238
Score = 200 bits (508), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 107/193 (55%), Positives = 129/193 (66%), Gaps = 20/193 (10%)
Query: 51 PCVVREQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHRE 110
PCV REQDQYMPIANVIRIMR+ LP HAKISDDAKET+QECVSEYISF+TGEANERC RE
Sbjct: 54 PCVAREQDQYMPIANVIRIMRKTLPSHAKISDDAKETIQECVSEYISFVTGEANERCQRE 113
Query: 111 QRKTITAEDVVWAMGKLGFDNYVEPLSIFLNRFRDSEHERTAAQHKEPIPMPRRGPSVDY 170
QRKTITAED++WAM KLGFDNYV+PL++F+NR+R+ E +R +A EP + +
Sbjct: 114 QRKTITAEDILWAMSKLGFDNYVDPLTVFINRYREIETDRGSALRGEPPSLRQTYGGNGI 173
Query: 171 GLFG-----LPPGPFGPVFNMGPQQGVFDPSI---GGFLREGSGSGSGSSSQATGH---- 218
G G PPGP+G G+ D S+ GG + SG SS G
Sbjct: 174 GFHGPSHGLPPPGPYG--------YGMLDQSMVMGGGRYYQNGSSGQDESSVGGGSSSSI 225
Query: 219 NHLPGFDPFAQFK 231
N +P FD + Q+K
Sbjct: 226 NGMPAFDHYGQYK 238
>sp|Q84W66|NFYB6_ARATH Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana
GN=NFYB6 PE=1 SV=2
Length = 234
Score = 185 bits (470), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/134 (64%), Positives = 104/134 (77%), Gaps = 7/134 (5%)
Query: 52 CVVREQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQ 111
C VREQD++MPIANVIRIMRRILP HAKISDD+KET+QECVSEYISFITGEANERC REQ
Sbjct: 54 CTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEANERCQREQ 113
Query: 112 RKTITAEDVVWAMGKLGFDNYVEPLSIFLNRFRDSEHERTAAQHKEPIPMPR-------R 164
RKTITAEDV+WAM KLGFD+Y+EPL+++L+R+R+ E ER + + M
Sbjct: 114 RKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGERGVSCSAGSVSMTNGLVVKRPN 173
Query: 165 GPSVDYGLFGLPPG 178
G +YG +G PG
Sbjct: 174 GTMTEYGAYGPVPG 187
>sp|O23310|NFYB3_ARATH Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana
GN=NFYB3 PE=2 SV=1
Length = 161
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 85/105 (80%)
Query: 49 GAPCVVREQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCH 108
G REQD+++PIANV RIM++ LP +AKIS DAKETVQECVSE+ISFITGEA+++C
Sbjct: 14 GGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQ 73
Query: 109 REQRKTITAEDVVWAMGKLGFDNYVEPLSIFLNRFRDSEHERTAA 153
RE+RKTI +D++WAM LGF++YVEPL ++L ++R+ E E+T
Sbjct: 74 REKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTT 118
>sp|Q9FGJ3|NFYB2_ARATH Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana
GN=NFYB2 PE=2 SV=1
Length = 190
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 62/97 (63%), Positives = 84/97 (86%)
Query: 55 REQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKT 114
REQD+++PIANV RIM++ LP +AKIS DAKET+QECVSE+ISF+TGEA+++C +E+RKT
Sbjct: 26 REQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKT 85
Query: 115 ITAEDVVWAMGKLGFDNYVEPLSIFLNRFRDSEHERT 151
I +D++WAM LGF++YVEPL ++L RFR+ E ERT
Sbjct: 86 INGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERT 122
>sp|Q9SLG0|NFYB1_ARATH Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana
GN=NFYB1 PE=1 SV=2
Length = 141
Score = 142 bits (357), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 82/100 (82%)
Query: 54 VREQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRK 113
VREQD+Y+PIAN+ RIM++ LPP+ KI DAK+TVQECVSE+ISFIT EA+++C +E+RK
Sbjct: 19 VREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRK 78
Query: 114 TITAEDVVWAMGKLGFDNYVEPLSIFLNRFRDSEHERTAA 153
T+ +D++WAM LGF++Y+EPL I+L R+R+ E + +
Sbjct: 79 TVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGS 118
>sp|P25209|NFYB_MAIZE Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2
SV=1
Length = 179
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 80/94 (85%)
Query: 54 VREQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRK 113
VREQD+++PIAN+ RIM++ +P + KI+ DAKETVQECVSE+ISFIT EA+++C RE+RK
Sbjct: 29 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 88
Query: 114 TITAEDVVWAMGKLGFDNYVEPLSIFLNRFRDSE 147
TI +D++WAM LGF++Y+EPL ++L ++R+ E
Sbjct: 89 TINGDDLLWAMATLGFEDYIEPLKVYLQKYREME 122
>sp|Q9SIT9|NFYB7_ARATH Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana
GN=NFYB7 PE=2 SV=1
Length = 215
Score = 139 bits (351), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 84/99 (84%)
Query: 55 REQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKT 114
+EQD+++PIANV RIM+++LP + KIS DAKETVQECVSE+ISF+TGEA+++C RE+RKT
Sbjct: 35 KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 94
Query: 115 ITAEDVVWAMGKLGFDNYVEPLSIFLNRFRDSEHERTAA 153
I +D++WA+ LGF++YV PL ++L ++RD+E E+ +
Sbjct: 95 INGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNS 133
>sp|Q60EQ4|NFYB3_ORYSJ Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp.
japonica GN=NFYB3 PE=1 SV=2
Length = 185
Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 80/94 (85%)
Query: 54 VREQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRK 113
VREQD+++PIAN+ RIM++ +P + KI+ DAKETVQECVSE+ISFIT EA+++C RE+RK
Sbjct: 36 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 95
Query: 114 TITAEDVVWAMGKLGFDNYVEPLSIFLNRFRDSE 147
TI +D++WAM LGF++Y+EPL ++L ++R+ E
Sbjct: 96 TINGDDLLWAMATLGFEDYIEPLKVYLQKYREME 129
>sp|P63140|NFYB_RAT Nuclear transcription factor Y subunit beta OS=Rattus norvegicus
GN=Nfyb PE=1 SV=1
Length = 207
Score = 138 bits (348), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 78/98 (79%)
Query: 49 GAPCVVREQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCH 108
G+ REQD Y+PIANV RIM+ +P KI+ DAKE VQECVSE+ISFIT EA+ERCH
Sbjct: 47 GSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCH 106
Query: 109 REQRKTITAEDVVWAMGKLGFDNYVEPLSIFLNRFRDS 146
+E+RKTI ED+++AM LGFD+YVEPL ++L +FR++
Sbjct: 107 QEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREA 144
>sp|P63139|NFYB_MOUSE Nuclear transcription factor Y subunit beta OS=Mus musculus GN=Nfyb
PE=1 SV=1
Length = 207
Score = 138 bits (348), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 78/98 (79%)
Query: 49 GAPCVVREQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCH 108
G+ REQD Y+PIANV RIM+ +P KI+ DAKE VQECVSE+ISFIT EA+ERCH
Sbjct: 47 GSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCH 106
Query: 109 REQRKTITAEDVVWAMGKLGFDNYVEPLSIFLNRFRDS 146
+E+RKTI ED+++AM LGFD+YVEPL ++L +FR++
Sbjct: 107 QEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREA 144
>sp|P25208|NFYB_HUMAN Nuclear transcription factor Y subunit beta OS=Homo sapiens GN=NFYB
PE=1 SV=2
Length = 207
Score = 138 bits (348), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 78/98 (79%)
Query: 49 GAPCVVREQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCH 108
G+ REQD Y+PIANV RIM+ +P KI+ DAKE VQECVSE+ISFIT EA+ERCH
Sbjct: 47 GSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCH 106
Query: 109 REQRKTITAEDVVWAMGKLGFDNYVEPLSIFLNRFRDS 146
+E+RKTI ED+++AM LGFD+YVEPL ++L +FR++
Sbjct: 107 QEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREA 144
>sp|Q32KW0|NFYB_BOVIN Nuclear transcription factor Y subunit beta OS=Bos taurus GN=NFYB
PE=2 SV=1
Length = 207
Score = 138 bits (348), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 78/98 (79%)
Query: 49 GAPCVVREQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCH 108
G+ REQD Y+PIANV RIM+ +P KI+ DAKE VQECVSE+ISFIT EA+ERCH
Sbjct: 47 GSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCH 106
Query: 109 REQRKTITAEDVVWAMGKLGFDNYVEPLSIFLNRFRDS 146
+E+RKTI ED+++AM LGFD+YVEPL ++L +FR++
Sbjct: 107 QEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREA 144
>sp|Q6RG77|NFYB_HORSE Nuclear transcription factor Y subunit beta OS=Equus caballus
GN=NFYB PE=2 SV=1
Length = 207
Score = 138 bits (348), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 78/98 (79%)
Query: 49 GAPCVVREQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCH 108
G+ REQD Y+PIANV RIM+ +P KI+ DAKE VQECVSE+ISFIT EA+ERCH
Sbjct: 47 GSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCH 106
Query: 109 REQRKTITAEDVVWAMGKLGFDNYVEPLSIFLNRFRDS 146
+E+RKTI ED+++AM LGFD+YVEPL ++L +FR++
Sbjct: 107 QEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREA 144
>sp|P25207|NFYB_CHICK Nuclear transcription factor Y subunit beta OS=Gallus gallus
GN=NFYB PE=2 SV=2
Length = 205
Score = 138 bits (347), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 78/98 (79%)
Query: 49 GAPCVVREQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCH 108
G+ REQD Y+PIANV RIM+ +P KI+ DAKE VQECVSE+ISFIT EA+ERCH
Sbjct: 45 GSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCH 104
Query: 109 REQRKTITAEDVVWAMGKLGFDNYVEPLSIFLNRFRDS 146
+E+RKTI ED+++AM LGFD+YVEPL ++L +FR++
Sbjct: 105 QEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREA 142
>sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana
GN=NFYB8 PE=2 SV=1
Length = 173
Score = 138 bits (347), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 90/130 (69%), Gaps = 2/130 (1%)
Query: 54 VREQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRK 113
VREQD+++PIAN+ RIM+R LP + KI+ DAKE VQECVSE+ISF+T EA+++C RE+RK
Sbjct: 28 VREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSEASDKCQREKRK 87
Query: 114 TITAEDVVWAMGKLGFDNYVEPLSIFLNRFRDSEHERTAAQHKEPIPMPRRGPSVDYGLF 173
TI +D++WAM LGF++Y+EPL ++L R+R+ E + + + G S G F
Sbjct: 88 TINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGDTKGSAKGGDPNAKKDGQSSQNGQF 147
Query: 174 G--LPPGPFG 181
GP+G
Sbjct: 148 SQLAHQGPYG 157
>sp|Q67XJ2|NFYBA_ARATH Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana
GN=NFYB10 PE=2 SV=1
Length = 176
Score = 137 bits (346), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 80/94 (85%)
Query: 54 VREQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRK 113
VREQD+++PIAN+ RIM+R LP + KI+ DAKET+QECVSE+ISF+T EA+++C RE+RK
Sbjct: 27 VREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRK 86
Query: 114 TITAEDVVWAMGKLGFDNYVEPLSIFLNRFRDSE 147
TI +D++WAM LGF++Y++PL ++L R+R+ E
Sbjct: 87 TINGDDLLWAMATLGFEDYIDPLKVYLMRYREME 120
>sp|Q54WV0|NFYB_DICDI Nuclear transcription factor Y subunit beta OS=Dictyostelium
discoideum GN=nfyB PE=3 SV=1
Length = 490
Score = 137 bits (345), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 57/93 (61%), Positives = 81/93 (87%)
Query: 55 REQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKT 114
REQD+Y+PIAN+IRIM++ LP +AK++ DAKETVQ+CVSE+ISFIT EA+++C +E+RKT
Sbjct: 47 REQDRYLPIANIIRIMKKALPNNAKVAKDAKETVQDCVSEFISFITSEASDKCQQEKRKT 106
Query: 115 ITAEDVVWAMGKLGFDNYVEPLSIFLNRFRDSE 147
I ED++ AM LGF+NYVEPL ++L ++R++E
Sbjct: 107 INGEDIIAAMVSLGFENYVEPLKVYLLKYRETE 139
>sp|P25210|NFYB_PETMA Nuclear transcription factor Y subunit beta OS=Petromyzon marinus
GN=NFYB PE=2 SV=1
Length = 209
Score = 135 bits (341), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/92 (64%), Positives = 75/92 (81%)
Query: 55 REQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKT 114
REQD Y+PIANV RIM+ +P KI+ DAKE VQECVSE+ISFIT EA+ERCH+E+RKT
Sbjct: 54 REQDIYLPIANVARIMKTSIPSSGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKT 113
Query: 115 ITAEDVVWAMGKLGFDNYVEPLSIFLNRFRDS 146
I ED+++AM LGFD+YVEPL +L ++R+S
Sbjct: 114 INGEDILFAMSTLGFDSYVEPLKQYLQKYRES 145
>sp|Q65XK1|NFYB4_ORYSJ Nuclear transcription factor Y subunit B-4 OS=Oryza sativa subsp.
japonica GN=NFYB4 PE=2 SV=2
Length = 143
Score = 134 bits (336), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 88/109 (80%), Gaps = 1/109 (0%)
Query: 55 REQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKT 114
+EQD+++PIAN+ RIMRR +P + KI+ D+KE+VQECVSE+ISFIT EA+++C +E+RKT
Sbjct: 21 KEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKT 80
Query: 115 ITAEDVVWAMGKLGFDNYVEPLSIFLNRFRDSEHERTAAQHKEPIPMPR 163
I +D++W+MG LGF++YVEPL ++L +R++E + ++ E +P+ +
Sbjct: 81 INGDDLIWSMGTLGFEDYVEPLKLYLRLYRETEGDTKGSRASE-LPVKK 128
>sp|O82248|NFYB5_ARATH Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana
GN=NFYB5 PE=2 SV=1
Length = 160
Score = 134 bits (336), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 56/98 (57%), Positives = 80/98 (81%)
Query: 53 VVREQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQR 112
+V+EQD+ +PIANV RIM+ ILP +AK+S +AKET+QECVSE+ISF+TGEA+++CH+E+R
Sbjct: 48 MVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKR 107
Query: 113 KTITAEDVVWAMGKLGFDNYVEPLSIFLNRFRDSEHER 150
KT+ +D+ WAM LGFD+Y L +L+R+R E E+
Sbjct: 108 KTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEK 145
>sp|Q5QMG3|NFYB2_ORYSJ Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp.
japonica GN=NFYB2 PE=2 SV=1
Length = 178
Score = 133 bits (335), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 80/92 (86%)
Query: 54 VREQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRK 113
VREQD+++PIAN+ RIM++ +P + KI+ DAKET+QECVSE+ISF+T EA+++C +E+RK
Sbjct: 32 VREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRK 91
Query: 114 TITAEDVVWAMGKLGFDNYVEPLSIFLNRFRD 145
TI ED+++AMG LGF+ YV+PL I+L+++R+
Sbjct: 92 TINGEDLLFAMGTLGFEEYVDPLKIYLHKYRE 123
>sp|O04027|NFYB4_ARATH Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana
GN=NFYB4 PE=1 SV=1
Length = 139
Score = 125 bits (315), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 77/96 (80%)
Query: 56 EQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTI 115
++D+ +PIANV R+M++ILP +AKIS +AK+TVQEC +E+ISF+T EA+E+CHRE RKT+
Sbjct: 3 DEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTV 62
Query: 116 TAEDVVWAMGKLGFDNYVEPLSIFLNRFRDSEHERT 151
+D+ WA+ LG DNY + + L+++R++E ERT
Sbjct: 63 NGDDIWWALSTLGLDNYADAVGRHLHKYREAERERT 98
>sp|P13434|HAP3_YEAST Transcriptional activator HAP3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HAP3 PE=1 SV=1
Length = 144
Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 71/92 (77%)
Query: 53 VVREQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQR 112
+REQD+++PI NV R+M+ LPP AK+S DAKE +QECVSE ISF+T EA++RC ++R
Sbjct: 34 TLREQDRWLPINNVARLMKNTLPPSAKVSKDAKECMQECVSELISFVTSEASDRCAADKR 93
Query: 113 KTITAEDVVWAMGKLGFDNYVEPLSIFLNRFR 144
KTI ED++ ++ LGF+NY E L I+L ++R
Sbjct: 94 KTINGEDILISLHALGFENYAEVLKIYLAKYR 125
>sp|P36611|HAP3_SCHPO Transcriptional activator hap3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hap3 PE=3 SV=1
Length = 116
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 74/97 (76%), Gaps = 2/97 (2%)
Query: 61 MPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDV 120
+PIANV RIM+ LP +AKIS +AK+ VQ+CVSE+ISF+TGEA+E+C +E+RKTIT EDV
Sbjct: 12 LPIANVARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGEDV 71
Query: 121 VWAMGKLGFDNYVEPLSIFLNRFRDSEHERTAAQHKE 157
+ A+ LGF+NY E L I L ++R E + +A KE
Sbjct: 72 LLALNTLGFENYAEVLKISLTKYR--EQQARSASMKE 106
>sp|P40914|HAP3_KLULA Transcriptional activator HAP3 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=HAP3 PE=3 SV=1
Length = 205
Score = 110 bits (275), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 66/89 (74%)
Query: 56 EQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTI 115
EQD+++PI NV R+M+ LP K+S DAKE +QECVSE+ISF+T EA +RC +RKTI
Sbjct: 22 EQDRWLPINNVARLMKNTLPATTKVSKDAKECMQECVSEFISFVTSEACDRCTSGKRKTI 81
Query: 116 TAEDVVWAMGKLGFDNYVEPLSIFLNRFR 144
ED++ ++ LGF+NY E L I+L ++R
Sbjct: 82 NGEDILLSLHALGFENYAEVLKIYLAKYR 110
>sp|P25211|NFYB_XENLA Nuclear transcription factor Y subunit beta (Fragment) OS=Xenopus
laevis GN=nfyb PE=2 SV=1
Length = 122
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 52/59 (88%)
Query: 88 VQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKLGFDNYVEPLSIFLNRFRDS 146
VQECVSE+ISFIT EA+ERCH+E+RKTI ED+++AM LGFD+YVEPL ++L +FR++
Sbjct: 1 VQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREA 59
>sp|Q6Z348|NFYB1_ORYSJ Nuclear transcription factor Y subunit B-1 OS=Oryza sativa subsp.
japonica GN=NFYB1 PE=1 SV=2
Length = 186
Score = 84.7 bits (208), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 60/96 (62%), Gaps = 2/96 (2%)
Query: 61 MPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDV 120
+P+AN++R+++++LP AKI AK +C E++ F+ EA+E+ E R+T+ ED
Sbjct: 34 LPMANLVRLIKKVLPGKAKIGGAAKGLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDY 93
Query: 121 VWAMGKLGFDNYVEPLSIFLNRFRDSEHERTAAQHK 156
+ + G LGFD YV+P+ +++ +R E ER +
Sbjct: 94 LGSFGDLGFDRYVDPMDAYIHGYR--EFERAGGNRR 127
>sp|Q55DJ5|NC2B_DICDI Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1
Length = 178
Score = 74.3 bits (181), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 55/83 (66%)
Query: 55 REQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKT 114
+E + +P A V ++++ +LP K S++ ++ + EC E+I I+ EAN+ C REQ++T
Sbjct: 7 KEDNLSLPKATVSKLIKEMLPQDVKCSNETRDLILECCVEFIHLISSEANDICGREQKRT 66
Query: 115 ITAEDVVWAMGKLGFDNYVEPLS 137
I AE V+ A+ +LGF +Y + +S
Sbjct: 67 IAAEHVIKALTELGFSDYTQKVS 89
>sp|P49592|NC2B_ARATH Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1
Length = 159
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 55/81 (67%)
Query: 56 EQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTI 115
++D +P A + +I++ +LPP +++ DA++ + EC E+I+ ++ E+N+ C++E ++TI
Sbjct: 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTI 70
Query: 116 TAEDVVWAMGKLGFDNYVEPL 136
E V+ A+ LGF Y+E +
Sbjct: 71 APEHVLKALQVLGFGEYIEEV 91
>sp|Q9VJQ5|NC2B_DROME Protein Dr1 OS=Drosophila melanogaster GN=NC2beta PE=1 SV=1
Length = 183
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 60/94 (63%), Gaps = 8/94 (8%)
Query: 40 PLQSLLPPAGAPCVVREQDQY-MPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISF 98
P + LLPP+ E D+ +P A++ +I++ ++P +++++++E + C SE+I
Sbjct: 4 PQEELLPPSA------EDDELTLPRASINKIIKELVPT-VRVANESRELILNCCSEFIHL 56
Query: 99 ITGEANERCHREQRKTITAEDVVWAMGKLGFDNY 132
I+ EANE C+ +KTI AE V+ A+ +LGF +Y
Sbjct: 57 ISSEANEVCNMRNKKTINAEHVLEALERLGFHDY 90
>sp|Q5XI68|NC2B_RAT Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1
Length = 176
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 19/136 (13%)
Query: 58 DQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITA 117
D +P A + ++++ LP + ++++DA+E V C +E+I I+ EANE C++ ++KTI+
Sbjct: 10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 68
Query: 118 EDVVWAMGKLGFDNYVEPLSIFLNRFRDSEHERTAAQHKEPIPMPRRGPSVDYGLFGLPP 177
E V+ A+ LGF +Y+ + L Q + + + RR S G+P
Sbjct: 69 EHVIQALESLGFGSYISEVKEVL-------------QECKTVALKRRKASSRLENLGIPE 115
Query: 178 GPFGPVFNMGPQQGVF 193
+ QQ +F
Sbjct: 116 EEL-----LRQQQELF 126
>sp|Q91WV0|NC2B_MOUSE Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1
Length = 176
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 19/136 (13%)
Query: 58 DQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITA 117
D +P A + ++++ LP + ++++DA+E V C +E+I I+ EANE C++ ++KTI+
Sbjct: 10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 68
Query: 118 EDVVWAMGKLGFDNYVEPLSIFLNRFRDSEHERTAAQHKEPIPMPRRGPSVDYGLFGLPP 177
E V+ A+ LGF +Y+ + L Q + + + RR S G+P
Sbjct: 69 EHVIQALESLGFGSYISEVKEVL-------------QECKTVALKRRKASSRLENLGIPE 115
Query: 178 GPFGPVFNMGPQQGVF 193
+ QQ +F
Sbjct: 116 EEL-----LRQQQELF 126
>sp|Q01658|NC2B_HUMAN Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1
Length = 176
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 19/136 (13%)
Query: 58 DQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITA 117
D +P A + ++++ LP + ++++DA+E V C +E+I I+ EANE C++ ++KTI+
Sbjct: 10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 68
Query: 118 EDVVWAMGKLGFDNYVEPLSIFLNRFRDSEHERTAAQHKEPIPMPRRGPSVDYGLFGLPP 177
E V+ A+ LGF +Y+ + L Q + + + RR S G+P
Sbjct: 69 EHVIQALESLGFGSYISEVKEVL-------------QECKTVALKRRKASSRLENLGIPE 115
Query: 178 GPFGPVFNMGPQQGVF 193
+ QQ +F
Sbjct: 116 EEL-----LRQQQELF 126
>sp|Q5ZMV3|NC2B_CHICK Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1
Length = 176
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 19/136 (13%)
Query: 58 DQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITA 117
D +P A + ++++ LP + ++++DA+E V C +E+I I+ EANE C++ ++KTI+
Sbjct: 10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 68
Query: 118 EDVVWAMGKLGFDNYVEPLSIFLNRFRDSEHERTAAQHKEPIPMPRRGPSVDYGLFGLPP 177
E V+ A+ LGF +Y+ + L Q + + + RR S G+P
Sbjct: 69 EHVIQALESLGFGSYISEVKEVL-------------QECKTVALKRRKASSRLENLGIPE 115
Query: 178 GPFGPVFNMGPQQGVF 193
+ QQ +F
Sbjct: 116 EEL-----LRQQQELF 126
>sp|O14348|NC2B_SCHPO Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ncb2 PE=3 SV=1
Length = 161
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 14/98 (14%)
Query: 61 MPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDV 120
+P A V +++ ILP + +A++ + EC E+I ++ EANE C +E +KTI AE +
Sbjct: 12 LPKATVQKMVSDILPVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAKKTIAAEHI 71
Query: 121 VWAMGKLGFDNYV-EPLSIFLNRFRDSEHERTAAQHKE 157
+ A+ L F Y+ E L + AA+HKE
Sbjct: 72 IKALENLEFKEYIAEALEV-------------AAEHKE 96
>sp|Q9JKP7|DPOE3_MOUSE DNA polymerase epsilon subunit 3 OS=Mus musculus GN=Pole3 PE=2 SV=1
Length = 145
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%)
Query: 55 REQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKT 114
R +D +P A + RI++ LP IS +A+ + S ++ + T AN + +RKT
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 63
Query: 115 ITAEDVVWAMGKLGFDNYVEPLSIFLNRFRDSEHERTAAQHK 156
+ A DV+ AM ++ F ++ PL L +R E + A +
Sbjct: 64 LNASDVLSAMEEMEFQRFITPLKEALEAYRRDEKGKKEASEQ 105
>sp|Q5R4W3|DPOE3_PONAB DNA polymerase epsilon subunit 3 OS=Pongo abelii GN=POLE3 PE=2 SV=1
Length = 147
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 55 REQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKT 114
R +D +P A + RI++ LP IS +A+ + S ++ + T AN + +RKT
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 63
Query: 115 ITAEDVVWAMGKLGFDNYVEPLSIFLNRFR 144
+ A DV+ AM ++ F +V PL L +R
Sbjct: 64 LNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>sp|Q9NRF9|DPOE3_HUMAN DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1 SV=1
Length = 147
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 55 REQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKT 114
R +D +P A + RI++ LP IS +A+ + S ++ + T AN + +RKT
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 63
Query: 115 ITAEDVVWAMGKLGFDNYVEPLSIFLNRFR 144
+ A DV+ AM ++ F +V PL L +R
Sbjct: 64 LNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>sp|Q3SZN5|DPOE3_BOVIN DNA polymerase epsilon subunit 3 OS=Bos taurus GN=POLE3 PE=2 SV=1
Length = 147
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 55 REQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKT 114
R +D +P A + RI++ LP IS +A+ + S ++ + T AN + +RKT
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 63
Query: 115 ITAEDVVWAMGKLGFDNYVEPLSIFLNRFR 144
+ A DV+ AM ++ F +V PL L +R
Sbjct: 64 LNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>sp|Q642A5|DPOE3_RAT DNA polymerase epsilon subunit 3 OS=Rattus norvegicus GN=Pole3 PE=2
SV=1
Length = 145
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 55 REQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKT 114
R +D +P A + RI++ LP IS +A+ + S ++ + T AN + +RKT
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 63
Query: 115 ITAEDVVWAMGKLGFDNYVEPLSIFLNRFR 144
+ A DV+ AM ++ F +V PL L +R
Sbjct: 64 LNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>sp|Q6CHS6|DPB4_YARLI DNA polymerase epsilon subunit D OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=DPB4 PE=3 SV=1
Length = 163
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 58 DQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITA 117
D P + + + + LP A IS DA +Q + ++S++ N RK IT
Sbjct: 34 DLLYPKSTIKNLAKETLPDDAIISKDALTAIQRAATLFVSYMASHGNASAEAGGRKKITP 93
Query: 118 EDVVWAMGKLGFDNYVEPLSIFLNRFRDSEHERTAAQHKE 157
+DV A+ + +V ++ +N F E+ AQ K+
Sbjct: 94 QDVFVALKDVDLAQFVPSVTQSVNEF-----EQEVAQRKK 128
>sp|Q92317|NCB2_YEAST Negative cofactor 2 complex subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NCB2 PE=1
SV=1
Length = 146
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 61 MPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDV 120
+P A V +++ IL + DA+E + E+I ++ A+E E +KTI E V
Sbjct: 10 LPKATVQKMISEILDQDLMFTKDAREIIINSGIEFIMILSSMASEMADNEAKKTIAPEHV 69
Query: 121 VWAMGKLGFDNYVEPLSIFLNRFRDSE 147
+ A+ +L ++ ++ L L F+ S+
Sbjct: 70 IKALEELEYNEFIPFLEEILLNFKGSQ 96
>sp|O29910|HAF1_ARCFU Probable archaeal histone A1-1 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=hpyA1-1 PE=3 SV=1
Length = 72
Score = 37.0 bits (84), Expect = 0.11, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 61 MPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDV 120
+P+A V R++R+ +++S+DAK + + + EY I +A E RKT+ +D+
Sbjct: 8 LPLAPVERLLRK--AGASRVSEDAKVELAKAIEEYAMQIGKKAAELAKHAGRKTVKVDDI 65
Query: 121 VWAMGKL 127
A+ +L
Sbjct: 66 KLALREL 72
>sp|P95669|HANA_THEZI Archaeal histone HAN1 subunit A OS=Thermococcus zilligii GN=han1A
PE=1 SV=3
Length = 67
Score = 37.0 bits (84), Expect = 0.12, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 61 MPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDV 120
+PIA + R++R+ ++S+DA + + E + EY + +A E RKT+ AEDV
Sbjct: 4 LPIAPIDRLIRK--AGAERVSEDAAKALAEYLEEYAIEVGKKATEFARHAGRKTVKAEDV 61
Query: 121 VWAM 124
A+
Sbjct: 62 RLAV 65
>sp|Q9Y8I1|HARA_PYRKO Archaeal histone A OS=Pyrococcus kodakaraensis (strain ATCC BAA-918
/ JCM 12380 / KOD1) GN=hpkA PE=3 SV=1
Length = 67
Score = 35.8 bits (81), Expect = 0.22, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 61 MPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDV 120
+PIA V R++R+ ++S+DA + + E + EY ++ +A + RKT+ AED+
Sbjct: 4 LPIAPVDRLIRK--AGAERVSEDAAKVLAEYLEEYAIELSKKAVDFARHAGRKTVKAEDI 61
Query: 121 VWAM 124
A+
Sbjct: 62 KLAI 65
>sp|O27731|HMT2_METTH DNA-binding protein HMt-1.2 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=hmtA2 PE=3 SV=3
Length = 68
Score = 35.8 bits (81), Expect = 0.23, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 61 MPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDV 120
+PIA V RI++ +ISDDA+E + + + E I EA + RKT+ A D+
Sbjct: 4 LPIAPVGRIIKN--AGAQRISDDAREALAKILEEKGEEIAKEAVKLAKHAGRKTVKASDI 61
Query: 121 VWAMGKL 127
A KL
Sbjct: 62 ELAAKKL 68
>sp|P50483|HMT1_METTH DNA-binding protein HMt-1.1 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=hmtA1 PE=3 SV=2
Length = 68
Score = 35.8 bits (81), Expect = 0.24, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 61 MPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDV 120
+PIA V RI++ +ISDDAKE + + + E I+ +A E RKT+ A D+
Sbjct: 4 LPIAPVGRIIKN--AGAQRISDDAKEALAKALEEMGEEISRKAVELAKHAGRKTVKATDI 61
Query: 121 VWAMGKL 127
A +L
Sbjct: 62 EMAAKQL 68
>sp|O28779|HAF2_ARCFU Probable archaeal histone A1-2 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=hpyA1-2 PE=3 SV=1
Length = 67
Score = 35.8 bits (81), Expect = 0.25, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 61 MPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDV 120
+P+A V R++R+ ++S DA E + E + +Y + +A E RKT+TA+D+
Sbjct: 4 LPMAPVDRLIRK--AGAERVSADAVEKMVEVLEDYAITVAKKAVEIAKHSGRKTVTADDI 61
Query: 121 VWAM 124
A+
Sbjct: 62 KLAL 65
>sp|P48784|HFOB_METFO Archaeal histone B OS=Methanobacterium formicicum GN=hfoB PE=3 SV=1
Length = 67
Score = 35.8 bits (81), Expect = 0.25, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 61 MPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDV 120
+PIA + RI++ ++SDDA+E + + + E I EA + RKT+ A DV
Sbjct: 3 LPIAPIGRIIKN--AGAERVSDDAREALAKALEEKGETIATEAVKLAKHAGRKTVKASDV 60
Query: 121 VWAMGKL 127
A+ +L
Sbjct: 61 ELAVKRL 67
>sp|P48783|HFO2_METFO Archaeal histone A2 OS=Methanobacterium formicicum GN=hfoA2 PE=1
SV=3
Length = 68
Score = 35.4 bits (80), Expect = 0.30, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 61 MPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDV 120
+PIA V RI++ +ISDDAKE + + + E + +A E RKT+ AED+
Sbjct: 4 LPIAPVGRIIKN--AGAQRISDDAKEALAKALEENGEELAKKAVELAKHAGRKTVKAEDI 61
Query: 121 VWAM 124
A+
Sbjct: 62 EMAV 65
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,759,720
Number of Sequences: 539616
Number of extensions: 4280294
Number of successful extensions: 13624
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 13530
Number of HSP's gapped (non-prelim): 155
length of query: 231
length of database: 191,569,459
effective HSP length: 114
effective length of query: 117
effective length of database: 130,053,235
effective search space: 15216228495
effective search space used: 15216228495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)